BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011708
(479 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225463572|ref|XP_002270172.1| PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera]
gi|297743556|emb|CBI36423.3| unnamed protein product [Vitis vinifera]
Length = 578
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/503 (76%), Positives = 436/503 (86%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIFNELV+S+CLT+VSL+AF+DCALQD+ LG+YPGV+D WMDVI+SQG SLL
Sbjct: 76 MLPRDISQQIFNELVFSQCLTDVSLKAFQDCALQDIYLGEYPGVSDSWMDVISSQGVSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS++T+SGLIHLKDC+NLQ+L+ N+C QISD GL+H+ GLSNLT+LSFRRNNAIT
Sbjct: 136 SVDLSGSEITNSGLIHLKDCTNLQALNLNYCDQISDHGLKHISGLSNLTTLSFRRNNAIT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGGL++LKGL KLESLNI C+CITD+D+KPLSGLT
Sbjct: 196 AQGMSAFSSLVNLVKLDLERCPGIHGGLIHLKGLTKLESLNINMCHCITDADLKPLSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK L+IS SKVTD G+AYLKGL KL LLN+EGCPVTAACL+SLS L SL LNLNR L
Sbjct: 256 NLKGLEISRSKVTDDGVAYLKGLHKLALLNMEGCPVTAACLESLSDLPSLLSLNLNRSML 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT--- 297
SDDGCE F++ +L+VLNLGFN++TD CLVHLKGLTNLESLNLDSC I DEGL NLT
Sbjct: 316 SDDGCENFARQENLRVLNLGFNDLTDACLVHLKGLTNLESLNLDSCRICDEGLANLTGLR 375
Query: 298 ---------------------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
GL NLESINLSFT ++D LRKL+ LSSLKSLNLDARQI
Sbjct: 376 HLKCLELSDTEVGSNGLRHLSGLANLESINLSFTAVTDSGLRKLSALSSLKSLNLDARQI 435
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAALTSLTGLTHLDLFGARITDSG +YLRNFKNL+SLEICGGGLTDAGVK+IKDL+
Sbjct: 436 TDAGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLT 495
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
LT+LNLSQNCNLTDK+LELISGLT LVSL+VSNSRIT+AGL+HLK LKNL+SLTL+SCK
Sbjct: 496 CLTVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCK 555
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VT NDIK+LQS+DLPNLVSFRPE
Sbjct: 556 VTVNDIKKLQSKDLPNLVSFRPE 578
>gi|449436168|ref|XP_004135866.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]
gi|449509305|ref|XP_004163550.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]
Length = 578
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/503 (72%), Positives = 422/503 (83%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQ I NELVYS+ LT++S++AFRDCALQDL G+ PGVND W+DVI+SQGSS+L
Sbjct: 76 MLPRDLSQLILNELVYSQLLTDISIQAFRDCALQDLHFGECPGVNDAWIDVISSQGSSVL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS+VTDSGL++L++CSNLQSL+ NFC ISD GL H+ G S LTSLSFR+N+ IT
Sbjct: 136 SVDLSGSEVTDSGLMNLRNCSNLQSLNLNFCEHISDRGLAHIGGFSRLTSLSFRKNSEIT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM FA L+NL++LDLE+C IHGGLV+L+GL KLESLNIKWCNCITDSD+KPLSGLT
Sbjct: 196 AQGMSVFAHLVNLIRLDLEKCPGIHGGLVHLQGLRKLESLNIKWCNCITDSDIKPLSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQISCSKVTD+GIAYLKGL KL+LLNLEGCPVTAACL +LSALG+L YLNL+RC +
Sbjct: 256 NLKGLQISCSKVTDAGIAYLKGLHKLSLLNLEGCPVTAACLYTLSALGALQYLNLSRCHI 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
+DDG E+FS +G+LK+LNLGFN+ITDECLVHLKGLTNLESLNLDSC I D+GLVNL L
Sbjct: 316 TDDGSEQFSGLGALKILNLGFNDITDECLVHLKGLTNLESLNLDSCRIEDDGLVNLKALH 375
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSL------------------------NLDARQI 336
L+ + LS T + LR L+GL +L+ L NLD RQI
Sbjct: 376 RLKCLELSDTDVGSNGLRHLSGLFNLEKLNLSFTVVTDIGLKKLSGLSSLKSLNLDTRQI 435
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLA+LT L GLTHLDLFGARITDSG YLRNFKNL+SLEICGGGLTDAGVK+IKDLS
Sbjct: 436 TDIGLASLTGLVGLTHLDLFGARITDSGTNYLRNFKNLQSLEICGGGLTDAGVKNIKDLS 495
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SL +LNLSQN NLTDK+LELISGLTGLVSLN+SNSRITSAGLRHLK LKNL+ LTLE+C+
Sbjct: 496 SLMVLNLSQNGNLTDKSLELISGLTGLVSLNISNSRITSAGLRHLKTLKNLKQLTLEACR 555
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
V+A+DIK+LQS DLPNLVSFRPE
Sbjct: 556 VSASDIKKLQSTDLPNLVSFRPE 578
>gi|359484681|ref|XP_002262830.2| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit-like [Vitis vinifera]
gi|296084545|emb|CBI25566.3| unnamed protein product [Vitis vinifera]
Length = 578
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/503 (72%), Positives = 421/503 (83%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIF+ V S CLT SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 76 MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS VTD GL LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 136 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+ L+NL KLDLERC+RIHGGL++LKGL KLESLNI++C CITDSD+K LSGLT
Sbjct: 196 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKGLTKLESLNIRYCKCITDSDLKALSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+LK LQ+SCS +TD GI+YLKGL KL LL++EGC VT +CLDSLSAL +L YLNLNRC L
Sbjct: 256 SLKELQMSCSNITDIGISYLKGLCKLMLLDVEGCHVTTSCLDSLSALVALSYLNLNRCGL 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT--- 297
SD GCEKFS + +LKVLN+GFN ITD CLVHLKGLTNLESLNLDSC I DEGL NLT
Sbjct: 316 SDVGCEKFSGLKNLKVLNMGFNNITDACLVHLKGLTNLESLNLDSCSIEDEGLANLTGLS 375
Query: 298 ---------------------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
GLT LES+NLSFT ++D L+KL GL+SLKSLNLDARQI
Sbjct: 376 LLKCLELSDTKVGSNGLCHLSGLTKLESLNLSFTLVTDSGLKKLCGLTSLKSLNLDARQI 435
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAA+TSLTGLTHLDLFGARI+D+G LR+FKNL++LEICGGGLTDAGVK+IK L+
Sbjct: 436 TDAGLAAITSLTGLTHLDLFGARISDAGTNCLRHFKNLQTLEICGGGLTDAGVKNIKGLA 495
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLTLLNLSQNCNLTDKTLE+ISGLT LVSLNVSNSRIT+ GL+HLKPLKNL SL+LESCK
Sbjct: 496 SLTLLNLSQNCNLTDKTLEMISGLTALVSLNVSNSRITNNGLQHLKPLKNLLSLSLESCK 555
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA++I++LQS LPNLVSFRPE
Sbjct: 556 VTASEIRKLQSTALPNLVSFRPE 578
>gi|356519276|ref|XP_003528299.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 1 [Glycine max]
Length = 577
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/502 (76%), Positives = 420/502 (83%), Gaps = 24/502 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQ IFN LVYSR LT SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75 MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+GL+NLVKLDLERC IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAACLDSL+ L +L LNLNRC L
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNL 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN----- 295
SD+GC+K S++ +LKVLNLGFN ITD CLVHLKGLT LESLNLDSC IGDEGLVN
Sbjct: 315 SDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGLE 374
Query: 296 -------------------LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L+GL++L+ INLSFT ISD SLRKL+GLSSLKSLNLDA QI
Sbjct: 375 QLNCLELSDTEVGSNGLHHLSGLSSLQKINLSFTMISDSSLRKLSGLSSLKSLNLDAYQI 434
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLA LTSLTGLT LDLFGARITD G YL+ FKNLRSLEICGG LTDAGVK+IK+LS
Sbjct: 435 TDAGLANLTSLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGVLTDAGVKNIKELS 494
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SL LNLSQN NLTDKTLELISGLTGLVSLNVSNSRIT+AGL+HLK LKNLRSLTLESCK
Sbjct: 495 SLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKTLKNLRSLTLESCK 554
Query: 457 VTANDIKRLQSRDLPNLVSFRP 478
VTANDIK+L+S LPNLVSFRP
Sbjct: 555 VTANDIKKLKSIYLPNLVSFRP 576
>gi|357458869|ref|XP_003599715.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355488763|gb|AES69966.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 585
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/511 (71%), Positives = 412/511 (80%), Gaps = 32/511 (6%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGSLFY 232
+L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSGCHEHTIPKLPALSN 314
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LNLNRC +SD GCE+FS++ LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEG
Sbjct: 315 LNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEG 374
Query: 293 LVN------------------------LTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L N L+GL++LE INLSFT +SD LRKL GLSSLKS
Sbjct: 375 LENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKS 434
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
LNLDA QITD GLA LTSLTGLT LDLFGARITD G YL+ FKNLRSLEIC GGLTDAG
Sbjct: 435 LNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAG 494
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
VK+IK+LSSL LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLR
Sbjct: 495 VKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLR 554
Query: 449 SLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
SLTLESCKVTANDIK+ + LPNLVSFRPE
Sbjct: 555 SLTLESCKVTANDIKKFKLIHLPNLVSFRPE 585
>gi|224120462|ref|XP_002331054.1| predicted protein [Populus trichocarpa]
gi|222872984|gb|EEF10115.1| predicted protein [Populus trichocarpa]
Length = 576
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/502 (70%), Positives = 413/502 (82%), Gaps = 23/502 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LT SLEAFRDCALQD+ LG+YPGV D WMDVI+SQGSSLL
Sbjct: 75 MLPRDLSQQIFNELVISHSLTAASLEAFRDCALQDVLLGEYPGVMDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD+GL LKDCSNLQ++ N+C ISD GL+HL GL+N+TSLS +++ ++T
Sbjct: 135 SVDLSDSDVTDAGLGLLKDCSNLQAIALNYCNNISDNGLKHLSGLTNITSLSLKKSCSVT 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+ L+NL LD+ERC+ IHGGLV+LKGL KLESLNI+ C CITD DMK +SGLT
Sbjct: 195 AEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLESLNIRCCKCITDMDMKAISGLT 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS + VTD G++YL+GLQKL +LNLEGC +T ACLDS+SAL +L YLNLNRC L
Sbjct: 255 NLKELQISNTNVTDVGVSYLRGLQKLIMLNLEGCNITTACLDSISALATLAYLNLNRCHL 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL- 299
DDGC+KFS + +LKVL+L FN++TD CLVHLKGL NLESLNLDSC IGDEG+ NL GL
Sbjct: 315 PDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKGLKNLESLNLDSCRIGDEGIANLAGLP 374
Query: 300 ----------------------TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
+LE++NLSFT ++DG LRKL+GL+SL+SLNLDARQIT
Sbjct: 375 LKSLELSDTIVGSSGLRHLSGIPHLENLNLSFTLVTDGGLRKLSGLTSLRSLNLDARQIT 434
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D GL ALTSLTGLT LDLFGARITDSG L+ FKNL+SLEICGGGLTDAGVK+IKDL
Sbjct: 435 DAGLTALTSLTGLTRLDLFGARITDSGTNCLKYFKNLKSLEICGGGLTDAGVKNIKDLVH 494
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
LT+LNLSQN NLTDKTLELISGLT LVSLNVSNS IT+ GLR+LKPLKNLR+LTLESCKV
Sbjct: 495 LTVLNLSQNTNLTDKTLELISGLTELVSLNVSNSLITNEGLRYLKPLKNLRALTLESCKV 554
Query: 458 TANDIKRLQSRDLPNLVSFRPE 479
TA++IK+LQS +LPNL S RPE
Sbjct: 555 TASEIKKLQSTELPNLASVRPE 576
>gi|388500850|gb|AFK38491.1| unknown [Medicago truncatula]
Length = 577
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/503 (71%), Positives = 407/503 (80%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L LNLNRC +
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRCNI 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN----- 295
S GCE+FS++ LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEGL N
Sbjct: 315 SGRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAGHK 374
Query: 296 -------------------LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L+GL++LE INLSFT +SD LRKL GLSSLKSLNLDA QI
Sbjct: 375 QLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAYQI 434
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLA LTSLTGLT LDLFGARITD G YL+ FKNLR LEIC GGLTDAGVK+IK+LS
Sbjct: 435 TDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRPLEICSGGLTDAGVKNIKELS 494
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SL LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RIT AGL+HLK LKNLR LTLESCK
Sbjct: 495 SLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITFAGLQHLKTLKNLRFLTLESCK 554
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VT NDIK+ + LPNLVSFRPE
Sbjct: 555 VTVNDIKKFKLIHLPNLVSFRPE 577
>gi|182407840|gb|ACB87911.1| F-box-containing protein 1 [Malus x domestica]
Length = 580
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/503 (71%), Positives = 425/503 (84%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LT+VSLEAFRDCAL+D+ LG+YP V D WM VI+SQGSSLL
Sbjct: 78 MLPRDVSQQIFNELVCSNSLTDVSLEAFRDCALEDIGLGEYPDVKDSWMGVISSQGSSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS+VTDSGL LK CSNLQ+L +N+C +S+ GL+H+ GLSNLTSLSF+R++AI+
Sbjct: 138 SVDLSGSEVTDSGLALLKGCSNLQALAYNYCDHVSEQGLKHISGLSNLTSLSFKRSDAIS 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+GL+NL KLDLERC+ IHGG V+LKGL KL+SLN++ C CITDSD+K +SGL
Sbjct: 198 AEGMRAFSGLLNLEKLDLERCSAIHGGFVHLKGLKKLKSLNVRCCRCITDSDLKTISGLI 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L LQ+S +TDSGI+YLKGL KL +LNLEGC VTA+CL S+SAL +L YLNLNRC L
Sbjct: 258 DLNELQLSNCNITDSGISYLKGLHKLRMLNLEGCNVTASCLQSISALVALAYLNLNRCSL 317
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
SD+GC+KFS + +LKVL+LGFNEITD CL++LKGLT+LESLNLDSC IGDEGL NL GLT
Sbjct: 318 SDEGCDKFSGLTNLKVLSLGFNEITDACLMYLKGLTSLESLNLDSCKIGDEGLANLAGLT 377
Query: 301 ------------------------NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
NLES+NLSFT ++D SL++L+GL+SLKSLNLDARQI
Sbjct: 378 HLKNLELSDTEVGSNGLRHLSGLKNLESLNLSFTLVTDSSLKRLSGLTSLKSLNLDARQI 437
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAA+TSLTGLTHLDLFGARI+DSGA +L+ FKNL+SLEICGGGLTDAGVK+IKDL
Sbjct: 438 TDAGLAAITSLTGLTHLDLFGARISDSGANHLKYFKNLQSLEICGGGLTDAGVKNIKDLV 497
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
LT LN+SQNCNLT+K+LELISGLT LVSLNVSNSRIT+ GL+HLKPLKNLRSLTLESCK
Sbjct: 498 CLTWLNISQNCNLTNKSLELISGLTALVSLNVSNSRITNEGLQHLKPLKNLRSLTLESCK 557
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA++I++LQS LPNLVSFRPE
Sbjct: 558 VTASEIRKLQSDALPNLVSFRPE 580
>gi|357468127|ref|XP_003604348.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355505403|gb|AES86545.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 573
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/505 (71%), Positives = 406/505 (80%), Gaps = 32/505 (6%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNA 118
SVDLS SDVTD GL +L+DC +L SL+ N+C QI D L SNLTSLSFRRN++
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDKFQIMDWSL------SNLTSLSFRRNDS 188
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I+AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS
Sbjct: 189 ISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSE 248
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L LNLNRC
Sbjct: 249 LASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRC 308
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN--- 295
+SD GCE+FS++ LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEGL N
Sbjct: 309 NISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAG 368
Query: 296 ---------------------LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L+GL++LE INLSFT +SD LRKL GLSSLKSLNLDA
Sbjct: 369 HKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAY 428
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
QITD GLA LTSLTGLT LDLFGARITD G YL+ FKNLRSLEIC GGLTDAGVK+IK+
Sbjct: 429 QITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAGVKNIKE 488
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
LSSL LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLRSLTLES
Sbjct: 489 LSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLES 548
Query: 455 CKVTANDIKRLQSRDLPNLVSFRPE 479
CKVTANDIK+ + LPNLVSFRPE
Sbjct: 549 CKVTANDIKKFKLIHLPNLVSFRPE 573
>gi|297844484|ref|XP_002890123.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297335965|gb|EFH66382.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 578
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/503 (74%), Positives = 429/503 (85%), Gaps = 25/503 (4%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDLCLG+YPGVND WMDVI+SQ +SLLS
Sbjct: 76 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLCLGEYPGVNDDWMDVISSQSTSLLS 135
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GLEHL GLSNLTSLSFRRN AITA
Sbjct: 136 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLEHLSGLSNLTSLSFRRNAAITA 195
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+N+ KLDLE+C IHGGLV+L+GL KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 196 QGMRALSNLVNMKKLDLEKCPGIHGGLVHLRGLTKLESLNIKWCNCITDADMEPLSELTN 255
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
L+SLQI CS++TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L +LNLNRC
Sbjct: 256 LRSLQICCSRITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALTGLMFLNLNRCNF 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-- 298
SD GCEKFS + +LK+LNLG N IT+ CLVHL+GLT LESLNLDSC IGDEGLV+L+G
Sbjct: 316 SDSGCEKFSDLINLKILNLGMNSITNSCLVHLRGLTKLESLNLDSCRIGDEGLVHLSGML 375
Query: 299 ----------------------LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L+NLESINLSFT ++D LRKL+GL+SL++LNLDAR +
Sbjct: 376 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 435
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 436 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 495
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK
Sbjct: 496 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCK 555
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 556 LSANDIRKLQATDLPNLVNFRPE 578
>gi|30684506|ref|NP_563980.2| leucine-rich repeat-containing protein [Arabidopsis thaliana]
gi|23297087|gb|AAN13089.1| unknown protein [Arabidopsis thaliana]
gi|332191234|gb|AEE29355.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]
Length = 585
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/503 (74%), Positives = 425/503 (84%), Gaps = 25/503 (4%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+NL KLDLE+C I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
L+SLQI CSK+TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L YLNLNRC
Sbjct: 263 LRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNF 322
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-- 298
SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGLV+L+G
Sbjct: 323 SDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGML 382
Query: 299 ----------------------LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L+NLESINLSFT ++D LRKL+GL+SL++LNLDAR +
Sbjct: 383 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 442
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 443 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 502
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK
Sbjct: 503 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCK 562
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 563 LSANDIRKLQATDLPNLVNFRPE 585
>gi|13507547|gb|AAK28636.1|AF360339_1 unknown protein [Arabidopsis thaliana]
Length = 585
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/503 (73%), Positives = 424/503 (84%), Gaps = 25/503 (4%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+NL KLDLE+C I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
L+ LQI CSK+TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L YLNLNRC
Sbjct: 263 LRRLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNF 322
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-- 298
SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGLV+L+G
Sbjct: 323 SDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGML 382
Query: 299 ----------------------LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L+NLESINLSFT ++D LRKL+GL+SL++LNLDAR +
Sbjct: 383 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 442
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 443 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 502
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK
Sbjct: 503 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCK 562
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 563 LSANDIRKLQATDLPNLVNFRPE 585
>gi|356519278|ref|XP_003528300.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 2 [Glycine max]
Length = 529
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/478 (73%), Positives = 388/478 (81%), Gaps = 24/478 (5%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQ IFN LVYSR LT SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75 MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+GL+NLVKLDLERC IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAACLDSL+ L +L LNLNRC L
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNL 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
SD+GC+K S++ +LKVLNLGFN ITD CLVHLKGLT LESLNLDSC IGDEGLVNL GL
Sbjct: 315 SDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGLE 374
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
L + LS T + L L+G LTGLT LDLFGARI
Sbjct: 375 QLNCLELSDTEVGSNGLHHLSG------------------------LTGLTDLDLFGARI 410
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD G YL+ FKNLRSLEICGG LTDAGVK+IK+LSSL LNLSQN NLTDKTLELISGL
Sbjct: 411 TDFGTNYLKKFKNLRSLEICGGVLTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGL 470
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478
TGLVSLNVSNSRIT+AGL+HLK LKNLRSLTLESCKVTANDIK+L+S LPNLVSFRP
Sbjct: 471 TGLVSLNVSNSRITNAGLQHLKTLKNLRSLTLESCKVTANDIKKLKSIYLPNLVSFRP 528
>gi|356548547|ref|XP_003542662.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 578
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/503 (67%), Positives = 401/503 (79%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQQIFNELV S CLTEVSLEAFRDCALQD+ LG+Y GVND WMDVI+SQG SLL
Sbjct: 76 ILPRDISQQIFNELVDSHCLTEVSLEAFRDCALQDIDLGEYVGVNDDWMDVISSQGLSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD++GS VTD GL LKDCS+LQ+L ++C Q S+ GL+H+ GLSNLTSLS R+++++
Sbjct: 136 SVDVAGSQVTDDGLRLLKDCSSLQALTLSYCDQFSEYGLKHISGLSNLTSLSIRKSSSVK 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L NL KLDLERC+ IHGG V+LKGL KLE LNI C C+TDSD+K +S L
Sbjct: 196 PDGMRAFSNLFNLEKLDLERCSEIHGGFVHLKGLKKLEYLNIGCCKCVTDSDIKSISELI 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S +TD GI YL+GL+KLT LN+EGC +TAACL+ + AL SL LNLNRC L
Sbjct: 256 NLKELQISNSSITDIGITYLRGLEKLTTLNVEGCNITAACLEFIHALTSLACLNLNRCGL 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
SDDG EK S + +LK L+L FN ITD CLVHLK LTNLE LNLDSC IGD GL NLTGLT
Sbjct: 316 SDDGFEKISGLKNLKRLSLAFNRITDACLVHLKDLTNLEYLNLDSCRIGDGGLANLTGLT 375
Query: 301 ------------------------NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LE +N+SFT ++D L++L+GL+ LKSLNLDARQI
Sbjct: 376 LLKSLVLSDTDIGNSGLRYISGLKKLEDLNVSFTTVTDNGLKRLSGLTQLKSLNLDARQI 435
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLA LTSL+GL LDLFGARI+D+G +LR+FKNL+SLEICGGGLTDAGVK+I+++
Sbjct: 436 TDAGLANLTSLSGLITLDLFGARISDNGTTFLRSFKNLQSLEICGGGLTDAGVKNIREIV 495
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLT LNLSQNCNLTDKTLELISG+T L SLNVSNSRIT+ GLRHLKPLKNLR+LTLESCK
Sbjct: 496 SLTQLNLSQNCNLTDKTLELISGMTALRSLNVSNSRITNEGLRHLKPLKNLRTLTLESCK 555
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA+ IK+LQS DLPNL+SFRPE
Sbjct: 556 VTASGIKKLQSTDLPNLISFRPE 578
>gi|357164542|ref|XP_003580088.1| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit-like [Brachypodium distachyon]
Length = 580
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/503 (67%), Positives = 402/503 (79%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV LTE SLEAFRDCALQD+CL +YPGV D WM+V+ASQG SLL
Sbjct: 78 MLPRDLSQQIFNELVEWSYLTEESLEAFRDCALQDICLEEYPGVKDAWMEVVASQGQSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTDSGL LKDCSN+QSL N+C QIS+ GL+ L GLSNLTSLS ++ A+T
Sbjct: 138 SVDISCSDVTDSGLDVLKDCSNMQSLACNYCDQISEHGLKTLSGLSNLTSLSLKKCAAVT 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +IHGGLV+LKGL KLE+LN+++CNCITDSDMK LS LT
Sbjct: 198 AEGAKAFADLVNLVNLDLERCPKIHGGLVHLKGLRKLETLNMRYCNCITDSDMKYLSDLT 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YLKGL KL LNLEGC VTAACL+++S L SL LNLNRC +
Sbjct: 258 NLRELQLSCCKISDIGVSYLKGLSKLAHLNLEGCAVTAACLEAISGLASLILLNLNRCGI 317
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE--------- 291
D+GCE + LKVLNLGFN ITD CLVHLK L +LE LNLDSC IGDE
Sbjct: 318 YDEGCENLEGLVKLKVLNLGFNHITDACLVHLKELVSLECLNLDSCKIGDEGLLHLKGLL 377
Query: 292 ---------------GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
GL +L+GL NL+S+NLSFT ++D L+K+AGL+SLKSLNLD RQI
Sbjct: 378 QLRSLELSDTEVGSNGLRHLSGLRNLQSMNLSFTLVTDIGLKKVAGLNSLKSLNLDNRQI 437
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAAL LTGLTHLDLFGARITDSG LR FK L+SLE+CGG +TDAGVK+IKDL
Sbjct: 438 TDNGLAALAGLTGLTHLDLFGARITDSGTNCLRYFKELQSLELCGGLITDAGVKNIKDLK 497
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN NLTD+TLELISGLT LVSLN+SN+R+++AGL HLK L+NLRSL+L+SCK
Sbjct: 498 ALTLLNLSQNGNLTDRTLELISGLTALVSLNLSNTRVSNAGLHHLKLLQNLRSLSLDSCK 557
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA++IK++Q LPNL+S RPE
Sbjct: 558 VTASEIKKIQLASLPNLISVRPE 580
>gi|356562920|ref|XP_003549716.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 580
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/503 (67%), Positives = 400/503 (79%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQQIFNELV S CLT++SLEAFRDCALQD+ LG+Y GV+D WMDVI+SQG SLL
Sbjct: 78 ILPRDISQQIFNELVDSHCLTQLSLEAFRDCALQDIDLGEYVGVSDDWMDVISSQGLSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+SGS VTD+GL LKDCSNLQ+L NFC Q S+ GL+H+ GLSNLTSLS R+++ +
Sbjct: 138 SVDVSGSQVTDNGLRFLKDCSNLQALTLNFCDQFSEYGLKHISGLSNLTSLSIRKSSTVK 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L NL KLDLERC+ IHGG V+LKGL KLE LNI C C+ DSDMK +S L
Sbjct: 198 PDGMRAFSNLFNLEKLDLERCSDIHGGFVHLKGLKKLEYLNIGCCKCVMDSDMKSISELI 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S +TD GI YL+GL+ LT LN+EGC +TAACL+ + AL SL LNLNRC L
Sbjct: 258 NLKELQISNSSITDIGITYLRGLKMLTTLNVEGCNITAACLEFIHALASLACLNLNRCGL 317
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
SDDG EK S + +LK L+L FN ITD CLVHLKGLTNLE LNLD C IGD+GL NLTGLT
Sbjct: 318 SDDGFEKISGLKNLKRLSLAFNRITDACLVHLKGLTNLEYLNLDYCRIGDDGLANLTGLT 377
Query: 301 ------------------------NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LE +NLSFT ++D L++L+GL+ LKSLNLDARQI
Sbjct: 378 LLKSLVLSDTDIGNSGLRHISGLKKLEDLNLSFTTVTDHGLKRLSGLTQLKSLNLDARQI 437
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLA LTSL+GL LDLFGARI+D+G +LR+FK L+SLEICGGGLTDAGVK+I+++
Sbjct: 438 TDAGLANLTSLSGLIALDLFGARISDNGTTFLRSFKILQSLEICGGGLTDAGVKNIREIV 497
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLT LNLSQNCNLTDKTLELISG+T L SLNVSNSRIT+ GLR+LKPLKNLR+LTLESCK
Sbjct: 498 SLTQLNLSQNCNLTDKTLELISGMTALRSLNVSNSRITNEGLRYLKPLKNLRTLTLESCK 557
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA++IK+LQS DLPNL+SFRPE
Sbjct: 558 VTASEIKKLQSTDLPNLISFRPE 580
>gi|255583092|ref|XP_002532313.1| protein binding protein, putative [Ricinus communis]
gi|223527982|gb|EEF30065.1| protein binding protein, putative [Ricinus communis]
Length = 597
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/497 (69%), Positives = 397/497 (79%), Gaps = 25/497 (5%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S CLT+ +LEAFRDCALQD+ LG+YPGV D WMD+++SQGSSLL
Sbjct: 75 MLPRDLSQQIFNELVISHCLTDATLEAFRDCALQDILLGEYPGVKDSWMDIVSSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD+GL L+ CS+LQ++ N C IS+ GL+H+ GL NLTSLSF+R NA+T
Sbjct: 135 SVDLSDSDVTDTGLALLQACSSLQTMILNRCDCISECGLKHISGLKNLTSLSFKRCNAVT 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+ F+ L+NL KLDLERC +IHGGL +LKGL+KLESLNI+ C CI D DMK LS +T
Sbjct: 195 AEGMRGFSSLVNLEKLDLERCPQIHGGLAHLKGLLKLESLNIRCCKCIEDMDMKALSDIT 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S VTD G++YLKGLQKL +LNLEGC VT ACLDS+SAL +L YLNLNRC L
Sbjct: 255 NLKELQISNSNVTDLGVSYLKGLQKLIMLNLEGCNVTTACLDSISALVALTYLNLNRCNL 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
SDDGC KFS + +LKVL+LGFN ITD CLVHLKGL NLE+LNLDSC IGDEGL NLTGL
Sbjct: 315 SDDGCSKFSGLKNLKVLSLGFNNITDACLVHLKGLMNLENLNLDSCNIGDEGLANLTGLP 374
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSL------------------------NLDARQI 336
L+S+ LS T + LR L+GL+ L++L NLDARQI
Sbjct: 375 -LKSLELSDTEVGSNGLRHLSGLTLLENLNLSFTLVTDSGLRRLSGLLSLRSLNLDARQI 433
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAALT LTGL HLDLFGARI+DSG YL+ FKNL+SLEICGGGLTD GVK+IKDL
Sbjct: 434 TDAGLAALTRLTGLIHLDLFGARISDSGTKYLQYFKNLQSLEICGGGLTDDGVKNIKDLV 493
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
LT+LNLSQN NLTDKTLELISGLT LVSLNVSNS IT+ GL +LKPLKNLRSL+LESCK
Sbjct: 494 HLTVLNLSQNSNLTDKTLELISGLTELVSLNVSNSLITNEGLHYLKPLKNLRSLSLESCK 553
Query: 457 VTANDIKRLQSRDLPNL 473
VTA++I +LQS LPNL
Sbjct: 554 VTASEISKLQSTALPNL 570
>gi|357478391|ref|XP_003609481.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355510536|gb|AES91678.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 576
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/503 (68%), Positives = 399/503 (79%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQ IFNELV S CLTE SL AFRDCALQD+ LG+Y GVND WMDVIASQG SLL
Sbjct: 74 ILPRDISQLIFNELVESHCLTETSLNAFRDCALQDVYLGEYLGVNDGWMDVIASQGPSLL 133
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+VD+SGS+VTD GL LKDC NLQ+L N+C Q S+ GL+HL GLSNLTSLS R++ A+T
Sbjct: 134 AVDVSGSNVTDHGLRLLKDCLNLQALTLNYCDQFSEHGLKHLSGLSNLTSLSIRKSCAVT 193
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L+NL KLDLERC+ IHGG V+ KGL KLESLNI C C+TDSDMK +SG
Sbjct: 194 PDGMRAFSNLVNLEKLDLERCSDIHGGFVHFKGLKKLESLNIGCCKCVTDSDMKAISGFI 253
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S +TD GI+YL+GLQKL+ LN+EGC +TAAC + +SAL +L LNLNRC L
Sbjct: 254 NLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALACLNLNRCGL 313
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
SDDG EKFS + LK L+L FN+ITD CLVHLKGLT LE LNLDSC IGDEGLVNLTGLT
Sbjct: 314 SDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEGLVNLTGLT 373
Query: 301 ------------------------NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LE +NLSFT ++D L++L GL++LKSLNLDARQI
Sbjct: 374 LLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKSLNLDARQI 433
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLA LTSL+GL LDLFGARITDSG YLR+FKNL+SLEICGG LTDAGVK+I+++
Sbjct: 434 TDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIV 493
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLT LNLSQNC LTDKTLELISG+T L SLNVSNSR+T+ GLR+LKPLKNLR+L+LESCK
Sbjct: 494 SLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCK 553
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
V A DIK+L S DLPNL+SFRPE
Sbjct: 554 VNAADIKKLHSTDLPNLISFRPE 576
>gi|356550632|ref|XP_003543689.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 565
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 352/512 (68%), Positives = 401/512 (78%), Gaps = 34/512 (6%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG----------VNDKWMDV 51
LP D+SQ+IFN +VYS LT SL+ FRD ALQD+CLG+Y V+D WMDV
Sbjct: 54 LPPDLSQRIFNNMVYSSYLTPASLQPFRDSALQDICLGEYEYANGGGAAAAIVDDAWMDV 113
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
I+SQGSSLL +DLS SDVTD GL L C+N+ SL+ N C QISD GLE + GLSNL SL
Sbjct: 114 ISSQGSSLLHLDLSASDVTDHGLTFLGHCTNIISLNLNHCHQISDHGLECISGLSNLASL 173
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
SFRRN AI+AQG+ F+GLINLVKLDLERC IHG LV+++GL LESLN+ WCNC+ D
Sbjct: 174 SFRRNYAISAQGLNTFSGLINLVKLDLERCPGIHGSLVHIQGLTMLESLNLNWCNCLVDV 233
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
DMKPLS LTNLKSL+IS +KVTD GI++LKGLQKL LLNLEGC VT ACLDSL L +L
Sbjct: 234 DMKPLSVLTNLKSLEISFNKVTDFGISFLKGLQKLNLLNLEGCQVTTACLDSLEELPALS 293
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
LNL+RC LS+DGCEKFS++ +LKVLNLGFN+ITD CL HLKGLT L+SLNLDSC I DE
Sbjct: 294 NLNLSRCNLSNDGCEKFSRLENLKVLNLGFNDITDACLAHLKGLTKLKSLNLDSCRIEDE 353
Query: 292 GLV------------------------NLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
GLV +L+GL+NLE INLSFT ++D L KL GLSSLK
Sbjct: 354 GLVHLAGHQQLNCLELSDTGIGSNGLHHLSGLSNLEKINLSFTFVNDSGLSKLCGLSSLK 413
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
SLNLDARQ+TDTGLA+LTSLTGLT LDLFGARITD G YL+ FKNLR LEICGG LTD
Sbjct: 414 SLNLDARQVTDTGLASLTSLTGLTELDLFGARITDFGTNYLKCFKNLRLLEICGGELTDD 473
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
GVK+IK+LSSL LNLSQNCNLTD TLELISGLT L+SLNVSNS IT+AGL+HLK LKNL
Sbjct: 474 GVKNIKELSSLKSLNLSQNCNLTDTTLELISGLTDLISLNVSNSGITNAGLQHLKTLKNL 533
Query: 448 RSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
RSL+LESCKVTAN IK+LQS DLPNLVSFRP+
Sbjct: 534 RSLSLESCKVTANGIKKLQSTDLPNLVSFRPQ 565
>gi|326497793|dbj|BAJ98524.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 583
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 327/503 (65%), Positives = 394/503 (78%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLP DISQQIF+ELV S LTE SLE FRDCAL D+CLG+YPGV D WM+V+ASQ SLL
Sbjct: 81 MLPSDISQQIFDELVGSNRLTEESLETFRDCALHDICLGEYPGVTDAWMEVVASQRQSLL 140
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+VTD GL L DCS++QSL N+C ++S+ G+ L G SNLTSLSF+R++ +T
Sbjct: 141 SVDISCSEVTDGGLNFLSDCSSMQSLSCNYCDRVSEHGIGVLSGFSNLTSLSFKRSDGVT 200
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM FA L+NLV LDLE C +IHGGLV++KGL KLESLN+++CN ITDSD+K LS LT
Sbjct: 201 AEGMSVFADLVNLVNLDLECCLKIHGGLVHMKGLRKLESLNMRYCNYITDSDIKYLSDLT 260
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+S ++TD G++YL GL KLT LNLE CPVTAACL+++S L SL LNLNRC +
Sbjct: 261 NLKELQLSSCRITDLGVSYLTGLSKLTHLNLESCPVTAACLEAISGLASLMLLNLNRCGI 320
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE--------- 291
D+GCE F + LKVLNLGFN ITD CLVHLKGL NLESLNLDSC IGDE
Sbjct: 321 YDEGCESFEDLKKLKVLNLGFNHITDACLVHLKGLINLESLNLDSCKIGDEGLLHLKGLV 380
Query: 292 ---------------GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
GL +L+GL NL SINLSFT ++D ++K++ L+SLKS+NLD R I
Sbjct: 381 LLKSLELSDTAIGSNGLQHLSGLRNLHSINLSFTLVTDTGMKKISTLNSLKSVNLDNRLI 440
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAAL LTGLTHLDLFGAR+TD G ++LR FKNL SLE+CGG +TDAGVK+IKDL
Sbjct: 441 TDVGLAALIGLTGLTHLDLFGARVTDHGTSFLRYFKNLESLEVCGGSITDAGVKNIKDLK 500
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN LTDKTLELISGLT LVSLNVSNSR+++AG RHLK L+NLRSLTL+SC+
Sbjct: 501 ALTLLNLSQNAKLTDKTLELISGLTALVSLNVSNSRVSNAGFRHLKALQNLRSLTLDSCR 560
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VT N++K+L++ LPNL+S RPE
Sbjct: 561 VTVNEMKKLRATALPNLISVRPE 583
>gi|357150116|ref|XP_003575347.1| PREDICTED: F-box/LRR-repeat protein 14-like [Brachypodium
distachyon]
Length = 582
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 326/503 (64%), Positives = 395/503 (78%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LP D+SQQ+FN+LV S CL E SLE FRDCAL D+CLG++PGV D WM+V+ASQ SLL
Sbjct: 80 VLPSDLSQQVFNQLVDSNCLKEASLETFRDCALHDICLGEFPGVKDAWMEVVASQRQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+VTDSGL L+DCSN+QSL N+C QIS+ GL L G SNLTSLSF+R++ +T
Sbjct: 140 SVDISCSEVTDSGLNLLRDCSNMQSLVCNYCDQISEHGLGVLSGFSNLTSLSFKRSDGVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+ FA L+NLV LDLERC +IHGGLV+LKGL KLES+N+++CN ITDSD+K LS LT
Sbjct: 200 AEGMRVFANLVNLVNLDLERCLKIHGGLVHLKGLRKLESINMRYCNNITDSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+S ++TD G++YL+GL KL LNLE CPVTAACL +S L SL LNLNRC +
Sbjct: 260 NLKELQLSSCRITDLGVSYLRGLSKLIRLNLESCPVTAACLVDISGLASLMLLNLNRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD---------- 290
D+GCE F + LKVLNLGFN ITD CLVHLK L NLE LNLDSC +GD
Sbjct: 320 YDEGCESFKDLKKLKVLNLGFNYITDACLVHLKELINLEFLNLDSCKVGDAGLLHLKGLV 379
Query: 291 --------------EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
GL +L+GL L+ I+LSFT ++D ++K++ LSSLKS+NLD+R I
Sbjct: 380 LLKSLELSDTEVGSNGLRHLSGLRTLQRIDLSFTLVTDTGMKKISALSSLKSVNLDSRLI 439
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAALT LTGLTHLDLFGARITD+GA+ R FKNL SLE CGG +TD GVK+IK+L
Sbjct: 440 TDVGLAALTGLTGLTHLDLFGARITDNGASCFRYFKNLESLEACGGSITDVGVKNIKELK 499
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN NLTDKTLELISGLT LVSLNVSNSR+++AGLRHL L+NLRSLTL+SC+
Sbjct: 500 ALTLLNLSQNANLTDKTLELISGLTALVSLNVSNSRVSNAGLRHLNALQNLRSLTLDSCR 559
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTAN+I++LQ+ LPNL+SFRPE
Sbjct: 560 VTANEIRKLQATALPNLISFRPE 582
>gi|116310796|emb|CAH67587.1| OSIGBa0112M24.4 [Oryza sativa Indica Group]
gi|218195159|gb|EEC77586.1| hypothetical protein OsI_16540 [Oryza sativa Indica Group]
Length = 581
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 335/503 (66%), Positives = 396/503 (78%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV------ 294
D+GCE + LKVLNLGFN ITD CLVHLK L NLE LNLDSC IGDEGL
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLKGLL 378
Query: 295 ------------------NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+L+GL NL+SINLSFT ++D L+K++GL+SL+SLNLD RQI
Sbjct: 379 KLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLRSLNLDNRQI 438
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAALT LTGLTHLDLFGARITD+G L+ FKNL+SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDLK 498
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN NLTDK+LELISGLT LVSLNVSNSR++++GL HLKPL+NLRSL+LESCK
Sbjct: 499 ALTLLNLSQNGNLTDKSLELISGLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCK 558
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA +IK+LQ LPNLVS RPE
Sbjct: 559 VTAIEIKKLQLAALPNLVSVRPE 581
>gi|115447277|ref|NP_001047418.1| Os02g0613200 [Oryza sativa Japonica Group]
gi|47497632|dbj|BAD19701.1| leucine-rich repeat-like protein [Oryza sativa Japonica Group]
gi|113536949|dbj|BAF09332.1| Os02g0613200 [Oryza sativa Japonica Group]
gi|125582867|gb|EAZ23798.1| hypothetical protein OsJ_07510 [Oryza sativa Japonica Group]
gi|215704406|dbj|BAG93840.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 582
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 328/503 (65%), Positives = 398/503 (79%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV S LTE LE FRDCALQD+ LG+YPGVND WM+V+ASQ SLL
Sbjct: 80 VLPRDLSQQIFNELVASNRLTETLLETFRDCALQDIDLGEYPGVNDAWMEVVASQRHSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S++TDSGL L+DC N+QSL N+C IS+ GL L GLSNLTSLSF+ ++ IT
Sbjct: 140 SVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGILSGLSNLTSLSFKSSDGIT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+ M+AFA L+NLV LDLERC +IHGGLV+LKGL LESLN+++CN I DSD+K LS LT
Sbjct: 200 AEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ++C ++TD G++YL+GL KLT LNLEGCPVTAACL+++S L SL LNL+RC +
Sbjct: 260 NLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACLEAISGLASLVVLNLSRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE--------- 291
+GCE F + LKVLNLGFN ITD+CL HLK L NLESLNLDSC +GDE
Sbjct: 320 YGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESLNLDSCKVGDEGLLHLRGLM 379
Query: 292 ---------------GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
GL +L+GL NLESINLSFT ++D ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMKKISALNSLKSVNLDNRQI 439
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAALTSLTGLTHLDLFGARITD G + R FKNL SLE+CGG +TDAGVK+IKDL
Sbjct: 440 TDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLEVCGGLITDAGVKNIKDLK 499
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+L LNLSQN NLTDKTLELISGLT LVSLNVSN+R+++AGLRHLK L+NLRSL+L+SC+
Sbjct: 500 ALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNAGLRHLKDLQNLRSLSLDSCR 559
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VT +++K+LQ+ LPNL+S RPE
Sbjct: 560 VTTSEVKKLQATVLPNLISVRPE 582
>gi|115459280|ref|NP_001053240.1| Os04g0503500 [Oryza sativa Japonica Group]
gi|113564811|dbj|BAF15154.1| Os04g0503500 [Oryza sativa Japonica Group]
gi|215678755|dbj|BAG95192.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708842|dbj|BAG94111.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629150|gb|EEE61282.1| hypothetical protein OsJ_15365 [Oryza sativa Japonica Group]
Length = 581
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 334/503 (66%), Positives = 395/503 (78%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV------ 294
D+GCE + LKVLNLGFN ITD CLVHLK L NLE LNLDSC IGDEGL
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLKGLL 378
Query: 295 ------------------NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+L+GL NL+SINLSFT ++D L+K++GL+SL+SLNLD RQI
Sbjct: 379 KLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLRSLNLDNRQI 438
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAALT LTGLTHLDLFGARITD+G L+ FKNL+SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDLK 498
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN NLTDK+LELIS LT LVSLNVSNSR++++GL HLKPL+NLRSL+LESCK
Sbjct: 499 ALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCK 558
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA +IK+LQ LPNLVS RPE
Sbjct: 559 VTAIEIKKLQLAALPNLVSVRPE 581
>gi|125540271|gb|EAY86666.1| hypothetical protein OsI_08050 [Oryza sativa Indica Group]
Length = 582
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 328/503 (65%), Positives = 397/503 (78%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV S LTE LE F DCALQD+ LG+YPGVND WM+V+ASQ SLL
Sbjct: 80 VLPRDLSQQIFNELVASNRLTETLLETFWDCALQDIDLGEYPGVNDAWMEVVASQRHSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S++TDSGL L+DC N+QSL N+C IS+ GL L GLSNLTSLSF+ ++ IT
Sbjct: 140 SVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGILSGLSNLTSLSFKSSDGIT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+ M+AFA L+NLV LDLERC +IHGGLV+LKGL LESLN+++CN I DSD+K LS LT
Sbjct: 200 AEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ++C ++TD G++YL+GL KLT LNLEGCPVTAACL+++S L SL LNL+RC +
Sbjct: 260 NLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACLEAISGLASLVVLNLSRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE--------- 291
+GCE F + LKVLNLGFN ITD+CL HLK L NLESLNLDSC +GDE
Sbjct: 320 YGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESLNLDSCKVGDEGLLHLRGLM 379
Query: 292 ---------------GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
GL +L+GL NLESINLSFT ++D ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMKKISALNSLKSVNLDNRQI 439
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAALTSLTGLTHLDLFGARITD G + R FKNL SLE+CGG +TDAGVK+IKDL
Sbjct: 440 TDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLEVCGGLITDAGVKNIKDLK 499
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+L LNLSQN NLTDKTLELISGLT LVSLNVSN+RI++AGLRHLK L+NLRSL+L+SC+
Sbjct: 500 ALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRISNAGLRHLKDLQNLRSLSLDSCR 559
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VT +++K+LQ+ LPNL+S RPE
Sbjct: 560 VTTSEVKKLQATVLPNLISVRPE 582
>gi|242076388|ref|XP_002448130.1| hypothetical protein SORBIDRAFT_06g021780 [Sorghum bicolor]
gi|241939313|gb|EES12458.1| hypothetical protein SORBIDRAFT_06g021780 [Sorghum bicolor]
Length = 581
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 333/503 (66%), Positives = 397/503 (78%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDCALQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCALQDVCLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C +IS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDKISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +IHGGL++LKGL KLE LN+++CNCITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKIHGGLIHLKGLKKLEKLNMRYCNCITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISDFGVSYLRGLHKLGHLNLEGCSVTAACLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV------ 294
D+GCE + LK LNLGFN IT CL+HLK L +LE LNLDSC IGDEGL
Sbjct: 319 CDEGCENLEGLTKLKALNLGFNHITGACLIHLKDLISLECLNLDSCKIGDEGLFHLKGLI 378
Query: 295 ------------------NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+L+GL NL+SINLSFT ++D L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TDTGLA+LT+LTGLTHLDLFGARITDSG R FKNL+SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDTGLASLTNLTGLTHLDLFGARITDSGMNCFRFFKNLQSLEVCGGLITDAGVKNIKDLK 498
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN NLTDKTLELISGLT LVSLNVSNSR++++GL HLKPL NLRSL+LESC+
Sbjct: 499 ALTLLNLSQNGNLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKPLLNLRSLSLESCR 558
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA++I +L+ LPNL+S RPE
Sbjct: 559 VTASEIDKLRLVALPNLISVRPE 581
>gi|8927653|gb|AAF82144.1|AC034256_8 Contains similarity to F-box protein FBL2 from Homo sapiens
gb|AF176518 and contains multiple Leucine Rich PF|00560
repeats. ESTs gb|Z34572, gb|Z34571, gb|AI100681,
gb|AI100675, gb|AA395320, gb|AI100674, gb|AA651378,
gb|AA007067, gb|T46145, gb|T22090, gb|AI995016,
gb|H36884, gb|AI995066, gb|H37061, gb|T43537 come from
this gene [Arabidopsis thaliana]
Length = 568
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 354/510 (69%), Positives = 403/510 (79%), Gaps = 56/510 (10%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+NL KLDLE+C I GGLV+L+ L KLESLNIKWCNCITD+DM+P
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEP------ 256
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS-------ALGSLFYL 233
L GL KL LLNLEGC VTAACLD+L+ AL L YL
Sbjct: 257 ------------------LSGLNKLNLLNLEGCRHVTAACLDTLTGLYRHPHALAGLMYL 298
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
NLNRC SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGL
Sbjct: 299 NLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGL 358
Query: 294 VNLTG------------------------LTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
V+L+G L+NLESINLSFT ++D LRKL+GL+SL++L
Sbjct: 359 VHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTL 418
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
NLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD GV
Sbjct: 419 NLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGV 478
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
K+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRS
Sbjct: 479 KNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRS 538
Query: 450 LTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
LTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 539 LTLESCKLSANDIRKLQATDLPNLVNFRPE 568
>gi|226501144|ref|NP_001141453.1| uncharacterized protein LOC100273563 [Zea mays]
gi|194704638|gb|ACF86403.1| unknown [Zea mays]
gi|414586493|tpg|DAA37064.1| TPA: regulatory subunit [Zea mays]
Length = 581
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 327/503 (65%), Positives = 395/503 (78%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV------ 294
D+GCE + LK L+LGFN+ITD CL+HLK L NLE LNLDSC IGDEGL
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378
Query: 295 ------------------NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+L+GL NL+SINLSFT ++D L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TDTGLA+LT LTGLTHLDLFGARITDSG + R FKN++SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQSLEVCGGLITDAGVKNIKDLK 498
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN LTDKTLELISGLT LVSLNVSNSR++++GL HLKPL+NLRSL+LESC+
Sbjct: 499 ALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCR 558
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA+++ +L+ LPNL+S RPE
Sbjct: 559 VTASEMDKLRLVALPNLISVRPE 581
>gi|195647464|gb|ACG43200.1| regulatory subunit [Zea mays]
Length = 581
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 325/503 (64%), Positives = 393/503 (78%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDV DSG LKDCS++Q+L ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVIDSGFNLLKDCSSMQNLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV------ 294
D+GCE + LK L+LGFN+ITD CL+HLK L NLE LNLDSC IGDEGL
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378
Query: 295 ------------------NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+L+GL NL+SINLSFT ++D L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TDTGLA+LT LTGLTHLDLFGARITDSG + R FKN++SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQSLEVCGGLITDAGVKNIKDLK 498
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN LTDKTLELISGLT LVSLNVSNSR+++ GL HLKPL+NLRSL+LESC+
Sbjct: 499 ALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNLGLHHLKPLQNLRSLSLESCR 558
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA+++ +L+ LPNL+S RPE
Sbjct: 559 VTASEMDKLRLVALPNLISVRPE 581
>gi|255553315|ref|XP_002517700.1| F-box/LRR-repeat protein, putative [Ricinus communis]
gi|223543332|gb|EEF44864.1| F-box/LRR-repeat protein, putative [Ricinus communis]
Length = 529
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 351/503 (69%), Positives = 386/503 (76%), Gaps = 73/503 (14%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIFNELVYS+ L + ++EAFRDCALQDL LG+ PGVND WMDVI+SQG SLL
Sbjct: 76 MLPRDISQQIFNELVYSQRLNDATIEAFRDCALQDLHLGECPGVNDSWMDVISSQGISLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTDS GL +L+ +NL +L+F + I+
Sbjct: 136 SVDLSGSDVTDS-------------------------GLAYLKDCTNLQALNFNYCDQIS 170
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G L N+ L+KLESLNIKWCNCITD+DMK LSGL
Sbjct: 171 DPG------------------------LSNISDLLKLESLNIKWCNCITDADMKYLSGLV 206
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
LK LQISCSKVTD GI+YLKGL KL LLNLEGCPVT ACLDSLSAL +L YLNLNRC L
Sbjct: 207 KLKGLQISCSKVTDVGISYLKGLHKLNLLNLEGCPVTVACLDSLSALAALLYLNLNRCHL 266
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL- 299
SDDGCE FSK+G LKVLNLGFN+I+D CLVHLKGLTNLESLNLDSC I DEGL NLTGL
Sbjct: 267 SDDGCEAFSKLGRLKVLNLGFNDISDACLVHLKGLTNLESLNLDSCRIDDEGLANLTGLR 326
Query: 300 -----------------------TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
TNLESINLSFT I+DG +RKL+GLSSLKSLNLDARQI
Sbjct: 327 HLKCLVLSDTEVGSSGLRHLSGLTNLESINLSFTMITDGGIRKLSGLSSLKSLNLDARQI 386
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD+GLAALT+LTGLTHLDLFGARITDSG YLRNFKNL+SLEICGGGLTDAG+++IKDLS
Sbjct: 387 TDSGLAALTNLTGLTHLDLFGARITDSGTHYLRNFKNLQSLEICGGGLTDAGIRNIKDLS 446
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SL+LLNLSQNCNLTDK+LELISGLTGLVSLNVSNSRITSAGL+HLKPLKNL+SLTLESCK
Sbjct: 447 SLSLLNLSQNCNLTDKSLELISGLTGLVSLNVSNSRITSAGLQHLKPLKNLKSLTLESCK 506
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA DIK+LQS DLP LVSFRPE
Sbjct: 507 VTATDIKKLQSTDLPQLVSFRPE 529
>gi|70663921|emb|CAE02935.3| OSJNBa0014K14.7 [Oryza sativa Japonica Group]
Length = 557
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 306/482 (63%), Positives = 371/482 (76%), Gaps = 6/482 (1%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL- 299
D+GCE + LKVLNLGFN ITD CLVHLK L NLE LNLDSC IGDEGL +L
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLKVFH 378
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS--LTGLTHLDLFG 357
L++ N + + + +KL + + + + + + L+S LTGLTHLDLFG
Sbjct: 379 KTLKAENHTISLMQTSETKKLG---TFRHRSWEQWTSSSLWMVFLSSQGLTGLTHLDLFG 435
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
ARITD+G L+ FKNL+SLE+CGG +TDAGVK+IKDL +LTLLNLSQN NLTDK+LELI
Sbjct: 436 ARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELI 495
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
S LT LVSLNVSNSR++++GL HLKPL+NLRSL+LESCKVTA +IK+LQ LPNLVS R
Sbjct: 496 SRLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSVR 555
Query: 478 PE 479
PE
Sbjct: 556 PE 557
>gi|226505324|ref|NP_001147302.1| regulatory subunit [Zea mays]
gi|195609698|gb|ACG26679.1| regulatory subunit [Zea mays]
gi|413937767|gb|AFW72318.1| regulatory subunit isoform 1 [Zea mays]
gi|413937768|gb|AFW72319.1| regulatory subunit isoform 2 [Zea mays]
Length = 582
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 324/503 (64%), Positives = 399/503 (79%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LTE SL+ FRDCALQD+ LG+YPGV D WM+V+ASQ SLL
Sbjct: 80 MLPRDLSQQIFNELVNSNRLTEASLQVFRDCALQDIGLGEYPGVKDAWMEVVASQKQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+V DSG+ L+DCS++QSL N+C QIS+ GL L GLSNL+SLSF+R+NA+T
Sbjct: 140 SVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AFA L+NL+ LDLE C +IHGGL++LK L KLESLN+++CN I DSD+K L+ LT
Sbjct: 200 AEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+SC K+TD G++Y++GLQKLT LNLEGCPVTAACL+++S L SL LNLNRC +
Sbjct: 260 NLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVLLNLNRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV------ 294
DDGCE F + LKVLNLGFN ITD CLVHLK L +LESLNLDSC IGD+GL
Sbjct: 320 YDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNLDSCKIGDDGLSHLKGLV 379
Query: 295 ------------------NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+L+GL NL+SINLSFT ++D ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLQSLELSDTEVGNNGLQHLSGLRNLQSINLSFTLVTDIGVKKISVLNSLKSVNLDNRQI 439
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAAL SLT LTHLDLFGA ITD+G R FKNL SLE+CGG +TDAGVK+IKDL
Sbjct: 440 TDVGLAALISLTRLTHLDLFGACITDNGTNCFRYFKNLVSLEVCGGFVTDAGVKNIKDLK 499
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN NLTDKTLELISGLT L++LNVSNSR+++AGL+HL L NLRSL+L+S +
Sbjct: 500 ALTLLNLSQNANLTDKTLELISGLTALINLNVSNSRVSNAGLKHLNDLHNLRSLSLDSTR 559
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTAN++++L++ L NL+S RPE
Sbjct: 560 VTANEMRKLRATVLHNLISMRPE 582
>gi|302796665|ref|XP_002980094.1| hypothetical protein SELMODRAFT_419616 [Selaginella moellendorffii]
gi|302822036|ref|XP_002992678.1| hypothetical protein SELMODRAFT_162512 [Selaginella moellendorffii]
gi|300139524|gb|EFJ06263.1| hypothetical protein SELMODRAFT_162512 [Selaginella moellendorffii]
gi|300152321|gb|EFJ18964.1| hypothetical protein SELMODRAFT_419616 [Selaginella moellendorffii]
Length = 578
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 287/500 (57%), Positives = 357/500 (71%), Gaps = 24/500 (4%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRD++Q+I NELV ++ L+ +AF DCA+QD+ LG YPGV+D WM+VI SQ LL+
Sbjct: 77 LPRDLTQKILNELVQTQALSRELFQAFEDCAIQDIYLGYYPGVDDSWMEVIGSQKFCLLA 136
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGS VTD G+ L+ C N++ + N C ISD L + G +NLTSLSF++N IT
Sbjct: 137 VDFSGSMVTDEGVQCLQICENVEIICMNECKYISDISLSYFTGFTNLTSLSFQKNKLITP 196
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ AGL NL LDLERC +IH GLV +KGL KLE LN+ WCNCI SDMK LSGLTN
Sbjct: 197 AGMRHLAGLPNLKHLDLERCPKIHDGLVYIKGLTKLEKLNLGWCNCIRSSDMKQLSGLTN 256
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L LQIS SKV D GI +LK L+KL +LN+EGCPVT AC+D+++ L SL LNL C +S
Sbjct: 257 LLELQISRSKVKDFGITFLKDLKKLEVLNMEGCPVTFACMDTIAGLTSLTTLNLKSCYIS 316
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN------ 295
D GC K +G+LK LNL + ++D +V+LK L +L+ LNLDSC IGD+G+ N
Sbjct: 317 DFGCRKLEGLGNLKNLNLSYTNVSDAGMVYLKNLKSLQFLNLDSCKIGDQGVQNFKNLVN 376
Query: 296 ------------------LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
LTGL+ LES+N+S T ++D L K++GL+SLKSLN+D+RQIT
Sbjct: 377 LKSLDLSDSLIGNHALNFLTGLSKLESLNISSTMVTDMGLHKISGLTSLKSLNIDSRQIT 436
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
DTGL ALTSLT LTHLDLF ARITD G LR+FK L+SLE+CGGG+TD GVK +KDL+
Sbjct: 437 DTGLMALTSLTNLTHLDLFSARITDYGIGSLRHFKKLQSLEVCGGGITDVGVKSLKDLTD 496
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
LT LNLSQN LTD+ LE +SGLT LVSLNV NS +T+AGL+HL PLKNL SL L+SCKV
Sbjct: 497 LTYLNLSQNGQLTDQALEALSGLTKLVSLNVGNSSVTNAGLQHLLPLKNLTSLALQSCKV 556
Query: 458 TANDIKRLQSRDLPNLVSFR 477
T I++LQ+ LPNLV R
Sbjct: 557 TLWAIQKLQASSLPNLVIVR 576
>gi|168012567|ref|XP_001758973.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689672|gb|EDQ76042.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 584
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 277/502 (55%), Positives = 354/502 (70%), Gaps = 26/502 (5%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+PRD+ Q + +ELV + L+ +LE F DC+LQD+ L YPGV D W+ VI SQG SLL+
Sbjct: 81 VPRDLIQLVLDELVRRQLLSPTTLELFSDCSLQDVLLPDYPGVEDSWLQVIGSQGESLLA 140
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+S S VTD GL L+ C+NLQSL N C I+D GL L GLSNLT+LS R NN ITA
Sbjct: 141 LDISSSTVTDEGLSFLESCTNLQSLILNACESIADEGLTSLSGLSNLTTLSLRSNNMITA 200
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ F L++L LDL+RC I GG V LKGL LE LN+ WC + +SD+K LSGL N
Sbjct: 201 AGMQNFTHLVSLKNLDLQRCPSIQGGFVYLKGLTTLEKLNVGWCIGVRNSDIKHLSGLVN 260
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
LK LQIS SKV+DSG+A L GL KL L++EGC VT+ ++S+ L +++LN+N C L
Sbjct: 261 LKELQISRSKVSDSGLASLTGLTKLRSLSMEGCQAVTSKGMESIGGLTGVWHLNVNSCFL 320
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN----- 295
D G +K + +L+ LN+G+N +++ + LKGLTNLE LNLDSC IGD G+ N
Sbjct: 321 HDSGFQKLEGLINLRTLNMGYNNVSNSGMGFLKGLTNLERLNLDSCKIGDHGIENVKGLV 380
Query: 296 -------------------LTGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQ 335
LTGL NLES+NLSFT GI+D LR +A ++SL SLNLD++Q
Sbjct: 381 NLKMLDLSDTEIESAGLRFLTGLKNLESLNLSFTGGIADSGLRTIATITSLTSLNLDSKQ 440
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
ITDTGLAALT LTGL LDLFGARITD G A LR+FK L++LE+CGGG+TDAGV+ IKDL
Sbjct: 441 ITDTGLAALTGLTGLKTLDLFGARITDYGMACLRHFKKLQTLELCGGGITDAGVRSIKDL 500
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+SLT LNLSQN LTD +L+ +SG+ LVSLN++NSR+T+AGL+HL+PL NL SL L+ C
Sbjct: 501 TSLTSLNLSQNMRLTDNSLQYLSGMKNLVSLNLANSRVTNAGLQHLRPLTNLTSLALQDC 560
Query: 456 KVTANDIKRLQSRDLPNLVSFR 477
KVT ++RLQ+ LP+L R
Sbjct: 561 KVTLPAVERLQATYLPSLTVIR 582
>gi|168057635|ref|XP_001780819.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667754|gb|EDQ54376.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 564
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 272/497 (54%), Positives = 354/497 (71%), Gaps = 25/497 (5%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+PRD+ QQ+ N+LV + L+ V+LE F DCALQD+ L YPGV D W+D+I SQG SLL+
Sbjct: 62 VPRDLIQQVLNDLVRKQLLSPVTLELFSDCALQDVLLADYPGVEDFWLDIIGSQGESLLA 121
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+SGS VTD GL L+ C+NLQ+L N C ISD GL L GLSNLT+LS R +N ITA
Sbjct: 122 LDISGSPVTDDGLACLQSCTNLQTLSLNSCDHISDEGLSVLSGLSNLTTLSLRSSNLITA 181
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ F L++L LDLERC IHGG V L+GL LE LN+ WC + ++D+ L+G+ N
Sbjct: 182 AGMRNFTNLVSLKNLDLERCPLIHGGFVYLRGLTTLEKLNVGWCIGVRNADITHLAGIVN 241
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK LQIS SKV DSG+A LKG+ L L++EGCP+TA + +++ L +L +LN+N C L
Sbjct: 242 LKELQISRSKVNDSGVASLKGMTNLRSLSMEGCPITAQSMKTIAGLTTLCHLNINSCYLP 301
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
D GC+K + +L+ LNLG+NE+TD +V LKGLTNLE LNLDSC +GDEG+ ++ GL N
Sbjct: 302 DSGCQKLEGLINLRTLNLGYNELTDSGMVFLKGLTNLERLNLDSCKVGDEGIKHVKGLLN 361
Query: 302 ------------------------LESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQI 336
LE +NLSFT G++D L +A ++SL SLNLD++QI
Sbjct: 362 LRMLDLSDSEVGNVGLRFLSGLKKLEILNLSFTGGVTDIGLSTIATITSLTSLNLDSKQI 421
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TDTGLAALT LTGL +LDLFGA+ITD G A LR+FKNL+SLE+CGGG+TD GV IKDL+
Sbjct: 422 TDTGLAALTGLTGLKNLDLFGAKITDYGMARLRHFKNLQSLELCGGGITDVGVSSIKDLT 481
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
LT LNLS N LTD++L+ +SG+ LVSLNV+NS++T+AGL+HL+PL L SL L+ CK
Sbjct: 482 LLTSLNLSHNLRLTDRSLQYLSGMENLVSLNVANSKVTNAGLQHLRPLTKLTSLALQGCK 541
Query: 457 VTANDIKRLQSRDLPNL 473
VT + L++ LPNL
Sbjct: 542 VTRTAVDHLKATSLPNL 558
>gi|217074604|gb|ACJ85662.1| unknown [Medicago truncatula]
Length = 331
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 224/331 (67%), Positives = 259/331 (78%), Gaps = 24/331 (7%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
MK +SG NLK LQIS S +TD GI+YL+GLQKL+ LN+EGC +TAAC + +SAL +L
Sbjct: 1 MKAISGFINLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALAC 60
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LNLNRC LSDDG EKFS + LK L+L FN+ITD CLVHLKGLT LE LNLDSC IGDEG
Sbjct: 61 LNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEG 120
Query: 293 LVNLTGLT------------------------NLESINLSFTGISDGSLRKLAGLSSLKS 328
LVNLTGLT LE +NLSFT ++D L++L GL++LKS
Sbjct: 121 LVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKS 180
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
LNLDARQITD GLA LTSL+GL LDLFGARITDSG YLR+FKNL+SLEICGG LTDAG
Sbjct: 181 LNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAG 240
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
VK+I+++ SLT LNLSQNC LTDKTLELISG+T L SLNVSNSR+T+ GLR+LKPLKNLR
Sbjct: 241 VKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLR 300
Query: 449 SLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
+L+LESCKV A DIK+L S DLPNL+SFRPE
Sbjct: 301 TLSLESCKVNAADIKKLHSTDLPNLISFRPE 331
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 167/354 (47%), Gaps = 60/354 (16%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA---------- 121
SG I+LK+ S I+D G+ +LRGL L++L+ +ITA
Sbjct: 5 SGFINLKELQISNS-------SITDLGISYLRGLQKLSTLNV-EGCSITAACFEYISALA 56
Query: 122 --------------QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
G + F+GL L +L L LV+LKGL KLE LN+ C
Sbjct: 57 ALACLNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQ- 115
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D + L+GLT LKSL +S ++V +SGI Y+ GL KL LNL VT
Sbjct: 116 IGDEGLVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVT---------- 165
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
D+G ++ + +LK LNL +ITD L +L L+ L +L+L
Sbjct: 166 --------------DNGLKRLLGLTNLKSLNLDARQITDAGLANLTSLSGLITLDLFGAR 211
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTS 346
I D G L NL+S+ + ++D ++ + + SL LNL ++TD L ++
Sbjct: 212 ITDSGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIVSLTQLNLSQNCKLTDKTLELISG 271
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSL 398
+T L L++ +R+T+ G YL+ KNLR SLE C D H DL +L
Sbjct: 272 MTALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCKVNAADIKKLHSTDLPNL 325
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 133/228 (58%), Gaps = 4/228 (1%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ L+ + +TD+ L+HLK + L+ L+ + C QI D GL +L GL+ L SL + +
Sbjct: 85 LSLAFNKITDACLVHLKGLTKLEYLNLDSC-QIGDEGLVNLTGLTLLKSLVL-SDTEVGN 142
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G++ +GL L L+L + GL L GL L+SLN+ ITD+ + L+ L+
Sbjct: 143 SGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKSLNLD-ARQITDAGLANLTSLSG 201
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQL 240
L +L + +++TDSG YL+ + L L + G +T A + ++ + SL LNL++ C+L
Sbjct: 202 LITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIVSLTQLNLSQNCKL 261
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+D E S + +L+ LN+ + +T+E L +LK L NL +L+L+SC +
Sbjct: 262 TDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCKV 309
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 4/166 (2%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LS + VTD+GL L +NL+SL+ + QI+D GL +L LS L +L IT
Sbjct: 157 LNLSFTSVTDNGLKRLLGLTNLKSLNLD-ARQITDAGLANLTSLSGLITLDLF-GARITD 214
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLT 180
G NL L++ G+ N++ ++ L LN+ NC +TD ++ +SG+T
Sbjct: 215 SGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIVSLTQLNLSQ-NCKLTDKTLELISGMT 273
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
L+SL +S S+VT+ G+ YLK L+ L L+LE C V AA + L +
Sbjct: 274 ALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCKVNAADIKKLHS 319
>gi|14423508|gb|AAK62436.1|AF386991_1 Unknown protein [Arabidopsis thaliana]
gi|20148357|gb|AAM10069.1| unknown protein [Arabidopsis thaliana]
Length = 332
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 243/332 (73%), Positives = 276/332 (83%), Gaps = 25/332 (7%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLF 231
M+PLS LTNL+SLQI CSK+TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L
Sbjct: 1 MEPLSVLTNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLM 60
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
YLNLNRC SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDE
Sbjct: 61 YLNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDE 120
Query: 292 GLVNLTG------------------------LTNLESINLSFTGISDGSLRKLAGLSSLK 327
GLV+L+G L+NLESINLSFT ++D LRKL+GL+SL+
Sbjct: 121 GLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLR 180
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
+LNLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD
Sbjct: 181 TLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDT 240
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNL
Sbjct: 241 GVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNL 300
Query: 448 RSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
RSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 301 RSLTLESCKLSANDIRKLQATDLPNLVNFRPE 332
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 167/325 (51%), Gaps = 8/325 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ + S +TD G+ +LK + L L+ C ++ L+ L L+ L L+ R
Sbjct: 8 TNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRC 67
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N + G + F+ LINL L+L + LV+LKGL KLESLN+ C I D + L
Sbjct: 68 N-FSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCR-IGDEGLVHL 125
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
SG+ LKSL++S ++V +G+ +L GL L +NL VT + L LS L SL LNL+
Sbjct: 126 SGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLD 185
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++D G + + L L+L ITD HL+ L L+SL + G+ D G+ N+
Sbjct: 186 ARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNI 245
Query: 297 TG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+ + ++D +L ++GL+ L SLN+ +++ +GL L L L L L
Sbjct: 246 KDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTL 305
Query: 356 FGARITDSG-----AAYLRNFKNLR 375
+++ + A L N N R
Sbjct: 306 ESCKLSANDIRKLQATDLPNLVNFR 330
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 160/300 (53%), Gaps = 3/300 (1%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL+SL C +I+D G+ +L+GL+ L L+ +TA + L L+ L+L R
Sbjct: 8 TNLRSLQI-CCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNR 66
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
C G L+ L+ LN+ N IT+S + L GLT L+SL + ++ D G+ +L
Sbjct: 67 CNFSDSGCEKFSDLINLKILNLGM-NNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHL 125
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
G+ +L L L V + L LS L +L +NL+ ++D G K S + SL+ LNL
Sbjct: 126 SGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLD 185
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
+TD L L LT L L+L I D G +L L L+S+ + G++D ++ +
Sbjct: 186 ARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNI 245
Query: 321 AGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
LSSL LNL +TD L ++ LTGL L++ +R++ SG +L+ KNLRSL +
Sbjct: 246 KDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTL 305
>gi|414586494|tpg|DAA37065.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
Length = 400
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 203/322 (63%), Positives = 248/322 (77%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
D+GCE + LK L+LGFN+ITD CL+HLK L NLE LNLDSC IGDEGL +L GL
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378
Query: 301 NLESINLSFTGISDGSLRKLAG 322
L+++ LS T + LR L+G
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSG 400
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 131/263 (49%), Gaps = 2/263 (0%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
+L+ +DL G LK ++SL +C+ I++ +K LSG +NL SL I C+
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFS 249
VT G L L L+LE CP L L L L LNL C ++D + S
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
+ +L+ L L +I+ + +L+GL L LNL+ C + L ++ L +L +NLS
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSR 315
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
GI D L GL+ LK+L+L QITD L L L L L+L +I D G +L+
Sbjct: 316 CGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLK 375
Query: 370 NFKNLRSLEICGGGLTDAGVKHI 392
L++LE+ + G++H+
Sbjct: 376 GLIQLKNLELSDTEVGSNGLRHL 398
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 153/302 (50%), Gaps = 29/302 (9%)
Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
+TD+ M+ ++ +L S+ +SCS VTDSG LK + L + C ++ L +LS
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLS 181
Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+L L++ +C ++ +G + F+ L NL +L+L+
Sbjct: 182 GFSNLTSLSIKKCAAVTAEGAKAFAN------------------------LVNLVNLDLE 217
Query: 285 SCGIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
C + GL++L GL LE +NL + GI+D ++ L+ L++L+ L L + +I+ G++
Sbjct: 218 RCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSY 277
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L L L HL+L G +T + +L L + G+ D G +++K L+ L L+L
Sbjct: 278 LRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSL 337
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
N +TD L + L L LN+ + +I GL HLK L L++L L +V +N ++
Sbjct: 338 GFN-QITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLR 396
Query: 464 RL 465
L
Sbjct: 397 HL 398
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 309 FTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 366
+ G++D + +A SL S++L +TD+G L + + L + +I++ G
Sbjct: 119 YPGVTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLK 178
Query: 367 YLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L F NL SL I C +T G K +L +L L+L + + + L
Sbjct: 179 TLSGFSNLTSLSIKKCAA-VTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+ IT + +++L L NLR L L SCK++A + L+
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLR 279
>gi|413937766|gb|AFW72317.1| hypothetical protein ZEAMMB73_434085 [Zea mays]
Length = 403
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 212/324 (65%), Positives = 262/324 (80%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LTE SL+ FRDCALQD+ LG+YPGV D WM+V+ASQ SLL
Sbjct: 80 MLPRDLSQQIFNELVNSNRLTEASLQVFRDCALQDIGLGEYPGVKDAWMEVVASQKQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+V DSG+ L+DCS++QSL N+C QIS+ GL L GLSNL+SLSF+R+NA+T
Sbjct: 140 SVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AFA L+NL+ LDLE C +IHGGL++LK L KLESLN+++CN I DSD+K L+ LT
Sbjct: 200 AEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+SC K+TD G++Y++GLQKLT LNLEGCPVTAACL+++S L SL LNLNRC +
Sbjct: 260 NLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVLLNLNRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
DDGCE F + LKVLNLGFN ITD CLVHLK L +LESLNLDSC IGD+GL +L GL
Sbjct: 320 YDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNLDSCKIGDDGLSHLKGLV 379
Query: 301 NLESINLSFTGISDGSLRKLAGLS 324
L+S+ LS T + + L+ L+GLS
Sbjct: 380 LLQSLELSDTEVGNNGLQHLSGLS 403
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 140/267 (52%), Gaps = 4/267 (1%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
+L S+ ISCS+V DSGI L+ + L C ++ + L LS L +L L+ R
Sbjct: 137 SLLSVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSN 196
Query: 240 -LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
++ +G F+ + +L L+L L+HLK LT LESLN+ C I D + LT
Sbjct: 197 AVTAEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLT 256
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
LTNL+ + LS I+D + + GL L LNL+ +T L A++ L+ L L+L
Sbjct: 257 DLTNLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVLLNLNR 316
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
I D G K L+ L + +TDA + H+K+L SL LNL +C + D L +
Sbjct: 317 CGIYDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNL-DSCKIGDDGLSHL 375
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPL 444
GL L SL +S++ + + GL+HL L
Sbjct: 376 KGLVLLQSLELSDTEVGNNGLQHLSGL 402
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 292 GLVNLTGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
GL++L LT LES+N+ + I+D ++ L L++LK L L +ITD G++ + L L
Sbjct: 226 GLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQKL 285
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
THL+L G +T + + +L L + G+ D G ++ + L L +LNL N +T
Sbjct: 286 THLNLEGCPVTAACLEAISGLSSLVLLNLNRCGIYDDGCENFEGLKRLKVLNLGFN-YIT 344
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
D L + L L SLN+ + +I GL HLK L L+SL L +V N ++ L
Sbjct: 345 DACLVHLKELISLESLNLDSCKIGDDGLSHLKGLVLLQSLELSDTEVGNNGLQHL 399
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 315 GSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
G L L L+ L+SLN+ I D+ + LT LT L L L +ITD G +Y+R +
Sbjct: 225 GGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQK 284
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L L + G +T A ++ I LSSL LLNL++ C + D E GL L LN+ + I
Sbjct: 285 LTHLNLEGCPVTAACLEAISGLSSLVLLNLNR-CGIYDDGCENFEGLKRLKVLNLGFNYI 343
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
T A L HLK L +L SL L+SCK+ + + L+
Sbjct: 344 TDACLVHLKELISLESLNLDSCKIGDDGLSHLK 376
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 19/213 (8%)
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN------------LESINLS 308
FNE LV+ LT C + D GL G+ + L S+++S
Sbjct: 90 FNE-----LVNSNRLTEASLQVFRDCALQDIGLGEYPGVKDAWMEVVASQKQSLLSVDIS 144
Query: 309 FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAA 366
+ ++D + L SS++SL + QI+++GL L+ L+ L+ L + +T G
Sbjct: 145 CSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVTAEGMR 204
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
N NL +L++ G G+ H+KDL+ L LN+ + D ++ ++ LT L L
Sbjct: 205 AFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLTNLKDL 264
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
+S +IT G+ +++ L+ L L LE C VTA
Sbjct: 265 QLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTA 297
>gi|414586492|tpg|DAA37063.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
Length = 356
Score = 330 bits (846), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 176/273 (64%), Positives = 215/273 (78%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
D+GCE + LK L+LGFN+ITD CL+HLK
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLK 351
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 133/264 (50%), Gaps = 9/264 (3%)
Query: 187 ISCSKVTDSGIAYLKG--LQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDD 243
+ C +T++ + + LQ + L + G VT A ++ +++ G SL ++L+ ++D
Sbjct: 93 VECGCLTEASLGAFRDCDLQDICLGDYPG--VTDAWMEVVASQGQSLLSVDLSCSDVTDS 150
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTN 301
G S++ L + ++I++ L L G +NL SL++ C + EG L N
Sbjct: 151 GFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVN 210
Query: 302 LESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
L +++L I+ G + K ITD+ + L+ LT L L L +I
Sbjct: 211 LVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKI 270
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
+ G +YLR L L + G +T ++ I +L+SL LLNLS+ C + D+ E + GL
Sbjct: 271 SAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSR-CGICDEGCENLKGL 329
Query: 421 TGLVSLNVSNSRITSAGLRHLKPL 444
T L +L++ ++IT A L HLK +
Sbjct: 330 TKLKALSLGFNQITDACLIHLKVM 353
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 109/203 (53%), Gaps = 4/203 (1%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLS-FT 310
SL ++L +++TD LK ++++SL D C I + GL L+G +NL S+++
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 369
++ + A L +L +L+L+ + GL L L L L+L + ITDS YL
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
+ NLR L++ ++ GV +++ L L LNL + C +T LE+IS L LV LN+S
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNL-EGCAVTAVCLEVISELASLVLLNLS 314
Query: 430 NSRITSAGLRHLKPLKNLRSLTL 452
I G +LK L L++L+L
Sbjct: 315 RCGICDEGCENLKGLTKLKALSL 337
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 105/239 (43%), Gaps = 24/239 (10%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
+L+ +DL G LK ++SL +C+ I++ +K LSG +NL SL I C+
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
VT G L L L+LE CP L L L L LNL C
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYC------------ 243
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
N ITD + +L LTNL L L SC I G+ L GL L +NL
Sbjct: 244 -----------NGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGC 292
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
++ L ++ L+SL LNL I D G L LT L L L +ITD+ +L+
Sbjct: 293 AVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLK 351
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 4/230 (1%)
Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
+TD+ M+ ++ +L S+ +SCS VTDSG LK + L + C ++ L +LS
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLS 181
Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+L L++ +C ++ +G + F+ + +L L+L + L+HLKGL LE LNL
Sbjct: 182 GFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLR 241
Query: 285 SC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
C GI D + L+ LTNL + LS IS + L GL L LNL+ +T L
Sbjct: 242 YCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEV 301
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
++ L L L+L I D G L+ L++L + +TDA + H+K
Sbjct: 302 ISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLK 351
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-A 358
+L S++LS + ++D L SS++SL D QI++ GL L+ + LT L + A
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+T GA N NL +L++ + G+ H+K L L LNL +TD ++ +S
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
LT L L +S+ +I++ G+ +L+ L L L LE C VTA
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTA 296
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 309 FTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 366
+ G++D + +A SL S++L +TD+G L + + L + +I++ G
Sbjct: 119 YPGVTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLK 178
Query: 367 YLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L F NL SL I C +T G K +L +L L+L + + + L
Sbjct: 179 TLSGFSNLTSLSIKKCAA-VTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+ IT + +++L L NLR L L SCK++A + L+
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLR 279
>gi|255088361|ref|XP_002506103.1| predicted protein [Micromonas sp. RCC299]
gi|226521374|gb|ACO67361.1| predicted protein [Micromonas sp. RCC299]
Length = 610
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 188/495 (37%), Positives = 281/495 (56%), Gaps = 27/495 (5%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LP D+SQ++F +LV +R LT F C L + L YPG+ D W+ V+A+ +L
Sbjct: 100 VLPSDLSQRVFEDLVQTRRLTARVTGDFIGCHLTEANLRSYPGLTDDWLAVLATSAPNLS 159
Query: 61 SVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
S++LSG + +T G L C L+SLD + C ++D L + +S L L+ + I
Sbjct: 160 SINLSGCAALTPDGFNALAACVELESLDVSECPGVNDNALAAVASMSRLRRLACAGCDGI 219
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T G++ +G L ++LERC + GLV L GL +LE L+ WCN + +D+ L L
Sbjct: 220 TGAGLRYVSGATKLRCVNLERCNGLTNGLVYLSGLTELERLDAGWCNHVDSNDVTSLRSL 279
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
LK L ++ +KV D G+A + L L LNL GC +T L L +L L+L C+
Sbjct: 280 KKLKHLNLARTKVDDQGVATIGSLSALETLNLAGCRITDGACFLLGGLTALKELSLEWCR 339
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE-------- 291
+ D G + + + L+VLNLG++ +TDE + HL L L ++LDSC +GD+
Sbjct: 340 VGDGGVRRLASLAKLEVLNLGYSSVTDEGVQHLAPLVKLREIDLDSCQVGDDACKALAEW 399
Query: 292 ----------------GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
GL ++ LT L +NLS++ +SD + L +S++SL+LD R
Sbjct: 400 PNLEDVNLSDTAVGNLGLKRISKLTRLRRVNLSYSNVSDDGVMYLENAASIRSLSLDTRM 459
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+TD GL L L + LDLFGARITD GA +LR+ L++LE+CGGG+TDAGVKHI D
Sbjct: 460 VTDEGLGYLAKLKDIEELDLFGARITDEGAKHLRHMPRLKTLELCGGGITDAGVKHIGDA 519
Query: 396 -SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
LTLLNL QN ++D + + L L SLN+ SRI++ G+ L L NL +L L+
Sbjct: 520 CRELTLLNLGQNFRISDAAVPFLLQLHKLGSLNLQYSRISNEGVTQLSQLSNLTTLALKG 579
Query: 455 C-KVTANDIKRLQSR 468
C +V+ ++ L+++
Sbjct: 580 CNRVSQAAVEELRAK 594
>gi|24461848|gb|AAN62335.1|AF506028_2 CTV.1 [Citrus trifoliata]
Length = 205
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 187/248 (75%), Positives = 189/248 (76%), Gaps = 53/248 (21%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
LGSLFYLNLNRCQLSDDGCEKFS NLGFNEITDECLV+ +LDSC
Sbjct: 1 LGSLFYLNLNRCQLSDDGCEKFS--------NLGFNEITDECLVY----------HLDSC 42
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
GIGDEGLVN LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS
Sbjct: 43 GIGDEGLVNY----------LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 92
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL LLNLSQN
Sbjct: 93 ----AHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLALLNLSQN 148
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
CNLTDKTLE VSNSRITSAGLRH LESCKVTANDIKRLQ
Sbjct: 149 CNLTDKTLEY-----------VSNSRITSAGLRH----------PLESCKVTANDIKRLQ 187
Query: 467 SRDLPNLV 474
SRDLPNL
Sbjct: 188 SRDLPNLF 195
>gi|147832652|emb|CAN74892.1| hypothetical protein VITISV_002002 [Vitis vinifera]
Length = 300
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/184 (81%), Positives = 168/184 (91%)
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
VN+ GL NLESINLSFT ++D LRK + LSSLKSLNLDA QITD GLAALTSLTGLTH
Sbjct: 110 FVNMEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTH 169
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
LDLFGARITDSG +YLRNFKNL+SLEICGGGLTDAGVK+IKDL+ LT+LNLSQNCNLTDK
Sbjct: 170 LDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDK 229
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
+LELISGLT LVSL+VSNSRIT+AGL+HLK LKNL+SLTL+SCKVT NDIK+LQS+DLPN
Sbjct: 230 SLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTVNDIKKLQSKDLPN 289
Query: 473 LVSF 476
L +F
Sbjct: 290 LPAF 293
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 24/165 (14%)
Query: 148 LVNLKGLMKLESLNIKW-----------------------CNCITDSDMKPLSGLTNLKS 184
VN++GL LES+N+ + + ITD+ + L+ LT L
Sbjct: 110 FVNMEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTH 169
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDD 243
L + +++TDSG +YL+ + L L + G +T A + ++ L L LNL++ C L+D
Sbjct: 170 LDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDK 229
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
E S + +L L++ + IT+ L HLK L NL+SL LDSC +
Sbjct: 230 SLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKV 274
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 126/265 (47%), Gaps = 32/265 (12%)
Query: 152 KGLMKLESLNIKWCNCI---TDSDMKPLSGLTNLKSLQ---------ISCSKVTDSGIAY 199
+G + LE NI W + D+ + GL +++ + I K+T S I +
Sbjct: 45 EGSLDLEKANI-WLGTLLLERSEDIYRMKGLLSVQGMDERFVFQDYLILFYKITTSLIPF 103
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
+ L +N+EG L +L +NL+ ++D G K S + SLK LNL
Sbjct: 104 FYTI--LLFVNMEG-------------LANLESINLSFTAVTDSGLRKSSALSSLKSLNL 148
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
++ITD L L LT L L+L I D G L NL+S+ + G++D ++
Sbjct: 149 DAHQITDAGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKN 208
Query: 320 LAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
+ L+ L LNL +TD L ++ LT L L + +RIT++G +L+ KNL+SL
Sbjct: 209 IKDLTCLTVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLT 268
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNL 403
+ +T V IK L S L NL
Sbjct: 269 LDSCKVT---VNDIKKLQSKDLPNL 290
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S++LS + VTDSGL S+L+SL+ + QI+D GL L L+ LT L
Sbjct: 117 ANLESINLSFTAVTDSGLRKSSALSSLKSLNLD-AHQITDAGLAALTSLTGLTHLDLF-G 174
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSDMKP 175
IT G NL L++ G+ N+K L L LN+ NC +TD ++
Sbjct: 175 ARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQ-NCNLTDKSLEL 233
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+SGLT L SL +S S++T++G+ +LK L+ L L L+ C VT
Sbjct: 234 ISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTV 276
>gi|384254255|gb|EIE27729.1| RNI-like protein, partial [Coccomyxa subellipsoidea C-169]
Length = 515
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 179/494 (36%), Positives = 268/494 (54%), Gaps = 42/494 (8%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP D++Q + +EL+Y+ L + L F + +L LG+ GV D W+ +A QG+ +
Sbjct: 24 LPADLAQLVLDELIYTASLDQEGLALFSRQHIYNLKLGECAGVEDDWLRHLAPQGTGMHG 83
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ ++ SG L +NL+ L C +S L L LS +TSL+ + + I+
Sbjct: 84 LFIT----KHSGAAGL---TNLRDLSLQGCEGLSS--LSALTDLSKVTSLNLKGCSGIS- 133
Query: 122 QGMKAFAGLINLVKLD--LERC-TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
G++ +G + L + C + G G+ +LE+L++ WC+ ITD+D+K L+
Sbjct: 134 -GLRHLSGALFCASLGSVAQMCGSEYWSG--AWAGMKQLENLDLSWCSGITDADVKALAA 190
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR 237
LT + LQ+S + V DSGI L+ + +L L L GC ++ + S+SAL SL LNL
Sbjct: 191 LTAITGLQLSRTLVADSGIFALRSMSRLRCLGLAGCSGISNGAVGSVSALTSLEELNLEW 250
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
C +S G S + L+ LN+ + D L LTNL +LNLDSC + D GL +++
Sbjct: 251 CTVSVKGLSHLSTLTELRSLNVAYTTAGDNALAAWTSLTNLRTLNLDSCPVSDRGLHHIS 310
Query: 298 GLTNLESINLSFTGISDGS-------------------------LRKLAGLSSLKSLNLD 332
LTNLE +NLS T I+D L +A L++L L+LD
Sbjct: 311 ELTNLEDVNLSDTAITDQGMIAFAPLKGMQRLNLSYTAGVGDLGLAAVARLTALTELHLD 370
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
R TD GL + LT L LDLFGARITD+G +LR F+ L LEICGGG++D GVK +
Sbjct: 371 GRSFTDVGLRTIAPLTQLQTLDLFGARITDAGCVHLRPFRRLERLEICGGGISDEGVKEL 430
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L+ L L+L+QN +TD+ +SGL+ L LN++ +++T G+ L+ L NL SL L
Sbjct: 431 IWLTGLQHLSLAQNARITDRASLFLSGLSQLRGLNLTGTQLTGNGILPLRSLTNLESLCL 490
Query: 453 ESCKVTANDIKRLQ 466
+ +V RLQ
Sbjct: 491 KRTRVKQAAADRLQ 504
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 165/345 (47%), Gaps = 27/345 (7%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L G+ D + +A+ +++ + LS + V DSG+ L+ S L+ L C
Sbjct: 169 LENLDLSWCSGITDADVKALAAL-TAITGLQLSRTLVADSGIFALRSMSRLRCLGLAGCS 227
Query: 93 QISDGG---------LEHL---------RGLSNLTSLSFRR--NNAITAQG---MKAFAG 129
IS+G LE L +GLS+L++L+ R N A T G + A+
Sbjct: 228 GISNGAVGSVSALTSLEELNLEWCTVSVKGLSHLSTLTELRSLNVAYTTAGDNALAAWTS 287
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L NL L+L+ C GL ++ L LE +N+ ITD M + L ++ L +S
Sbjct: 288 LTNLRTLNLDSCPVSDRGLHHISELTNLEDVNLS-DTAITDQGMIAFAPLKGMQRLNLSY 346
Query: 190 SK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ V D G+A + L LT L+L+G T L +++ L L L+L +++D GC
Sbjct: 347 TAGVGDLGLAAVARLTALTELHLDGRSFTDVGLRTIAPLTQLQTLDLFGARITDAGCVHL 406
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLTNLESINL 307
L+ L + I+DE + L LT L+ L+L + I D + L+GL+ L +NL
Sbjct: 407 RPFRRLERLEICGGGISDEGVKELIWLTGLQHLSLAQNARITDRASLFLSGLSQLRGLNL 466
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ T ++ + L L++L+SL L ++ L L H
Sbjct: 467 TGTQLTGNGILPLRSLTNLESLCLKRTRVKQAAADRLQPLLPRIH 511
>gi|59802533|gb|AAX07510.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 550
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 172/423 (40%), Positives = 244/423 (57%), Gaps = 8/423 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S++L + VTD+GL LK + L SLD +++D GL+ L+GL++LT L R
Sbjct: 90 TNLTSLNLGSTGVTDAGLQDLKGLNKLASLDLR-GTEVTDVGLQELKGLNSLTELRLRAT 148
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T G++ GL NL LDL R TR+ GL LKGL L SL+++ +TD+ +K
Sbjct: 149 E-VTNVGLQELKGLNNLASLDL-RDTRVTDVGLQELKGLNNLASLDLRDTK-VTDTGLKE 205
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L GLTNL +L + ++VTD G+ L GL KL L+L VT L L + L L+L
Sbjct: 206 LKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLSRTGVTGTGLIELKSFTKLALLDL 265
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+ +++D G + + SL L+LG +TD L LKGLT+L SL+L D GL
Sbjct: 266 SGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLKELKGLTSLTSLHLSGTRTTDAGLQE 325
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L GLTNL S++LS T ++D L++L + L SL+L +TDTGL L LT LT LDL
Sbjct: 326 LNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTSLHLGGTGVTDTGLKELKGLTNLTALDL 385
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
F ++TD G L L SL + +TD G+K +K+L+ L LL+LS +TD L+
Sbjct: 386 FSTQVTDVGLQELNGLTKLTSLYLSAAAITDTGLKELKELTQLALLDLS-GTRVTDAGLQ 444
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
+SGLT L L + +R+T AGL+ LK L +L SL L +VT ++ L L NL +
Sbjct: 445 ELSGLTKLAFLRLGGTRVTDAGLKELKGLTSLTSLHLSGTRVTDAGLQELSG--LTNLTT 502
Query: 476 FRP 478
P
Sbjct: 503 TGP 505
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 221/387 (57%), Gaps = 5/387 (1%)
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
F Q++D GL+ L+GL+NLTSL +T +G+K L NL LDL GL
Sbjct: 2 FSTQVTDAGLQELKGLANLTSLGLSATK-VTNEGLKELKELTNLTALDLFSTGVTDTGLQ 60
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
LKGL L SLN+ +T + ++ L GLTNL SL + + VTD+G+ LKGL KL L
Sbjct: 61 ELKGLTNLTSLNL-GVTQVTGAGLQELKGLTNLTSLNLGSTGVTDAGLQDLKGLNKLASL 119
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+L G VT L L L SL L L ++++ G ++ + +L L+L +TD L
Sbjct: 120 DLRGTEVTDVGLQELKGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTRVTDVGL 179
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
LKGL NL SL+L + D GL L GLTNL +++L T ++D L++L GL+ L SL
Sbjct: 180 QELKGLNNLASLDLRDTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLASL 239
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+L +T TGL L S T L LDL G R+TD+G L+ +L SL + G +TD G+
Sbjct: 240 DLSRTGVTGTGLIELKSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGL 299
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
K +K L+SLT L+LS TD L+ ++GLT L SL++S++R+T GL+ LK L S
Sbjct: 300 KELKGLTSLTSLHLS-GTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTS 358
Query: 450 LTLESCKVTANDIKRLQSRDLPNLVSF 476
L L VT +K L+ L NL +
Sbjct: 359 LHLGGTGVTDTGLKELKG--LTNLTAL 383
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 154/410 (37%), Positives = 233/410 (56%), Gaps = 4/410 (0%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ LS + VT+ GL LK+ +NL +LD F ++D GL+ L+GL+NLTSL+
Sbjct: 18 ANLTSLGLSATKVTNEGLKELKELTNLTALDL-FSTGVTDTGLQELKGLTNLTSLNLGVT 76
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G++ GL NL L+L GL +LKGL KL SL+++ +TD ++ L
Sbjct: 77 Q-VTGAGLQELKGLTNLTSLNLGSTGVTDAGLQDLKGLNKLASLDLRGTE-VTDVGLQEL 134
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
GL +L L++ ++VT+ G+ LKGL L L+L VT L L L +L L+L
Sbjct: 135 KGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTRVTDVGLQELKGLNNLASLDLR 194
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+++D G ++ + +L L+L ++TD L L GLT L SL+L G+ GL+ L
Sbjct: 195 DTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLSRTGVTGTGLIEL 254
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
T L ++LS T ++D L +L GL+SL SL+L ++TD GL L LT LT L L
Sbjct: 255 KSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLKELKGLTSLTSLHLS 314
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G R TD+G L NL SL + +TD G+K +K + LT L+L +TD L+
Sbjct: 315 GTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTSLHLG-GTGVTDTGLKE 373
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+ GLT L +L++ ++++T GL+ L L L SL L + +T +K L+
Sbjct: 374 LKGLTNLTALDLFSTQVTDVGLQELNGLTKLTSLYLSAAAITDTGLKELK 423
>gi|147821391|emb|CAN67937.1| hypothetical protein VITISV_014237 [Vitis vinifera]
Length = 216
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/178 (64%), Positives = 138/178 (77%), Gaps = 17/178 (9%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIF+ V S CLT SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 47 MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 106
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS VTD GL LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 107 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 166
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
A+GM+AF+ L+NL KLDLERC+RIHGGL++LK DSD+K LSG
Sbjct: 167 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLK-----------------DSDLKALSG 207
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
+L S+++ G +TD G+ +KD S++ +L+ + +++ L+ ISGL+ L SL+ S
Sbjct: 104 SLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSN 163
Query: 433 -ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+T+ G+R L NL L LE C + L+ DL L
Sbjct: 164 TVTAEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKDSDLKAL 205
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 73/135 (54%), Gaps = 6/135 (4%)
Query: 325 SLKSLNL-DARQITDTGLAALTSLT-GLTHLDLFGARITDSGAAYLRNFKNLR--SLEIC 380
+++ +NL + ++ D+ + ++S L +DL G+ +TD G + L++ N++ S C
Sbjct: 78 AIQDVNLGEYPEVNDSWMDIISSQGLSLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYC 137
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
+++ G+K+I LS+LT L+ ++ +T + + S L L L++ GL H
Sbjct: 138 -DQISEPGLKNISGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERCSRIHGGLIH 196
Query: 441 LKPLKNLRSLTLESC 455
LK +L++L+ C
Sbjct: 197 LKD-SDLKALSGNVC 210
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ I++QG+ +L+ +DL + GL LK ++ L+ +C+ I++ +K +
Sbjct: 96 DIISSQGL-------SLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNI 148
Query: 177 SGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC 214
SGL+NL SL S VT G+ L L L+LE C
Sbjct: 149 SGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERC 187
>gi|303286333|ref|XP_003062456.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455973|gb|EEH53275.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 519
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 165/517 (31%), Positives = 262/517 (50%), Gaps = 50/517 (9%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP D++Q++F+ L + LT +L F C L D V D ++ + +SL
Sbjct: 1 LPPDLAQRVFDVLARANELTVDALGRFEGCFLSDASGLDANVVTDAFLAALRDVATSLSR 60
Query: 62 VDLSGSDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+DL+G D SG + + C+ + ++ + C + D L + ++L S N+A+
Sbjct: 61 IDLTGCDALTSGGLRSNFPCCARMTIVNVSECAGVDDDALAAMASATHLKSFFCEGNDAV 120
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM------ 173
T G++ A L +L +L ERC R+ G+ +L GL L SLN+ WC ++ +
Sbjct: 121 TGSGVRHLASLTSLRELSFERCARLREGMCHLAGLRNLRSLNLGWCGKLSAKETSRALTP 180
Query: 174 -------KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
P S L + + T + L G +L LN+ GC + L L
Sbjct: 181 FFPASASAPRSTPIELSLARTGANADTARALGQLAG--RLVALNVSGCAMNDDALHFLGG 238
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS- 285
L +L L+L RC++SD G + + L+ LNLG+ +T++ ++ L LT L +NLDS
Sbjct: 239 LINLRSLSLERCRVSDVGVRQLCGLRDLRELNLGYTRVTNDGVLALAPLTELRVVNLDSL 298
Query: 286 ------------------------CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
G+GD G+ L L +NL +T ++D L L
Sbjct: 299 GDVGDAGMEVARRWEKLESLCVSDTGVGDGGVRKLKSCARLRDLNLGYTNVTDDGLEHLE 358
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK---NLRSLE 378
++SL++LNLD+R ITD G+ L +L LT +DLFGA+I+D GA+ L FK L LE
Sbjct: 359 DMTSLRNLNLDSRLITDDGVRHLANLGALTAIDLFGAKISDEGASRL--FKCTPKLERLE 416
Query: 379 ICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
+CGG LT+ GVK I + + LN+ +N +TD ++ + + L SLN++ S+ITS G
Sbjct: 417 LCGGSLTNVGVKRIAEHCKGMKTLNIGRNAKITDDCVDDVVTMRELTSLNLAFSKITSDG 476
Query: 438 LRHLKPLKNLRSLTLESCK-VTANDIKRLQSRDLPNL 473
+R L L L SL ++ C+ V+ ++RL+ R+ P L
Sbjct: 477 VRKLAALPCLTSLAIKGCESVSLAAVERLK-REAPAL 512
>gi|302853080|ref|XP_002958057.1| hypothetical protein VOLCADRAFT_99233 [Volvox carteri f.
nagariensis]
gi|300256635|gb|EFJ40897.1| hypothetical protein VOLCADRAFT_99233 [Volvox carteri f.
nagariensis]
Length = 581
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 180/530 (33%), Positives = 271/530 (51%), Gaps = 66/530 (12%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCL-GQYPGVNDKWMDVIASQGSSLL 60
LP D+ Q++F+EL+ + + L FR+ L + L G+ ND+ + + S L
Sbjct: 41 LPADLVQRVFDELLAAGRFSLSDLTRFRELDLDTVVLVGRADVRNDRLRSL--EKCSRLR 98
Query: 61 SVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
S+DL+G V+D G+ L+ LQ L + C+ ++D L H+RGL+ L L R I
Sbjct: 99 SLDLTGCVQVSDVGVASLRRHGGLQRLRLSHCVTLTDAALNHVRGLTGLQELELRECELI 158
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T +G+ +GL L LDL++C RI GGL +L L L +L + WC + DS++ L L
Sbjct: 159 TGEGLMQLSGLTQLKTLDLDQCRRIKGGLQHLTSLRHLATLRLGWCPLLGDSEVTWLREL 218
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC 238
L+ L+++ ++VTD G+++L L LT L+L GC +T A L L +L L+L
Sbjct: 219 GQLRELRLAYTQVTDVGVSHLAALTALTHLDLGGCTRLTDAAAAPLQRLTALQVLSLY-- 276
Query: 239 QLSDDGCEKFSKIGSLKVLNLG----------FNEITDECLVH----------------- 271
GC +F G ++ + + +T L
Sbjct: 277 -----GCGQFGNAGLAMLIAVPLLSLNSLTLSYTAVTTPGLTALSSLSRLTLLSLDSCAV 331
Query: 272 -------LKGLTNLESLNLDSCGIGDEGLVNLT---GLTNLESINLSFTG---------- 311
L+ L L +L+L +GD GL LT T+L + L++T
Sbjct: 332 GDAVCRVLRRLPRLANLDLSETSVGDGGLDALTVSGPPTSLTHLKLTYTKVNELGMPGKC 391
Query: 312 --ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA---- 365
I+D L KL+ L L+ L+LD+ +TD L +T L+ LT LDLF RITD+GA
Sbjct: 392 VFITDEGLSKLSLLVGLQQLDLDSGTLTDACLRHVTGLSALTGLDLFSCRITDAGARLLG 451
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLV 424
NLRSLE CGG LTDAG H+ L+SLT LNLSQN L D + L + L+ L
Sbjct: 452 GSGHLGGNLRSLECCGGLLTDAGAVHLARLTSLTCLNLSQNARLGDAGAQSLAASLSDLQ 511
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
L+++++ ITSA LR + L LR L++ + +VT + +L+SR P+L+
Sbjct: 512 ELSLNHTNITSACLRDVAALPWLRYLSVSNTRVTDAAVAKLRSRAHPDLI 561
>gi|452822896|gb|EME29911.1| leucine-rich repeat family protein [Galdieria sulphuraria]
Length = 588
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 162/494 (32%), Positives = 259/494 (52%), Gaps = 28/494 (5%)
Query: 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
PR++ Q++ LV SR L LE + + L V + W+ + + S+L +
Sbjct: 80 PRELIQRLVEYLVESRRLNCEFLETLQQHCVYRLRFTSQLQVTNDWLFYLQNL-STLSRL 138
Query: 63 DLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+L ++D GL +L + +L LD C+QI+ GL+HL GL L L + IT+
Sbjct: 139 ELKDCKFISDEGLSNLAEIVSLTYLDLAGCVQITSEGLQHLAGLKYLKVLVLKSCKQITS 198
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G+ A L NL +LD+E+C+ + L +L L KLE N WC ++D + LS
Sbjct: 199 EGLSYLANLHNLTRLDIEQCSEVSDSFLQSLNRLTKLEDFNCAWCFRLSDEGLTILSNFH 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
++ L IS ++V+ + +L G+ +L +L + G + L L SL L++ C +
Sbjct: 259 RMRYLNISKTRVSQNFGRFLPGMPRLRVLKVAGTGFSDRDAQYLRGLYSLRELDVEGCSV 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGD--------- 290
D + ++ LNLG+ +I++ + ++L + L+ LNLDSC IGD
Sbjct: 319 GDPFLATIYALPRIRKLNLGYTKISERGVSLYLGNMLKLQYLNLDSCLIGDFAVEHLSRL 378
Query: 291 ---------------EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
GL L LT+LE++ L++T +S+ L L L+ L+SL+LD R
Sbjct: 379 EQLKCLDLTDTTVSSSGLSGLANLTSLETLILAYTSVSNSGLEHLKNLTKLESLSLDTRG 438
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I+D GLA L L L HLDLFGA++TD+G ++ L SLE+C GG+TDAG++ I L
Sbjct: 439 ISDDGLAYLKKLKHLKHLDLFGAKVTDNGLRHISEISTLESLEVCAGGVTDAGLESIGKL 498
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+L LNLSQN +TD L +S L+ L SLN+S + + ++ +LR + +E C
Sbjct: 499 RALRTLNLSQNHRITDAGLIHLSCLSHLTSLNLSYTNVGDGICSLVQKCPSLRMIGIERC 558
Query: 456 KVTANDIKRLQSRD 469
++ RL++
Sbjct: 559 GLSIAAKIRLRTHQ 572
>gi|219122964|ref|XP_002181805.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407081|gb|EEC47019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 486
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 160/492 (32%), Positives = 250/492 (50%), Gaps = 44/492 (8%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP+D+ I L+ L +L R+C L L L GV D+W++ ++++ S
Sbjct: 1 LPQDVVDDILQSLIRHSALNATTLRILRNCELGVLSLSGCRGVTDEWLEALSAESSD--- 57
Query: 62 VDLSGSDVTDSGLIHLKDCS----NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S + + + H S N LD +++D GL L L L +
Sbjct: 58 ---SPPHLRTALMWHPCAASSALTNTTLLDLRGSQRLTDRGLMQLHDLGRLEVAKLDNCH 114
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ +G+ + L L L C R+ +VN+ L L++L++ C CITD + L
Sbjct: 115 SVVGRGLVVLSSSPRLHTLSLTNCRRLTDEAIVNISHLQSLQALSLDGCRCITDFSLAAL 174
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSAL----GSL 230
+ + NL+ L +S C +T+ G+ L+ LQ+L ++L C V+ A + +L+A +L
Sbjct: 175 ADMYNLRKLGLSQCDLITNEGLKALEHLQRLQEISLGWCRQVSDAGIQTLTAQPGRSSNL 234
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L L RC ++D+G + KI ++K L L ++ + D L L L LE LNLDSC IGD
Sbjct: 235 QILRLARCPITDEGVQYLGKIRNVKTLELCYSAVKDIHLTKLVNLPMLEELNLDSCPIGD 294
Query: 291 E---------------------------GLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
G+V + T L+ ++L + IS+ LR L+ L
Sbjct: 295 LAIQHFANHNVLPNLVSLDLADSDISDLGMVQIAKFTKLKRLSLFYCSISNRGLRHLSIL 354
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
+ L+ LNLD+R I+D GL L L L LD+F R+TD G YL K L SLE+CGGG
Sbjct: 355 TELRVLNLDSRDISDDGLRHLQHLKQLKSLDIFSGRVTDLGCTYLSKIKTLESLELCGGG 414
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
+ DAG + L +LT LNLSQN +T++ ++ L+ L +LN+S++R+ ++ LR+
Sbjct: 415 VRDAGCASLAKLENLTSLNLSQNERITNRGAAALAALSKLKALNLSHTRVNASALRYFSG 474
Query: 444 LKNLRSLTLESC 455
L NL+SL L C
Sbjct: 475 LMNLQSLALYGC 486
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 189/394 (47%), Gaps = 40/394 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L++C L L + C ++D LE L S+ + R A+ A + L N L
Sbjct: 27 LRNC-ELGVLSLSGCRGVTDEWLEALSAESSDSPPHLR--TALMWHPCAASSALTNTTLL 83
Query: 137 DLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
DL R+ GL+ L L +LE + C+ + + LS L +L ++ C ++TD
Sbjct: 84 DLRGSQRLTDRGLMQLHDLGRLEVAKLDNCHSVVGRGLVVLSSSPRLHTLSLTNCRRLTD 143
Query: 195 SGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIG 252
I + LQ L L+L+GC +T L +L+ + +L L L++C L +++G + +
Sbjct: 144 EAIVNISHLQSLQALSLDGCRCITDFSLAALADMYNLRKLGLSQCDLITNEGLKALEHLQ 203
Query: 253 SLKVLNLGF-NEITDECLVHLKGL----TNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
L+ ++LG+ +++D + L +NL+ L L C I DEG+ L + N++++ L
Sbjct: 204 RLQEISLGWCRQVSDAGIQTLTAQPGRSSNLQILRLARCPITDEGVQYLGKIRNVKTLEL 263
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS---LTGLTHLDLFGARITDSG 364
++ + D L KL L L+ LNLD+ I D + + L L LDL + I+D G
Sbjct: 264 CYSAVKDIHLTKLVNLPMLEELNLDSCPIGDLAIQHFANHNVLPNLVSLDLADSDISDLG 323
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
+ F L+ L + +++ G++H+ S LT L
Sbjct: 324 MVQIAKFTKLKRLSLFYCSISNRGLRHL-------------------------SILTELR 358
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
LN+ + I+ GLRHL+ LK L+SL + S +VT
Sbjct: 359 VLNLDSRDISDDGLRHLQHLKQLKSLDIFSGRVT 392
>gi|46446659|ref|YP_008024.1| hypothetical protein pc1025 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400300|emb|CAF23749.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 695
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 161/397 (40%), Positives = 224/397 (56%), Gaps = 10/397 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL HL L+ L L+ + +T G+ A
Sbjct: 238 LTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSASYNLTDAGLVHLA 297
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L KL+L R ++ GL +LK L L+ L++ +C +TD + L LT L+ L +
Sbjct: 298 PLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQRLDL 357
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
C K+TD G+ +L+ L L LNL C T A L LS L L +LNL C L+D G
Sbjct: 358 RYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLNLYECINLTDAGL 417
Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLE 303
+ L+ LNL + +E+TD LVHLK LT L+ LNL +C + D GLV+L LT L+
Sbjct: 418 VHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLVHLKFLTGLQ 477
Query: 304 SINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARI 360
+NLS+ ++D L L L+ L+ LNL + +TD GLA LT LTGL HLDL + +++
Sbjct: 478 HLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCSKL 537
Query: 361 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
TD G A+L+ L+ L + LTDAG+ H+K L+ L LNLS NLTD L +
Sbjct: 538 TDDGLAHLKPLTALQCLNLSNCRNLTDAGLVHLKLLTGLQHLNLSDYKNLTDDGLIHLMP 597
Query: 420 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L L L + +T AGL HL PL L+ L L C
Sbjct: 598 LMALRHLELLGCENLTDAGLVHLTPLTALQHLNLSHC 634
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 165/444 (37%), Positives = 245/444 (55%), Gaps = 17/444 (3%)
Query: 17 SRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGL 74
+R LT+ L ++C L+ L L + + D + + ++L ++LS S ++TD+GL
Sbjct: 235 NRYLTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPL-TALQYLNLSASYNLTDAGL 293
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
+HL + LQ L+ Q++D GL HL+ L+ L L +T G+ L L
Sbjct: 294 VHLAPLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQ 353
Query: 135 KLDLERCTRI-HGGLVNLKGLMKLESLNIK--WCNCITDSDMKPLSGLTNLKSLQISCSK 191
+LDL C ++ GLV+L+ L L+ LN+ W S + PL+GL +L + C
Sbjct: 354 RLDLRYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLNLYE--CIN 411
Query: 192 VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 249
+TD+G+ +LK L L LNL C +T A L L L L +LNL+ C L+D G
Sbjct: 412 LTDAGLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLVHLK 471
Query: 250 KIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINL 307
+ L+ LNL + +E+TD LVHLK LT L+ LNL +C + D GL +LT LT L+ ++L
Sbjct: 472 FLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDL 531
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSG 364
S+ + ++D L L L++L+ LNL + R +TD GL L LTGL HL+L + +TD G
Sbjct: 532 SYCSKLTDDGLAHLKPLTALQCLNLSNCRNLTDAGLVHLKLLTGLQHLNLSDYKNLTDDG 591
Query: 365 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
+L LR LE+ G LTDAG+ H+ L++L LNLS +LTD L ++ LTGL
Sbjct: 592 LIHLMPLMALRHLELLGCENLTDAGLVHLTPLTALQHLNLSHCDDLTDAGLAHLTSLTGL 651
Query: 424 VSLNVSN-SRITSAGLRHLKPLKN 446
L + +T AGL K + N
Sbjct: 652 QHLELLGCENLTDAGLARFKTVAN 675
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 126/315 (40%), Positives = 175/315 (55%), Gaps = 9/315 (2%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E LN +TD+ + L NLK L + C +TD G+A+L L L LNL
Sbjct: 226 KIEGLNFSNNRYLTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSAS 285
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
+T A L L+ L +L LNL R QL+D G + +L+ L+L F E +TD+ L H
Sbjct: 286 YNLTDAGLVHLAPLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAH 345
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L+ LT L+ L+L C + D+GLV+L LT L+ +NLS + L L+ L+ L+ LN
Sbjct: 346 LRPLTALQRLDLRYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLN 405
Query: 331 L-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDA 387
L + +TD GL L LTGL HL+L + +TD+G +L+ L+ L + LTDA
Sbjct: 406 LYECINLTDAGLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDA 465
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKN 446
G+ H+K L+ L LNLS LTD L + LTGL LN+SN + +T AGL HL PL
Sbjct: 466 GLVHLKFLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTG 525
Query: 447 LRSLTLESCKVTAND 461
L+ L L C +D
Sbjct: 526 LQHLDLSYCSKLTDD 540
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 125/320 (39%), Positives = 184/320 (57%), Gaps = 9/320 (2%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQ 204
L+ LK L+ L+++ C +TD + L+ LT L+ L +S S +TD+G+ +L L
Sbjct: 241 AHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSASYNLTDAGLVHLAPLT 300
Query: 205 KLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 262
L LNL +T A L L L +L L+L+ C+ L+DDG + +L+ L+L +
Sbjct: 301 ALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQRLDLRYC 360
Query: 263 E-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL-SFTGISDGSLRKL 320
E +TD+ LVHL+ LT L+ LNL +C GL +L+ LT L+ +NL ++D L L
Sbjct: 361 EKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLNLYECINLTDAGLVHL 420
Query: 321 AGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLE 378
L+ L+ LNL ++TD GL L LTGL HL+L +TD+G +L+ L+ L
Sbjct: 421 KLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLVHLKFLTGLQHLN 480
Query: 379 ICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSA 436
+ LTDAG+ H+K L+ L LNLS NLTD L ++ LTGL L++S S++T
Sbjct: 481 LSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCSKLTDD 540
Query: 437 GLRHLKPLKNLRSLTLESCK 456
GL HLKPL L+ L L +C+
Sbjct: 541 GLAHLKPLTALQCLNLSNCR 560
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 33 LQDLCLGQYPGVND----KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
LQ L L Y + D M ++A + LL + ++TD+GL+HL + LQ L+
Sbjct: 576 LQHLNLSDYKNLTDDGLIHLMPLMALRHLELLGCE----NLTDAGLVHLTPLTALQHLNL 631
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ C ++D GL HL L+ L L +T G+ F + N + L ++R
Sbjct: 632 SHCDDLTDAGLAHLTSLTGLQHLELLGCENLTDAGLARFKTVANSLYLIIKR 683
>gi|307107435|gb|EFN55678.1| hypothetical protein CHLNCDRAFT_133919 [Chlorella variabilis]
Length = 553
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 172/476 (36%), Positives = 247/476 (51%), Gaps = 71/476 (14%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPG-VNDKWMDVIASQGSSLLSVDLSGSDVT--DSGLIH 76
L+ + L FR L LG YP V W+ +++ SL + DLS ++ + D L
Sbjct: 65 LSGLGLHFFR------LPLGAYPERVQPSWLRCLST--PSLEAADLSKTEASGMDEVLAS 116
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L +L L ++C+ ++DGGL L+G+++L LS +TA GM GL L +L
Sbjct: 117 LGPTPHLAQLCLDYCVDLTDGGLALLQGMTSLEELSLAGCELLTAVGMGHLRGLTRLRRL 176
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
L+ C +I L L L +LE L++ WC+ + DSD ++VTD G
Sbjct: 177 SLQTCHQI--SLAPLAQLRQLEQLDVGWCSSLDDSD-----------------AQVTDHG 217
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC-QLSDDGCEKFSKIG-S 253
+A L L +L LNL G V+ L +L L L LNL RC Q D S+
Sbjct: 218 LACLHSLGQLRALNLAGVRVSDEALAALLRHLPHLRALNLERCLQAGDASLAAVSQRALQ 277
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN------------ 301
L+ L+LG+ ++D L+ L GLT L L+L++C +GD GL L+ LT
Sbjct: 278 LRELHLGYTAVSDRGLLLLGGLTQLHVLSLENCSVGDGGLAVLSHLTQMRQLDLSDTSAS 337
Query: 302 ------------LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
LE +NLSFTG++D L++L LSSL+ LNLD+R TD G+ ++ L G
Sbjct: 338 NETMSTVAAMRQLECLNLSFTGVNDLGLKRLRRLSSLRCLNLDSRHFTDAGMVSVAQLAG 397
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
L LDLFGARI D+G A L KNLR LE+CGGG+TDAGV H+ L+ L L+L+Q
Sbjct: 398 LECLDLFGARIGDAGCASLSKLKNLRRLEVCGGGVTDAGVAHLVALTRLQHLSLAQ---- 453
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-ESCKVTANDIKR 464
S G S + N R++++ + HL L L +L L ++C T ++ R
Sbjct: 454 -------ASACWG--SCTLPNYRVSNSCILHLIKLNELMALNLSQACACTTQNLHR 500
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 166/330 (50%), Gaps = 15/330 (4%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKL 206
L +L L L + +C +TD + L G+T+L+ L ++ C +T G+ +L+GL +L
Sbjct: 114 LASLGPTPHLAQLCLDYCVDLTDGGLALLQGMTSLEELSLAGCELLTAVGMGHLRGLTRL 173
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRC--------QLSDDGCEKFSKIGSLKVLN 258
L+L+ C + L L+ L L L++ C Q++D G +G L+ LN
Sbjct: 174 RRLSLQTCHQIS--LAPLAQLRQLEQLDVGWCSSLDDSDAQVTDHGLACLHSLGQLRALN 231
Query: 259 LGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLT-NLESINLSFTGISDG 315
L ++DE L L + L +L +LNL+ C GD L ++ L ++L +T +SD
Sbjct: 232 LAGVRVSDEALAALLRHLPHLRALNLERCLQAGDASLAAVSQRALQLRELHLGYTAVSDR 291
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L L GL+ L L+L+ + D GLA L+ LT + LDL ++ + + + L
Sbjct: 292 GLLLLGGLTQLHVLSLENCSVGDGGLAVLSHLTQMRQLDLSDTSASNETMSTVAAMRQLE 351
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G+ D G+K ++ LSSL LNL + TD + ++ L GL L++ +RI
Sbjct: 352 CLNLSFTGVNDLGLKRLRRLSSLRCLNLDSR-HFTDAGMVSVAQLAGLECLDLFGARIGD 410
Query: 436 AGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
AG L LKNLR L + VT + L
Sbjct: 411 AGCASLSKLKNLRRLEVCGGGVTDAGVAHL 440
>gi|46446666|ref|YP_008031.1| hypothetical protein pc1032 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400307|emb|CAF23756.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 734
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 165/451 (36%), Positives = 250/451 (55%), Gaps = 13/451 (2%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL 77
LT+ L ++C L+ L + GV D + + + ++L +DLS + +TD GL HL
Sbjct: 237 LTDAHLLTLKNCKNLKILHFKKCWGVTDAGLAHL-TPLTTLQYLDLSDCEKLTDDGLAHL 295
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ LQ LD ++C ++D GL HL L+ L L+ R + G+ L L L+
Sbjct: 296 TPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGLAHLTPLTGLQHLN 355
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L RC + GL +LK L L+ LN+ C +TD+ + L+ LT L+ L +S C+ +TD+
Sbjct: 356 LNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNSLTDA 415
Query: 196 GIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGS 253
G+A+L L L L+L C T A L L++L L YLNL+ + L+D G + + +
Sbjct: 416 GLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPLTA 475
Query: 254 LKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-T 310
L+ LNL + TD L HL LT L+ L+L C + D+GL +L LT L+ + LS+
Sbjct: 476 LQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSWCD 535
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 369
++D L L L++L+ L+L +ITD GLA LT LTGL HL L + ++TD+G A+L
Sbjct: 536 KLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAHLT 595
Query: 370 NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
L+ L + LTDAG+ H+ L++L L L+ LTD L ++ LT L L +
Sbjct: 596 PLTTLQYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTL 655
Query: 429 SN-SRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ ++T GL HLKPL L+ L L C++T
Sbjct: 656 NRCEKLTDDGLAHLKPLAALQYLDLSYCEIT 686
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 203/374 (54%), Gaps = 9/374 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D+TD+GL HLK + LQ L+ + C +++D GL HL L+ L L R N++T G+
Sbjct: 361 DLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNSLTDAGLAHL 420
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L LDL C GL +L L L+ LN+ +TD+ + L+ LT L+ L
Sbjct: 421 TPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPLTALQHLN 480
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+ +C K TD+G+A+L L L L+L C +T L L+ L L L L+ C +L+D
Sbjct: 481 LCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSWCDKLTDA 540
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNL 302
G + + +L+ L+L EITD L HL LT L+ L L C + D GL +LT LT L
Sbjct: 541 GLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAHLTPLTTL 600
Query: 303 ESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-AR 359
+ + L S ++D L LA L++L+ L L D R++TDTGLA LT LT L HL L +
Sbjct: 601 QYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTLNRCEK 660
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
+TD G A+L+ L+ L++ +TDAG+ H+ L +L L+L +TD LE
Sbjct: 661 LTDDGLAHLKPLAALQYLDLSYCEITDAGLAHLTHLMALQRLDLYGR-EITDDGLERFET 719
Query: 420 LTGLVSLNVSNSRI 433
L +L + R
Sbjct: 720 LAASFNLEIRLDRF 733
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 182/338 (53%), Gaps = 35/338 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E+LN +TD+ + L NLK L C VTD+G+A+L L L L+L C
Sbjct: 225 KIETLNFSENARLTDAHLLTLKNCKNLKILHFKKCWGVTDAGLAHLTPLTTLQYLDLSDC 284
Query: 215 ------------PVTA--------------ACLDSLSALGSLFYLNLNRCQ-LSDDGCEK 247
P+T A L L+ L +L +LNLNRC+ L D G
Sbjct: 285 EKLTDDGLAHLTPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGLAH 344
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESI 305
+ + L+ LNL ++TD L HLK LT L+ LNL C + D GL +LT LT L+ +
Sbjct: 345 LTPLTGLQHLNLNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHL 404
Query: 306 NLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITD 362
+LS ++D L L L++L+ L+L D + TD GLA LTSLTGL +L+L + +TD
Sbjct: 405 DLSRCNSLTDAGLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTD 464
Query: 363 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
+G A+L L+ L +C TD G+ H+ L++L L+LS NLTD L ++ LT
Sbjct: 465 AGLAHLTPLTALQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLT 524
Query: 422 GLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 458
GL L +S ++T AGL HL PL L+ L L C++T
Sbjct: 525 GLQRLVLSWCDKLTDAGLAHLTPLTALQYLDLSCCEIT 562
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 105/214 (49%), Gaps = 32/214 (14%)
Query: 48 WMDVIASQG-------SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
W D + G ++L +DLS ++TD+GL HL + LQ L +C Q++D GL
Sbjct: 533 WCDKLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLA 592
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
HL L+ L L N +T GL +L L L+ L
Sbjct: 593 HLTPLTTLQYLYLGSCNRLTD------------------------AGLAHLAPLTALQHL 628
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+ C +TD+ + L+ LT L+ L ++ C K+TD G+A+LK L L L+L C +T A
Sbjct: 629 ALNDCRKLTDTGLAHLTPLTALQHLTLNRCEKLTDDGLAHLKPLAALQYLDLSYCEITDA 688
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
L L+ L +L L+L +++DDG E+F + +
Sbjct: 689 GLAHLTHLMALQRLDLYGREITDDGLERFETLAA 722
>gi|428173313|gb|EKX42216.1| hypothetical protein GUITHDRAFT_74106 [Guillardia theta CCMP2712]
Length = 527
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 168/481 (34%), Positives = 260/481 (54%), Gaps = 33/481 (6%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAF-RDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+P ++ Q +F+ L YSR L + L R C D L YP + D W++V+ +L
Sbjct: 42 IPNEMVQALFDSLAYSRRLEKSHLPLLSRIC---DASLFAYPLIADDWLEVLGESFHALT 98
Query: 61 SVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+D+S VTD G+ L+ +L+S+ C+++ D LE + LS+L+ LS +
Sbjct: 99 RLDMSNCIHVTDEGISRLRSLQSLRSIKLENCLRLGDATLEVIGELSSLSHLSVSACTRM 158
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ G+ + L+ + L+LER TR+ G+ +L+ L L LN+ W N DS + L
Sbjct: 159 ASSGVSCLSQLVRMTDLNLERLTRLDSEGIESLEKLTNLRILNLGWTNADDDS-FESLRS 217
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNR 237
L LK L + T+ G+ L L +L L + C V A + L LS+LG L L+L++
Sbjct: 218 LPRLKRLNVCACPFTEDGLQALCSLTQLESLRMCSCKVGATSALVELSSLGKLKLLDLSQ 277
Query: 238 CQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
C+ + D E + LK+L L +TD L +L L +L++LNLD C + + GL +
Sbjct: 278 CEHVGDQTLEALRGLSDLKILLLAHTRVTDIGLGYLSSLWDLKTLNLDCCHVTNGGLQTI 337
Query: 297 TGLTNLE------------------------SINLSFTGISDGSLRKLAGLSSLKSLNLD 332
LTNLE S+NL TG+SD + + GL++L LNLD
Sbjct: 338 ANLTNLENLDLSDNVVTSSGLALLTGLTTLKSLNLFSTGVSDAGVIHVTGLTNLVRLNLD 397
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+R ITD+GLA ++ LT L LDLFGA++T G Y+ +L SLE+CGGGLTD ++ +
Sbjct: 398 SRLITDSGLACISGLTNLQELDLFGAKVTHHGTIYIGLLTSLTSLELCGGGLTDEAMREL 457
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
K L+ + LN+SQN +L++ + +S ++ L SLN++ + +S G RHL +L SL L
Sbjct: 458 KRLTRMRNLNVSQNESLSNGSFIPMSRMSLLTSLNIAGTNFSSDGARHLTIFTDLTSLCL 517
Query: 453 E 453
Sbjct: 518 R 518
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 170/330 (51%), Gaps = 28/330 (8%)
Query: 133 LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCS 190
L +LD+ C + G+ L+ L L S+ ++ C + D+ ++ + + +C+
Sbjct: 97 LTRLDMSNCIHVTDEGISRLRSLQSLRSIKLENCLRLGDATLEVIGELSSLSHLSVSACT 156
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++ SG++ L L ++T LNLE L R L +G E K
Sbjct: 157 RMASSGVSCLSQLVRMTDLNLE---------------------RLTR--LDSEGIESLEK 193
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ +L++LNLG+ D+ L+ L L+ LN+ +C ++GL L LT LES+ +
Sbjct: 194 LTNLRILNLGWTNADDDSFESLRSLPRLKRLNVCACPFTEDGLQALCSLTQLESLRMCSC 253
Query: 311 GI-SDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
+ + +L +L+ L LK L+L + D L AL L+ L L L R+TD G YL
Sbjct: 254 KVGATSALVELSSLGKLKLLDLSQCEHVGDQTLEALRGLSDLKILLLAHTRVTDIGLGYL 313
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+ +L++L + +T+ G++ I +L++L L+LS N +T L L++GLT L SLN+
Sbjct: 314 SSLWDLKTLNLDCCHVTNGGLQTIANLTNLENLDLSDNV-VTSSGLALLTGLTTLKSLNL 372
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
++ ++ AG+ H+ L NL L L+S +T
Sbjct: 373 FSTGVSDAGVIHVTGLTNLVRLNLDSRLIT 402
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 28/231 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ + VTD GL +L +L++L+ + C +++GGL+ + L+NL +L +N +T+ G
Sbjct: 300 LAHTRVTDIGLGYLSSLWDLKTLNLD-CCHVTNGGLQTIANLTNLENLDLS-DNVVTSSG 357
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ GL L L+L G++++ GL L LN+ ITDS + +SGLTNL+
Sbjct: 358 LALLTGLTTLKSLNLFSTGVSDAGVIHVTGLTNLVRLNLD-SRLITDSGLACISGLTNLQ 416
Query: 184 SLQISCSKVTDSGIAY------------------------LKGLQKLTLLNL-EGCPVTA 218
L + +KVT G Y LK L ++ LN+ + ++
Sbjct: 417 ELDLFGAKVTHHGTIYIGLLTSLTSLELCGGGLTDEAMRELKRLTRMRNLNVSQNESLSN 476
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+S + L LN+ S DG + L L L F+ ++ CL
Sbjct: 477 GSFIPMSRMSLLTSLNIAGTNFSSDGARHLTIFTDLTSLCLRFDCLSRTCL 527
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 26/189 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++DLS + VT SGL L + L+SL+ F +SD G+ H+ GL+NL L+ +
Sbjct: 341 TNLENLDLSDNVVTSSGLALLTGLTTLKSLNL-FSTGVSDAGVIHVTGLTNLVRLNLD-S 398
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLV------------------------NLK 152
IT G+ +GL NL +LDL H G + LK
Sbjct: 399 RLITDSGLACISGLTNLQELDLFGAKVTHHGTIYIGLLTSLTSLELCGGGLTDEAMRELK 458
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L ++ +LN+ +++ P+S ++ L SL I+ + + G +L LT L L
Sbjct: 459 RLTRMRNLNVSQNESLSNGSFIPMSRMSLLTSLNIAGTNFSSDGARHLTIFTDLTSLCLR 518
Query: 213 GCPVTAACL 221
++ CL
Sbjct: 519 FDCLSRTCL 527
>gi|46446831|ref|YP_008196.1| hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400472|emb|CAF23921.1| hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 666
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 218/396 (55%), Gaps = 9/396 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL LQ LD + C +++D GL HL L+ L L +T G+
Sbjct: 247 ITDAGLAHLTTLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLT 306
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C + GL +L LM L+ L++ WC +TD+ + L+ LT L+ L +
Sbjct: 307 LLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDL 366
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S C +TD+G+A+L L L LNL C +T A L L+ L +L +LNL+R L+ G
Sbjct: 367 SNCKNLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGL 426
Query: 246 EKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLE 303
+ + L+ L+L G ++ D L HL+ L L+ LNL C + D GL +L+ L L+
Sbjct: 427 AHLTSLTGLQHLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLSPLKALQ 486
Query: 304 SINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARI 360
++ LS+ ++ L L L +L+ L+L + +TD GLA L L L HL+L G ++
Sbjct: 487 TLGLSWCQNLTGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVALQHLNLTGCWKL 546
Query: 361 TDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
TD+G A+L + L+ L + LTDAG+ H+K L +L L+LS NLTD+ L +
Sbjct: 547 TDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNCNNLTDEGLTHLRP 606
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L L LN+S +T GL HL PL L+ L L SC
Sbjct: 607 LVALQHLNLSRYNLTDDGLAHLTPLTTLQYLDLSSC 642
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 226/397 (56%), Gaps = 10/397 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L F C I+D GL HL L++L L+ + IT G+
Sbjct: 197 LTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLWCITDAGLAHLT 256
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL +C+++ GL +L L L+ L + +C +TD+ + L+ LT L+ L +
Sbjct: 257 TLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGLQHLDL 316
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S C +TD+G+A+L L L L+L C +T A L L++L L +L+L+ C+ L+D G
Sbjct: 317 SNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKNLTDAG 376
Query: 245 CEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
+ + +L+ LNL + ++TD L HL LT L+ LNL + GL +LT LT L+
Sbjct: 377 LAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTSLTGLQ 436
Query: 304 SINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARI 360
++LS + + D L L L +L+ LNL ++TD GLA L+ L L L L + +
Sbjct: 437 HLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLSPLKALQTLGLSWCQNL 496
Query: 361 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
T +G A+L+ L+ L++ LTDAG+ H++ L +L LNL+ LTD L ++
Sbjct: 497 TGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLTS 556
Query: 420 LTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLTLESC 455
L L LN+S ++T AGL HLKPL L+ L L +C
Sbjct: 557 LMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNC 593
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/369 (35%), Positives = 192/369 (52%), Gaps = 8/369 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ LD + C ++D GL HL L L L +T G+
Sbjct: 296 NLTDAGLAHLTLLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHL 355
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L LDL C + GL +L LM L+ LN+ WC +TD+ + L+ LT L+ L
Sbjct: 356 TSLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLN 415
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
+S +T +G+A+L L L L+L G + A L L L +L +LNL C +L+D G
Sbjct: 416 LSRYNLTYAGLAHLTSLTGLQHLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDAG 475
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNL 302
S + +L+ L L + +T L HLK L L+ L+L +C + D GL +L L L
Sbjct: 476 LAHLSPLKALQTLGLSWCQNLTGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVAL 535
Query: 303 ESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR- 359
+ +NL+ ++D L L L +L+ LNL ++TD GLA L L L HLDL
Sbjct: 536 QHLNLTGCWKLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNCNN 595
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
+TD G +LR L+ L + LTD G+ H+ L++L L+LS NLTD L
Sbjct: 596 LTDEGLTHLRPLVALQHLNLSRYNLTDDGLAHLTPLTTLQYLDLSSCYNLTDAGLAHFKT 655
Query: 420 LTGLVSLNV 428
+ ++L +
Sbjct: 656 VAASLNLKI 664
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 192/351 (54%), Gaps = 11/351 (3%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DLS ++TD+GL HL LQ LD ++C++++D GL HL L+ L L
Sbjct: 309 TGLQHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSN 368
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ L+ L L+L C ++ GL +L L L+ LN+ N +T + +
Sbjct: 369 CKNLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYN-LTYAGLA 427
Query: 175 PLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFY 232
L+ LT L+ L +S S K+ D+G+A+L+ L L LNL GC +T A L LS L +L
Sbjct: 428 HLTSLTGLQHLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLSPLKALQT 487
Query: 233 LNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IG 289
L L+ CQ L+ G + +L+ L+L N +TD L HL+ L L+ LNL C +
Sbjct: 488 LGLSWCQNLTGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVALQHLNLTGCWKLT 547
Query: 290 DEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL 347
D GL +LT L L+ +NLS+ ++D L L L +L+ L+L + +TD GL L L
Sbjct: 548 DAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNCNNLTDEGLTHLRPL 607
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 397
L HL+L +TD G A+L L+ L++ LTDAG+ H K +++
Sbjct: 608 VALQHLNLSRYNLTDDGLAHLTPLTTLQYLDLSSCYNLTDAGLAHFKTVAA 658
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 113/299 (37%), Positives = 174/299 (58%), Gaps = 11/299 (3%)
Query: 168 ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE--GCPVTAACLDSL 224
+TD+ + L NLK L +C +TD+G+A+L L L LNL C +T A L L
Sbjct: 197 LTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLWC-ITDAGLAHL 255
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLN 282
+ L +L +L+L++C +L+DDG + + +L+ L L + E +TD L HL LT L+ L+
Sbjct: 256 TTLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGLQHLD 315
Query: 283 LDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDT 339
L +C + D GL +LT L L+ ++LS+ ++D L L L+ L+ L+L + + +TD
Sbjct: 316 LSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKNLTDA 375
Query: 340 GLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
GLA LTSL L HL+L + ++TD+G A+L L+ L + LT AG+ H+ L+ L
Sbjct: 376 GLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTSLTGL 435
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
L+LS + L D L + L L LN++ ++T AGL HL PLK L++L L C+
Sbjct: 436 QHLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLSPLKALQTLGLSWCQ 494
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 130/240 (54%), Gaps = 7/240 (2%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEG 292
N L+D +LK+L+ ITD L HL LT+L+ LNL I D G
Sbjct: 192 FNNIYLTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLWCITDAG 251
Query: 293 LVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL 350
L +LT L L+ ++LS + ++D L L L++L+ L L+ +TD GLA LT LTGL
Sbjct: 252 LAHLTTLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGL 311
Query: 351 THLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCN 408
HLDL + +TD+G A+L + L+ L++ LTDAG+ H+ L+ L L+LS N
Sbjct: 312 QHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKN 371
Query: 409 LTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
LTD L ++ L L LN+S ++T AGL HL PL L+ L L +T + L S
Sbjct: 372 LTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTS 431
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++L+G +TD+GL HL LQ L+ ++C++++D GL HL+ L L L
Sbjct: 534 ALQHLNLTGCWKLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNC 593
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N +T +G+ L+ L L+L R GL +L L L+ L++ C +TD
Sbjct: 594 NNLTDEGLTHLRPLVALQHLNLSRYNLTDDGLAHLTPLTTLQYLDLSSCYNLTD------ 647
Query: 177 SGLTNLKSLQIS 188
+GL + K++ S
Sbjct: 648 AGLAHFKTVAAS 659
>gi|46447560|ref|YP_008925.1| hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401201|emb|CAF24650.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 761
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 153/399 (38%), Positives = 226/399 (56%), Gaps = 11/399 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T++ L+ LKDC NL++L C ++D GLEHL L+ L L+ R +T G+
Sbjct: 207 LTNAHLLALKDCKNLKALHLEACQALTDDGLEHLTLLTALQHLNLSRCKNLTDAGLAHLT 266
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C + GL L+ L L+ L+++ C+ ITD+ + L+ L L+ L +
Sbjct: 267 PLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITDAGLSHLTPLVALQYLSL 326
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C +TD+G+ +LK L L LNL C +T A L+ L+ L SL +LNL+ C +L+D G
Sbjct: 327 SQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAG 386
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNL 302
+ + +L+ L+L N++TD L HL LT L+ LNL C I + GL +L LT L
Sbjct: 387 LAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTAL 446
Query: 303 ESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGA-R 359
+ +NLS ++D L L L++L+ L+L ++TD G A LT LTGL +LDL +
Sbjct: 447 QYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNK 506
Query: 360 ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+TD+G A+L L+ L++ LTD G+ H+ L +L LNLS LTD +S
Sbjct: 507 LTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLTDAGFAHLS 566
Query: 419 GLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 456
LT L L++S + +T A L HL PL L+ L L C+
Sbjct: 567 PLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCE 605
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 172/491 (35%), Positives = 268/491 (54%), Gaps = 42/491 (8%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
+ I + F+ VY LT L A +DC L+ L L + D ++ + + ++L +
Sbjct: 194 KKIERLNFSNQVY---LTNAHLLALKDCKNLKALHLEACQALTDDGLEHL-TLLTALQHL 249
Query: 63 DLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+LS ++TD+GL HL + LQ LD + C + +D GL +L L+ L L R + IT
Sbjct: 250 NLSRCKNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITD 309
Query: 122 QGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G+ L+ L L L +C + GL++LK L L+ LN+ CN +TD+ ++ L+ LT
Sbjct: 310 AGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLT 369
Query: 181 NLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC------------PVTA--------- 218
+L+ L + SC K+TD+G+A+L L L L+L C P+TA
Sbjct: 370 SLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQC 429
Query: 219 -----ACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
A L+ L L +L YLNL++C+ L+D G E + + +L+ L+L + ++TD H
Sbjct: 430 DNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAH 489
Query: 272 LKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 329
L LT L+ L+L C + D GL +LT LT L+ ++LS ++D L L L +L+ L
Sbjct: 490 LTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHL 549
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTD 386
NL + ++TD G A L+ LT L LDL + +TD+ A+L L+ L++ LTD
Sbjct: 550 NLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTD 609
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLK 445
AG+ H+K L+ L LNL LTD L ++ L+GL L++S+ ++T AGL HLK L
Sbjct: 610 AGLVHLKLLTDLQYLNLRGCGYLTDAGLAHLTTLSGLQHLDLSSCEKLTDAGLVHLKLLT 669
Query: 446 NLRSLTLESCK 456
+L+ L L C+
Sbjct: 670 DLQYLNLSRCE 680
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 151/399 (37%), Positives = 230/399 (57%), Gaps = 11/399 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GLIHLK + LQ L+ + C +++D GLEHL L++L L+ +T G+
Sbjct: 331 NLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHL 390
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L LDL C ++ GL +L L L+ LN+ C+ IT++ ++ L LT L+ L
Sbjct: 391 TPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLN 450
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C K+TD+G+ +L L L L+L C +T A L+ L L YL+L+ C +L+D
Sbjct: 451 LSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDA 510
Query: 244 GCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTN 301
G + + +L+ L+L ++TD+ L HL L L+ LNL SC + D G +L+ LT
Sbjct: 511 GLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLTDAGFAHLSPLTA 570
Query: 302 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-A 358
L+ ++LS+ ++D L L L++L+ L+L +TD GL L LT L +L+L G
Sbjct: 571 LQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCG 630
Query: 359 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+TD+G A+L L+ L++ LTDAG+ H+K L+ L LNLS+ NLTD+ L L+
Sbjct: 631 YLTDAGLAHLTTLSGLQHLDLSSCEKLTDAGLVHLKLLTDLQYLNLSRCENLTDEGLALL 690
Query: 418 SGLTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLTLESC 455
+ LT L L + +T AGL HL PL L+ L L C
Sbjct: 691 TPLTALQHLKLRYCINLTDAGLAHLTPLTGLQRLDLSQC 729
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 153/415 (36%), Positives = 234/415 (56%), Gaps = 12/415 (2%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L + + D ++ +A +SL ++LS +TD+GL HL LQ LD +
Sbjct: 345 ALQYLNLSRCNKLTDAGLEHLALL-TSLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSI 403
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C +++D GL HL L+ L L+ + + IT G++ L L L+L +C ++ GL
Sbjct: 404 CNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLE 463
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+L L L+ L++ WC +TD+ L+ LT L+ L +S C+K+TD+G+A+L L L
Sbjct: 464 HLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQY 523
Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEIT 265
L+L C +T L L+ L +L +LNL+ C +L+D G S + +L+ L+L + +T
Sbjct: 524 LDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLT 583
Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTG-ISDGSLRKLAGL 323
D L HL LT L+ L+L C + D GLV+L LT+L+ +NL G ++D L L L
Sbjct: 584 DAELAHLTPLTALQRLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHLTTL 643
Query: 324 SSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI-C 380
S L+ L+L + ++TD GL L LT L +L+L +TD G A L L+ L++
Sbjct: 644 SGLQHLDLSSCEKLTDAGLVHLKLLTDLQYLNLSRCENLTDEGLALLTPLTALQHLKLRY 703
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
LTDAG+ H+ L+ L L+LSQ NLTD L + LT L LN+S++ I+
Sbjct: 704 CINLTDAGLAHLTPLTGLQRLDLSQCWNLTDAGLIHLKLLTALQHLNLSDTNISP 758
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 131/365 (35%), Positives = 196/365 (53%), Gaps = 33/365 (9%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 169
L+F +T + A NL L LE C + GL +L L L+ LN+ C +T
Sbjct: 199 LNFSNQVYLTNAHLLALKDCKNLKALHLEACQALTDDGLEHLTLLTALQHLNLSRCKNLT 258
Query: 170 DSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSAL 227
D+ + L+ LT L+ L +S C+K TD+G+AYL+ L L L+L GC +T A L L+ L
Sbjct: 259 DAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITDAGLSHLTPL 318
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L YL+L++C +TD L+HLK LT L+ LNL C
Sbjct: 319 VALQYLSLSQCW-----------------------NLTDAGLIHLKPLTALQYLNLSRCN 355
Query: 288 -IGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAAL 344
+ D GL +L LT+L+ +NLS ++D L L L +L+ L+L ++TD GL L
Sbjct: 356 KLTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHL 415
Query: 345 TSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLN 402
LT L +L+L IT++G +L L+ L + LTDAG++H+ L++L L+
Sbjct: 416 NPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLD 475
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTAN 460
LS LTD ++ LTGL L++S+ +++T AGL HL PL L+ L L +C K+T +
Sbjct: 476 LSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDD 535
Query: 461 DIKRL 465
+ L
Sbjct: 536 GLAHL 540
>gi|46447549|ref|YP_008914.1| hypothetical protein pc1915 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401190|emb|CAF24639.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 683
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 234/412 (56%), Gaps = 12/412 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ ++C ++D GL HL L+ L L +T G+
Sbjct: 261 NLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHLAPLTALQYLDLSHCRNLTDTGLAHL 320
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L LDL C I GL +L L L++L++ C +TD+ + L+ LT L+ L
Sbjct: 321 TPLTALQHLDLRVCKNITDAGLAHLAPLTALQNLDLSDCGHLTDAGLAYLTPLTALQHLN 380
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+ C +TD+G+ +L+ L L L L C +T L L+ L +L +LNL+RC +L+D
Sbjct: 381 LYFCFNLTDAGLVHLRPLTALQTLGLSQCWNLTDTGLAHLTPLTALQHLNLSRCYKLTDA 440
Query: 244 GCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTN 301
G + + +L+ LNL + E +TD+ L HL LT L+ L L C + D GL +LT LT
Sbjct: 441 GLAHLTPLTALQHLNLSYCENLTDDGLAHLAPLTALQYLRLSQCWKLTDAGLAHLTPLTA 500
Query: 302 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR 359
L+ +NLS ++D L +L L++L+ L+L +TD GLA LT L+GL HL L +
Sbjct: 501 LQHLNLSRCYKLTDAGLARLTPLTALQHLDLKYCINLTDAGLARLTPLSGLQHLALTNCK 560
Query: 360 -ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+TD+G A+L L+ L + LTD G+ H+ L++L L+LS+ +LTD L +
Sbjct: 561 YLTDAGLAHLTLLTALQYLALANCKNLTDVGLAHLTPLTALQHLDLSECRHLTDAGLAHL 620
Query: 418 SGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 467
+ LTGL LN+S R +T AGL HL PL L+ L L C ++T + + R ++
Sbjct: 621 TPLTGLQHLNLSWCRNLTDAGLAHLSPLSVLQHLALSQCSRLTDDGLDRFKT 672
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 358 ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
A +TD+ L+N KNL+ L + G LTDAG+ H+ L+ L LNLS NLTD L
Sbjct: 235 AHLTDAHLLVLKNCKNLKVLYLQGCRNLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAH 294
Query: 417 ISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 456
++ LT L L++S+ R +T GL HL PL L+ L L CK
Sbjct: 295 LAPLTALQYLDLSHCRNLTDTGLAHLTPLTALQHLDLRVCK 335
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L +DLS +TD+GL HL + LQ L+ ++C ++D GL HL LS L L+ +
Sbjct: 599 TALQHLDLSECRHLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHLSPLSVLQHLALSQ 658
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
+ +T G+ F L + L++ R
Sbjct: 659 CSRLTDDGLDRFKTLATSLNLEIVR 683
>gi|46446910|ref|YP_008275.1| hypothetical protein pc1276 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400551|emb|CAF24000.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 667
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 153/419 (36%), Positives = 237/419 (56%), Gaps = 14/419 (3%)
Query: 66 GSDVTDSGLIHLKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S VT+ I LK SN ++ L+F+ I ++D L L+ NL +L + + +T G+
Sbjct: 243 ASHVTEFEKI-LKHFSNEIERLNFSKNIFLTDAHLLALKNCKNLKALHLQECDKLTDAGL 301
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A L+ L L+L C + GL +L LM L+ LN+ C+ ITD+ + L+ L L+
Sbjct: 302 AHLASLMALQHLNLNGCWELTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLTSLVALQ 361
Query: 184 SLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-L 240
L +SC + +TD+G+ +L+ L LT LNL C +T A L L++L +L +L+L+ C+ L
Sbjct: 362 HLDLSCCRNLTDAGLTHLRPLVALTHLNLAKCHKITDAGLAHLTSLVALQHLDLSYCEKL 421
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+D G + + +L+ L+L + + T+ L HL L L+ LNL+SC D GL +LT
Sbjct: 422 TDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLNLNSCYKFTDAGLAHLTS 481
Query: 299 LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLF 356
L L+ ++LS ++D L LA L +L+ L+L + T+ GLA LTSL L HLDL
Sbjct: 482 LVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLDLS 541
Query: 357 GAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
R +TD+G A+L + L+ L++ LTDAG++H+ L +L L+LS LTD L
Sbjct: 542 CCRNLTDAGLAHLTSLVALQHLDLSSCKKLTDAGLEHLTPLVALQHLDLSSCKKLTDAGL 601
Query: 415 ELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQSRDLP 471
++ L L L++S+ ++T AGL HL PL L+ L L C K+T + +S P
Sbjct: 602 AHLAPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLNLNWCDKLTDAGVAHFKSSVAP 660
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 137/396 (34%), Positives = 217/396 (54%), Gaps = 15/396 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A ++C L+ L L + + D + +AS + L ++L+G ++TD+GL HL
Sbjct: 271 LTDAHLLALKNCKNLKALHLQECDKLTDAGLAHLASLMA-LQHLNLNGCWELTDAGLAHL 329
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
LQ L+ C +I+D GL HL L L L +T G+ L+ L L+
Sbjct: 330 ASLMALQHLNLAKCHKITDAGLAHLTSLVALQHLDLSCCRNLTDAGLTHLRPLVALTHLN 389
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDS 195
L +C +I GL +L L+ L+ L++ +C +TD+ + L+ L L+ L +S S T++
Sbjct: 390 LAKCHKITDAGLAHLTSLVALQHLDLSYCEKLTDAGLAHLTPLVALQHLDLSYSHHFTNA 449
Query: 196 GIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGS 253
G+A+L L L LNL C T A L L++L +L +L+L+ C+ L+D G + + +
Sbjct: 450 GLAHLTSLVALQHLNLNSCYKFTDAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLAPLVA 509
Query: 254 LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-T 310
L+ L+L + + T+ L HL L L+ L+L C + D GL +LT L L+ ++LS
Sbjct: 510 LQHLDLSYSHHFTNAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLTSLVALQHLDLSSCK 569
Query: 311 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 368
++D L L L +L+ L+L + +++TD GLA L L L HLDL ++TD+G A+L
Sbjct: 570 KLTDAGLEHLTPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLDLSSCKKLTDAGLAHL 629
Query: 369 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNL 403
L+ L + LTDAGV H K SS+ L+L
Sbjct: 630 APLVALQHLNLNWCDKLTDAGVAHFK--SSVAPLHL 663
>gi|46446522|ref|YP_007887.1| hypothetical protein pc0888 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400163|emb|CAF23612.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 653
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 153/399 (38%), Positives = 226/399 (56%), Gaps = 12/399 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LKDC NL+ L C I+D GL HL L+ L L +T G+
Sbjct: 236 LTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLT 295
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSLQ 186
L L L+L C ++ GL +L L L+ LN+ C +TD+ + L+ LT L+ L
Sbjct: 296 PLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLN 355
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C K+TD+G+ +LK L L L+L E +T A L L+ L +L +L+L+ C +L+D
Sbjct: 356 LSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTALQHLDLSGCDKLTDV 415
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTN 301
G + + +L+ L+L +T+ LVHLK LT L+ LNL C + D GL +LT LT
Sbjct: 416 GLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTA 475
Query: 302 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR 359
L+ ++LS + ++D L L L++L+ L+L ++TD GLA LT LT L HL L R
Sbjct: 476 LQHLDLSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCR 535
Query: 360 -ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+TD+G A+L + L+ L + GG LT AG+ H++ L +L L+LS LTD L +
Sbjct: 536 NLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHL 595
Query: 418 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
+ L L L++S +T AGL HL+PL L+ L L C
Sbjct: 596 TPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYC 634
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 146/418 (34%), Positives = 230/418 (55%), Gaps = 14/418 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A +DC L+ L L + + D + + + ++L ++LS +TD+GL HL
Sbjct: 236 LTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHL-TPLTALQHLELSDCRKLTDAGLAHL 294
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKL 136
+ LQ L+ +FC +++D GL HL L+ L L+ R +T G+ L L L
Sbjct: 295 TPLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHL 354
Query: 137 DLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
+L C ++ GLV+LK L L+ L+++ +T + + L+ LT L+ L +S C K+TD
Sbjct: 355 NLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTALQHLDLSGCDKLTD 414
Query: 195 SGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIG 252
G+A+L L L L+L+ C +T A L L L L +LNL+ C L+D G + +
Sbjct: 415 VGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLT 474
Query: 253 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSF- 309
+L+ L+L +++TD+ L HL LT L+ L+L C + D+GL +LT LT L+ + L+
Sbjct: 475 ALQHLDLSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARC 534
Query: 310 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAY 367
++D L L L +L+ LNL ++T GLA L L L HLDL + +TD+G A+
Sbjct: 535 RNLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAH 594
Query: 368 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L L+ L++ GLTDAG+ H++ L +L L+LS LTD L L ++
Sbjct: 595 LTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDAGLAHFKFLAAII 652
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 174/317 (54%), Gaps = 33/317 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-------------------GLSNLT 109
+TD+GL HL + LQ L+ +FC +++D GL HL+ GL++LT
Sbjct: 337 LTDAGLAHLTPLTALQHLNLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLT 396
Query: 110 SLSFRRN------NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNI 162
+L+ ++ + +T G+ L L LDL+RC + + GLV+LK L L+ LN+
Sbjct: 397 TLTALQHLDLSGCDKLTDVGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNL 456
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 220
C +TD+ + L+ LT L+ L +S CSK+TD G+A+L L L L+L C +T
Sbjct: 457 SECYHLTDAGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDG 516
Query: 221 LDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNL 278
L L+ L +L +L L RC+ L+D G + + +L+ LNL G ++T L HL+ L L
Sbjct: 517 LAHLTPLTALQHLVLARCRNLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVAL 576
Query: 279 ESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQ 335
+ L+L C G+ D GL +LT L L+ ++LS+ G++D L L L +L+ L+L
Sbjct: 577 QHLDLSYCNGLTDAGLAHLTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDG 636
Query: 336 ITDTGLAALTSLTGLTH 352
+TD GLA L + H
Sbjct: 637 LTDAGLAHFKFLAAIIH 653
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 154/282 (54%), Gaps = 35/282 (12%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
+ +TD+ + LK + L +L+LE C V T L L+ L +L +L L+ C +L+D G
Sbjct: 234 AYLTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAH 293
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC--GIGDEGLVNLTGLTNLES 304
+ + +L+ LNL F +++TD L HL LT L+ LNL C + D GL +LT LT L+
Sbjct: 294 LTPLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQH 353
Query: 305 INLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RIT 361
+NLSF ++D L L L+ L+ L+L + ++T GLA LT+LT L HLDL G ++T
Sbjct: 354 LNLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTALQHLDLSGCDKLT 413
Query: 362 DSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
D G A+L L+ L++ C LT+AG+ H+K L+ L LNLS+ +LTD
Sbjct: 414 DVGLAHLTPLTTLQHLDLKRCRN-LTNAGLVHLKLLTGLQHLNLSECYHLTD-------- 464
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
AGL HL PL L+ L L C +D
Sbjct: 465 ----------------AGLAHLTPLTALQHLDLSQCSKLTDD 490
>gi|46447653|ref|YP_009018.1| hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401294|emb|CAF24743.1| hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 959
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 152/408 (37%), Positives = 225/408 (55%), Gaps = 17/408 (4%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ+LD +FC +++D GL HL+ L L L+ + +T G+
Sbjct: 479 NITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKPLVALKQLNLWACSNLTGAGLAHL 538
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
LI L LDL C + GL +LK L+ L+ L++ C +TD+ + L+ L L+ L
Sbjct: 539 TPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLSGCKKLTDAGLAHLTSLITLQQLN 598
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
I SC+ +TD G+A+LK L L LNL C +T L L++L +L +L+L+ C L+D
Sbjct: 599 ISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDA 658
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTN 301
G + + +L+ L+L F +TD L HL L L+ L L +CG + D GL +LT L
Sbjct: 659 GLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLAHLTPLVA 718
Query: 302 LESINLS----FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLF 356
L+ +NLS TG+ L L L++L L+L A +TD GLA LT+L LT+L+L
Sbjct: 719 LQQLNLSGCKKLTGV---GLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVALTYLNLS 775
Query: 357 GA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
T +G +L+ L+ L + G LTDAG+ ++K L +L LNL +TD L
Sbjct: 776 DCNNFTGAGLTHLKPLVALQYLSLSGCKKLTDAGLAYLKPLVALQQLNLRGCKKITDAGL 835
Query: 415 ELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+ L L L++S ++T GL HLKPL L L+L C +D
Sbjct: 836 THLMSLVALQCLSLSGCKKLTDDGLAHLKPLVALTHLSLGECVKLTDD 883
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 150/401 (37%), Positives = 225/401 (56%), Gaps = 12/401 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL +L+ LQ L+ N C +++D GL HL+ L LT L+ + + +T G+
Sbjct: 403 NITDNGLAYLRPLIALQGLNLNGCKKLTDAGLVHLKSLVTLTYLNLSQCDDLTDAGLAHL 462
Query: 128 AGLINLVKLDLERCTR--IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+ L LDL C GL +L L+ L++L++ +C +TD + L L LK L
Sbjct: 463 TPLVALQHLDLSFCCYNITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKPLVALKQL 522
Query: 186 QI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
+ +CS +T +G+A+L L L L+L C +T L L L +L YL+L+ C +L+D
Sbjct: 523 NLWACSNLTGAGLAHLTPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLSGCKKLTD 582
Query: 243 DGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLT 300
G + + +L+ LN+ +TD+ L HLK L L+ LNL SC + GL +LT L
Sbjct: 583 AGLAHLTSLITLQQLNISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLV 642
Query: 301 NLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG- 357
NL ++LS G ++D L LA L +L+ L+L+ +TD GLA L +L L L L
Sbjct: 643 NLTHLSLSECGNLTDAGLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSAC 702
Query: 358 ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+TD+G A+L L+ L + G LT G+ H+ L++LT L+LS NLTD L
Sbjct: 703 GNLTDAGLAHLTPLVALQQLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAH 762
Query: 417 ISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
++ L L LN+S+ + T AGL HLKPL L+ L+L CK
Sbjct: 763 LTTLVALTYLNLSDCNNFTGAGLTHLKPLVALQYLSLSGCK 803
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 139/393 (35%), Positives = 205/393 (52%), Gaps = 12/393 (3%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
AL+ L LG G+ D + + +L + LSG +TD+GL HL LQ L+ +
Sbjct: 543 ALKHLDLGFCYGLTDDGLAHLKPL-VALQYLSLSGCKKLTDAGLAHLTSLITLQQLNISS 601
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL HL+ L L L+ +T G+ L+NL L L C + GL
Sbjct: 602 CANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDAGLA 661
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+L L+ L+ L++ +C +TD+ + L L L+ L +S C +TD+G+A+L L L
Sbjct: 662 HLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLAHLTPLVALQQ 721
Query: 209 LNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEIT 265
LNL GC +T L L++L +L +L+L+ C L+DDG + + +L LNL N T
Sbjct: 722 LNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVALTYLNLSDCNNFT 781
Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLAGL 323
L HLK L L+ L+L C + D GL L L L+ +NL I+D L L L
Sbjct: 782 GAGLTHLKPLVALQYLSLSGCKKLTDAGLAYLKPLVALQQLNLRGCKKITDAGLTHLMSL 841
Query: 324 SSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG 381
+L+ L+L +++TD GLA L L LTHL L ++TD G A+L L L +
Sbjct: 842 VALQCLSLSGCKKLTDDGLAHLKPLVALTHLSLGECVKLTDDGLAHLTPLLALTHLNLSD 901
Query: 382 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
LT AG+ H+ L +LT ++L+ N TD T
Sbjct: 902 CNNLTVAGLAHLTPLENLTYVDLNNCNNFTDVT 934
>gi|306012373|gb|ADM75240.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012405|gb|ADM75256.1| leucine rich repeat-like protein, partial [Picea sitchensis]
Length = 137
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/135 (68%), Positives = 114/135 (84%)
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+ LN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
LSQN +LTD LE ISG+T LVSLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT +I
Sbjct: 61 LSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 463 KRLQSRDLPNLVSFR 477
++LQ+ LPNL R
Sbjct: 121 RKLQATALPNLAGVR 135
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ LT L L + +++TD G + L+ +KL L L G +T A + ++ L S+ LNL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 236 NR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ L+D E S + +L LN+ +T+ L HL+ L NL SL+L +C + +
Sbjct: 62 SQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEIR 121
Query: 295 NL--TGLTNLESINL 307
L T L NL + L
Sbjct: 122 KLQATALPNLAGVRL 136
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
L L GL++L R IT G L L+L + G+ N+K L +
Sbjct: 1 ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
SLN+ + +TD ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT
Sbjct: 57 MSLNLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Query: 218 AACLDSLSA 226
+ L A
Sbjct: 117 WPEIRKLQA 125
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L LT L L+L I D G L L+S+ L I+D ++ + L+S+ SLNL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 332 DAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+TD L ++ +T L L++ R+T++G +LR KNL SL + +T
Sbjct: 62 SQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT---WP 118
Query: 391 HIKDLSSLTLLNLS 404
I+ L + L NL+
Sbjct: 119 EIRKLQATALPNLA 132
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF-TGI 312
L L+L ITD L+ L+SL L I D G+ N+ LT++ S+NLS + +
Sbjct: 8 LTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNLSQNSHL 67
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
+DG+L ++G+++L SLN+ ++T+ GL L L LT L L ++T
Sbjct: 68 TDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 77/134 (57%), Gaps = 6/134 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DL G+ +TD G L+ LQSL+ C I+D G+++++ L+++ SL+ +
Sbjct: 6 TGLTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQ 63
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N+ +T ++ +G+ LV L++ + GL +L+ L L SL+++ C +T +++
Sbjct: 64 NSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRK 122
Query: 176 L--SGLTNLKSLQI 187
L + L NL +++
Sbjct: 123 LQATALPNLAGVRL 136
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L++L L +L+L +++D G L+ L L ITD + ++K LT++ SLN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 283 L-DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L + + D L ++G+T L S+N+S T +++ L+ L L +L SL+L A ++T
Sbjct: 61 LSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
>gi|46447588|ref|YP_008953.1| hypothetical protein pc1954 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401229|emb|CAF24678.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 704
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 147/399 (36%), Positives = 221/399 (55%), Gaps = 11/399 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL +L + LQ L+ + C ++D GL HL L+ L L R +TA G+
Sbjct: 257 LTDDGLAYLTSLTGLQHLNLSGCYHLTDTGLAHLTPLTGLQHLDLRICEYLTATGLAHLK 316
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C + GL +L L L+ L++ +C + D+ + L+ LT L+ L +
Sbjct: 317 PLKALQHLDLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTPLTGLQHLDL 376
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S K+TD+G+A+L L L L+L C +T L L L +L +LNL C+ L+DDG
Sbjct: 377 SGYHKLTDAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDG 436
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNL 302
+ + +L+ L+L + ++TD L HL LT L+ L+L C + D GL +L L L
Sbjct: 437 LAHLAPLTALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPLKAL 496
Query: 303 ESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGAR 359
+ +NL + ++D L LA L++L+ L+L D +TD GLA LT LT L HLDL +
Sbjct: 497 QHLNLRNCRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQHLDLKYCIN 556
Query: 360 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+T +G A+L L+ L++ L DAG+ H+K L++L L LS NLTD L +
Sbjct: 557 LTGAGLAHLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENLTDDGLAHLR 616
Query: 419 GLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 456
LT L L + + + +T AGL HL+ L +L+ L L C+
Sbjct: 617 SLTALQHLALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQ 655
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 150/432 (34%), Positives = 221/432 (51%), Gaps = 40/432 (9%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L ++LSG +TD+GL HL + LQ LD C ++ GL HL+ L L L
Sbjct: 269 TGLQHLNLSGCYHLTDTGLAHLTPLTGLQHLDLRICEYLTATGLAHLKPLKALQHLDLSY 328
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ A L L LDL C ++ GLV L L L+ L++ + +TD+ +
Sbjct: 329 CKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTPLTGLQHLDLSGYHKLTDAGLA 388
Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
L+ LT L+ L +S C +TD G+A+L L+ L LNL C +T L L+ L +L +
Sbjct: 389 HLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDGLAHLAPLTALQH 448
Query: 233 LNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIG 289
L+L+ C QL+D G + + L+ L+L + E +TD L HL L L+ LNL +C +
Sbjct: 449 LDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPLKALQHLNLRNCRNLT 508
Query: 290 DEGLVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL 347
D+GLV+L LT L+ ++LS ++D L L L++L+ L+L +T GLA L L
Sbjct: 509 DDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQHLDLKYCINLTGAGLAHLAFL 568
Query: 348 TGLTHLDL--------------------------FGARITDSGAAYLRNFKNLRSLE-IC 380
TGL +LDL + +TD G A+LR+ L+ L I
Sbjct: 569 TGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENLTDDGLAHLRSLTALQHLALIH 628
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLR 439
LTDAG+ H++ L+SL L+L NLT L + LT L L ++ + +T GL
Sbjct: 629 YKNLTDAGLVHLRSLTSLQHLDLRYCQNLTGDGLAHLRTLTALQYLALTQYKNLTDDGLA 688
Query: 440 HLKPLK---NLR 448
K L NLR
Sbjct: 689 RFKTLASSTNLR 700
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 136/398 (34%), Positives = 199/398 (50%), Gaps = 36/398 (9%)
Query: 13 ELVYSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVT 70
+L Y + LT V L ALQ L L + D + V + + L +DLSG +T
Sbjct: 325 DLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGL-VYLTPLTGLQHLDLSGYHKLT 383
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL + LQ LD ++C ++D GL HL L L L+ R +T G+ A L
Sbjct: 384 DAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDGLAHLAPL 443
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-C 189
L LDL C + +TD+ + L+ LT L+ L +S C
Sbjct: 444 TALQHLDLSYCWQ------------------------LTDAGLAHLTPLTGLQRLDLSYC 479
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
+TD G+A+L L+ L LNL C +T L L+ L +L +L+L+ C L+D G
Sbjct: 480 ENLTDVGLAHLIPLKALQHLNLRNCRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAH 539
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESI 305
+ + +L+ L+L + +T L HL LT L+ L+L C + D GLV+L LT L+ +
Sbjct: 540 LTPLTALQHLDLKYCINLTGAGLAHLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYL 599
Query: 306 NLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITD 362
LS+ ++D L L L++L+ L L + +TD GL L SLT L HLDL + +T
Sbjct: 600 GLSYCENLTDDGLAHLRSLTALQHLALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQNLTG 659
Query: 363 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLT 399
G A+LR L+ L + LTD G+ K L+S T
Sbjct: 660 DGLAHLRTLTALQYLALTQYKNLTDDGLARFKTLASST 697
>gi|46446377|ref|YP_007742.1| hypothetical protein pc0743 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400018|emb|CAF23467.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 765
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 163/456 (35%), Positives = 245/456 (53%), Gaps = 14/456 (3%)
Query: 13 ELVYSR--CLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
EL +S+ LT+ L A ++C L+ L L + D + + ++L +DLSG ++
Sbjct: 262 ELNFSKNAHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPL-AALKHLDLSGCEL 320
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
TD GL+HL + LQ LD + C +D GL HL+ L L L+ +T G+
Sbjct: 321 TDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKL 380
Query: 130 LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L+ L LDL C GL +LK L+ L+ LN+ +C +TD+ + L+ L L+ L ++
Sbjct: 381 LVALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSYCGNLTDAGLAHLTPLMALQHLDLN 440
Query: 189 -CSKVTDSGIAYLKGLQKLTLLNLE-GCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
C +TD+G+ +L L L LNL T A L L+ L +L +LNL+ C +D G
Sbjct: 441 GCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYCGNFTDAGL 500
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLES 304
+ + +LK L+L E+TD+ L HLK L L+ LNL CG + D+GL +L L L+
Sbjct: 501 AHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHLKLLVALQH 560
Query: 305 INLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARIT 361
++LS ++ L L L +L+ LNL ++TD GL LT L L HLDL ++T
Sbjct: 561 LDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLDLSHCGKLT 620
Query: 362 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
+G A+L+ L+ L + G LTDAG+ ++ L +L L+LS NLTD L +S L
Sbjct: 621 GAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDLSHCGNLTDAGLVNLSPL 680
Query: 421 TGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L L++S+ +T GL +LK L L+ L L C
Sbjct: 681 MALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHC 716
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 150/395 (37%), Positives = 214/395 (54%), Gaps = 11/395 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HLK LQ LD + C +D GL HL+ L L L+ +T G+
Sbjct: 370 LTDAGLAHLKLLVALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSYCGNLTDAGLAHLT 429
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C + GL +L L+ L+ LN+ W TD+ + L+ L L+ L +
Sbjct: 430 PLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNL 489
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
S C TD+G+A+L L L L+L GC +T L L L +L +LNL+ C +L+DDG
Sbjct: 490 SYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGL 549
Query: 246 EKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLE 303
+ +L+ L+L G +++T L HLK L L+ LNL CG + D+GLVNLT L L
Sbjct: 550 AHLKLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALR 609
Query: 304 SINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARI 360
++LS G ++ L L L +L+ LNL ++TD GL L+ L L HLDL +
Sbjct: 610 HLDLSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDLSHCGNL 669
Query: 361 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
TD+G L L+ L++ G LTD G+ ++K L +L L+LS NLTD L +S
Sbjct: 670 TDAGLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLTDDGLAHLSP 729
Query: 420 LTGLVSLNVS--NSRITSAGLRHLKPLKNLRSLTL 452
L L L+ S N+ +GL HL L +L+ L L
Sbjct: 730 LIALQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDL 764
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 126/357 (35%), Positives = 181/357 (50%), Gaps = 34/357 (9%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DL+G ++TD+GL HL LQ L+ ++ +D GL HL L L L+
Sbjct: 433 ALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYC 492
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
T G+ L L LDL C GL +LK L+ L+ LN+ +
Sbjct: 493 GNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSY------------ 540
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNL 235
C K+TD G+A+LK L L L+L GC +T A L L L +L +LNL
Sbjct: 541 ------------CGKLTDDGLAHLKLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNL 588
Query: 236 NRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEG 292
+ C +L+DDG + + +L+ L+L ++T L HLK L L+ LNL CG + D G
Sbjct: 589 SHCGKLTDDGLVNLTPLAALRHLDLSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAG 648
Query: 293 LVNLTGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGL 350
LVNL+ L L+ ++LS G ++D L L+ L +L+ L+L +TD GL L L L
Sbjct: 649 LVNLSPLMALQHLDLSHCGNLTDAGLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVAL 708
Query: 351 THLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTD-AGVKHIKDLSSLTLLNLS 404
HLDL +TD G A+L L+ L+ LTD +G+ H+ L L L+LS
Sbjct: 709 QHLDLSHCGNLTDDGLAHLSPLIALQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDLS 765
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 146/283 (51%), Gaps = 29/283 (10%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ +TD+ + LK + L +LNL+ C +T A L L+ L +L +L+L+ C+L+DDG
Sbjct: 269 AHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPLAALKHLDLSGCELTDDGLVHL 328
Query: 249 SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESIN 306
+ + +L+ L+L TD L HLK L L+ LNL CG + D GL +L L L+ ++
Sbjct: 329 TPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKLLVALQHLD 388
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGA 365
LS R TD GLA L L L HL+L + +TD+G
Sbjct: 389 LS-----------------------HCRNFTDAGLAHLKLLVALQHLNLSYCGNLTDAGL 425
Query: 366 AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
A+L L+ L++ G LTDAG+ H+ L L LNLS N N TD L ++ L L
Sbjct: 426 AHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQ 485
Query: 425 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
LN+S T AGL HL L L+ L L C++T + + L+
Sbjct: 486 HLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLK 528
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 453
L+ + LN S+N +LTD L + L LN+ +T AGL HL PL L+ L L
Sbjct: 257 LNEIEELNFSKNAHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPLAALKHLDLS 316
Query: 454 SCKVTANDIKRL 465
C++T + + L
Sbjct: 317 GCELTDDGLVHL 328
>gi|306012335|gb|ADM75221.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012337|gb|ADM75222.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012341|gb|ADM75224.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012343|gb|ADM75225.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012345|gb|ADM75226.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012347|gb|ADM75227.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012349|gb|ADM75228.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012353|gb|ADM75230.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012355|gb|ADM75231.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012357|gb|ADM75232.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012361|gb|ADM75234.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012363|gb|ADM75235.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012365|gb|ADM75236.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012367|gb|ADM75237.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012369|gb|ADM75238.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012375|gb|ADM75241.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012377|gb|ADM75242.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012379|gb|ADM75243.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012383|gb|ADM75245.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012385|gb|ADM75246.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012387|gb|ADM75247.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012389|gb|ADM75248.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012393|gb|ADM75250.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012399|gb|ADM75253.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012407|gb|ADM75257.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012409|gb|ADM75258.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012411|gb|ADM75259.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012413|gb|ADM75260.1| leucine rich repeat-like protein, partial [Picea sitchensis]
Length = 137
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/135 (67%), Positives = 114/135 (84%)
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+ LN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
LSQN +LTD LE ISG+T L+SLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT +I
Sbjct: 61 LSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 463 KRLQSRDLPNLVSFR 477
++LQ+ LPNL R
Sbjct: 121 RKLQATALPNLAGVR 135
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ LT L L + +++TD G + L+ +KL L L G +T A + ++ L S+ LNL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 236 NR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ L+D E S + +L LN+ +T+ L HL+ L NL SL+L +C + +
Sbjct: 62 SQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEIR 121
Query: 295 NL--TGLTNLESINL 307
L T L NL + L
Sbjct: 122 KLQATALPNLAGVRL 136
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
L L GL++L R IT G L L+L + G+ N+K L +
Sbjct: 1 ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
SLN+ + +TD ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT
Sbjct: 57 MSLNLSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Query: 218 AACLDSLSA 226
+ L A
Sbjct: 117 WPEIRKLQA 125
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L LT L L+L I D G L L+S+ L I+D ++ + L+S+ SLNL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 332 DAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+TD L ++ +T L L++ R+T++G +LR KNL SL + +T
Sbjct: 62 SQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT---WP 118
Query: 391 HIKDLSSLTLLNLS 404
I+ L + L NL+
Sbjct: 119 EIRKLQATALPNLA 132
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF-TGI 312
L L+L ITD L+ L+SL L I D G+ N+ LT++ S+NLS + +
Sbjct: 8 LTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNLSQNSHL 67
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
+DG+L ++G+++L SLN+ ++T+ GL L L LT L L ++T
Sbjct: 68 TDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 77/134 (57%), Gaps = 6/134 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DL G+ +TD G L+ LQSL+ C I+D G+++++ L+++ SL+ +
Sbjct: 6 TGLTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQ 63
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N+ +T ++ +G+ L+ L++ + GL +L+ L L SL+++ C +T +++
Sbjct: 64 NSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRK 122
Query: 176 L--SGLTNLKSLQI 187
L + L NL +++
Sbjct: 123 LQATALPNLAGVRL 136
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L++L L +L+L +++D G L+ L L ITD + ++K LT++ SLN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 283 L-DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L + + D L ++G+T L S+N+S T +++ L+ L L +L SL+L A ++T
Sbjct: 61 LSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
>gi|46447144|ref|YP_008509.1| hypothetical protein pc1510 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400785|emb|CAF24234.1| hypothetical protein pc1510 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 670
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 151/397 (38%), Positives = 211/397 (53%), Gaps = 11/397 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ L+ LK C NL+ L C ++D GL HL L L L + + +T G+
Sbjct: 275 ENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLPHLTPLVALQYLDLSKCHNLTDAGL 334
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L L C + GL +LK L+ L+ LN+ CN TD+ + L+ L LK
Sbjct: 335 THLTFLDALNYLGLGECYNLTDTGLAHLKSLINLQHLNLNNCN-FTDAGLAHLTPLVTLK 393
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L +S C +TD+G+A+L L L LNL C +T L LS L +L +LNLN C+L
Sbjct: 394 YLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCTNLTDTGLAYLSPLVTLQHLNLNVCKLI 453
Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
D G + + +L+ LNL + +TD L HL L L+ L+LD C + D GL +LT L
Sbjct: 454 DAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLSTLVTLQHLDLDGCYKLTDIGLAHLTPL 513
Query: 300 TNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFG 357
L+ +NLS ++ L L L +LK L+L + D GLA LT L L +LDL
Sbjct: 514 VTLKYLNLSCCHNLTGAGLAHLTPLVALKHLDLSWNGDLEDAGLAHLTPLVALKYLDLSE 573
Query: 358 -ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+TD+G A+LR+ L+ L++ G LTDAG+ H+ L +L L+L NLTD L
Sbjct: 574 CYHLTDAGLAHLRSLVALKHLDLRGCYQLTDAGIAHLTPLVALKYLDLKGCPNLTDAGLA 633
Query: 416 LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 451
++ L L L + N RIT AGL HL LR T
Sbjct: 634 HLTSLIALQDLELPNCQRITDAGLAHLASSMTLRIWT 670
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 207/379 (54%), Gaps = 16/379 (4%)
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCI 168
+L+F N +T + A NL L L++C + GL +L L+ L+ L++ C+ +
Sbjct: 270 ALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLPHLTPLVALQYLDLSKCHNL 329
Query: 169 TDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
TD+ + L+ L L L + C +TD+G+A+LK L L LNL C T A L L+ L
Sbjct: 330 TDAGLTHLTFLDALNYLGLGECYNLTDTGLAHLKSLINLQHLNLNNCNFTDAGLAHLTPL 389
Query: 228 GSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDS 285
+L YLNL++C L+D G + + +L+ LNL +TD L +L L L+ LNL+
Sbjct: 390 VTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCTNLTDTGLAYLSPLVTLQHLNLNV 449
Query: 286 CGIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 343
C + D GL +LT L NL+ +NLS+ T ++D L L+ L +L+ L+LD ++TD GLA
Sbjct: 450 CKLIDAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLSTLVTLQHLDLDGCYKLTDIGLAH 509
Query: 344 LTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLL 401
LT L L +L+L +T +G A+L L+ L++ G L DAG+ H+ L +L L
Sbjct: 510 LTPLVTLKYLNLSCCHNLTGAGLAHLTPLVALKHLDLSWNGDLEDAGLAHLTPLVALKYL 569
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK---- 456
+LS+ +LTD L + L L L++ ++T AG+ HL PL L+ L L+ C
Sbjct: 570 DLSECYHLTDAGLAHLRSLVALKHLDLRGCYQLTDAGIAHLTPLVALKYLDLKGCPNLTD 629
Query: 457 ---VTANDIKRLQSRDLPN 472
+ LQ +LPN
Sbjct: 630 AGLAHLTSLIALQDLELPN 648
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 160/296 (54%), Gaps = 7/296 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L+ + TD+GL HL L+ L+ + C ++D GL HL L NL L+
Sbjct: 367 NLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCT 426
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+ + L+ L L+L C I GL +L L+ L+ LN+ +C +TD+ + LS
Sbjct: 427 NLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLS 486
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL 235
L L+ L + C K+TD G+A+L L L LNL C +T A L L+ L +L +L+L
Sbjct: 487 TLVTLQHLDLDGCYKLTDIGLAHLTPLVTLKYLNLSCCHNLTGAGLAHLTPLVALKHLDL 546
Query: 236 N-RCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
+ L D G + + +LK L+L +TD L HL+ L L+ L+L C + D G
Sbjct: 547 SWNGDLEDAGLAHLTPLVALKYLDLSECYHLTDAGLAHLRSLVALKHLDLRGCYQLTDAG 606
Query: 293 LVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS 346
+ +LT L L+ ++L ++D L L L +L+ L L + ++ITD GLA L S
Sbjct: 607 IAHLTPLVALKYLDLKGCPNLTDAGLAHLTSLIALQDLELPNCQRITDAGLAHLAS 662
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 116/217 (53%), Gaps = 7/217 (3%)
Query: 246 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTN 301
EK S +V L F+E +TD L+ LK NL+ L L C + D GL +LT L
Sbjct: 258 EKILNYFSNEVEALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLPHLTPLVA 317
Query: 302 LESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR 359
L+ ++LS ++D L L L +L L L + +TDTGLA L SL L HL+L
Sbjct: 318 LQYLDLSKCHNLTDAGLTHLTFLDALNYLGLGECYNLTDTGLAHLKSLINLQHLNLNNCN 377
Query: 360 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
TD+G A+L L+ L + LTDAG+ H+ L +L LNLS NLTD L +S
Sbjct: 378 FTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCTNLTDTGLAYLS 437
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L L LN++ ++ AGL HL PL NL+ L L C
Sbjct: 438 PLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYC 474
>gi|306012339|gb|ADM75223.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012351|gb|ADM75229.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012359|gb|ADM75233.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012371|gb|ADM75239.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012381|gb|ADM75244.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012391|gb|ADM75249.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012395|gb|ADM75251.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012397|gb|ADM75252.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012401|gb|ADM75254.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012403|gb|ADM75255.1| leucine rich repeat-like protein, partial [Picea sitchensis]
Length = 137
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 92/135 (68%), Positives = 114/135 (84%)
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+ LN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
LSQN +LTD LE ISG+T LVSLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT +I
Sbjct: 61 LSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 463 KRLQSRDLPNLVSFR 477
++LQ+ LPNL R
Sbjct: 121 RKLQATALPNLAGVR 135
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ LT L L + +++TD G + L+ +KL L L G +T A + ++ L S+ LNL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 236 NR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ L+D E S + +L LN+ +T+ L HL+ L NL SL+L +C + +
Sbjct: 62 SQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEIR 121
Query: 295 NL--TGLTNLESINL 307
L T L NL + L
Sbjct: 122 KLQATALPNLAGVRL 136
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
L L GL++L R IT G L L+L + G+ N+K L +
Sbjct: 1 ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
SLN+ + +TD ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT
Sbjct: 57 MSLNLSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Query: 218 AACLDSLSA 226
+ L A
Sbjct: 117 WPEIRKLQA 125
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L LT L L+L I D G L L+S+ L I+D ++ + L+S+ SLNL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 332 DAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+TD L +++ +T L L++ R+T++G +LR KNL SL + +T
Sbjct: 62 SQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT---WP 118
Query: 391 HIKDLSSLTLLNLS 404
I+ L + L NL+
Sbjct: 119 EIRKLQATALPNLA 132
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
+ + L L+L ITD L+ L+SL L I D G+ N+ LT++ S+NL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
S + ++DG+L ++G+++L SLN+ ++T+ GL L L LT L L ++T
Sbjct: 62 SQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 78/134 (58%), Gaps = 6/134 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DL G+ +TD G L+ LQSL+ C I+D G+++++ L+++ SL+ +
Sbjct: 6 TGLTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQ 63
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N+ +T +++ +G+ LV L++ + GL +L+ L L SL+++ C +T +++
Sbjct: 64 NSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRK 122
Query: 176 L--SGLTNLKSLQI 187
L + L NL +++
Sbjct: 123 LQATALPNLAGVRL 136
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L++L L +L+L +++D G L+ L L ITD + ++K LT++ SLN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 283 L-DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L + + D L +++G+T L S+N+S T +++ L+ L L +L SL+L A ++T
Sbjct: 61 LSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
>gi|348682865|gb|EGZ22681.1| hypothetical protein PHYSODRAFT_491927 [Phytophthora sojae]
Length = 648
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 158/516 (30%), Positives = 241/516 (46%), Gaps = 51/516 (9%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMD-VIASQGSSLL 60
LP +++ + L L + +A L + L GV D W D V + L
Sbjct: 142 LPPELAASVLQWLKRHYVLDKPQFQALAPFLLLEWSLADLQGVEDSWFDGVPQTTLQQLK 201
Query: 61 SVDLSGSDVTDSGLIHLKDC-----------SNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
S+D+SG IHL L + F C ++ +E LR + L
Sbjct: 202 SIDVSGC-------IHLHQLGAEWGYATTKLPELLAASFQGCTGLTKESIEMLRFSTKLA 254
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCI 168
+L+ + + +KA + L L L L C ++ G+ L + KLE L I C +
Sbjct: 255 ALNLSGCVNVDDKSLKALSELEQLTSLQLVGCRKLTDKGVKYLAKMAKLEKLRIARCRKL 314
Query: 169 TDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSA 226
TD+ ++ + + L+ L ++ ++++ + Y+ ++ L +L + GC + + SLS
Sbjct: 315 TDAALEDFAMMFPKLRELDVANCRLSEKALQYIGQIKSLEVLVIRGCQDICDDGMSSLSG 374
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L +L Y + C ++++ L+VL LG+ + L+ LTNL L L C
Sbjct: 375 LANLKYFDARHCSKIHSIPTEWTQ---LEVLLLGYTAFAESDAAVLQYLTNLHELELRKC 431
Query: 287 GIGDEGLVNLTGLTNLE-------------------------SINLSFTGISDGSLRKLA 321
I G ++ LT+LE ++N+S T ISD LA
Sbjct: 432 RIMKRGFQFISRLTHLERLELGETALTDSGLLEICNSAKSLKALNISNTEISDNGAAGLA 491
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
L L+ L LD IT+ LA L+ L L LDLFGA ITD+G +L L+ L ICG
Sbjct: 492 KLKELRILRLDTPGITNRALANLSFLARLERLDLFGANITDNGLMHLVPLHKLQELSICG 551
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
G + D GV I L+SLT LNLSQN N+ K+L + LTGL LN+SN+ I++ LRHL
Sbjct: 552 GNIGDRGVGLISKLTSLTSLNLSQNRNIRTKSLFYLRALTGLRCLNLSNTGISALSLRHL 611
Query: 442 KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
LK L+SL++ C ++ I L+ LP L R
Sbjct: 612 SSLKELQSLSVYGCSLSQGHIDVLRE-ILPELKCLR 646
>gi|406836026|ref|ZP_11095620.1| leucine-rich repeat-containing protein [Schlesneria paludicola DSM
18645]
Length = 586
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 139/400 (34%), Positives = 218/400 (54%), Gaps = 4/400 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++DLS + +TDS L L NL +++ + +I GL L GL NL +L ++
Sbjct: 149 LTAIDLSETAITDSALKPLSVLENLSTINLS-TTKIDGSGLADLSGLKNLKTLVLS-HSP 206
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + + A L NL L+L GL +L L L LN+ + + D+ + L+
Sbjct: 207 ITNEALAGVAALRNLTTLELWNTPISADGLKSLGTLTDLTKLNLGFT-SLDDTGLAELAT 265
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNLK+L + + VTD+G++ L ++ LT LNL +T A + +++ L L+L
Sbjct: 266 LTNLKALNLMQTGVTDTGLSSLSQIKNLTNLNLNDTQITDAGMVAIARHKDLNELHLEGT 325
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+L+D G +G L VL +G +TD + L G +L+ L L S + DEGL +L G
Sbjct: 326 RLTDVGLRALKTLGELDVLQIGKTAVTDAGVEELAGFKHLKILRLGSTKVSDEGLKSLLG 385
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L +L+S+ L TGI+D ++LA L++L L+LDA +TD G+ L L+ L +L L
Sbjct: 386 LEHLQSLGLGGTGITDVGAKQLASLTTLTGLDLDATAVTDEGVRELGGLSNLEYLSLIST 445
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+I+D G + L FK L+ L + ++D G+K + DLS LT L LS +TD ++ +
Sbjct: 446 KISDDGVSGLGAFKKLKMLFLHNNQISDEGLKGLNDLSQLTTLYLSM-TQVTDVGMKELK 504
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L L L + +++IT AGL+ L L L L + + VT
Sbjct: 505 NLKHLKDLVLCDTQITDAGLKELTGLSELNVLVIRNVAVT 544
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 150/472 (31%), Positives = 237/472 (50%), Gaps = 48/472 (10%)
Query: 6 ISQQIFNELVYSRCLTEVSLE--AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
IS ++L+ R LT + L A D AL+ L + + +L +++
Sbjct: 135 ISDAGLDKLLALRNLTAIDLSETAITDSALKPLSVLE-----------------NLSTIN 177
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + + SGL L NL++L + I++ L + L NLT+L N I+A G
Sbjct: 178 LSTTKIDGSGLADLSGLKNLKTLVLSHS-PITNEALAGVAALRNLTTLELW-NTPISADG 235
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K+ L +L KL+L + GL L L L++LN+ +TD+ + LS + NL
Sbjct: 236 LKSLGTLTDLTKLNLGFTSLDDTGLAELATLTNLKALNLMQTG-VTDTGLSSLSQIKNLT 294
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L ++ +++TD+G+ + + L L+LEG +T L +L LG L L + + ++D
Sbjct: 295 NLNLNDTQITDAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTAVTDA 354
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL---------------------- 281
G E+ + LK+L LG +++DE L L GL +L+SL
Sbjct: 355 GVEELAGFKHLKILRLGSTKVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLASLTTLT 414
Query: 282 --NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+LD+ + DEG+ L GL+NLE ++L T ISD + L LK L L QI+D
Sbjct: 415 GLDLDATAVTDEGVRELGGLSNLEYLSLISTKISDDGVSGLGAFKKLKMLFLHNNQISDE 474
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
GL L L+ LT L L ++TD G L+N K+L+ L +C +TDAG+K + LS L
Sbjct: 475 GLKGLNDLSQLTTLYLSMTQVTDVGMKELKNLKHLKDLVLCDTQITDAGLKELTGLSELN 534
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK-PLKNLRSL 450
+L + +N +TD LE ++ L L + R + AGL K + N+R L
Sbjct: 535 VLVI-RNVAVTDACLEHLTSFKNLTHLCIDVHRFSEAGLNAFKTSMPNVRVL 585
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 199/360 (55%), Gaps = 2/360 (0%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
+ +SF N + + + L L LDL GL L+ L L SLN+++
Sbjct: 52 IVGISFAGNARFNDRYVHLISPLGRLESLDLSNTQITDLGLKELRKLNALTSLNLRYT-A 110
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I+D + LS ++ L +L +S ++++D+G+ L L+ LT ++L +T + L LS L
Sbjct: 111 ISDVGLSELSEMSKLDTLNLSATQISDAGLDKLLALRNLTAIDLSETAITDSALKPLSVL 170
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L +NL+ ++ G S + +LK L L + IT+E L + L NL +L L +
Sbjct: 171 ENLSTINLSTTKIDGSGLADLSGLKNLKTLVLSHSPITNEALAGVAALRNLTTLELWNTP 230
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
I +GL +L LT+L +NL FT + D L +LA L++LK+LNL +TDTGL++L+ +
Sbjct: 231 ISADGLKSLGTLTDLTKLNLGFTSLDDTGLAELATLTNLKALNLMQTGVTDTGLSSLSQI 290
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
LT+L+L +ITD+G + K+L L + G LTD G++ +K L L +L + +
Sbjct: 291 KNLTNLNLNDTQITDAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTA 350
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+TD +E ++G L L + +++++ GL+ L L++L+SL L +T K+L S
Sbjct: 351 -VTDAGVEELAGFKHLKILRLGSTKVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLAS 409
>gi|46447096|ref|YP_008461.1| hypothetical protein pc1462 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400737|emb|CAF24186.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 870
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 153/403 (37%), Positives = 221/403 (54%), Gaps = 17/403 (4%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL + LQ+LD + C + D GL HL L+ L L + +T G+ L
Sbjct: 374 DTGLAHLTSLTALQNLDLSECYLLKDTGLAHLSSLTALQYLDLSGCDDLTDAGLAHLTPL 433
Query: 131 INLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
++L LDL +C + G GL +L L+ L L + C +TD+ + L+ LT LK L +S
Sbjct: 434 VSLQHLDLSKCENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSE 493
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL----NRCQ-LSD 242
C +TD G+ +L L L L+L+ C +T A L L++L +L +L+L CQ L+D
Sbjct: 494 CKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQNLTD 553
Query: 243 DGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLT 300
DG S + +LK L+L + E +TD L HL LT L+ L+L C + DEGL LT L
Sbjct: 554 DGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYLTPLV 613
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITD-TGLAALTSLTGLTHLDLFGA 358
L+ ++L + I+D L LA LS+L+ L+L D R+I GLA LT+L L HLDL G
Sbjct: 614 ALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAHLTTLVNLEHLDLSGC 673
Query: 359 R-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
++ +L + NL+ L + G GL G++ + L +L L+LS NLTDK L
Sbjct: 674 YSLSSFKLIFLSSLVNLQHLNLSGCFGLYHDGLEDLTPLMNLQYLDLSSCINLTDKGLAY 733
Query: 417 ISGLT--GLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 456
++ L GL L++S + IT GL HL L L L L C+
Sbjct: 734 LTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYLDLSWCE 776
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 211/390 (54%), Gaps = 17/390 (4%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + L+ LD + C ++D GL HL L L LS + +T G+
Sbjct: 471 NLTDAGLAHLTPLTALKHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHL 530
Query: 128 AGLINLVKLDLE----RCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
L L LDL C + GL +L L L+ L++ W +TD+ + L+ LT L
Sbjct: 531 TSLTALEHLDLGLDFGYCQNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTAL 590
Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-- 239
K L +S C +TD G+AYL L L L+L+G +T L+ L+ L +L +L+LN C+
Sbjct: 591 KHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRI 650
Query: 240 LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT 297
G + + +L+ L+L G ++ L+ L L NL+ LNL C G+ +GL +LT
Sbjct: 651 YHGYGLAHLTTLVNLEHLDLSGCYSLSSFKLIFLSSLVNLQHLNLSGCFGLYHDGLEDLT 710
Query: 298 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD---ARQITDTGLAALTSLTGLTHL 353
L NL+ ++LS ++D L L L L +LD ++ITDTGLA LTSL GL +L
Sbjct: 711 PLMNLQYLDLSSCINLTDKGLAYLTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYL 770
Query: 354 DL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
DL + +TD G AYL +F L+ L + G +TDAG+ H+ L +L LNLS+ NLTD
Sbjct: 771 DLSWCENLTDKGLAYLTSFAGLKYLNLKGCKKITDAGLAHLTSLVTLQRLNLSECVNLTD 830
Query: 412 KTLELISGLTGLVSLNVSNSR-ITSAGLRH 440
L + L L L + + IT GL H
Sbjct: 831 TGLAHLVSLVNLQDLELRECKSITDTGLAH 860
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 159/442 (35%), Positives = 235/442 (53%), Gaps = 19/442 (4%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ+L L + + D + ++S ++L +DLSG D+TD+GL HL +LQ LD +
Sbjct: 385 ALQNLDLSECYLLKDTGLAHLSSL-TALQYLDLSGCDDLTDAGLAHLTPLVSLQHLDLSK 443
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++ GL HL L L L +T G+ L L LDL C + GLV
Sbjct: 444 CENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSECKNLTDDGLV 503
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-----SCSKVTDSGIAYLKGLQ 204
+L L+ L+ L++K C +TD+ + L+ LT L+ L + C +TD G+A+L L
Sbjct: 504 HLSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQNLTDDGLAHLSSLT 563
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 262
L L+L +T A L L++L +L +L+L+ C+ L+D+G + + +L+ L+L +
Sbjct: 564 ALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYLTPLVALQYLSLKGS 623
Query: 263 EITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLTNLESINLS-FTGISDGSLRK 319
+ITDE L HL L+ L L+L+ C GL +LT L NLE ++LS +S L
Sbjct: 624 DITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAHLTTLVNLEHLDLSGCYSLSSFKLIF 683
Query: 320 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFK--NLR 375
L+ L +L+ LNL + GL LT L L +LDL +TD G AYL + L+
Sbjct: 684 LSSLVNLQHLNLSGCFGLYHDGLEDLTPLMNLQYLDLSSCINLTDKGLAYLTSLVGLGLQ 743
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRI 433
L++ G +TD G+ H+ L L L+LS NLTDK L ++ GL LN+ +I
Sbjct: 744 HLDLSGCKEITDTGLAHLTSLVGLEYLDLSWCENLTDKGLAYLTSFAGLKYLNLKGCKKI 803
Query: 434 TSAGLRHLKPLKNLRSLTLESC 455
T AGL HL L L+ L L C
Sbjct: 804 TDAGLAHLTSLVTLQRLNLSEC 825
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 145/477 (30%), Positives = 223/477 (46%), Gaps = 67/477 (14%)
Query: 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
P I+++ F L+ +CL + + + + + L Y + D V+ + L+ +
Sbjct: 216 PLAITEKKFTNLL--QCLMDANFKLSVEDIPCSIALAHYYQLTD----VVENLEKQLIKI 269
Query: 63 DLSGSDV----TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
S D + LI LK+ N L L +L T +S NN
Sbjct: 270 YQSEEDALFNSNEESLIELKELLNFARL----------YQLNNLINYLEFTVVSGLLNNT 319
Query: 119 ITAQGMKAFAGLINLVKLDLERC--------TRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+ F ++N D+E T H + LK L+ L +K D
Sbjct: 320 ---SHVNEFEKILNHFSTDIEELNLSGKDFFTEAH--FLALKNCKNLKVLCLKIFYTPID 374
Query: 171 SDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALG 228
+ + L+ LT L++L +S C + D+G+A+L L L L+L GC +T A L L+ L
Sbjct: 375 TGLAHLTSLTALQNLDLSECYLLKDTGLAHLSSLTALQYLDLSGCDDLTDAGLAHLTPLV 434
Query: 229 SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC 286
SL +L+L++C+ L+ DG + + +L+ L L +TD L HL LT L+ L+L C
Sbjct: 435 SLQHLDLSKCENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSEC 494
Query: 287 -GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+ D+GLV+L+ L L+ ++L +TD GLA LT
Sbjct: 495 KNLTDDGLVHLSSLVALQYLSLKL-----------------------CENLTDAGLAHLT 531
Query: 346 SLTGLTHLDL---FG--ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLT 399
SLT L HLDL FG +TD G A+L + L+ L++ LTDAG+ H+ L++L
Sbjct: 532 SLTALEHLDLGLDFGYCQNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTALK 591
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
L+LS NLTD+ L ++ L L L++ S IT GL HL L LR L+L C+
Sbjct: 592 HLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCR 648
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIAS-QGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
LQ L L + DK + + S G L +DLSG ++TD+GL HL L+ LD ++
Sbjct: 715 LQYLDLSSCINLTDKGLAYLTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYLDLSW 774
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL +L + L L+ + IT G+ L+ L +L+L C + GL
Sbjct: 775 CENLTDKGLAYLTSFAGLKYLNLKGCKKITDAGLAHLTSLVTLQRLNLSECVNLTDTGLA 834
Query: 150 NLKGLMKLESLNIKWCNCITDS 171
+L L+ L+ L ++ C ITD+
Sbjct: 835 HLVSLVNLQDLELRECKSITDT 856
>gi|46447590|ref|YP_008955.1| hypothetical protein pc1956 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401231|emb|CAF24680.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 659
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 219/402 (54%), Gaps = 11/402 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ L+ LK+C NL+ L C ++D GL HL L L L+ + +T G+
Sbjct: 234 ENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCDKLTNTGL 293
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L+L C + GL +L L L+ LN+ +C+ +TD+ + LS LT L+
Sbjct: 294 AHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRLSPLTALQ 353
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
L +S C +TD+G+ +LK L L LNL C +T A L L L +L +L+L+ C L
Sbjct: 354 HLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLDLSDCNNL 413
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+D G + + +L+ L+L + N +TD LVHLK LT L+ L+L C + D+GL +LT
Sbjct: 414 TDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVADDGLAHLTP 473
Query: 299 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL- 355
LT L++++LS ++D L L L++L+ L L +TD GL L L L HLDL
Sbjct: 474 LTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTDAGLIHLRPLVALQHLDLS 533
Query: 356 FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ +TD G +L L+ L++ LT G+ H++ L++L L+L+Q NLTD L
Sbjct: 534 YCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLTTLQHLSLNQCWNLTDAGL 593
Query: 415 ELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
+ LT L L++S T GL HL L L+ L L C
Sbjct: 594 VHLEPLTALQHLDLSYCGNFTDVGLVHLTSLMALQHLNLRGC 635
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 130/359 (36%), Positives = 202/359 (56%), Gaps = 11/359 (3%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+ +L+F N +T + A NL +L L+ C + GLV+L L+ L+ LN+ +C+
Sbjct: 227 IEALNFSENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCD 286
Query: 167 CITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSL 224
+T++ + L LT L+ L + +C +TD+G+A+L L L LNL C +T L L
Sbjct: 287 KLTNTGLAHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRL 346
Query: 225 SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLN 282
S L +L +L+L+ C+ L+D G + +L+ LNL E +TD LVHLK L L+ L+
Sbjct: 347 SPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLD 406
Query: 283 LDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDT 339
L C + D GL +LT LT L+ ++LS+ ++D L L L++L+ L+L ++ D
Sbjct: 407 LSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVADD 466
Query: 340 GLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 397
GLA LT LT L L L R +TD+G +L+ L+ L + LTDAG+ H++ L +
Sbjct: 467 GLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTDAGLIHLRPLVA 526
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L L+LS NLTD L ++ L L L+++ +T GL HL+ L L+ L+L C
Sbjct: 527 LQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLTTLQHLSLNQC 585
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 122/345 (35%), Positives = 181/345 (52%), Gaps = 34/345 (9%)
Query: 46 DKWMD---VIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
DK D V S ++L +DLS ++TD+GL+HLK LQ L+ + C ++D GL H
Sbjct: 336 DKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVH 395
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESL 160
L+ L L L N +T G+ L L LDL C + GLV+LK L L+ L
Sbjct: 396 LKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHL 455
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTA 218
+++ C+ + D + L+ LT L++L +S C +TD+G+ +LK L L L L C +T
Sbjct: 456 DLRGCDKVADDGLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTD 515
Query: 219 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLT 276
A L L L +L +L+L+ C L+D G + + +L+ L+L + E +T + L HL+ LT
Sbjct: 516 AGLIHLRPLVALQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLT 575
Query: 277 NLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L+ L+L+ C + D GLV+L LT L+ ++LS+ G
Sbjct: 576 TLQHLSLNQCWNLTDAGLVHLEPLTALQHLDLSYCG-----------------------N 612
Query: 336 ITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI 379
TD GL LTSL L HL+L G R+TD G A + F L+I
Sbjct: 613 FTDVGLVHLTSLMALQHLNLRGCDRVTDVGLALFKIFATSLHLKI 657
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 146/253 (57%), Gaps = 8/253 (3%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECL 269
E +T A L +L +L L+L C+ L+D G + + +LK LNL F +++T+ L
Sbjct: 234 ENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCDKLTNTGL 293
Query: 270 VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLK 327
HL+ LT L+ LNL +C + D GL +LT LT L+ +NL+F ++D L +L+ L++L+
Sbjct: 294 AHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRLSPLTALQ 353
Query: 328 SLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGL 384
L+L D +TD GL L L L HL+L +TD+G +L+ L+ L++ L
Sbjct: 354 HLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLDLSDCNNL 413
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKP 443
TDAG+ H+ L++L L+LS NLTD L + LT L L++ ++ GL HL P
Sbjct: 414 TDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVADDGLAHLTP 473
Query: 444 LKNLRSLTLESCK 456
L L++L+L C+
Sbjct: 474 LTALQALSLSQCR 486
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 92/160 (57%), Gaps = 5/160 (3%)
Query: 302 LESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGA 358
+E++N S ++D L L +LK L+L + R +TD GL L L L HL+L F
Sbjct: 227 IEALNFSENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCD 286
Query: 359 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
++T++G A+LR L+ L + LTDAG+ H+ L++L LNL+ LTD L +
Sbjct: 287 KLTNTGLAHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRL 346
Query: 418 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
S LT L L++S+ +T AGL HLKPL L+ L L C+
Sbjct: 347 SPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCE 386
>gi|46446667|ref|YP_008032.1| hypothetical protein pc1033 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400308|emb|CAF23757.1| hypothetical protein pc1033 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 662
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 149/436 (34%), Positives = 232/436 (53%), Gaps = 12/436 (2%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
++D++ +I + + ++L + ++ + LK C NL+ L F C ++D GL HL
Sbjct: 212 LSDEFGRIINHFSNEIKILNLPNKILNNACFLALKSCENLKVLHFKECRHLTDAGLAHLT 271
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNI 162
L+ L L + +T G+ L L L+L + GL +L L L+ L +
Sbjct: 272 PLTALQHLGLGQCWRLTNAGLAHLTPLTALQYLNLSEYKNLTDAGLAHLTPLTALQHLGL 331
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 220
C +TD+ + L+ L L+ L +S C +TD+G+A+L L L LNL C +T A
Sbjct: 332 SGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAG 391
Query: 221 LDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNL 278
L L+ L L +L+L+ CQ L+D G + + L+ L+L G +TD L HL LT L
Sbjct: 392 LAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGL 451
Query: 279 ESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQ 335
+ LNL +C D GL +LT L+ L+ +NLS ++D L L L++L+ L+L +
Sbjct: 452 QHLNLCNCRKFTDNGLAHLTPLSVLQHLNLSRCNKLTDVGLAHLTPLTALQHLDLSSCYN 511
Query: 336 ITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 393
+TD GLA LT LT L HL L ++TD+G +L+ L+ L + LTDAG+ H+
Sbjct: 512 LTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCKNLTDAGLAHLT 571
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTL 452
L++L L L+ LTD L ++ LT L L++ + +T AGL HL PL LR L L
Sbjct: 572 PLTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDLRYCQNLTDAGLAHLTPLTGLRHLDL 631
Query: 453 ESC-KVTANDIKRLQS 467
C ++T + R ++
Sbjct: 632 SQCWRLTKAGLARFKT 647
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 218/396 (55%), Gaps = 13/396 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL + LQ L C ++++ GL HL L+ L L+ +T G+
Sbjct: 262 LTDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTALQYLNLSEYKNLTDAGLAHLT 321
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L L L C + GL +L LM L+ L++ C +TD+ + L+ LT L+ L +
Sbjct: 322 PLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNL 381
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S C+K+TD+G+A+L L L L+L GC +T A L L+ L L +L+L+ CQ L+D G
Sbjct: 382 SRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLDLSGCQNLTDAG 441
Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNL 302
+ + L+ LNL + TD L HL L+ L+ LNL C + D GL +LT LT L
Sbjct: 442 LAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLNLSRCNKLTDVGLAHLTPLTAL 501
Query: 303 ESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR- 359
+ ++LS ++D L L L+SL+ L L ++TD GL L LTGL HL+L +
Sbjct: 502 QHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCKN 561
Query: 360 ITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+TD+G A+L L+ L + LTDAG+ H+ L++L L+L NLTD L ++
Sbjct: 562 LTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDLRYCQNLTDAGLAHLT 621
Query: 419 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 453
LTGL L++S R+T AGL K L SL LE
Sbjct: 622 PLTGLRHLDLSQCWRLTKAGLARFKTLA--ASLNLE 655
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 138/371 (37%), Positives = 205/371 (55%), Gaps = 12/371 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T++GL HL + LQ L+ + ++D GL HL L+ L L +T G+
Sbjct: 287 LTNAGLAHLTPLTALQYLNLSEYKNLTDAGLAHLTPLTALQHLGLSGCQNLTDAGLAHLT 346
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C + GL +L L L+ LN+ CN +TD+ + L+ LT L+ L +
Sbjct: 347 PLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDL 406
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C +TD+G+A+L L L L+L GC +T A L L+ L L +LNL C + +D+G
Sbjct: 407 SGCQNLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNG 466
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNL 302
+ + L+ LNL N++TD L HL LT L+ L+L SC + D GL +LT LT+L
Sbjct: 467 LAHLTPLSVLQHLNLSRCNKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSL 526
Query: 303 ESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR- 359
+ + L S ++D L L L+ L+ LNL + + +TD GLA LT LT L +L L R
Sbjct: 527 QHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCKNLTDAGLAHLTPLTALQYLYLNWCRK 586
Query: 360 ITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+TD+G A+L + L+ L++ C LTDAG+ H+ L+ L L+LSQ LT L
Sbjct: 587 LTDAGLAHLTSLTALQHLDLRYCQN-LTDAGLAHLTPLTGLRHLDLSQCWRLTKAGLARF 645
Query: 418 SGLTGLVSLNV 428
L ++L +
Sbjct: 646 KTLAASLNLEI 656
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 199/358 (55%), Gaps = 11/358 (3%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L +Y + D + + ++L + LSG ++TD+GL HL LQ LD +
Sbjct: 300 ALQYLNLSEYKNLTDAGLAHLTPL-TALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSG 358
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL HL L+ L L+ R N +T G+ L L LDL C + GL
Sbjct: 359 CQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLA 418
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTL 208
+L L L+ L++ C +TD+ + L+ LT L+ L + +C K TD+G+A+L L L
Sbjct: 419 HLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQH 478
Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEIT 265
LNL C +T L L+ L +L +L+L+ C L+D G + + SL+ L L +++T
Sbjct: 479 LNLSRCNKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLT 538
Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGL 323
D LVHLK LT L+ LNL +C + D GL +LT LT L+ + L++ ++D L L L
Sbjct: 539 DAGLVHLKLLTGLQHLNLSNCKNLTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSL 598
Query: 324 SSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI 379
++L+ L+L Q +TD GLA LT LTGL HLDL R+T +G A + +LEI
Sbjct: 599 TALQHLDLRYCQNLTDAGLAHLTPLTGLRHLDLSQCWRLTKAGLARFKTLAASLNLEI 656
>gi|168698161|ref|ZP_02730438.1| hypothetical protein GobsU_01477 [Gemmata obscuriglobus UQM 2246]
Length = 417
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 201/352 (57%), Gaps = 4/352 (1%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+K AGL L L+L G+ L G L +LN+ + +TD +K L+G
Sbjct: 64 AGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTT-LTDVGVKELAGFKA 122
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-L 240
L +L+++ + VTD+G+ L GL+ LT L L G VT A + L++L L L L + +
Sbjct: 123 LTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLGLFAAKAV 182
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
+D G ++ + + +L L LG ++TD + L GL L +L+L G+ D G+ L GL
Sbjct: 183 TDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGVKELAGLK 242
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
L ++L TG++D +++LAGL +L +LNL ++TD G+ L L L+ L+L G ++
Sbjct: 243 ALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLNLGGTKV 302
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD+G L FK L +L++ LTDAGVK + L++LTLL+LS LTD ++ ++ L
Sbjct: 303 TDTGLKELAGFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLS-GTTLTDAGVKELAPL 361
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
T L L + + +T AGL+ L LKNL +L L + KVT +K L + LP
Sbjct: 362 TNLTMLYLGETGVTDAGLKELAGLKNLTALFLFNTKVTDAGVKELTAA-LPK 412
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 184/335 (54%), Gaps = 2/335 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++L + VTD G+ L L +L+ +F ++D G++ L G LT+L +
Sbjct: 74 ALTTLNLGATKVTDVGVKELAGFKALTTLNLSFT-TLTDVGVKELAGFKALTTLELNYTD 132
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+K AGL L L L G+ L L +L L + +TD+ +K L+
Sbjct: 133 -VTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLGLFAAKAVTDAGVKELA 191
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
GL L +L++ +KVTD+G+ L GL+ LT L+L VT A + L+ L +L L+L
Sbjct: 192 GLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGVKELAGLKALSVLDLGN 251
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++D G ++ + + +L LNLG ++TD + L GL L +LNL + D GL L
Sbjct: 252 TGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLNLGGTKVTDTGLKELA 311
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
G L +++LSFT ++D +++LAGL++L L+L +TD G+ L LT LT L L
Sbjct: 312 GFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTDAGVKELAPLTNLTMLYLGE 371
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+TD+G L KNL +L + +TDAGVK +
Sbjct: 372 TGVTDAGLKELAGLKNLTALFLFNTKVTDAGVKEL 406
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 179/349 (51%), Gaps = 28/349 (8%)
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
F + +SD G++ L GL LT+L+ +T G+K AG L L+L T G
Sbjct: 55 FLYACPLSDAGVKELAGLKALTTLNLGATK-VTDVGVKELAGFKALTTLNLSFTTLTDVG 113
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+ L G L +L + + + +TD+ +K L+GL L +L + +KVTD+G+ L L++L+
Sbjct: 114 VKELAGFKALTTLELNYTD-VTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELS 172
Query: 208 LLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+L L VT A + L+ L +L L L +++D G ++ + + +L L+L + +TD
Sbjct: 173 VLGLFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTD 232
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ L GL L L+L + G+ D G+ L GL L ++NL ++D +++LAGL +L
Sbjct: 233 AGVKELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKAL 292
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLF------------------------GARITD 362
+LNL ++TDTGL L LT LDL G +TD
Sbjct: 293 STLNLGGTKVTDTGLKELAGFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTD 352
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
+G L NL L + G+TDAG+K + L +LT L L N +TD
Sbjct: 353 AGVKELAPLTNLTMLYLGETGVTDAGLKELAGLKNLTALFLF-NTKVTD 400
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 144/257 (56%), Gaps = 2/257 (0%)
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L CP++ A + L+ L +L LNL +++D G ++ + +L LNL F +TD +
Sbjct: 56 LYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDVGVK 115
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L G L +L L+ + D G+ L GL L ++ L T ++D +++LA L L L
Sbjct: 116 ELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLG 175
Query: 331 L-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
L A+ +TD G+ L L LT L+L ++TD+G L K L +L++ G+TDAGV
Sbjct: 176 LFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGV 235
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
K + L +L++L+L N +TD ++ ++GL L +LN+ +++T AG++ L LK L +
Sbjct: 236 KELAGLKALSVLDLG-NTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALST 294
Query: 450 LTLESCKVTANDIKRLQ 466
L L KVT +K L
Sbjct: 295 LNLGGTKVTDTGLKELA 311
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 160/289 (55%), Gaps = 2/289 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++L+ +DVTD+G+ L L +L +++D G++ L L L+ L
Sbjct: 122 ALTTLELNYTDVTDAGVKELAGLKALTTLGLG-GTKVTDAGVKELASLKELSVLGLFAAK 180
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
A+T G+K AGL L L+L G+ L GL L +L++ + +TD+ +K L+
Sbjct: 181 AVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTG-VTDAGVKELA 239
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
GL L L + + VTD+G+ L GL+ LT LNL G VT A + L+ L +L LNL
Sbjct: 240 GLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLNLGG 299
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+++D G ++ + +L L+L F +TD + L GLT L L+L + D G+ L
Sbjct: 300 TKVTDTGLKELAGFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTDAGVKELA 359
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
LTNL + L TG++D L++LAGL +L +L L ++TD G+ LT+
Sbjct: 360 PLTNLTMLYLGETGVTDAGLKELAGLKNLTALFLFNTKVTDAGVKELTA 408
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 103/187 (55%)
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
S+ L +C + D G+ L GL L ++NL T ++D +++LAG +L +LNL +TD
Sbjct: 53 SVFLYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDV 112
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
G+ L LT L+L +TD+G L K L +L + G +TDAGVK + L L+
Sbjct: 113 GVKELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELS 172
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
+L L +TD ++ ++GL L +L + +++T AG++ L LK L +L L VT
Sbjct: 173 VLGLFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTD 232
Query: 460 NDIKRLQ 466
+K L
Sbjct: 233 AGVKELA 239
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L+ ++D+G L K L +L + +TD GVK + +LT LNLS LTD +
Sbjct: 56 LYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFT-TLTDVGV 114
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ ++G L +L ++ + +T AG++ L LK L +L L KVT +K L S
Sbjct: 115 KELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELAS 167
>gi|46447250|ref|YP_008615.1| hypothetical protein pc1616 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400891|emb|CAF24340.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 813
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 149/401 (37%), Positives = 212/401 (52%), Gaps = 16/401 (3%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL + LQ LD + C + D GL HL L+ L L + T G+ L
Sbjct: 368 DTGLAHLTSLTALQHLDLSECYLLKDTGLAHLSSLTALQYLDLSDSGNFTDAGLAHLTPL 427
Query: 131 INLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
++L LDL + + G GL +L L+ L L + C +TD+ + L+ L L+ L +S
Sbjct: 428 VSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSE 487
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR----CQ-LSD 242
C +TD G+ +L L L L+L+ C +T A L L+ L +L +L+L C L+D
Sbjct: 488 CKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTD 547
Query: 243 DGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLT 300
DG S + +LK L+L + E +TD L HL LT L L+L C + DEGL LT L
Sbjct: 548 DGLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLV 607
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-A 358
L+ ++L + I+D L LA LS+L+ L+L D R+I GLA LTSL L HLDL G
Sbjct: 608 ALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRINGYGLAHLTSLVNLEHLDLSGCY 667
Query: 359 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+ YL + NL+ L + GL G++ + L +L L+LS NLTD+ L +
Sbjct: 668 HLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLTDQGLAYL 727
Query: 418 SGLTG--LVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
+ L G L L++S +IT GL HL L L+ L L C
Sbjct: 728 TSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQHLNLSEC 768
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 227/426 (53%), Gaps = 18/426 (4%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L + + D + ++S ++L +DLS S + TD+GL HL +LQ LD +
Sbjct: 379 ALQHLDLSECYLLKDTGLAHLSSL-TALQYLDLSDSGNFTDAGLAHLTPLVSLQHLDLSK 437
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
++ GL HL L L L +T G+ L+ L LDL C + GLV
Sbjct: 438 SENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSECKNLTDDGLV 497
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-----CSKVTDSGIAYLKGLQ 204
+L L+ L+ L++K C +TD+ + L+ LT L+ L + C +TD G+A+L L
Sbjct: 498 HLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLT 557
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 262
L L+L +T A L L+ L +L +L+L+ C+ L+D+G + + +L+ L+L +
Sbjct: 558 ALKHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLVALQYLSLKGS 617
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKL 320
+ITDE L HL L+ L L+L+ C I GL +LT L NLE ++LS + L L
Sbjct: 618 DITDEGLEHLAHLSALRHLSLNDCRRINGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYL 677
Query: 321 AGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFK--NLRS 376
+ L +L+ LNL + + GL LT L L +LDL G +TD G AYL + +L+
Sbjct: 678 SSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLTDQGLAYLTSLVGLDLQH 737
Query: 377 LEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-IT 434
L++ G +TD G+ H+ L +L LNLS+ NLTD L + L L L + + IT
Sbjct: 738 LDLSGCKKITDTGLAHLTSLVTLQHLNLSECVNLTDTGLAHLVSLVNLQYLELRECKNIT 797
Query: 435 SAGLRH 440
AGL H
Sbjct: 798 DAGLAH 803
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 125/371 (33%), Positives = 188/371 (50%), Gaps = 26/371 (7%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L+ L N L ++ NN I +GL+N + +I N ++E LN
Sbjct: 282 LKELLNFARL-YQLNNLINYLEFTVVSGLLNNTS-HVNEFEKILNHFSN-----EIEGLN 334
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKV----TDSGIAYLKGLQKLTLLNLEGCPVT 217
+ + T++ L N K+L++ C K+ D+G+A+L L L L+L C +
Sbjct: 335 LSGKDFFTEAHFL---ALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQHLDLSECYLL 391
Query: 218 AAC-LDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKG 274
L LS+L +L YL+L+ +D G + + SL+ L+L +E +T + L HL
Sbjct: 392 KDTGLAHLSSLTALQYLDLSDSGNFTDAGLAHLTPLVSLQHLDLSKSENLTGDGLAHLTP 451
Query: 275 LTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 332
L L L L C + D GL +LT L L ++LS ++D L L+ L +L+ L+L
Sbjct: 452 LVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSECKNLTDDGLVHLSSLVALQYLSLK 511
Query: 333 -ARQITDTGLAALTSLTGLTHLDL---FG--ARITDSGAAYLRNFKNLRSLEICG-GGLT 385
+TD GLA LT LT L HLDL G +TD G A+L + L+ L++ LT
Sbjct: 512 LCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLTALKHLDLSWRENLT 571
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
DAG+ H+ L++L L+LS NLTD+ L ++ L L L++ S IT GL HL L
Sbjct: 572 DAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLS 631
Query: 446 NLRSLTLESCK 456
LR L+L C+
Sbjct: 632 ALRHLSLNDCR 642
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 338 DTGLAALTSLTGLTHLDLFGARI-TDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDL 395
DTGLA LTSLT L HLDL + D+G A+L + L+ L++ G TDAG+ H+ L
Sbjct: 368 DTGLAHLTSLTALQHLDLSECYLLKDTGLAHLSSLTALQYLDLSDSGNFTDAGLAHLTPL 427
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLES 454
SL L+LS++ NLT L ++ L L L +S+ R +T AGL HL PL LR L L
Sbjct: 428 VSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSE 487
Query: 455 CKVTAND 461
CK +D
Sbjct: 488 CKNLTDD 494
>gi|149174278|ref|ZP_01852905.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
gi|148846823|gb|EDL61159.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
Length = 1815
Score = 174 bits (442), Expect = 8e-41, Method: Composition-based stats.
Identities = 147/475 (30%), Positives = 223/475 (46%), Gaps = 62/475 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S SL ++ + + +++SG+ LKD L+ L F QI GL HL+ L NL L
Sbjct: 1328 SNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFT-NTQIDGVGLGHLKDLKNLKILGL 1386
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ +I+ ++ GL L+ L L C GL LK L L+ L++ ITD +
Sbjct: 1387 -ESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLD-STPITDEGL 1444
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLN---------------------- 210
K LSGL L++L++ +KVT GIA L K L +++
Sbjct: 1445 KHLSGLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDSPMTDREIAEW 1504
Query: 211 -----------------LEGCPVTAACLDSLS---------------ALGSLFYLNLNRC 238
+E P +S+S L +L YL L
Sbjct: 1505 VIGMGGGIGIGFKLNYKIEELPTEPVIFNSVSLKNASFEDHDLQRLAKLKTLKYLFLEST 1564
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+SD G + ++ +L+ + L + ITDE L+HL+GL NL L L I EGL +L
Sbjct: 1565 SISDTGLQYLRQMQNLEEIFLDYTNITDEGLLHLRGLQNLRVLRLSKTKITGEGLGHLKD 1624
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHL-DLF 356
L L +I+++ I++ ++ + L L SLN+ Q+ DTGL + LT L L
Sbjct: 1625 LPRLHTIDVNRAAITNSGMKAMGDLKQLTSLNISFNSQVDDTGLGYIEGLTKLEKLFAHL 1684
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+ITD G +L+ K L SL + G+T G++ + SL+ L+L+ NC +TD LE
Sbjct: 1685 VPKITDEGLKHLQGMKQLESLTLSSTGITTTGLEQLTKHESLSKLDLT-NCKITDSGLEH 1743
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 471
+ L L L + + ++ AGL+HL LK L +L L KVT+ I LQ + LP
Sbjct: 1744 LQDLKNLRDLRLDLTPVSDAGLQHLYSLKKLENLDLRETKVTSQGIADLQ-KALP 1797
Score = 162 bits (411), Expect = 3e-37, Method: Composition-based stats.
Identities = 152/478 (31%), Positives = 228/478 (47%), Gaps = 66/478 (13%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++L + V+D+GL +LKD N SL QI+D G +L + +LT+L + +
Sbjct: 1285 TLPKLNLENTLVSDTGLQYLKDIPLNYISL---IGTQITDKGFGYLSNMPSLTTL-YVGS 1340
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AI+ G++ + L KL T+I G GL +LK L L+ L ++ I+D D++
Sbjct: 1341 TAISNSGVEQLKDMKQLEKLSFTN-TQIDGVGLGHLKDLKNLKILGLE-STSISDVDLQH 1398
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L GL L L +S K+ DSG+AYLK L+ L +L+L+ P+T L LS L L L L
Sbjct: 1399 LHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPITDEGLKHLSGLKMLQTLEL 1458
Query: 236 NRCQLSDDG----------CEKFS------------------------------------ 249
+ +++ G C+ S
Sbjct: 1459 QKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDSPMTDREIAEWVIGMGGGIGIGFKL 1518
Query: 250 --KIGSLKVLNLGFNEIT-------DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
KI L + FN ++ D L L L L+ L L+S I D GL L +
Sbjct: 1519 NYKIEELPTEPVIFNSVSLKNASFEDHDLQRLAKLKTLKYLFLESTSISDTGLQYLRQMQ 1578
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
NLE I L +T I+D L L GL +L+ L L +IT GL L L L +D+ A I
Sbjct: 1579 NLEEIFLDYTNITDEGLLHLRGLQNLRVLRLSKTKITGEGLGHLKDLPRLHTIDVNRAAI 1638
Query: 361 TDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
T+SG + + K L SL I + D G+ +I+ L+ L L +TD+ L+ + G
Sbjct: 1639 TNSGMKAMGDLKQLTSLNISFNSQVDDTGLGYIEGLTKLEKLFAHLVPKITDEGLKHLQG 1698
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
+ L SL +S++ IT+ GL L ++L L L +CK+T + ++ LQ DL NL R
Sbjct: 1699 MKQLESLTLSSTGITTTGLEQLTKHESLSKLDLTNCKITDSGLEHLQ--DLKNLRDLR 1754
Score = 108 bits (271), Expect = 5e-21, Method: Composition-based stats.
Identities = 99/369 (26%), Positives = 169/369 (45%), Gaps = 36/369 (9%)
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LDL+ + L L GL L LN++ ++D+ ++ L + L + + +++TD
Sbjct: 1265 LDLKGTSVKDDDLKRLAGLKTLPKLNLE-NTLVSDTGLQYLKDIP-LNYISLIGTQITDK 1322
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G YL + LT L + ++ + ++ L + L L+ Q+ G + +LK
Sbjct: 1323 GFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKNLK 1382
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
+L L I+D L HL GL L L L +C I D GL L L NL+ ++L T I+D
Sbjct: 1383 ILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPITDE 1442
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGAR--------ITDSGAA 366
L+ L+GL L++L L ++T G+A+L +L + F + +TD A
Sbjct: 1443 GLKHLSGLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDSPMTDREIA 1502
Query: 367 -------------YLRNFK---------NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
+ N+K S+ + D ++ + L +L L L
Sbjct: 1503 EWVIGMGGGIGIGFKLNYKIEELPTEPVIFNSVSLKNASFEDHDLQRLAKLKTLKYLFL- 1561
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
++ +++D L+ + + L + + + IT GL HL+ L+NLR L L K+T +
Sbjct: 1562 ESTSISDTGLQYLRQMQNLEEIFLDYTNITDEGLLHLRGLQNLRVLRLSKTKITGEGLGH 1621
Query: 465 LQSRDLPNL 473
L +DLP L
Sbjct: 1622 L--KDLPRL 1628
Score = 102 bits (255), Expect = 4e-19, Method: Composition-based stats.
Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 3/219 (1%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
+ L+L + D+ L L GL L LNL++ + D GL L + L I+L T I+
Sbjct: 1262 INFLDLKGTSVKDDDLKRLAGLKTLPKLNLENTLVSDTGLQYLKDIP-LNYISLIGTQIT 1320
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
D L+ + SL +L + + I+++G+ L + L L +I G +L++ KN
Sbjct: 1321 DKGFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKN 1380
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L+ L + ++D ++H+ L L +L LS NC + D L + L L L++ ++ I
Sbjct: 1381 LKILGLESTSISDVDLQHLHGLKILIVLGLS-NCKIADSGLAYLKDLKNLKVLSLDSTPI 1439
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
T GL+HL LK L++L L+ KVT I LQ + LPN
Sbjct: 1440 TDEGLKHLSGLKMLQTLELQKTKVTPQGIASLQ-KALPN 1477
Score = 93.6 bits (231), Expect = 2e-16, Method: Composition-based stats.
Identities = 66/200 (33%), Positives = 101/200 (50%), Gaps = 1/200 (0%)
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
+ L+L+G V L L+ L +L LNL +SD G + I L ++L +IT
Sbjct: 1262 INFLDLKGTSVKDDDLKRLAGLKTLPKLNLENTLVSDTGLQYLKDI-PLNYISLIGTQIT 1320
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
D+ +L + +L +L + S I + G+ L + LE ++ + T I L L L +
Sbjct: 1321 DKGFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKN 1380
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
LK L L++ I+D L L L L L L +I DSG AYL++ KNL+ L + +T
Sbjct: 1381 LKILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPIT 1440
Query: 386 DAGVKHIKDLSSLTLLNLSQ 405
D G+KH+ L L L L +
Sbjct: 1441 DEGLKHLSGLKMLQTLELQK 1460
>gi|301098037|ref|XP_002898112.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262105473|gb|EEY63525.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 648
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 155/510 (30%), Positives = 239/510 (46%), Gaps = 37/510 (7%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQG-SSL 59
+LP +++ + L L + +A L + L + V D W D I + S+
Sbjct: 141 VLPPELALSVLQWLKQHYVLDKPQFQALTPLLLLEWNLADHQDVEDSWFDDIPEKTLESV 200
Query: 60 LSVDLSG----SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
S+D+SG + H+ L F C +S +E L+ + LT+L+
Sbjct: 201 KSIDVSGCIHLQQLGSEWGRHVNRLPELLVASFQGCTGLSKETIEMLKLSTKLTTLNLSG 260
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ + +K+ L +L L L C R+ G+ L L KLE L + C +TD
Sbjct: 261 CANVDDKCVKSLRQLEHLKSLQLVGCRRLTDKGVKRLFKLTKLEKLRLGRCRKLTDDAFG 320
Query: 175 P-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
+ L+ L +S ++++ + ++ ++ L +L + GC ++ + SL+ L +L Y
Sbjct: 321 GFVDSFPKLRELDVSNCRLSERAMQHIGQVKSLEVLVIRGCQDISDVGMASLAELTNLKY 380
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+ C ++++ L+VL LG+ + L+ LT L+ L L C I G
Sbjct: 381 FDARHCGKIHSIPTEWTQ---LEVLLLGYTAFAESDAAVLQYLTKLQELELRKCRIMKRG 437
Query: 293 L-------------VNLTGLT------------NLESINLSFTGISDGSLRKLAGLSSLK 327
V T LT NL+++N+S T ISD L L L+
Sbjct: 438 FQFISRLKHLERLEVAETALTDSRLLEICNNAINLKALNVSNTEISDSGTTGLTKLKELR 497
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L LD IT+ LA L+ L L LDLFGA ITD+G +L L+ L ICGG + D
Sbjct: 498 ILGLDTSGITNRALANLSFLPQLERLDLFGANITDNGLMHLIPLHKLQELAICGGNIGDR 557
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
GV I L+SLT LNLSQN N+ K+L + LT L LN+SN+ I++ LRHL PLK L
Sbjct: 558 GVGLISKLTSLTSLNLSQNRNIRTKSLFYLRSLTSLRCLNLSNTGISALSLRHLSPLKEL 617
Query: 448 RSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
+SL++ C ++ I L+ LP L R
Sbjct: 618 QSLSVYGCSLSQGHIDVLRE-ILPELKCLR 646
>gi|149174587|ref|ZP_01853213.1| hypothetical protein PM8797T_09949 [Planctomyces maris DSM 8797]
gi|148846697|gb|EDL61034.1| hypothetical protein PM8797T_09949 [Planctomyces maris DSM 8797]
Length = 540
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 219/410 (53%), Gaps = 11/410 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G+ +TDS L ++ NLQ L+ N ISD GL HLRGLS L L + G
Sbjct: 140 LRGTTITDSDLKYVGALKNLQKLNLN-NTAISDAGLAHLRGLSELRVLELE-GTQLDGTG 197
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L +L +LDL+ N G ES N + I D+ +K + L +LK
Sbjct: 198 LVYLKHLNHLEELDLDNYNN------NFVGWNDGESEN-EPRPQIRDAGLKHIGKLKHLK 250
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L + ++++D G+A+L+ L+KL L ++ + L L +L L L+ ++SD
Sbjct: 251 KLSLFGAEISDVGLAHLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGSRVSDA 310
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
G +K+ L+ L+LG I+D L+HL+ LT+L+SL+L + D+GL++L+ L NLE
Sbjct: 311 GLVHLAKLQKLQSLDLGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSRLQNLE 370
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
S+ L T +S L L LS L+ L++ ++ D GL A+ L L L LF ITD
Sbjct: 371 SLYLRSTNLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLDSLGLFATPITDQ 430
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G +L NL+ L++ ++DAG+ H+ L+ L +L+L + +TD L + GL L
Sbjct: 431 GLVHLSGLTNLKKLDLQETSISDAGLVHLSHLAGLKVLDL-EGTRITDAGLIHLQGLNEL 489
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
L + + ++ AGL+HLK L L+ L E ++T I L+ + LP+L
Sbjct: 490 EQLELDKTAVSDAGLKHLKGLTKLQFLQYEETQITEAGINDLR-QSLPDL 538
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 136/436 (31%), Positives = 216/436 (49%), Gaps = 47/436 (10%)
Query: 50 DVIA-SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
D IA SQ +L S+ L + + + G H+ NL+ L I+D L+++ L NL
Sbjct: 101 DFIAISQLKNLKSIHLLITTIEEGGRKHITGLQNLELLSLR-GTTITDSDLKYVGALKNL 159
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLN------ 161
L+ N AI+ G+ GL L L+LE T++ G GLV LK L LE L+
Sbjct: 160 QKLNLN-NTAISDAGLAHLRGLSELRVLELE-GTQLDGTGLVYLKHLNHLEELDLDNYNN 217
Query: 162 --IKWCNCITDSDMKPLSGLTNLKSLQISC---------SKVTDSGIAYLKGLQKLTLLN 210
+ W + ++++ +P LK + ++++D G+A+L+ L+KL L
Sbjct: 218 NFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSLFGAEISDVGLAHLQDLKKLESLE 277
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
++ + L L +L L L+ ++SD G +K+ L+ L+LG I+D L+
Sbjct: 278 FARENISDKGVAHLKGLLNLTSLRLDGSRVSDAGLVHLAKLQKLQSLDLGNTSISDTGLI 337
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
HL+ LT+L+SL+L + D+GL++L+ L NLES+ L T +S L L LS L+ L+
Sbjct: 338 HLQELTSLKSLDLSDTAVSDDGLIHLSRLQNLESLYLRSTNLSGVGLSSLKNLSMLQYLD 397
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ ++ D GL A+ L L L LF ITD G +L NL+ L++ ++DAG+
Sbjct: 398 MGYSKMNDQGLIAVAELGSLDSLGLFATPITDQGLVHLSGLTNLKKLDLQETSISDAGLV 457
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
H+ S L GL L++ +RIT AGL HL+ L L L
Sbjct: 458 HL-------------------------SHLAGLKVLDLEGTRITDAGLIHLQGLNELEQL 492
Query: 451 TLESCKVTANDIKRLQ 466
L+ V+ +K L+
Sbjct: 493 ELDKTAVSDAGLKHLK 508
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 199/410 (48%), Gaps = 43/410 (10%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G E G L F ++ + A + L NL + L T GG ++ GL L
Sbjct: 77 GEEKFLGFMTAVELDFEFGE-LSEEDFIAISQLKNLKSIHLLITTIEEGGRKHITGLQNL 135
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
E L+++ ITDSD+K + L NL+ L ++ + ++D+G+A+L+GL +L +L LEG +
Sbjct: 136 ELLSLR-GTTITDSDLKYVGALKNLQKLNLNNTAISDAGLAHLRGLSELRVLELEGTQLD 194
Query: 218 AACLDSLSALGSLFYLNLN------------------RCQLSDDGCEKFSKIGSLKVLNL 259
L L L L L+L+ R Q+ D G + K+ LK L+L
Sbjct: 195 GTGLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSL 254
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
EI+D L HL+ L LESL I D+G+ +L GL NL S+ L + +SD L
Sbjct: 255 FGAEISDVGLAHLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGSRVSDAGLVH 314
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
LA L L+SL+L I+DTGL L LT L LDL ++D G +L +NL SL +
Sbjct: 315 LAKLQKLQSLDLGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSRLQNLESLYL 374
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQN-----------------------CNLTDKTLEL 416
L+ G+ +K+LS L L++ + +TD+ L
Sbjct: 375 RSTNLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLDSLGLFATPITDQGLVH 434
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+SGLT L L++ + I+ AGL HL L L+ L LE ++T + LQ
Sbjct: 435 LSGLTNLKKLDLQETSISDAGLVHLSHLAGLKVLDLEGTRITDAGLIHLQ 484
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 129/266 (48%), Gaps = 43/266 (16%)
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
G EKF + L+ F E+++E + + L NL+S++L I + G ++TGL NLE
Sbjct: 77 GEEKFLGFMTAVELDFEFGELSEEDFIAISQLKNLKSIHLLITTIEEGGRKHITGLQNLE 136
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
++L T I+D L+ + L +L+ LNL+ I+D GLA L L+ L L+L G ++ +
Sbjct: 137 LLSLRGTTITDSDLKYVGALKNLQKLNLNNTAISDAGLAHLRGLSELRVLELEGTQLDGT 196
Query: 364 GAAYLRNFKNLRSLEI------------------------------------------CG 381
G YL++ +L L++ G
Sbjct: 197 GLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSLFG 256
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
++D G+ H++DL L L ++ N++DK + + GL L SL + SR++ AGL HL
Sbjct: 257 AEISDVGLAHLQDLKKLESLEFARE-NISDKGVAHLKGLLNLTSLRLDGSRVSDAGLVHL 315
Query: 442 KPLKNLRSLTLESCKVTANDIKRLQS 467
L+ L+SL L + ++ + LQ
Sbjct: 316 AKLQKLQSLDLGNTSISDTGLIHLQE 341
>gi|46446906|ref|YP_008271.1| hypothetical protein pc1272 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400547|emb|CAF23996.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 618
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 144/397 (36%), Positives = 204/397 (51%), Gaps = 35/397 (8%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL+ L C ++D GL +L L+ L
Sbjct: 236 NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQ---------------- 279
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+L C + GL +L L+ L+ LN+ C +TD+ + L+ LT L L
Sbjct: 280 ---------HLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYL 330
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSD 242
+S C +TD+G+A+L L LT LNL C +T A L L+ L +L YLNL+ C L+D
Sbjct: 331 NLSHCRNITDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTD 390
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLT 300
G + + +L LNL + TD L HL L L+ L+L C I D GL +LT L
Sbjct: 391 AGLAHLTPLVTLTHLNLSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLV 450
Query: 301 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA 358
L +NLS+ +D L LA L +L+ L+L+ Q+TD GLA L L LTHLDL
Sbjct: 451 ALTHLNLSWCYNFTDAGLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSC 510
Query: 359 -RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+TD+G +L L+ L++ LTDAG+ H+ L +LT LNLS + TD L
Sbjct: 511 NHLTDAGLPHLTPLVALQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSCNHFTDAGLTH 570
Query: 417 ISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 452
++ L L LN++ T AGL H K L +L L
Sbjct: 571 LTPLLALQDLNLNYCENFTDAGLAHFKSLATFPNLNL 607
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 172/334 (51%), Gaps = 34/334 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK L + C +TD+G+AYL L L LNL GC
Sbjct: 227 EIEELNFSKNASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQHLNLAGC 286
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQ--------------------------LSDDGCEKF 248
A L L+ L +L +LNL+ C+ ++D G
Sbjct: 287 KFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYLNLSHCRNITDAGLAHL 346
Query: 249 SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESIN 306
+ + +L LNL N +TD L HL LT L LNL SC + D GL +LT L L +N
Sbjct: 347 TPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLVTLTHLN 406
Query: 307 LSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDS 363
LS+ +D L L L +L+ L+L R ITD GLA LT L LTHL+L + TD+
Sbjct: 407 LSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSWCYNFTDA 466
Query: 364 GAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
G A+L L+ L++ G LTDAG+ H+ L +LT L+LS +LTD L ++ L
Sbjct: 467 GLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVA 526
Query: 423 LVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 455
L L++S R +T AGL HL PL L L L SC
Sbjct: 527 LQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSC 560
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 141/422 (33%), Positives = 210/422 (49%), Gaps = 39/422 (9%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLL 60
P +I + F++ + LT+ L A ++C L+ L L + + D + + + ++L
Sbjct: 224 FPNEIEELNFSK---NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYL-TPLTTLQ 279
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++L+G ++GL HL LQ L+ + C ++D GL HL L+ LT L+ IT
Sbjct: 280 HLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYLNLSHCRNIT 339
Query: 121 AQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
G+ L L L+L C + GL +L L L LN+ CN +TD+ + L+ L
Sbjct: 340 DAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPL 399
Query: 180 TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR 237
L L +S C TD+G+A+L L L L+L C +T A L L+ L +L +LNL+
Sbjct: 400 VTLTHLNLSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSW 459
Query: 238 C-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLV 294
C +D G + + +L+ L+L G ++TD L HL L L L+L SC + D GL
Sbjct: 460 CYNFTDAGLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLP 519
Query: 295 NLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTH 352
+LT L L+ ++LS+ ++D L LA L +L LNL + TD GL LT L L
Sbjct: 520 HLTPLVALQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSCNHFTDAGLTHLTPLLALQD 579
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL--SQNC-NL 409
L+L Y NF TDAG+ H K L++ LNL QNC NL
Sbjct: 580 LNL----------NYCENF-------------TDAGLAHFKSLATFPNLNLICYQNCINL 616
Query: 410 TD 411
D
Sbjct: 617 ED 618
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
LTDA + +K+ +L +L+L + NLTD L ++ LT L LN++ + +AGL H
Sbjct: 236 NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQHLNLAGCKFANAGLAH 295
Query: 441 LKPLKNLRSLTLESCK 456
L PL L+ L L C+
Sbjct: 296 LTPLVALQHLNLSHCR 311
>gi|46446912|ref|YP_008277.1| hypothetical protein pc1278 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400553|emb|CAF24002.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 731
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 138/400 (34%), Positives = 213/400 (53%), Gaps = 32/400 (8%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL++L C +++D GL +L L +L L+ +T G+
Sbjct: 332 NASLTDAHLLALKNCKNLKALHLQECYKLTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLA 391
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L+ L L+L C ++ + GL++L+ LM L+ L++ C +TD+ + L+ L L+
Sbjct: 392 HLTPLVALRHLNLMGCNKLTNAGLMHLRPLMALQHLDLSCCRNLTDAGLAHLAPLVALQH 451
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSD 242
L +S C+ +T +G+A+LK L L LNL C +T A L L+ L +L +L+L+ C+
Sbjct: 452 LCLSECTNLTGAGLAHLKPLVNLQHLNLNSCYKLTDAGLAHLTPLMALQHLDLSCCR--- 508
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTN 301
+TD L HL+ L L+ L+L+ C D GL +LT L
Sbjct: 509 --------------------NLTDAGLAHLRPLVALQHLDLNCCKNFTDAGLTHLTPLVA 548
Query: 302 LESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-A 358
L+ +NLS ++D L L L +L LNL TD GLA L L L HL+L
Sbjct: 549 LQHLNLSCCRNLTDAGLAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVALQHLNLGDCY 608
Query: 359 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
R+T++G +L L+ L++ LTDAG+ H+ L +LT L+LS+ LTD L +
Sbjct: 609 RLTNAGLEHLTPLVALQHLDLSECEKLTDAGLTHLVPLVALTHLDLSECDKLTDAGLAHL 668
Query: 418 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
+ L L LN++ ++T AGL HL PL L+ L L CK
Sbjct: 669 TPLEALQHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYCK 708
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 132/383 (34%), Positives = 189/383 (49%), Gaps = 32/383 (8%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL++L +LQ L+ CI+++D GL HL L L L+ N +T G+
Sbjct: 360 LTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLAHLTPLVALRHLNLMGCNKLTNAGLMHLR 419
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C + GL +L L+ L+ L + C +T + + L L NL+ L +
Sbjct: 420 PLMALQHLDLSCCRNLTDAGLAHLAPLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLNL 479
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
SC K+TD+G+A+L L L L+L C +T A L L L +L +L+LN C+
Sbjct: 480 NSCYKLTDAGLAHLTPLMALQHLDLSCCRNLTDAGLAHLRPLVALQHLDLNCCK------ 533
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLES 304
TD L HL L L+ LNL C + D GL L L L
Sbjct: 534 -----------------NFTDAGLTHLTPLVALQHLNLSCCRNLTDAGLAYLMPLVALSH 576
Query: 305 INLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARIT 361
+NL+ +D L LA L +L+ LNL D ++T+ GL LT L L HLDL ++T
Sbjct: 577 LNLAGCHNFTDAGLAHLAPLVALQHLNLGDCYRLTNAGLEHLTPLVALQHLDLSECEKLT 636
Query: 362 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
D+G +L L L++ LTDAG+ H+ L +L LNL+ LTD L ++ L
Sbjct: 637 DAGLTHLVPLVALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHLTPL 696
Query: 421 TGLVSLNVSNSR-ITSAGLRHLK 442
L L + + T GL H K
Sbjct: 697 LALQDLYLGYCKNFTEVGLAHFK 719
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 167/311 (53%), Gaps = 10/311 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK+L + C K+TD+G+ YL L L LNL C
Sbjct: 323 EIERLNFSKNASLTDAHLLALKNCKNLKALHLQECYKLTDTGLVYLAPLVSLQYLNLFDC 382
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
+T A L L+ L +L +LNL C +L++ G + +L+ L+L +TD L H
Sbjct: 383 IKLTDAGLAHLTPLVALRHLNLMGCNKLTNAGLMHLRPLMALQHLDLSCCRNLTDAGLAH 442
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSL 329
L L L+ L L C + GL +L L NL+ +NL S ++D L L L +L+ L
Sbjct: 443 LAPLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLNLNSCYKLTDAGLAHLTPLMALQHL 502
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI-CGGGLTD 386
+L R +TD GLA L L L HLDL + TD+G +L L+ L + C LTD
Sbjct: 503 DLSCCRNLTDAGLAHLRPLVALQHLDLNCCKNFTDAGLTHLTPLVALQHLNLSCCRNLTD 562
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLK 445
AG+ ++ L +L+ LNL+ N TD L ++ L L LN+ + R+T+AGL HL PL
Sbjct: 563 AGLAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVALQHLNLGDCYRLTNAGLEHLTPLV 622
Query: 446 NLRSLTLESCK 456
L+ L L C+
Sbjct: 623 ALQHLDLSECE 633
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 183/345 (53%), Gaps = 37/345 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T++GL+HL+ LQ LD + C ++D GL HL A
Sbjct: 410 LTNAGLMHLRPLMALQHLDLSCCRNLTDAGLAHL-------------------------A 444
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L L L CT + G GL +LK L+ L+ LN+ C +TD+ + L+ L L+ L +
Sbjct: 445 PLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLNLNSCYKLTDAGLAHLTPLMALQHLDL 504
Query: 188 SCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
SC + +TD+G+A+L+ L L L+L C T A L L+ L +L +LNL+ C+ L+D G
Sbjct: 505 SCCRNLTDAGLAHLRPLVALQHLDLNCCKNFTDAGLTHLTPLVALQHLNLSCCRNLTDAG 564
Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNL 302
+ +L LNL G + TD L HL L L+ LNL C + + GL +LT L L
Sbjct: 565 LAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVALQHLNLGDCYRLTNAGLEHLTPLVAL 624
Query: 303 ESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGAR 359
+ ++LS ++D L L L +L L+L + ++TD GLA LT L L HL+L + +
Sbjct: 625 QHLDLSECEKLTDAGLTHLVPLVALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCDK 684
Query: 360 ITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNL 403
+TD+G A+L L+ L + T+ G+ H K SS+ L+L
Sbjct: 685 LTDAGLAHLTPLLALQDLYLGYCKNFTEVGLAHFK--SSVAPLHL 727
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 58 SLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS D +TD+GL HL LQ L+ N+C +++D GL HL L L L
Sbjct: 648 ALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYC 707
Query: 117 NAITAQGMKAFAGLINLVKLDLER 140
T G+ F + + L + R
Sbjct: 708 KNFTEVGLAHFKSSVAPLHLKIIR 731
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLR 439
LTDA + +K+ +L L+L + LTD L ++ L L LN+ + ++T AGL
Sbjct: 332 NASLTDAHLLALKNCKNLKALHLQECYKLTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLA 391
Query: 440 HLKPLKNLRSLTLESCKVTAN 460
HL PL LR L L C N
Sbjct: 392 HLTPLVALRHLNLMGCNKLTN 412
>gi|414586495|tpg|DAA37066.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
Length = 115
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 99/112 (88%)
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
R FKN++SLE+CGG +TDAGVK+IKDL +LTLLNLSQN LTDKTLELISGLT LVSLN
Sbjct: 4 FRFFKNIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLN 63
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
VSNSR++++GL HLKPL+NLRSL+LESC+VTA+++ +L+ LPNL+S RPE
Sbjct: 64 VSNSRVSNSGLHHLKPLQNLRSLSLESCRVTASEMDKLRLVALPNLISVRPE 115
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G+ N+K L L LN+ +TD ++ +SGLT L SL +S S+V++SG+ +LK LQ
Sbjct: 23 AGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKPLQN 82
Query: 206 LTLLNLEGCPVTAACLDSL 224
L L+LE C VTA+ +D L
Sbjct: 83 LRSLSLESCRVTASEMDKL 101
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 27/128 (21%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ 239
N++SL++ +TD+G+ +K L+ LTLLNL + +T L+ +S L +L LN++ +
Sbjct: 9 NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL--VNLT 297
+S+ G L HLK L NL SL+L+SC + + + L
Sbjct: 69 VSNSG------------------------LHHLKPLQNLRSLSLESCRVTASEMDKLRLV 104
Query: 298 GLTNLESI 305
L NL S+
Sbjct: 105 ALPNLISV 112
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 283 LDSCG--IGDEGLVNLTGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDT 339
L+ CG I D G+ N+ L L +NLS G ++D +L ++GL++L SLN+ +++++
Sbjct: 13 LEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNS 72
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLR 369
GL L L L L L R+T S LR
Sbjct: 73 GLHHLKPLQNLRSLSLESCRVTASEMDKLR 102
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
N+QSL+ + I+D G+++++ L LT L+ +N +T + ++ +GL LV L++
Sbjct: 9 NIQSLEVCGGL-ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNS 67
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS--GLTNLKSLQ 186
+ GL +LK L L SL+++ C +T S+M L L NL S++
Sbjct: 68 RVSNSGLHHLKPLQNLRSLSLESCR-VTASEMDKLRLVALPNLISVR 113
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGAR 359
N++S+ + I+D ++ + L +L LNL ++TD L ++ LT L L++ +R
Sbjct: 9 NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68
Query: 360 ITDSGAAYLRNFKNLRSLEI 379
+++SG +L+ +NLRSL +
Sbjct: 69 VSNSGLHHLKPLQNLRSLSL 88
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 20 LTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+ ++ +D AL L L Q + DK +++I S ++L+S+++S S V++SGL HLK
Sbjct: 20 ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELI-SGLTALVSLNVSNSRVSNSGLHHLK 78
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLR--GLSNLTSL 111
NL+SL C +++ ++ LR L NL S+
Sbjct: 79 PLQNLRSLSLESC-RVTASEMDKLRLVALPNLISV 112
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++D G + + +L +LNL N ++TD+ L + GLT L SLN+ + + + GL +L
Sbjct: 20 ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKP 79
Query: 299 LTNLESINLSFTGISDGSLRKL 320
L NL S++L ++ + KL
Sbjct: 80 LQNLRSLSLESCRVTASEMDKL 101
>gi|283780172|ref|YP_003370927.1| hypothetical protein Psta_2397 [Pirellula staleyi DSM 6068]
gi|283438625|gb|ADB17067.1| leucine-rich repeat cysteine-containing subtype [Pirellula staleyi
DSM 6068]
Length = 443
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 172/313 (54%), Gaps = 4/313 (1%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD+GL +L L+ L ++D G+EHL L L + +R + +T++G ++ A
Sbjct: 107 VTDAGLANLDGHPTLRILVLELS-SVTDAGMEHLTKLPALEDIQLKRCD-LTSKGYESLA 164
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ L ++ + L +K + +LE L+++ CN +T++ + PL+G+T LKSL+I
Sbjct: 165 KIKTLRRIRAPQTNFNDDCLAAIKDMSQLELLDLQDCNQVTEAGLAPLAGMTKLKSLRIY 224
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEK 247
+TD+ + Y+K + L L+LE V + + L L L L ++DD +
Sbjct: 225 GPTITDTVMGYIKDCKNLASLSLEQSAVGVDGMKVIGGLSKLKELKLYGASNVTDDALAQ 284
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLTNLESIN 306
+ + L++L L T + +VHL G++ L+ L+L ++ I + GL L LTNLE IN
Sbjct: 285 IAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLSETANIDNAGLAALAPLTNLEEIN 344
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
L +T + D L LAG++ LK LNLD Q+TD GL L L+ L L + R+TD+G A
Sbjct: 345 LWYTFVDDAGLAPLAGMTKLKRLNLDKCQVTDAGLVHLKGLSNLEFLHIGSTRVTDTGLA 404
Query: 367 YLRNFKNLRSLEI 379
L KNL+ L I
Sbjct: 405 ELEGLKNLKHLVI 417
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 156/292 (53%), Gaps = 2/292 (0%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+D ++K L GL +L L+ + VTD+G+A L G L +L LE VT A ++ L+ L
Sbjct: 84 SDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSSVTDAGMEHLTKLP 143
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG- 287
+L + L RC L+ G E +KI +L+ + D+CL +K ++ LE L+L C
Sbjct: 144 ALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQLELLDLQDCNQ 203
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ + GL L G+T L+S+ + I+D + + +L SL+L+ + G+ + L
Sbjct: 204 VTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVGVDGMKVIGGL 263
Query: 348 TGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ L L L+GA +TD A + K+L LE+ T G+ H+ +S L LL+LS+
Sbjct: 264 SKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLSET 323
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
N+ + L ++ LT L +N+ + + AGL L + L+ L L+ C+VT
Sbjct: 324 ANIDNAGLAALAPLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDKCQVT 375
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 6/228 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L S+ + G +TD+ + ++KDC NL SL DG ++ + GLS L L
Sbjct: 216 TKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVGVDG-MKVIGGLSKLKELKLYGA 274
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ +T + AGL +L L+L T G+V+L G+ KL+ L++ I ++ + L
Sbjct: 275 SNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLSETANIDNAGLAAL 334
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LTNL+ + + + V D+G+A L G+ KL LNL+ C VT A L L L +L +L++
Sbjct: 335 APLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDKCQVTDAGLVHLKGLSNLEFLHIG 394
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK----GLTNLE 279
+++D G + + +LK L + F N+I+D+ + L+ GLT +E
Sbjct: 395 STRVTDTGLAELEGLKNLKHLVITFCNDISDDGVAKLQAALPGLTKIE 442
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 108/250 (43%), Gaps = 50/250 (20%)
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
G++ + LG E +DE L HLKGL +L L + G+ D GL NL G L + L +
Sbjct: 72 GNITEVKLGV-EGSDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSS 130
Query: 312 ISDGSLRKLAGLSSLKSLNL---------------------------------------- 331
++D + L L +L+ + L
Sbjct: 131 VTDAGMEHLTKLPALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDM 190
Query: 332 ---------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
D Q+T+ GLA L +T L L ++G ITD+ Y+++ KNL SL +
Sbjct: 191 SQLELLDLQDCNQVTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQS 250
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ G+K I LS L L L N+TD L I+GL L L + ++ TS G+ HL
Sbjct: 251 AVGVDGMKVIGGLSKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLA 310
Query: 443 PLKNLRSLTL 452
+ L+ L L
Sbjct: 311 GMSKLKLLDL 320
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 90/175 (51%), Gaps = 2/175 (1%)
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
DE L +L GL +L + + G++D L L G +L+ L L+ +TD G+ LT L
Sbjct: 85 DENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSSVTDAGMEHLTKLPA 144
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN- 408
L + L +T G L K LR + D + IKD+S L LL+L Q+CN
Sbjct: 145 LEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQLELLDL-QDCNQ 203
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+T+ L ++G+T L SL + IT + ++K KNL SL+LE V + +K
Sbjct: 204 VTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVGVDGMK 258
>gi|46447142|ref|YP_008507.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400783|emb|CAF24232.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 657
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 134/360 (37%), Positives = 195/360 (54%), Gaps = 32/360 (8%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKW 164
+++ L+F RN +T + NL L LE C + GL +L L+ L+ L++
Sbjct: 309 NDIEELNFSRNAYLTDAHLLVLKNCKNLKALYLEGCKNLTDTGLAHLSPLVALQHLSLFD 368
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLD 222
C +TD+ + LS L NL+ L +S SK T++G+A+L L L LNL GC +T L
Sbjct: 369 CENLTDAGLAYLSPLENLQHLNLSHSKHFTNAGLAHLSPLAALQHLNLFGCENLTGDGLT 428
Query: 223 SLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLES 280
LS+L +L +L LN C+ L+D G + + +L+ L+L F + +TD L HL L L+
Sbjct: 429 HLSSLVALQHLGLNFCRNLTDAGLAHLAPLVTLQHLDLNFCDNLTDTGLAHLTSLVTLQH 488
Query: 281 LNLDSC-GIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQIT 337
LNL C + D GLV+L+ L NL+ ++L+ ++D L L L +L+ LNL R++T
Sbjct: 489 LNLGWCRNLTDAGLVHLSPLENLQHLDLNDCYNLTDAGLAHLTPLVALQHLNLRRCRKLT 548
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D GLA LT L L +LDLFG R LTDAG+ H+ L +
Sbjct: 549 DAGLAHLTPLVALQYLDLFGCR-----------------------NLTDAGLTHLTPLIA 585
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
L L L NLTD+ L ++ L L L++S S +T+AGLRHL PL L+ L L C+
Sbjct: 586 LQHLYLGLCNNLTDRGLAHLTPLAVLQRLDLSFCSNLTNAGLRHLSPLVALKYLDLSGCE 645
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 164/311 (52%), Gaps = 9/311 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ L C ++D GL +L L NL L+ + T G+
Sbjct: 346 NLTDTGLAHLSPLVALQHLSLFDCENLTDAGLAYLSPLENLQHLNLSHSKHFTNAGLAHL 405
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L L L+L C + G GL +L L+ L+ L + +C +TD+ + L+ L L+ L
Sbjct: 406 SPLAALQHLNLFGCENLTGDGLTHLSSLVALQHLGLNFCRNLTDAGLAHLAPLVTLQHLD 465
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
++ C +TD+G+A+L L L LNL C +T A L LS L +L +L+LN C L+D
Sbjct: 466 LNFCDNLTDTGLAHLTSLVTLQHLNLGWCRNLTDAGLVHLSPLENLQHLDLNDCYNLTDA 525
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTN 301
G + + +L+ LNL ++TD L HL L L+ L+L C + D GL +LT L
Sbjct: 526 GLAHLTPLVALQHLNLRRCRKLTDAGLAHLTPLVALQYLDLFGCRNLTDAGLTHLTPLIA 585
Query: 302 LESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR 359
L+ + L ++D L L L+ L+ L+L +T+ GL L+ L L +LDL G
Sbjct: 586 LQHLYLGLCNNLTDRGLAHLTPLAVLQRLDLSFCSNLTNAGLRHLSPLVALKYLDLSGCE 645
Query: 360 -ITDSGAAYLR 369
+TD+G R
Sbjct: 646 NLTDAGWHIWR 656
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 140/291 (48%), Gaps = 55/291 (18%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++L G ++T GL HL LQ L NFC ++D GL HL
Sbjct: 409 AALQHLNLFGCENLTGDGLTHLSSLVALQHLGLNFCRNLTDAGLAHL------------- 455
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
A L+ L LDL C + GL +L L+ L+ LN+ WC +TD+ +
Sbjct: 456 ------------APLVTLQHLDLNFCDNLTDTGLAHLTSLVTLQHLNLGWCRNLTDAGLV 503
Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFY 232
LS L NL+ L ++ C +TD+G+A+L L L LNL C +T A L L+ L +L Y
Sbjct: 504 HLSPLENLQHLDLNDCYNLTDAGLAHLTPLVALQHLNLRRCRKLTDAGLAHLTPLVALQY 563
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDE 291
L+L C+ +TD L HL L L+ L L C + D
Sbjct: 564 LDLFGCR-----------------------NLTDAGLTHLTPLIALQHLYLGLCNNLTDR 600
Query: 292 GLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 340
GL +LT L L+ ++LSF + +++ LR L+ L +LK L+L +TD G
Sbjct: 601 GLAHLTPLAVLQRLDLSFCSNLTNAGLRHLSPLVALKYLDLSGCENLTDAG 651
>gi|168701673|ref|ZP_02733950.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 367
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 172/331 (51%), Gaps = 30/331 (9%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LSF R +T +G+K AGL NL L+L + +TD
Sbjct: 56 LSFTR---VTDKGLKELAGLKNLTHLNL-------------------------FSTWVTD 87
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ +K L+GL L +L ++ + VTD+G+ L L LT L L G VT A L L+AL L
Sbjct: 88 AGVKELAGLKGLTTLDLNSTSVTDAGMKELAALNNLTTLRLSGKGVTDAGLKELAALKKL 147
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L+L+ +++D G ++ + + L + L E+TD L L L L L+L + D
Sbjct: 148 ANLDLSHTKVTDAGLKELAALKGLTTIRLNNTEVTDAGLKELAALKKLADLDLSQTKVTD 207
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
GL L L L + L T ++D L++LAGL +L L+L +TD GL L +L L
Sbjct: 208 AGLKELAALKGLTCLGLLGTKVTDAGLKELAGL-NLTDLHLAGTPVTDAGLKELAALKNL 266
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
THL LFG ++T G L K L +L + +TDAGVK + L LT L+LS +T
Sbjct: 267 THLYLFGTKVTGVGLKELSGLKGLTTLYLNNTKVTDAGVKELSGLKGLTTLDLSY-TEMT 325
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
D ++ ++GL GL +L + +++T AG++ L
Sbjct: 326 DAGVKALAGLKGLTNLELYGTKVTDAGVKEL 356
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 168/305 (55%), Gaps = 3/305 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD +K L+GL NL L + + VTD+G+ L GL+ LT L+L VT A + L+AL
Sbjct: 61 VTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAGMKELAAL 120
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L L L+ ++D G ++ + + L L+L ++TD L L L L ++ L++
Sbjct: 121 NNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTIRLNNTE 180
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ D GL L L L ++LS T ++D L++LA L L L L ++TD GL L L
Sbjct: 181 VTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKELAGL 240
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
LT L L G +TD+G L KNL L + G +T G+K + L LT L L+ N
Sbjct: 241 N-LTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGLTTLYLN-NT 298
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+TD ++ +SGL GL +L++S + +T AG++ L LK L +L L KVT +K L S
Sbjct: 299 KVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNLELYGTKVTDAGVKELNS 358
Query: 468 RDLPN 472
LP
Sbjct: 359 A-LPK 362
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 166/300 (55%), Gaps = 3/300 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D GL+ L GL NLT L+ + +T G+K AGL L LDL + G+ L
Sbjct: 60 RVTDKGLKELAGLKNLTHLNL-FSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAGMKELA 118
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L +L + +TD+ +K L+ L L +L +S +KVTD+G+ L L+ LT + L
Sbjct: 119 ALNNLTTLRLSG-KGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTIRLN 177
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
VT A L L+AL L L+L++ +++D G ++ + + L L L ++TD L L
Sbjct: 178 NTEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKEL 237
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
GL NL L+L + D GL L L NL + L T ++ L++L+GL L +L L+
Sbjct: 238 AGL-NLTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGLTTLYLN 296
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
++TD G+ L+ L GLT LDL +TD+G L K L +LE+ G +TDAGVK +
Sbjct: 297 NTKVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNLELYGTKVTDAGVKEL 356
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 160/290 (55%), Gaps = 3/290 (1%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ +S ++VTD G+ L GL+ LT LNL VT A + L+ L L L+LN ++D G
Sbjct: 54 VYLSFTRVTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAG 113
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
++ + + +L L L +TD L L L L +L+L + D GL L L L +
Sbjct: 114 MKELAALNNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTT 173
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
I L+ T ++D L++LA L L L+L ++TD GL L +L GLT L L G ++TD+G
Sbjct: 174 IRLNNTEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAG 233
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L NL L + G +TDAG+K + L +LT L L +T L+ +SGL GL
Sbjct: 234 LKELAGL-NLTDLHLAGTPVTDAGLKELAALKNLTHLYLF-GTKVTGVGLKELSGLKGLT 291
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 473
+L ++N+++T AG++ L LK L +L L ++T +K L + L NL
Sbjct: 292 TLYLNNTKVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNL 341
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/328 (32%), Positives = 163/328 (49%), Gaps = 29/328 (8%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
+ V DK + +A +L ++L + VTD+G+ L L +LD N ++D G++
Sbjct: 58 FTRVTDKGLKELAGL-KNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLN-STSVTDAGMK 115
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
L L+NLT+L +T G+K A L L LDL GL L L L ++
Sbjct: 116 ELAALNNLTTLRL-SGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTI 174
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ +TD+ +K L+ L L L +S +KVTD+G+ L L+ LT L L G VT A
Sbjct: 175 RLNNTE-VTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAG 233
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L L+ L L+D L+L +TD L L L NL
Sbjct: 234 LKELAGL-----------NLTD--------------LHLAGTPVTDAGLKELAALKNLTH 268
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L L + GL L+GL L ++ L+ T ++D +++L+GL L +L+L ++TD G
Sbjct: 269 LYLFGTKVTGVGLKELSGLKGLTTLYLNNTKVTDAGVKELSGLKGLTTLDLSYTEMTDAG 328
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYL 368
+ AL L GLT+L+L+G ++TD+G L
Sbjct: 329 VKALAGLKGLTNLELYGTKVTDAGVKEL 356
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 40/217 (18%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFR--DCALQDL-------CLGQY-PGVNDKWMDVIAS 54
+++ EL + L ++ L + D L++L CLG V D + +A
Sbjct: 180 EVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKELA- 238
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
G +L + L+G+ VTD+GL L NL L + F +++ GL+ L GL LT+L +
Sbjct: 239 -GLNLTDLHLAGTPVTDAGLKELAALKNLTHL-YLFGTKVTGVGLKELSGLKGLTTL-YL 295
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N +T G+K +GL L LDL +TD+ +K
Sbjct: 296 NNTKVTDAGVKELSGLKGLTTLDLSYTE-------------------------MTDAGVK 330
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLN 210
L+GL L +L++ +KVTD+G+ L L K +LN
Sbjct: 331 ALAGLKGLTNLELYGTKVTDAGVKELNSALPKCKILN 367
>gi|46446626|ref|YP_007991.1| hypothetical protein pc0992 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400267|emb|CAF23716.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 583
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 132/360 (36%), Positives = 201/360 (55%), Gaps = 9/360 (2%)
Query: 47 KWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
++ +I + + ++D S + +TD+ L+ LK+C NL+ L C+ I+D GL HL L
Sbjct: 216 EFEKIINHFSNEIEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHLAPL 275
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
L L +T G+ L L LDL C GL +L L L+ LN+ +C
Sbjct: 276 VALQHLDLSDCENLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFC 335
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 224
+ TD+ + L+ LT L+ L + +TD+G+A+L L L L+L GC +T A L L
Sbjct: 336 SNATDAGLAHLTPLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHL 395
Query: 225 SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLN 282
L +L +LNLN C+ L+D G + + +L+ L+L F + ITD+ L HL LT L+ LN
Sbjct: 396 RPLTALQHLNLNWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLN 455
Query: 283 LDSC-GIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDT 339
L C + D GL +LT LT L+ +NL+ + ++D L L L+ L+ L L D + +TD
Sbjct: 456 LSGCYKLTDAGLAHLTLLTGLQHLNLNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDA 515
Query: 340 GLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 397
GLA LT LT L HL+L G ++TD+G A+L + L+ L++ LTD G+ K L++
Sbjct: 516 GLAHLTPLTALQHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRFKTLAT 575
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 197/355 (55%), Gaps = 10/355 (2%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++LDF+ ++D L L+ NL L AIT G+ A L+ L LDL C
Sbjct: 228 IEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDCE 287
Query: 143 RIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
+ GL +L L L+ L+++ C TD+ + L+ LT L+ L +S CS TD+G+A+L
Sbjct: 288 NLTDVGLAHLTPLTALQHLDLRGC-YFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHL 346
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL 259
L L L+L GC +T A L L+ L L +L+L C+ L+D G + +L+ LNL
Sbjct: 347 TPLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNL 406
Query: 260 GF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLS-FTGISDGS 316
+ +TD L HL LT L+ L+L C I D+GL +LT LT L+ +NLS ++D
Sbjct: 407 NWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAG 466
Query: 317 LRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNL 374
L L L+ L+ LNL+ + +TD GLA LT L GL +L L + +TD+G A+L L
Sbjct: 467 LAHLTLLTGLQHLNLNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTAL 526
Query: 375 RSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+ L + G LTDAG+ H+ L++L L+LS NLTD L+ L ++L +
Sbjct: 527 QHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRFKTLATSLNLEI 581
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 179/346 (51%), Gaps = 34/346 (9%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+L+ +TD+ + L NLK L + +C +TD G+A+L L L L+L C
Sbjct: 227 EIEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDC 286
Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL 272
+T L L+ L +L +L+L C +D G + + +L+ LNL F + TD L HL
Sbjct: 287 ENLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHL 346
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 331
LT L+ L+L C + D GL +LT LT L+ ++L ++D L L L++L+ LNL
Sbjct: 347 TPLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNL 406
Query: 332 D-ARQITDTGLAALTSLTGLTHLDL-FGARITD-------------------------SG 364
+ R +TD GLA LT LT L HLDL F + ITD +G
Sbjct: 407 NWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAG 466
Query: 365 AAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
A+L L+ L + LTDAG+ H+ L+ L L L+ NLTD L ++ LT L
Sbjct: 467 LAHLTLLTGLQHLNLNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTAL 526
Query: 424 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 467
LN+S ++T AGL HL L L+ L L C +T + + R ++
Sbjct: 527 QHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRFKT 572
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 155/283 (54%), Gaps = 10/283 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DL G TD+GL HL + LQ L+ +FC +D GL HL L+ L L R
Sbjct: 301 TALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHLTPLTALQHLDL-RG 359
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T G+ L L LDL C + GL +L+ L L+ LN+ WC +TD+ +
Sbjct: 360 CYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNLNWCRNLTDAGLAH 419
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 233
L+ LT L+ L +S CS +TD G+A+L L L LNL GC +T A L L+ L L +L
Sbjct: 420 LTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAGLAHLTLLTGLQHL 479
Query: 234 NLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGD 290
NLN + L+D G + + L+ L L +TD L HL LT L+ LNL C + D
Sbjct: 480 NLNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTALQHLNLSGCYKLTD 539
Query: 291 EGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 332
GL +LT LT L+ ++LS+ ++D L + L++ SLNL+
Sbjct: 540 AGLAHLTSLTALQYLDLSYCMNLTDDGLDRFKTLAT--SLNLE 580
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ + C +++D GL HL L+ L L +T G+ F
Sbjct: 511 NLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRF 570
Query: 128 AGLINLVKLDLER 140
L + L++ R
Sbjct: 571 KTLATSLNLEIIR 583
>gi|46447129|ref|YP_008494.1| hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400770|emb|CAF24219.1| hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 559
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 175/310 (56%), Gaps = 10/310 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN +TD+ L NLK L +SC +TD +A+L L L LNL C
Sbjct: 226 EIEALNFSNNTYLTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQHLNLSKC 285
Query: 215 -PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T L L+ L +L +L+L+ C+ L+D G + + +L+ LNL GF ++TD LVH
Sbjct: 286 RKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLTDAGLVH 345
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 329
L LT L+ L+L C + D GL +LT LT L+ +NLS + ++D L +L L++L+ L
Sbjct: 346 LTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFLTALQHL 405
Query: 330 NL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTD 386
+L D +T GL LTSLT L HL L + +TD+G +L L+ L + G LTD
Sbjct: 406 DLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAGLIHLTPLTALQHLNLSGCFHLTD 465
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLK 445
AG+ H+ L++L LNL NLTD L ++ LT L LN+S +T AGL HL L
Sbjct: 466 AGLVHLTPLTALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLT 525
Query: 446 NLRSLTLESC 455
L+ L L C
Sbjct: 526 ALQHLNLSYC 535
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 126/338 (37%), Positives = 182/338 (53%), Gaps = 11/338 (3%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLES 159
+ LSN + +L+F N +T A NL L L C I L +L L L+
Sbjct: 220 INHLSNEIEALNFSNNTYLTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQH 279
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 217
LN+ C +TD+ + L+ LT L+ L +S C +TD+G+A+L L+ L LNL G +T
Sbjct: 280 LNLSKCRKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLT 339
Query: 218 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 275
A L L+ L +L YL+L+ C+ L+D G + + L+ LNL G+ +TD L L L
Sbjct: 340 DAGLVHLTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFL 399
Query: 276 TNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 333
T L+ L+L C + GL LT LT L+ + LS+ ++D L L L++L+ LNL
Sbjct: 400 TALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAGLIHLTPLTALQHLNLSG 459
Query: 334 -RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 390
+TD GL LT LT L HL+L G +TD+G AYL L+ L + LT+AG+
Sbjct: 460 CFHLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLT 519
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
H+ L++L LNLS NLTD LE L ++L +
Sbjct: 520 HLASLTALQHLNLSYCDNLTDAGLERFKALAASLNLKI 557
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 119/365 (32%), Positives = 182/365 (49%), Gaps = 59/365 (16%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ A +DC L+ L L + D + + + ++L ++LS +TD+GL+HL
Sbjct: 238 LTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHL-TPLTALQHLNLSKCRKLTDTGLVHL 296
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ LQ LD ++C ++D GL HL L L L+ R F L +
Sbjct: 297 TPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLR-----------GFGKLTD----- 340
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
GLV+L L L+ L++ WC +TD+ + L+ LT L+ L +S +TD+G
Sbjct: 341 --------AGLVHLTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAG 392
Query: 197 IAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
+A L L L L+L C +T+A L+ L++L +L +L L+ C
Sbjct: 393 LARLIFLTALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCM---------------- 436
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINL-SFTGIS 313
+TD L+HL LT L+ LNL C + D GLV+LT LT L+ +NL ++
Sbjct: 437 -------NLTDAGLIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTALQHLNLGGCENLT 489
Query: 314 DGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNF 371
D L L L++L+ LNL + +T+ GL L SLT L HL+L + +TD+G L F
Sbjct: 490 DAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSYCDNLTDAG---LERF 546
Query: 372 KNLRS 376
K L +
Sbjct: 547 KALAA 551
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 122/232 (52%), Gaps = 34/232 (14%)
Query: 247 KFSKI-----GSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
+F +I ++ LN N +TD LK NL+ L+L SC I D+ L +LT L
Sbjct: 215 EFERIINHLSNEIEALNFSNNTYLTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPL 274
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGA 358
T L+ +NLS R++TDTGL LT LT L HLDL +
Sbjct: 275 TALQHLNLS-----------------------KCRKLTDTGLVHLTPLTALQHLDLSYCK 311
Query: 359 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+TD+G A+L K L+ L + G G LTDAG+ H+ L++L L+LS NLTD L +
Sbjct: 312 NLTDAGLAHLTPLKALQHLNLRGFGKLTDAGLVHLTPLTALQYLDLSWCKNLTDAGLAHL 371
Query: 418 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQS 467
+ LTGL LN+S +T AGL L L L+ L L C+ +T+ ++RL S
Sbjct: 372 TPLTGLQHLNLSGWYHLTDAGLARLIFLTALQHLDLSDCENLTSAGLERLTS 423
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++L G ++TD+GL +L + LQ L+ + C +++ GL HL L+ L L+
Sbjct: 475 TALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSY 534
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
+ +T G++ F L + L + R
Sbjct: 535 CDNLTDAGLERFKALAASLNLKIIR 559
>gi|46447300|ref|YP_008665.1| hypothetical protein pc1666 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400941|emb|CAF24390.1| hypothetical protein pc1666 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 518
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 127/342 (37%), Positives = 188/342 (54%), Gaps = 13/342 (3%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 159
L+ SN + +L+F N + + NL L L+ C + GL +L L+ L+
Sbjct: 179 LKFFSNEIEALNFSENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQH 238
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 217
LN+ +C+ +TD+ + L+ L L+ L +S C +TD+G+ +L L L LNL C +T
Sbjct: 239 LNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLT 298
Query: 218 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 275
A L L++L +L +L+L C L+D G + + +L+ LNL + ++TD L HL L
Sbjct: 299 DAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTSL 358
Query: 276 TNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD- 332
L+ L+L C + + GL +LT L L+ + LS ++D L L L +L+ LNL
Sbjct: 359 VALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLSI 418
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVK 390
++ITD GLA LT L L HLDL G ++TD G A+L L+ L++ C LTDAG+
Sbjct: 419 CKKITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLV 478
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
H+K L +L LNLS NLTD L LT SLN+ SR
Sbjct: 479 HLKPLMALQHLNLSYCTNLTDAGLAHFKNLT--TSLNLKLSR 518
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 178/341 (52%), Gaps = 34/341 (9%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K F+ I + E I L+ LK L+ L ++ C+ +TD+ + L+ L L+
Sbjct: 179 LKFFSNEIEALNFS-ENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQ 237
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
L +S CSK+TD+G+A+L L L L+L C +T A L L+ L +L +LNL+ C +L
Sbjct: 238 HLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKL 297
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+D G + + +L+ L+L + +TD L HL L L+ LNL C + D GL +LT
Sbjct: 298 TDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTS 357
Query: 299 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL- 355
L L+ ++L++ +++ L L L +L+ L L +TD GLA LTSL L HL+L
Sbjct: 358 LVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLS 417
Query: 356 FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ITD G A+L L+ L++ G LTD G+ H+ L +L L+L+ NLTD
Sbjct: 418 ICKKITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTD--- 474
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
AGL HLKPL L+ L L C
Sbjct: 475 ---------------------AGLVHLKPLMALQHLNLSYC 494
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 157/289 (54%), Gaps = 8/289 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ L+ ++C +++D GL HL L L L + +T G+
Sbjct: 221 NLTDAGLSHLAPLVTLQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHL 280
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L L+L C+++ GL +L L+ L+ L++ WC +TD + L+ L L+ L
Sbjct: 281 TPLAALQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLN 340
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
+S C K+TD G+A+L L L L+L C +T L L+ L +L +L L++C L+D
Sbjct: 341 LSYCIKLTDVGLAHLTSLVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDA 400
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTN 301
G + + +L+ LNL +ITD L HL L L+ L+L C + D GL +LT L
Sbjct: 401 GLAHLTSLVALQHLNLSICKKITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVA 460
Query: 302 LESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 348
L+ ++L+ ++D L L L +L+ LNL +TD GLA +LT
Sbjct: 461 LQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYCTNLTDAGLAHFKNLT 509
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/272 (35%), Positives = 150/272 (55%), Gaps = 9/272 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S +TD+GL HL LQ LD + C ++D GL HL L+ L L+ + +T G+
Sbjct: 245 SKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAH 304
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+ L LDL C + GL +L L L+ LN+ +C +TD + L+ L L+ L
Sbjct: 305 LTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTSLVALQHL 364
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
++ C +T+ G+A+L L L L L C +T A L L++L +L +LNL+ C +++D
Sbjct: 365 DLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLSICKKITD 424
Query: 243 DGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLT 300
G + + +L+ L+L G +++TD L HL L L+ L+L C + D GLV+L L
Sbjct: 425 VGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLM 484
Query: 301 NLESINLSF-TGISDGSLRKLAGLSSLKSLNL 331
L+ +NLS+ T ++D L L++ SLNL
Sbjct: 485 ALQHLNLSYCTNLTDAGLAHFKNLTT--SLNL 514
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 114/210 (54%), Gaps = 7/210 (3%)
Query: 254 LKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLS-FT 310
LKVL L + +TD L HL L L+ LNL C + D GL +LT L L+ ++LS
Sbjct: 211 LKVLYLQECHNLTDAGLSHLAPLVTLQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCY 270
Query: 311 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 368
++D L L L++L+ LNL ++TD GLA LTSL L HLDL + +TD G A+L
Sbjct: 271 NLTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHL 330
Query: 369 RNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L+ L + LTD G+ H+ L +L L+L+ NLT+ L ++ L L L
Sbjct: 331 TPLAALQHLNLSYCIKLTDVGLAHLTSLVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLE 390
Query: 428 VSNSR-ITSAGLRHLKPLKNLRSLTLESCK 456
+S +T AGL HL L L+ L L CK
Sbjct: 391 LSKCHNLTDAGLAHLTSLVALQHLNLSICK 420
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 58 SLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLSG D +TD GL HL LQ LD C+ ++D GL HL+ L L L+
Sbjct: 435 ALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYC 494
Query: 117 NAITAQGMKAFAGLINLVKLDLER 140
+T G+ F L + L L R
Sbjct: 495 TNLTDAGLAHFKNLTTSLNLKLSR 518
>gi|406835014|ref|ZP_11094608.1| hypothetical protein SpalD1_25335 [Schlesneria paludicola DSM
18645]
Length = 497
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 135/423 (31%), Positives = 217/423 (51%), Gaps = 7/423 (1%)
Query: 26 EAFRDCALQDLCLGQYPGVNDKWMDVIA--SQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
EA + + + N+K ++++ S ++L+ + S +T + L L NL
Sbjct: 70 EALPGRPVTTIYFDGHGKFNEKHLNLLMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNL 129
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
SL F +IS+ G+ L+ L NLT+LS + +T G++ + L L L +
Sbjct: 130 TSLHFE-NTEISNEGIHELQELKNLTTLSLHTTH-VTDAGLRNLREVSKLTTLSLSGNSI 187
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
G L L L SL+++ N I D + +S L NLK+L + +TDS + L+ +
Sbjct: 188 SDDGFKELGELKHLSSLSLRLEN-IDDVQLDEISKLENLKTLSLHVPSITDSELKQLRTV 246
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFN 262
+ LT L L +T A L L L +L L+L+ Q++D G ++ ++ +L L L G
Sbjct: 247 KNLTKLFLINSKITDAGLKPLLDLKNLTDLDLSSTQITDAGLKEIGQLENLTSLYLEGCG 306
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
ITD L+ + NL+ L L CGI D G+ L L +LE ++LS T I+D ++++ G
Sbjct: 307 GITDVGFRELRNIKNLKRLALARCGITDLGMKGLGQLKSLELLDLSRTPITDHGIQEIGG 366
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG- 381
L++L +L L ITD GL + L L L L A ITD+G L F N+ L +
Sbjct: 367 LTNLSTLWLLGSNITDLGLREINGLENLKELYLKSAFITDAGMKELGKFHNMNMLHLIQC 426
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
G+TDAG+K ++DL L++ L N+TD ++ + L LNV +++T +G+ L
Sbjct: 427 DGITDAGLKELRDLKKLSMFELYGCRNVTDAGIDELKEHKQLTILNVGATQVTVSGVNKL 486
Query: 442 KPL 444
K L
Sbjct: 487 KEL 489
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 165/299 (55%), Gaps = 2/299 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
IT + + LSGL NL SL +++++ GI L+ L+ LT L+L VT A L +L +
Sbjct: 115 ITSARLSDLSGLKNLTSLHFENTEISNEGIHELQELKNLTTLSLHTTHVTDAGLRNLREV 174
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L+L+ +SDDG ++ ++ L L+L I D L + L NL++L+L
Sbjct: 175 SKLTTLSLSGNSISDDGFKELGELKHLSSLSLRLENIDDVQLDEISKLENLKTLSLHVPS 234
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
I D L L + NL + L + I+D L+ L L +L L+L + QITD GL + L
Sbjct: 235 ITDSELKQLRTVKNLTKLFLINSKITDAGLKPLLDLKNLTDLDLSSTQITDAGLKEIGQL 294
Query: 348 TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT L L G ITD G LRN KNL+ L + G+TD G+K + L SL LL+LS+
Sbjct: 295 ENLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGITDLGMKGLGQLKSLELLDLSRT 354
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+TD ++ I GLT L +L + S IT GLR + L+NL+ L L+S +T +K L
Sbjct: 355 P-ITDHGIQEIGGLTNLSTLWLLGSNITDLGLREINGLENLKELYLKSAFITDAGMKEL 412
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 129/395 (32%), Positives = 199/395 (50%), Gaps = 6/395 (1%)
Query: 77 LKDCSNLQSLDF-NF-CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L S+L +L F NF QI+ L L GL NLTSL F N I+ +G+ L NL
Sbjct: 96 LMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNLTSLHFE-NTEISNEGIHELQELKNLT 154
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L L GL NL+ + KL +L++ N I+D K L L +L SL + + D
Sbjct: 155 TLSLHTTHVTDAGLRNLREVSKLTTLSLSG-NSISDDGFKELGELKHLSSLSLRLENIDD 213
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
+ + L+ L L+L +T + L L + +L L L +++D G + + +L
Sbjct: 214 VQLDEISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLINSKITDAGLKPLLDLKNL 273
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGIS 313
L+L +ITD L + L NL SL L+ CG I D G L + NL+ + L+ GI+
Sbjct: 274 TDLDLSSTQITDAGLKEIGQLENLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGIT 333
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
D ++ L L SL+ L+L ITD G+ + LT L+ L L G+ ITD G + +N
Sbjct: 334 DLGMKGLGQLKSLELLDLSRTPITDHGIQEIGGLTNLSTLWLLGSNITDLGLREINGLEN 393
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR- 432
L+ L + +TDAG+K + ++ +L+L Q +TD L+ + L L + R
Sbjct: 394 LKELYLKSAFITDAGMKELGKFHNMNMLHLIQCDGITDAGLKELRDLKKLSMFELYGCRN 453
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+T AG+ LK K L L + + +VT + + +L+
Sbjct: 454 VTDAGIDELKEHKQLTILNVGATQVTVSGVNKLKE 488
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 109/219 (49%), Gaps = 3/219 (1%)
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
FNE L+ LT L N S I L +L+GL NL S++ T IS+ + +L
Sbjct: 88 FNEKHLNLLMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNLTSLHFENTEISNEGIHEL 147
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
L +L +L+L +TD GL L ++ LT L L G I+D G L K+L SL +
Sbjct: 148 QELKNLTTLSLHTTHVTDAGLRNLREVSKLTTLSLSGNSISDDGFKELGELKHLSSLSLR 207
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
+ D + I L +L L+L ++TD L+ + + L L + NS+IT AGL+
Sbjct: 208 LENIDDVQLDEISKLENLKTLSL-HVPSITDSELKQLRTVKNLTKLFLINSKITDAGLKP 266
Query: 441 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
L LKNL L L S ++T +K + L NL S E
Sbjct: 267 LLDLKNLTDLDLSSTQITDAGLKEIGQ--LENLTSLYLE 303
>gi|149176715|ref|ZP_01855326.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148844356|gb|EDL58708.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 1266
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 140/462 (30%), Positives = 216/462 (46%), Gaps = 48/462 (10%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P ++DK + + S L S+ L+ + V+D GL L + L SL I+D L H
Sbjct: 272 PHIDDKSLACLKGL-SGLKSLTLNQTSVSDQGLQILNELKGLTSLTI-MQSPITDAALPH 329
Query: 102 LRGLSNLTSLSFRR-----------------------NNAITAQGMKAFAGLINLVKLDL 138
L GLS LTSL+ R + +T+ GM + K++
Sbjct: 330 LTGLSRLTSLNLARTAVTDAGMEHIIKLKQLKKLNLISTGVTSAGMARVHAALPKCKIET 389
Query: 139 ERCT--------------------RIHGGLVNLKGLMKLESL-NIKWC-NCITDSDMKPL 176
+ T I V G + E +I++ N I D+ +K L
Sbjct: 390 GKATAPGDSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHL 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LKS+ + +TD +L GL +L L L G +T L +L+ L SL L+L+
Sbjct: 450 KHVPRLKSVSFISTSITDDCTRHLSGLSELETLQLPGTAITDKGLATLNDLKSLENLDLS 509
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R ++D G K LK LNLG +TD L HLK L LESL L + + GL L
Sbjct: 510 RSGITDAGLVSLKKFPQLKTLNLGSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSEL 569
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L L++++LS T +++ L+ ++ L L+SL+L +I G+ L LT LT L L
Sbjct: 570 VTLPKLKTLDLSLTPLTETGLQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLD 629
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I D+ A + LRSL + +TD G+ H+++L L +L+L + +++ L+
Sbjct: 630 YTQIDDTALASIAKLTKLRSLNLRKTEITDTGMVHLENLKPLKVLSLDE-TRVSNAGLKS 688
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ L L L + + I AGL+ L + NL+SL L KVT
Sbjct: 689 LQSLQQLYRLGLRETDIDDAGLKTLSSIFNLKSLDLYGTKVT 730
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 139/484 (28%), Positives = 229/484 (47%), Gaps = 53/484 (10%)
Query: 40 QYPG--VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG 97
Q PG + DK + + + SL ++DLS S +TD+GL+ LK L++L+ +++D
Sbjct: 483 QLPGTAITDKGLATL-NDLKSLENLDLSRSGITDAGLVSLKKFPQLKTLNLG-STRVTDA 540
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
GL HL+ L L SL N ++T G+ L L LDL GL + L+ L
Sbjct: 541 GLTHLKALPKLESLKLY-NTSVTGTGLSELVTLPKLKTLDLSLTPLTETGLQTVSKLIHL 599
Query: 158 ESLNIKWCNC-----------------------ITDSDMKPLSGLTNLKSLQISCSKVTD 194
+SL++ I D+ + ++ LT L+SL + +++TD
Sbjct: 600 QSLSLTKTKINSAGVKHLVPLTELTTLKLDYTQIDDTALASIAKLTKLRSLNLRKTEITD 659
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
+G+ +L+ L+ L +L+L+ V+ A L SL +L L+ L L + D G + S I +L
Sbjct: 660 TGMVHLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETDIDDAGLKTLSSIFNL 719
Query: 255 KVLNLGFNEITDECLVHLK-GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF---T 310
K L+L ++TD + + L LNL G+ + G+ L I S +
Sbjct: 720 KSLDLYGTKVTDTGMAYFHDKLIKPTDLNLHGTGVTEAGVAMLKQQCPNCRIQASPPLDS 779
Query: 311 GISD--GSLRKLAGLSSLKSLNLDARQIT----------------DTGLAALTSLTGLTH 352
GI L+K G + + L +A Q+ D L+ L L L
Sbjct: 780 GIQSILAKLKKSGGFYTRRRLPENAEQLVVRFYPLPGREKKLSPLDERLSLLNGLKTLYE 839
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
LD+ GA +TD+G +L++ LR L++ GG T+ G+K + L L +L + +N +T+
Sbjct: 840 LDVAGADLTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQI-ENAGITND 898
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
L + +T L + ++IT GL+HL L NL+ L L ++ ++ + L S L N
Sbjct: 899 QLIQLKEMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGMVHLAS--LEN 956
Query: 473 LVSF 476
L S
Sbjct: 957 LRSL 960
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 163/334 (48%), Gaps = 27/334 (8%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S+ G+ + D+ + HLK L+S+ F I+D HL GLS L +L AIT
Sbjct: 433 SIRFFGNQIVDAQVKHLKHVPRLKSVSF-ISTSITDDCTRHLSGLSELETLQLP-GTAIT 490
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G+ L +L LDL R GLV+LK +L++LN+
Sbjct: 491 DKGLATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKTLNL------------------ 532
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
++VTD+G+ +LK L KL L L VT L L L L L+L+ L
Sbjct: 533 -------GSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSELVTLPKLKTLDLSLTPL 585
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
++ G + SK+ L+ L+L +I + HL LT L +L LD I D L ++ LT
Sbjct: 586 TETGLQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLDYTQIDDTALASIAKLT 645
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
L S+NL T I+D + L L LK L+LD ++++ GL +L SL L L L I
Sbjct: 646 KLRSLNLRKTEITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETDI 705
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
D+G L + NL+SL++ G +TD G+ + D
Sbjct: 706 DDAGLKTLSSIFNLKSLDLYGTKVTDTGMAYFHD 739
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 153/583 (26%), Positives = 243/583 (41%), Gaps = 145/583 (24%)
Query: 28 FRDCALQDLC---LGQYPGVNDKWMDVIASQGSSLLSVD---------LSGSDVTDSGLI 75
F++C L+D L Q+P + ++ + L+ + L + ++DSGL
Sbjct: 111 FQNCPLEDDAFQHLKQFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLE 170
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA-------------- 121
HL + L SL+ + +IS+ GL HL L L L +A
Sbjct: 171 HLNNLKELNSLNL-YQTKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKI 229
Query: 122 --------------QGMKAFAGLINLVKLDLERC------TRIH---GGLVNLKGLMKLE 158
+ +K+ G + LD R +R H L LKGL L+
Sbjct: 230 LFDRPVLPAHLKVARQVKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLK 289
Query: 159 SLNIKWCNC-----------------------ITDSDMKPLSGLTNLKSLQISCSKVTDS 195
SL + + ITD+ + L+GL+ L SL ++ + VTD+
Sbjct: 290 SLTLNQTSVSDQGLQILNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLARTAVTDA 349
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSA----------------------------- 226
G+ ++ L++L LNL VT+A + + A
Sbjct: 350 GMEHIIKLKQLKKLNLISTGVTSAGMARVHAALPKCKIETGKATAPGDSTQAQAAIAALK 409
Query: 227 ----------------LGSLFYLNLNRC--QLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L S ++ ++ Q+ D + + LK ++ ITD+C
Sbjct: 410 AQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHLKHVPRLKSVSFISTSITDDC 469
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
HL GL+ LE+L L I D+GL L L +LE+++LS +GI+D L L LK+
Sbjct: 470 TRHLSGLSELETLQLPGTAITDKGLATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKT 529
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-- 386
LNL + ++TD GL L +L L L L+ +T +G + L L++L++ LT+
Sbjct: 530 LNLGSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSELVTLPKLKTLDLSLTPLTETG 589
Query: 387 ----------------------AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
AGVKH+ L+ LT L L + D L I+ LT L
Sbjct: 590 LQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLDY-TQIDDTALASIAKLTKLR 648
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
SLN+ + IT G+ HL+ LK L+ L+L+ +V+ +K LQS
Sbjct: 649 SLNLRKTEITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQS 691
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 144/463 (31%), Positives = 217/463 (46%), Gaps = 57/463 (12%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L+ + + +G+ HL + L +L ++ QI D L + L+ L SL+ R+
Sbjct: 599 LQSLSLTKTKINSAGVKHLVPLTELTTLKLDYT-QIDDTALASIAKLTKLRSLNLRKTE- 656
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT GM L L L L+ + GL +L+ L +L L ++ + I D+ +K LS
Sbjct: 657 ITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETD-IDDAGLKTLSS 715
Query: 179 LTNLKSLQISCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAA------------------ 219
+ NLKSL + +KVTD+G+AY L K T LNL G VT A
Sbjct: 716 IFNLKSLDLYGTKVTDTGMAYFHDKLIKPTDLNLHGTGVTEAGVAMLKQQCPNCRIQASP 775
Query: 220 CLDS--LSALGSL-----FYLNLNRCQLSDDGC--------------------EKFSKIG 252
LDS S L L FY R +L ++ E+ S +
Sbjct: 776 PLDSGIQSILAKLKKSGGFY---TRRRLPENAEQLVVRFYPLPGREKKLSPLDERLSLLN 832
Query: 253 SLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
LK L ++ ++TD L HLK + L L L+ +EGL LT L LE + +
Sbjct: 833 GLKTLYELDVAGADLTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQIEN 892
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
GI++ L +L ++ LK L QIT+ GL L+ LT L L+L RI G +L
Sbjct: 893 AGITNDQLIQLKEMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGMVHLA 952
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
+ +NLRSL + + D G++ + L L L L +TD L+ +T L L+++
Sbjct: 953 SLENLRSLALEHTRVADQGLEDLLRLPRLNTLILD-GTTITDGGTPLLRKMTSLGMLSLN 1011
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
++ IT GL+ L+ L+ L L L KV+ + +K Q R P
Sbjct: 1012 STYITDRGLKDLETLRGLYRLDLNDTKVSEDGVKNFQ-RSQPK 1053
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 117/443 (26%), Positives = 204/443 (46%), Gaps = 55/443 (12%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN------------------FCIQISDGGL 99
+L +D++G+D+TD+GL HLK L+ L N +QI + G+
Sbjct: 836 TLYELDVAGADLTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQIENAGI 895
Query: 100 --EHLRGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
+ L L +T L N IT G+K +GL NL L+L + G+V+L L
Sbjct: 896 TNDQLIQLKEMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGMVHLASLE 955
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L SL ++ + D ++ L L L +L + + +TD G L+ + L +L+L
Sbjct: 956 NLRSLALEHTR-VADQGLEDLLRLPRLNTLILDGTTITDGGTPLLRKMTSLGMLSLNSTY 1014
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T L L L L+ L+LN ++S+DG + F + S N+ + L ++
Sbjct: 1015 ITDRGLKDLETLRGLYRLDLNDTKVSEDGVKNFQR--SQPKCNIEYAAPLASSLQYVIQE 1072
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTN-LESI-----NLSFTGISDGSLRKLAGLSSLKSL 329
N++ G ++ N L+ I + D L++++ + LK L
Sbjct: 1073 LKEAGANVNVINQGHHYVIESVEFPNHLQGIFAIHNRAEKAKVFDSCLKRISEMKDLKRL 1132
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
++ + +T L + +LT L+ LDL G+RI D G L+ NL+ L++ +TDAGV
Sbjct: 1133 SMHWAEFDNTKLEYIKNLTYLSELDLSGSRIPDQGIKDLKGLVNLQKLKLEHTQITDAGV 1192
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
+ L L L SL++ +S+ T+A L LK ++ LR
Sbjct: 1193 AQLAQLQ-----------------------LNRLYSLDLDHSKTTAACLESLKDMQRLRF 1229
Query: 450 LTLESCKVTANDIKRLQSRDLPN 472
L+L+ +++A D+++ + + LP+
Sbjct: 1230 LSLQHLELSAADLEKFK-QALPS 1251
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 174/381 (45%), Gaps = 60/381 (15%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L GL L L++ + +TD+ +K L + L+ L+++ T+ G+ L L+KL +L
Sbjct: 831 LNGLKTLYELDVAGAD-LTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQ 889
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+E +T L L + L L + Q+++ G + S + +LKVLNL N I + +V
Sbjct: 890 IENAGITNDQLIQLKEMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGMV 949
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
HL L NL SL L+ + D+GL +L L L ++ L T I+DG L ++SL L+
Sbjct: 950 HLASLENLRSLALEHTRVADQGLEDLLRLPRLNTLILDGTTITDGGTPLLRKMTSLGMLS 1009
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR-------------SL 377
L++ ITD GL L +L GL LDL ++++ G ++NF+ + SL
Sbjct: 1010 LNSTYITDRGLKDLETLRGLYRLDLNDTKVSEDG---VKNFQRSQPKCNIEYAAPLASSL 1066
Query: 378 EICGGGLTDAG------------------------------------------VKHIKDL 395
+ L +AG +K I ++
Sbjct: 1067 QYVIQELKEAGANVNVINQGHHYVIESVEFPNHLQGIFAIHNRAEKAKVFDSCLKRISEM 1126
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L L++ + LE I LT L L++S SRI G++ LK L NL+ L LE
Sbjct: 1127 KDLKRLSMHW-AEFDNTKLEYIKNLTYLSELDLSGSRIPDQGIKDLKGLVNLQKLKLEHT 1185
Query: 456 KVTANDIKRLQSRDLPNLVSF 476
++T + +L L L S
Sbjct: 1186 QITDAGVAQLAQLQLNRLYSL 1206
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 141/291 (48%), Gaps = 19/291 (6%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
S+ + +K+TD+ I ++ L+ + L ++ + L SL+ L L L C L DD
Sbjct: 60 SVSFTNNKITDTQIKFINHLKDIRKLGFYNVKISGSGLQSLTNLKHLQNLEFQNCPLEDD 119
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
+ + +L L + +TD+CLVHLK LT LE L L + I D GL +L L L
Sbjct: 120 AFQHLKQFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLEHLNNLKELN 179
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG-----------LTH 352
S+NL T IS+ L L+ L LK L ++ ++T G+A L H
Sbjct: 180 SLNLYQTKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKILFDRPVLPAH 239
Query: 353 LDLFGARITDSGAAYLR-----NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L + AR S ++R + L S+ + + D + +K LS L L L+Q
Sbjct: 240 LKV--ARQVKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLNQ-T 296
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+++D+ L++++ L GL SL + S IT A L HL L L SL L VT
Sbjct: 297 SVSDQGLQILNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLARTAVT 347
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 138/484 (28%), Positives = 214/484 (44%), Gaps = 95/484 (19%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
++ SGL L + +LQ+L+F C + D +HL+ LT L F R+ +T Q +
Sbjct: 92 ISGSGLQSLTNLKHLQNLEFQNC-PLEDDAFQHLKQFPALTHL-FVRHVPLTDQCLVHLK 149
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L L GL +L L +L SLN+ + I+++ + LS L LK L+++
Sbjct: 150 DLTQLEVLWLFATQISDSGLEHLNNLKELNSLNL-YQTKISNAGLTHLSELKKLKQLEVN 208
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS--LSALGSLFYLNLNRCQLSDDGCE 246
+KVT +G+A L+ E P D L A +L + R S G
Sbjct: 209 ETKVTSAGVAELQ----------EAIPECKILFDRPVLPA-----HLKVARQVKSLGGFV 253
Query: 247 KFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
++ + ++L +L I D+ L LKGL+ L+SL L+ + D+GL L L L
Sbjct: 254 RYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLNQTSVSDQGLQILNELKGLT 313
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL----------TGLT-- 351
S+ + + I+D +L L GLS L SLNL +TD G+ + L TG+T
Sbjct: 314 SLTIMQSPITDAALPHLTGLSRLTSLNLARTAVTDAGMEHIIKLKQLKKLNLISTGVTSA 373
Query: 352 -----HLDLFGARITDSGA--------------------AYLRN---FKN-------LRS 376
H L +I A A+++N FKN S
Sbjct: 374 GMARVHAALPKCKIETGKATAPGDSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTS 433
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLL-----NLSQNCN------------------LTDKT 413
+ G + DA VKH+K + L + +++ +C +TDK
Sbjct: 434 IRFFGNQIVDAQVKHLKHVPRLKSVSFISTSITDDCTRHLSGLSELETLQLPGTAITDKG 493
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
L ++ L L +L++S S IT AGL LK L++L L S +VT + L++ LP L
Sbjct: 494 LATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKTLNLGSTRVTDAGLTHLKA--LPKL 551
Query: 474 VSFR 477
S +
Sbjct: 552 ESLK 555
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 165/336 (49%), Gaps = 21/336 (6%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR----RN 116
SV + + +TD+ + + +++ L F + ++IS GL+ L L +L +L F+ +
Sbjct: 60 SVSFTNNKITDTQIKFINHLKDIRKLGF-YNVKISGSGLQSLTNLKHLQNLEFQNCPLED 118
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+A Q +K F L +L + LV+LK L +LE L + + I+DS ++ L
Sbjct: 119 DAF--QHLKQFPALTHLF---VRHVPLTDQCLVHLKDLTQLEVLWL-FATQISDSGLEHL 172
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L SL + +K++++G+ +L L+KL L + VT+A + L + +
Sbjct: 173 NNLKELNSLNLYQTKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKILFD 232
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R L + ++ SL GF D L L S++L I D+ L L
Sbjct: 233 RPVLPAH-LKVARQVKSLG----GFVRYQD-----LDQHRLLSSISLSRPHIDDKSLACL 282
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
GL+ L+S+ L+ T +SD L+ L L L SL + ITD L LT L+ LT L+L
Sbjct: 283 KGLSGLKSLTLNQTSVSDQGLQILNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLA 342
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+TD+G ++ K L+ L + G+T AG+ +
Sbjct: 343 RTAVTDAGMEHIIKLKQLKKLNLISTGVTSAGMARV 378
>gi|301118238|ref|XP_002906847.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108196|gb|EEY66248.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 648
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 139/414 (33%), Positives = 211/414 (50%), Gaps = 35/414 (8%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD G+ L + ++L SL+ + C Q++D G+ L L L L +T QG A A
Sbjct: 258 LTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALA 317
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ- 186
L+NLV LD+ C I G L KL S N+ +C+ I D+ + + LT ++ L
Sbjct: 318 PLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNF 377
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
+ C KVTD G+ + L+ LT L++ C VT L+ LS L L L L C + D+G
Sbjct: 378 MKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEG 437
Query: 245 CEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNL 302
S + SL +L+L ++ ++ L+ + L NL +LNL C I D+G+ +L GLT L
Sbjct: 438 IAALSHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLNLMRCNRIDDDGIAHLAGLTRL 497
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RIT 361
+++NL+ + R +TD + +TGL L L+ ++T
Sbjct: 498 KTLNLA-----------------------NCRLLTDRATKTVAQMTGLESLVLWYCNKLT 534
Query: 362 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
D+G L L+S+++ LTDA ++ ++ +LT L+L C L+D+ + +S +
Sbjct: 535 DAGILNLSTLTKLQSIDLASCSKLTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSKV 594
Query: 421 TGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL--QSRDL 470
T L SLN+S IT GL HLK L NL S+ L C KVT I L QS D
Sbjct: 595 TSLTSLNLSECGEITDTGLEHLKTLVNLSSVNLWYCTKVTPVGINFLPVQSVDF 648
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 148/443 (33%), Positives = 234/443 (52%), Gaps = 26/443 (5%)
Query: 55 QGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSN-LTSL 111
Q L V+L+G S +TD + L + S L S+ C Q++D ++ L SN LTS+
Sbjct: 138 QFPHLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSV 197
Query: 112 SFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN--C 167
+ ++ +G+ A A L L L+L C+++ G+ L L L++LN+ +CN
Sbjct: 198 NLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGA 257
Query: 168 ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
+TD + L+ +T+L SL +S CS++TD GI+ L L KL L + VT +L+
Sbjct: 258 LTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALA 317
Query: 226 ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
L +L L++ C ++D G E L NL + +EI D H++ LT + LN
Sbjct: 318 PLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNF 377
Query: 284 DSCG-IGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 340
CG + D GL ++ L NL S+++ S ++D L +L+ L+ LKSL L I D G
Sbjct: 378 MKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEG 437
Query: 341 LAALTSLTGLTHLDLFGARITDS----GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
+AAL+ L+ L LDL R + G LRN NL + + D G+ H+ L+
Sbjct: 438 IAALSHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLNLMRC--NRIDDDGIAHLAGLT 495
Query: 397 SLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLES 454
L LNL+ NC LTD+ + ++ +TGL SL + +++T AG+ +L L L+S+ L S
Sbjct: 496 RLKTLNLA-NCRLLTDRATKTVAQMTGLESLVLWYCNKLTDAGILNLSTLTKLQSIDLAS 554
Query: 455 C-KVTANDIKRLQSRDLPNLVSF 476
C K+T ++ ++PNL S
Sbjct: 555 CSKLTDASLEAFL--NMPNLTSL 575
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 171/331 (51%), Gaps = 33/331 (9%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L+++D++G ++TD+G L + L S + +C +I D +H+ L+ + L+F +
Sbjct: 321 NLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMKC 380
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T +G+++ A L NL LD+ C +TD + L
Sbjct: 381 GKVTDRGLRSIAKLRNLTSLDMVSCFN------------------------VTDEGLNEL 416
Query: 177 SGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLN 234
S L LKSL + CS + D GIA L L L +L+L C V L + AL +L LN
Sbjct: 417 SKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLN 476
Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
L RC ++ DDG + + LK LNL +TD + +T LESL L C + D
Sbjct: 477 LMRCNRIDDDGIAHLAGLTRLKTLNLANCRLLTDRATKTVAQMTGLESLVLWYCNKLTDA 536
Query: 292 GLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTG 349
G++NL+ LT L+SI+L S + ++D SL + +L SL+L + ++D G+ L+ +T
Sbjct: 537 GILNLSTLTKLQSIDLASCSKLTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSKVTS 596
Query: 350 LTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 379
LT L+L ITD+G +L+ NL S+ +
Sbjct: 597 LTSLNLSECGEITDTGLEHLKTLVNLSSVNL 627
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 5/210 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFC 91
L+ L LG G+ D+ + + S SSL+ +DLS V + L+ + NL +L+ C
Sbjct: 422 LKSLYLGGCSGIRDEGIAAL-SHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLNLMRC 480
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN 150
+I D G+ HL GL+ L +L+ +T + K A + L L L C ++ G++N
Sbjct: 481 NRIDDDGIAHLAGLTRLKTLNLANCRLLTDRATKTVAQMTGLESLVLWYCNKLTDAGILN 540
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLL 209
L L KL+S+++ C+ +TD+ ++ + NL SL + +C ++D G+ L + LT L
Sbjct: 541 LSTLTKLQSIDLASCSKLTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSKVTSLTSL 600
Query: 210 NLEGC-PVTAACLDSLSALGSLFYLNLNRC 238
NL C +T L+ L L +L +NL C
Sbjct: 601 NLSECGEITDTGLEHLKTLVNLSSVNLWYC 630
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 112/204 (54%), Gaps = 12/204 (5%)
Query: 264 ITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLS-FTGISDGSLRKL 320
I DE L+ L +L+ +NL C + DE + L L+ L S+ L ++D S++ L
Sbjct: 127 IFDENLMSLPMQFPHLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLL 186
Query: 321 --AGLSSLKSLNLD-ARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLR 375
+ +SL S+NL + ++D G+ A+ S L+ L +L+L G +++ D+G L KNL+
Sbjct: 187 TESQSNSLTSVNLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQ 246
Query: 376 SLEIC---GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-S 431
+L + G LTD G+ + +++SLT LNLS LTD+ + +S L L L ++N
Sbjct: 247 TLNLWYCNQGALTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVG 306
Query: 432 RITSAGLRHLKPLKNLRSLTLESC 455
+T G L PL NL +L + C
Sbjct: 307 EVTDQGFLALAPLVNLVTLDVAGC 330
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 57 SSLLSVDL-SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L S+DL S S +TD+ L + NL SLD C +SD G+ L +++LTSL+
Sbjct: 545 TKLQSIDLASCSKLTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSKVTSLTSLNLSE 604
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI 144
IT G++ L+NL ++L CT++
Sbjct: 605 CGEITDTGLEHLKTLVNLSSVNLWYCTKV 633
>gi|46447562|ref|YP_008927.1| hypothetical protein pc1928 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401203|emb|CAF24652.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 528
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 179/316 (56%), Gaps = 10/316 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+++ LN +TD+ L NLK+L +C +TD+G+A+LK L L LNL GC
Sbjct: 195 EIKKLNFSENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNLSGC 254
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T L L+ L L +L+L++C +DDG + + +L+ L L G + D L H
Sbjct: 255 YHLTDVGLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAH 314
Query: 272 LKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
LK LT+L+ LNL CG + D GL +L LT L+ +NLS ++D L L L +L+ L
Sbjct: 315 LKPLTSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYL 374
Query: 330 NLD-ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTD 386
NLD R++TD GLA LT +T L HLDL +TD G A+L K+L+ L++ LTD
Sbjct: 375 NLDNCRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTD 434
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLK 445
G+ H+ L++L L+LS NLTD L ++ LT L L++ + +T GL HL PL
Sbjct: 435 DGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLI 494
Query: 446 NLRSLTLESCKVTAND 461
L+ L L CK +D
Sbjct: 495 ALQYLDLIGCKNFTDD 510
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 176/321 (54%), Gaps = 12/321 (3%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ LK+C NL++L F C ++D GL HL+ L+ L L+ +T G+
Sbjct: 203 ENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNLSGCYHLTDVGL 262
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L LDL +C GL +L L L+ L + C + D+ + L LT+L+
Sbjct: 263 AHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAHLKPLTSLQ 322
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
L + C +TD+G+A+L L L LNL C +T L L L +L YLNL+ C +L
Sbjct: 323 HLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDNCRKL 382
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+DDG + + +L+ L+L +TD L HL L +L+ L+L C + D+GLV+LT
Sbjct: 383 TDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLVHLTP 442
Query: 299 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLF 356
LT L+ ++LS+ ++D L L L++L+ L+L + +TD GLA LT L L +LDL
Sbjct: 443 LTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQYLDLI 502
Query: 357 GAR-ITDSGAAYLRNFKNLRS 376
G + TD G A FKNL +
Sbjct: 503 GCKNFTDDGLA---RFKNLAA 520
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 171/330 (51%), Gaps = 10/330 (3%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 169
L+F N +T NL L E C + GL +LK L L+ LN+ C +T
Sbjct: 199 LNFSENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNLSGCYHLT 258
Query: 170 DSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSAL 227
D + L+ LT L+ L +S C TD G+A+L L L L L GC + A L L L
Sbjct: 259 DVGLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAHLKPL 318
Query: 228 GSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS 285
SL +LNL C L+D G + + L+ LNL E +TD L HL+ L L+ LNLD+
Sbjct: 319 TSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDN 378
Query: 286 C-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLA 342
C + D+GL +LT +TNL+ ++LS ++D L L L SL+ L+L +TD GL
Sbjct: 379 CRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLV 438
Query: 343 ALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 400
LT LT L HLDL + +TD G A+L L+ L++ G LTD G+ H+ L +L
Sbjct: 439 HLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQY 498
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L+L N TD L L ++L + N
Sbjct: 499 LDLIGCKNFTDDGLARFKNLAASLNLTIIN 528
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 133/247 (53%), Gaps = 9/247 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
TD GL HL + LQ L C + D GL HL+ L++L L+ R +T G+ A
Sbjct: 282 FTDDGLAHLTSLTALQYLALMGCKNLIDAGLAHLKPLTSLQHLNLRGCGYLTDAGLAHLA 341
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L L+L +C + GL +L+ L+ L+ LN+ C +TD + L+ +TNL+ L +
Sbjct: 342 PLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDNCRKLTDDGLAHLTPVTNLQHLDL 401
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C +TD G+A+L L+ L L+L C +T L L+ L +L +L+L+ C L+DDG
Sbjct: 402 SQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDG 461
Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLV---NLTGL 299
+ + +L+ L+L G +TD+ L HL L L+ L+L C D+GL NL
Sbjct: 462 LAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKNLAAS 521
Query: 300 TNLESIN 306
NL IN
Sbjct: 522 LNLTIIN 528
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 109/202 (53%), Gaps = 5/202 (2%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+SL ++L G +TD+GL HL + LQ L+ + C ++D GL HLR L L L+
Sbjct: 319 TSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDN 378
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ + NL LDL +C + GL +L L L+ L++ C +TD +
Sbjct: 379 CRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLV 438
Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
L+ LT L+ L +S C +TD G+A+L L L L+L GC +T L L+ L +L Y
Sbjct: 439 HLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQY 498
Query: 233 LNLNRCQ-LSDDGCEKFSKIGS 253
L+L C+ +DDG +F + +
Sbjct: 499 LDLIGCKNFTDDGLARFKNLAA 520
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL +DLS ++TD GL+HL + LQ LD ++C ++D GL HL L+ L L
Sbjct: 420 SLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGC 479
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+T G+ LI L LDL C GL K L SLN+ N
Sbjct: 480 KNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKNLAA--SLNLTIIN 528
>gi|298709085|emb|CBJ31033.1| Hypothetical leucine rich repeat protein [Ectocarpus siliculosus]
Length = 573
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 148/290 (51%), Gaps = 26/290 (8%)
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
C ++T+SG L LQ L L+L C V + + L L LNL+RC + D G
Sbjct: 307 CVRLTESGAHTLSALQDLETLDLSNCRVYSCVEELAQKLPGLTALNLDRCNVGDTGVRAL 366
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
S LT LE LNL I D G+ +L LT L +NL
Sbjct: 367 SS------------------------LTKLERLNLADTSITDAGMTHLAPLTRLRDLNLF 402
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY- 367
F I+D L LA LS+L LNLD R + D G+ LT L L LD+F A ITD G A+
Sbjct: 403 FCHITDAGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDVFSASITDFGVAHG 462
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L L +LE+C G LTD G+ H+ + SLT LN+SQN +T + + LT L SLN
Sbjct: 463 LCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHVGTLTRLRSLN 522
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
+S+ IT + L L L NL SL++ C++ D++ L+ + LPNL R
Sbjct: 523 LSSCNITPSSLNSLTGLVNLESLSVFGCRLEMTDLELLREK-LPNLRVVR 571
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 111/321 (34%), Positives = 161/321 (50%), Gaps = 36/321 (11%)
Query: 138 LERCTRIHGGLVNLKGLMKLES-----LNIKWCNCI--TDSDMKPLSGLTNLKSLQISCS 190
LER G+ N +GL +L + ++ C C+ T+S LS L +L++L +S
Sbjct: 274 LERVCLARSGIGN-EGLSRLSAGSPLLRDLDLCGCVRLTESGAHTLSALQDLETLDLSNC 332
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+V + L LT LNL+ C V + +LS+L L LNL ++D G +
Sbjct: 333 RVYSCVEELAQKLPGLTALNLDRCNVGDTGVRALSSLTKLERLNLADTSITDAGMTHLAP 392
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ L+ LNL F ITD L L L+NL LNLD+ +GD G+V LT L LES+++ F+
Sbjct: 393 LTRLRDLNLFFCHITDAGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDV-FS 451
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLR 369
ITD G+A L L LT L++ R+TD G +L
Sbjct: 452 A-----------------------SITDFGVAHGLCRLPCLTTLEVCSGRLTDRGLYHLS 488
Query: 370 NFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
K+L L + G+T AGV+H+ L+ L LNLS +CN+T +L ++GL L SL+V
Sbjct: 489 RVKSLTRLNVSQNFGITAAGVRHVGTLTRLRSLNLS-SCNITPSSLNSLTGLVNLESLSV 547
Query: 429 SNSRITSAGLRHLKP-LKNLR 448
R+ L L+ L NLR
Sbjct: 548 FGCRLEMTDLELLREKLPNLR 568
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 94/213 (44%), Gaps = 27/213 (12%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPR++ + L R L+ +L AFRDC + L LG+ GV + W+ LL
Sbjct: 22 LPREVVDALLGSLTQHRALSSYALRAFRDCEVTSLALGECRGVRNGWV-------RELLQ 74
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
G + +LD + C ++D GL L L +L S S RR + +
Sbjct: 75 ATPCGRCIV--------------TLDLSSCTGLTDTGLSDLPALKSLESASLRRCSGLGT 120
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+ + L L L C + V NL GL +L SL ++ C I+D ++ L
Sbjct: 121 EATLCLSNSPGLETLSLAHCPLLDDAAVGNLAGLSRLRSLELEGCENISDEGLRLACRLP 180
Query: 181 NLKSLQIS-CSKVTDSGIAYLK----GLQKLTL 208
+L L S C +T G+A L+ GL++L L
Sbjct: 181 SLTCLNASRCHGLTVDGLAGLEQAAGGLKRLNL 213
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 29/240 (12%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
++ +A + L +++L +V D+G+ L + L+ L+ I+D G+ HL L+ L
Sbjct: 338 VEELAQKLPGLTALNLDRCNVGDTGVRALSSLTKLERLNLAD-TSITDAGMTHLAPLTRL 396
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
L+ + IT G+ A L NLV+L+L+ G+V L L LESL++ + I
Sbjct: 397 RDLNLFFCH-ITDAGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDV-FSASI 454
Query: 169 TDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSA 226
TD + L L L +L++ ++TD G+ +L ++ LT LN+ + +TAA + +
Sbjct: 455 TDFGVAHGLCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHVGT 514
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L L LNL+ C IT L L GL NLESL++ C
Sbjct: 515 LTRLRSLNLSSCN------------------------ITPSSLNSLTGLVNLESLSVFGC 550
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 24/134 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD-FNFCI----------------------- 92
S+L+ ++L DV D+G++ L L+SLD F+ I
Sbjct: 418 SNLVRLNLDTRDVGDAGMVQLTRLRLLESLDVFSASITDFGVAHGLCRLPCLTTLEVCSG 477
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D GL HL + +LT L+ +N ITA G++ L L L+L C L +L
Sbjct: 478 RLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHVGTLTRLRSLNLSSCNITPSSLNSLT 537
Query: 153 GLMKLESLNIKWCN 166
GL+ LESL++ C
Sbjct: 538 GLVNLESLSVFGCR 551
>gi|348688896|gb|EGZ28710.1| hypothetical protein PHYSODRAFT_322345 [Phytophthora sojae]
Length = 683
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 138/408 (33%), Positives = 206/408 (50%), Gaps = 33/408 (8%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD G+ L ++L SL+ + C Q++D G+ L L NL L F +T G+KA
Sbjct: 292 NLTDDGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKAL 351
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
A L++L+ LD+ C I G L L S N+ +C+ I D+ + + LT ++ L
Sbjct: 352 APLVDLITLDIAGCYNITDAGTSVLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLN 411
Query: 187 -ISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
+ C KVTD G+ + L+ LT L++ C VT L+ L L L L L C + DD
Sbjct: 412 FMKCGKVTDKGLRSISKLRNLTSLDMVSCFNVTDDGLNELVGLHRLKSLYLGGCSGIRDD 471
Query: 244 GCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTN 301
G S++ SL +L+L ++ ++ L+ L L NL +LNL C I DEG+ L GL
Sbjct: 472 GIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNLNLMRCNRIDDEGIAYLAGLKR 531
Query: 302 LESINLSFTGI-SDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR 359
L+++NLS + +D + +A ++ L+S+ L ++TDTG+ L SLT L +DL
Sbjct: 532 LKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTDTGVMNLASLTKLQSIDLASC- 590
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
LTDA + + LT L+L C LTD+ + +
Sbjct: 591 ----------------------SKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGK 628
Query: 420 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 465
+T L SLN+S IT AGL HL L NL ++ L C KVT I L
Sbjct: 629 VTSLTSLNLSECGEITDAGLAHLAALVNLTNINLWYCTKVTKTGIDHL 676
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 128/399 (32%), Positives = 206/399 (51%), Gaps = 34/399 (8%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+SL S++LS S +TD G+ L NL+ L+F +++D GL+ L L +L +L
Sbjct: 305 TSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKALAPLVDLITLDIAG 364
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
IT G A NL +L C+ I +++ L K+ LN C +TD ++
Sbjct: 365 CYNITDAGTSVLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLNFMKCGKVTDKGLR 424
Query: 175 PLSGLTNLKSL-QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+S L NL SL +SC VTD G+ L GL +L L L GC
Sbjct: 425 SISKLRNLTSLDMVSCFNVTDDGLNELVGLHRLKSLYLGGCS------------------ 466
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
+ DDG S++ SL +L+L ++ ++ L+ L L NL +LNL C I DE
Sbjct: 467 -----GIRDDGIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNLNLMRCNRIDDE 521
Query: 292 GLVNLTGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTG 349
G+ L GL L+++NLS ++D + +A ++ L+S+ L ++TDTG+ L SLT
Sbjct: 522 GIAYLAGLKRLKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTDTGVMNLASLTK 581
Query: 350 LTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNC 407
L +DL +++TD+ + + L SL++ LTD G+ + ++SLT LNLS+
Sbjct: 582 LQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVTSLTSLNLSECG 641
Query: 408 NLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLK 445
+TD L ++ L L ++N+ +++T G+ HL P++
Sbjct: 642 EITDAGLAHLAALVNLTNINLWYCTKVTKTGIDHL-PVQ 679
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 126/442 (28%), Positives = 203/442 (45%), Gaps = 54/442 (12%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-- 139
NL+ ++ C ++D +E L + + S++ + +T +G+ A ++ L
Sbjct: 176 NLKEVNLTGCSNLTDESVEQLAQIPRMESIALKGCYQVTDKGIIALTESLSSSLTSLNLG 235
Query: 140 RCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK---VTD 194
C + V+ L KL L+++ C+ + D ++ L+ L +L +L + + +TD
Sbjct: 236 YCKVVSDEAVSAIAANLPKLNYLSLRGCSQVGDIGIRELARLKHLTTLNLWYANQGNLTD 295
Query: 195 SGIAYLKGLQKLTLLNLEGC--------------------------PVTAACLDSLSALG 228
GI+ L G+ LT LNL C VT L +L+ L
Sbjct: 296 DGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKALAPLV 355
Query: 229 SLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
L L++ C ++D G + +L NL + +EI D H++ LT + LN C
Sbjct: 356 DLITLDIAGCYNITDAGTSVLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLNFMKC 415
Query: 287 G-IGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 343
G + D+GL +++ L NL S+++ S ++D L +L GL LKSL L I D G+AA
Sbjct: 416 GKVTDKGLRSISKLRNLTSLDMVSCFNVTDDGLNELVGLHRLKSLYLGGCSGIRDDGIAA 475
Query: 344 LTSLTGLTHLDLFGARITDS----GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
L+ L L LDL R + G L N NL + + D G+ ++ L L
Sbjct: 476 LSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNLNLMRC--NRIDDEGIAYLAGLKRLK 533
Query: 400 LLNLSQNCN-LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK- 456
LNLS NC LTD I+ +T L S+ + +++T G+ +L L L+S+ L SC
Sbjct: 534 TLNLS-NCRLLTDAATTTIAQMTELESIVLWYCNKLTDTGVMNLASLTKLQSIDLASCSK 592
Query: 457 ------VTANDIKRLQSRDLPN 472
T I +L S DL N
Sbjct: 593 LTDACLSTFPSIPKLTSLDLGN 614
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 33/222 (14%)
Query: 246 EKFS----KIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
E FS + +LK +NL G + +TDE + L + +ES+ L C + D+G++ LT
Sbjct: 165 EHFSTLPMQFPNLKEVNLTGCSNLTDESVEQLAQIPRMESIALKGCYQVTDKGIIALTES 224
Query: 300 TNLESINLSF---TGISDGSLRKLAG-LSSLKSLNLDA-RQITDTGLAALTSLTGLTHLD 354
+ +L+ +SD ++ +A L L L+L Q+ D G+ L L LT L+
Sbjct: 225 LSSSLTSLNLGYCKVVSDEAVSAIAANLPKLNYLSLRGCSQVGDIGIRELARLKHLTTLN 284
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L+ A G LTD G+ + ++SLT LNLS LTD +
Sbjct: 285 LWYAN---------------------QGNLTDDGISALAGVTSLTSLNLSNCSQLTDVGI 323
Query: 415 ELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
+ L L L +N +T GL+ L PL +L +L + C
Sbjct: 324 SSLGALVNLRHLEFANVGEVTDNGLKALAPLVDLITLDIAGC 365
>gi|325110089|ref|YP_004271157.1| hypothetical protein Plabr_3538 [Planctomyces brasiliensis DSM
5305]
gi|324970357|gb|ADY61135.1| leucine-rich repeat-containing protein [Planctomyces brasiliensis
DSM 5305]
Length = 451
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 194/377 (51%), Gaps = 28/377 (7%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
N+ ++DF ++ +D L HL G + L + T+ GM GL +L L LE+
Sbjct: 84 NVTAVDFR-SVEAADDALTHLTGTPQVQEL-YLFGPGFTSAGMSDLQGLNDLRLLSLEKT 141
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GLV + + L +L ++ + ++D +K L GL L+ L + + ++D G+ L
Sbjct: 142 LIDDAGLVEIGRIPSLVALRLRQTD-VSDEGLKALGGLDKLRELDLRFTNISDEGLPAL- 199
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
A LDS+S + L+R ++SD+G + + I +++ L L
Sbjct: 200 -----------------AELDSISTV------KLDRTKISDEGVKTLAAIPTIRGLGLNL 236
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
+T+ L LK + L +L +D I D G+V+L G++NL++++L + D +
Sbjct: 237 TNLTNTALEALKERSELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIG 296
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
L SLK L++ I+D G A L +L L LDL I D G A+L KNL++LE+
Sbjct: 297 KLKSLKRLSIRDTVISDAGCAHLANLENLETLDLNETFIGDEGVAHLGGLKNLKTLELWF 356
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
+T G +++L++L LNL ++ + D LE ++GLT L +LN+ + IT GL HL
Sbjct: 357 TRITPQGTAPLQNLTALRELNL-EDTRIDDSALEPLAGLTELRTLNLKLTPITDEGLVHL 415
Query: 442 KPLKNLRSLTLESCKVT 458
LKNL + L + +V+
Sbjct: 416 HGLKNLEFVHLGNTQVS 432
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 107/363 (29%), Positives = 177/363 (48%), Gaps = 26/363 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+QG+ + +VD + D L HL +Q L + F + G+ L+GL++L LS
Sbjct: 81 AQGN-VTAVDFRSVEAADDALTHLTGTPQVQEL-YLFGPGFTSAGMSDLQGLNDLRLLSL 138
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC------ 167
+ I G+ + +LV L L + GL L GL KL L++++ N
Sbjct: 139 EKT-LIDDAGLVEIGRIPSLVALRLRQTDVSDEGLKALGGLDKLRELDLRFTNISDEGLP 197
Query: 168 -----------------ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
I+D +K L+ + ++ L ++ + +T++ + LK +L L
Sbjct: 198 ALAELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLE 257
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
++ + A + L + +L L+L R + D+G E K+ SLK L++ I+D
Sbjct: 258 MDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGCA 317
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
HL L NLE+L+L+ IGDEG+ +L GL NL+++ L FT I+ L L++L+ LN
Sbjct: 318 HLANLENLETLDLNETFIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALRELN 377
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L+ +I D+ L L LT L L+L ITD G +L KNL + + ++D G
Sbjct: 378 LEDTRIDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHLGNTQVSDEGTD 437
Query: 391 HIK 393
+K
Sbjct: 438 ALK 440
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 149/297 (50%), Gaps = 6/297 (2%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
N+ ++ + D + +L G ++ L L G T+A + L L L L+L + +
Sbjct: 84 NVTAVDFRSVEAADDALTHLTGTPQVQELYLFGPGFTSAGMSDLQGLNDLRLLSLEKTLI 143
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
D G + +I SL L L +++DE L L GL L L+L I DEGL L L
Sbjct: 144 DDAGLVEIGRIPSLVALRLRQTDVSDEGLKALGGLDKLRELDLRFTNISDEGLPALAELD 203
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
++ ++ L T ISD ++ LA + +++ L L+ +T+T L AL + L L++ +I
Sbjct: 204 SISTVKLDRTKISDEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLEMDDTQI 263
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
D+G +L NL++L + + D G + I L SL L++ ++ ++D ++ L
Sbjct: 264 DDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSI-RDTVISDAGCAHLANL 322
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
L +L+++ + I G+ HL LKNL++L L ++T LQ NL + R
Sbjct: 323 ENLETLDLNETFIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQ-----NLTALR 374
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 128/275 (46%), Gaps = 35/275 (12%)
Query: 212 EGCPVT-AACLDSLSALGSLFYLN---------LNRCQLSDDGCEKFSKIGSLKVLNLGF 261
E P +A +++L A G++ N + +DD + ++ L L
Sbjct: 57 ESTPADDSAAVEALEAAGAILKTNAQGNVTAVDFRSVEAADDALTHLTGTPQVQELYLFG 116
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
T + L+GL +L L+L+ I D GLV + + +L ++ L T +SD L+ L
Sbjct: 117 PGFTSAGMSDLQGLNDLRLLSLEKTLIDDAGLVEIGRIPSLVALRLRQTDVSDEGLKALG 176
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR------ 375
GL L+ L+L I+D GL AL L ++ + L +I+D G L +R
Sbjct: 177 GLDKLRELDLRFTNISDEGLPALAELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNL 236
Query: 376 ------------------SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+LE+ + DAG+ H++ +S+L L+L ++ ++ D+ E+I
Sbjct: 237 TNLTNTALEALKERSELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRD-DVGDEGFEII 295
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L L L++ ++ I+ AG HL L+NL +L L
Sbjct: 296 GKLKSLKRLSIRDTVISDAGCAHLANLENLETLDL 330
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 25/193 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSL--------DFNFCI---------------Q 93
S L+++++ + + D+G++HL+ SNLQ+L D F I
Sbjct: 251 SELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTV 310
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
ISD G HL L NL +L I +G+ GL NL L+L G L+
Sbjct: 311 ISDAGCAHLANLENLETLDLNET-FIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQN 369
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L LN++ I DS ++PL+GLT L++L + + +TD G+ +L GL+ L ++L
Sbjct: 370 LTALRELNLEDTR-IDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHLGN 428
Query: 214 CPVTAACLDSLSA 226
V+ D+L A
Sbjct: 429 TQVSDEGTDALKA 441
>gi|46447199|ref|YP_008564.1| hypothetical protein pc1565 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400840|emb|CAF24289.1| hypothetical protein pc1565 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 1143
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 207/389 (53%), Gaps = 36/389 (9%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A +DC L+ L L + D + + S +L +DL G +TDSGL HL
Sbjct: 767 LTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHL-SPLVALQHLDLGGCYKITDSGLAHL 825
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
LQ LD C +I+D GL +L L L L+ R +T G+ + L+ L LD
Sbjct: 826 SRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLD 885
Query: 138 LERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDS 195
L+RC +I GL +L L+ L+ LN+ CN +TDS + LS LT+LK L + C+K+TDS
Sbjct: 886 LDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDS 945
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSL 254
G+A+ LS L +L YLNLNRC L+D G S + +L
Sbjct: 946 GLAH------------------------LSLLVNLQYLNLNRCNNLTDRGLAHLSHLVAL 981
Query: 255 KVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS-FTG 311
+ L+LG +ITD L HL L NL+ LNL+ C + D GL +L+ L L+ +NL+
Sbjct: 982 QHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQHLNLNCCVC 1041
Query: 312 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 369
++D L L+ L +L+ LNL + +T GLA LT L L +L+L + + D+G +L
Sbjct: 1042 LTDDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLT 1101
Query: 370 NFKNLRSLEICG-GGLTDAGVKHIKDLSS 397
+L+ L++ T +G+ H K L++
Sbjct: 1102 RLASLKHLDLSECPYFTISGLAHFKALAA 1130
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 151/433 (34%), Positives = 222/433 (51%), Gaps = 36/433 (8%)
Query: 25 LEAFRDCALQDLCLGQYPGVND--KWMDVIASQ-GSSLLSVDLSG-SDVTDSGLIHLKDC 80
L+ + +CA + L Q + + +++++ +++ + S+D S + +TD+ L+ LKDC
Sbjct: 719 LKNYLECAAVSVLLNQISELTEFEEFLNLFSNEIEGGIESLDFSNNAYLTDAHLLALKDC 778
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
NL+ L + C +D GL HL L L L IT G+ + L+ L LDL
Sbjct: 779 KNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCYKITDSGLAHLSRLVALQHLDLGG 838
Query: 141 CTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
C I GL L L+ L+ LN+ C C+TD + LS L L+ L + C K+TD G+A
Sbjct: 839 CYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLDLDRCWKITDRGLA 898
Query: 199 YLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV 256
+L L L LNL C +T + L LS L SL +L+L C +L+D G S + +L+
Sbjct: 899 HLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQY 958
Query: 257 LNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFT-GIS 313
LNL N +TD L HL L L+ L+L C I D GL +L+ L NL+ +NL+ ++
Sbjct: 959 LNLNRCNNLTDRGLAHLSHLVALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLT 1018
Query: 314 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
D L L+ L +L+ LNL+ +TD GLA L+ L L HL
Sbjct: 1019 DRGLAHLSRLVTLQHLNLNCCVCLTDDGLAYLSPLVALRHL------------------- 1059
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-S 431
NLRS + LT AG+ H+ L +L LNLS +L D L ++ L L L++S
Sbjct: 1060 NLRSCD----NLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECP 1115
Query: 432 RITSAGLRHLKPL 444
T +GL H K L
Sbjct: 1116 YFTISGLAHFKAL 1128
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 188/370 (50%), Gaps = 43/370 (11%)
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGL 154
+GG+E SL F N +T + A NL L L C GL +L L
Sbjct: 753 EGGIE---------SLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPL 803
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEG 213
+ L+ L++ C ITDS + LS L L+ L + C ++TDSG+ YL L L LNL
Sbjct: 804 VALQHLDLGGCYKITDSGLAHLSRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNR 863
Query: 214 CP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLV 270
C +T L LS L +L YL+L+RC +++D G S + +L+ LNLG N +TD L
Sbjct: 864 CVCLTDDGLAYLSHLVALQYLDLDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLA 923
Query: 271 HLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
HL LT+L+ L+L C + D GL +L+ L NL+ +NL+
Sbjct: 924 HLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLN--------------------- 962
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI--CGGGLTD 386
+TD GLA L+ L L HLDL +ITDSG A+L NL+ L + C LTD
Sbjct: 963 --RCNNLTDRGLAHLSHLVALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDN-LTD 1019
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNSRITSAGLRHLKPLK 445
G+ H+ L +L LNL+ LTD L +S L L LN+ S +TSAGL HL PL
Sbjct: 1020 RGLAHLSRLVTLQHLNLNCCVCLTDDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLI 1079
Query: 446 NLRSLTLESC 455
L+ L L C
Sbjct: 1080 ALQYLNLSYC 1089
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 127/342 (37%), Positives = 179/342 (52%), Gaps = 12/342 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+ TD+GL HL LQ LD C +I+D GL +L L L L+ +T G+
Sbjct: 226 NFTDAGLAHLSRLVALQHLDLGGCYKITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYL 285
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L+ L LDL C +I GL +L L+ L+ LN+ CN +TDS + LS LT+LK L
Sbjct: 286 SHLVALQHLDLGECYKITDSGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLD 345
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+ C+K+TDSG+A+L L L LNL C +T L LS L +L YL+L C +L+
Sbjct: 346 LRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSHLSHLVALQYLDLGLCKKLTSS 405
Query: 244 GCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTN 301
G S + +L+ L+L EITD L HL L L+ LNL+ C + D+GL L+ L
Sbjct: 406 GLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHLNLNCCACLTDDGLAYLSPLVA 465
Query: 302 LESINLSFTG-ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-A 358
L +NL G ++ L L L +L+ LNL + D GL LT L L HLDL
Sbjct: 466 LRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECP 525
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
TDSG A+ + C + G +H++D S++ +
Sbjct: 526 YFTDSGLAHFTALATSLTHFYCW---SQVGSEHLEDESNIPV 564
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 174/310 (56%), Gaps = 12/310 (3%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC- 214
+ESL+ +TD+ + L NLK L++ C TD+G+A+L L L L+L GC
Sbjct: 191 IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCY 250
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHL 272
+T + L LS L +L +LNLN C L+DDG S + +L+ L+LG +ITD L HL
Sbjct: 251 KITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHL 310
Query: 273 KGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLN 330
L L+ LNL C + D GL +L+ LT+L+ ++L ++D L L+ L +L+ LN
Sbjct: 311 SSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLN 370
Query: 331 LD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI--CGGGLTD 386
L+ +TD GL+ L+ L L +LDL ++T SG A+L L+ L++ CG +TD
Sbjct: 371 LNRCYNLTDRGLSHLSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGE-ITD 429
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLK 445
G+ H+ L +L LNL+ LTD L +S L L LN+ +TSAGL HL PL
Sbjct: 430 RGLAHLSRLVALQHLNLNCCACLTDDGLAYLSPLVALRHLNLRCCGNLTSAGLAHLTPLI 489
Query: 446 NLRSLTLESC 455
L+ L L C
Sbjct: 490 ALQYLNLSYC 499
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 126/222 (56%), Gaps = 7/222 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TDSGL HL ++L+ LD C +++D GL HL L NL L+ R N +T +G+
Sbjct: 915 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCNNLTDRGLAH 974
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ L+ L LDL C +I GL +L L+ L+ LN+ C+ +TD + LS L L+ L
Sbjct: 975 LSHLVALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQHL 1034
Query: 186 QISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
++C +TD G+AYL L L LNL C +T+A L L+ L +L YLNL+ C L+D
Sbjct: 1035 NLNCCVCLTDDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYCDSLND 1094
Query: 243 DGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNL 283
+G +++ SLK L+L T L H K L SLNL
Sbjct: 1095 NGLTHLTRLASLKHLDLSECPYFTISGLAHFKALA--ASLNL 1134
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 138/258 (53%), Gaps = 10/258 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TDSGL HL ++L+ LD C +++D GL HL L NL L+ R +T +G+
Sbjct: 325 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSH 384
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ L+ L LDL C ++ GL +L L+ L+ L++ C ITD + LS L L+ L
Sbjct: 385 LSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHL 444
Query: 186 QISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSD 242
++C +TD G+AYL L L LNL C +T+A L L+ L +L YLNL+ C L+D
Sbjct: 445 NLNCCACLTDDGLAYLSPLVALRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYCDSLND 504
Query: 243 DGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGL-TNLESL----NLDSCGIGDEGLVNL 296
+G +++ SLK L+L TD L H L T+L + S + DE + +
Sbjct: 505 NGLTHLTRLASLKHLDLSECPYFTDSGLAHFTALATSLTHFYCWSQVGSEHLEDESNIPV 564
Query: 297 TGLTNLESINLSFTGISD 314
L LE + S T + +
Sbjct: 565 NPLAGLEEVAPSTTQLPN 582
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 123/238 (51%), Gaps = 8/238 (3%)
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 293
N L+D +LKVL L TD L HL L L+ L+L C I D GL
Sbjct: 763 NNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCYKITDSGL 822
Query: 294 VNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLT 351
+L+ L L+ ++L I+D L L+ L +L+ LNL+ +TD GLA L+ L L
Sbjct: 823 AHLSRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQ 882
Query: 352 HLDLFGA-RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
+LDL +ITD G A+L + L+ L + C LTD+G+ H+ L+SL L+L L
Sbjct: 883 YLDLDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKL 942
Query: 410 TDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 465
TD L +S L L LN++ + +T GL HL L L+ L L C K+T + + L
Sbjct: 943 TDSGLAHLSLLVNLQYLNLNRCNNLTDRGLAHLSHLVALQHLDLGECYKITDSGLAHL 1000
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 108/199 (54%), Gaps = 6/199 (3%)
Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLA 321
+TD L+ LK NL+ L L C D GL +L+ L L+ ++L I+D L L+
Sbjct: 202 LTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCYKITDSGLTYLS 261
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI 379
L +L+ LNL+ +TD GLA L+ L L HLDL +ITDSG A+L + L+ L +
Sbjct: 262 RLVALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHLSSLLALQHLNL 321
Query: 380 -CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAG 437
C LTD+G+ H+ L+SL L+L LTD L +S L L LN++ +T G
Sbjct: 322 GCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRG 381
Query: 438 LRHLKPLKNLRSLTLESCK 456
L HL L L+ L L CK
Sbjct: 382 LSHLSHLVALQYLDLGLCK 400
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S ++T +GL HL LQ L+ ++C ++D GL HL L++L L T G+
Sbjct: 1063 SCDNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECPYFTISGL 1122
Query: 125 KAFAGLINLVKLDLER 140
F L + L + R
Sbjct: 1123 AHFKALAASLNLKIIR 1138
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 368 LRNFKNLRSLEICGG----------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
F NL S EI GG LTDA + +KD +L +L L + N TD L +
Sbjct: 176 FEEFLNLFSNEIEGGIESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHL 235
Query: 418 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
S L L L++ +IT +GL +L L L+ L L C +D
Sbjct: 236 SRLVALQHLDLGGCYKITDSGLTYLSRLVALQHLNLNCCVCLTDD 280
>gi|149175912|ref|ZP_01854530.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148845359|gb|EDL59704.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 495
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 144/470 (30%), Positives = 237/470 (50%), Gaps = 17/470 (3%)
Query: 3 PRDISQQIFNE----LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSS 58
PRD + Q + ++++ T+ S D + + L + P V+D + V S+ +
Sbjct: 21 PRDKAIQAIRDAGGKVIFAPG-TDESTGNLGDKTVSMVMLNEIP-VDDSIL-VHVSKLTE 77
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
+ S+ + G+++TD GL L+D LQSL + QISD G++ L + L L+
Sbjct: 78 VTSLWIIGTEITDQGLTLLRDLQGLQSL-YITNNQISDAGIQQLPQVK-LVELTLG-GTK 134
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + +K F+ +L L++ + GL + KLE L + ITD M+ + G
Sbjct: 135 ITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLYLHETQ-ITDEGMQQIQG 193
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NLKSL ++ +++TDSG+ L+ L +L L L +T A L L L L L L+
Sbjct: 194 LKNLKSLMLNETEITDSGLTALRNLDQLEELFLNETKITGAGLKKLERLTRLSKLILSET 253
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++D + ++ +LK L L ++TD+ L + +LE L++ + I D GL+ L
Sbjct: 254 DITDADIKYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNNQITDAGLIYL-- 311
Query: 299 LTN---LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L N SINLS I+D L L +L+L ++TD GL LTS+ L L L
Sbjct: 312 LQNGKQWSSINLSGNQITDAGLSILGKSHIELTLDLSNTEVTDAGLKYLTSMNMLFGLSL 371
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+I+D G L L+S+++ G +TD ++ IK S + +L L + LTD
Sbjct: 372 NNCQISDQGVQTLMELPALKSIQLNGTDITDCSLEIIKTKSDMLVLYLD-DTKLTDAGFS 430
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ GLTGL L+++N+ +T A L+ + L L L+ V+ +++L
Sbjct: 431 QLQGLTGLQILSLNNTAVTDASLKFFNKMTKLFELNLKQTAVSDAAVQKL 480
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 3/304 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ DS + +S LT + SL I +++TD G+ L+ LQ L L + ++ A + L +
Sbjct: 64 VDDSILVHVSKLTEVTSLWIIGTEITDQGLTLLRDLQGLQSLYITNNQISDAGIQQLPQV 123
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L L +++D+ + FS L LN+G ++D L ++ LE L L
Sbjct: 124 -KLVELTLGGTKITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLYLHETQ 182
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
I DEG+ + GL NL+S+ L+ T I+D L L L L+ L L+ +IT GL L L
Sbjct: 183 ITDEGMQQIQGLKNLKSLMLNETEITDSGLTALRNLDQLEELFLNETKITGAGLKKLERL 242
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
T L+ L L ITD+ YL+ L+ L + LTD G+ I D SL +L++S N
Sbjct: 243 TRLSKLILSETDITDADIKYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNN- 301
Query: 408 NLTDKTL-ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+TD L L+ S+N+S ++IT AGL L +L L + +VT +K L
Sbjct: 302 QITDAGLIYLLQNGKQWSSINLSGNQITDAGLSILGKSHIELTLDLSNTEVTDAGLKYLT 361
Query: 467 SRDL 470
S ++
Sbjct: 362 SMNM 365
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 6/230 (2%)
Query: 246 EKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
E +G V + NEI D LVH+ LT + SL + I D+GL L L L+
Sbjct: 44 ESTGNLGDKTVSMVMLNEIPVDDSILVHVSKLTEVTSLWIIGTEITDQGLTLLRDLQGLQ 103
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
S+ ++ ISD +++L + L L L +ITD L ++ + L L++ ++D
Sbjct: 104 SLYITNNQISDAGIQQLPQV-KLVELTLGGTKITDESLKHFSNSSDLNTLNVGKTAVSDR 162
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G Y+ FK L L + +TD G++ I+ L +L L L++ +TD L + L L
Sbjct: 163 GLQYVSQFKKLERLYLHETQITDEGMQQIQGLKNLKSLMLNE-TEITDSGLTALRNLDQL 221
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
L ++ ++IT AGL+ L+ L L L L +T DIK L ++LP L
Sbjct: 222 EELFLNETKITGAGLKKLERLTRLSKLILSETDITDADIKYL--KELPAL 269
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 7/233 (3%)
Query: 20 LTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
+T+ ++ ++ AL+ L L Q +D ++ SL +D+S + +TD+GLI+L
Sbjct: 255 ITDADIKYLKELPALKRLYLDQTQLTDDGLSQIV--DFPSLEMLDVSNNQITDAGLIYLL 312
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
++ S++ + QI+D GL L G S++ N +T G+K + L L
Sbjct: 313 QNGKQWSSINLSGN-QITDAGLSIL-GKSHIELTLDLSNTEVTDAGLKYLTSMNMLFGLS 370
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
L C G+ L L L+S+ + + ITD ++ + +++ L + +K+TD+G
Sbjct: 371 LNNCQISDQGVQTLMELPALKSIQLNGTD-ITDCSLEIIKTKSDMLVLYLDDTKLTDAGF 429
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+ L+GL L +L+L VT A L + + LF LNL + +SD +K K
Sbjct: 430 SQLQGLTGLQILSLNNTAVTDASLKFFNKMTKLFELNLKQTAVSDAAVQKLLK 482
>gi|406835528|ref|ZP_11095122.1| hypothetical protein SpalD1_27934 [Schlesneria paludicola DSM
18645]
Length = 590
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 146/496 (29%), Positives = 232/496 (46%), Gaps = 59/496 (11%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L+ F D L DL L P + D+ + +A +SL++++LS + +TD GL HLK +NL+
Sbjct: 71 LKPFSD--LSDLDLHAIP-ILDRDLKELADL-TSLVNLNLSDTRITDRGLFHLKRLTNLE 126
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
++ I+D G++ L L L+ + IT +G++ + NL L L+
Sbjct: 127 TVWLQNT-SITDAGIKELASFERLAELNLS-DTRITDRGLRELSDFQNLTTLWLQNVEMT 184
Query: 145 HGGLVNLKGLMKLESLNIKWCNC-----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
GL LK L + +L++ N ITD ++ LS L L+ L ++ + DSG+
Sbjct: 185 DDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQLSDLPELRHLYLANIPIADSGLTS 244
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L+ L+ LT+L+L G +T L+ L L L L + Q+SD G + +L L +
Sbjct: 245 LRRLKHLTVLDLRGTQITDEGLNELRGLHELETFKLTKTQISDAGLTALKGLKNLTTLLI 304
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD----- 314
G N+IT L L L L++L+L + D L L+ + L + LS T I+D
Sbjct: 305 GSNQITGTGLQELTNLDQLKTLDLSDTQVTDVELNRLSSIRTLTDLRLSDTPITDVGLRS 364
Query: 315 -----------------GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
+ +L L L L+L ITDTGL L L LT L+L
Sbjct: 365 LRELKRLRRLTLGGTQITDISELNHLRDLTHLDLRVTPITDTGLHGLGDLKHLTSLNLDA 424
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN----------LSQNC 407
++TD+ + L+ +L+ L + ++ G K ++ L LT+L L + C
Sbjct: 425 TQVTDASLSELKCLVHLKELSLSRTAISGLGFKSLERLEQLTVLRCDRCLIADEGLREIC 484
Query: 408 NL-------------TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
L TD L + L GL L + N+ +T AG+ L L LR+L +
Sbjct: 485 TLKSLKTLVISGTRVTDDGLAELHQLEGLQELRIENNALTDAGMSELMVLGKLRTLGISH 544
Query: 455 CKVTA---NDIKRLQS 467
K+T +DIKRL++
Sbjct: 545 NKITDTSLSDIKRLKN 560
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 176/377 (46%), Gaps = 32/377 (8%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL L D L+ L + I I+D GL LR L +LT L R IT +G+
Sbjct: 213 ITDEGLEQLSDLPELRHL-YLANIPIADSGLTSLRRLKHLTVLDLR-GTQITDEGLNELR 270
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL L L + GL LKGL L +L I N IT + ++ L+ L LK+L +S
Sbjct: 271 GLHELETFKLTKTQISDAGLTALKGLKNLTTLLI-GSNQITGTGLQELTNLDQLKTLDLS 329
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC----------------------LDSLSA 226
++VTD + L ++ LT L L P+T + L+
Sbjct: 330 DTQVTDVELNRLSSIRTLTDLRLSDTPITDVGLRSLRELKRLRRLTLGGTQITDISELNH 389
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L L +L+L ++D G + L LNL ++TD L LK L +L+ L+L
Sbjct: 390 LRDLTHLDLRVTPITDTGLHGLGDLKHLTSLNLDATQVTDASLSELKCLVHLKELSLSRT 449
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
I G +L L L + I+D LR++ L SLK+L + ++TD GLA L
Sbjct: 450 AISGLGFKSLERLEQLTVLRCDRCLIADEGLREICTLKSLKTLVISGTRVTDDGLAELHQ 509
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L GL L + +TD+G + L LR+L I +TD + IK L +LT+L + +N
Sbjct: 510 LEGLQELRIENNALTDAGMSELMVLGKLRTLGISHNKITDTSLSDIKRLKNLTMLRI-RN 568
Query: 407 CNLTDKTLELISGLTGL 423
+TD SGL G
Sbjct: 569 TEITD------SGLNGF 579
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 137/264 (51%), Gaps = 7/264 (2%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
E + L L L L+L+ + D ++ + + SL LNL ITD L H
Sbjct: 59 EAHKFSEKHLHLLKPFSDLSDLDLHAIPILDRDLKELADLTSLVNLNLSDTRITDRGLFH 118
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
LK LTNLE++ L + I D G+ L L +NLS T I+D LR+L+ +L +L L
Sbjct: 119 LKRLTNLETVWLQNTSITDAGIKELASFERLAELNLSDTRITDRGLRELSDFQNLTTLWL 178
Query: 332 DARQITDTGLAALTSLTGLTHLDLFG------ARITDSGAAYLRNFKNLRSLEICGGGLT 385
++TD GL AL L +T LDL RITD G L + LR L + +
Sbjct: 179 QNVEMTDDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQLSDLPELRHLYLANIPIA 238
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
D+G+ ++ L LT+L+L + +TD+ L + GL L + ++ ++I+ AGL LK LK
Sbjct: 239 DSGLTSLRRLKHLTVLDL-RGTQITDEGLNELRGLHELETFKLTKTQISDAGLTALKGLK 297
Query: 446 NLRSLTLESCKVTANDIKRLQSRD 469
NL +L + S ++T ++ L + D
Sbjct: 298 NLTTLLIGSNQITGTGLQELTNLD 321
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 173/379 (45%), Gaps = 31/379 (8%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+ LE D L+ L L P + D + + + L +DL G+ +TD GL L+
Sbjct: 213 ITDEGLEQLSDLPELRHLYLANIP-IADSGLTSL-RRLKHLTVLDLRGTQITDEGLNELR 270
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
L++ QISD GL L+GL NLT+L +N IT G++ L L LDL
Sbjct: 271 GLHELETFKLTKT-QISDAGLTALKGLKNLTTLLIG-SNQITGTGLQELTNLDQLKTLDL 328
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITD----------------------SDMKPL 176
L L + L L + ITD +D+ L
Sbjct: 329 SDTQVTDVELNRLSSIRTLTDLRLS-DTPITDVGLRSLRELKRLRRLTLGGTQITDISEL 387
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L +L L + + +TD+G+ L L+ LT LNL+ VT A L L L L L+L+
Sbjct: 388 NHLRDLTHLDLRVTPITDTGLHGLGDLKHLTSLNLDATQVTDASLSELKCLVHLKELSLS 447
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R +S G + ++ L VL I DE L + L +L++L + + D+GL L
Sbjct: 448 RTAISGLGFKSLERLEQLTVLRCDRCLIADEGLREICTLKSLKTLVISGTRVTDDGLAEL 507
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L L+ + + ++D + +L L L++L + +ITDT L+ + L LT L +
Sbjct: 508 HQLEGLQELRIENNALTDAGMSELMVLGKLRTLGISHNKITDTSLSDIKRLKNLTMLRIR 567
Query: 357 GARITDSGAAYLRNFKNLR 375
ITDSG L FK+ R
Sbjct: 568 NTEITDSG---LNGFKDAR 583
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 127/241 (52%), Gaps = 10/241 (4%)
Query: 245 CEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
E+ ++ V+ + F E +++ L LK ++L L+L + I D L L LT+
Sbjct: 41 IERDAEAPDHPVIGIAFEEAHKFSEKHLHLLKPFSDLSDLDLHAIPILDRDLKELADLTS 100
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L ++NLS T I+D L L L++L+++ L ITD G+ L S L L+L RIT
Sbjct: 101 LVNLNLSDTRITDRGLFHLKRLTNLETVWLQNTSITDAGIKELASFERLAELNLSDTRIT 160
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS-----QNCNLTDKTLEL 416
D G L +F+NL +L + +TD G++ +K L ++T L+LS +TD+ LE
Sbjct: 161 DRGLRELSDFQNLTTLWLQNVEMTDDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQ 220
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
+S L L L ++N I +GL L+ LK+L L L ++T + L R L L +F
Sbjct: 221 LSDLPELRHLYLANIPIADSGLTSLRRLKHLTVLDLRGTQITDEGLNEL--RGLHELETF 278
Query: 477 R 477
+
Sbjct: 279 K 279
>gi|384245058|gb|EIE18554.1| L domain-like protein [Coccomyxa subellipsoidea C-169]
Length = 731
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 145/417 (34%), Positives = 219/417 (52%), Gaps = 36/417 (8%)
Query: 57 SSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+SL +DLSGS D+TD+GL+HL S L++L C+++S GL R L + LS R
Sbjct: 223 TSLTHLDLSGSHDITDAGLLHLGSLSRLRTLVLWNCMRVSVDGLAVFRQLPAVADLSLRG 282
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMK 174
++ + A L L +LDL C R G L KGL L+ LN+K C I D+ ++
Sbjct: 283 CAQLSDALCGSVAHLEQLTRLDLRACERFTGAELREWKGLSLLQELNLKGCYKIEDAGLQ 342
Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
LS LT+L S+ + C ++T G+A L GL ++ +NL+GC ++ L+ L++L L L
Sbjct: 343 GLSLLTSLTSINMQECWQITAQGLAALSGLSRMMDVNLQGCRKISS-LEPLASLSRLAAL 401
Query: 234 NLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGD 290
NL C L D S++ SL+ L+L G +T L+ L LT L +L L C GI
Sbjct: 402 NLRNCDGLGDSSLGPLSRLVSLRSLDLSGCTHLTGRGLLPLSSLTGLTALKLQHCAGIRR 461
Query: 291 EG-LVNLTGLTNLESINLSFTGISDGS-LRKLAGLSSLKSLNLDA-RQIT--DTGLAALT 345
L L+ LT L ++NLS +G+ + LA L+ L++L+LD R +T D GL ALT
Sbjct: 462 SADLAPLSLLTALSTLNLSGCSQEEGAGISSLATLTCLRALSLDGWRHVTFIDDGLMALT 521
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
SL G+ L+L G LTD G+ I ++SLT +NL
Sbjct: 522 SLRGVASLNLQGCT-----------------------SLTDVGLAAIGHMTSLTNVNLQD 558
Query: 406 NCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+T + +G+ L SL++ N S ++ AG + + +LR+L L++C +D
Sbjct: 559 CRQITGEGFAGWAGMAHLTSLSLQNASMVSDAGCCAIARITSLRTLNLKNCPALTDD 615
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 132/397 (33%), Positives = 209/397 (52%), Gaps = 39/397 (9%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
T + L K S LQ L+ C +I D GL+ L L++LTS++ + ITAQG+ A +G
Sbjct: 312 TGAELREWKGLSLLQELNLKGCYKIEDAGLQGLSLLTSLTSINMQECWQITAQGLAALSG 371
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L ++ ++L+ C +I L L L +L +LN++ C+ + DS + PLS L +L+SL +S
Sbjct: 372 LSRMMDVNLQGCRKI-SSLEPLASLSRLAALNLRNCDGLGDSSLGPLSRLVSLRSLDLSG 430
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC----------PVT-----------------AACL 221
C+ +T G+ L L LT L L+ C P++ A +
Sbjct: 431 CTHLTGRGLLPLSSLTGLTALKLQHCAGIRRSADLAPLSLLTALSTLNLSGCSQEEGAGI 490
Query: 222 DSLSALGSLFYLNLN---RCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTN 277
SL+ L L L+L+ DDG + + + LNL G +TD L + +T+
Sbjct: 491 SSLATLTCLRALSLDGWRHVTFIDDGLMALTSLRGVASLNLQGCTSLTDVGLAAIGHMTS 550
Query: 278 LESLNLDSC-GIGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DAR 334
L ++NL C I EG G+ +L S++L + + +SD +A ++SL++LNL +
Sbjct: 551 LTNVNLQDCRQITGEGFAGWAGMAHLTSLSLQNASMVSDAGCCAIARITSLRTLNLKNCP 610
Query: 335 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 392
+TD LAALT L L HL L G +++D+ A+ +L+ LE LTDAG+ +
Sbjct: 611 ALTDDCLAALTPLERLCHLRLQGNQQLSDAALAHCARMPSLQHLETSNCWHLTDAGLTRL 670
Query: 393 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNV 428
L++L L+LS +TD+ +E L+ LT LV+LNV
Sbjct: 671 TALTTLAHLDLSYCWQVTDRGVEHLVKSLTTLVTLNV 707
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 172/366 (46%), Gaps = 48/366 (13%)
Query: 133 LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
L +LD+ C R+ + L NL+ L L S+ + C +TD + LS L+ L SL +S C
Sbjct: 96 LQQLDMSACRRVSNDELANLRHLPNLTSVVLAGCEDVTDEGLLHLSHLSRLASLNLSNCC 155
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPV-----TAACLDSLSALGSLFYLNLNR-CQLSDDG 244
KVTD G+ L L++L LNL GC AA L L +L +R +SD
Sbjct: 156 KVTDGGLLALAALRQLGSLNLSGCVSLSERGLAAIAARLRRLHTLKLGGTSRVATISDAS 215
Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNL 302
+ + SL L+L G ++ITD L+HL L+ L +L L +C + +GL L +
Sbjct: 216 VAAIAGLTSLTHLDLSGSHDITDAGLLHLGSLSRLRTLVLWNCMRVSVDGLAVFRQLPAV 275
Query: 303 ESINL-----------------------------SFTGISDGSLRKLAGLSSLKSLNLDA 333
++L FTG LR+ GLS L+ LNL
Sbjct: 276 ADLSLRGCAQLSDALCGSVAHLEQLTRLDLRACERFTG---AELREWKGLSLLQELNLKG 332
Query: 334 -RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+I D GL L+ LT LT +++ +IT G A L + + + G + ++
Sbjct: 333 CYKIEDAGLQGLSLLTSLTSINMQECWQITAQGLAALSGLSRMMDVNL-QGCRKISSLEP 391
Query: 392 IKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRS 449
+ LS L LNL +NC+ L D +L +S L L SL++S + +T GL L L L +
Sbjct: 392 LASLSRLAALNL-RNCDGLGDSSLGPLSRLVSLRSLDLSGCTHLTGRGLLPLSSLTGLTA 450
Query: 450 LTLESC 455
L L+ C
Sbjct: 451 LKLQHC 456
>gi|46446665|ref|YP_008030.1| hypothetical protein pc1031 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400306|emb|CAF23755.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 553
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 185/339 (54%), Gaps = 12/339 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LKDC NL+ L C ++D GL HL L+ L L +T G+
Sbjct: 207 LTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLSYCENLTDDGLAHLT 266
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C + GL +L L L+ L + C +TD+ + L+ LT L+ L +
Sbjct: 267 PLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTALQHLDL 326
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S K+TD+G+A+LK L L L+L C +T A + L L +L +L+L++ + L+D G
Sbjct: 327 SQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAG 386
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNL 302
+ + L+ LNL +TD L HL LT L+ LNL SC + D GLV+L LT L
Sbjct: 387 LAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTAL 446
Query: 303 ESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGAR 359
+ + LS + ++D L LA L++L+ LNL + R++TD GLA L SL LTHLDL +
Sbjct: 447 QHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSWCKN 506
Query: 360 ITDSGAAYLRNFKNLRS--LEICGGGLTDAGVKHIKDLS 396
TD G +L L+ L +C LTD G+ K L+
Sbjct: 507 FTDEGLTHLTPLTGLQYLVLSLC-YHLTDDGLARFKTLA 544
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 124/351 (35%), Positives = 188/351 (53%), Gaps = 11/351 (3%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
L + +L+F N +T + A NL L ++C + GL +L L L+ L++
Sbjct: 193 LKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLS 252
Query: 164 WCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACL 221
+C +TD + L+ LT L+ L +S C +TD G+A+L L+ L L L C +T A L
Sbjct: 253 YCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGL 312
Query: 222 DSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE 279
L+ L +L +L+L++ +L+D G + +L+ L+L +TD + HLK LT L+
Sbjct: 313 THLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQ 372
Query: 280 SLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 336
L+L + D GL +LT L L+ +NLS ++D L LA L++L+ LNL + +
Sbjct: 373 HLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNL 432
Query: 337 TDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 394
TD GL L LT L HL L +TD+G A+L L+ L + LTD G+ H+K
Sbjct: 433 TDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKS 492
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPL 444
L +LT L+LS N TD+ L ++ LTGL L +S +T GL K L
Sbjct: 493 LVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTL 543
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 184/369 (49%), Gaps = 33/369 (8%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A +DC L+ L + GV D + + + ++L +DLS ++TD GL HL
Sbjct: 207 LTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHL-TPLTALQRLDLSYCENLTDDGLAHL 265
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ LQ LD ++C ++D GL HL L L L+ +T G+ L L LD
Sbjct: 266 TPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTALQHLD 325
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDS 195
L + ++ GL +LK L L+ L++ C +TD+ + L LT L+ L +S + +TD+
Sbjct: 326 LSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDA 385
Query: 196 GIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGS 253
G+A+L L L LNL C +T A L L+ L +L +LNL+ C L+D G + +
Sbjct: 386 GLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTA 445
Query: 254 LKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTG 311
L+ L L + +TD L HL LT L+ LNL +C + D+GL +L L L ++LS+
Sbjct: 446 LQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSW-- 503
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRN 370
+ TD GL LT LTGL +L L +TD G A +
Sbjct: 504 ---------------------CKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKT 542
Query: 371 FKNLRSLEI 379
+L+I
Sbjct: 543 LAVSHNLKI 551
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 168/319 (52%), Gaps = 31/319 (9%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK L+ L+ K C +TD+ + L+ LT L+ L +S C +TD G+A+L L
Sbjct: 210 AHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLSYCENLTDDGLAHLTPLT 269
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-F 261
L L+L C +T L L+ L +L L L C+ L+D G + + +L+ L+L +
Sbjct: 270 ALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTALQHLDLSQY 329
Query: 262 NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLS-FTGISDGSLRK 319
++TD L HLK LT L+ L+L C + D G+ +L LT L+ ++LS + ++D L
Sbjct: 330 WKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAH 389
Query: 320 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
L L L+ LNL A + +TD GLA L LT L HL+L + Y
Sbjct: 390 LTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNL--------SSCY----------- 430
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAG 437
LTDAG+ H+ L++L L LS NLTD L ++ LT L LN+SN R +T G
Sbjct: 431 ----NLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDG 486
Query: 438 LRHLKPLKNLRSLTLESCK 456
L HLK L L L L CK
Sbjct: 487 LAHLKSLVTLTHLDLSWCK 505
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 169/323 (52%), Gaps = 32/323 (9%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 212
L K+E+LN +TD+ + L NLK L C VTD+G+A+L L L L+L
Sbjct: 193 LKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLS 252
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
C L+DDG + + +L+ L+L + E +TD+ L H
Sbjct: 253 YCE-----------------------NLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAH 289
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 329
L L L+ L L +C + D GL +LT LT L+ ++LS + ++D L L L++L+ L
Sbjct: 290 LAPLKALQRLALTNCKNLTDAGLTHLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHL 349
Query: 330 NLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTD 386
+L +TD G+A L LT L HLDL R +TD+G A+L L+ L + LTD
Sbjct: 350 DLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTD 409
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLK 445
AG+ H+ L++L LNLS NLTD L + LT L L +S+ +T GL HL PL
Sbjct: 410 AGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLT 469
Query: 446 NLRSLTLESC-KVTANDIKRLQS 467
L+ L L +C K+T + + L+S
Sbjct: 470 ALQHLNLSNCRKLTDDGLAHLKS 492
>gi|325182005|emb|CCA16458.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 708
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 137/424 (32%), Positives = 206/424 (48%), Gaps = 35/424 (8%)
Query: 59 LLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L+S++L+G +TD L L+ LQ+L + C I++ GL+HL GL L L R
Sbjct: 313 LISLNLTGCRLITDKTLYSLRHLFRLQNLHLSGCKWITEKGLQHLNGLFGLKRLYLARCV 372
Query: 118 AITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ Q + F NLV+LDL C+ L L ++ SL +K C+ IT + L
Sbjct: 373 NVSNQAFRFFPTSFPNLVELDLSHCSISDIALHFTGRLREIHSLMLKGCSRITTKGLSHL 432
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L+ L + C V +G++ K +L +L L A L+ + +L L+L
Sbjct: 433 GSLSKLRRLDVRYCKHV--AGLS--KEWTQLDMLKLACTEFKEADASILATMKTLHELDL 488
Query: 236 NRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGL 293
RC L GC F S + SL L + +TDE L+ L K L L+ L++ + D G
Sbjct: 489 -RCCLVAKGCFSFVSHLNSLVRLCVAETALTDESLIMLCKSLEKLQMLDVSCTEVTDSGT 547
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ + L L ++L GI++ SL ++ L L LNL A +TD G+ AL L L L
Sbjct: 548 MEIEMLGELSELHLDTPGITNRSLERVGKLKKLARLNLFAASVTDEGVEALKRLDKLQDL 607
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
D IC GG+ GVK + L L LNLSQN + ++
Sbjct: 608 D------------------------ICSGGVGHRGVKALSQLKRLRSLNLSQNKEIRSQS 643
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+ + LT L LN+SN+ ITS+ L +L LK L SL++ + ++ I LQ +LP+L
Sbjct: 644 VVHLEALTKLRFLNLSNTGITSSCLHNLFALKELESLSVYGVVLESSQIDELQE-NLPHL 702
Query: 474 VSFR 477
R
Sbjct: 703 KVLR 706
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 165/350 (47%), Gaps = 11/350 (3%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L + V+++ + +L+ +DLS ++D L + SL C
Sbjct: 363 LKRLYLARCVNVSNQAFRFFPTSFPNLVELDLSHCSISDIALHFTGRLREIHSLMLKGCS 422
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I+ GL HL LS L L R + G+ ++++KL CT ++
Sbjct: 423 RITTKGLSHLGSLSKLRRLDVRYCKHVA--GLSKEWTQLDMLKLA---CTEFKEADASIL 477
Query: 153 GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLN 210
MK L L+++ C + +S L +L L ++ + +TD + L K L+KL +L+
Sbjct: 478 ATMKTLHELDLR-CCLVAKGCFSFVSHLNSLVRLCVAETALTDESLIMLCKSLEKLQMLD 536
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ VT + + LG L L+L+ +++ E+ K+ L LNL +TDE +
Sbjct: 537 VSCTEVTDSGTMEIEMLGELSELHLDTPGITNRSLERVGKLKKLARLNLFAASVTDEGVE 596
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSL 329
LK L L+ L++ S G+G G+ L+ L L S+NLS I S+ L L+ L+ L
Sbjct: 597 ALKRLDKLQDLDICSGGVGHRGVKALSQLKRLRSLNLSQNKEIRSQSVVHLEALTKLRFL 656
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
NL IT + L L +L L L ++G + S L+ +NL L++
Sbjct: 657 NLSNTGITSSCLHNLFALKELESLSVYGVVLESSQIDELQ--ENLPHLKV 704
>gi|397646482|gb|EJK77289.1| hypothetical protein THAOC_00890 [Thalassiosira oceanica]
Length = 702
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 187/388 (48%), Gaps = 53/388 (13%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ IT +GM AF+ L + L C R+ +VN+ L SLN+ C C+TD ++
Sbjct: 293 HGITGKGMLAFSRSPRLHTISLANCRRLTDEAVVNISHCTSLTSLNVGGCRCLTDRSLEA 352
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLK-----------------GLQK------LTLLNL 211
+SGL +L+ L +S C +TD G+ +L +Q+ L L L
Sbjct: 353 MSGLLDLRRLDLSQCDLITDDGLIFLGELDLLEELSLGNKSCGMAIQQRNRSIALKTLRL 412
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDECLV 270
C +T LD L L SL L++N C LS E K+ +L L+
Sbjct: 413 ARCAITNDGLDYLEQLQSLEDLDINGCSLSSTALGESLEKLTNLNSLDAS---------- 462
Query: 271 HLKG-LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
H G L LE LNL I D + + L L S++L + +S LR LA L L SL
Sbjct: 463 HCPGILPGLEVLNLADTQISDNAMSKVAKLAGLRSLSLFYCNVSSRGLRHLASLEKLDSL 522
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
NLD+R I D G R+TD G +Y+ K L +L++ GGG+ D G
Sbjct: 523 NLDSRDIGDEGRPN---------------RVTDLGCSYIAKIKTLTTLQLAGGGVGDLGC 567
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
HI + +L LNLSQN ++T++ ++ L+ L +LN+SN+R+TS L+ L L+S
Sbjct: 568 AHIATIDALESLNLSQNESITNRGAASLAALSNLRALNLSNTRVTSNALKFFHGLSKLQS 627
Query: 450 LTLESCKVTANDIKRLQSRDLPNLVSFR 477
L L C + + I+ LQ ++P L R
Sbjct: 628 LALYGCIMEDSPIESLQD-EVPTLRCLR 654
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGS 57
LP+D+ +I L L ++ A +C L LCL GVND+++ + S GS
Sbjct: 47 LPQDVVDRIVKSLTAHAALNCTTMRALSNCELGTLCLADARGVNDEFLMALCSSGS 102
>gi|46447552|ref|YP_008917.1| hypothetical protein pc1918 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401193|emb|CAF24642.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 552
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 192/363 (52%), Gaps = 38/363 (10%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L ++C L+ L L + D + +A ++L ++L+G +TD+GL+HL
Sbjct: 206 LTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPL-TALQHLNLNGCYKLTDAGLVHL 264
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
K + LQ+LD ++C + D GL HL+ L+ L +L+ +T +G+ L L LD
Sbjct: 265 KSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTLD 324
Query: 138 LERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L C GL +L L L++L++ +C +TD + L LT L++L +S C K+ D+
Sbjct: 325 LSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDA 384
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSL 254
G+A+LK P+TA L YL LN C+ L+D G + +L
Sbjct: 385 GLAHLK-------------PLTA-----------LQYLALNSCKNLTDRGLSHLKSLMAL 420
Query: 255 KVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TG 311
+ L L G + +TD L HLK LT L++L L C + +GL +L LT L++++LS+
Sbjct: 421 QHLVLSGCDNLTDAGLAHLKPLTALQTLGLRRCQNLTGDGLAHLAPLTALQTLDLSYCKK 480
Query: 312 ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 369
+ D L L L++L++L L +TD GLA L L L HLDL + +T +G L
Sbjct: 481 LKDAGLAHLKPLTALQTLGLKWCSNLTDAGLAHLKPLAALQHLDLSYCNNLTRAG---LA 537
Query: 370 NFK 372
NFK
Sbjct: 538 NFK 540
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 126/357 (35%), Positives = 189/357 (52%), Gaps = 41/357 (11%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+ +TD+ L+ LK+C NL+ L C I+D GL HL
Sbjct: 204 AHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHL------------------------ 239
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDS---DMKPLSGLTNL 182
A L L L+L C ++ GLV+LK L L++L++ +C + D+ +KPL+ L NL
Sbjct: 240 -APLTALQHLNLNGCYKLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNL 298
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-L 240
SC +TD G+++LK L L L+L C A L L L +L L+L+ C+ L
Sbjct: 299 A--LTSCKNLTDRGLSHLKSLTALQTLDLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDL 356
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+D G + +L+ LNL + ++ D L HLK LT L+ L L+SC + D GL +L
Sbjct: 357 TDRGLSHLKSLTALQTLNLSYCKKLKDAGLAHLKPLTALQYLALNSCKNLTDRGLSHLKS 416
Query: 299 LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDL- 355
L L+ + LS ++D L L L++L++L L Q +T GLA L LT L LDL
Sbjct: 417 LMALQHLVLSGCDNLTDAGLAHLKPLTALQTLGLRRCQNLTGDGLAHLAPLTALQTLDLS 476
Query: 356 FGARITDSGAAYLRNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
+ ++ D+G A+L+ L++ L+ C LTDAG+ H+K L++L L+LS NLT
Sbjct: 477 YCKKLKDAGLAHLKPLTALQTLGLKWC-SNLTDAGLAHLKPLAALQHLDLSYCNNLT 532
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 179/310 (57%), Gaps = 10/310 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN +TD+ + L NLK L + +C +TD G+A+L L L LNL GC
Sbjct: 194 EIEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGC 253
Query: 215 -PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T A L L +L +L L+L+ C+ L D G + +L+ L L +TD L H
Sbjct: 254 YKLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSH 313
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
LK LT L++L+L C D GL +L LT L++++LS+ ++D L L L++L++L
Sbjct: 314 LKSLTALQTLDLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTL 373
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTD 386
NL +++ D GLA L LT L +L L + +TD G ++L++ L+ L + G LTD
Sbjct: 374 NLSYCKKLKDAGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTD 433
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLK 445
AG+ H+K L++L L L + NLT L ++ LT L +L++S ++ AGL HLKPL
Sbjct: 434 AGLAHLKPLTALQTLGLRRCQNLTGDGLAHLAPLTALQTLDLSYCKKLKDAGLAHLKPLT 493
Query: 446 NLRSLTLESC 455
L++L L+ C
Sbjct: 494 ALQTLGLKWC 503
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 176/321 (54%), Gaps = 12/321 (3%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK L+ L+++ C ITD + L+ LT L+ L ++ C K+TD+G+ +LK L
Sbjct: 209 AHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGLVHLKSLT 268
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF- 261
L L+L C + A L L L +L L L C+ L+D G + +L+ L+L +
Sbjct: 269 ALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTLDLSYC 328
Query: 262 NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSF-TGISDGSLRK 319
D L HL LT L++L+L C + D GL +L LT L+++NLS+ + D L
Sbjct: 329 KNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDAGLAH 388
Query: 320 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSL 377
L L++L+ L L++ + +TD GL+ L SL L HL L G +TD+G A+L+ L++L
Sbjct: 389 LKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLTALQTL 448
Query: 378 EI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRIT 434
+ C LT G+ H+ L++L L+LS L D L + LT L +L + S +T
Sbjct: 449 GLRRCQN-LTGDGLAHLAPLTALQTLDLSYCKKLKDAGLAHLKPLTALQTLGLKWCSNLT 507
Query: 435 SAGLRHLKPLKNLRSLTLESC 455
AGL HLKPL L+ L L C
Sbjct: 508 DAGLAHLKPLAALQHLDLSYC 528
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/276 (37%), Positives = 158/276 (57%), Gaps = 9/276 (3%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
+ +TD+ + LK + L +L+LE C +T L L+ L +L +LNLN C +L+D G
Sbjct: 204 AHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGLVH 263
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESI 305
+ +L+ L+L + + D LVHLK LT L++L L SC + D GL +L LT L+++
Sbjct: 264 LKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTL 323
Query: 306 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITD 362
+LS+ D L L L++L++L+L + +TD GL+ L SLT L L+L + ++ D
Sbjct: 324 DLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKD 383
Query: 363 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
+G A+L+ L+ L + LTD G+ H+K L +L L LS NLTD L + LT
Sbjct: 384 AGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLT 443
Query: 422 GLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 456
L +L + + +T GL HL PL L++L L CK
Sbjct: 444 ALQTLGLRRCQNLTGDGLAHLAPLTALQTLDLSYCK 479
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 124/226 (54%), Gaps = 28/226 (12%)
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 293
N L+D +LKVL+L ITD+ L HL LT L+ LNL+ C + D GL
Sbjct: 202 NNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGL 261
Query: 294 VNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT 351
V+L LT L++++LS+ + D L L L++L++L L + + +TD GL+ L SLT L
Sbjct: 262 VHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQ 321
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
LDL +Y +NFK DAG+ H+ L++L L+LS +LTD
Sbjct: 322 TLDL----------SYCKNFK-------------DAGLAHLPPLTALQTLDLSYCKDLTD 358
Query: 412 KTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
+ L + LT L +LN+S ++ AGL HLKPL L+ L L SCK
Sbjct: 359 RGLSHLKSLTALQTLNLSYCKKLKDAGLAHLKPLTALQYLALNSCK 404
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 5/160 (3%)
Query: 302 LESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-A 358
+E++N S ++D L L +LK L+L+A Q ITD GLA L LT L HL+L G
Sbjct: 195 IEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCY 254
Query: 359 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
++TD+G +L++ L++L++ L DAG+ H+K L++L L L+ NLTD+ L +
Sbjct: 255 KLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHL 314
Query: 418 SGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 456
LT L +L++S + AGL HL PL L++L L CK
Sbjct: 315 KSLTALQTLDLSYCKNFKDAGLAHLPPLTALQTLDLSYCK 354
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++DLS + D+GL HLK + LQ+L +C ++D GL HL+ L+ L L
Sbjct: 468 TALQTLDLSYCKKLKDAGLAHLKPLTALQTLGLKWCSNLTDAGLAHLKPLAALQHLDLSY 527
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
N +T G+ F L + L++ R
Sbjct: 528 CNNLTRAGLANFKILGASLNLEIVR 552
>gi|46446776|ref|YP_008141.1| hypothetical protein pc1142 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400417|emb|CAF23866.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 590
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 190/345 (55%), Gaps = 10/345 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L + +T++ L+ LKDC N++ L F C ++D GL HL L+ L L +T G
Sbjct: 233 LENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDCENLTDAG 292
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ L L LDL C + GLV+L L+ L+ L + C +T + + L+ LT L
Sbjct: 293 LAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAGLAHLTSLTAL 352
Query: 183 KSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-Q 239
+ L + +C +TD+G+A+L L L L+L C +T A L L+ L +L +LNL C +
Sbjct: 353 QHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLTALQHLNLCCCRK 412
Query: 240 LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
L+D G + + +L+ L+L + +TD L HL LT L LNL C + GL +LT
Sbjct: 413 LTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTGAGLAHLT 472
Query: 298 GLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 355
L L+ +NLS ++D L LA L++L+ LNL ++ TD GLA LT LT L LDL
Sbjct: 473 PLVALQHLNLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDL 532
Query: 356 FGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSL 398
G +TD+G +L L+ L++ G LTDAG++ K L++L
Sbjct: 533 IGCNNLTDAGLVHLTPLTALQYLDLIGCKNLTDAGLERFKTLAAL 577
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 128/356 (35%), Positives = 184/356 (51%), Gaps = 37/356 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E+LN +T++ + L N+K L C VTD+G+A+L L L L L C
Sbjct: 226 KIEALNFLENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDC 285
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
+T A L L+ L +L +L+L+ C L+D G + + L+ L L E +T L H
Sbjct: 286 ENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAGLAH 345
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
L LT L+ L+L +C + D GL +LT LT L+ ++LS ++D L L L++L+ L
Sbjct: 346 LTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLTALQHL 405
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTD 386
NL R++TD GLA LT LT L HLDL + +TD+G A+L L L + LT
Sbjct: 406 NLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTG 465
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-------------- 432
AG+ H+ L +L LNLS+ NLTD L ++ LT L LN+S +
Sbjct: 466 AGLAHLTPLVALQHLNLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLT 525
Query: 433 ------------ITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQS-RDLPNLV 474
+T AGL HL PL L+ L L CK +T ++R ++ LPNL
Sbjct: 526 ALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLT 581
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TD+GL+HL + LQ L+ ++C + +D GL HL L+ L SL N +T G+
Sbjct: 486 NNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTDAGLVH 545
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
L L LDL C + GL K L L +L IK
Sbjct: 546 LTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLTIK 583
>gi|168698219|ref|ZP_02730496.1| hypothetical protein GobsU_01767 [Gemmata obscuriglobus UQM 2246]
Length = 380
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 162/299 (54%), Gaps = 1/299 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD ++K L L +L S+ +S + VT++G+ L + LT L+L +T A L L+ L
Sbjct: 60 VTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKELAPL 119
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L NL+ +++D G ++ + I +L L+L EITD L L + +L +L+L
Sbjct: 120 KNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDLSDTK 179
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ D GL L L L ++ L T ++D L++LA +L L L ++TD GL L L
Sbjct: 180 VTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAPL 239
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L+ L L +TD+G L KNL +L + G +TDAGVK + +LTLL+LS
Sbjct: 240 KSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLS-GT 298
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
N+TD ++ ++ L L +S++ +T GL+ L LK L L L S K T IK Q
Sbjct: 299 NVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFLISTKTTFAGIKEFQ 357
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 150/289 (51%), Gaps = 1/289 (0%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ + +T + +K L +L +DL + GL L L +L++ ITD+ +K
Sbjct: 56 QGHRVTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLH-DTGITDAGLK 114
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ L NL + +S +KVTD+G+ L ++ LT L+L +T A L SL + L L+
Sbjct: 115 ELAPLKNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLD 174
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L+ +++D G + + + L L L E+TD L L NL L L + + D GL
Sbjct: 175 LSDTKVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLK 234
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L L +L + L T ++D L++LA L +L +LNL ++TD G+ L LT LD
Sbjct: 235 ELAPLKSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLD 294
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L G +TD+G L FKNL LE+ +TD G+K + L LT L L
Sbjct: 295 LSGTNVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFL 343
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 159/295 (53%), Gaps = 3/295 (1%)
Query: 150 NLKGLMKLESL-NIKWCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
LK L+ L+SL +I + +T++ +K L +L +L + + +TD+G+ L L+ LT
Sbjct: 64 ELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKELAPLKNLT 123
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
NL VT L L+A+ +L L+L + +++D G + + L L+L ++TD
Sbjct: 124 AFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDLSDTKVTDA 183
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L L L L +L L + + D GL L NL + L T ++D L++LA L SL
Sbjct: 184 GLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAPLKSLS 243
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L L ++TD GL L L LT L+L+G ++TD+G L F+NL L++ G +TDA
Sbjct: 244 VLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLSGTNVTDA 303
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
G+K + +L L LS +TD L+ ++ L L L + +++ T AG++ +
Sbjct: 304 GIKELARFKNLAHLELSSTA-VTDVGLKELASLKKLTKLFLISTKTTFAGIKEFQ 357
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 153/307 (49%), Gaps = 27/307 (8%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL S+DLS + VT++GL L +L +L + I+D GL+ L L NLT+ + N
Sbjct: 73 SLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDT-GITDAGLKELAPLKNLTAFNL-SNT 130
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+K + NL L L + ITD+ +K L
Sbjct: 131 KVTDTGLKELTAIRNLTALHLRKTE-------------------------ITDAGLKSLP 165
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ +L +L +S +KVTD+G+ L L++LT L L VT L L+ +L L L
Sbjct: 166 PMKDLTTLDLSDTKVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYN 225
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+++D G ++ + + SL VL LG E+TD L L L NL +LNL + D G+ L
Sbjct: 226 TKVTDAGLKELAPLKSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELA 285
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
NL ++LS T ++D +++LA +L L L + +TD GL L SL LT L L
Sbjct: 286 PFQNLTLLDLSGTNVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFLIS 345
Query: 358 ARITDSG 364
+ T +G
Sbjct: 346 TKTTFAG 352
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 136/254 (53%), Gaps = 1/254 (0%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+G VT L L L SL ++L+ +++ G + SL L+L ITD L
Sbjct: 56 QGHRVTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKE 115
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L L NL + NL + + D GL LT + NL +++L T I+D L+ L + L +L+L
Sbjct: 116 LAPLKNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDL 175
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
++TD GL AL L LT+L L+ +TD+G L KNL L + +TDAG+K
Sbjct: 176 SDTKVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKE 235
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+ L SL++L L + +TD L+ ++ L L +LN+ +++T AG++ L P +NL L
Sbjct: 236 LAPLKSLSVLVLGE-TEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLD 294
Query: 452 LESCKVTANDIKRL 465
L VT IK L
Sbjct: 295 LSGTNVTDAGIKEL 308
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 142/280 (50%), Gaps = 11/280 (3%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGL 99
+ GV + + V+ + SL ++ L + +TD+GL L NL + FN +++D GL
Sbjct: 81 HTGVTNAGLKVLVA-FKSLTTLSLHDTGITDAGLKELAPLKNLTA--FNLSNTKVTDTGL 137
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ L + NLT+L R+ IT G+K+ + +L LDL GL L L +L +
Sbjct: 138 KELTAIRNLTALHLRKTE-ITDAGLKSLPPMKDLTTLDLSDTKVTDAGLKALAPLERLTN 196
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L + + +TD+ +K L+ NL L + +KVTD+G+ L L+ L++L L VT A
Sbjct: 197 LYL-YNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAPLKSLSVLVLGETEVTDA 255
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
L L+ L +L LNL +++D G ++ + +L +L+L +TD + L NL
Sbjct: 256 GLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLSGTNVTDAGIKELARFKNLA 315
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINL-----SFTGISD 314
L L S + D GL L L L + L +F GI +
Sbjct: 316 HLELSSTAVTDVGLKELASLKKLTKLFLISTKTTFAGIKE 355
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 108/240 (45%), Gaps = 18/240 (7%)
Query: 11 FNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
EL R LT + L R + D L P + D L ++DLS + VT
Sbjct: 137 LKELTAIRNLTALHL---RKTEITDAGLKSLPPMKD------------LTTLDLSDTKVT 181
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL L L +L + + +++D GL+ L NL L N +T G+K A L
Sbjct: 182 DAGLKALAPLERLTNL-YLYNTEVTDTGLKELAPSKNLAVL-LLYNTKVTDAGLKELAPL 239
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
+L L L GL L L L +LN+ + +TD+ +K L+ NL L +S +
Sbjct: 240 KSLSVLVLGETEVTDAGLKELAPLKNLTALNL-YGTKVTDAGVKELAPFQNLTLLDLSGT 298
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
VTD+GI L + L L L VT L L++L L L L + + G ++F K
Sbjct: 299 NVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFLISTKTTFAGIKEFQK 358
>gi|59802561|gb|AAX07517.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 402
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 158/290 (54%), Gaps = 2/290 (0%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
R +LT L+ R +T G+K L L LDL R GL L+GL L + I
Sbjct: 115 RDFISLTGLNLRFTK-VTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTW-I 172
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ +TD+ +K LSGL NL L + +KVT G+ LKGL LT L+L G T A L
Sbjct: 173 SAPHEVTDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLA 232
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L L +L LNL+ +++D G ++ + + +L L+L F ++TD L LKGL+NL L+
Sbjct: 233 ELKGLTNLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLD 292
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L + D GL L L+ L ++L T ++ L++L GL++L SL+L +TD GL
Sbjct: 293 LFGTSVTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLK 352
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
L+ L LT LDLFG ++D+ L+ L SL + +TD G+K +
Sbjct: 353 ELSGLANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTAVTDVGIKEL 402
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 159/288 (55%), Gaps = 2/288 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ L LN+++ +TD +K + L+ L L + +KVTD+G+ L+GL LT
Sbjct: 117 FISLTGLNLRFTK-VTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAP 175
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
VT A L LS L +L LNL +++ G ++ + +L L+L TD L LK
Sbjct: 176 HEVTDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELK 235
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
GLTNL LNL + D GL LTGL NL S++L FT ++D L+KL GLS+L L+L
Sbjct: 236 GLTNLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFG 295
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+TD GL L L+ LT LDL ++T +G L NL SL + +TDAG+K +
Sbjct: 296 TSVTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKELS 355
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
L++LT L+L ++D L+ + L+ L SL + + +T G++ L
Sbjct: 356 GLANLTSLDLF-GTPVSDTDLKELKKLSKLTSLRLGRTAVTDVGIKEL 402
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 142/256 (55%), Gaps = 1/256 (0%)
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT LNL VT L + +L L L+L R +++D G ++ + +L +E+T
Sbjct: 120 LTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAPHEVT 179
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
D L L GL NL LNL + GL L GLTNL S++L T +D SL +L GL++
Sbjct: 180 DAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLTN 239
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L LNL ++TD GL LT L L LDL ++TD+G L+ NL L++ G +T
Sbjct: 240 LTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSVT 299
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
DAG+K + LS LT+L+L + +T L+ ++GL L SL++ + +T AGL+ L L
Sbjct: 300 DAGLKELGRLSKLTVLDLG-STKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKELSGLA 358
Query: 446 NLRSLTLESCKVTAND 461
NL SL L V+ D
Sbjct: 359 NLTSLDLFGTPVSDTD 374
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 152/288 (52%), Gaps = 27/288 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +DL + VTD+GL L+ +NL + + +++D GL+ L GL+NLT L+ R
Sbjct: 142 SKLTVLDLGRTKVTDAGLQELRGLTNLTTW-ISAPHEVTDAGLKELSGLANLTELNLRFT 200
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K GL NL LDL + L LKGL L LN+ +TD+ ++ L
Sbjct: 201 K-VTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLTNLTELNLSDTK-VTDAGLQEL 258
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+GL NL SL + +KVTD+G+ LKGL L +L+L G VT
Sbjct: 259 TGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSVT------------------- 299
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
D G ++ ++ L VL+LG ++T L L GL NL SL+L + D GL L
Sbjct: 300 -----DAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKEL 354
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+GL NL S++L T +SD L++L LS L SL L +TD G+ L
Sbjct: 355 SGLANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTAVTDVGIKEL 402
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 158/285 (55%), Gaps = 1/285 (0%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L L + +KVTD G+ ++ L KLT+L+L VT A L L L +L ++
Sbjct: 119 SLTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAPHEV 178
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
+D G ++ S + +L LNL F ++T L LKGLTNL SL+L D L L GLT
Sbjct: 179 TDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLT 238
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
NL +NLS T ++D L++L GL++L SL+L ++TD GL L L+ L LDLFG +
Sbjct: 239 NLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSV 298
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD+G L L L++ +T G+K + L++LT L+L +TD L+ +SGL
Sbjct: 299 TDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTA-VTDAGLKELSGL 357
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
L SL++ + ++ L+ LK L L SL L VT IK L
Sbjct: 358 ANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTAVTDVGIKEL 402
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 124/224 (55%), Gaps = 3/224 (1%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
SL LNL F ++TD L ++ L+ L L+L + D GL L GLTNL + + +
Sbjct: 119 SLTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAPHEV 178
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
+D L++L+GL++L LNL ++T GL L LT LT LDLFG TD+ A L+
Sbjct: 179 TDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLT 238
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
NL L + +TDAG++ + L++L L+L + +TD L+ + GL+ L L++ +
Sbjct: 239 NLTELNLSDTKVTDAGLQELTGLANLASLDL-RFTKVTDAGLQKLKGLSNLAVLDLFGTS 297
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
+T AGL+ L L L L L S KVT +K L L NL S
Sbjct: 298 VTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTG--LANLTSL 339
>gi|290997932|ref|XP_002681535.1| predicted protein [Naegleria gruberi]
gi|284095159|gb|EFC48791.1| predicted protein [Naegleria gruberi]
Length = 448
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 117/450 (26%), Positives = 219/450 (48%), Gaps = 40/450 (8%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 94
D+C + K++ S+ L S+D+ G+++ D G ++ + L SL+ + +I
Sbjct: 32 DICYSRIGAEGAKFI----SEMKQLTSLDIGGNEIGDEGSKYISEMKQLTSLNIDNN-RI 86
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
D G + + + LTSLS NN I +G K+ + + L LD+
Sbjct: 87 GDEGAKSISEMKQLTSLSIN-NNEIGVEGAKSISEMKQLTSLDI---------------- 129
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
N I D +K +S + LK L I +++ D G Y+ +++LT LN+
Sbjct: 130 ---------SGNGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGEN 180
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ + S+S + L L++ ++ D+G + S++ L L++ N I D+ + +
Sbjct: 181 RIGDEGVKSISEMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISE 240
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
+ L SL++ GIGDEG ++ + L+ +++ I D + ++ + L SLN+
Sbjct: 241 MKQLTSLDISGNGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNN 300
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+I G+ +++ + LT L ++ +I G + K L+SL IC + D GVK I +
Sbjct: 301 EIGVEGVKSISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISE 360
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-- 452
+ L LN+ N + D+ ++ IS + L SLN+S +RI + G + + +K L SL +
Sbjct: 361 MKQLISLNIGGNG-IGDEGVKSISEMKQLTSLNISKNRIGAEGSKFISEMKQLTSLDICY 419
Query: 453 -----ESCKVTANDIKRLQSRDLPNLVSFR 477
E K + +++K+L+S + N F+
Sbjct: 420 NEIGGEGVK-SISEMKQLKSLSIHNQQMFK 448
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 180/338 (53%), Gaps = 6/338 (1%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERC-TRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I +G K+ + + L LD+ C +RI G + + +L SL+I N I D K
Sbjct: 12 NQIGDEGAKSISEMKQLTSLDI--CYSRIGAEGAKFISEMKQLTSLDI-GGNEIGDEGSK 68
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S + L SL I +++ D G + +++LT L++ + S+S + L L+
Sbjct: 69 YISEMKQLTSLNIDNNRIGDEGAKSISEMKQLTSLSINNNEIGVEGAKSISEMKQLTSLD 128
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ + D G + S++ LK+L++G NEI DE ++ + L SLN+ IGDEG+
Sbjct: 129 ISGNGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGENRIGDEGVK 188
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
+++ + L S+++ I D + ++ + L SL++ I D G+ +++ + LT LD
Sbjct: 189 SISEMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLD 248
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ G I D GA ++ K L+ L+I G + D G K+I ++ LT LN+ N + + +
Sbjct: 249 ISGNGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNN-EIGVEGV 307
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ IS + L SL + N++I G++ + +K L+SL +
Sbjct: 308 KSISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKSLNI 345
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 154/311 (49%), Gaps = 25/311 (8%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ LK L I +++ D G + +++LT L++ + A +S + L L++
Sbjct: 1 MKQLKLLDIGENQIGDEGAKSISEMKQLTSLDICYSRIGAEGAKFISEMKQLTSLDIGGN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ D+G + S++ L LN+ N I DE + + L SL++++ IG EG +++
Sbjct: 61 EIGDEGSKYISEMKQLTSLNIDNNRIGDEGAKSISEMKQLTSLSINNNEIGVEGAKSISE 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLK------------------------SLNLDAR 334
+ L S+++S GI D ++ ++ + LK SLN+
Sbjct: 121 MKQLTSLDISGNGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGEN 180
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+I D G+ +++ + LT L ++ RI D GA + K L SL+I G G+ D GVK I +
Sbjct: 181 RIGDEGVKSISEMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISE 240
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
+ LT L++S N + D+ + IS + L L++ + I G +++ +K L SL + +
Sbjct: 241 MKQLTSLDISGNG-IGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYN 299
Query: 455 CKVTANDIKRL 465
++ +K +
Sbjct: 300 NEIGVEGVKSI 310
>gi|46447141|ref|YP_008506.1| hypothetical protein pc1507 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400782|emb|CAF24231.1| hypothetical protein pc1507 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 623
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 131/374 (35%), Positives = 193/374 (51%), Gaps = 35/374 (9%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK C NL+ L C ++D GL HL
Sbjct: 275 NAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHL----------------------- 311
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+ L+ L L+L C R+ GL +L L+ L+ LN+ C+ TD+ + L+ L L
Sbjct: 312 --SPLVALQHLELSDCPRLTDAGLAHLTSLVALQYLNLSECSNFTDAGLAHLTPLLTLTH 369
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLS 241
L +S C T +G+A+L L L LNL C +T A L LS L +L +LNL C L+
Sbjct: 370 LNLSWCYNFTHAGLAHLTPLVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLT 429
Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL 299
D G S + +L+ L+LG+ + +TD L HL L L+ L+L C + D GL +L+ L
Sbjct: 430 DAGLAHLSPLVALQHLDLGWCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPL 489
Query: 300 TNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 357
L+ ++LS + D L L L +LK LNL+ +TD GLA LT L L HLDL
Sbjct: 490 VALQHLDLSNCLSLKDAGLAHLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQ 549
Query: 358 -ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+T +G A+L + L+ L++ LTDAG+ H+ L +L LNL++ LTD L
Sbjct: 550 CPNLTGTGLAHLNSLMALQHLDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCPKLTDAGLA 609
Query: 416 LISGLTGLVSLNVS 429
++ L L L++S
Sbjct: 610 HLAPLVALEHLDLS 623
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 171/336 (50%), Gaps = 35/336 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN +TD+ + L NLK L + C +TD+G+++L L L L L C
Sbjct: 266 EVEALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHLSPLVALQHLELSDC 325
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDG-----------------CEKFSKIG--- 252
P +T A L L++L +L YLNL+ C +D G C F+ G
Sbjct: 326 PRLTDAGLAHLTSLVALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSWCYNFTHAGLAH 385
Query: 253 -----SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESI 305
+L+ LNLG ITD L HL L L+ LNL C + D GL +L+ L L+ +
Sbjct: 386 LTPLVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLAHLSPLVALQHL 445
Query: 306 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITD 362
+L + + ++D L L L +L+ L+L +TD GLA L+ L L HLDL + D
Sbjct: 446 DLGWCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQHLDLSNCLSLKD 505
Query: 363 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
+G A+L L+ L + LTDAG+ H+ L +L L+LSQ NLT L ++ L
Sbjct: 506 AGLAHLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSLM 565
Query: 422 GLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
L L++S +T AGL HL PL NLR L L C
Sbjct: 566 ALQHLDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCP 601
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 166/331 (50%), Gaps = 31/331 (9%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L P + D + + S +L ++LS S+ TD+GL HL L L+ ++
Sbjct: 316 ALQHLELSDCPRLTDAGLAHLTSL-VALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSW 374
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C + GL HL L L L+ IT G+ + L+ L L+L C+ + GL
Sbjct: 375 CYNFTHAGLAHLTPLVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLA 434
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+L L+ L+ L++ WC+ +TD+ + L+ L L+ L +S C +TD+G+A+L L L
Sbjct: 435 HLSPLVALQHLDLGWCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQH 494
Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+L C + A L L+ L +L YLNLN+C + +TD
Sbjct: 495 LDLSNCLSLKDAGLAHLTLLVTLKYLNLNKC-----------------------HNLTDA 531
Query: 268 CLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSS 325
L HL L L+ L+L C + GL +L L L+ +++S+ ++D L L L +
Sbjct: 532 GLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSLMALQHLDMSWCHNLTDAGLTHLTPLVN 591
Query: 326 LKSLNL-DARQITDTGLAALTSLTGLTHLDL 355
L+ LNL ++TD GLA L L L HLDL
Sbjct: 592 LRHLNLTKCPKLTDAGLAHLAPLVALEHLDL 622
>gi|46446916|ref|YP_008281.1| hypothetical protein pc1282 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400557|emb|CAF24006.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 1082
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 161/295 (54%), Gaps = 8/295 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL++L C ++D GL HL L L L + T G+
Sbjct: 781 LTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLR 840
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L L+L C + GL +L L+ L+ L++ +C+ TD+ + L+ L L+ L +
Sbjct: 841 PLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDL 900
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S CS TD+G+A+L+ L LT LNL C T A L L+ L +L +LNLN C +L+D G
Sbjct: 901 SCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTDAG 960
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNL 302
+ +L+ L+L + + TD L HL L L+ L+L SC + D GL +LT L L
Sbjct: 961 LAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLVAL 1020
Query: 303 ESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 355
+ ++LS+ ++D LR L L +L+ L L + T+ GLA S HL+L
Sbjct: 1021 QHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCENFTEVGLAHFKSSVASLHLNL 1075
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 155/309 (50%), Gaps = 31/309 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK+L + C +TD+G+A+L L L L+L C
Sbjct: 769 EIEELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYC 828
Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
T A L L L +L +LNL C+ L+D G + + +LK L+L + + TD L H
Sbjct: 829 SNFTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTH 888
Query: 272 LKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L L L+ L+L C D GL +L L L +NL +
Sbjct: 889 LTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRW--------------------- 927
Query: 331 LDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAG 388
TD GLA LT L L HL+L ++TD+G A+LR L++L++ TDAG
Sbjct: 928 --CHNFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAG 985
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNL 447
+ H+ L L L+LS LTD L ++ L L L++S + +T AGLRHL PL L
Sbjct: 986 LAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLAL 1045
Query: 448 RSLTLESCK 456
+ L L SC+
Sbjct: 1046 QDLYLYSCE 1054
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 152/275 (55%), Gaps = 9/275 (3%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK L++L+++ C +TD+ + L+ L L+ L +S CS TD+G+A+L+ L
Sbjct: 784 AHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLRPLV 843
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF- 261
LT LNL C +T A L L+ L +L YL+L+ C +D G + + +L+ L+L
Sbjct: 844 ALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCC 903
Query: 262 NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRK 319
+ TD L HL+ L L LNL C D GL +LT L L+ +NL+ ++D L
Sbjct: 904 SNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAH 963
Query: 320 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSL 377
L L +L++L+L TD GLA LT L L HLDL ++TD+G A+L L+ L
Sbjct: 964 LRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHL 1023
Query: 378 EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
++ LTDAG++H+ L +L L L N T+
Sbjct: 1024 DLSWCNHLTDAGLRHLTPLLALQDLYLYSCENFTE 1058
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 164/305 (53%), Gaps = 15/305 (4%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 159
L+ SN + L+F +N +T + A NL L L+ C + GL +L L+ L+
Sbjct: 763 LKYFSNEIEELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQH 822
Query: 160 LNIKWCNCITD---SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP- 215
L++ +C+ TD + ++PL LT+L +L+ C +TD+G+A+L L L L+L C
Sbjct: 823 LDLSYCSNFTDAGLAHLRPLVALTHL-NLRW-CRNLTDAGLAHLTPLVALKYLDLSYCSN 880
Query: 216 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 273
T A L L+ L +L +L+L+ C +D G + +L LNL + + TD L HL
Sbjct: 881 FTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLT 940
Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 331
L L+ LNL+ C + D GL +L L L++++LS+ + +D L L L L+ L+L
Sbjct: 941 PLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDL 1000
Query: 332 DA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAG 388
+ +++TD GLA LT L L HLDL + +TD+G +L L+ L + T+ G
Sbjct: 1001 SSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCENFTEVG 1060
Query: 389 VKHIK 393
+ H K
Sbjct: 1061 LAHFK 1065
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 153/283 (54%), Gaps = 10/283 (3%)
Query: 13 ELVYSR--CLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SD 68
EL +S+ LT+ L A ++C L+ L L + P + D + + S +L +DLS S+
Sbjct: 772 ELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTS-LVTLQHLDLSYCSN 830
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
TD+GL HL+ L L+ +C ++D GL HL L L L + T G+
Sbjct: 831 FTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLT 890
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C+ GL +L+ L+ L LN++WC+ TD+ + L+ L L+ L +
Sbjct: 891 PLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNL 950
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
+ C K+TD+G+A+L+ L L L+L C T A L L+ L L +L+L+ C +L+D G
Sbjct: 951 NLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAG 1010
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
+ + +L+ L+L + N +TD L HL L L+ L L SC
Sbjct: 1011 LAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSC 1053
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 124/219 (56%), Gaps = 9/219 (4%)
Query: 246 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTN 301
EK K S ++ L F++ +TD L+ LK NL++L+L C + D GL +LT L
Sbjct: 760 EKVLKYFSNEIEELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVT 819
Query: 302 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGA 358
L+ ++LS+ + +D L L L +L LNL R +TD GLA LT L L +LDL + +
Sbjct: 820 LQHLDLSYCSNFTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCS 879
Query: 359 RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
TD+G +L L+ L++ C TDAG+ H++ L +LT LNL N TD L +
Sbjct: 880 NFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHL 939
Query: 418 SGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTLESC 455
+ L L LN++ ++T AGL HL+PL L++L L C
Sbjct: 940 TPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYC 978
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 11/199 (5%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS S+ TD+GL HL LQ LD + C +D GL HLR L LT L+ R
Sbjct: 869 ALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWC 928
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ T G+ L+ L L+L C ++ GL +L+ L+ L++L++ +C+ TD+ +
Sbjct: 929 HNFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAH 988
Query: 176 LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 233
L+ L L+ L + SC K+TD+G+A+L L L L+L C +T A L L+ L +L L
Sbjct: 989 LTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDL 1048
Query: 234 NLNRCQLSDDGCEKFSKIG 252
L CE F+++G
Sbjct: 1049 YLY-------SCENFTEVG 1060
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 2/149 (1%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+ TD+GL HL LQ L+ N C +++D GL HLR L L +L + T G+
Sbjct: 930 NFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHL 989
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L LDL C ++ GL +L L+ L+ L++ WCN +TD+ ++ L+ L L+ L
Sbjct: 990 TPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLY 1049
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ SC T+ G+A+ K LNL+ C
Sbjct: 1050 LYSCENFTEVGLAHFKSSVASLHLNLKWC 1078
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 59 LLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L +DLS +TD+GL HL LQ LD ++C ++D GL HL L L L
Sbjct: 995 LQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCE 1054
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH 145
T G+ F + + L+L+ C R
Sbjct: 1055 NFTEVGLAHFKSSVASLHLNLKWCKRFQ 1082
>gi|149174696|ref|ZP_01853321.1| hypothetical protein PM8797T_26210 [Planctomyces maris DSM 8797]
gi|148846390|gb|EDL60728.1| hypothetical protein PM8797T_26210 [Planctomyces maris DSM 8797]
Length = 460
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 183/349 (52%), Gaps = 5/349 (1%)
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
D L+HL GL +L L N T + L L LE G+ NL L
Sbjct: 106 QDADLKHLAGLPSLERLILWGPN-FTDVSTEEIGKKNKLWFLSLESTAIGDEGVKNLSDL 164
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEG 213
L+ L+++ N IT+ +K ++ LK L + +K + D G+ ++KG++ L +L ++
Sbjct: 165 QGLQVLSLRATN-ITNDALKVVAAFPELKDLDLRFNKEINDEGMPHIKGMKNLKVLKVQA 223
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
VT + ++AL +L LN +SD+ E K +L L L EI+DE + +LK
Sbjct: 224 TQVTDEGMKDIAALPNLQRLNTWGRNISDETLE-LLKDKNLVSLELDDTEISDEGMKYLK 282
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+TN+ESL+L +G+ G+ N+ + L++++L T ++D ++ L+GL+ L L+LD
Sbjct: 283 DMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMKYLSGLTDLTYLDLDE 342
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
I D GL + L LT L L+G TD G + F L L + G +TDAG+K +
Sbjct: 343 SMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFTELNRLNLEGTPITDAGLKQLL 402
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L L LNLS+ ++D+ L+ ++ L L L +S +++T G++ +
Sbjct: 403 PLKKLEYLNLSK-TEISDEGLKTLAALKNLKELQLSFTQVTDDGVKQFE 450
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 150/294 (51%), Gaps = 9/294 (3%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
QG +LS L +++T+ L + L+ LD F +I+D G+ H++G+ NL L +
Sbjct: 165 QGLQVLS--LRATNITNDALKVVAAFPELKDLDLRFNKEINDEGMPHIKGMKNLKVLKVQ 222
Query: 115 RNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+T +GMK A L NL +L+ + L+ K L+ LE + + I+D
Sbjct: 223 ATQ-VTDEGMKDIAALPNLQRLNTWGRNISDETLELLKDKNLVSLELDDTE----ISDEG 277
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
MK L +TN++SL + V + GI ++ ++KL L+L VT + LS L L Y
Sbjct: 278 MKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMKYLSGLTDLTY 337
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L+ + D G E+ + L L L E TD+ L + G T L LNL+ I D G
Sbjct: 338 LDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFTELNRLNLEGTPITDAG 397
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
L L L LE +NLS T ISD L+ LA L +LK L L Q+TD G+ +
Sbjct: 398 LKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNLKELQLSFTQVTDDGVKQFEA 451
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 171/356 (48%), Gaps = 50/356 (14%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++K N D+D+K L+GL +L+ L + TD + KL L+LE +
Sbjct: 98 LDLKGTNA-QDADLKHLAGLPSLERLILWGPNFTDVSTEEIGKKNKLWFLSLESTAIGDE 156
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNL 278
+ +LS L L L+L +++D + + LK L+L FN EI DE + H+KG+ NL
Sbjct: 157 GVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFNKEINDEGMPHIKGMKNL 216
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
+ L + + + DEG+ ++ L NL+ +N ISD +L L +L SL LD +I+D
Sbjct: 217 KVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISDETLELLKD-KNLVSLELDDTEISD 275
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
G+ L +T + L L + + G ++N K L++L + +TD G+K++ L+ L
Sbjct: 276 EGMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMKYLSGLTDL 335
Query: 399 TLLNLSQN-----------------------CNLTDKTLELISGLTGLVSLNVSNSRITS 435
T L+L ++ TD+ L++ISG T L LN+ + IT
Sbjct: 336 TYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFTELNRLNLEGTPITD 395
Query: 436 AGL------------------------RHLKPLKNLRSLTLESCKVTANDIKRLQS 467
AGL + L LKNL+ L L +VT + +K+ ++
Sbjct: 396 AGLKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNLKELQLSFTQVTDDGVKQFEA 451
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 133/288 (46%), Gaps = 49/288 (17%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S G + L+L D + + + SL+ L L TD + L L+L
Sbjct: 89 MSDDGRVLILDLKGTNAQDADLKHLAGLPSLERLILWGPNFTDVSTEEIGKKNKLWFLSL 148
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA---------------------- 321
+S IGDEG+ NL+ L L+ ++L T I++ +L+ +A
Sbjct: 149 ESTAIGDEGVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFNKEINDEGMP 208
Query: 322 ---GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
G+ +LK L + A Q+TD G+ + +L L L+ +G I+D L++ KNL SLE
Sbjct: 209 HIKGMKNLKVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISDETLELLKD-KNLVSLE 267
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLS------------QNCN-----------LTDKTLE 415
+ ++D G+K++KD++++ L+L QN +TD+ ++
Sbjct: 268 LDDTEISDEGMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMK 327
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+SGLT L L++ S I GL +K LK L L L + T +K
Sbjct: 328 YLSGLTDLTYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLK 375
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 101/230 (43%), Gaps = 59/230 (25%)
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS------------------ 328
G+ D+G V + ++L T D L+ LAGL SL+
Sbjct: 88 GMSDDGRVLI--------LDLKGTNAQDADLKHLAGLPSLERLILWGPNFTDVSTEEIGK 139
Query: 329 ------LNLDARQITDTGLAALTSLTGLTHLDL-------------------------FG 357
L+L++ I D G+ L+ L GL L L F
Sbjct: 140 KNKLWFLSLESTAIGDEGVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFN 199
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
I D G +++ KNL+ L++ +TD G+K I L +L LN + N++D+TLEL+
Sbjct: 200 KEINDEGMPHIKGMKNLKVLKVQATQVTDEGMKDIAALPNLQRLN-TWGRNISDETLELL 258
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
LVSL + ++ I+ G+++LK + N+ SL L V I+ +Q+
Sbjct: 259 KD-KNLVSLELDDTEISDEGMKYLKDMTNMESLHLRRDFVGNPGIENIQN 307
>gi|46445833|ref|YP_007198.1| F-box protein [Candidatus Protochlamydia amoebophila UWE25]
gi|46399474|emb|CAF22923.1| putative F-box protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 337
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 127/357 (35%), Positives = 185/357 (51%), Gaps = 35/357 (9%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L +TD+GL HLK LQ L+ ++C ++D GL HL L+ L L+
Sbjct: 6 ALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLNLSVCG 65
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+ L+ L LDL +C ++ GL +L L+ L+ L ++
Sbjct: 66 KLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMR------------- 112
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL 235
C K+TD G+A+L+ L L L+L+GC +T A L L L +L +LNL
Sbjct: 113 -----------GCRKLTDVGLAHLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNL 161
Query: 236 NRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
RC L+D G + +L+ L+L G N +TD L HL L L+ LNL C D G
Sbjct: 162 KRCDNLTDIGLAHLRPLVALQHLDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAG 221
Query: 293 LVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGL 350
L +LT L L+ +NLS + ++D L L L +L+ LNL ++T GLA LT L L
Sbjct: 222 LAHLTPLVALQYLNLSDCSNLTDAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVAL 281
Query: 351 THLDLFG-ARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
LDL ++TD+G A+L L+ +LE C LTDAG+ H K L++ LNL
Sbjct: 282 EDLDLSQCGKLTDAGLAHLALLTALQYLNLERC-RKLTDAGLAHFKTLAASIYLNLQ 337
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 182/325 (56%), Gaps = 10/325 (3%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L+ L L+L C GL +LK L+ L+ LN+ WC+ +TD+ + L+ LT L+ L +S
Sbjct: 4 LVALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLNLSV 63
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
C K+T +G+A+L L L L+L C +T A L L+ L +L +L + C +L+D G
Sbjct: 64 CGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCRKLTDVGLA 123
Query: 247 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLES 304
+ +L+ L+L G + +TD L HL+ L L+ LNL C + D GL +L L L+
Sbjct: 124 HLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGLAHLRPLVALQH 183
Query: 305 INL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARIT 361
++L ++D L L L +L+ LNL + TD GLA LT L L +L+L + +T
Sbjct: 184 LDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLNLSDCSNLT 243
Query: 362 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
D+G A+L++ L+ L + LT AG+ H+ L +L L+LSQ LTD L ++ L
Sbjct: 244 DAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQCGKLTDAGLAHLALL 303
Query: 421 TGLVSLNVSNSR-ITSAGLRHLKPL 444
T L LN+ R +T AGL H K L
Sbjct: 304 TALQYLNLERCRKLTDAGLAHFKTL 328
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 159/292 (54%), Gaps = 12/292 (4%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF 231
M+PL L + L++ C K+TD+G+A+LK L L LNL C +T L L+ L +L
Sbjct: 1 MRPLVAL---QHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQ 57
Query: 232 YLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GI 288
+LNL+ C +L+ G + + +L+ L+L ++TD L HL L L+ L + C +
Sbjct: 58 HLNLSVCGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCRKL 117
Query: 289 GDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS 346
D GL +L L L+ ++L + ++D L L L +L+ LNL +TD GLA L
Sbjct: 118 TDVGLAHLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGLAHLRP 177
Query: 347 LTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLS 404
L L HLDL G +TD+G A+L L+ L + G TDAG+ H+ L +L LNLS
Sbjct: 178 LVALQHLDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLNLS 237
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
NLTD L + L L LN+S S++T AGL HL PL L L L C
Sbjct: 238 DCSNLTDAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQC 289
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLN 402
+ L L HL+L ++TD+G A+L++ L+ L + LTD G+ H+ L++L LN
Sbjct: 1 MRPLVALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLN 60
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
LS LT L ++ L L +L++S ++T AGL HL PL L+ L + C+
Sbjct: 61 LSVCGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCR 115
>gi|290982526|ref|XP_002673981.1| predicted protein [Naegleria gruberi]
gi|284087568|gb|EFC41237.1| predicted protein [Naegleria gruberi]
Length = 363
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 188/358 (52%), Gaps = 9/358 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QIS G +++ + LTSL+ NN I +G K + + L L++ G +
Sbjct: 13 QISGKGAKYISEMKQLTSLNIS-NNRIGGKGAKYISEMKQLTSLNIFNNRISDEGAKYIS 71
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L SL+I + N I K +S + L SL IS ++++D G Y+ +++LT LN+
Sbjct: 72 EMKQLISLDISY-NQIGAEGAKFISEMKQLTSLNISYNEISDEGAKYISEMKQLTSLNIS 130
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
++ +S + L LN++ Q+S G + S++ L LN+ N+I+ + ++
Sbjct: 131 YNDISEGA-KPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISDNQISGKGAKYI 189
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+ L SL++ + I DEG L+ + L S+N+S IS + ++ + L SLN+
Sbjct: 190 GEMKQLTSLDISNNQISDEGAKFLSEMKQLISLNVSNNQISGKEAKFMSEMKQLTSLNIS 249
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
QI+D ++ + LT LD+F I+D GA Y+ K+L SL+I ++ HI
Sbjct: 250 NNQISDERAKYISEMKQLTSLDIFNNLISDEGAKYISEMKHLTSLDISYNEIS-----HI 304
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
++ LT LN+S N + D+ + IS + L SL++S +RI G +++ +K+L SL
Sbjct: 305 SEMKQLTSLNISFN-QINDEGAKSISEMKQLTSLDMSYNRIGGEGAKYISEMKHLTSL 361
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 149/274 (54%), Gaps = 2/274 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL +S ++++ G Y+ +++LT LN+ + +S + L LN+
Sbjct: 1 MKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISNNRIGGKGAKYISEMKQLTSLNIFNN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++SD+G + S++ L L++ +N+I E + + L SLN+ I DEG ++
Sbjct: 61 RISDEGAKYISEMKQLISLDISYNQIGAEGAKFISEMKQLTSLNISYNEISDEGAKYISE 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+N+S+ IS+G+ + ++ + L SLN+ QI+ G ++ + LT L++
Sbjct: 121 MKQLTSLNISYNDISEGA-KPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISDN 179
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+I+ GA Y+ K L SL+I ++D G K + ++ L LN+S N ++ K + +S
Sbjct: 180 QISGKGAKYIGEMKQLTSLDISNNQISDEGAKFLSEMKQLISLNVS-NNQISGKEAKFMS 238
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ L SLN+SN++I+ +++ +K L SL +
Sbjct: 239 EMKQLTSLNISNNQISDERAKYISEMKQLTSLDI 272
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 168/315 (53%), Gaps = 4/315 (1%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLN+ N I+ K +S + L SL IS +++ G Y+ +++LT LN+
Sbjct: 1 MKQLTSLNVS-NNQISGKGAKYISEMKQLTSLNISNNRIGGKGAKYISEMKQLTSLNIFN 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
++ +S + L L+++ Q+ +G + S++ L LN+ +NEI+DE ++
Sbjct: 60 NRISDEGAKYISEMKQLISLDISYNQIGAEGAKFISEMKQLTSLNISYNEISDEGAKYIS 119
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L SLN+ I EG ++ + L S+N+S IS + ++ + L SLN+
Sbjct: 120 EMKQLTSLNISYNDIS-EGAKPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISD 178
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QI+ G + + LT LD+ +I+D GA +L K L SL + ++ K +
Sbjct: 179 NQISGKGAKYIGEMKQLTSLDISNNQISDEGAKFLSEMKQLISLNVSNNQISGKEAKFMS 238
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
++ LT LN+S N ++D+ + IS + L SL++ N+ I+ G +++ +K+L SL +
Sbjct: 239 EMKQLTSLNIS-NNQISDERAKYISEMKQLTSLDIFNNLISDEGAKYISEMKHLTSLDIS 297
Query: 454 SCKVTA-NDIKRLQS 467
+++ +++K+L S
Sbjct: 298 YNEISHISEMKQLTS 312
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 166/324 (51%), Gaps = 9/324 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++ + ++D G ++ + L SLD ++ QI G + + + LTSL+
Sbjct: 47 SEMKQLTSLNIFNNRISDEGAKYISEMKQLISLDISYN-QIGAEGAKFISEMKQLTSLNI 105
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I+ +G K + + L L++ I G + + +L SLN+ N I+
Sbjct: 106 SY-NEISDEGAKYISEMKQLTSLNI-SYNDISEGAKPISEMKQLTSLNVS-NNQISGKGA 162
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS ++++ G Y+ +++LT L++ ++ LS + L L
Sbjct: 163 KYISEMKQLTSLNISDNQISGKGAKYIGEMKQLTSLDISNNQISDEGAKFLSEMKQLISL 222
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N++ Q+S + S++ L LN+ N+I+DE ++ + L SL++ + I DEG
Sbjct: 223 NVSNNQISGKEAKFMSEMKQLTSLNISNNQISDERAKYISEMKQLTSLDIFNNLISDEGA 282
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
++ + +L S+++S+ IS ++ + L SLN+ QI D G +++ + LT L
Sbjct: 283 KYISEMKHLTSLDISYNEISH-----ISEMKQLTSLNISFNQINDEGAKSISEMKQLTSL 337
Query: 354 DLFGARITDSGAAYLRNFKNLRSL 377
D+ RI GA Y+ K+L SL
Sbjct: 338 DMSYNRIGGEGAKYISEMKHLTSL 361
>gi|46447548|ref|YP_008913.1| hypothetical protein pc1914 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401189|emb|CAF24638.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 528
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 179/341 (52%), Gaps = 31/341 (9%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +T++ L+ LKDC N++ L F C ++D GL HL L L L +T G+
Sbjct: 203 ENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYCENLTDAGL 262
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L+L C + GLV+L L+ L+ L++ +C +TD+ + L+ LT L+
Sbjct: 263 AYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQ 322
Query: 184 SLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L +SC + +TD+G+A+L L L L+L C +T A L L+ L +L +L L
Sbjct: 323 HLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYL------ 376
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLT 300
GCE +TD L HL LT L+ L+L C + D GL +LT LT
Sbjct: 377 -IGCEN----------------LTDAGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLT 419
Query: 301 NLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FG 357
L+ +NLS ++D L L L +L+ LNL + R +TD GLA LT LT L HLDL +
Sbjct: 420 GLQHLNLSRCYKLTDAGLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYC 479
Query: 358 ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 397
+TD+G A+L L+ L++ LTD G+ K L++
Sbjct: 480 INLTDAGLAHLTPLTALQHLDLSRCRRLTDDGLDRFKTLAT 520
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 171/320 (53%), Gaps = 34/320 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD+GL HL LQ LD ++C ++D GL +L+ L+ L L+ +
Sbjct: 232 VTDAGLAHLVPLKGLQHLDLSYCENLTDAGLAYLKPLTALQHLN--------------LS 277
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
G NL GLV+L L+ L+ L++ +C +TD+ + L+ LT L+ L +S
Sbjct: 278 GCWNLTD----------AGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQHLGLS 327
Query: 189 CSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGC 245
C + +TD+G+A+L L L L+L C +T A L L+ L +L +L L C+ L+D G
Sbjct: 328 CCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENLTDAGL 387
Query: 246 EKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNL 302
+ + +L+ L+L FN +TD L HL LT L+ LNL C + D GL +LT L L
Sbjct: 388 AHLTPLTALQHLDLSCCFN-LTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLVAL 446
Query: 303 ESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-R 359
+ +NLS ++D L L L++L+ L+L +TD GLA LT LT L HLDL R
Sbjct: 447 QHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRR 506
Query: 360 ITDSGAAYLRNFKNLRSLEI 379
+TD G + +LEI
Sbjct: 507 LTDDGLDRFKTLATSLNLEI 526
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 121/354 (34%), Positives = 181/354 (51%), Gaps = 31/354 (8%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
++ L+F+ +++ L L+ N+ L F++ +T G+ L L LDL C
Sbjct: 196 IEVLNFSENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYCE 255
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
+ GL LK L L+ LN+ C +TD+ + L+ L L+ L +S C +TD+G+A+L
Sbjct: 256 NLTDAGLAYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHL 315
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLN 258
L L L L C +T A L L+ L +L +L+L+ C L+D + + +L+ L
Sbjct: 316 TPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLY 375
Query: 259 L-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDG 315
L G +TD L HL LT L+ L+L C + D GL +LT LT L+ +NLS ++D
Sbjct: 376 LIGCENLTDAGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTDA 435
Query: 316 SLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L L L +L+ LNL + R +TD GLA LT LT L HLDL Y N
Sbjct: 436 GLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDL----------KYCIN---- 481
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
LTDAG+ H+ L++L L+LS+ LTD L+ L ++L +
Sbjct: 482 ---------LTDAGLAHLTPLTALQHLDLSRCRRLTDDGLDRFKTLATSLNLEI 526
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 172/316 (54%), Gaps = 10/316 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E LN +T++ + L N++ L C VTD+G+A+L L+ L L+L C
Sbjct: 195 KIEVLNFSENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYC 254
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
+T A L L L +L +LNL+ C L+D G + + L+ L+L + E +TD L H
Sbjct: 255 ENLTDAGLAYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAH 314
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
L LT L+ L L C + D GL +L LT L+ ++LS ++D SL L L++L+ L
Sbjct: 315 LTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHL 374
Query: 330 NL-DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTD 386
L +TD GLA LT LT L HLDL +TD+G ++L L+ L + LTD
Sbjct: 375 YLIGCENLTDAGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTD 434
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLKPLK 445
AG+ H+ L +L LNLS+ +LTD L ++ LT L L++ +T AGL HL PL
Sbjct: 435 AGLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLT 494
Query: 446 NLRSLTLESCKVTAND 461
L+ L L C+ +D
Sbjct: 495 ALQHLDLSRCRRLTDD 510
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 174/318 (54%), Gaps = 12/318 (3%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK +E L K C +TD+ + L L L+ L +S C +TD+G+AYLK L
Sbjct: 210 AHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYCENLTDAGLAYLKPLT 269
Query: 205 KLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 262
L LNL GC +T A L L+ L L +L+L+ C+ L+D G + + +L+ L L
Sbjct: 270 ALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQHLGLSCC 329
Query: 263 E-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINL-SFTGISDGSLRK 319
E +TD L HL LT L+ L+L C + D L +LT LT L+ + L ++D L
Sbjct: 330 ENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENLTDAGLAH 389
Query: 320 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSL 377
L L++L+ L+L +TD GL+ LT LTGL HL+L ++TD+G A+L L+ L
Sbjct: 390 LTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLVALQHL 449
Query: 378 EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITS 435
+ LTDAG+ H+ L++L L+L NLTD L ++ LT L L++S R+T
Sbjct: 450 NLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRRLTD 509
Query: 436 AGLRHLKPLKNLRSLTLE 453
GL K L SL LE
Sbjct: 510 DGLDRFKTLAT--SLNLE 525
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 171/323 (52%), Gaps = 14/323 (4%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSG-SDVTDSGLIH 76
LT L A +DC ++ L + GV D + ++ +G L +DLS ++TD+GL +
Sbjct: 207 LTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKG--LQHLDLSYCENLTDAGLAY 264
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK + LQ L+ + C ++D GL HL L L L +T G+ L L L
Sbjct: 265 LKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQHL 324
Query: 137 DLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTD 194
L C + GL +L L L+ L++ C +TD+ + L+ LT L+ L I C +TD
Sbjct: 325 GLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENLTD 384
Query: 195 SGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIG 252
+G+A+L L L L+L C +T A L L+ L L +LNL+RC +L+D G + +
Sbjct: 385 AGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLV 444
Query: 253 SLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF- 309
+L+ LNL +TD L HL LT L+ L+L C + D GL +LT LT L+ ++LS
Sbjct: 445 ALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRC 504
Query: 310 TGISDGSLRKLAGLSSLKSLNLD 332
++D L + L++ SLNL+
Sbjct: 505 RRLTDDGLDRFKTLAT--SLNLE 525
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 146/262 (55%), Gaps = 9/262 (3%)
Query: 204 QKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF 261
+K+ +LN E +T A L +L ++ L +C+ ++D G + L+ L+L +
Sbjct: 194 KKIEVLNFSENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSY 253
Query: 262 NE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLR 318
E +TD L +LK LT L+ LNL C + D GLV+LT L L+ ++LS+ ++D L
Sbjct: 254 CENLTDAGLAYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLA 313
Query: 319 KLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRS 376
L L++L+ L L +TD GLA L LT L HLDL +TD+ ++L L+
Sbjct: 314 HLTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQH 373
Query: 377 LEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRIT 434
L + G LTDAG+ H+ L++L L+LS NLTD L ++ LTGL LN+S ++T
Sbjct: 374 LYLIGCENLTDAGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLT 433
Query: 435 SAGLRHLKPLKNLRSLTLESCK 456
AGL HL L L+ L L C+
Sbjct: 434 DAGLAHLTTLVALQHLNLSECR 455
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL + LQ LD +CI ++D GL HL L+ L L R +T G+ F
Sbjct: 457 LTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRRLTDDGLDRFK 516
Query: 129 GLINLVKLDLER 140
L + L++ R
Sbjct: 517 TLATSLNLEIVR 528
>gi|290998894|ref|XP_002682015.1| predicted protein [Naegleria gruberi]
gi|284095641|gb|EFC49271.1| predicted protein [Naegleria gruberi]
Length = 413
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 157/293 (53%), Gaps = 3/293 (1%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K + DS +K +S + L SL I +++ G+ Y+ +++LT LN+ ++
Sbjct: 111 VNLKVSRWLLDSVDQLKFISEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNISEIEIS 170
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+S + L L ++ ++ D+G + S++ L LN+G NEI+DE H+ +
Sbjct: 171 DEGAKYISEMKQLTSLYIHNNEIGDEGSKHISEMKQLTSLNIGCNEISDEGAKHISEMNQ 230
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L SL++ IGDEG ++ + L S++++ I D + ++ + L SLN+ +I
Sbjct: 231 LISLSIGYNRIGDEGFKYISEMKQLTSLDITDDEIGDEGAKYISEMKQLTSLNIGFNEIG 290
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D G ++ L LT LD+ I+D GA Y+ K L L I ++D G K+I +L
Sbjct: 291 DEGAKYISELKQLTSLDISETEISDEGAKYISEMKQLIWLTIGYNEISDKGAKYISELKQ 350
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
LT L+++ N + ++ + IS + L+SLN+ +RI G +++ +K L SL
Sbjct: 351 LTSLDITDN-KIGNEGAKYISEMNQLISLNIGYNRIGDEGAKYISEMKQLTSL 402
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 51/324 (15%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ + + G+ ++ + L SL+ + I+ISD G +++ + LTSL +
Sbjct: 130 SEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNIS-EIEISDEGAKYISEMKQLTSL-Y 187
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G K ++ + +L SLNI CN I+D
Sbjct: 188 IHNNEIGDEGSK------------------------HISEMKQLTSLNIG-CNEISDEGA 222
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G Y+ +++LT L
Sbjct: 223 KHISEMNQLISLSIGYNRIGDEGFKYISEMKQLT------------------------SL 258
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ ++ D+G + S++ L LN+GFNEI DE ++ L L SL++ I DEG
Sbjct: 259 DITDDEIGDEGAKYISEMKQLTSLNIGFNEIGDEGAKYISELKQLTSLDISETEISDEGA 318
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
++ + L + + + ISD + ++ L L SL++ +I + G ++ + L L
Sbjct: 319 KYISEMKQLIWLTIGYNEISDKGAKYISELKQLTSLDITDNKIGNEGAKYISEMNQLISL 378
Query: 354 DLFGARITDSGAAYLRNFKNLRSL 377
++ RI D GA Y+ K L SL
Sbjct: 379 NIGYNRIGDEGAKYISEMKQLTSL 402
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 116/235 (49%), Gaps = 3/235 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+ + +++ D G H+ + L SL+ C +ISD G +H+ ++ L SLS
Sbjct: 178 SEMKQLTSLYIHNNEIGDEGSKHISEMKQLTSLNIG-CNEISDEGAKHISEMNQLISLSI 236
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L LD+ G + + +L SLNI + N I D
Sbjct: 237 GYN-RIGDEGFKYISEMKQLTSLDITDDEIGDEGAKYISEMKQLTSLNIGF-NEIGDEGA 294
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S L L SL IS ++++D G Y+ +++L L + ++ +S L L L
Sbjct: 295 KYISELKQLTSLDISETEISDEGAKYISEMKQLIWLTIGYNEISDKGAKYISELKQLTSL 354
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
++ ++ ++G + S++ L LN+G+N I DE ++ + L SL S G
Sbjct: 355 DITDNKIGNEGAKYISEMNQLISLNIGYNRIGDEGAKYISEMKQLTSLRQISLGF 409
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
L ++ + LT LD++ RI G Y+ K L SL I ++D G K+I ++ LT
Sbjct: 126 LKFISEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNISEIEISDEGAKYISEMKQLTS 185
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L + N + D+ + IS + L SLN+ + I+ G +H+ + L SL++
Sbjct: 186 LYI-HNNEIGDEGSKHISEMKQLTSLNIGCNEISDEGAKHISEMNQLISLSI 236
>gi|168705463|ref|ZP_02737740.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 362
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 164/307 (53%), Gaps = 4/307 (1%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD+D+K L+ LT L L +S + VTD+G+ +L L KLT LNL G +T A L+
Sbjct: 53 KTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTKITDAGPTELA 112
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L L LNL+ Q++D G ++ +++ +L L+L +T+ L HL LT + SL+L
Sbjct: 113 PLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSLSLRG 171
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
I D GL + + ++ ++LS T ++D L+ L + L+L ++T GL L
Sbjct: 172 TKITDGGLREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLKELA 230
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
S L L L ++ D+G +L K L SL + G G+T GVK + L L +L L+
Sbjct: 231 SQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILELTG 290
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T L+ +S L L L +S++ +T GL+ + LK L +L L KVT + L
Sbjct: 291 TM-VTGGGLKHLSTLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLYRTKVTGAGVAEL 349
Query: 466 QSRDLPN 472
+ + LP
Sbjct: 350 R-KALPR 355
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 169/354 (47%), Gaps = 6/354 (1%)
Query: 18 RCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS-VDLSGSDVTDSGLIH 76
R + V L A D G +KW + +++ V L G VTD+ L
Sbjct: 3 RTVATVLLVLLAPVARADDGEGAAVKAIEKWGGKVKRDPKGVVTHVMLRGKTVTDADLKA 62
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + L LD + ++D GL+HL L+ LT+L+ IT G A L L L
Sbjct: 63 LAPLTGLTDLDLS-STPVTDAGLKHLAPLTKLTALNLG-GTKITDAGPTELAPLAVLTDL 120
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+L GL + L L +L++ +T++ + L+ LT ++SL + +K+TD G
Sbjct: 121 NLSSTQVTDAGLKEVARLRTLVALDLSHTG-VTNAGLGHLT-LTKMRSLSLRGTKITDGG 178
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
+ ++ + ++ L+L G +T L L + L+L+ +++ +G ++ + +LK
Sbjct: 179 LREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLKELASQPTLKF 237
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316
L+L ++ D L HL L LESL L+ G+ G+ L L L + L+ T ++ G
Sbjct: 238 LSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILELTGTMVTGGG 297
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
L+ L+ L L L L +TD GL + L L LDL+ ++T +G A LR
Sbjct: 298 LKHLSTLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLYRTKVTGAGVAELRK 351
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 141/292 (48%), Gaps = 3/292 (1%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
R +T +KA A L L LDL GL +L L KL +LN+ ITD+
Sbjct: 51 RGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTK-ITDAGPT 109
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ L L L +S ++VTD+G+ + L+ L L+L VT A L L+ L + L+
Sbjct: 110 ELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSLS 168
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L +++D G + +I S+ L+L +TDE L L + L+L + GL
Sbjct: 169 LRGTKITDGGLREI-RIMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLK 227
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L L+ ++LS T + D L+ LA L L+SL L+ +T TG+ L L L L+
Sbjct: 228 ELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILE 287
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L G +T G +L L L + +TD G+K I L +L L+L +
Sbjct: 288 LTGTMVTGGGLKHLSTLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLYRT 339
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 126/238 (52%), Gaps = 3/238 (1%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G + ++ L ++D + + + L L+L +TD L HL LT L +LNL
Sbjct: 43 GVVTHVMLRGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTK 102
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
I D G L L L +NLS T ++D L+++A L +L +L+L +T+ GL LT L
Sbjct: 103 ITDAGPTELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-L 161
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
T + L L G +ITD G +R ++ L++ G LTD G+K + +T L+LS +
Sbjct: 162 TKMRSLSLRGTKITDGGLREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLS-DT 219
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T L+ ++ L L++S +++ AGL+HL PLK L SL L VT +K L
Sbjct: 220 KVTSNGLKELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKEL 277
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 150/300 (50%), Gaps = 4/300 (1%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
++D L+ L L+ LT L + +T G+K A L L L+L G L
Sbjct: 55 VTDADLKALAPLTGLTDLDLS-STPVTDAGLKHLAPLTKLTALNLGGTKITDAGPTELAP 113
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L LN+ +TD+ +K ++ L L +L +S + VT++G+ +L L K+ L+L G
Sbjct: 114 LAVLTDLNLS-STQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSLSLRG 171
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+T L + + S+ L+L+ L+D+G + + L+L ++T L L
Sbjct: 172 TKITDGGLREIRIM-SVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLKELA 230
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L+ L+L +GD GL +L L LES+ L+ TG++ +++LA L L+ L L
Sbjct: 231 SQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILELTG 290
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+T GL L++L L L L A +TD G + + K L +L++ +T AGV ++
Sbjct: 291 TMVTGGGLKHLSTLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLYRTKVTGAGVAELR 350
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L + +TD L AL LTGLT LDL +TD+G +L L +L + G +TDAG
Sbjct: 50 LRGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTKITDAGPT 109
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+ L+ LT LNLS + +TD L+ ++ L LV+L++S++ +T+AGL HL L +RSL
Sbjct: 110 ELAPLAVLTDLNLS-STQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSL 167
Query: 451 TLESCKVTANDIKRLQ 466
+L K+T ++ ++
Sbjct: 168 SLRGTKITDGGLREIR 183
>gi|87311782|ref|ZP_01093896.1| hypothetical protein DSM3645_04405 [Blastopirellula marina DSM
3645]
gi|87285456|gb|EAQ77376.1| hypothetical protein DSM3645_04405 [Blastopirellula marina DSM
3645]
Length = 427
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 165/299 (55%), Gaps = 1/299 (0%)
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+D ++PLS L ++K L++ + VTD I L ++ L + ++ A ++ LSA
Sbjct: 70 SFSDEQLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTTISDAGIEKLSA 129
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L L L L R +S+ E ++ L+ L+L +++ITD + + + N+E L L+
Sbjct: 130 LKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGA 189
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
+GDEGL +LTGL+ L+ +N+ T ++D + +A L++L++L + +T G+ L
Sbjct: 190 IVGDEGLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTALTTEGMEYLAP 249
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT + L+L A++ D G +L+ K L++L + + AG++++ + +L L++S+
Sbjct: 250 LTKVKTLELMRAQVKDDGFVHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSET 309
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
D L + L LN+ +++T GL H+K L N+++L L+ +T + ++ L
Sbjct: 310 P-FGDDGLIHVGKFKNLEKLNLWFTKVTPDGLPHIKDLTNMKTLILDYQGITDDSLENL 367
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/339 (31%), Positives = 167/339 (49%), Gaps = 30/339 (8%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNA------ 118
G+DVTD + +L +L+ DF+ ISD G+E L L +L+ L RR N
Sbjct: 92 GADVTDKTIDNLLQMKDLR--DFSAANTTISDAGIEKLSALKDLSVLQLRRTNISNKSLE 149
Query: 119 -----------------ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
IT GM+ A + N+ L LE GL +L GL KL+ LN
Sbjct: 150 SMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGAIVGDEGLAHLTGLSKLKFLN 209
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++ N +TD+ K ++ LTNL++L+ + + +T G+ YL L K+ L L V
Sbjct: 210 VRGTN-VTDAGFKSIANLTNLETLETNGTALTTEGMEYLAPLTKVKTLELMRAQVKDDGF 268
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
L + L L L + +++ G E I +LK L++ D+ L+H+ NLE L
Sbjct: 269 VHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSETPFGDDGLIHVGKFKNLEKL 328
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTG 340
NL + +GL ++ LTN++++ L + GI+D SL L G+ L++L+L D IT+
Sbjct: 329 NLWFTKVTPDGLPHIKDLTNMKTLILDYQGITDDSLENLVGMQKLQTLSLKDNDMITNES 388
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
+ L L GL + + +I G A L+ K L LE+
Sbjct: 389 IKYLKQLKGLKKISITFTQIDSRGVAELK--KELPGLEV 425
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 177/351 (50%), Gaps = 29/351 (8%)
Query: 150 NLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L+ L KL+ + I + +TD + L + +L+ + + ++D+GI L L+ L+
Sbjct: 75 QLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTTISDAGIEKLSALKDLS 134
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
+L L ++ L+S+ L L YL+L ++D G E +K+ +++VL L + DE
Sbjct: 135 VLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGAIVGDE 194
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L HL GL+ L+ LN+ + D G ++ LTNLE++ + T ++ + LA L+ +K
Sbjct: 195 GLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTALTTEGMEYLAPLTKVK 254
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARIT------------------------DS 363
+L L Q+ D G L + L +L L R+ D
Sbjct: 255 TLELMRAQVKDDGFVHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSETPFGDD 314
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G ++ FKNL L + +T G+ HIKDL+++ L L +TD +LE + G+ L
Sbjct: 315 GLIHVGKFKNLEKLNLWFTKVTPDGLPHIKDLTNMKTLILDYQ-GITDDSLENLVGMQKL 373
Query: 424 VSLNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+L++ N IT+ +++LK LK L+ +++ ++ + + L+ ++LP L
Sbjct: 374 QTLSLKDNDMITNESIKYLKQLKGLKKISITFTQIDSRGVAELK-KELPGL 423
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 123/238 (51%), Gaps = 1/238 (0%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G + +++ SD+ E SK+ +K+L + ++TD+ + +L + +L + +
Sbjct: 59 GVVTVADMSVASFSDEQLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTT 118
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
I D G+ L+ L +L + L T IS+ SL + L L+ L+L ITD G+ + +
Sbjct: 119 ISDAGIEKLSALKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKM 178
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ L L GA + D G A+L L+ L + G +TDAG K I +L++L L +
Sbjct: 179 PNMEVLRLEGAIVGDEGLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLE-TNGT 237
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
LT + +E ++ LT + +L + +++ G HLK +K L++L L +V ++ L
Sbjct: 238 ALTTEGMEYLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQNLMLRQTRVAGAGMENL 295
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 130/258 (50%), Gaps = 5/258 (1%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
+Y + D M+++A ++ + L G+ V D GL HL S L+ L+ ++D G
Sbjct: 163 RYDDITDAGMEIVAKM-PNMEVLRLEGAIVGDEGLAHLTGLSKLKFLNVR-GTNVTDAGF 220
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ + L+NL +L A+T +GM+ A L + L+L R G V+LK + +L++
Sbjct: 221 KSIANLTNLETLE-TNGTALTTEGMEYLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQN 279
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L ++ + + M+ L G+ LKSL +S + D G+ ++ + L LNL VT
Sbjct: 280 LMLRQTR-VAGAGMENLIGIDTLKSLDVSETPFGDDGLIHVGKFKNLEKLNLWFTKVTPD 338
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNL 278
L + L ++ L L+ ++DD E + L+ L+L N+ IT+E + +LK L L
Sbjct: 339 GLPHIKDLTNMKTLILDYQGITDDSLENLVGMQKLQTLSLKDNDMITNESIKYLKQLKGL 398
Query: 279 ESLNLDSCGIGDEGLVNL 296
+ +++ I G+ L
Sbjct: 399 KKISITFTQIDSRGVAEL 416
>gi|442319589|ref|YP_007359610.1| hypothetical protein MYSTI_02610 [Myxococcus stipitatus DSM 14675]
gi|441487231|gb|AGC43926.1| hypothetical protein MYSTI_02610 [Myxococcus stipitatus DSM 14675]
Length = 600
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 127/441 (28%), Positives = 210/441 (47%), Gaps = 34/441 (7%)
Query: 36 LCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
LC + GV + + +G+SL+++ SGS + D+ L L+D + ++L + +++
Sbjct: 97 LCF-EATGVPEPTLLAALVRGTSLVTLRASGSSLGDAHLGALRDFTAWEALHLD-GTRVT 154
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
D GL HL GL L+ + AI+ +G+ GL L ++ L + GL L
Sbjct: 155 DAGLPHLSGLRRLSVVRLE-ETAISDKGLAFLEGLTTLRRVGLAGTSVSAQGLRFLSAQA 213
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+LE L++ + TD + +L +L +S ++VTD+G+A L+ + LT
Sbjct: 214 ELEWLDL--SDTSTDDRVLAWVSGAHLHTLILSGTQVTDAGLARLRDMPHLT-------- 263
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+L L R L+D G + +L+ L+LG ++TD L+HL
Sbjct: 264 ----------------WLGLARTGLTDGGLAPIGALRALEALHLGETQVTDAGLLHLAES 307
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+LE+L L + GL +L GLT LE ++L T + D ++R L GL +L+ L L
Sbjct: 308 KSLEALVLTKTRLHGPGLQHLAGLTRLELLHLDDTRLDDAAMRHLRGLVALRELELSRTL 367
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
IT GLA+L +L+ L L + G +T A L+ + L L++ + + H+
Sbjct: 368 ITGAGLASLDALSALERLGVSGLAVTADALAVLQKTERLTRLDLSHTPVGPEALAHVP-- 425
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
S L L+LS+ D+ L + L+ L SL + +T GL L L L +L L
Sbjct: 426 SGLRELDLSRTA-FNDEWLPSLRRLSRLQSLRAERTLLTDLGLGQLGELTELAALHLSGT 484
Query: 456 KVTANDIKRLQSRDLPNLVSF 476
V + + LQ LP+L
Sbjct: 485 LVNGSGLAHLQR--LPHLAHL 503
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 181/404 (44%), Gaps = 58/404 (14%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L ++ LSG+ VTD+GL L+D +L L ++DGGL + L L +L
Sbjct: 235 GAHLHTLILSGTQVTDAGLARLRDMPHLTWLGLART-GLTDGGLAPIGALRALEALHLGE 293
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ A +L L L + TR+HG GL +L GL +LE L++ + D+ M+
Sbjct: 294 TQ-VTDAGLLHLAESKSLEALVLTK-TRLHGPGLQHLAGLTRLELLHLD-DTRLDDAAMR 350
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L GL L+ L++S + +T +G+A L L L L + G VTA D+L+ L
Sbjct: 351 HLRGLVALRELELSRTLITGAGLASLDALSALERLGVSGLAVTA---DALAVL------- 400
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
K L L+L + E L H+ + L L+L DE L
Sbjct: 401 --------------QKTERLTRLDLSHTPVGPEALAHVP--SGLRELDLSRTAFNDEWLP 444
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
+L L+ L+S+ T ++D L +L L+ L +L+L + +GLA L L L HLD
Sbjct: 445 SLRRLSRLQSLRAERTLLTDLGLGQLGELTELAALHLSGTLVNGSGLAHLQRLPHLAHLD 504
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L + L+ L L + G L DA + H+
Sbjct: 505 LGATWLEAHYTPALQGLTRLTWLSLARGRLGDAALGHLPP-------------------- 544
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
GL +L ++ + +T AGL L+ L +LR L L VT
Sbjct: 545 -------GLHTLYLTRTGVTDAGLDSLRSLPHLRQLDLRGTAVT 581
>gi|46447554|ref|YP_008919.1| hypothetical protein pc1920 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401195|emb|CAF24644.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 517
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 155/295 (52%), Gaps = 33/295 (11%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK C NL+ L C I+D GL HL L+ L
Sbjct: 238 LTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTALQ------------------- 278
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LDL +C ++ G GL +L L L+ L++ C+ +TD+ + L+ LT L+ L +
Sbjct: 279 ------HLDLSQCRKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNL 332
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C +TD+G+ +L L L L+L C + A L L L +L YL+L+ C L+D G
Sbjct: 333 SDCENLTDAGLVHLSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAG 392
Query: 245 CEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNL 302
+ L+ LNL + E +TD L HL L L+ LNL C + D GL +LT LT L
Sbjct: 393 LAHLKPLMRLQYLNLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTAL 452
Query: 303 ESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 355
+ ++LS ++D L L L+ L+ L+L + +TD GLA LT LTGL HLDL
Sbjct: 453 QHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTGLQHLDL 507
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 154/294 (52%), Gaps = 30/294 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK L+ L+++ C ITD + L+ LT L+ L +S C K+T G+A+L L
Sbjct: 241 AHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTALQHLDLSQCRKLTGIGLAHLTPLT 300
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF- 261
L L+L GC +T A L L+ L +L +LNL+ C+ L+D G S + +L+ L+L +
Sbjct: 301 ALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVHLSPLIALQHLDLSYC 360
Query: 262 NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRK 319
+ L HLK LT L+ L+L C + D GL +L L L+ +NL + ++D L
Sbjct: 361 WRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYLNLRYCENLTDAGLAH 420
Query: 320 LAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
L L +L+ LNL + +TD GL LT LT L HLDL R
Sbjct: 421 LTPLMALQHLNLSECYHLTDAGLTHLTPLTALQHLDLSHCR------------------- 461
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
LTDAG+ H+ L+ L L+LS NLTD L ++ LTGL L++S +
Sbjct: 462 ----SLTDAGLAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTGLQHLDLSRCK 511
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 110/309 (35%), Positives = 158/309 (51%), Gaps = 31/309 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E+LN +TD+ + L NLK L + +C +TD G+A+L L L L+L C
Sbjct: 226 KIEALNFSENAYLTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTALQHLDLSQC 285
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
+T L L+ L +L +L+L+ C L+D G + + +L+ LNL E +TD LVH
Sbjct: 286 RKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVH 345
Query: 272 LKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
L L L+ L+L C + GL +L LT L+ ++LS ++D L L L L+ L
Sbjct: 346 LSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYL 405
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
NL +TD GLA LT L L HL+L Y LTDAG
Sbjct: 406 NLRYCENLTDAGLAHLTPLMALQHLNL--------SECY---------------HLTDAG 442
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNL 447
+ H+ L++L L+LS +LTD L ++ LT L L++S + +T AGL L PL L
Sbjct: 443 LTHLTPLTALQHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTGL 502
Query: 448 RSLTLESCK 456
+ L L CK
Sbjct: 503 QHLDLSRCK 511
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 151/305 (49%), Gaps = 35/305 (11%)
Query: 11 FNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SD 68
F+E Y LT+ L A + C L+ L L + D + + + ++L +DLS
Sbjct: 232 FSENAY---LTDAHLLALKVCKNLKVLHLEACQAITDDGLAHL-TPLTALQHLDLSQCRK 287
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T GL HL + LQ LD + C ++D GL HL L+ L L+ +T G+ +
Sbjct: 288 LTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVHLS 347
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LI L LDL C R+ + GL +LK L L+ L++
Sbjct: 348 PLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLS------------------------ 383
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
C +TD+G+A+LK L +L LNL C +T A L L+ L +L +LNL+ C L+D G
Sbjct: 384 HCINLTDAGLAHLKPLMRLQYLNLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGL 443
Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLE 303
+ + +L+ L+L +TD L HL LT L+ L+L C + D GL LT LT L+
Sbjct: 444 THLTPLTALQHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTGLQ 503
Query: 304 SINLS 308
++LS
Sbjct: 504 HLDLS 508
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 121/221 (54%), Gaps = 19/221 (8%)
Query: 247 KFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNL 302
+FSK K+ L F+E +TD L+ LK NL+ L+L++C I D+GL +LT LT L
Sbjct: 222 RFSK----KIEALNFSENAYLTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTAL 277
Query: 303 ESINLS----FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 357
+ ++LS TGI L L L++L+ L+L +TD GLA L LT L HL+L
Sbjct: 278 QHLDLSQCRKLTGIG---LAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSD 334
Query: 358 AR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+TD+G +L L+ L++ L AG+ H+K L++L L+LS NLTD L
Sbjct: 335 CENLTDAGLVHLSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLA 394
Query: 416 LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
+ L L LN+ +T AGL HL PL L+ L L C
Sbjct: 395 HLKPLMRLQYLNLRYCENLTDAGLAHLTPLMALQHLNLSEC 435
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
+GL HLK + LQ LD + CI ++D GL HL+ L L L+ R +T G+ L+
Sbjct: 366 AGLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYLNLRYCENLTDAGLAHLTPLM 425
Query: 132 NLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-C 189
L L+L C + GL +L L L+ L++ C +TD+ + L+ LT L+ L +S C
Sbjct: 426 ALQHLNLSECYHLTDAGLTHLTPLTALQHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSYC 485
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGC 214
+TD+G+A L L L L+L C
Sbjct: 486 KNLTDAGLARLTPLTGLQHLDLSRC 510
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL + LQ LD + C ++D GL HL L+ L L +T G+
Sbjct: 438 LTDAGLTHLTPLTALQHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSYCKNLTDAGLARLT 497
Query: 129 GLINLVKLDLERC 141
L L LDL RC
Sbjct: 498 PLTGLQHLDLSRC 510
>gi|290973802|ref|XP_002669636.1| predicted protein [Naegleria gruberi]
gi|284083186|gb|EFC36892.1| predicted protein [Naegleria gruberi]
Length = 548
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 136/421 (32%), Positives = 206/421 (48%), Gaps = 29/421 (6%)
Query: 46 DKWMDVIAS---QGSSLLSVDLSGSDVTDS--GLIHLKDCSNLQSLDFNFCI-QISDGGL 99
+KW D I + +LS+ + G ++ + G I K NL LD C +I +
Sbjct: 76 EKWTDFIERSNLEMDKVLSLTIDGVELIEEQCGTISTK-LVNLTQLDL--CRNKIKPTVV 132
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ L L+NL L+ +N I G K + L +L LDL G L L L
Sbjct: 133 KGLSSLTNLKKLNLG-HNEIGNDGAKHVSSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQ 191
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
LN+ N I D+ + +S LTNL L + +K+ +G+ L+GL+KLT L+L G +
Sbjct: 192 LNL-GNNEIGDAGAEHISSLTNLTQLNLRITKLGANGVKSLRGLKKLTELDLSGNQIGYE 250
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKF----------------SKIGSLKVLNLGFNE 263
+++LS L +L LNL +++ DG E+ S++ +L +NL N+
Sbjct: 251 GVNNLSELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAEHLSQLKNLTQINLCLNQ 310
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
I L LTNL LNL S IG +L L NL ++L + I D ++L+ L
Sbjct: 311 IGPNGAERLCELTNLTQLNLRSNLIGAIKAESLCKLENLTQLDLGYNRIEDDGAQRLSKL 370
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
L L+L QI G +L+ LT LTHLDL G I D GA +L K L L +
Sbjct: 371 KKLTQLDLSGNQIGSIGAQSLSELTNLTHLDLNGNGIED-GAQHLSKLKKLTRLGLNDNR 429
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
+ D G K++ +L+ LT L+L N + D E +S L + L++ ++ I +AG +HL+
Sbjct: 430 IGDDGAKYLSELNKLTHLSLDNN-GIGDTGAECLSKLKNITYLSLDDNEIETAGKKHLRK 488
Query: 444 L 444
L
Sbjct: 489 L 489
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 124/258 (48%), Gaps = 10/258 (3%)
Query: 203 LQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
+ K+ L ++G + C + L +L L+L R ++ + S + +LK LNLG
Sbjct: 89 MDKVLSLTIDGVELIEEQCGTISTKLVNLTQLDLCRNKIKPTVVKGLSSLTNLKKLNLGH 148
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
NEI ++ H+ LT+L +L+L GIG G L+ LTNL +NL I D ++
Sbjct: 149 NEIGNDGAKHVSSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQLNLGNNEIGDAGAEHIS 208
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
L++L LNL ++ G+ +L L LT LDL G +I G L KNL+ L +
Sbjct: 209 SLTNLTQLNLRITKLGANGVKSLRGLKKLTELDLSGNQIGYEGVNNLSELKNLKKLNLGN 268
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
+T G + + L +LT L+L E +S L L +N+ ++I G L
Sbjct: 269 NRITGDGAERLCGLENLTELDLRA---------EHLSQLKNLTQINLCLNQIGPNGAERL 319
Query: 442 KPLKNLRSLTLESCKVTA 459
L NL L L S + A
Sbjct: 320 CELTNLTQLNLRSNLIGA 337
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 143/316 (45%), Gaps = 47/316 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++L +++ D+G H+ +NL L+ ++ G++ LRGL LT L N
Sbjct: 187 TNLTQLNLGNNEIGDAGAEHISSLTNLTQLNLRIT-KLGANGVKSLRGLKKLTELDLSGN 245
Query: 117 -----------------------NAITAQGMKAFAGLINLVKLDL--------ERCTRIH 145
N IT G + GL NL +LDL + T+I+
Sbjct: 246 QIGYEGVNNLSELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAEHLSQLKNLTQIN 305
Query: 146 --------GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
G L L L LN++ N I + L L NL L + +++ D G
Sbjct: 306 LCLNQIGPNGAERLCELTNLTQLNLR-SNLIGAIKAESLCKLENLTQLDLGYNRIEDDGA 364
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L L+KLT L+L G + + SLS L +L +L+LN + +DG + SK+ L L
Sbjct: 365 QRLSKLKKLTQLDLSGNQIGSIGAQSLSELTNLTHLDLNGNGI-EDGAQHLSKLKKLTRL 423
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG-- 315
L N I D+ +L L L L+LD+ GIGD G L+ L N+ ++L I
Sbjct: 424 GLNDNRIGDDGAKYLSELNKLTHLSLDNNGIGDTGAECLSKLKNITYLSLDDNEIETAGK 483
Query: 316 -SLRKL--AGLSSLKS 328
LRKL GL S+++
Sbjct: 484 KHLRKLIRCGLCSIRT 499
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 103/249 (41%), Gaps = 46/249 (18%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD------------- 87
Y GVN+ S+ +L ++L + +T G L NL LD
Sbjct: 249 YEGVNN------LSELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAEHLSQLKNLT 302
Query: 88 -FNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
N C+ QI G E L L+NLT L+ R +N I A ++ L NL +LDL
Sbjct: 303 QINLCLNQIGPNGAERLCELTNLTQLNLR-SNLIGAIKAESLCKLENLTQLDLGYNRIED 361
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS--------------- 190
G L L KL L++ N I + LS LTNL L ++ +
Sbjct: 362 DGAQRLSKLKKLTQLDLSG-NQIGSIGAQSLSELTNLTHLDLNGNGIEDGAQHLSKLKKL 420
Query: 191 --------KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
++ D G YL L KLT L+L+ + + LS L ++ YL+L+ ++
Sbjct: 421 TRLGLNDNRIGDDGAKYLSELNKLTHLSLDNNGIGDTGAECLSKLKNITYLSLDDNEIET 480
Query: 243 DGCEKFSKI 251
G + K+
Sbjct: 481 AGKKHLRKL 489
>gi|224007994|ref|XP_002292956.1| hypothetical protein THAPSDRAFT_16210 [Thalassiosira pseudonana
CCMP1335]
gi|220971082|gb|EED89417.1| hypothetical protein THAPSDRAFT_16210 [Thalassiosira pseudonana
CCMP1335]
Length = 301
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 128/234 (54%), Gaps = 28/234 (11%)
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG---LTNLESIN 306
KI +LK L L ++ + D L H + L LE LNLDSC +GD + +L + N+ S++
Sbjct: 69 KINNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNVIPNITSLD 128
Query: 307 LSFTGISD------------------------GSLRKLAGLSSLKSLNLDARQITDTGLA 342
L+ ISD LR L+ ++ L+ LNLD+R+I D GL
Sbjct: 129 LADADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLK 188
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
L L L LD+F R+TD G +R K L+SLE+CGGG+ D G H+ + +LT LN
Sbjct: 189 HLRDLP-LQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLTSLN 247
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
LSQN +T++ ++ L+ L +LN+SN+ +T LR+ L L+SL L C+
Sbjct: 248 LSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLALYGCR 301
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCSKVTDSGIAYLKGLQ 204
L + + L LE LN+ C+ + D + L+ + N+ SL ++ + ++D G++ + +
Sbjct: 88 LAHFRSLPMLEELNLDSCH-LGDWSIAHLADNNVIPNITSLDLADADISDFGLSKIAQFK 146
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
++ L+L C VT+A L LS++ L LNL+ ++ D+G + + L+ L++ +
Sbjct: 147 QMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLKHLRDL-PLQSLDVFSGRV 205
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG-ISDGSLRKLAGL 323
TD ++ + L+SL L G+GD G +L + NL S+NLS I++ LA L
Sbjct: 206 TDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLTSLNLSQNERITNRGAASLAAL 265
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
S+LK+LNL +T L + L+ L L L+G R
Sbjct: 266 SNLKALNLSNTAVTPDALRYFSDLSKLKSLALYGCR 301
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF------- 113
S+DL+ +D++D GL + ++ L +C ++ GL HL ++ L L+
Sbjct: 126 SLDLADADISDFGLSKIAQFKQMKRLSLFYC-NVTSAGLRHLSSMTKLEVLNLDSREIGD 184
Query: 114 ---RRNNAITAQGMKAFAG--------LINLVKL--DLERCTRIHG--GLVNLKGLMKLE 158
+ + Q + F+G I L+K LE C G G +L + L
Sbjct: 185 EGLKHLRDLPLQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLT 244
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
SLN+ IT+ L+ L+NLK+L +S + VT + Y L KL L L GC
Sbjct: 245 SLNLSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLALYGC 300
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 20/204 (9%)
Query: 278 LESLNLDSCG-IGDEGLVNLTGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L +L+L +C + DE +VN++ L T+L ++NL G R L S L
Sbjct: 1 LRTLSLANCRRLTDEAVVNVSHLSTSLVAVNL-------GGCRCLTDRSLEALGGLLGLT 53
Query: 336 ITDTGLAALTS-----LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
D L S + L L+L + + D+ A+ R+ L L + L D +
Sbjct: 54 KLDLSQVCLRSSWQGKINNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIA 113
Query: 391 HIKD---LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
H+ D + ++T L+L+ + +++D L I+ + L++ +TSAGLRHL + L
Sbjct: 114 HLADNNVIPNITSLDLA-DADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKL 172
Query: 448 RSLTLESCKVTANDIKRLQSRDLP 471
L L+S ++ +K L RDLP
Sbjct: 173 EVLNLDSREIGDEGLKHL--RDLP 194
>gi|168701031|ref|ZP_02733308.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 389
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 146/289 (50%), Gaps = 23/289 (7%)
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
TD+G+ L LT LNL VT A L ++ L LN++ Q++D+G + + +
Sbjct: 55 TDAGLKELSLFAGLTNLNLTNTQVTDAALKDVARFPKLTVLNVSYTQITDEGLREIAGLT 114
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
L L L + +++ L HL LT L +L+L S + D GL L G+ L ++L T +
Sbjct: 115 ELTDLVLDYTKVSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRETSV 174
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
+D L+++A LS LK+L L +T GL L LT L L L G RIT G + L K
Sbjct: 175 TDAGLKEIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGDGLSELTGLK 234
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ-----------------------NCNL 409
+LR LE+ G LTDAG+K + +L L LS + +
Sbjct: 235 SLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKI 294
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
TD L+ I+ LT L L + ++ +T AG+R+L PL LR L L KVT
Sbjct: 295 TDADLKEIAALTNLTGLTMRDTPVTDAGVRNLAPLTKLRRLNLTHTKVT 343
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 170/338 (50%), Gaps = 29/338 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +++L+ + VTD+ L + L L+ ++ QI+D GL + GL+ LT L
Sbjct: 66 AGLTNLNLTNTQVTDAALKDVARFPKLTVLNVSYT-QITDEGLREIAGLTELTDLV---- 120
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
LD T++ G GL +L L KL +L++ +TD+ ++
Sbjct: 121 -------------------LD---YTKVSGSGLKHLAALTKLRTLSL-GSKIVTDAGLRG 157
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L G+ L+ L + + VTD+G+ + L +L L L PVT L L+ L L +L L
Sbjct: 158 LVGVRGLRQLDLRETSVTDAGLKEIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFL 217
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+ +++ DG + + + SL++L LG +TD L L G L L L + + GL
Sbjct: 218 SGTRITGDGLSELTGLKSLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKE 277
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L L L ++L T I+D L+++A L++L L + +TD G+ L LT L L+L
Sbjct: 278 LAALKQLSGLDLGSTKITDADLKEIAALTNLTGLTMRDTPVTDAGVRNLAPLTKLRRLNL 337
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
++T++ A L FK+L S+++ +T+ G K +K
Sbjct: 338 THTKVTNACAKTLATFKHLTSVDLHQTDVTEEGGKELK 375
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 159/318 (50%), Gaps = 9/318 (2%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
FAGL NL +L L ++ KL LN+ + ITD ++ ++GLT L L
Sbjct: 65 FAGLTNL---NLTNTQVTDAALKDVARFPKLTVLNVSYTQ-ITDEGLREIAGLTELTDLV 120
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+ +KV+ SG+ +L L KL L+L VT A L L + L L+L ++D G +
Sbjct: 121 LDYTKVSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRETSVTDAGLK 180
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN 306
+ + + LK L L +T L L LT L+ L L I +GL LTGL +L +
Sbjct: 181 EIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGDGLSELTGLKSLRLLE 240
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
L T ++D L++LAG +L L L ++T GL L +L L+ LDL +ITD+
Sbjct: 241 LGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKITDADLK 300
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN--CNLTDKTLELISGLTGLV 424
+ NL L + +TDAGV+++ L+ L LNL+ N KTL LT
Sbjct: 301 EIAALTNLTGLTMRDTPVTDAGVRNLAPLTKLRRLNLTHTKVTNACAKTLATFKHLT--- 357
Query: 425 SLNVSNSRITSAGLRHLK 442
S+++ + +T G + LK
Sbjct: 358 SVDLHQTDVTEEGGKELK 375
>gi|406831735|ref|ZP_11091329.1| hypothetical protein SpalD1_08854 [Schlesneria paludicola DSM
18645]
Length = 422
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 187/373 (50%), Gaps = 9/373 (2%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+E D A + + P N+K + ++ S +L S+D+S +T+ GL L L+
Sbjct: 45 VERSSDRATVRVSFNEGPRFNEKHLHLLKSL-PNLTSLDVSAIVITEDGLRELGQLKFLR 103
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL--DLERCT 142
L + I+D GL L L +LT L+ ++T +G+K F + +++ DLE
Sbjct: 104 RLVVD-GRSITDEGLMELVDLRSLTELTIS-ATSVTDEGLKQFQSFLPQLRILSDLESVR 161
Query: 143 RI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
R+ GG + + ++ +++ D D++ L L +L+SL + + +TD + +
Sbjct: 162 RLAGFGGEIE-RSDGRVIRISLHNKPQFGDGDIESLMSLRHLESLDLGGTSITDGALLTV 220
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
LQKL L L +T L +L L L L+L+R ++ D G ++ K+ L L L
Sbjct: 221 GRLQKLIQLQLPSTRITDRGLKALRNLKQLSILDLSRTRIGDVGLDEIKKL-PLTSLMLH 279
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
++TD L+ L+ L ++ L L C I D GLV L NL + L+ T I+DG LR +
Sbjct: 280 DTQVTDFGLLALQDLKEVQFLGLYKCAITDTGLVTLGRFQNLSELCLNSTRITDGGLRNV 339
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
L L+ L L QITD GL L L L L L G R+TD L+ ++NL +++
Sbjct: 340 GQLRKLRILQLGDSQITDAGLLELRHLNNLVGLVLRGTRVTDDSVNTLKRYQNLVHIDLR 399
Query: 381 GGGLTDAGVKHIK 393
G T+AGV +K
Sbjct: 400 QTGFTEAGVTELK 412
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 170/379 (44%), Gaps = 13/379 (3%)
Query: 99 LEHLRGLSNLTS------LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
LE L G+ +S +SF + + L NL LD+ GL L
Sbjct: 38 LERLGGIVERSSDRATVRVSFNEGPRFNEKHLHLLKSLPNLTSLDVSAIVITEDGLRELG 97
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLL-N 210
L L L + ITD + L L +L L IS + VTD G+ + L +L +L +
Sbjct: 98 QLKFLRRLVVDG-RSITDEGLMELVDLRSLTELTISATSVTDEGLKQFQSFLPQLRILSD 156
Query: 211 LEGCPVTAACLDSLS-ALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
LE A + + G + ++L N+ Q D E + L+ L+LG ITD
Sbjct: 157 LESVRRLAGFGGEIERSDGRVIRISLHNKPQFGDGDIESLMSLRHLESLDLGGTSITDGA 216
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L+ + L L L L S I D GL L L L ++LS T I D L ++ L L S
Sbjct: 217 LLTVGRLQKLIQLQLPSTRITDRGLKALRNLKQLSILDLSRTRIGDVGLDEIKKLP-LTS 275
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L L Q+TD GL AL L + L L+ ITD+G L F+NL L + +TD G
Sbjct: 276 LMLHDTQVTDFGLLALQDLKEVQFLGLYKCAITDTGLVTLGRFQNLSELCLNSTRITDGG 335
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
++++ L L +L L + +TD L + L LV L + +R+T + LK +NL
Sbjct: 336 LRNVGQLRKLRILQLG-DSQITDAGLLELRHLNNLVGLVLRGTRVTDDSVNTLKRYQNLV 394
Query: 449 SLTLESCKVTANDIKRLQS 467
+ L T + L++
Sbjct: 395 HIDLRQTGFTEAGVTELKA 413
>gi|149174540|ref|ZP_01853166.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148846650|gb|EDL60987.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 309
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 148/263 (56%), Gaps = 1/263 (0%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
N+ + S SK+ D+G+ YL L KL L+L G VT + L +L SL + L+ +
Sbjct: 39 NISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIPV 98
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
SD G +F K+ +L++LNL ++TD L HLK L +L+ L L I +GL +L+GL
Sbjct: 99 SDSGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLK 158
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
+LE++ LS T I+D +L L L L+ L L QITD GL + LT L L L +I
Sbjct: 159 SLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQI 218
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD G YL K++ LE+ +T+AG+ IK L ++ +NL +N +++DK + + +
Sbjct: 219 TDDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLENIVDMNL-RNTDVSDKCITSLKKM 277
Query: 421 TGLVSLNVSNSRITSAGLRHLKP 443
L +L + + IT G+ L+
Sbjct: 278 KNLGTLYIDGTEITEEGIAKLEK 300
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 1/250 (0%)
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
+ GLV L L KL L++ +TD M L L +L+ + + V+DSG+A K L
Sbjct: 51 VDAGLVYLGRLSKLRKLDLSGSK-VTDDGMVHLKSLKSLREITLHGIPVSDSGLAEFKKL 109
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
L +LNL VT A L L +L SL L L +++ DG S + SL+ L L +
Sbjct: 110 SNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLKSLETLGLSETQ 169
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
ITD+ L HLK L L L L I DEGL + GLT L+ + L T I+D L+ L +
Sbjct: 170 ITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKM 229
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
++ L L+ QIT+ G++ + L + ++L ++D L+ KNL +L I G
Sbjct: 230 KDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKKMKNLGTLYIDGTE 289
Query: 384 LTDAGVKHIK 393
+T+ G+ ++
Sbjct: 290 ITEEGIAKLE 299
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 130/231 (56%), Gaps = 1/231 (0%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G++ ++ + +L D G ++ L+ L+L +++TD+ +VHLK L +L + L
Sbjct: 38 GNISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIP 97
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ D GL L+NLE +NLS T ++D L+ L L SLK L L +IT GLA L+ L
Sbjct: 98 VSDSGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGL 157
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L L L +ITD A+L+ K LR L + +TD G+K IK L+ L L L +N
Sbjct: 158 KSLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWL-RNT 216
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+TD L+ + + + L +++++IT+AG+ +K L+N+ + L + V+
Sbjct: 217 QITDDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVS 267
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 127/240 (52%), Gaps = 3/240 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +DLSGS VTD G++HLK +L+ + + I +SD GL + LSNL L+ R
Sbjct: 62 SKLRKLDLSGSKVTDDGMVHLKSLKSLREITLH-GIPVSDSGLAEFKKLSNLEILNLSRT 120
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K L +L +L L GL +L GL LE+L + ITD + L
Sbjct: 121 K-VTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLKSLETLGLSETQ-ITDDALAHL 178
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L+ L + +++TD G+ +KGL +L L L +T L L + + +L LN
Sbjct: 179 KTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKMKDMEWLELN 238
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q+++ G + + ++ +NL +++D+C+ LK + NL +L +D I +EG+ L
Sbjct: 239 DTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKKMKNLGTLYIDGTEITEEGIAKL 298
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 140/283 (49%), Gaps = 27/283 (9%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
V SGS + D+GL++L S L+ LD + +++D G+ HL+ L +L ++ ++
Sbjct: 43 VSFSGSKLVDAGLVYLGRLSKLRKLDLSGS-KVTDDGMVHLKSLKSLREITL-HGIPVSD 100
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+ F L NL L+L R +TD+ +K L L +
Sbjct: 101 SGLAEFKKLSNLEILNLSRTK-------------------------VTDAGLKHLKSLDS 135
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK L ++ ++T G+A+L GL+ L L L +T L L L L L L Q++
Sbjct: 136 LKELFLTGLEITADGLAHLSGLKSLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQIT 195
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
D+G ++ + L+ L L +ITD+ L +L + ++E L L+ I + G+ + L N
Sbjct: 196 DEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLEN 255
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ +NL T +SD + L + +L +L +D +IT+ G+A L
Sbjct: 256 IVDMNLRNTDVSDKCITSLKKMKNLGTLYIDGTEITEEGIAKL 298
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 25/120 (20%)
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
++ + G+++ D+G YL LR L++ G +TD G+ H+K L SL + L
Sbjct: 40 ISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLH----- 94
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 469
+ VS+S GL K L NL L L KVT +K L+S D
Sbjct: 95 ---------------GIPVSDS-----GLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLD 134
>gi|383455271|ref|YP_005369260.1| hypothetical protein COCOR_03284 [Corallococcus coralloides DSM
2259]
gi|380733131|gb|AFE09133.1| leucine-rich repeat-containing protein [Corallococcus coralloides
DSM 2259]
Length = 614
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 130/409 (31%), Positives = 204/409 (49%), Gaps = 6/409 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+S++S+ LS + + D L L + + LQ+L + +++D GL L+G+ +L L
Sbjct: 129 TSVVSLHLSETALGDEHLAALANATRLQALHLD-GTRVTDAGLASLQGMPHLAVLRLD-A 186
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A++ +G+ A L L +L L + GL L +LE L++ + D+ + L
Sbjct: 187 TAVSDRGLALLASLTTLRRLSLSGTSVSPRGLGLLAAQTELEWLDLS-DTTVDDTVLASL 245
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
G L++L +S + VT++G+ L+ + L L L V+ A L L AL L L+L
Sbjct: 246 PG-ERLRTLVMSGTHVTNAGLGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLG 304
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++D G +++ +L+VL L I + HL GLT LE L+LD IG+ L +L
Sbjct: 305 STGVTDAGLIHLARLPALRVLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHL 364
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
GL +L + LS T ++ L L+GL +L+SL L + D LAAL L L+ LDL
Sbjct: 365 QGLQHLRDLELSRTAVTGSGLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLS 424
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
RI L + LR L++ D V ++ + L L + LTD L
Sbjct: 425 ATRIGPEALKQLGSRMVLRHLDLSRTDFNDGWVATLQTFTQLQSLRAIRTI-LTDLGLGQ 483
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+S L L SL VS + I+ +GL L+ L +L L L +T +D RL
Sbjct: 484 LSELRELESLQVSGNPISGSGLVPLQKLPHLVKLDLGGTWMT-DDGARL 531
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 186/406 (45%), Gaps = 52/406 (12%)
Query: 47 KWMD---------VIAS-QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
+W+D V+AS G L ++ +SG+ VT++GL L+ L+ L +SD
Sbjct: 228 EWLDLSDTTVDDTVLASLPGERLRTLVMSGTHVTNAGLGALRRMPALRWLGLART-SVSD 286
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC-----TRIHG-GLVN 150
GL HL L L +L A GLI+L +L R TRI G G+ +
Sbjct: 287 AGLAHLGALRMLDALHLGSTGVTDA-------GLIHLARLPALRVLVLSKTRIRGPGVRH 339
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L GL +LE L++ I ++ ++ L GL +L+ L++S + VT SG+ L GLQ L L
Sbjct: 340 LAGLTQLEVLHLD-DTSIGNAALRHLQGLQHLRDLELSRTAVTGSGLPALSGLQALESLG 398
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L G + A L +L L L L+L+ ++ G E ++GS VL
Sbjct: 399 LSGLALEDASLAALEPLERLSRLDLSATRI---GPEALKQLGSRMVLR------------ 443
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L+L D + L T L+S+ T ++D L +L+ L L+SL
Sbjct: 444 ---------HLDLSRTDFNDGWVATLQTFTQLQSLRAIRTILTDLGLGQLSELRELESLQ 494
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ I+ +GL L L L LDL G +TD GA L F+ L L + G + D +
Sbjct: 495 VSGNPISGSGLVPLQKLPHLVKLDLGGTWMTDDGARLLAGFEKLSWLSLAGTRIGDESLV 554
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
H+ S LTL L +TD + + L L +++ + ++ A
Sbjct: 555 HLPG-SLLTLYLL--RTKVTDAGMPALHRLPLLREIDLRETAVSEA 597
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 147/303 (48%), Gaps = 2/303 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ D + L+ T L++L + ++VTD+G+A L+G+ L +L L+ V+ L L+
Sbjct: 139 TALGDEHLAALANATRLQALHLDGTRVTDAGLASLQGMPHLAVLRLDATAVSDRGLALLA 198
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L +L L+L+ +S G + L+ L+L + D L L G L +L +
Sbjct: 199 SLTTLRRLSLSGTSVSPRGLGLLAAQTELEWLDLSDTTVDDTVLASLPG-ERLRTLVMSG 257
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+ + GL L + L + L+ T +SD L L L L +L+L + +TD GL L
Sbjct: 258 THVTNAGLGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLGSTGVTDAGLIHLA 317
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L L RI G +L L L + + +A ++H++ L L L LS+
Sbjct: 318 RLPALRVLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHLQGLQHLRDLELSR 377
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T L +SGL L SL +S + A L L+PL+ L L L + ++ +K+L
Sbjct: 378 TA-VTGSGLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLSATRIGPEALKQL 436
Query: 466 QSR 468
SR
Sbjct: 437 GSR 439
>gi|290970571|ref|XP_002668179.1| predicted protein [Naegleria gruberi]
gi|284081412|gb|EFC35435.1| predicted protein [Naegleria gruberi]
Length = 592
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 198/400 (49%), Gaps = 4/400 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+SG+ + D G+ + + L SLD + + I G + + + LTSL N
Sbjct: 183 LTSLDISGNRIGDEGVKSISEMEQLISLDISTNV-IGGEGAKFISEMKQLTSLDIFYNR- 240
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G K + + L L++ G + + +L SLNI N I +K +SG
Sbjct: 241 IGGEGAKLISEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNIS-GNLIGVEGVKSISG 299
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL IS + + D G + +++LT L++ + + S+S + L +++
Sbjct: 300 MKQLTSLNISGNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNN 359
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D+G + S + L L + N I E + + + L SLN+ I EG ++G
Sbjct: 360 LIYDEGAKSISGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISG 419
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+ + GI D ++ ++ + L SL++ +I D G+ +++ + L LD+
Sbjct: 420 MKQLTSLTIYKNGIGDEGVKSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTN 479
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I GA ++ K L SL+I G + D GVK I ++ LT LN+S N + + + IS
Sbjct: 480 VIGGEGAKFISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLNISGN-QIGVEGAKFIS 538
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ L SL++S + I AG + + +K L SL + + +++
Sbjct: 539 EMKQLTSLDISKNEIGDAGAKFISEMKQLTSLDVYANRIS 578
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 189/381 (49%), Gaps = 4/381 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L+S+D+S + + G + + L SLD F +I G + + + LTSL+
Sbjct: 202 SEMEQLISLDISTNVIGGEGAKFISEMKQLTSLDI-FYNRIGGEGAKLISEMKQLTSLNI 260
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L L++ G+ ++ G+ +L SLNI N I D
Sbjct: 261 S-TNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTSLNIS-GNLIGDEGA 318
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G+ + +++LT ++ + S+S + L L
Sbjct: 319 KLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSISGMKQLTSL 378
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ ++ +G + S+I L LN+ NEI E + G+ L SL + GIGDEG+
Sbjct: 379 TISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTIYKNGIGDEGV 438
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+++ + L S+++S I D ++ ++ + L SL++ I G ++ + LT L
Sbjct: 439 KSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSL 498
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
D+ G I D G + K L SL I G + G K I ++ LT L++S+N + D
Sbjct: 499 DISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSLDISKN-EIGDAG 557
Query: 414 LELISGLTGLVSLNVSNSRIT 434
+ IS + L SL+V +RI+
Sbjct: 558 AKFISEMKQLTSLDVYANRIS 578
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 114/421 (27%), Positives = 211/421 (50%), Gaps = 14/421 (3%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L SVD+SG+ + G + + L SL+ + I I G + + G+ +LTSL N
Sbjct: 135 LTSVDISGNRIGIEGAKSISEMKQLTSLNISNNI-IGVEGAKSISGMKHLTSLDI-SGNR 192
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I +G+K+ + + L+ LD+ T + G G + + +L SL+I + N I K +
Sbjct: 193 IGDEGVKSISEMEQLISLDI--STNVIGGEGAKFISEMKQLTSLDI-FYNRIGGEGAKLI 249
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S + L SL IS +++ G + +++LT LN+ G + + S+S + L LN++
Sbjct: 250 SEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTSLNIS 309
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ D+G + S++ L L++ N I DE + + + L S ++ + I DEG ++
Sbjct: 310 GNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSI 369
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+G+ L S+ +S I ++ ++ + L SLN+ +I G ++ + LT L ++
Sbjct: 370 SGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTIY 429
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I D G + K L SL+I + D GVK I ++ L L++S N + + +
Sbjct: 430 KNGIGDEGVKSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNV-IGGEGAKF 488
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSRDL 470
IS + L SL++S + I G++ + +K L SL + ++ +++K+L S D+
Sbjct: 489 ISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSLDI 548
Query: 471 P 471
Sbjct: 549 S 549
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 175/351 (49%), Gaps = 4/351 (1%)
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
K +G+ L +D+ G ++ + +L SLNI N I K +SG+ +L S
Sbjct: 127 KFISGMKQLTSVDISGNRIGIEGAKSISEMKQLTSLNIS-NNIIGVEGAKSISGMKHLTS 185
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L IS +++ D G+ + +++L L++ + +S + L L++ ++ +G
Sbjct: 186 LDISGNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSLDIFYNRIGGEG 245
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
+ S++ L LN+ NEI E + + L SLN+ IG EG+ +++G+ L S
Sbjct: 246 AKLISEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTS 305
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+N+S I D + ++ + L SL++ +I D G+ +++ + LT D+ I D G
Sbjct: 306 LNISGNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEG 365
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
A + K L SL I + GVK I ++ LT LN+S+N + + + ISG+ L
Sbjct: 366 AKSISGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKN-EIDGEGAKFISGMKQLT 424
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
SL + + I G++ + +K L SL + + ++ +K + ++ L+S
Sbjct: 425 SLTIYKNGIGDEGVKSISEMKQLTSLDISNNRIGDEGVKSIS--EMEQLIS 473
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 166/333 (49%), Gaps = 3/333 (0%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++S +++ G + + L SL+ + + I G++ + G+ LTSL+
Sbjct: 250 SEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNL-IGVEGVKSISGMKQLTSLNI 308
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L LD+ G+ ++ + +L S +I N I D
Sbjct: 309 S-GNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDIS-NNLIYDEGA 366
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +SG+ L SL IS +++ G+ ++ +++LT LN+ + +S + L L
Sbjct: 367 KSISGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSL 426
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ + + D+G + S++ L L++ N I DE + + + L SL++ + IG EG
Sbjct: 427 TIYKNGIGDEGVKSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGA 486
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
++ + L S+++S I D ++ ++ + L SLN+ QI G ++ + LT L
Sbjct: 487 KFISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSL 546
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
D+ I D+GA ++ K L SL++ ++D
Sbjct: 547 DISKNEIGDAGAKFISEMKQLTSLDVYANRISD 579
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 123/263 (46%), Gaps = 27/263 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ + + D G+ + + L S D + + I D G + + G+ LTSL+
Sbjct: 322 SEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNL-IYDEGAKSISGMKQLTSLTI 380
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G+K + + L L++ + G + G+ +L SL I + N I D +
Sbjct: 381 S-NNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTI-YKNGIGDEGV 438
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIA------------------------YLKGLQKLTLL 209
K +S + L SL IS +++ D G+ ++ +++LT L
Sbjct: 439 KSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSL 498
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
++ G + + S+S + L LN++ Q+ +G + S++ L L++ NEI D
Sbjct: 499 DISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSLDISKNEIGDAGA 558
Query: 270 VHLKGLTNLESLNLDSCGIGDEG 292
+ + L SL++ + I DE
Sbjct: 559 KFISEMKQLTSLDVYANRISDEA 581
>gi|296124076|ref|YP_003631854.1| ribonuclease inhibitor [Planctomyces limnophilus DSM 3776]
gi|296016416|gb|ADG69655.1| Leucine-rich repeat, ribonuclease inhibitor subtype [Planctomyces
limnophilus DSM 3776]
Length = 474
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 152/291 (52%), Gaps = 1/291 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D D+ ++ LT+L L++ K+TD G+ LK L L +L LE +T + L++
Sbjct: 117 IGDDDLALVAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEVLASF 176
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L L L R + D SK+ L+ L+L F +TDE + L GL+ L L L +
Sbjct: 177 PNLEVLYLRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQATR 236
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ D L + L NL+ +N+ +D L +LA +L+ L LD ++T GL L L
Sbjct: 237 VTDASLPLIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGL 296
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
T L L + RI + G A ++N +R L + TD G++ + L +L L+L++
Sbjct: 297 TNLEELHVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGI 356
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
D ++ ++GLT L L++ + + AG+ ++ LK L++L LE ++T
Sbjct: 357 -FGDDGVKNLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQTRIT 406
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 156/321 (48%), Gaps = 27/321 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I+D G+ L+ L+NL L N +T G + A NL L L R + L +L
Sbjct: 140 KITDKGVLLLKPLTNLVVLGLE-NTQLTDTGAEVLASFPNLEVLYLRRTNILDPALAHLS 198
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L KL +L++++ N +TD MK L+GL+ L+ L++ ++VTD+ + + L L LN+
Sbjct: 199 KLAKLRALDLRFTN-VTDEGMKSLAGLSQLRDLRLQATRVTDASLPLIAKLPNLQKLNVW 257
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
G +D G + + +L++L L +T E L+ L
Sbjct: 258 GE------------------------NFTDAGLSQLADTKTLRILELDDTRLTSEGLIKL 293
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
GLTNLE L++ I ++GL + + + + L T +D L ++GL +L L+L
Sbjct: 294 GGLTNLEELHVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLT 353
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
D G+ L LT L L L+ +D+G +R+ K L++L + +TDA K I
Sbjct: 354 EGIFGDDGVKNLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQTRITDAAAKTI 413
Query: 393 KDLSSLTLLNLSQNCNLTDKT 413
LT LNLSQ +TD T
Sbjct: 414 AGFGELTELNLSQ-TEVTDAT 433
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 151/307 (49%), Gaps = 3/307 (0%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L + L G +TD G++ LK +NL L Q++D G E L NL L RR
Sbjct: 129 THLTELRLEGPKITDKGVLLLKPLTNLVVLGLENT-QLTDTGAEVLASFPNLEVLYLRRT 187
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I + + L L LDL G+ +L GL +L L ++ +TD+ + +
Sbjct: 188 N-ILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQ-ATRVTDASLPLI 245
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L NL+ L + TD+G++ L + L +L L+ +T+ L L L +L L++
Sbjct: 246 AKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGLTNLEELHVR 305
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R ++ +DG + ++ L L TD L + GL NL L+L GD+G+ NL
Sbjct: 306 RTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGIFGDDGVKNL 365
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
GLT+LE ++L T SD + + L LK+LNL+ +ITD + LT L+L
Sbjct: 366 AGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQTRITDAAAKTIAGFGELTELNLS 425
Query: 357 GARITDS 363
+TD+
Sbjct: 426 QTEVTDA 432
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 149/310 (48%), Gaps = 2/310 (0%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
A L +L +L LE G++ LK L L L ++ +TD+ + L+ NL+ L
Sbjct: 125 VAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQ-LTDTGAEVLASFPNLEVLY 183
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+ + + D +A+L L KL L+L VT + SL+ L L L L +++D
Sbjct: 184 LRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQATRVTDASLP 243
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN 306
+K+ +L+ LN+ TD L L L L LD + EGL+ L GLTNLE ++
Sbjct: 244 LIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGLTNLEELH 303
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
+ T I + L + + ++ L L TD GL A++ L L LDL D G
Sbjct: 304 VRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGIFGDDGVK 363
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L +L L + +DAG++ I+DL L LNL Q +TD + I+G L L
Sbjct: 364 NLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQ-TRITDAAAKTIAGFGELTEL 422
Query: 427 NVSNSRITSA 436
N+S + +T A
Sbjct: 423 NLSQTEVTDA 432
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 123/263 (46%), Gaps = 27/263 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L ++DL ++VTD G+ L S L+ L +++D L + L NL L+
Sbjct: 198 SKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQ-ATRVTDASLPLIAKLPNLQKLNV 256
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N T G+ A L L+L+ TR+ +GL+K
Sbjct: 257 WGEN-FTDAGLSQLADTKTLRILELDD-TRLTS-----EGLIK----------------- 292
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L GLTNL+ L + +++ + G+A +K + K+ L L T L+++S L +L L
Sbjct: 293 --LGGLTNLEELHVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVEL 350
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L DDG + + + SL+ L+L +D + ++ L L++LNL+ I D
Sbjct: 351 DLTEGIFGDDGVKNLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQTRITDAAA 410
Query: 294 VNLTGLTNLESINLSFTGISDGS 316
+ G L +NLS T ++D +
Sbjct: 411 KTIAGFGELTELNLSQTEVTDAT 433
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 9/227 (3%)
Query: 20 LTEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLI 75
T V+ E + A L+DL L Q V D + +IA + +L +++ G + TD+GL
Sbjct: 210 FTNVTDEGMKSLAGLSQLRDLRL-QATRVTDASLPLIA-KLPNLQKLNVWGENFTDAGLS 267
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L D L+ L+ + +++ GL L GL+NL L RR I G+ + + +
Sbjct: 268 QLADTKTLRILELDDT-RLTSEGLIKLGGLTNLEELHVRRTR-IKNDGLAVVKNMPKMRR 325
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L L GL + GL L L++ D +K L+GLT+L+ L + + +D+
Sbjct: 326 LLLRDTLCTDPGLEAVSGLKNLVELDLTE-GIFGDDGVKNLAGLTSLEDLSLWATTTSDA 384
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
GI ++ L+KL LNLE +T A +++ G L LNL++ +++D
Sbjct: 385 GIESIRDLKKLKALNLEQTRITDAAAKTIAGFGELTELNLSQTEVTD 431
>gi|46447626|ref|YP_008991.1| hypothetical protein pc1992 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401267|emb|CAF24716.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 537
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 163/288 (56%), Gaps = 11/288 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT--SLSFRRNNAITAQGMKA 126
+TD+ L+ LKDC NL+ L+ C ++D GL HL L+ L LSF RN +T G+
Sbjct: 252 LTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRN--LTDAGLAN 309
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
LI L LDL C + GL +L L L L++ C +TD+ + L+ L +L+ L
Sbjct: 310 LTPLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHL 369
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSD 242
+ C K++D+G+A+L+ L L L+L C +T A L L+ L +L +L+LNRC+ L++
Sbjct: 370 NLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTE 429
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLT 300
G + +L+ L+L + ++T++ L K LT L+ LNL+ C + D GL +L+ L
Sbjct: 430 AGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLG 489
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSL 347
L+ ++L T I+D L L L +L+ L L +TD GLA L+ L
Sbjct: 490 ALQHLDLWCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAHLSPL 537
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 163/281 (58%), Gaps = 8/281 (2%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKL 206
L+ LK L+ LN+K C +TD+ + L+ LT L+ L +S C +TD+G+A L L L
Sbjct: 257 LLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIAL 316
Query: 207 TLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NE 263
L+L C +T A L L+ LG+L YL+L+ C +L+D G + + L+ LNL + +
Sbjct: 317 QHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQK 376
Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLA 321
++D L HL+ L L+ L+L C + D GL +L LT L+ ++L+ +++ L L
Sbjct: 377 LSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLR 436
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI 379
L +L+ L+L +++T+ GL SLT L +L+L ++TD+G A+L L+ L++
Sbjct: 437 PLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDL 496
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
+TDAG+ H+K L +L L LS+ NLTD L +S L
Sbjct: 497 WCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAHLSPL 537
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 160/307 (52%), Gaps = 30/307 (9%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK L + SC +TD+G+A+L L L L+L C
Sbjct: 240 EIEELNFSDNVYLTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFC 299
Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
+T A L +L+ L +L +L+L+ C+ L+D G + +G+L L+L ++TD L H
Sbjct: 300 RNLTDAGLANLTPLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAH 359
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L L +L+ LNL C + D GL +L L L+ ++LS+
Sbjct: 360 LTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQHLDLSY--------------------- 398
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAG 388
+ +TD GLA L LT L HL L + +T++G +LR L+ L++ LT+ G
Sbjct: 399 --CQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTNDG 456
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
+ K L++L LNL+ LTD L +S L L L++ + IT AGL HLKPL L+
Sbjct: 457 LGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKPLGALQ 516
Query: 449 SLTLESC 455
L L C
Sbjct: 517 YLGLSRC 523
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 143/265 (53%), Gaps = 6/265 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S ++TD+GL HL + L+ LD +FC ++D GL +L L L L +T G+
Sbjct: 273 SCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGL 332
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L LDL C ++ GL +L L+ L+ LN+++C ++D+ + L L L+
Sbjct: 333 AHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQ 392
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-L 240
L +S C +TD+G+A+L L L L+L C +T A L L L +L +L+L+ CQ L
Sbjct: 393 HLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKL 452
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
++DG F + +L+ LNL ++TD L HL L L+ L+L I D GL +L L
Sbjct: 453 TNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKPL 512
Query: 300 TNLESINLSF-TGISDGSLRKLAGL 323
L+ + LS T ++D L L+ L
Sbjct: 513 GALQYLGLSRCTNLTDAGLAHLSPL 537
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 130/225 (57%), Gaps = 9/225 (4%)
Query: 246 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTN 301
EK K S ++ L F++ +TD L+ LK NL+ LNL SC + D GL +LT LT
Sbjct: 231 EKILKHFSNEIEELNFSDNVYLTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTA 290
Query: 302 LESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGA 358
L ++LSF ++D L L L +L+ L+L + +TD GLA LT L L +LDL
Sbjct: 291 LRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICG 350
Query: 359 RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
++TD+G A+L +L+ L + L+DAG+ H++ L +L L+LS NLTD L +
Sbjct: 351 KLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHL 410
Query: 418 SGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+ LT L L+++ + +T AGL HL+PL L+ L L C+ ND
Sbjct: 411 ARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTND 455
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 149/284 (52%), Gaps = 32/284 (11%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFS 249
+TD+ + LK + L +LNL+ C +T A L L+ L +L L+L+ C+ L+D G +
Sbjct: 252 LTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLT 311
Query: 250 KIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINL 307
+ +L+ L+L + +TD L HL L L L+L CG + D GL +LT L +L+ +NL
Sbjct: 312 PLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNL 371
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 366
+ ++++D GLA L SL L HLDL + +TD+G A
Sbjct: 372 RY-----------------------CQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLA 408
Query: 367 YLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
+L L+ L + C LT+AG+ H++ L +L L+LS LT+ L L LT L
Sbjct: 409 HLARLTALQHLSLNRCKN-LTEAGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQ 467
Query: 425 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
LN+++ ++T AGL HL PL L+ L L +T + L+
Sbjct: 468 YLNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKP 511
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 126/244 (51%), Gaps = 6/244 (2%)
Query: 13 ELVYSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVT 70
+L + R LT+ L ALQ L L + D + + G+ L +DLS +T
Sbjct: 295 DLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGLAHLTPLGA-LHYLDLSICGKLT 353
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL +LQ L+ +C ++SD GL HLR L L L +T G+ A L
Sbjct: 354 DAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARL 413
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L L L RC + GLV+L+ L+ L+ L++ +C +T+ + LT L+ L ++
Sbjct: 414 TALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNH 473
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
C K+TD+G+A+L L L L+L +T A L L LG+L YL L+RC L+D G
Sbjct: 474 CQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAH 533
Query: 248 FSKI 251
S +
Sbjct: 534 LSPL 537
>gi|406830023|ref|ZP_11089617.1| hypothetical protein SpalD1_00247 [Schlesneria paludicola DSM
18645]
Length = 374
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 109/315 (34%), Positives = 170/315 (53%), Gaps = 2/315 (0%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+N++ D + L T + SL ++ +K+TDSG+ ++ LT+L L +T
Sbjct: 55 VNLQQSERFGDGYVHALKPFTKMTSLNLNSTKITDSGLKGIRNFTSLTMLTLAFTKITDV 114
Query: 220 CLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L L L +L L+L C ++D G + ++ SL L+L + + TD L L L L
Sbjct: 115 GLVELKDLKNLTRLDLGGCTAITDVGLNEIKELTSLASLHLSYTQFTDVGLKELADLKCL 174
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
+L L I D+GL L LT+L + L T ISD LR+L GL +L+ L+L +ITD
Sbjct: 175 SNLELRGTQITDDGLKELGTLTSLTRLTLMQTKISDLGLRELKGLRNLQILDLGLTEITD 234
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
GL + L + L LFG ITD G + NL L++ +T+ G+K I L +L
Sbjct: 235 EGLKEIIDLKQIHSLYLFGDEITDEGMQSIGELNNLTELDLIQTEITNEGLKEISGLKNL 294
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L+L + +TD L+ I +T L ++N+ + IT+AGL+ L+ LKNL+SL + +VT
Sbjct: 295 KKLHLLNDGKITDVGLKEIGTMTQLTNINLGRTGITNAGLKELRNLKNLQSLDVSETEVT 354
Query: 459 ANDIKRLQSRDLPNL 473
+ + LQ ++LP L
Sbjct: 355 SEGVVALQ-KELPKL 368
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 180/336 (53%), Gaps = 28/336 (8%)
Query: 56 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
G ++ V+L S+ G +H LK + + SL+ N +I+D GL+ +R ++LT L+
Sbjct: 49 GRPVIYVNLQQSERFGDGYVHALKPFTKMTSLNLN-STKITDSGLKGIRNFTSLTMLTL- 106
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
AF + ++ GLV LK L L L++ C ITD +
Sbjct: 107 -----------AFTKITDV-------------GLVELKDLKNLTRLDLGGCTAITDVGLN 142
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ LT+L SL +S ++ TD G+ L L+ L+ L L G +T L L L SL L
Sbjct: 143 EIKELTSLASLHLSYTQFTDVGLKELADLKCLSNLELRGTQITDDGLKELGTLTSLTRLT 202
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L + ++SD G + + +L++L+LG EITDE L + L + SL L I DEG+
Sbjct: 203 LMQTKISDLGLRELKGLRNLQILDLGLTEITDEGLKEIIDLKQIHSLYLFGDEITDEGMQ 262
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHL 353
++ L NL ++L T I++ L++++GL +LK L+L +ITD GL + ++T LT++
Sbjct: 263 SIGELNNLTELDLIQTEITNEGLKEISGLKNLKKLHLLNDGKITDVGLKEIGTMTQLTNI 322
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+L IT++G LRN KNL+SL++ +T GV
Sbjct: 323 NLGRTGITNAGLKELRNLKNLQSLDVSETEVTSEGV 358
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 158/289 (54%), Gaps = 3/289 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ + S++L+ + +TDSGL +++ ++L L F +I+D GL L+ L NLT L
Sbjct: 75 TKMTSLNLNSTKITDSGLKGIRNFTSLTMLTLAFT-KITDVGLVELKDLKNLTRLDLGGC 133
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
AIT G+ L +L L L GL L L L +L ++ ITD +K L
Sbjct: 134 TAITDVGLNEIKELTSLASLHLSYTQFTDVGLKELADLKCLSNLELRGTQ-ITDDGLKEL 192
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
LT+L L + +K++D G+ LKGL+ L +L+L +T L + L + L L
Sbjct: 193 GTLTSLTRLTLMQTKISDLGLRELKGLRNLQILDLGLTEITDEGLKEIIDLKQIHSLYLF 252
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVN 295
+++D+G + ++ +L L+L EIT+E L + GL NL+ L+L + G I D GL
Sbjct: 253 GDEITDEGMQSIGELNNLTELDLIQTEITNEGLKEISGLKNLKKLHLLNDGKITDVGLKE 312
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ +T L +INL TGI++ L++L L +L+SL++ ++T G+ AL
Sbjct: 313 IGTMTQLTNINLGRTGITNAGLKELRNLKNLQSLDVSETEVTSEGVVAL 361
>gi|290979790|ref|XP_002672616.1| predicted protein [Naegleria gruberi]
gi|284086194|gb|EFC39872.1| predicted protein [Naegleria gruberi]
Length = 559
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 107/394 (27%), Positives = 196/394 (49%), Gaps = 10/394 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSG---LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
S+ L S+++SG+ + D G + +K + L D C++ G + + + LTS
Sbjct: 168 SEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVE----GAKSISEMKQLTS 223
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LS +N I G K + + L L++ G + + +L SL+I N I
Sbjct: 224 LSIS-DNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDIS-NNLIDI 281
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K +S + L SL+I +++ D G+ ++ +++LT L++ G + S+S + L
Sbjct: 282 EGAKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMKQL 341
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
+L + ++ D+G S++ L LN+ +N+I DE + + + L SL++ IG
Sbjct: 342 TFLQIFSNRIGDEGANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDIGGNQIGV 401
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
G +++ + L + + I D ++ ++ + L SLN+ +I D G +++ + L
Sbjct: 402 GGAKSISEMKQLTFLQIFSNRIGDEGVKFISEMKQLTSLNISGNRIGDEGAKSISEMKQL 461
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T L + I D G ++ K L L+I + D GVK I ++ LT LN+S N +
Sbjct: 462 TLLYISSNEIGDEGVKFISEMKQLTLLQIYSNRIGDEGVKSISEMKQLTSLNISGN-RIG 520
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
D+ ++ IS + L SLN+SN+RI G++ L L
Sbjct: 521 DEGVKSISEMKQLTSLNISNNRIGDEGVKLLTSL 554
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 152/322 (47%), Gaps = 23/322 (7%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
CN I +S + L SL IS +++ D G + +++LTLLN+ + S+
Sbjct: 156 CNEIGVEGATSISEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVEGAKSI 215
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L L+++ ++ G + S++ L +LN+ NEI DE + + L SL++
Sbjct: 216 SEMKQLTSLSISDNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDIS 275
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ I EG +++ + L S+ + + I D ++ ++ + L SL++ QI G ++
Sbjct: 276 NNLIDIEGAKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSI 335
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
+ + LT L +F RI D GA + K L SL I + D GVK I ++ LT L++
Sbjct: 336 SEMKQLTFLQIFSNRIGDEGANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDIG 395
Query: 405 QNC-----------------------NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
N + D+ ++ IS + L SLN+S +RI G + +
Sbjct: 396 GNQIGVGGAKSISEMKQLTFLQIFSNRIGDEGVKFISEMKQLTSLNISGNRIGDEGAKSI 455
Query: 442 KPLKNLRSLTLESCKVTANDIK 463
+K L L + S ++ +K
Sbjct: 456 SEMKQLTLLYISSNEIGDEGVK 477
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 147/292 (50%), Gaps = 2/292 (0%)
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
N+K+ D + K +S + L SL I+ +++ D G+ ++ +++LTLL++ +
Sbjct: 105 NVKFSVYSLD-NAKFISEMKQLTSLGIAENRIGDEGVKFISEMKQLTLLDICCNEIGVEG 163
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
S+S + L LN++ ++ D+G + S++ L +LN+ N I E + + L S
Sbjct: 164 ATSISEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVEGAKSISEMKQLTS 223
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L++ IG G ++ + L +N+S I D + ++ + L SL++ I G
Sbjct: 224 LSISDNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDISNNLIDIEG 283
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+++ + LT L+++ I D G ++ + L SL+I G + G K I ++ LT
Sbjct: 284 AKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMKQLTF 343
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L + N + D+ IS + L SLN+ ++I G++ + ++ L SL +
Sbjct: 344 LQIFSN-RIGDEGANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDI 394
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 121/246 (49%), Gaps = 4/246 (1%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L L + ++ D+G + S++ L +L++ NEI E + + L SLN+
Sbjct: 119 ISEMKQLTSLGIAENRIGDEGVKFISEMKQLTLLDICCNEIGVEGATSISEMKQLTSLNI 178
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
IGDEG ++ + L +N++ I + ++ + L SL++ +I G
Sbjct: 179 SGNRIGDEGAKLISEMKQLTLLNIADNRICVEGAKSISEMKQLTSLSISDNEIGVVGAKL 238
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT L++ I D GA ++ K L SL+I + G K I ++ LT L +
Sbjct: 239 ISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDISNNLIDIEGAKSISEMKQLTSLEI 298
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV---TAN 460
N + D+ ++ IS + L SL++S ++I G + + +K L L + S ++ AN
Sbjct: 299 YYN-EIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMKQLTFLQIFSNRIGDEGAN 357
Query: 461 DIKRLQ 466
I ++
Sbjct: 358 SISEMK 363
>gi|168698162|ref|ZP_02730439.1| hypothetical protein GobsU_01482 [Gemmata obscuriglobus UQM 2246]
Length = 295
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 148/280 (52%), Gaps = 2/280 (0%)
Query: 164 WCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
W + +TD+ +K L+GLTNL L + + VTD G+ L L+ L L+L VT A L
Sbjct: 7 WRDLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLK 66
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L+ L L L L ++D G ++ SLK L L ++TD L L NL L
Sbjct: 67 ALAPLTGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLG 126
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L G+ D GL L NL ++ LS TG++D L++LA L +L L L + D GL
Sbjct: 127 LGGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLK 186
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
L L LDL+ ++TD+G L KNL L++ +TD G++ + L +LT L
Sbjct: 187 ELAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLI 246
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L +TD L+ ++GLT L LN+ +++T AG + LK
Sbjct: 247 LI-GTGVTDAGLKELAGLTNLTRLNLYRTKVTDAGWKELK 285
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 147/277 (53%), Gaps = 1/277 (0%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+VTD+G+ L GL LT L L G VT L+ L+ L +L L+L + +++D G + +
Sbjct: 11 QVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKALAP 70
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ L L LG +TD L L +L++L L S + D GL L NL + L T
Sbjct: 71 LTGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGLGGT 130
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
G++D LR+L +L +L L +TD GL L L LT L L G + D G L
Sbjct: 131 GVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKELAP 190
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
FKNL L++ +TDAG+K + L +LTLL+L + +TD L ++GL L +L +
Sbjct: 191 FKNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGR-TQVTDDGLRELTGLKALTTLILIG 249
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ +T AGL+ L L NL L L KVT K L+S
Sbjct: 250 TGVTDAGLKELAGLTNLTRLNLYRTKVTDAGWKELKS 286
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/279 (35%), Positives = 148/279 (53%), Gaps = 2/279 (0%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+Q++D GL+ L GL+NLT L A+T G++ A L NL LDL + GL L
Sbjct: 10 LQVTDAGLKELAGLTNLTQLILL-GTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKAL 68
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L L L + +TD+ +K L +LK+L + +KVTD+G+ L + LT+L L
Sbjct: 69 APLTGLTRLALG-DTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGL 127
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
G VT A L L +L L L+ ++D G ++ + + +L L LG + D L
Sbjct: 128 GGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKE 187
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L NL L+L S + D GL L L NL ++L T ++D LR+L GL +L +L L
Sbjct: 188 LAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLIL 247
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+TD GL L LT LT L+L+ ++TD+G L++
Sbjct: 248 IGTGVTDAGLKELAGLTNLTRLNLYRTKVTDAGWKELKS 286
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 145/292 (49%), Gaps = 25/292 (8%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
R+ +T G+K AGL NL +L I +TD ++
Sbjct: 8 RDLQVTDAGLKELAGLTNLTQL-------------------------ILLGTAVTDVGLE 42
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ L NL +L + +KVTD+G+ L L LT L L VT A L L SL L
Sbjct: 43 ELAPLKNLNTLDLGKTKVTDAGLKALAPLTGLTRLALGDTGVTDAGLKELVPFKSLKTLY 102
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L +++D G ++ + +L VL LG +TD L L NL +L L G+ D GL
Sbjct: 103 LFSTKVTDAGLKELGRFKNLTVLGLGGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLK 162
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L L NL + L TG++D L++LA +L L+L + ++TD GL L L LT LD
Sbjct: 163 ELAPLKNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLD 222
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L ++TD G L K L +L + G G+TDAG+K + L++LT LNL +
Sbjct: 223 LGRTQVTDDGLRELTGLKALTTLILIGTGVTDAGLKELAGLTNLTRLNLYRT 274
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 153/321 (47%), Gaps = 39/321 (12%)
Query: 26 EAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQS 85
+ +RD + D L + G+ ++L + L G+ VTD GL L NL +
Sbjct: 5 KPWRDLQVTDAGLKELAGL------------TNLTQLILLGTAVTDVGLEELAPLKNLNT 52
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD +++D GL+ L L+ LT L+ + +T G+K
Sbjct: 53 LDLGKT-KVTDAGLKALAPLTGLTRLAL-GDTGVTDAGLKE------------------- 91
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
LV K L L + K +TD+ +K L NL L + + VTD+G+ L +
Sbjct: 92 --LVPFKSLKTLYLFSTK----VTDAGLKELGRFKNLTVLGLGGTGVTDAGLRELGRFKN 145
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT L L G VT A L L+ L +L L L ++D G ++ + +L L+L ++T
Sbjct: 146 LTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVT 205
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
D L L L NL L+L + D+GL LTGL L ++ L TG++D L++LAGL++
Sbjct: 206 DAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLILIGTGVTDAGLKELAGLTN 265
Query: 326 LKSLNLDARQITDTGLAALTS 346
L LNL ++TD G L S
Sbjct: 266 LTRLNLYRTKVTDAGWKELKS 286
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
++ +TD L+ ++GLT L L + + +T GL L PLKNL +L L KVT +K
Sbjct: 8 RDLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKA 67
Query: 465 L 465
L
Sbjct: 68 L 68
>gi|290973212|ref|XP_002669343.1| predicted protein [Naegleria gruberi]
gi|284082889|gb|EFC36599.1| predicted protein [Naegleria gruberi]
Length = 440
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 168/328 (51%), Gaps = 7/328 (2%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+ + +L SLNI + N I D ++K +S + L SL I ++V D G YL +++LT LN
Sbjct: 115 ISAMKQLTSLNI-YDNGIGDEEIKYISEMKQLTSLNIGYNRVGDEGAKYLSEMKQLTSLN 173
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ V LS + L LN+ ++ +G + S++ L LN+ NE+++E
Sbjct: 174 IGYNRVGIEGAKYLSEMEQLTSLNIGYSRIGIEGVKYISEMKQLTSLNISKNEVSNEGAK 233
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+L + L LN+ IGDEG+ L+ + L S+++ + I ++ ++ + L SL+
Sbjct: 234 YLSEMKQLRLLNIYHNEIGDEGVKYLSEMKQLTSLHIGYNRIGLEGVKLISEMEQLTSLD 293
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ +I+D G L+ + LT L++ +RI G Y+ K L SL I + G K
Sbjct: 294 ISENEISDEGAKYLSEMEQLTSLNIDYSRIGLEGVKYISEMKQLTSLTIAYNRIGIKGAK 353
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
I ++ L LL++S N ++D+ + +S + L+SL +S I G++++ +K LR L
Sbjct: 354 LISEMKQLRLLDISNN-EISDEGAKYLSEMKQLISLYISEIGIGIKGVKYISEMKQLRLL 412
Query: 451 TLESCKVTANDIKRLQSRDLPNLVSFRP 478
+T N I + ++ L + P
Sbjct: 413 D-----ITRNRIGKEGAKLLSEMKQLTP 435
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 161/300 (53%), Gaps = 2/300 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI + N + D K LS + L SL I ++V G YL +++LT LN+
Sbjct: 142 MKQLTSLNIGY-NRVGDEGAKYLSEMKQLTSLNIGYNRVGIEGAKYLSEMEQLTSLNIGY 200
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + +S + L LN+++ ++S++G + S++ L++LN+ NEI DE + +L
Sbjct: 201 SRIGIEGVKYISEMKQLTSLNISKNEVSNEGAKYLSEMKQLRLLNIYHNEIGDEGVKYLS 260
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L SL++ IG EG+ ++ + L S+++S ISD + L+ + L SLN+D
Sbjct: 261 EMKQLTSLHIGYNRIGLEGVKLISEMEQLTSLDISENEISDEGAKYLSEMEQLTSLNIDY 320
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+I G+ ++ + LT L + RI GA + K LR L+I ++D G K++
Sbjct: 321 SRIGLEGVKYISEMKQLTSLTIAYNRIGIKGAKLISEMKQLRLLDISNNEISDEGAKYLS 380
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
++ L L +S+ + K ++ IS + L L+++ +RI G + L +K L L LE
Sbjct: 381 EMKQLISLYISE-IGIGIKGVKYISEMKQLRLLDITRNRIGKEGAKLLSEMKQLTPLCLE 439
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 6/228 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++S ++V++ G +L + L+ L+ + +I D G+++L + LTSL
Sbjct: 212 SEMKQLTSLNISKNEVSNEGAKYLSEMKQLRLLNI-YHNEIGDEGVKYLSEMKQLTSLHI 270
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G+K + + L LD+ G L + +L SLNI + I +
Sbjct: 271 GYNR-IGLEGVKLISEMEQLTSLDISENEISDEGAKYLSEMEQLTSLNIDYSR-IGLEGV 328
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I+ +++ G + +++L LL++ ++ LS + L L
Sbjct: 329 KYISEMKQLTSLTIAYNRIGIKGAKLISEMKQLRLLDISNNEISDEGAKYLSEMKQLISL 388
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTNL 278
++ + G + S++ L++L++ N I E L +K LT L
Sbjct: 389 YISEIGIGIKGVKYISEMKQLRLLDITRNRIGKEGAKLLSEMKQLTPL 436
>gi|217074836|gb|ACJ85778.1| unknown [Medicago truncatula]
Length = 81
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 72/79 (91%)
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLRSLTLESCKVTAN
Sbjct: 3 LNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTAN 62
Query: 461 DIKRLQSRDLPNLVSFRPE 479
DIK+ + LPNLVSFRPE
Sbjct: 63 DIKKFKLIHLPNLVSFRPE 81
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
LN+ + +TD ++ ++GLT L SL +S +++T +G+ +LK L+ L L LE C VTA
Sbjct: 3 LNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTA 61
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+TD + + LT L L+L RIT +G +L+ KNLRSL + +T +K K
Sbjct: 11 LTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTANDIKKFK 68
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 36 LCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQI 94
L L Q + DK +++IA ++L+S++LS + +T +GL HLK NL+SL C +
Sbjct: 3 LNLSQNSNLTDKTVELIAGL-TALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTA 61
Query: 95 SDGGLEHLRGLSNLTSLSFR 114
+D L L NL +SFR
Sbjct: 62 NDIKKFKLIHLPNL--VSFR 79
>gi|297803756|ref|XP_002869762.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp.
lyrata]
gi|297315598|gb|EFH46021.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp.
lyrata]
Length = 590
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 129/450 (28%), Positives = 203/450 (45%), Gaps = 90/450 (20%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMK 156
G +H ++ ++ R ++I A+ M G +NLV L+L C RI+ L + GL
Sbjct: 58 GFKH-----SVENIDLRGESSINAEWMAYIGGFVNLVSLNLSDCQRINSSTLWPITGLTS 112
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L L++ C +TD+ +K L + NLK L IS + VT GI+ L LQKL+LL+L G PV
Sbjct: 113 LTELDLSRCFKVTDAGIKHLQSVVNLKKLWISQTGVTKVGISLLASLQKLSLLDLGGLPV 172
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T L +L L L YL++ +++ G + +L LNL + +T +
Sbjct: 173 TDHNLIALQELTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQT-----PNIP 227
Query: 277 NLESLNLDSCGIGDE---------------------------GLVNLTGLT--------- 300
+LE L+++ C I E N + +T
Sbjct: 228 HLECLHMNMCTIVSEPKTHCSLASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTSL 287
Query: 301 ----------NLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAAL----- 344
NLE ++LS T D S+ +A + +LK+LN+ +IT G+ L
Sbjct: 288 QNFSFIETMINLEHLDLSSTAFGDDSVGFVACVGENLKNLNVSDTKITSAGVGNLAGHVP 347
Query: 345 ---------------------TSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEI 379
T + + LDL I + A A L++ +L++L +
Sbjct: 348 QLETFSLSQTFVDDLSILLISTMMPCVKALDLGMTSIREEQAEPSLAALQSLTSLKTLSL 407
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
L D + + L+ LT L+L ++ +LTD TL +S L LVSL V ++ +TS GL
Sbjct: 408 EHPYLGDTALSALSSLTGLTHLSL-RSTSLTDSTLHHLSSLPNLVSLGVRDAVLTSNGLE 466
Query: 440 HLKPLKNLRSLTLESCK-VTANDIKRLQSR 468
+P K LR+L L+ C +T +DI L R
Sbjct: 467 KFRPPKRLRTLDLKGCWLLTKDDIAGLCKR 496
>gi|168701995|ref|ZP_02734272.1| hypothetical protein GobsU_20883 [Gemmata obscuriglobus UQM 2246]
Length = 684
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 125/453 (27%), Positives = 199/453 (43%), Gaps = 57/453 (12%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L + L G+ VTD+GL HLK SNL L+ + ++D GL L LTSL + +
Sbjct: 64 ALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYS-GVTDAGLADLNAFPLLTSL-WVQGT 121
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ G+ L L +DL GL +LK + +TD+++ L
Sbjct: 122 TVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLK--GLKGLTLLLSGTALTDANLCYLK 179
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS----------AL 227
GLT + L +S + +TD+G+++L L+ L L++ T A L L +
Sbjct: 180 GLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRATPASLAELHKSVPGCRIRDSA 239
Query: 228 GSLFYLNLNRC------------------------------------------QLSDDGC 245
G L++NR + DD
Sbjct: 240 GDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLPQGPLALARVNLSDRSVKDDDL 299
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
+ + L L L +TD L +LK L L+ L+L + D GL + +L ++
Sbjct: 300 GRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSLTGTDVTDAGLARIRERKSLTTL 359
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
+LS T +++ L LAGL+ L ++LD ++D GL L LT L L L R+ G
Sbjct: 360 HLSSTKVTNAGLVHLAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKTLGLSRTRVLGPGL 419
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
A+ ++K L +L + G+TD H+ +L L + LTD + + LTGL+S
Sbjct: 420 AHTHSWKRLDALYLTNTGVTDEAFAHLSPHHTLRHLG-ADGTGLTDAGMAHVRHLTGLIS 478
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
LN+S++ + AGL L LT+ + KVT
Sbjct: 479 LNLSDTAVGDAGLMQLGSNAGPTHLTVRNTKVT 511
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 134/498 (26%), Positives = 199/498 (39%), Gaps = 112/498 (22%)
Query: 30 DCALQDLCLGQYPGVNDKWMD---------VIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80
D L DL +P + W+ +A + +L +DLSG+ VT GL HLK
Sbjct: 101 DAGLADL--NAFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLKGL 158
Query: 81 -------SNLQSLDFNFCI---------------QISDGGLEHLRGLSNLTSLSFRRNNA 118
S D N C ++D GL HL L L +L R+ A
Sbjct: 159 KGLTLLLSGTALTDANLCYLKGLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRA 218
Query: 119 ITA---------QGMKAFAGLINLVKLDLERCTR------------------IHGGLVNL 151
A G + + LD+ R I
Sbjct: 219 TPASLAELHKSVPGCRIRDSAGDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLP 278
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+G + L +N+ + D D+ L+G T L L + ++VTD+ + YLK L +L L+L
Sbjct: 279 QGPLALARVNLS-DRSVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSL 337
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
G VT D G + + SL L+L ++T+ LVH
Sbjct: 338 TGTDVT------------------------DAGLARIRERKSLTTLHLSSTKVTNAGLVH 373
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN- 330
L GL L ++LD G+ D GLV+L GLT+L+++ LS T + GL+ S
Sbjct: 374 LAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKTLGLSRTRVLG------PGLAHTHSWKR 427
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
LDA +T+TG +TD A+L LR L G GLTDAG+
Sbjct: 428 LDALYLTNTG-------------------VTDEAFAHLSPHHTLRHLGADGTGLTDAGMA 468
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
H++ L+ L LNLS + D L + G L V N+++T GL R++
Sbjct: 469 HVRHLTGLISLNLSDTA-VGDAGLMQLGSNAGPTHLTVRNTKVTLRGLHAFHATGPWRTV 527
Query: 451 TLESCKVTANDIKRLQSR 468
T + ++ + R +R
Sbjct: 528 TWDGGQLGPTEADRSAAR 545
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 159/367 (43%), Gaps = 76/367 (20%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ D+D+ L L + + +KVTD+G+A+LKGL L LNL VT A L L+
Sbjct: 49 RAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYSGVTDAGLADLN 108
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-------------- 271
A L L + +SD G ++ +L ++L ++T L H
Sbjct: 109 AFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLKGLKGLTLLLSGT 168
Query: 272 ---------LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL-- 320
LKGLT + L+L + D GL +L L L ++++ T + SL +L
Sbjct: 169 ALTDANLCYLKGLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRATPASLAELHK 228
Query: 321 --------------------------------------------------AGLSSLKSLN 330
G +L +N
Sbjct: 229 SVPGCRIRDSAGDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLPQGPLALARVN 288
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L R + D L L TGLT L L R+TD+ YL+N L+ L + G +TDAG+
Sbjct: 289 LSDRSVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSLTGTDVTDAGLA 348
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
I++ SLT L+LS + +T+ L ++GL GL +++ + ++ AGL HLK L +L++L
Sbjct: 349 RIRERKSLTTLHLS-STKVTNAGLVHLAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKTL 407
Query: 451 TLESCKV 457
L +V
Sbjct: 408 GLSRTRV 414
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 151/334 (45%), Gaps = 32/334 (9%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+G+DVTD+GL +++ +L +L + ++++ GL HL GL+ L+ + ++ G
Sbjct: 337 LTGTDVTDAGLARIRERKSLTTLHLS-STKVTNAGLVHLAGLAGLSHIHLD-GTGVSDAG 394
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ GL +L L L R + GL + +L++L + +TD LS L+
Sbjct: 395 LVHLKGLTDLKTLGLSRTRVLGPGLAHTHSWKRLDALYLT-NTGVTDEAFAHLSPHHTLR 453
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L + +TD+G+A+++ L L LNL V A L L + +L + +++
Sbjct: 454 HLGADGTGLTDAGMAHVRHLTGLISLNLSDTAVGDAGLMQLGSNAGPTHLTVRNTKVTLR 513
Query: 244 GCEKFSKIGSLKVL-----NLGFNEITDECL---------VHLKGLTN------------ 277
G F G + + LG E + + G+ N
Sbjct: 514 GLHAFHATGPWRTVTWDGGQLGPTEADRSAARWALAAGGRLRVSGVPNEIVAAGELPKRK 573
Query: 278 --LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+ L L+ + D L L LT + ++L+ + I++ L L GL+ L+ L L +
Sbjct: 574 FVVTELALNGLAVSDTELAALKYLTGMSRLDLAGSAITNDGLAHLKGLTGLRRLGLSETR 633
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
+TD GL A+ +L LT LDL G +T GA R
Sbjct: 634 VTDAGLDAIKALP-LTELDLLGTAVTQKGAEGFR 666
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 110/403 (27%), Positives = 173/403 (42%), Gaps = 81/403 (20%)
Query: 54 SQGS-SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
QG +L V+LS V D L L C+ L L + +++D L +L+ L+ L LS
Sbjct: 278 PQGPLALARVNLSDRSVKDDDLGRLAGCTGLTELVLHET-RVTDAALGYLKNLARLQFLS 336
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+ +T G+ +L L L + GLV+L GL L +++ ++D+
Sbjct: 337 LTGTD-VTDAGLARIRERKSLTTLHLSSTKVTNAGLVHLAGLAGLSHIHLD-GTGVSDAG 394
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ L GLT+LK+L +S ++V G+A+ ++L L L VT LS +L +
Sbjct: 395 LVHLKGLTDLKTLGLSRTRVLGPGLAHTHSWKRLDALYLTNTGVTDEAFAHLSPHHTLRH 454
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L + L+D G + H++ LT L SLNL +GD G
Sbjct: 455 LGADGTGLTDAG------------------------MAHVRHLTGLISLNLSDTAVGDAG 490
Query: 293 LVNL---TGLTNLESINLSFT-----------------------------------GISD 314
L+ L G T+L N T ++
Sbjct: 491 LMQLGSNAGPTHLTVRNTKVTLRGLHAFHATGPWRTVTWDGGQLGPTEADRSAARWALAA 550
Query: 315 GSLRKLAGLSS--------------LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
G +++G+ + + L L+ ++DT LAAL LTG++ LDL G+ I
Sbjct: 551 GGRLRVSGVPNEIVAAGELPKRKFVVTELALNGLAVSDTELAALKYLTGMSRLDLAGSAI 610
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
T+ G A+L+ LR L + +TDAG+ IK L LT L+L
Sbjct: 611 TNDGLAHLKGLTGLRRLGLSETRVTDAGLDAIKAL-PLTELDL 652
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 101/214 (47%), Gaps = 26/214 (12%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
+L +L + D L LK L + L + D GL +L GL+NL +NL+++G+
Sbjct: 40 ALTAADLTDRAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYSGV 99
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
+D L L L SL + ++D GLA L LTH+DL G ++T G A+L
Sbjct: 100 TDAGLADLNAFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHL-KGL 158
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
+L + G LTDA + ++K GLTG+V L++S++
Sbjct: 159 KGLTLLLSGTALTDANLCYLK-------------------------GLTGVVELSLSDTP 193
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+T AGL HL LK L +L + + T + L
Sbjct: 194 LTDAGLSHLHDLKALGTLDVRKTRATPASLAELH 227
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 84/198 (42%), Gaps = 25/198 (12%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + ++ V D+ +A LK Q LT + L G VT A L L L +L +LNL
Sbjct: 41 LTAADLTDRAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNL------ 94
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
++ +TD L L L SL + + D GL L
Sbjct: 95 ------------------AYSGVTDAGLADLNAFPLLTSLWVQGTTVSDAGLAVARELPA 136
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L I+LS T ++ L L +L L +TD L L LTG+ L L +T
Sbjct: 137 LTHIDLSGTKVTGPGLAHLK-GLKGLTLLLSGTALTDANLCYLKGLTGVVELSLSDTPLT 195
Query: 362 DSGAAYLRNFKNLRSLEI 379
D+G ++L + K L +L++
Sbjct: 196 DAGLSHLHDLKALGTLDV 213
>gi|46445970|ref|YP_007335.1| hypothetical protein pc0336 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399611|emb|CAF23060.1| hypothetical protein pc0336 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 602
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 175/309 (56%), Gaps = 9/309 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L +TD+ L+ LK+C NL+ L C ++D GL HL L L L N +T G
Sbjct: 291 LENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAG 350
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ L+ L L+L C + GL +L L+ L+ L++ C+ +TD+ + L+ L L
Sbjct: 351 LAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAHLTPLMAL 410
Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
+ L +S C K+TD+G+A+L L L L+L GC +T L L+ L +L +LNL+ C +
Sbjct: 411 QHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDK 470
Query: 240 LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
L+D G + + +L+ LNL + ++TD L HL L L+ L+L+ C + D GL +LT
Sbjct: 471 LTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLT 530
Query: 298 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 355
L NL +NLS+ ++D L L L +L+ LNL R++TD GLA L SL L HLDL
Sbjct: 531 SLVNLRHLNLSYCRKLTDVGLAHLTPLVALQHLNLSCCRKLTDAGLAHLASLLALQHLDL 590
Query: 356 FGA-RITDS 363
G ++TD+
Sbjct: 591 SGCDKLTDA 599
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 126/348 (36%), Positives = 182/348 (52%), Gaps = 32/348 (9%)
Query: 77 LKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LK SN ++ LDF ++D L L+ NL L +R + +T G+ A L+ L
Sbjct: 278 LKHFSNEIERLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQH 337
Query: 136 LDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
LDL C + GL +L LM L+ LN+ +C +TD+ + L+ L L+ L +S C +T
Sbjct: 338 LDLSECNNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLT 397
Query: 194 DSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
D+G+A+L L L L L C +T A L L+ L +L YL+LN GC+K + +G
Sbjct: 398 DAGLAHLTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLN-------GCDKLTDVG 450
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-T 310
L HL L L LNL C + D GL +LT L L+ +NL +
Sbjct: 451 ----------------LAHLTPLVALTHLNLSWCDKLTDAGLAHLTPLVALQHLNLRWCR 494
Query: 311 GISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 368
++D L L L +L+ L+L+ ++TD GLA LTSL L HL+L + ++TD G A+L
Sbjct: 495 KLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHL 554
Query: 369 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
L+ L + C LTDAG+ H+ L +L L+LS LTD LE
Sbjct: 555 TPLVALQHLNLSCCRKLTDAGLAHLASLLALQHLDLSGCDKLTDAVLE 602
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 137/444 (30%), Positives = 216/444 (48%), Gaps = 53/444 (11%)
Query: 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
P ++Q+ F L+ CL + + + + + L Y + + V+ + G LL +
Sbjct: 165 PLTLTQKEFIHLL--NCLMDANFKVSEEDIPSFIQLADYYQLTE----VVKNLGEQLLDI 218
Query: 63 DLSGS----DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
S + ++ L+ LK+ NF Q L++ L+ ++SL + +
Sbjct: 219 YKSKKFELFNSSEDSLVELKEV-------LNFARQYQLNTLKNYLELTVVSSL-LNQTSQ 270
Query: 119 ITA--QGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T + +K F+ I +LD LE L+ LK L+ L ++ C+ +TD+ +
Sbjct: 271 LTEFEKILKHFSNEIE--RLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAH 328
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYL 233
L+ L L+ L +S C+ +TD+G+A+L L L LNL C +T A L L+ L +L YL
Sbjct: 329 LAPLLALQHLDLSECNNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYL 388
Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGD 290
+L+ C L+D G + + +L+ L L +++TD L HL L L+ L+L+ C + D
Sbjct: 389 DLSGCDNLTDAGLAHLTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTD 448
Query: 291 EGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 348
GL +LT L L +NLS+ ++D L L L +L+ LNL R++TD GLA LT L
Sbjct: 449 VGLAHLTPLVALTHLNLSWCDKLTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLV 508
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L HLDL C LTDAG+ H+ L +L LNLS
Sbjct: 509 ALQHLDL----------------------NRCPK-LTDAGLAHLTSLVNLRHLNLSYCRK 545
Query: 409 LTDKTLELISGLTGLVSLNVSNSR 432
LTD L ++ L L LN+S R
Sbjct: 546 LTDVGLAHLTPLVALQHLNLSCCR 569
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 108/201 (53%), Gaps = 6/201 (2%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS-FTGISDGSLRK 319
N +TD L HL L L+ LNL C + D GL +LT L L+ ++LS ++D L
Sbjct: 344 NNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAH 403
Query: 320 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSL 377
L L +L+ L L A ++TD GLA LT L L +L L G ++TD G A+L L L
Sbjct: 404 LTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHL 463
Query: 378 EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITS 435
+ LTDAG+ H+ L +L LNL LTD L ++ L L L+++ ++T
Sbjct: 464 NLSWCDKLTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTD 523
Query: 436 AGLRHLKPLKNLRSLTLESCK 456
AGL HL L NLR L L C+
Sbjct: 524 AGLAHLTSLVNLRHLNLSYCR 544
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 40 QYPGVN--DKWMDVIASQGSSLLSV---DLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQ 93
QY +N DK DV + + L+++ +LS D +TD+GL HL LQ L+ +C +
Sbjct: 436 QYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLTPLVALQHLNLRWCRK 495
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK 152
++D GL HL L L L R +T G+ L+NL L+L C ++ GL +L
Sbjct: 496 LTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLT 555
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L+ L+ LN+ C +TD+ + L+ L L+ L +S C K+TD+
Sbjct: 556 PLVALQHLNLSCCRKLTDAGLAHLASLLALQHLDLSGCDKLTDA 599
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 360 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+TD+ L+N KNL+ L + LTDAG+ H+ L +L L+LS+ NLTD L ++
Sbjct: 296 LTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAGLAHLT 355
Query: 419 GLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 455
L L LN+S + +T AGL HL PL L+ L L C
Sbjct: 356 PLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGC 393
>gi|46447569|ref|YP_008934.1| hypothetical protein pc1935 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401210|emb|CAF24659.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 504
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 158/297 (53%), Gaps = 27/297 (9%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++L+F+ ++D L L+ NL +L FR+ +TA G+ L+ L LDL C
Sbjct: 227 IEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCY 286
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS--CS-KVTDSGIA 198
+ GL +L L+ L+ LN+ +TD+ + LS LT L+ L +S C+ K+TD+G+A
Sbjct: 287 NLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGLA 346
Query: 199 YLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
+L+ L L LNL C T A L L L +L +LNL+ C IG+
Sbjct: 347 HLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLSGC----------GGIGA---- 392
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF-TGISDGS 316
+ L HL+ LT L+ LNL CG+ D+ L +LT L L+ ++LS ++D
Sbjct: 393 -----GLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAG 447
Query: 317 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNF 371
L L L +L+ LNL Q+T+ GLA L LT L HL+L G + +TD G A LR F
Sbjct: 448 LAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLARLRPF 504
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 151/318 (47%), Gaps = 57/318 (17%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+ +L+F +T + A NL L +C + GL L+ L+ L+ L++ +C
Sbjct: 227 IEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCY 286
Query: 167 CITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC---PVTAACLD 222
+TD+ + L+ L LK L +S +TD+G+A+L L L LNL C +T A L
Sbjct: 287 NLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGLA 346
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L L +L YLNL+RC KF+ G L HL+ LT L+ LN
Sbjct: 347 HLRPLVALKYLNLSRC-------SKFTGAG----------------LAHLRPLTALQHLN 383
Query: 283 LDSCG-----IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQI 336
L CG + GL +L LT L+ +NLS+ G++D L L L +L+ L+L + +
Sbjct: 384 LSGCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHL 443
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLA L L L HL+L C LT+AG+ H+ L+
Sbjct: 444 TDAGLAHLNPLIALQHLNL----------------------SKCDQ-LTNAGLAHLIPLT 480
Query: 397 SLTLLNLSQNCNLTDKTL 414
+L LNLS NLTD L
Sbjct: 481 ALQHLNLSGCSNLTDDGL 498
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 143/291 (49%), Gaps = 36/291 (12%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
+ +TD + LK + L L CP +TAA L L L +L +L+LN C L+D G
Sbjct: 236 AYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAH 295
Query: 248 FSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC---GIGDEGLVNLTGLTNLE 303
+ + +LK LNL G +TD L HL LT L+ LNL C + D GL +L L L+
Sbjct: 296 LAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGLAHLRPLVALK 355
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-----FGA 358
+NLS + T GLA L LT L HL+L GA
Sbjct: 356 YLNLS-----------------------RCSKFTGAGLAHLRPLTALQHLNLSGCGGIGA 392
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+ +G A+LR L+ L + G+TD + H+ L +L L+LS +LTD L ++
Sbjct: 393 GLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLN 452
Query: 419 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 467
L L LN+S ++T+AGL HL PL L+ L L C +T + + RL+
Sbjct: 453 PLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLARLRP 503
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 139/265 (52%), Gaps = 14/265 (5%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD L+ LKDC NL++L F C ++ GL +LR L L L +T G+ A
Sbjct: 238 LTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAHLA 297
Query: 129 GLINLVKLDLE-RCTRIHGGLVNLKGLMKLESLNIKWCNC---ITDSDMKPLSGLTNLKS 184
L+ L L+L GL +L L L+ LN+ C C +TD+ + L L LK
Sbjct: 298 PLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSEC-CNYKLTDAGLAHLRPLVALKY 356
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-----PVTAACLDSLSALGSLFYLNLNRC 238
L +S CSK T +G+A+L+ L L LNL GC + +A L L L +L +LNL+ C
Sbjct: 357 LNLSRCSKFTGAGLAHLRPLTALQHLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSWC 416
Query: 239 QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 296
++DD + + +L+ L+L +TD L HL L L+ LNL C + + GL +L
Sbjct: 417 GVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHL 476
Query: 297 TGLTNLESINLS-FTGISDGSLRKL 320
LT L+ +NLS + ++D L +L
Sbjct: 477 IPLTALQHLNLSGCSNLTDDGLARL 501
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 127/241 (52%), Gaps = 11/241 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T +GL +L+ LQ LD N+C ++D GL HL L L L+ + +T G+
Sbjct: 261 PNLTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAH 320
Query: 127 FAGLINLVKLDLERCTRIH---GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L L L+L C GL +L+ L+ L+ LN+ C+ T + + L LT L+
Sbjct: 321 LSPLTALQHLNLSECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQ 380
Query: 184 SLQIS-CSKV----TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L +S C + +G+A+L+ L L LNL C VT L L+ L +L YL+L+ C
Sbjct: 381 HLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNC 440
Query: 239 -QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVN 295
L+D G + + +L+ LNL +++T+ L HL LT L+ LNL C + D+GL
Sbjct: 441 WHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLAR 500
Query: 296 L 296
L
Sbjct: 501 L 501
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 32/228 (14%)
Query: 247 KFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLES 304
+FSK I +L N + +TD L+ LK NL++L C + GL L L L+
Sbjct: 222 RFSKKIEALNFSNQAY--LTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQH 279
Query: 305 INLSF-TGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITD 362
++L++ ++D L LA L +LK LNL +TD GLA L+ LT L HL+L
Sbjct: 280 LDLNYCYNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLS------ 333
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
E C LTDAG+ H++ L +L LNLS+ T L + LT
Sbjct: 334 ---------------ECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTA 378
Query: 423 LVSLNVSN-----SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
L LN+S + + SAGL HL+PL L+ L L C VT +++ L
Sbjct: 379 LQHLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHL 426
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDG----GLEHLRGLSNLTSLSFRRNNAITAQ 122
S T +GL HL+ + LQ L+ + C I G GL HLR L+ L L+ +T
Sbjct: 363 SKFTGAGLAHLRPLTALQHLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSW-CGVTDD 421
Query: 123 GMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ L L LDL C + GL +L L+ L+ LN+ C+ +T++ + L LT
Sbjct: 422 ELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTA 481
Query: 182 LKSLQIS-CSKVTDSGIAYLKGL 203
L+ L +S CS +TD G+A L+
Sbjct: 482 LQHLNLSGCSNLTDDGLARLRPF 504
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++LS VTD L HL LQ LD + C ++D GL HL L L L+ +
Sbjct: 406 TALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKC 465
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI 144
+ +T G+ L L L+L C+ +
Sbjct: 466 DQLTNAGLAHLIPLTALQHLNLSGCSNL 493
>gi|290977929|ref|XP_002671689.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284085260|gb|EFC38945.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 434
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 161/303 (53%), Gaps = 5/303 (1%)
Query: 179 LTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
NLK L+I + D G + ++ LT LN+ C +T+ + + L L YLN+
Sbjct: 117 FPNLKRLEIGDNQQFGDCGAESISKIKTLTSLNVLDCGITSKGAEFIGLLNGLTYLNIGN 176
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++ D G + K+ SL VL +G EIT E + + L SL++ S + E +++
Sbjct: 177 NKIMDSGMKFIGKLSSLNVLQIGSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAKSIS 236
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
+ L+S+N+S TGIS L+ L+ L+ L +L+L IT+ GL +++ + +T L L
Sbjct: 237 SIHGLKSLNISNTGISVEGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITKLFLQH 296
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
I GA L NLR L I +T G+KHI L ++T LN+S N L D+ L+L+
Sbjct: 297 NVIDCDGAQLLSTMTNLRLLNISQTKITTEGIKHITSLKNITSLNISIN-QLNDEALKLV 355
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT---ANDIKRLQSRDLPNLV 474
S + L +L+ N+++TS G +H+ L NL L + S V AN + ++ + + N+
Sbjct: 356 SSMNQLTNLSTHNNKLTSEGAKHISQLNNLTELNISSNPVRIEGANYLNQMTTLKIINVS 415
Query: 475 SFR 477
+ R
Sbjct: 416 NCR 418
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 116/425 (27%), Positives = 192/425 (45%), Gaps = 49/425 (11%)
Query: 1 MLPRDISQQIFNELVYSRCLTE---VSLEAF-----RDCALQDLCLGQYPGVNDKWMDVI 52
+ P DI ++I L + L +S + F R A L GQ W+ I
Sbjct: 24 LFPDDICEEIMQWLAWKEVLLNCCLISKQWFTIAKSRYRASIQLTYGQ----EKLWLCFI 79
Query: 53 ASQGSSL-----LSVD---LSGSDVTDS--GLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
Q + + VD + GS DS I K NL+ L+ Q D G E +
Sbjct: 80 KEQQEGISRIFNIGVDSFRVVGSYFIDSINAEIISKSFPNLKRLEIGDNQQFGDCGAESI 139
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ LTSL+ + IT++G + F GL+N GL L N
Sbjct: 140 SKIKTLTSLNVL-DCGITSKGAE-FIGLLN--------------------GLTYLNIGN- 176
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I DS MK + L++L LQI +++T + ++ LT L++ PVT
Sbjct: 177 ---NKIMDSGMKFIGKLSSLNVLQIGSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAK 233
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
S+S++ L LN++ +S +G + S + L L+L N IT+E L+ + + + L
Sbjct: 234 SISSIHGLKSLNISNTGISVEGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITKLF 293
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L I +G L+ +TNL +N+S T I+ ++ + L ++ SLN+ Q+ D L
Sbjct: 294 LQHNVIDCDGAQLLSTMTNLRLLNISQTKITTEGIKHITSLKNITSLNISINQLNDEALK 353
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
++S+ LT+L ++T GA ++ NL L I + G ++ +++L ++N
Sbjct: 354 LVSSMNQLTNLSTHNNKLTSEGAKHISQLNNLTELNISSNPVRIEGANYLNQMTTLKIIN 413
Query: 403 LSQNC 407
+S NC
Sbjct: 414 VS-NC 417
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 92/174 (52%), Gaps = 1/174 (0%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I+ +G+K + L L L L + + GL+++ + ++ L ++ N I +
Sbjct: 248 NTGISVEGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITKLFLQ-HNVIDCDGAQL 306
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
LS +TNL+ L IS +K+T GI ++ L+ +T LN+ + L +S++ L L+
Sbjct: 307 LSTMTNLRLLNISQTKITTEGIKHITSLKNITSLNISINQLNDEALKLVSSMNQLTNLST 366
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ +L+ +G + S++ +L LN+ N + E +L +T L+ +N+ +C G
Sbjct: 367 HNNKLTSEGAKHISQLNNLTELNISSNPVRIEGANYLNQMTTLKIINVSNCRTG 420
>gi|417301579|ref|ZP_12088730.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
gi|327542171|gb|EGF28664.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
Length = 442
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 153/315 (48%), Gaps = 29/315 (9%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
PG++D M+ + S L + L+ + +TD L ++Q L F ++D GLE
Sbjct: 105 PGIDDAGMENLTSL-PKLKYLTLADTAITDETLKTAGKLDSVQGL-FLRRTGVTDEGLEL 162
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S+N
Sbjct: 163 LTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVQLEKSKVTDEGLVKLAPL-PLKSIN 220
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-- 219
+C I MK L L+ LQ SK+ D+ +A LKGL KL L + GC VT
Sbjct: 221 FNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGI 280
Query: 220 ----------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKV 256
L +S L ++ Y++++ C+L S +G + K+ L
Sbjct: 281 QHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGKLTGLTY 340
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316
L L + DE L L NLE LNL S + DE L L +T L+++N++ T + D S
Sbjct: 341 LGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGDDS 400
Query: 317 LRKLAGLSSLKSLNL 331
+LA L +LKS+N+
Sbjct: 401 FLELAKLPNLKSMNV 415
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 161/352 (45%), Gaps = 27/352 (7%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
N+ S + ++ +G+ N K G+ NL L KL+ L +
Sbjct: 71 NVVEFSIANQKGGIEESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADT- 129
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
ITD +K L +++ L + + VTD G+ L GL KL ++L + A +DSL+
Sbjct: 130 AITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAK 189
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIG------------------------SLKVLNLGFN 262
+ +L + L + +++D+G K + + +L+ L ++
Sbjct: 190 IKTLIDVQLEKSKVTDEGLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLEYLQGDYS 249
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
+I D + LKGL+ L+ L + C + EG+ ++ G L L + + D L+ ++
Sbjct: 250 KINDASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQ 309
Query: 323 LSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
L ++ +++ + R + G+A L LTGLT+L L+ + D A + NL L +
Sbjct: 310 LPAVTYVDISECRLASPEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLKS 369
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
+TD + + ++ L LN++ L D + ++ L L S+NV+N+ I
Sbjct: 370 TAVTDESLPVLMKMTKLKTLNVA-GTQLGDDSFLELAKLPNLKSMNVANTSI 420
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 139/291 (47%), Gaps = 4/291 (1%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ ++ LSG+ N + + D+G+ L L KL L L +T L + L S
Sbjct: 85 EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 144
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ L L R ++D+G E + + L+ ++L I D + L + L + L+ +
Sbjct: 145 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVQLEKSKVT 204
Query: 290 DEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
DEGLV L L L+SIN ++ T I+ +++ L +L+ L D +I D +A L L+
Sbjct: 205 DEGLVKLAPLP-LKSINFNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLS 263
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L + G +T G ++ K L E+ + D G+K I L ++T +++S+ C
Sbjct: 264 KLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISE-CR 322
Query: 409 L-TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L + + + + LTGL L + ++ L L NL L L+S VT
Sbjct: 323 LASPEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVT 373
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 129/291 (44%), Gaps = 41/291 (14%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
V + IA KG + +L +L G P T N + D G E + +
Sbjct: 72 VVEFSIANQKGGIEESLQHLSGIPNTTKA-------------TFNGPGIDDAGMENLTSL 118
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
LK L L ITDE L L +++ L L G+ DEGL LTGL+ L +I+L T
Sbjct: 119 PKLKYLTLADTAITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTN 178
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-------------TSLTGLTHLDLFG- 357
I D + LA + +L + L+ ++TD GL L T++ G T + + G
Sbjct: 179 IGDAGMDSLAKIKTLIDVQLEKSKVTDEGLVKLAPLPLKSINFNYCTTINGPT-MKMLGQ 237
Query: 358 -----------ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
++I D+ A L+ L+ L I G +T G++HI +L L ++
Sbjct: 238 TPTLEYLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFEL-RD 296
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCK 456
++ D L++IS L + +++S R+ S G+ L L L L L K
Sbjct: 297 SSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGKLTGLTYLGLWETK 347
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 1/200 (0%)
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
+E L HL G+ N + GI D G+ NLT L L+ + L+ T I+D +L+ L S
Sbjct: 85 EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 144
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
++ L L +TD GL LT L+ L +DL I D+G L K L +++ +T
Sbjct: 145 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVQLEKSKVT 204
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
D G+ + L L +N + + T++++ L L S+I A + LK L
Sbjct: 205 DEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLS 263
Query: 446 NLRSLTLESCKVTANDIKRL 465
L+ L + C VT I+ +
Sbjct: 264 KLKRLRIRGCDVTGEGIQHI 283
>gi|440717669|ref|ZP_20898151.1| hypothetical protein RBSWK_05211 [Rhodopirellula baltica SWK14]
gi|436437289|gb|ELP30945.1| hypothetical protein RBSWK_05211 [Rhodopirellula baltica SWK14]
Length = 442
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 158/317 (49%), Gaps = 33/317 (10%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ--ISDGGL 99
PG++D M+ + S ++L + L+ + +TD LK + SLD F + ++D GL
Sbjct: 105 PGIDDAGMENLKSL-ANLKRLTLADTAITDQ---TLKTVGEMTSLDALFLRRTGVTDEGL 160
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S
Sbjct: 161 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKS 218
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+N +C I MK L L++LQ SK+ D+ +A LKGL KL L + GC VT
Sbjct: 219 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGE 278
Query: 220 ------------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 254
L +S L ++ +++++ C+L S +G + K+ L
Sbjct: 279 GIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLIGL 338
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
L L + DE L L NLE LNL S + DE L L +T L+++N++ T + D
Sbjct: 339 TYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGD 398
Query: 315 GSLRKLAGLSSLKSLNL 331
S +LA L +LKS+N+
Sbjct: 399 DSFLELAKLPNLKSMNV 415
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 179/396 (45%), Gaps = 39/396 (9%)
Query: 69 VTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLE----HLRGLSNLTSLSFRRNNAITAQG 123
+T++G I KD N+ F I GG+E HL G+ N T +F I G
Sbjct: 57 LTEAGYILTKDDDGNV----VEFSIANQKGGIEESLQHLSGIPNTTEATFN-GPGIDDAG 111
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
M+ L NL +L L ITD +K + +T+L
Sbjct: 112 MENLKSLANLKRLTLADT-------------------------AITDQTLKTVGEMTSLD 146
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L + + VTD G+ L GL KL ++L + A +DSL+ + +L + L + +++D+
Sbjct: 147 ALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDE 206
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNL 302
G K + + LK +N + I + L LE+L D I D + L GL+ L
Sbjct: 207 GLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKL 265
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI-T 361
+ + + ++ ++ +AG +L L + D GL ++ L +TH+D+ R+ +
Sbjct: 266 KRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLAS 325
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
G A L L L + D + DL +L LNL ++ +TD++L ++ +T
Sbjct: 326 PEGIAQLGKLIGLTYLGLWETKTNDETLAGFGDLVNLEELNL-KSTAVTDESLPVLMKMT 384
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L +LNV+ +++ L L NL+S+ + + +
Sbjct: 385 KLKTLNVAGTQLGDDSFLELAKLPNLKSMNVANTSI 420
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 140/291 (48%), Gaps = 4/291 (1%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ ++ LSG+ N + + D+G+ LK L L L L +T L ++ + S
Sbjct: 85 EESLQHLSGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 144
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L L L R ++D+G E + + L+ ++L I D + L + L + L+ +
Sbjct: 145 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 204
Query: 290 DEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
DEGLV L L L+SIN ++ T I+ +++ L +L++L D +I D +A L L+
Sbjct: 205 DEGLVKLAPLP-LKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLS 263
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L + G +T G ++ K L E+ + D G+K I L ++T +++S+ C
Sbjct: 264 KLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISE-CR 322
Query: 409 L-TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L + + + + L GL L + ++ L L NL L L+S VT
Sbjct: 323 LASPEGIAQLGKLIGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVT 373
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 99/200 (49%), Gaps = 1/200 (0%)
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
+E L HL G+ N + GI D G+ NL L NL+ + L+ T I+D +L+ + ++S
Sbjct: 85 EESLQHLSGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 144
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L +L L +TD GL LT L+ L +DL I D+G L K L +++ +T
Sbjct: 145 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 204
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
D G+ + L L +N + + T++++ L +L S+I A + LK L
Sbjct: 205 DEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLS 263
Query: 446 NLRSLTLESCKVTANDIKRL 465
L+ L + C VT I+ +
Sbjct: 264 KLKRLRIRGCDVTGEGIQHI 283
>gi|46445969|ref|YP_007334.1| hypothetical protein pc0335 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399610|emb|CAF23059.1| hypothetical protein pc0335 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 642
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 171/310 (55%), Gaps = 10/310 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN +TD+ + L NLK LQ+ +C TD+G+A+L L L LNL C
Sbjct: 305 EIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYC 364
Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
+T A L L+ L L +LNL+ C L+D G + + +L LNL + N++TD L H
Sbjct: 365 KNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDAGLAH 424
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
L L L L+L C + + GL +L L L+ ++L++ ++D L L+ L +L+ L
Sbjct: 425 LTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSLVALQHL 484
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTD 386
L +TD GLA L L LTHLDL + ITD+G A+L L+ L + G LTD
Sbjct: 485 KLCCCVSLTDAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTD 544
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLK 445
G+ H+ L +L L L++ NLTD L ++ L L L++S R +T+AGL HL PL
Sbjct: 545 VGLAHLTRLVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLV 604
Query: 446 NLRSLTLESC 455
L+ L L C
Sbjct: 605 ALQRLDLRCC 614
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 159/299 (53%), Gaps = 10/299 (3%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL+ L C +D GL HL L L L+ +T G+
Sbjct: 314 NAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYCKNLTDAGLA 373
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A L+ L L+L C + GL +L L+ L LN+ WCN +TD+ + L+ L L
Sbjct: 374 HLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDAGLAHLTPLVALTH 433
Query: 185 LQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLS 241
L + C K+T+ G+A+L L L L+L C +T A L LS+L +L +L L C L+
Sbjct: 434 LDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSLVALQHLKLCCCVSLT 493
Query: 242 DDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
D G + + +L L+L FN ITD L HL L L+ L L C + D GL +LT
Sbjct: 494 DAGLAHLAPLVALTHLDLSWCFN-ITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTR 552
Query: 299 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 355
L L+ + L+ ++D L L L +L+ L+L + R++T+ GLA LT L L LDL
Sbjct: 553 LVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDL 611
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 117/351 (33%), Positives = 177/351 (50%), Gaps = 33/351 (9%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 159
L SN + +L+F +N +T + NL L L+ C GL +L LM L+
Sbjct: 299 LNHFSNEIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQH 358
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 217
LN+ +C +TD+ + L+ L L+ L +S C +TD+G+A+L L LT LNL C +T
Sbjct: 359 LNLSYCKNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLT 418
Query: 218 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 275
A L L+ L +L +L+L C +L++ G + + +L+ L+L + +TD L HL L
Sbjct: 419 DAGLAHLTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSL 478
Query: 276 TNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDA 333
L+ L L C + D GL +L L L ++LS+ I+D L L L +L+ L L
Sbjct: 479 VALQHLKLCCCVSLTDAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSG 538
Query: 334 -RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
R++TD GLA LT L L HL L C LTDAG+ H+
Sbjct: 539 CRRLTDVGLAHLTRLVALQHL----------------------GLNRCDN-LTDAGLAHL 575
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLK 442
L +L L+LS+ LT+ L ++ L L L++ +++T A L H K
Sbjct: 576 TPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAHFK 626
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 157/296 (53%), Gaps = 8/296 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+ TD+GL HL LQ L+ ++C ++D GL HL L L L+ + +T G+
Sbjct: 341 NFTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHL 400
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L L+L C ++ GL +L L+ L L+++ C+ +T+ + L+ L L+ L
Sbjct: 401 TPLVALTHLNLSWCNKLTDAGLAHLTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLD 460
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
++ C +TD+G+A+L L L L L C +T A L L+ L +L +L+L+ C ++D
Sbjct: 461 LNYCRNLTDAGLAHLSSLVALQHLKLCCCVSLTDAGLAHLAPLVALTHLDLSWCFNITDA 520
Query: 244 GCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTN 301
G + + +L+ L L G +TD L HL L L+ L L+ C + D GL +LT L N
Sbjct: 521 GLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLGLNRCDNLTDAGLAHLTPLIN 580
Query: 302 LESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 355
L+ ++LS +++ L L L +L+ L+L ++T LA L HLDL
Sbjct: 581 LQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAHFKFLVAKPHLDL 636
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 124/279 (44%), Gaps = 57/279 (20%)
Query: 239 QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 296
L+D +LKVL L + TD L HL L L+ LNL C + D GL +L
Sbjct: 316 HLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHL 375
Query: 297 TGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLD 354
L L+ +NLS ++D L L L +L LNL ++TD GLA LT L LTHLD
Sbjct: 376 APLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDAGLAHLTPLVALTHLD 435
Query: 355 L--------------------------FGARITDSGAAYLRNFKNLRSLEICG-GGLTDA 387
L + +TD+G A+L + L+ L++C LTDA
Sbjct: 436 LRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSLVALQHLKLCCCVSLTDA 495
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR--------------- 432
G+ H+ L +LT L+LS N+TD L ++ L L L +S R
Sbjct: 496 GLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVA 555
Query: 433 -----------ITSAGLRHLKPLKNLRSLTLESCKVTAN 460
+T AGL HL PL NL+ L L C+ N
Sbjct: 556 LQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTN 594
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 77/162 (47%), Gaps = 26/162 (16%)
Query: 302 LESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR 359
+E++N S ++D L L +LK L L A TD GLA LT L L HL+L
Sbjct: 306 IEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNL---- 361
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
+Y +N LTDAG+ H+ L L LNLS NLTD L ++
Sbjct: 362 ------SYCKN-------------LTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTP 402
Query: 420 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L L LN+S +++T AGL HL PL L L L C N
Sbjct: 403 LVALTHLNLSWCNKLTDAGLAHLTPLVALTHLDLRECDKLTN 444
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 58 SLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS ++TD+GL HL LQ L + C +++D GL HL L L L R
Sbjct: 505 ALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLGLNRC 564
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ +T G+ LINL LDL C ++ + GL +L L+ L+ L+++ CN +T + +
Sbjct: 565 DNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAH 624
Query: 176 LSGLTNLKSLQISCSK 191
L L + K
Sbjct: 625 FKFLVAKPHLDLRWYK 640
>gi|108763744|ref|YP_632240.1| leucine-rich repeat-containing protein [Myxococcus xanthus DK 1622]
gi|108467624|gb|ABF92809.1| leucine-rich repeat domain protein [Myxococcus xanthus DK 1622]
Length = 624
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 131/461 (28%), Positives = 206/461 (44%), Gaps = 39/461 (8%)
Query: 16 YSRCLTEVSLEA--------FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
Y+ L V EA R+ + +L G GV + V Q S ++++ +SG+
Sbjct: 90 YAEPLRPVRTEAEAREIAAVLREHHVPELSFGAV-GVPAPELLVALLQESGVVALQVSGT 148
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D ++ L L++ + L++L N ++++ GL L+ + L L +
Sbjct: 149 DFGNAHLASLENATQLEALHLN-ATRVTNVGLAPLKRMRRLAVLRLDETPV-------SD 200
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
AGL +L + R + G V+ +GL L +P L+ L +
Sbjct: 201 AGLASLSEHTTLRRVTLAGTAVSPQGLGFLAR--------------QP-----GLEELDL 241
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S + V D+ +A L G L LNL G VT A L LSA+ SL L L R SD
Sbjct: 242 SDTAVDDTVLAVLPG-APLHTLNLSGTKVTNAGLRGLSAMPSLRRLGLARTAASDASLLH 300
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
+ + L+ L+LG ++TD L+HL L L +L L I GL +L GL+ LE+++L
Sbjct: 301 ITGLRELEALHLGSTQVTDAGLLHLAKLPALRALVLSKARIRGAGLRHLAGLSRLEALHL 360
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
T + D +LR L GL+ L+ L+L IT TGL L++L L L L G +TD
Sbjct: 361 DDTLVGDSALRHLRGLNELRELDLSRTAITGTGLQELSTLVALESLWLSGLALTDDSLTA 420
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSL 426
L L L + + + H+ L L+LS+ TD+ + I GL SL
Sbjct: 421 LAPLSQLTRLALSHTPIGPEALNHLGSRPLLRHLDLSK-TGFTDEWVPSIRQAFPGLHSL 479
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ +T AGL L ++ + + + + RL +
Sbjct: 480 KAERTLLTDAGLGQFAEWTELEAIHVAGTLINGSGLTRLHT 520
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 113/430 (26%), Positives = 196/430 (45%), Gaps = 56/430 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L V L+G+ V+ GL L L+ LD + + D L L G + L +L+
Sbjct: 207 SEHTTLRRVTLAGTAVSPQGLGFLARQPGLEELDLSDT-AVDDTVLAVLPG-APLHTLNL 264
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+T G++ + + +L +L L R L+++ GL +LE+L++ +TD+ +
Sbjct: 265 S-GTKVTNAGLRGLSAMPSLRRLGLARTAASDASLLHITGLRELEALHLG-STQVTDAGL 322
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+ L L++L +S +++ +G+ +L GL +L L+L+ V + L L L L L
Sbjct: 323 LHLAKLPALRALVLSKARIRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELREL 382
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L+R ++ G ++ S + +L+ L L +TD+ L L L+ L L L IG E L
Sbjct: 383 DLSRTAITGTGLQELSTLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEAL 442
Query: 294 VNL-------------TGLTN--LESINLSFTGI----------SDGSLRKLAGLSSLKS 328
+L TG T+ + SI +F G+ +D L + A + L++
Sbjct: 443 NHLGSRPLLRHLDLSKTGFTDEWVPSIRQAFPGLHSLKAERTLLTDAGLGQFAEWTELEA 502
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
+++ I +GL L +L LT LDL R+ G L+ F L L + G D
Sbjct: 503 IHVAGTLINGSGLTRLHTLARLTTLDLGATRLDSEGQKALQGFTKLVWLSVAGVRTGDEM 562
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
+ H+ L +L ++ +++T AGL L L +LR
Sbjct: 563 LGHLPR---------------------------SLRTLYLTRTKVTDAGLPALHKLPHLR 595
Query: 449 SLTLESCKVT 458
L L V+
Sbjct: 596 ELDLRGTAVS 605
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 147/315 (46%), Gaps = 13/315 (4%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++ L + VTD+GL+HL L++L + +I GL HL GLS L +L + +
Sbjct: 309 ALHLGSTQVTDAGLLHLAKLPALRALVLSKA-RIRGAGLRHLAGLSRLEALHLD-DTLVG 366
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN--CITDSDMKPLSG 178
++ GL L +LDL R GL L L+ LESL W + +TD + L+
Sbjct: 367 DSALRHLRGLNELRELDLSRTAITGTGLQELSTLVALESL---WLSGLALTDDSLTALAP 423
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
L+ L L +S + + + +L L L+L T + S+ A L L R
Sbjct: 424 LSQLTRLALSHTPIGPEALNHLGSRPLLRHLDLSKTGFTDEWVPSIRQAFPGLHSLKAER 483
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
L+D G +F++ L+ +++ I L L L L +L+L + + EG L
Sbjct: 484 TLLTDAGLGQFAEWTELEAIHVAGTLINGSGLTRLHTLARLTTLDLGATRLDSEGQKALQ 543
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
G T L + LS G+ G L L SL++L L ++TD GL AL L L LDL
Sbjct: 544 GFTKL--VWLSVAGVRTGD-EMLGHLPRSLRTLYLTRTKVTDAGLPALHKLPHLRELDLR 600
Query: 357 GARI-TDSGAAYLRN 370
G + T++ +A R
Sbjct: 601 GTAVSTEARSALARE 615
>gi|290984426|ref|XP_002674928.1| predicted protein [Naegleria gruberi]
gi|284088521|gb|EFC42184.1| predicted protein [Naegleria gruberi]
Length = 612
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 114/447 (25%), Positives = 206/447 (46%), Gaps = 27/447 (6%)
Query: 32 ALQDLCLGQYPGVN-DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL---- 86
++ +LC+ GV D Q L S+++ G D+ D + + + L SL
Sbjct: 84 SVTNLCIPYVVGVKIDSESVTYIGQLKQLTSLEIQGMDIDDEHVESMAELKQLTSLYISG 143
Query: 87 -------------DFNFCIQ-------ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
FN + I + G +++ L LTSL N++I G+
Sbjct: 144 NYIGSEGVKIISESFNKLTKLNISANYIDNVGAKYISQLKQLTSLEIACNDSIGDAGIIY 203
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+GL +L LD+ R GG + +L LNI C+ I D ++ +S L L L
Sbjct: 204 LSGLEHLTNLDISRIKIGSGGAQYIGKFEQLTCLNINTCS-IDDKVLQSISQLKKLIVLH 262
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
IS ++++ G Y+ L +LT L + + + +S L L YL++ + + ++G +
Sbjct: 263 ISENEISIEGAKYISKLNQLTSLYISESGIRSEQARYISELKQLTYLDVTKNYVREEGAK 322
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN 306
+ L L + N + ++ ++ +T L L++ I +G+ ++ L L ++
Sbjct: 323 YIRNMKKLTTLLVSENYVCEQGAEYISEMTQLTKLDISVNNINKKGVFHICKLKQLTELS 382
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
+ + L ++ L +L LN ++ G+ ++ L LT L++ RI+D GA
Sbjct: 383 ILESHFDGEGLEYISELKNLTILNFPYSEMRGVGVKYISQLNQLTCLNIPYNRISDEGAK 442
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
Y+ K L+ L I ++ G ++ DL +LT L ++ N NL + IS L L L
Sbjct: 443 YISELKQLKELSISDNSISSEGANYLTDLKNLTKLVITGN-NLGNDGAMHISELKKLTIL 501
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLE 453
++S++ I+S G +HL LKNL L ++
Sbjct: 502 DISHNSISSEGAKHLSDLKNLTELVIK 528
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 161/329 (48%), Gaps = 3/329 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+IS G +++ L+ LTSL + + I ++ + + L L LD+ + G ++
Sbjct: 267 EISIEGAKYISKLNQLTSL-YISESGIRSEQARYISELKQLTYLDVTKNYVREEGAKYIR 325
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ KL +L + N + + + +S +T L L IS + + G+ ++ L++LT L++
Sbjct: 326 NMKKLTTLLVSE-NYVCEQGAEYISEMTQLTKLDISVNNINKKGVFHICKLKQLTELSIL 384
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
L+ +S L +L LN ++ G + S++ L LN+ +N I+DE ++
Sbjct: 385 ESHFDGEGLEYISELKNLTILNFPYSEMRGVGVKYISQLNQLTCLNIPYNRISDEGAKYI 444
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
L L+ L++ I EG LT L NL + ++ + + ++ L L L++
Sbjct: 445 SELKQLKELSISDNSISSEGANYLTDLKNLTKLVITGNNLGNDGAMHISELKKLTILDIS 504
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
I+ G L+ L LT L + G + + GA + K L L++C ++D G K I
Sbjct: 505 HNSISSEGAKHLSDLKNLTELVIKGNNLGNDGAMSISELKQLTHLDVCDNNISDEGFKAI 564
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLT 421
++ LT L++ +N +++ + +E I +T
Sbjct: 565 SKMNQLTRLSIYEN-SISGEGVEFIRKMT 592
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 168/364 (46%), Gaps = 12/364 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL--EH 101
++DK + I SQ L+ + +S ++++ G ++ + L SL IS+ G+ E
Sbjct: 244 IDDKVLQSI-SQLKKLIVLHISENEISIEGAKYISKLNQLTSL------YISESGIRSEQ 296
Query: 102 LRGLSNLTSLSF--RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
R +S L L++ N + +G K + L L + G + + +L
Sbjct: 297 ARYISELKQLTYLDVTKNYVREEGAKYIRNMKKLTTLLVSENYVCEQGAEYISEMTQLTK 356
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L+I N I + + L L L I S G+ Y+ L+ LT+LN +
Sbjct: 357 LDIS-VNNINKKGVFHICKLKQLTELSILESHFDGEGLEYISELKNLTILNFPYSEMRGV 415
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ +S L L LN+ ++SD+G + S++ LK L++ N I+ E +L L NL
Sbjct: 416 GVKYISQLNQLTCLNIPYNRISDEGAKYISELKQLKELSISDNSISSEGANYLTDLKNLT 475
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L + +G++G ++++ L L +++S IS + L+ L +L L + + +
Sbjct: 476 KLVITGNNLGNDGAMHISELKKLTILDISHNSISSEGAKHLSDLKNLTELVIKGNNLGND 535
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
G +++ L LTHLD+ I+D G + L L I ++ GV+ I+ ++ T
Sbjct: 536 GAMSISELKQLTHLDVCDNNISDEGFKAISKMNQLTRLSIYENSISGEGVEFIRKMTQST 595
Query: 400 LLNL 403
+++
Sbjct: 596 FIDI 599
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 106/213 (49%), Gaps = 8/213 (3%)
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA- 321
+I E + ++ L L SL + I DE + ++ L L S+ +S I ++ ++
Sbjct: 97 KIDSESVTYIGQLKQLTSLEIQGMDIDDEHVESMAELKQLTSLYISGNYIGSEGVKIISE 156
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-GARITDSGAAYLRNFKNLRSLEIC 380
+ L LN+ A I + G ++ L LT L++ I D+G YL ++L +L+I
Sbjct: 157 SFNKLTKLNISANYIDNVGAKYISQLKQLTSLEIACNDSIGDAGIIYLSGLEHLTNLDIS 216
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
+ G ++I LT LN++ C++ DK L+ IS L L+ L++S + I+ G ++
Sbjct: 217 RIKIGSGGAQYIGKFEQLTCLNIN-TCSIDDKVLQSISQLKKLIVLHISENEISIEGAKY 275
Query: 441 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+ L L SL ++ + I+ Q+R + L
Sbjct: 276 ISKLNQLTSLY-----ISESGIRSEQARYISEL 303
>gi|32477504|ref|NP_870498.1| adenylate cyclase regulatory protein [Rhodopirellula baltica SH 1]
gi|32448058|emb|CAD77575.1| conserved hypothetical protein-putative adenylate cyclase
regulatory protein [Rhodopirellula baltica SH 1]
Length = 513
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 157/322 (48%), Gaps = 9/322 (2%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ--ISDGGL 99
PG++D M+ + S ++L + L+ + +TD LK + SLD F + ++D GL
Sbjct: 176 PGIDDAGMENLKSL-ANLKRLTLADTAITDQ---TLKTVGEMTSLDALFLRRTGVTDEGL 231
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S
Sbjct: 232 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKS 289
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+N +C I MK L L++LQ SK+ D +A LKGL KL L + GC VT
Sbjct: 290 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGE 349
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI-TDECLVHLKGLTNL 278
+ ++ +L L + DDG + S++ ++ +++ + + E + L LT L
Sbjct: 350 GIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLTGL 409
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L L DE L L NLE +NL T ++D SL L ++ LK+LN+ Q+ D
Sbjct: 410 TYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGD 469
Query: 339 TGLAALTSLTGLTHLDLFGARI 360
L L L +++ I
Sbjct: 470 DSFLELAKLPNLKSMNVANTSI 491
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 149/316 (47%), Gaps = 50/316 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQ---------------------SLDFNFCIQ--ISDGGLE 100
+G + D+G+ +LK +NL+ SLD F + ++D GLE
Sbjct: 173 FNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTSLDALFLRRTGVTDEGLE 232
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S+
Sbjct: 233 LLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKSI 290
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA- 219
N +C I MK L L++LQ SK+ D +A LKGL KL L + GC VT
Sbjct: 291 NFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEG 350
Query: 220 -----------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLK 255
L +S L ++ +++++ C+L S +G + K+ L
Sbjct: 351 IQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLTGLT 410
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L + DE L L NLE LNL S + DE L L +T L+++N++ T + D
Sbjct: 411 YLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGDD 470
Query: 316 SLRKLAGLSSLKSLNL 331
S +LA L +LKS+N+
Sbjct: 471 SFLELAKLPNLKSMNV 486
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 105/396 (26%), Positives = 181/396 (45%), Gaps = 39/396 (9%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLE----HLRGLSNLTSLSFRRNNAITAQG 123
+T++G I K D N+ F I GG+E HLRG+ N T +F I G
Sbjct: 128 LTEAGYILTKNDDGNV----VEFSIANQKGGIEESLQHLRGIPNTTEATFN-GPGIDDAG 182
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
M+ L NL +L L ITD +K + +T+L
Sbjct: 183 MENLKSLANLKRLTLADT-------------------------AITDQTLKTVGEMTSLD 217
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L + + VTD G+ L GL KL ++L + A +DSL+ + +L + L + +++D+
Sbjct: 218 ALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDE 277
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNL 302
G K + + LK +N + I + L LE+L D I DE + L GL+ L
Sbjct: 278 GLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKL 336
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI-T 361
+ + + ++ ++ +AG +L L + D GL ++ L +TH+D+ R+ +
Sbjct: 337 KRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLAS 396
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
G A L L L + D + DL +L LNL ++ +TD++L ++ +T
Sbjct: 397 PEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNL-KSTAVTDESLPVLMKMT 455
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L +LNV+ +++ L L NL+S+ + + +
Sbjct: 456 KLKTLNVAGTQLGDDSFLELAKLPNLKSMNVANTSI 491
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 140/291 (48%), Gaps = 4/291 (1%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ ++ L G+ N + + D+G+ LK L L L L +T L ++ + S
Sbjct: 156 EESLQHLRGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 215
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L L L R ++D+G E + + L+ ++L I D + L + L + L+ +
Sbjct: 216 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 275
Query: 290 DEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
DEGLV L L L+SIN ++ T I+ +++ L +L++L D +I D +A L L+
Sbjct: 276 DEGLVKLAPLP-LKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLS 334
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L + G +T G ++ K L E+ + D G+K I L ++T +++S+ C
Sbjct: 335 KLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISE-CR 393
Query: 409 L-TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L + + + + LTGL L + ++ L L NL L L+S VT
Sbjct: 394 LASPEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVT 444
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 1/200 (0%)
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
+E L HL+G+ N + GI D G+ NL L NL+ + L+ T I+D +L+ + ++S
Sbjct: 156 EESLQHLRGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 215
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L +L L +TD GL LT L+ L +DL I D+G L K L +++ +T
Sbjct: 216 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 275
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
D G+ + L L +N + + T++++ L +L S+I + LK L
Sbjct: 276 DEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLS 334
Query: 446 NLRSLTLESCKVTANDIKRL 465
L+ L + C VT I+ +
Sbjct: 335 KLKRLRIRGCDVTGEGIQHI 354
>gi|290996081|ref|XP_002680611.1| predicted protein [Naegleria gruberi]
gi|284094232|gb|EFC47867.1| predicted protein [Naegleria gruberi]
Length = 412
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 155/295 (52%), Gaps = 7/295 (2%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ K ++ + L SL IS +++ D G Y+ +++LT L++ + +S + L
Sbjct: 118 EAKFITEMKQLTSLDISENQIGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLT 177
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
LN++ +SD+G + S++ L L++ N I DE +++ + L SLN+ I DE
Sbjct: 178 SLNISYNAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSISDE 237
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G ++ + L S+++ F IS + ++ + L SL++ +I D G+ L+ + LT
Sbjct: 238 GAKFISEMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLT 297
Query: 352 HLDLFGARIT------DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L + G IT + GA ++ K L SL+I ++D G K+I ++ LT LN+S
Sbjct: 298 SLTISGNEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISY 357
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
N ++ + + IS + L SL++ ++RI G +++ +K L SL + + +N
Sbjct: 358 NS-ISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDNQFNSN 411
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 134/258 (51%), Gaps = 11/258 (4%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ + L L+++ Q+ D+G + S++ L L++ EI DE ++ + L SLN+
Sbjct: 122 ITEMKQLTSLDISENQIGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLTSLNI 181
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
I DEG ++ + L S+++ I D + + + L SLN+ I+D G
Sbjct: 182 SYNAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSISDEGAKF 241
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT LD+ I+ GA ++ K L SL+I + D GVK++ ++ LT L +
Sbjct: 242 ISEMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTI 301
Query: 404 SQN----CN-LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
S N CN ++++ + IS + L SL++S + I+ G +++ +K L SL + ++
Sbjct: 302 SGNEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNSIS 361
Query: 459 A------NDIKRLQSRDL 470
+++K+L S D+
Sbjct: 362 GEGAKFISEMKQLTSLDI 379
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 145/284 (51%), Gaps = 9/284 (3%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+S + + D G ++ + L SLD + I+I D G +++ + LTSL+ NA
Sbjct: 128 LTSLDISENQIGDEGAKYISEMRQLTSLDIS-DIEIGDEGAKYISEMKQLTSLNISY-NA 185
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I+ +G K + + L+ L + + G ++ + +L SLNI + N I+D K +S
Sbjct: 186 ISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISY-NSISDEGAKFISE 244
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-- 236
+ L SL I ++++ G ++ +++LT L++ + + LS + L L ++
Sbjct: 245 MKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTISGN 304
Query: 237 ---RC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
C Q+S++G + S++ L L++ +N I+DE ++ + L SLN+ I EG
Sbjct: 305 EITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNSISGEG 364
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
++ + L S+++ I D + ++ + L SLN+ Q
Sbjct: 365 AKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDNQF 408
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 132/261 (50%), Gaps = 9/261 (3%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S ++ D G ++ + L SL+ ++ ISD G + + + L SL
Sbjct: 147 SEMRQLTSLDISDIEIGDEGAKYISEMKQLTSLNISYN-AISDEGAKFISEMKQLMSLHI 205
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ N I +G K + L L++ + G + + +L SL+I + N I+
Sbjct: 206 YK-NLIGDEGAKYIREMKQLTSLNISYNSISDEGAKFISEMKQLTSLDIVF-NEISGEGA 263
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS------LSAL 227
K +S + L SL IS +++ D G+ YL +++LT L + G +T S +S +
Sbjct: 264 KFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTISGNEITYCNQISEEGAKFISEM 323
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L+++ +SD+G + S++ L LN+ +N I+ E + + L SL++ S
Sbjct: 324 KQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNSISGEGAKFISEMKQLTSLDIVSNR 383
Query: 288 IGDEGLVNLTGLTNLESINLS 308
IGDEG ++ + L S+N+S
Sbjct: 384 IGDEGAKYISEMKQLTSLNIS 404
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 35/182 (19%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL-----DFN 89
D+ + G K++ S+ L S+D+S +++ D G+ +L + L SL +
Sbjct: 252 DIVFNEISGEGAKFI----SEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTISGNEIT 307
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
+C QIS+ G + + + LTSL N I+ +G K
Sbjct: 308 YCNQISEEGAKFISEMKQLTSLDISY-NLISDEGAKY----------------------- 343
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+ + +L SLNI + N I+ K +S + L SL I +++ D G Y+ +++LT L
Sbjct: 344 -ISEMKQLTSLNISY-NSISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSL 401
Query: 210 NL 211
N+
Sbjct: 402 NI 403
>gi|430746590|ref|YP_007205719.1| hypothetical protein Sinac_5908 [Singulisphaera acidiphila DSM
18658]
gi|430018310|gb|AGA30024.1| hypothetical protein Sinac_5908 [Singulisphaera acidiphila DSM
18658]
Length = 506
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 191/413 (46%), Gaps = 50/413 (12%)
Query: 47 KWM-DVIASQ-GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ------ISDGG 98
KWM D ++++V L G +V D L++ L +++ F IQ ++ G
Sbjct: 112 KWMRDAFGPDLFDTVVNVHLEGDNVDDE---LLENVGKLHGVEW-FTIQGHAAPNLTPAG 167
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ LR LS L LS R F T HG L L G +L
Sbjct: 168 MAQLRTLSRLKGLSVR-----------GF--------------TDSHGFLAGLMGKTRLS 202
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT- 217
L + +TD +M + GLT+L+ LQ+ VTD G A++ L++L+LL++ G +T
Sbjct: 203 HLRLPEA-AVTDDEMAIIGGLTDLEVLQLDGRNVTDRGFAHVANLKELSLLDMPGVRITD 261
Query: 218 -AACLD--SLSALG-SLFYLNLNRCQLSDDGCEKFSKI---GSLKVLNLGFNEITDECLV 270
A D L LG S R S G + +L L LG +I D L
Sbjct: 262 LAPVTDLVQLDVLGLSPDRATFARSVPSPGGPSSLGPLRGLTNLTQLTLGATQIEDRELA 321
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG-LSSLKSL 329
GL L L + I + GL L +L + + T I+D LR L+ L +L L
Sbjct: 322 VAAGLPKLSYLMIGGRRITEAGLARLAESKSLTGLRFTDTSIAD--LRPLSPRLHALWGL 379
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
++ +TD GL L+ T + L + G+R+TD+G +L +L L + +TDAG+
Sbjct: 380 YMENSALTDAGLEPLSDATRIGDLTITGSRMTDAGLHHLAPLPSLWKLRLGRSAITDAGL 439
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+K L SL L+L++ LTD ++E ++G L SLN+ S I+ AG+ LK
Sbjct: 440 GRLKSLKSLETLSLTE-TKLTDSSVETLAGFQSLKSLNLDRSGISPAGIERLK 491
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 135/293 (46%), Gaps = 20/293 (6%)
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ +T +G+A L+ L +L L++ G + L L L +L L ++DD
Sbjct: 159 AAPNLTPAGMAQLRTLSRLKGLSVRGFTDSHGFLAGLMGKTRLSHLRLPEAAVTDDEMAI 218
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
+ L+VL L +TD H+ L L L++ I D L +T L L+ + L
Sbjct: 219 IGGLTDLEVLQLDGRNVTDRGFAHVANLKELSLLDMPGVRITD--LAPVTDLVQLDVLGL 276
Query: 308 SFTGIS----------DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
S + SL L GL++L L L A QI D LA L L++L + G
Sbjct: 277 SPDRATFARSVPSPGGPSSLGPLRGLTNLTQLTLGATQIEDRELAVAAGLPKLSYLMIGG 336
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL--TLLNLS-QNCNLTDKTL 414
RIT++G A L K+L L TD + ++ LS L L +N LTD L
Sbjct: 337 RRITEAGLARLAESKSLTGLR-----FTDTSIADLRPLSPRLHALWGLYMENSALTDAGL 391
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
E +S T + L ++ SR+T AGL HL PL +L L L +T + RL+S
Sbjct: 392 EPLSDATRIGDLTITGSRMTDAGLHHLAPLPSLWKLRLGRSAITDAGLGRLKS 444
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 150/325 (46%), Gaps = 31/325 (9%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSD--MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
G+ L+ L +L+ L+++ TDS + L G T L L++ + VTD +A + GL
Sbjct: 167 GMAQLRTLSRLKGLSVR---GFTDSHGFLAGLMGKTRLSHLRLPEAAVTDDEMAIIGGLT 223
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
L +L L+G VT ++ L L L++ +++D + + L VL L +
Sbjct: 224 DLEVLQLDGRNVTDRGFAHVANLKELSLLDMPGVRITD--LAPVTDLVQLDVLGLSPDRA 281
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS 324
T V G G L L GLTNL + L T I D L AGL
Sbjct: 282 TFARSVPSPG--------------GPSSLGPLRGLTNLTQLTLGATQIEDRELAVAAGLP 327
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR----NFKNLRSLEIC 380
L L + R+IT+ GLA L LT G R TD+ A LR L L +
Sbjct: 328 KLSYLMIGGRRITEAGLARLAESKSLT-----GLRFTDTSIADLRPLSPRLHALWGLYME 382
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
LTDAG++ + D + + L ++ +TD L ++ L L L + S IT AGL
Sbjct: 383 NSALTDAGLEPLSDATRIGDLTIT-GSRMTDAGLHHLAPLPSLWKLRLGRSAITDAGLGR 441
Query: 441 LKPLKNLRSLTLESCKVTANDIKRL 465
LK LK+L +L+L K+T + ++ L
Sbjct: 442 LKSLKSLETLSLTETKLTDSSVETL 466
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 34/190 (17%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLS--FRRNNAIT 120
+ G +T++GL L + +L L F +D + LR LS L +L + N+A+T
Sbjct: 334 IGGRRITEAGLARLAESKSLTGLRF------TDTSIADLRPLSPRLHALWGLYMENSALT 387
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G++ L TRI G + + G + +TD+ + L+ L
Sbjct: 388 DAGLEP-----------LSDATRI--GDLTITG------------SRMTDAGLHHLAPLP 422
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L L++ S +TD+G+ LK L+ L L+L +T + +++L+ SL LNL+R +
Sbjct: 423 SLWKLRLGRSAITDAGLGRLKSLKSLETLSLTETKLTDSSVETLAGFQSLKSLNLDRSGI 482
Query: 241 SDDGCEKFSK 250
S G E+ +
Sbjct: 483 SPAGIERLKQ 492
>gi|156406568|ref|XP_001641117.1| predicted protein [Nematostella vectensis]
gi|156228254|gb|EDO49054.1| predicted protein [Nematostella vectensis]
Length = 803
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 188/400 (47%), Gaps = 57/400 (14%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL- 130
+G HL+ L L N C +I +S L + A+T + + AF
Sbjct: 416 AGQRHLQPLVTLGVLPHNVCDKI----------ISRLVE-----DKALTPKVLHAFISCC 460
Query: 131 INLVKLDLERCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ +KLD C + L L+ +L L+IK C ITD ++ + L L +LQ+
Sbjct: 461 LRYIKLD---CYLLVTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLD 517
Query: 189 CSKVTDSGIAYLKG----LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+K++D G+ Y G +Q L L+L G VT SL+ L L L +++
Sbjct: 518 NTKISDKGLMYFSGHANCIQTLVHLSLNGTGVTNQGTASLADWKILRILGLENTKIT--S 575
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
+ + LK LN+ F +TDECLV L +L SLN+ + D GL +L GL L S
Sbjct: 576 LDVIRHLQHLKTLNVAFTGVTDECLVALNSHPSLSSLNILQTSVTDRGLQHLKGLP-LSS 634
Query: 305 INLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
++LS + I+D ++ +AG++SL L L ++TD G+ L+ L L L++ +TD
Sbjct: 635 LDLSDYRNITDSGVQYIAGMTSLTRLLLSNTRLTDEGMVQLSGLAKLVELNVDRTVVTDK 694
Query: 364 GAAYLRNFKNLRSLEICGGGLTDA--------------------------GVKHIKDLSS 397
G+ L NF NL+ L + G+TD G+KH+ +L+S
Sbjct: 695 GSRVLSNFANLQILGLSSTGVTDKLLRDGVLNRCKKLCKLNLSRTSVTNRGIKHL-ELNS 753
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
LTLLNL D L L++G L +L +SN S G
Sbjct: 754 LTLLNLDWTRVTADCGL-LLTGCPALKALRMSNCTPPSPG 792
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 141/280 (50%), Gaps = 27/280 (9%)
Query: 182 LKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLNLNRCQ 239
L+ +++ C VT+ +A L+ ++L L+++ CP+ T L+++ L +L L L+ +
Sbjct: 461 LRYIKLDCYLLVTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLDNTK 520
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+SD G FS H + L L+L+ G+ ++G +L
Sbjct: 521 ISDKGLMYFSG--------------------HANCIQTLVHLSLNGTGVTNQGTASLADW 560
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
L + L T I+ SL + L LK+LN+ +TD L AL S L+ L++
Sbjct: 561 KILRILGLENTKIT--SLDVIRHLQHLKTLNVAFTGVTDECLVALNSHPSLSSLNILQTS 618
Query: 360 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+TD G +L+ L SL++ +TD+GV++I ++SLT L LS N LTD+ + +S
Sbjct: 619 VTDRGLQHLKGLP-LSSLDLSDYRNITDSGVQYIAGMTSLTRLLLS-NTRLTDEGMVQLS 676
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
GL LV LNV + +T G R L NL+ L L S VT
Sbjct: 677 GLAKLVELNVDRTVVTDKGSRVLSNFANLQILGLSSTGVT 716
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 171/368 (46%), Gaps = 38/368 (10%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGV-NDKWMDVIASQGSSL 59
+LP ++ +I + LV + LT L AF C L+ + L Y V ND ++ +
Sbjct: 429 VLPHNVCDKIISRLVEDKALTPKVLHAFISCCLRYIKLDCYLLVTNDLLAELRFHRQLVH 488
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN----LTSLSFRR 115
LS+ S +TD L + D L +L + +ISD GL + G +N L LS
Sbjct: 489 LSIK-SCPIITDKALEAVVDLPALTTLQLDNT-KISDKGLMYFSGHANCIQTLVHLSLN- 545
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T QG + A L L LE T+I L ++ L L++LN+ + +TD +
Sbjct: 546 GTGVTNQGTASLADWKILRILGLEN-TKI-TSLDVIRHLQHLKTLNVAFTG-VTDECLVA 602
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ +L SL I + VTD G+ +LKGL LS+L Y N
Sbjct: 603 LNSHPSLSSLNILQTSVTDRGLQHLKGL-------------------PLSSLDLSDYRN- 642
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++D G + + + SL L L +TDE +V L GL L LN+D + D+G
Sbjct: 643 ----ITDSGVQYIAGMTSLTRLLLSNTRLTDEGMVQLSGLAKLVELNVDRTVVTDKGSRV 698
Query: 296 LTGLTNLESINLSFTGISDGSLRK--LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
L+ NL+ + LS TG++D LR L L LNL +T+ G+ L L LT L
Sbjct: 699 LSNFANLQILGLSSTGVTDKLLRDGVLNRCKKLCKLNLSRTSVTNRGIKHL-ELNSLTLL 757
Query: 354 DLFGARIT 361
+L R+T
Sbjct: 758 NLDWTRVT 765
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 7/211 (3%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
+ GV D+ + + S SL S+++ + VTD GL HLK L SLD + I+D G++
Sbjct: 592 FTGVTDECLVALNSH-PSLSSLNILQTSVTDRGLQHLKGLP-LSSLDLSDYRNITDSGVQ 649
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
++ G+++LT L N +T +GM +GL LV+L+++R G L L+ L
Sbjct: 650 YIAGMTSLTRL-LLSNTRLTDEGMVQLSGLAKLVELNVDRTVVTDKGSRVLSNFANLQIL 708
Query: 161 NIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ +TD ++ L+ L L +S + VT+ GI +L+ L LTLLNL+ VTA
Sbjct: 709 GLS-STGVTDKLLRDGVLNRCKKLCKLNLSRTSVTNRGIKHLE-LNSLTLLNLDWTRVTA 766
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
C L+ +L L ++ C G E S
Sbjct: 767 DCGLLLTGCPALKALRMSNCTPPSPGDESGS 797
>gi|290985427|ref|XP_002675427.1| predicted protein [Naegleria gruberi]
gi|284089023|gb|EFC42683.1| predicted protein [Naegleria gruberi]
Length = 324
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 155/298 (52%), Gaps = 2/298 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I D + K +S + L SL IS + + D G + +++LT LN+
Sbjct: 24 MKQLISLNI-GKNEIGDEEAKLISEMKQLTSLNISDNLIGDEGAKLISEMKQLTSLNICC 82
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ LS + L LN+ ++ D+G + S+ L LN+GF +I E +
Sbjct: 83 NRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISETRQLTSLNIGFTQIGGEGAKFIS 142
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L SL++ IG EG ++ + L S+N+S I D + ++ + L SLN+
Sbjct: 143 EMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISDNLIGDEGAKLISEMKQLTSLNISN 202
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QI G+ ++ + LT LD+ +I D GA + K L SL I G + D G K +
Sbjct: 203 NQIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLISEMKQLTSLNISGNRIGDEGAKSMS 262
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
++ L L++S N + D+ +LIS + L+SLN+ +RI G+++++ +K L SLT
Sbjct: 263 EMKQLKSLDISYN-QIGDEGTKLISEMKQLISLNIRANRIGDEGVKYIREMKQLTSLT 319
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 160/325 (49%), Gaps = 8/325 (2%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+SG+ + D + + + L SL+ +I D + + + LTSL+ +N
Sbjct: 4 LTSLDISGNGIGDEAKL-ISEMKQLISLNIGKN-EIGDEEAKLISEMKQLTSLNIS-DNL 60
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWC-NCITDSDMKPL 176
I +G K + + L L++ C RI G L + +L SLNI C N I D K +
Sbjct: 61 IGDEGAKLISEMKQLTSLNI-CCNRIGVEGAKYLSEMKQLISLNI--CENEIGDEGAKLI 117
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S L SL I +++ G ++ +++LT L++ + +S + L LN++
Sbjct: 118 SETRQLTSLNIGFTQIGGEGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNIS 177
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ D+G + S++ L LN+ N+I E + + + L SL++ + IGDEG +
Sbjct: 178 DNLIGDEGAKLISEMKQLTSLNISNNQIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLI 237
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ + L S+N+S I D + ++ + LKSL++ QI D G ++ + L L++
Sbjct: 238 SEMKQLTSLNISGNRIGDEGAKSMSEMKQLKSLDISYNQIGDEGTKLISEMKQLISLNIR 297
Query: 357 GARITDSGAAYLRNFKNLRSLEICG 381
RI D G Y+R K L SL G
Sbjct: 298 ANRIGDEGVKYIREMKQLTSLTYKG 322
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 138/275 (50%), Gaps = 8/275 (2%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT L++ G + +S + L LN+ + ++ D+ + S++ L LN+ N
Sbjct: 1 MKQLTSLDISGNGIGDEA-KLISEMKQLISLNIGKNEIGDEEAKLISEMKQLTSLNISDN 59
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
I DE + + L SLN+ IG EG L+ + L S+N+ I D + ++
Sbjct: 60 LIGDEGAKLISEMKQLTSLNICCNRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISE 119
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
L SLN+ QI G ++ + LT LD+ I GA ++ K L SL I
Sbjct: 120 TRQLTSLNIGFTQIGGEGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISDN 179
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ D G K I ++ LT LN+S N + + ++LIS + L SL++SN++I G + +
Sbjct: 180 LIGDEGAKLISEMKQLTSLNISNN-QIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLIS 238
Query: 443 PLKNLRSLTLESCKV------TANDIKRLQSRDLP 471
+K L SL + ++ + +++K+L+S D+
Sbjct: 239 EMKQLTSLNISGNRIGDEGAKSMSEMKQLKSLDIS 273
>gi|168699408|ref|ZP_02731685.1| hypothetical protein GobsU_07802 [Gemmata obscuriglobus UQM 2246]
Length = 320
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 140/238 (58%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N +TD+ MK L+ L NL SL++ VTD+G+ L L+KLT L L VT A + L+
Sbjct: 59 NKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L SL L+L ++D G ++ + + L L+L ++TD L L L NL +L+L S
Sbjct: 119 SLASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGS 178
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+ L L LTNL++++L T ++D L++LA L+SL +L L A ++TD GL LT
Sbjct: 179 TAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLT 238
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L L+ L+L G ++T +G L KNL L++ +TDAG+K + L++L +L L
Sbjct: 239 PLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRL 296
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 1/249 (0%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G+ L L L SL + +TD+ +K L+ L L +LQ++ +KVTD+G+ L L
Sbjct: 64 AGMKELAALRNLTSLKL-IGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELASLAS 122
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT L+L VT A + L+ L L L+L+ +++D G ++ + + +L L+LG +T
Sbjct: 123 LTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGSTAVT 182
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
L L LTNL++L+L + D GL L LT+L ++ L+ T ++D L+ L L +
Sbjct: 183 GASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLKN 242
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L LNL ++T GL L +L LT LDL +TD+G L NL+ L + G +T
Sbjct: 243 LSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVGAKVT 302
Query: 386 DAGVKHIKD 394
GVK KD
Sbjct: 303 TKGVKEFKD 311
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 132/249 (53%), Gaps = 2/249 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D G++ L L NLTSL +T G+KA A L L L L G+ L
Sbjct: 60 KMTDAGMKELAALRNLTSLKL-IGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L +L++ N +TD+ +K L+ LT L +L +S +KVTD+G+ L L+ L L+L
Sbjct: 119 SLASLTTLDLASTN-VTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLG 177
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
VT A L L+ L +L L+L +++D G ++ + + SL L L ++TD L L
Sbjct: 178 STAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGL 237
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
L NL LNL + GL L L NL ++L T ++D L++L L++LK L L
Sbjct: 238 TPLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLV 297
Query: 333 ARQITDTGL 341
++T G+
Sbjct: 298 GAKVTTKGV 306
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
K+TD+G+ L L+ LT L L G VT A L +L+ L L L L +++D G ++ +
Sbjct: 60 KMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELAS 119
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ SL L+L +TD + L LT L +L+L + D GL L L NL +++L T
Sbjct: 120 LASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGST 179
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
++ SL++LA L++LK+L+L + ++TD+G L
Sbjct: 180 AVTGASLKELAPLTNLKTLHL------------------------YDTKMTDAGLKELAP 215
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
+L +L + +TDAG+K + L +L+ LNL +T L+ ++ L L L++
Sbjct: 216 LTSLTTLTLAATKVTDAGLKGLTPLKNLSDLNLG-GTKVTSAGLKELAALKNLTVLDLDV 274
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+ +T AGL+ L PL NL+ L L KVT +K +
Sbjct: 275 TAVTDAGLKELTPLTNLKVLRLVGAKVTTKGVKEFK 310
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 3/235 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L G VTD+GL L L +L +++D G++ L L++LT+L N
Sbjct: 75 LTSLKLIGPVVTDAGLKALAPLKKLTTLQLT-AAKVTDAGVKELASLASLTTLDLASTN- 132
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T G+K A L L LDL GL L L L +L++ +T + +K L+
Sbjct: 133 VTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSL-GSTAVTGASLKELAP 191
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNLK+L + +K+TD+G+ L L LT L L VT A L L+ L +L LNL
Sbjct: 192 LTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLKNLSDLNLGGT 251
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+++ G ++ + + +L VL+L +TD L L LTNL+ L L + +G+
Sbjct: 252 KVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVGAKVTTKGV 306
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 128/232 (55%), Gaps = 4/232 (1%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P V D + +A L ++ L+ + VTD+G+ L ++L +LD ++D G++
Sbjct: 83 PVVTDAGLKALAPL-KKLTTLQLTAAKVTDAGVKELASLASLTTLDLA-STNVTDAGVKE 140
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L L+ LT+L +T G+K A L NLV L L L L L L++L+
Sbjct: 141 LAPLTRLTALDL-SGTKVTDAGLKELAPLKNLVTLSLGSTAVTGASLKELAPLTNLKTLH 199
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ + +TD+ +K L+ LT+L +L ++ +KVTD+G+ L L+ L+ LNL G VT+A L
Sbjct: 200 L-YDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLKNLSDLNLGGTKVTSAGL 258
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
L+AL +L L+L+ ++D G ++ + + +LKVL L ++T + + K
Sbjct: 259 KELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVGAKVTTKGVKEFK 310
>gi|307108381|gb|EFN56621.1| hypothetical protein CHLNCDRAFT_57520 [Chlorella variabilis]
Length = 790
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 143/440 (32%), Positives = 217/440 (49%), Gaps = 47/440 (10%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
V D ++ +A + L ++D++G + VTD +G L L L+ C ++D GLE
Sbjct: 338 VGDGVLEAVA-RCRGLRALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLE 396
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMK 156
L L +L +L+ + +T +G+ +GL L L+L+ C + G L L L +
Sbjct: 397 LLPTLRSLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHR 456
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L SL ++ C+ + D + L GLT+L+ L +S C ++T G+A L L+ L L L+ C
Sbjct: 457 LTSLCMRGCDRLADGALDFLPGLTSLRQLDLSGCKELTADGLAPLSSLRLLACLRLQHCS 516
Query: 216 --VTAACLDSLSALGSLFYLNLNRC------------------QLSDDGCEKF------- 248
AA L LS L SL LNL C QLS +GC
Sbjct: 517 GLRGAAALRPLSTLSSLTALNLGGCTAIHGQSLRALGTLSALRQLSLEGCRGVVLLDAGL 576
Query: 249 ----SKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
+ L LNL G + +TD L + LT L SLNL C + L
Sbjct: 577 EALAPSLHRLTSLNLQGCSTLTDAGLQKMGPLTGLVSLNLSECPSITGAGAAAWRMPLLA 636
Query: 304 SINLSFT-GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-AR 359
S+ L + G+ D L LAGL++L+SLNL +++ D GLAA+ +L LT L L G +
Sbjct: 637 SLQLQNSPGVDDAGLAALAGLTALRSLNLKQCKRVGDGGLAAMAPALQRLTALCLQGMSE 696
Query: 360 ITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+TD+G A L ++L+ LE+ DAG+ + LS+L+ L+L + +TD +L +
Sbjct: 697 VTDAGVAQLGALRSLQDLELQFAWQFGDAGIAALTRLSALSRLDLMYSWKITDDSLRSLG 756
Query: 419 GLTGLVSLNV-SNSRITSAG 437
+T L+SLNV R+T G
Sbjct: 757 RMTSLLSLNVLGCHRLTPGG 776
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 144/495 (29%), Positives = 198/495 (40%), Gaps = 123/495 (24%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
++Q L+ C Q+ D L + LS L +S R +T +G+ A L L +L L
Sbjct: 179 PSVQVLELGHCRQLQDWDLADVALLSTLRCVSLRGCEGVTDEGVAQLARLPRLSRLVLRN 238
Query: 141 CTRIHG-GLVNLKGLMKLE----------------------------------------- 158
C ++ GL L G+ E
Sbjct: 239 CVKLTDVGLARLAGVSGRELPQLWAPAGPGSPPPVPRLRSPGARLPAAAAPPPCRRPPLA 298
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQI---SCSKVTDSG------IAYLKGLQKLTLL 209
SL++ C +T+ + ++ CS+V+ G +A +GL+ L +
Sbjct: 299 SLDLAGCVLLTERGFAAAASGLAASLTELLLGGCSRVSTVGDGVLEAVARCRGLRALDMA 358
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDE 267
G LS L L LNL C L+DDG E + SL LNL ++TD
Sbjct: 359 GCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLELLPTLRSLAALNLQECWQVTDR 418
Query: 268 CLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESI-NLSFTG---ISDGSLRKLAG 322
L HL GLT LE LNL C + + +L+GL L + +L G ++DG+L L G
Sbjct: 419 GLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHRLTSLCMRGCDRLADGALDFLPG 478
Query: 323 LSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL---FGARITDSGAAYLRNFKNLRSL- 377
L+SL+ L+L +++T GLA L+SL L L L G R GAA LR L SL
Sbjct: 479 LTSLRQLDLSGCKELTADGLAPLSSLRLLACLRLQHCSGLR----GAAALRPLSTLSSLT 534
Query: 378 -----------------------------EICGGG-LTDAGVKHI-KDLSSLTLLNLSQN 406
E C G L DAG++ + L LT LNL
Sbjct: 535 ALNLGGCTAIHGQSLRALGTLSALRQLSLEGCRGVVLLDAGLEALAPSLHRLTSLNLQGC 594
Query: 407 CNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLK-PL-------------------- 444
LTD L+ + LTGLVSLN+S IT AG + PL
Sbjct: 595 STLTDAGLQKMGPLTGLVSLNLSECPSITGAGAAAWRMPLLASLQLQNSPGVDDAGLAAL 654
Query: 445 ---KNLRSLTLESCK 456
LRSL L+ CK
Sbjct: 655 AGLTALRSLNLKQCK 669
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 112/421 (26%), Positives = 171/421 (40%), Gaps = 91/421 (21%)
Query: 126 AFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A A ++ L+L C ++ L ++ L L ++++ C +TD + L+ L L
Sbjct: 174 AAASFPSVQVLELGHCRQLQDWDLADVALLSTLRCVSLRGCEGVTDEGVAQLARLPRLSR 233
Query: 185 LQI-SCSKVTDSGIAYLKGLQKLTLLNL-----------------EGCPVTAACLDSLSA 226
L + +C K+TD G+A L G+ L L G + AA
Sbjct: 234 LVLRNCVKLTDVGLARLAGVSGRELPQLWAPAGPGSPPPVPRLRSPGARLPAAAAPPPCR 293
Query: 227 LGSLFYLNLNRCQLSDD--------------------GCEKFSKIG-----------SLK 255
L L+L C L + GC + S +G L+
Sbjct: 294 RPPLASLDLAGCVLLTERGFAAAASGLAASLTELLLGGCSRVSTVGDGVLEAVARCRGLR 353
Query: 256 VLNL-GFNEITDE--CLVHLKGLTNLESLNLDSC-------------------------- 286
L++ G +TDE L L L LNL C
Sbjct: 354 ALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLELLPTLRSLAALNLQECW 413
Query: 287 GIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL-NLDAR---QITDTGL 341
+ D GL +L+GLT LE +NL +++G+ + L+GL +L L +L R ++ D L
Sbjct: 414 QVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHRLTSLCMRGCDRLADGAL 473
Query: 342 AALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSL 398
L LT L LDL G + +T G A L + + L L + C G A ++ + LSSL
Sbjct: 474 DFLPGLTSLRQLDLSGCKELTADGLAPLSSLRLLACLRLQHCSGLRGAAALRPLSTLSSL 533
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR---ITSAGLRHLKP-LKNLRSLTLES 454
T LNL + ++L + L+ L L++ R + AGL L P L L SL L+
Sbjct: 534 TALNLGGCTAIHGQSLRALGTLSALRQLSLEGCRGVVLLDAGLEALAPSLHRLTSLNLQG 593
Query: 455 C 455
C
Sbjct: 594 C 594
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 336 ITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAY--LRNFKNLRSLEICG-GGLTDAGVKH 391
+ D L A+ GL LD+ G +TD G + L + L L + G L D G++
Sbjct: 338 VGDGVLEAVARCRGLRALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLEL 397
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG----LRHLKPLKNL 447
+ L SL LNL + +TD+ L +SGLT L LN+ R + G L L L L
Sbjct: 398 LPTLRSLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHRL 457
Query: 448 RSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
SL + C A+ LP L S R
Sbjct: 458 TSLCMRGCDRLADGALDF----LPGLTSLR 483
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
L Q V D + +A L ++ L G S+VTD+G+ L +LQ L+ F Q D
Sbjct: 665 LKQCKRVGDGGLAAMAPALQRLTALCLQGMSEVTDAGVAQLGALRSLQDLELQFAWQFGD 724
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
G+ L LS L+ L + IT +++ + +L+ L++ C R+ G
Sbjct: 725 AGIAALTRLSALSRLDLMYSWKITDDSLRSLGRMTSLLSLNVLGCHRLTPG 775
>gi|149177419|ref|ZP_01856023.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148843752|gb|EDL58111.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 375
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 151/285 (52%), Gaps = 4/285 (1%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+K+ D+ + + GL L L L P+T A L+S+ + +L L+L C L++ +
Sbjct: 82 TKIDDAALKEIAGLSHLRSLLLNETPITDAALESVGKVTTLENLDLRNCSLNNKAISYLT 141
Query: 250 KIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
+ LK L L G ++I D+ + + LTNL++L LD + +GL L L LE + L+
Sbjct: 142 GLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLNKLEELYLA 201
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-GARITDSGAAY 367
T + D L L LK L QI+D GLA + L +DL + ++D+G +
Sbjct: 202 KTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSLLSDAGMKH 261
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L L+ L + GLTDAGV+ ++ L+SL LNL N LT+ L+ + + L L+
Sbjct: 262 LSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLD-NTRLTNAGLKYLKDMQKLEFLH 320
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
+ ++ ++ GL+HL+PL +L+ L L VT + L+ + LPN
Sbjct: 321 LGSTAVSDEGLKHLEPLTSLKELKLTRTAVTEKGVAELKKK-LPN 364
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 155/296 (52%), Gaps = 5/296 (1%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
+DF +I D L+ + GLS+L SL IT +++ + L LDL C+
Sbjct: 76 EVDFR-GTKIDDAALKEIAGLSHLRSL-LLNETPITDAALESVGKVTTLENLDLRNCSLN 133
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+ + L GL KL++L + + I D M ++ LTNLK+L + V+ G++ LK L
Sbjct: 134 NKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLN 193
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
KL L L V L +L+ L L++ Q+SD+G F+KI L+ ++L N +
Sbjct: 194 KLEELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSL 253
Query: 265 -TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
+D + HL GL L+ LNL G+ D G+ L GLT+LE +NL T +++ L+ L +
Sbjct: 254 LSDAGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYLKDM 313
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L+ L+L + ++D GL L LT L L L +T+ G A L+ K L + EI
Sbjct: 314 QKLEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTAVTEKGVAELK--KKLPNTEI 367
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 136/271 (50%), Gaps = 4/271 (1%)
Query: 140 RCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
R T+I L + GL L SL + ITD+ ++ + +T L++L + + + I+
Sbjct: 80 RGTKIDDAALKEIAGLSHLRSLLLNET-PITDAALESVGKVTTLENLDLRNCSLNNKAIS 138
Query: 199 YLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
YL GL KL L L G + + ++ L +L L L+ +S DG + + L+ L
Sbjct: 139 YLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLNKLEEL 198
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI-SDGS 316
L + D+ L L L+ L I DEGL + LE I+LS + SD
Sbjct: 199 YLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSLLSDAG 258
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
++ L+GL LK LNL +TD G+ L LT L L+L R+T++G YL++ + L
Sbjct: 259 MKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYLKDMQKLEF 318
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L + ++D G+KH++ L+SL L L++
Sbjct: 319 LHLGSTAVSDEGLKHLEPLTSLKELKLTRTA 349
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 147/295 (49%), Gaps = 17/295 (5%)
Query: 28 FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 87
FR + D L + G+ S L S+ L+ + +TD+ L + + L++LD
Sbjct: 79 FRGTKIDDAALKEIAGL------------SHLRSLLLNETPITDAALESVGKVTTLENLD 126
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
C +++ + +L GLS L +L N+ I M L NL L L+ G
Sbjct: 127 LRNC-SLNNKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDG 185
Query: 148 LVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
L LK L KLE L + + D D + L+ LK ++S ++++D G+A + +L
Sbjct: 186 LSQLKDLNKLEELYL--AKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQL 243
Query: 207 TLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
++L E ++ A + LS LG L LNL R L+D G E + SL+ LNL +T
Sbjct: 244 EEIDLSENSLLSDAGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLT 303
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
+ L +LK + LE L+L S + DEGL +L LT+L+ + L+ T +++ + +L
Sbjct: 304 NAGLKYLKDMQKLEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTAVTEKGVAEL 358
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 129/266 (48%), Gaps = 27/266 (10%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G + ++ ++ D ++ + + L+ L L ITD L + +T LE+L+L +C
Sbjct: 72 GYVIEVDFRGTKIDDAALKEIAGLSHLRSLLLNETPITDAALESVGKVTTLENLDLRNCS 131
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTS 346
+ ++ + LTGL+ L+++ LS D L++LK+L LD ++ GL+ L
Sbjct: 132 LNNKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKD 191
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSL-----EICGGG------------------ 383
L L L L + D G A L F L+ +I G
Sbjct: 192 LNKLEELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSEN 251
Query: 384 --LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
L+DAG+KH+ L L LNL + LTD +E + GLT L LN+ N+R+T+AGL++L
Sbjct: 252 SLLSDAGMKHLSGLGKLKKLNLWR-VGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYL 310
Query: 442 KPLKNLRSLTLESCKVTANDIKRLQS 467
K ++ L L L S V+ +K L+
Sbjct: 311 KDMQKLEFLHLGSTAVSDEGLKHLEP 336
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+Q L LS + ++D GL L+ +D + +SD G++HL GL L L+
Sbjct: 214 TQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSLLSDAGMKHLSGLGKLKKLNL 273
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
R +T G++ GL +L L+L+ + GL LK + KLE L++ ++D +
Sbjct: 274 WR-VGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYLKDMQKLEFLHLG-STAVSDEGL 331
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLK 201
K L LT+LK L+++ + VT+ G+A LK
Sbjct: 332 KHLEPLTSLKELKLTRTAVTEKGVAELK 359
>gi|149175887|ref|ZP_01854505.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148845334|gb|EDL59679.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 360
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 142/280 (50%), Gaps = 4/280 (1%)
Query: 164 WCNCI-TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
W N I + D + ++S+ + ++ DS + +L L ++L G ++ L
Sbjct: 73 WENVIRQNRDKNQMKSFDEVESISLDVTQ--DSDLVWLNDFPNLERISLSGKGLSNTGLV 130
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L L L L +SDDG ++ L L+L + ++ L HL+GLTNL LN
Sbjct: 131 HLKRFHRLKRLMLWNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGLTNLTWLN 190
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L + + GL + + L +NL+ T ISD L L L L L L+ Q+T TGL+
Sbjct: 191 LQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTGTGLS 250
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
L+SL L L L G+ I DS ++L++FK L LE+ ++DAG+ H+ L L LN
Sbjct: 251 ELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALN 310
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
LS +TD L + GL L ++ + N+++TS GL K
Sbjct: 311 LS-GTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGLEQRK 349
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 128/258 (49%), Gaps = 27/258 (10%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ LSG ++++GL+HLK L+ L + +SD GL HL+ LS L
Sbjct: 117 ISLSGKGLSNTGLVHLKRFHRLKRLML-WNTSVSDDGLVHLKELSQLN------------ 163
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
LDL GL +L+GL L LN++ +T++ +K ++ +
Sbjct: 164 -------------HLDLFYTPVSGSGLAHLQGLTNLTWLNLQ-GTAVTNAGLKQVNCFSA 209
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L+ L ++ + ++D+G+ +L+ L +L +L LE VT L LS+L L+ L LN ++
Sbjct: 210 LRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCLKLNGSLIN 269
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
D +L L L +I+D LVHL GL L++LNL + D GLV L GL
Sbjct: 270 DSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGLVYLQGLPR 329
Query: 302 LESINLSFTGISDGSLRK 319
L+++ L T ++ L +
Sbjct: 330 LKNVYLKNTQVTSEGLEQ 347
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 3/191 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +DL + V+ SGL HL+ +NL L+ +++ GL+ + S L L+ +
Sbjct: 160 SQLNHLDLFYTPVSGSGLAHLQGLTNLTWLNLQ-GTAVTNAGLKQVNCFSALRVLNLNQ- 217
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+I+ G+ L L+ L LE+ GL L L KL L + + I DS M L
Sbjct: 218 TSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCLKLN-GSLINDSSMSHL 276
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L++ ++++D+G+ +L GL L LNL G VT A L L L L + L
Sbjct: 277 KSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGLVYLQGLPRLKNVYLK 336
Query: 237 RCQLSDDGCEK 247
Q++ +G E+
Sbjct: 337 NTQVTSEGLEQ 347
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L ++L+ + ++D+GL+HL+D L L Q++ GL L L L L
Sbjct: 208 SALRVLNLNQTSISDAGLVHLRDLPQLIILQLE-QTQVTGTGLSELSSLPKLYCLKL-NG 265
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ I M L++L+L+ GLV+L GL L++LN+ +TD+ + L
Sbjct: 266 SLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLS-GTQVTDAGLVYL 324
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
GL LK++ + ++VT G+ K
Sbjct: 325 QGLPRLKNVYLKNTQVTSEGLEQRK 349
>gi|329906145|ref|ZP_08274368.1| hypothetical protein IMCC9480_2835 [Oxalobacteraceae bacterium
IMCC9480]
gi|327547327|gb|EGF32161.1| hypothetical protein IMCC9480_2835 [Oxalobacteraceae bacterium
IMCC9480]
Length = 518
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 212/460 (46%), Gaps = 84/460 (18%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG------------LE---- 100
S+ ++LSG + +TD+GL HL +L+ +D CIQ++D G LE
Sbjct: 43 SVRRLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQ 102
Query: 101 ------HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKG 153
L + L L+ +R IT ++A A NL L++ R L +L+
Sbjct: 103 RDASGAALAQMPQLRHLTLQRCQGITPAALEAVANQANLQHLEISLRRNMTDDELASLRP 162
Query: 154 LMKLESLNIK------------W-------------CNCITDSDMKPLSGLTNLKSLQI- 187
L++L L++ W C I ++++ L+ L +L+ L +
Sbjct: 163 LLQLRHLSLNGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLS 222
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
SC ++TD+G+A+L L L+L GC VT A L LSAL SL +L+++ C+L
Sbjct: 223 SCQQLTDAGVAHLPLASTLQHLDLSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVTGA-- 280
Query: 247 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN-LTGLTNLE 303
+K LN GF +D L + G+ +L+ L + C + + L L LT L+
Sbjct: 281 TLGDFAVMKSLNAGFCRRFSDAGLAAVAGMHDLQQLEITHCVALTRDALATCLPQLTQLQ 340
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR--I 360
++N S T +SD L+ L SL+ L L R +T+ GLA L + L LDL R +
Sbjct: 341 TLNASGTPLSDAPLQALFAQGSLQQLVLQHCRALTEPGLAQLATSPALVSLDLRSCRGVV 400
Query: 361 TDSGAAY---------------------LRNFKN---LRSLEICG-GGLTDAGVKHIKDL 395
D+ A LR+F++ L++L + G G + DAG+ H++ L
Sbjct: 401 GDALPALGRQTALETLDLSRCSGVTGDDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQAL 460
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
+L L+L+ LTD L I+ L L++ N + S
Sbjct: 461 PALKTLDLTDCGYLTDGALRRIAHFPALEKLHIRNCHLIS 500
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 157/310 (50%), Gaps = 34/310 (10%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
Q +L +DL+ + + ++ L+HL +LQ L+ + C Q++D G+ HL S L L
Sbjct: 186 PQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLSSCQQLTDAGVAHLPLASTLQHLD 245
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+T G++ + L +L LD+ C + G + +MK SLN +C +D+
Sbjct: 246 LSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVTGATLGDFAVMK--SLNAGFCRRFSDAG 303
Query: 173 MKPLSGLTNLKSLQIS-CSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ ++G+ +L+ L+I+ C +T +A L L +L LN G P++ A L +L A GSL
Sbjct: 304 LAAVAGMHDLQQLEITHCVALTRDALATCLPQLTQLQTLNASGTPLSDAPLQALFAQGSL 363
Query: 231 FYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF--------------------------NE 263
L L C+ L++ G + + +L L+L +
Sbjct: 364 QQLVLQHCRALTEPGLAQLATSPALVSLDLRSCRGVVGDALPALGRQTALETLDLSRCSG 423
Query: 264 ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTG-ISDGSLRKLA 321
+T + L H + L+ L++L L CG I D GL +L L L++++L+ G ++DG+LR++A
Sbjct: 424 VTGDDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQALPALKTLDLTDCGYLTDGALRRIA 483
Query: 322 GLSSLKSLNL 331
+L+ L++
Sbjct: 484 HFPALEKLHI 493
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 183/353 (51%), Gaps = 18/353 (5%)
Query: 135 KLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-V 192
+L+L TR+ GL +L GL+ LE ++++ C +TD+ + L+ L L +L+++ +
Sbjct: 46 RLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQRDA 105
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKI 251
+ + +A + L+ LTL +G +T A L++++ +L +L ++ R ++DD +
Sbjct: 106 SGAALAQMPQLRHLTLQRCQG--ITPAALEAVANQANLQHLEISLRRNMTDDELASLRPL 163
Query: 252 GSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSF 309
L+ L+L + L + L+ L+L +C I + LV+L L +L+ +NLS
Sbjct: 164 LQLRHLSLNGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLSS 223
Query: 310 -TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
++D + L S+L+ L+L +Q+TD GL L++L L HLD+ R+ A
Sbjct: 224 CQQLTDAGVAHLPLASTLQHLDLSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVT--GAT 281
Query: 368 LRNFKNLRSLE--ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL-ISGLTGLV 424
L +F ++SL C +DAG+ + + L L ++ LT L + LT L
Sbjct: 282 LGDFAVMKSLNAGFCRR-FSDAGLAAVAGMHDLQQLEITHCVALTRDALATCLPQLTQLQ 340
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSRDLPNLVSF 476
+LN S + ++ A L+ L +L+ L L+ C+ +T + +L + P LVS
Sbjct: 341 TLNASGTPLSDAPLQALFAQGSLQQLVLQHCRALTEPGLAQLATS--PALVSL 391
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 107/237 (45%), Gaps = 33/237 (13%)
Query: 253 SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFT 310
S++ L L G +TD L HL GL +LE ++L SC + D GL L L L ++ L+
Sbjct: 43 SVRRLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQ 102
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL 368
D S LA + L+ L L Q IT L A+ + L HL++ R +TD A L
Sbjct: 103 --RDASGAALAQMPQLRHLTLQRCQGITPAALEAVANQANLQHLEISLRRNMTDDELASL 160
Query: 369 RNFKNLRSLEI--------------------------CGGGLTDAGVKHIKDLSSLTLLN 402
R LR L + + +A + H+ L L LN
Sbjct: 161 RPLLQLRHLSLNGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLN 220
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 458
LS LTD + + + L L++S ++T AGLR L L++L+ L + SC++
Sbjct: 221 LSSCQQLTDAGVAHLPLASTLQHLDLSGCQQVTDAGLRGLSALRSLQHLDVHSCRLV 277
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 6 ISQQIFNELVYSRC--LTEVSLEAFR-DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
+Q +LV C LTE L AL L L GV + + Q ++L ++
Sbjct: 358 FAQGSLQQLVLQHCRALTEPGLAQLATSPALVSLDLRSCRGVVGDALPALGRQ-TALETL 416
Query: 63 DLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
DLS S VT L H + S LQ+L C +I+D GL HL+ L L +L +T
Sbjct: 417 DLSRCSGVTGDDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQALPALKTLDLTDCGYLTD 476
Query: 122 QGMKAFAGLINLVKLDLERCTRI 144
++ A L KL + C I
Sbjct: 477 GALRRIAHFPALEKLHIRNCHLI 499
>gi|290970865|ref|XP_002668286.1| predicted protein [Naegleria gruberi]
gi|284081599|gb|EFC35542.1| predicted protein [Naegleria gruberi]
Length = 368
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 180/359 (50%), Gaps = 5/359 (1%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ DK I S+ L S+D+ + + D G+ + + L SL+ + +I D G++ +
Sbjct: 14 IGDKEAKFI-SEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNI-YNNRIGDEGVKSII 71
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+ LTSL N I +G+K + + L L++ + + +L SLNI
Sbjct: 72 EMKQLTSLDIG-GNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISEMKQLTSLNI- 129
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N I D +K + + LKSL I ++++ G ++ +++L LN+ + S
Sbjct: 130 YNNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNNRIDEGV-KS 188
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L LN+ ++ D + S++ L L++ N I DE + + + L SLN+
Sbjct: 189 ISEMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNI 248
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+ IGDEG+ ++ + L S+++ I D ++ ++ + L SL++ +I D G+ +
Sbjct: 249 YNNRIGDEGVKSIIEMKRLTSLDIGRNRIGDEGVKFISEMKQLASLDISENRIGDEGVKS 308
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
++ + LT L++ RI D GA + K L+SL+I G + D GVK I ++ L LN
Sbjct: 309 ISEMKQLTSLNISENRIGDEGAKSISEMKRLKSLDIGGNQIGDEGVKFISEMKQLASLN 367
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 192/393 (48%), Gaps = 31/393 (7%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ +SG+ + D + + L SLD + +I D G++ + + L SL+ NN
Sbjct: 4 LTSLIISGNQIGDKEAKFISEMKQLTSLDI-YNNRIGDEGVKSISEMKQLVSLNIY-NNR 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G+K+ + L LD+ RI G+ + + +L SLNI N I D + +S
Sbjct: 62 IGDEGVKSIIEMKQLTSLDI-GGNRIGDEGVKFISEMKQLTSLNISE-NQIGDKEATFIS 119
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ L SL I +++ D G+ + +++L L++ ++ +S + L LN+
Sbjct: 120 EMKQLTSLNIYNNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYN 179
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++ D+G + S++ L LN+ N I D+ + + L SL++ + IGDEG +
Sbjct: 180 NRI-DEGVKSISEMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIYNNRIGDEGAI--- 235
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
F ++ + L SLN+ +I D G+ ++ + LT LD+
Sbjct: 236 -----------F----------ISKMKQLTSLNIYNNRIGDEGVKSIIEMKRLTSLDIGR 274
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
RI D G ++ K L SL+I + D GVK I ++ LT LN+S+N + D+ + I
Sbjct: 275 NRIGDEGVKFISEMKQLASLDISENRIGDEGVKSISEMKQLTSLNISEN-RIGDEGAKSI 333
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
S + L SL++ ++I G++ + +K L SL
Sbjct: 334 SEMKRLKSLDIGGNQIGDEGVKFISEMKQLASL 366
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 166/345 (48%), Gaps = 54/345 (15%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL IS +++ D ++ +++LT L++ + + S+S + L LN+
Sbjct: 1 MKQLTSLIISGNQIGDKEAKFISEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNIYNN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTNLE---------------- 279
++ D+G + ++ L L++G N I DE + +K LT+L
Sbjct: 61 RIGDEGVKSIIEMKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISE 120
Query: 280 -----SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS--------------------- 313
SLN+ + IGDEG+ ++ + L+S+++ IS
Sbjct: 121 MKQLTSLNIYNNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNN 180
Query: 314 --DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
D ++ ++ + L SLN+ +I D ++ + LT LD++ RI D GA ++
Sbjct: 181 RIDEGVKSISEMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFISKM 240
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
K L SL I + D GVK I ++ LT L++ +N + D+ ++ IS + L SL++S +
Sbjct: 241 KQLTSLNIYNNRIGDEGVKSIIEMKRLTSLDIGRN-RIGDEGVKFISEMKQLASLDISEN 299
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKV------TANDIKRLQSRDL 470
RI G++ + +K L SL + ++ + +++KRL+S D+
Sbjct: 300 RIGDEGVKSISEMKQLTSLNISENRIGDEGAKSISEMKRLKSLDI 344
>gi|421611905|ref|ZP_16053033.1| hypothetical protein RBSH_02839 [Rhodopirellula baltica SH28]
gi|408497310|gb|EKK01841.1| hypothetical protein RBSH_02839 [Rhodopirellula baltica SH28]
Length = 455
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 152/315 (48%), Gaps = 29/315 (9%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
PG++D M+ + S L + L+ + +TD L ++Q L F ++D GLE
Sbjct: 118 PGIDDAGMENLTSL-PKLKYLTLADTAITDETLKTAGKLDSVQGL-FLRRTGVTDEGLEL 175
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS L ++ R +N I GM + A + L + LE+ GLV L L L+S+N
Sbjct: 176 LTGLSKLRAIDLRNSN-IGDAGMDSLAKIKTLADVQLEKSKVTDEGLVKLTSL-PLKSIN 233
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-- 219
+C I MK L L++LQ SK+ D +A LKGL KL L + GC VT
Sbjct: 234 FNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGI 293
Query: 220 ----------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKV 256
L +S L ++ Y++++ C+L S +G + ++ L
Sbjct: 294 QHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGELTGLTY 353
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316
L L + DE L L NLE LNL S + DE L L + L+++N++ T + D S
Sbjct: 354 LGLWETKTNDETLSGFGDLINLEELNLKSTSVTDESLPVLMKMIKLKTLNVAGTQLGDDS 413
Query: 317 LRKLAGLSSLKSLNL 331
+LA L +LKS+N+
Sbjct: 414 FLELAKLPNLKSMNV 428
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 165/353 (46%), Gaps = 5/353 (1%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
N+ S + ++ +G+ N K G+ NL L KL+ L +
Sbjct: 84 NVVEFSIANQKGGIEESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADT- 142
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
ITD +K L +++ L + + VTD G+ L GL KL ++L + A +DSL+
Sbjct: 143 AITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAK 202
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
+ +L + L + +++D+G K + + LK +N + I + L LE+L D
Sbjct: 203 IKTLADVQLEKSKVTDEGLVKLTSL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDY 261
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
I DE + L GL+ L+ + + ++ ++ +AG +L L + D GL ++
Sbjct: 262 SKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVIS 321
Query: 346 SLTGLTHLDLFGARI-TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
L +T++D+ R+ + G A L L L + D + DL +L LNL
Sbjct: 322 QLPAVTYVDISECRLASPEGIAQLGELTGLTYLGLWETKTNDETLSGFGDLINLEELNL- 380
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
++ ++TD++L ++ + L +LNV+ +++ L L NL+S+ + + +
Sbjct: 381 KSTSVTDESLPVLMKMIKLKTLNVAGTQLGDDSFLELAKLPNLKSMNVANTSI 433
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 142/291 (48%), Gaps = 4/291 (1%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ ++ LSG+ N + + D+G+ L L KL L L +T L + L S
Sbjct: 98 EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 157
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ L L R ++D+G E + + L+ ++L + I D + L + L + L+ +
Sbjct: 158 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVT 217
Query: 290 DEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
DEGLV LT L L+SIN ++ T I+ +++ L +L++L D +I D +A L L+
Sbjct: 218 DEGLVKLTSLP-LKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLS 276
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L + G +T G ++ K L E+ + D G+K I L ++T +++S+ C
Sbjct: 277 KLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISE-CR 335
Query: 409 L-TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L + + + + LTGL L + ++ L L NL L L+S VT
Sbjct: 336 LASPEGIAQLGELTGLTYLGLWETKTNDETLSGFGDLINLEELNLKSTSVT 386
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 97/200 (48%), Gaps = 1/200 (0%)
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
+E L HL G+ N + GI D G+ NLT L L+ + L+ T I+D +L+ L S
Sbjct: 98 EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 157
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
++ L L +TD GL LT L+ L +DL + I D+G L K L +++ +T
Sbjct: 158 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVT 217
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
D G+ + L L +N + + T++++ L +L S+I + LK L
Sbjct: 218 DEGLVKLTSL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLS 276
Query: 446 NLRSLTLESCKVTANDIKRL 465
L+ L + C VT I+ +
Sbjct: 277 KLKRLRIRGCDVTGEGIQHI 296
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
L L+ + T G I D+G L + L+ L + +TD +K L S+
Sbjct: 101 LQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDSVQG 160
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L L + +TD+ LEL++GL+ L ++++ NS I AG+ L +K L + LE KVT
Sbjct: 161 LFL-RRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVTDE 219
Query: 461 DIKRLQS 467
+ +L S
Sbjct: 220 GLVKLTS 226
>gi|290991306|ref|XP_002678276.1| predicted protein [Naegleria gruberi]
gi|284091888|gb|EFC45532.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 152/299 (50%), Gaps = 2/299 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I D K + + L SL I +++ D GI + +++LTLL++ G
Sbjct: 100 MKQLTSLNIS-NNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLLDISG 158
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + +S + L LN+ ++ G + ++ L L++ +NEI DE +
Sbjct: 159 NSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSIS 218
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L L SL + IGDEG+ ++ + L +++S I D ++ ++ + L SLN+
Sbjct: 219 ELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNIYN 278
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+I G + + LT LD+ I D GA + K L SL I G + D G+K I
Sbjct: 279 NEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGDEGIKLIS 338
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
++ LTLL++S ++ DK ++ IS + L SL + + I AG + + +K L SL +
Sbjct: 339 EMKQLTLLDIS-GKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLTSLDI 396
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 174/349 (49%), Gaps = 3/349 (0%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LTSL+ NN I + K+ + L LD+ G+ + + +L L+I
Sbjct: 100 MKQLTSLNIS-NNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLLDIS- 157
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I D +KP+S + L SL I +++ +G ++ +++LT L++ + S+
Sbjct: 158 GNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSI 217
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S L L L ++ Q+ D+G + S++ L +L++ N I D+ + + + L SLN+
Sbjct: 218 SELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNIY 277
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ IG G + + L S+++S+ I D + ++ + L SL + QI D G+ +
Sbjct: 278 NNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGDEGIKLI 337
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
+ + LT LD+ G + D G + K L SL I + AG K I ++ LT L++S
Sbjct: 338 SEMKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLTSLDIS 397
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
N + D+ + IS L L L++S + I G + + +K L+SL ++
Sbjct: 398 YN-EIGDEGAKSISELKQLTLLDISGNGIGDEGSKFIIGMKQLKSLDIQ 445
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 157/345 (45%), Gaps = 27/345 (7%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+ G+ + D G+ + + L LD + I D G++ + + LTSL+ NN
Sbjct: 127 LTSLDIGGNQIGDEGIKLISEMKQLTLLDISGN-SIGDKGVKPISKMKQLTSLNI-YNNE 184
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I G K + L LD+ N I D K +S
Sbjct: 185 IGVAGSKFIIEMKQLTSLDIS-------------------------YNEIGDEGAKSISE 219
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L L SL +S +++ D GI + +++LTLL++ G + + +S + L LN+
Sbjct: 220 LKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNIYNN 279
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ G + ++ L L++ +NEI DE + + L SL + IGDEG+ ++
Sbjct: 280 EIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGDEGIKLISE 339
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L +++S + D ++ ++ + L SL + +I G ++ + LT LD+
Sbjct: 340 MKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLTSLDISYN 399
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
I D GA + K L L+I G G+ D G K I + L L++
Sbjct: 400 EIGDEGAKSISELKQLTLLDISGNGIGDEGSKFIIGMKQLKSLDI 444
>gi|149174591|ref|ZP_01853217.1| hypothetical protein PM8797T_09969 [Planctomyces maris DSM 8797]
gi|148846701|gb|EDL61038.1| hypothetical protein PM8797T_09969 [Planctomyces maris DSM 8797]
Length = 346
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 123/243 (50%), Gaps = 8/243 (3%)
Query: 161 NIKWCNCI--------TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
N+ W + + T++D+ ++ L +LK L S S +TDS ++Y +GL L L LE
Sbjct: 87 NVTWISSVGYGDDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILE 146
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ A L L L L L L ++D G + L LNL +I+D L+HL
Sbjct: 147 RTSIGDAGLYHLRDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHL 206
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
KG+ NL++L LD+ + D GL+ L L LE+++L ++D L L+ +LK L L
Sbjct: 207 KGMLNLQTLYLDATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLA 266
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
QI+D GL L L L LD+ +D+G +L+ K+L L +TDAG +
Sbjct: 267 DTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRL 326
Query: 393 KDL 395
+
Sbjct: 327 HEF 329
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 2/225 (0%)
Query: 149 VNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+L + +L+SL I + ITDSDM GL NL++L + + + D+G+ +L+ L+KL
Sbjct: 105 ADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHLRDLRKL 164
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+L L VT L L L L YLNL+ ++SD G + +L+ L L +++D
Sbjct: 165 KVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLDATQVSD 224
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L++LK L LE+L+L + D GLV+L+ NL+ + L+ T ISD L L L L
Sbjct: 225 RGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQISDQGLVYLGKLKEL 284
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
L++ +D GL L L L +L+ +ITD+G L F
Sbjct: 285 HELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRLHEF 329
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 125/236 (52%), Gaps = 2/236 (0%)
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ ++ +++ SLK+L+ + ITD + + +GL NLE+L L+ IGD GL +L
Sbjct: 100 YEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHLR 159
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L L+ + L T ++D L L L+ L LNL +I+D GL L + L L L
Sbjct: 160 DLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLDA 219
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+++D G YL+ L +L++ +TDAG+ H+ + +L L L+ + ++D+ L +
Sbjct: 220 TQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLA-DTQISDQGLVYL 278
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
L L L++ + + AGL HL+ LK+L L ES K+T RL LP L
Sbjct: 279 GKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRLHEF-LPKL 333
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 127/258 (49%), Gaps = 30/258 (11%)
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
D+ F ++ L + L +L L F ++ IT M F GL NL L LER +
Sbjct: 99 DYEF----TEADLAAIAQLKSLKILDFS-SSLITDSDMSYFQGLYNLEALILERTSIGDA 153
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
GL +L+ L KL+ L + W +TD + L LT L L +S +K++D+G+ +LKG
Sbjct: 154 GLYHLRDLRKLKVLRL-WETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKG---- 208
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+LNL+ L L+ Q+SD G ++ L+ L+L E+TD
Sbjct: 209 -MLNLQT-------------------LYLDATQVSDRGLIYLKELPKLETLDLLDAEVTD 248
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
LVHL NL+ L L I D+GLV L L L +++ +T SD L L GL SL
Sbjct: 249 AGLVHLSECRNLKKLTLADTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSL 308
Query: 327 KSLNLDARQITDTGLAAL 344
LN ++ +ITD G L
Sbjct: 309 AYLNWESTKITDAGYTRL 326
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 112/243 (46%), Gaps = 27/243 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+Q SL +D S S +TDS + + + NL++L I D GL HLR L L L
Sbjct: 111 AQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERT-SIGDAGLYHLRDLRKLKVLRL 169
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ +T G+ L L L+L GL++LKG++
Sbjct: 170 WETD-VTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGML------------------ 210
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
NL++L + ++V+D G+ YLK L KL L+L VT A L LS +L L
Sbjct: 211 -------NLQTLYLDATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKL 263
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L Q+SD G K+ L L++ + +D LVHL+GL +L LN +S I D G
Sbjct: 264 TLADTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGY 323
Query: 294 VNL 296
L
Sbjct: 324 TRL 326
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
D + T+ LAA+ L L LD + ITDS +Y + NL +L + + DAG+ H
Sbjct: 98 DDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYH 157
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
++DL L +L L + ++TD L + LT L LN+S ++I+ AGL HLK + NL++L
Sbjct: 158 LRDLRKLKVLRLWE-TDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLY 216
Query: 452 LESCKVTANDIKRLQSRDLPNL 473
L++ +V+ + L ++LP L
Sbjct: 217 LDATQVSDRGLIYL--KELPKL 236
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++DL ++VTD+GL+HL +C NL+ L QISD GL +L L L L R N
Sbjct: 238 TLDLLDAEVTDAGLVHLSECRNLKKLTLA-DTQISDQGLVYLGKLKELHELDIRYTNTSD 296
Query: 121 AQGMKAFAGLINLVKLDLERC-------TRIHGGLVNLKGLMKLESLNIK 163
A G+ GL +L L+ E TR+H L L + ++ K
Sbjct: 297 A-GLVHLQGLKSLAYLNWESTKITDAGYTRLHEFLPKLSRTQQFPTIIFK 345
>gi|449132603|ref|ZP_21768618.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
gi|448888282|gb|EMB18604.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
Length = 455
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 152/315 (48%), Gaps = 29/315 (9%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
PG++D M+ + S + L + LS + +TD + + L+ L F ++D GLE
Sbjct: 118 PGIDDAGMENLTSL-TKLERLILSDTAITDRTIETAGKMNTLEVL-FLRRTGVTDEGLEL 175
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS L ++ R N I GM A + L + LE+ GLV L L L+ +N
Sbjct: 176 LTGLSKLRAIDLRNTN-IGDAGMDPLAKIKTLADVQLEKSKVTDEGLVKLAPL-PLKYIN 233
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-- 219
+C I MK L L+ LQ SK+ D+ +A LKGL KLT L + GC VT
Sbjct: 234 FNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLSKLTHLRIRGCDVTGEGI 293
Query: 220 ----------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKV 256
L+ +S L ++ +++++ C+L S +G + K+ L
Sbjct: 294 KHIANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISECRLASPEGIAQLGKLTGLTY 353
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316
L L + D L L NLE LNL S + D+ L L +T L+++N++ T + D S
Sbjct: 354 LGLWETKTNDATLEAFGELVNLEELNLKSTSVTDQSLPVLMKMTKLKTLNVAGTQLGDDS 413
Query: 317 LRKLAGLSSLKSLNL 331
+LA L +LKS+N+
Sbjct: 414 FLELAKLPNLKSMNV 428
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 143/291 (49%), Gaps = 4/291 (1%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ M+ LSG+ N + + D+G+ L L KL L L +T +++ + +
Sbjct: 98 EESMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERLILSDTAITDRTIETAGKMNT 157
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L L L R ++D+G E + + L+ ++L I D + L + L + L+ +
Sbjct: 158 LEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDPLAKIKTLADVQLEKSKVT 217
Query: 290 DEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
DEGLV L L L+ IN ++ T I+ +++ L +L+ L D +I D +A L L+
Sbjct: 218 DEGLVKLAPLP-LKYINFNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLS 276
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
LTHL + G +T G ++ N K L E+ + D G++ I L ++T +++S+ C
Sbjct: 277 KLTHLRIRGCDVTGEGIKHIANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISE-CR 335
Query: 409 L-TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L + + + + LTGL L + ++ A L L NL L L+S VT
Sbjct: 336 LASPEGIAQLGKLTGLTYLGLWETKTNDATLEAFGELVNLEELNLKSTSVT 386
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 162/353 (45%), Gaps = 5/353 (1%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
N+ S + M+ +G+ N + G+ NL L KLE L I
Sbjct: 84 NVVEFSIANQKGGIEESMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERL-ILSDT 142
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
ITD ++ + L+ L + + VTD G+ L GL KL ++L + A +D L+
Sbjct: 143 AITDRTIETAGKMNTLEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDPLAK 202
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
+ +L + L + +++D+G K + + LK +N + I + L LE L D
Sbjct: 203 IKTLADVQLEKSKVTDEGLVKLAPL-PLKYINFNYCTTINGPTMKMLGQTPTLERLQGDY 261
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
I D + L GL+ L + + ++ ++ +A +L L + D GL ++
Sbjct: 262 SKINDASMAELKGLSKLTHLRIRGCDVTGEGIKHIANNKALAKFELRDSSVDDKGLEVIS 321
Query: 346 SLTGLTHLDLFGARI-TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
L +TH+D+ R+ + G A L L L + DA ++ +L +L LNL
Sbjct: 322 QLPAVTHVDISECRLASPEGIAQLGKLTGLTYLGLWETKTNDATLEAFGELVNLEELNL- 380
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
++ ++TD++L ++ +T L +LNV+ +++ L L NL+S+ + + +
Sbjct: 381 KSTSVTDQSLPVLMKMTKLKTLNVAGTQLGDDSFLELAKLPNLKSMNVANTSI 433
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 96/365 (26%), Positives = 162/365 (44%), Gaps = 31/365 (8%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
+ + HL N FN I D G+E+L L+ L L + AIT + ++ +
Sbjct: 98 EESMQHLSGIPNTLIATFN-GPGIDDAGMENLTSLTKLERLILS-DTAITDRTIETAGKM 155
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
L L L R GL L GL KL +++++ N I D+ M PL+ + L +Q+ S
Sbjct: 156 NTLEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTN-IGDAGMDPLAKIKTLADVQLEKS 214
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-S 249
KVTD G+ L L L Y+N N C + K
Sbjct: 215 KVTDEGLVKLAPL-------------------------PLKYINFNYCTTINGPTMKMLG 249
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
+ +L+ L +++I D + LKGL+ L L + C + EG+ ++ L L
Sbjct: 250 QTPTLERLQGDYSKINDASMAELKGLSKLTHLRIRGCDVTGEGIKHIANNKALAKFELRD 309
Query: 310 TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
+ + D L ++ L ++ +++ + R + G+A L LTGLT+L L+ + D+
Sbjct: 310 SSVDDKGLEVISQLPAVTHVDISECRLASPEGIAQLGKLTGLTYLGLWETKTNDATLEAF 369
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
NL L + +TD + + ++ L LN++ L D + ++ L L S+NV
Sbjct: 370 GELVNLEELNLKSTSVTDQSLPVLMKMTKLKTLNVA-GTQLGDDSFLELAKLPNLKSMNV 428
Query: 429 SNSRI 433
+N+ I
Sbjct: 429 ANTSI 433
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 1/200 (0%)
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
+E + HL G+ N + GI D G+ NLT LT LE + LS T I+D ++ +++
Sbjct: 98 EESMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERLILSDTAITDRTIETAGKMNT 157
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L+ L L +TD GL LT L+ L +DL I D+G L K L +++ +T
Sbjct: 158 LEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDPLAKIKTLADVQLEKSKVT 217
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
D G+ + L L +N + + T++++ L L S+I A + LK L
Sbjct: 218 DEGLVKLAPL-PLKYINFNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLS 276
Query: 446 NLRSLTLESCKVTANDIKRL 465
L L + C VT IK +
Sbjct: 277 KLTHLRIRGCDVTGEGIKHI 296
>gi|406830574|ref|ZP_11090168.1| hypothetical protein SpalD1_03019 [Schlesneria paludicola DSM
18645]
Length = 404
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 141/299 (47%), Gaps = 25/299 (8%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
TD+D+ L L+SL +S ++++ GIA L L+ LT+L+L PV A L L
Sbjct: 63 FTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKKLIEL 122
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
SL L++ Q+SD + +L L L N IT+ L L L L+L
Sbjct: 123 DSLTTLDVADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTR 182
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ DEG+ L L NL + LS I+D L + GLS LK L+L A QITD GL L L
Sbjct: 183 VSDEGMTALKRLENLTELRLSGNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGL 242
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L L L ++ D+G L L +L+ +TD + + +++LT L+L +N
Sbjct: 243 NNLNELKLGRNQVKDNGVNALVEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKNP 302
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
I+ GLR+L L+NL+ + L VTA+ +KR Q
Sbjct: 303 -------------------------ISDFGLRNLTRLRNLKEIGLVEAPVTASGLKRFQ 336
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 142/278 (51%), Gaps = 5/278 (1%)
Query: 142 TRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
T+I G G+ L L L L++ + ++ K L L +L +L ++ ++V+D+ +
Sbjct: 85 TQISGKGIAELSVLRSLTVLHLANL-PVKNAQFKKLIELDSLTTLDVADTQVSDAALQGS 143
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
LT L L G +T A L+ LS G L L+L + ++SD+G ++ +L L L
Sbjct: 144 IAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTRVSDEGMTALKRLENLTELRLS 203
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
N ITD L + GL++L+ L+L + I D GL +L GL NL + L + D + L
Sbjct: 204 GNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGLNNLNELKLGRNQVKDNGVNAL 263
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
+ +L +L+ A QITD L+AL + LT LDL I+D G L +NL+ + +
Sbjct: 264 VEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKNPISDFGLRNLTRLRNLKEIGLV 323
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+T +G+K +D L+ N TD+ +E S
Sbjct: 324 EAPVTASGLKRFQDAIGTPLI---ITWNGTDQDIEAAS 358
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 116/215 (53%), Gaps = 3/215 (1%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
E TD + LK LESL+L I +G+ L+ L +L ++L+ + + +KL
Sbjct: 61 QEFTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKKLI 120
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
L SL +L++ Q++D L + LT L L G RIT++G L F L L++
Sbjct: 121 ELDSLTTLDVADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQ 180
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
++D G+ +K L +LT L LS N +TD LE I GL+ L L+++ ++IT AGL+HL
Sbjct: 181 TRVSDEGMTALKRLENLTELRLSGNV-ITDTGLEAIGGLSHLKILDLTATQITDAGLKHL 239
Query: 442 KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
+ L NL L L +V N + L ++P L++
Sbjct: 240 RGLNNLNELKLGRNQVKDNGVNALV--EIPTLIAL 272
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 129/266 (48%), Gaps = 7/266 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L S+DLSG+ ++ G+ L +L L + + + + L L +LT+L
Sbjct: 75 PELESLDLSGTQISGKGIAELSVLRSLTVLHLA-NLPVKNAQFKKLIELDSLTTLDVADT 133
Query: 117 NAITA--QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
A QG A L LV L R T + GL +L +L L++ ++D M
Sbjct: 134 QVSDAALQGSIAHPNLTTLV-LSGNRIT--NAGLNDLSKFGQLAILDLTQTR-VSDEGMT 189
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L L NL L++S + +TD+G+ + GL L +L+L +T A L L L +L L
Sbjct: 190 ALKRLENLTELRLSGNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGLNNLNELK 249
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L R Q+ D+G +I +L L+ +ITDECL L + NL +L+L I D GL
Sbjct: 250 LGRNQVKDNGVNALVEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKNPISDFGLR 309
Query: 295 NLTGLTNLESINLSFTGISDGSLRKL 320
NLT L NL+ I L ++ L++
Sbjct: 310 NLTRLRNLKEIGLVEAPVTASGLKRF 335
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 105/226 (46%), Gaps = 31/226 (13%)
Query: 44 VNDKWMDVIASQGS----SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
V D + A QGS +L ++ LSG+ +T++GL L L LD ++SD G+
Sbjct: 130 VADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQT-RVSDEGM 188
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
L+ L NLT L N IT G++A GL +L LDL
Sbjct: 189 TALKRLENLTELRL-SGNVITDTGLEAIGGLSHLKILDLT-------------------- 227
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
ITD+ +K L GL NL L++ ++V D+G+ L + L L+ +T
Sbjct: 228 -----ATQITDAGLKHLRGLNNLNELKLGRNQVKDNGVNALVEIPTLIALDFYATQITDE 282
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
CL +L + +L L+L + +SD G +++ +LK + L +T
Sbjct: 283 CLSALGQIANLTTLDLGKNPISDFGLRNLTRLRNLKEIGLVEAPVT 328
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 32/213 (15%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L F A+ DL + V+D+ M + + +L + LSG+ +TD+GL + S+L+
Sbjct: 167 LSKFGQLAILDLTQTR---VSDEGMTAL-KRLENLTELRLSGNVITDTGLEAIGGLSHLK 222
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
LD QI+D GL+HLRGL+NL L RN + G+ A + L+ LD
Sbjct: 223 ILDLT-ATQITDAGLKHLRGLNNLNELKLGRNQ-VKDNGVNALVEIPTLIALDF------ 274
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+ ITD + L + NL +L + + ++D G+ L L+
Sbjct: 275 -------------------YATQITDECLSALGQIANLTTLDLGKNPISDFGLRNLTRLR 315
Query: 205 KLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLN 236
L + L PVTA+ L A+G+ + N
Sbjct: 316 NLKEIGLVEAPVTASGLKRFQDAIGTPLIITWN 348
>gi|149175664|ref|ZP_01854283.1| hypothetical protein PM8797T_31103 [Planctomyces maris DSM 8797]
gi|148845383|gb|EDL59727.1| hypothetical protein PM8797T_31103 [Planctomyces maris DSM 8797]
Length = 660
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 191/384 (49%), Gaps = 17/384 (4%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
ISD + + L +L R N + + + L KL L C + L
Sbjct: 275 ISDQDRGRITTFTQLKTL--RLENVHLGRHLNDLSTFRKLEKLALRNCGLDEDDVATLGS 332
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC--SKVTDSGIAYLKGLQKLTLLNL 211
L +L L++ + + D + L L L+ L+++ +++T+ G+ YL+ +KL L+L
Sbjct: 333 LTQLRELDLSGNSSLNDVALFHLRNLNQLEELKVASYYNRITEKGLQYLRQPRKLKTLDL 392
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC--- 268
GC + A L ++ + SL LNL F + LK L E+T EC
Sbjct: 393 IGCMLKADGLAAIGDVSSLETLNLKVYCPERVDAHFFDPLRHLKSLR----ELTLECRQL 448
Query: 269 -----LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
L L L LE+L+L + DE + + +L+++ L+ ++D + L L
Sbjct: 449 KGGEGLSSLSQLPELEALHLLQTKLQDEDIRWIANCNSLKALTLNSYEVTDQGVSSLGSL 508
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
L+SLNLD ++ +GL +L L LT + L +TD+ +L + L+ L + G
Sbjct: 509 KQLESLNLDRCRLDGSGLVSLQQLHRLTDVSLNHTGVTDAVIPFLSSLSQLKRLTLENGR 568
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
++ A ++ +KDL L+ LNL+ NC ++D+ EL++ ++ L +LN++ +++++ GL L+
Sbjct: 569 VSSATLESLKDLKKLSELNLT-NCPVSDEICELLTQMSALRTLNLNKTKVSNIGLEGLQK 627
Query: 444 LKNLRSLTLESCKVTANDIKRLQS 467
L +L+L KVT +++L++
Sbjct: 628 ATGLETLSLRRTKVTRQGVQQLRT 651
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 177/381 (46%), Gaps = 58/381 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQGMKAFAGLINLVKLDLE 139
+ L+ LD + ++D L HLR L+ L L N IT +G++ L LDL
Sbjct: 334 TQLRELDLSGNSSLNDVALFHLRNLNQLEELKVASYYNRITEKGLQYLRQPRKLKTLDLI 393
Query: 140 RCTRIHGGLVNLKGLMKLESLNIK-WCNCITDSDM-KPLSGLTNLKSLQISCSKVTDSGI 197
C GL + + LE+LN+K +C D+ PL L +L+ L + C +
Sbjct: 394 GCMLKADGLAAIGDVSSLETLNLKVYCPERVDAHFFDPLRHLKSLRELTLECRQ------ 447
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
LKG L SLS L L L+L + +L D+ + SLK L
Sbjct: 448 --LKG---------------GEGLSSLSQLPELEALHLLQTKLQDEDIRWIANCNSLKAL 490
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSL 317
L E+TD+ + L L LESLNLD C + GLV+L L L ++L+ TG++D +
Sbjct: 491 TLNSYEVTDQGVSSLGSLKQLESLNLDRCRLDGSGLVSLQQLHRLTDVSLNHTGVTDAVI 550
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
L+ LS LK L L+ +++ L +L L L+ L+L ++D
Sbjct: 551 PFLSSLSQLKRLTLENGRVSSATLESLKDLKKLSELNLTNCPVSD--------------- 595
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
EIC + + +S+L LNL++ +++ LE + TGL +L++ +++T G
Sbjct: 596 EIC---------ELLTQMSALRTLNLNK-TKVSNIGLEGLQKATGLETLSLRRTKVTRQG 645
Query: 438 LRHLKPLKNLRSLTLESCKVT 458
++ L+ + L C++T
Sbjct: 646 VQQLRTV-------LADCQIT 659
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 159/327 (48%), Gaps = 8/327 (2%)
Query: 50 DVIASQGS--SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGL 105
D +A+ GS L +DLSG S + D L HL++ + L+ L ++ +I++ GL++LR
Sbjct: 325 DDVATLGSLTQLRELDLSGNSSLNDVALFHLRNLNQLEELKVASYYNRITEKGLQYLRQP 384
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCT-RIHGGLVN-LKGLMKLESLNI 162
L +L + A G+ A + +L L+L+ C R+ + L+ L L L +
Sbjct: 385 RKLKTLDLI-GCMLKADGLAAIGDVSSLETLNLKVYCPERVDAHFFDPLRHLKSLRELTL 443
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ + LS L L++L + +K+ D I ++ L L L VT +
Sbjct: 444 ECRQLKGGEGLSSLSQLPELEALHLLQTKLQDEDIRWIANCNSLKALTLNSYEVTDQGVS 503
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
SL +L L LNL+RC+L G ++ L ++L +TD + L L+ L+ L
Sbjct: 504 SLGSLKQLESLNLDRCRLDGSGLVSLQQLHRLTDVSLNHTGVTDAVIPFLSSLSQLKRLT 563
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L++ + L +L L L +NL+ +SD L +S+L++LNL+ ++++ GL
Sbjct: 564 LENGRVSSATLESLKDLKKLSELNLTNCPVSDEICELLTQMSALRTLNLNKTKVSNIGLE 623
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLR 369
L TGL L L ++T G LR
Sbjct: 624 GLQKATGLETLSLRRTKVTRQGVQQLR 650
>gi|46447550|ref|YP_008915.1| hypothetical protein pc1916 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401191|emb|CAF24640.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 310
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 128/226 (56%), Gaps = 9/226 (3%)
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINL 307
KI L LN + +T+ L+ LK NL++L L++C + D+GL +LT LT L+ ++L
Sbjct: 76 KKIEGLNFLNQAY--LTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDL 133
Query: 308 S-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSG 364
S ++D L L L L+ L L+A +TD GL LT LT L HLDL +TD+G
Sbjct: 134 SGCWNLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTDAG 193
Query: 365 AAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
A+L+ L+ L + C LTDAG+ H+ L+ L L LS NLTD L + LT L
Sbjct: 194 LAHLKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLTAL 253
Query: 424 VSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 467
LN+ N R +T AGL HL PLK L+ L L C KVT + R ++
Sbjct: 254 QHLNLRNCRNVTDAGLAHLTPLKALQQLNLRRCDKVTNTGLARFKT 299
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 121/249 (48%), Gaps = 54/249 (21%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ + +T++ L+ LKDC NL++L C ++D GLEHL L+ L
Sbjct: 84 LNQAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQ-------------- 129
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
LDL C + GLV+L L+ L+ L + C +TD + L+ LT L
Sbjct: 130 -----------HLDLSGCWNLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTAL 178
Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ- 239
+ L +S C +TD+G+A+LK L L L L C +T A L L+ L L YL L+ C
Sbjct: 179 QHLDLSDCMNLTDAGLAHLKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMN 238
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
L+DDG LVHLK LT L+ LNL +C + D GL +LT
Sbjct: 239 LTDDG------------------------LVHLKPLTALQHLNLRNCRNVTDAGLAHLTP 274
Query: 299 LTNLESINL 307
L L+ +NL
Sbjct: 275 LKALQQLNL 283
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 127/237 (53%), Gaps = 9/237 (3%)
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL 259
K ++ L LN +T A L +L +L L L CQ L+DDG E + + +L+ L+L
Sbjct: 76 KKIEGLNFLN--QAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDL 133
Query: 260 -GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS-FTGISDGS 316
G +TD LVHL L L+ L L++C + D+GLV+LT LT L+ ++LS ++D
Sbjct: 134 SGCWNLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTDAG 193
Query: 317 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNL 374
L L L++L+ L L +TD GLA L LTGL +L L +TD G +L+ L
Sbjct: 194 LAHLKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLTAL 253
Query: 375 RSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
+ L + +TDAG+ H+ L +L LNL + +T+ L L ++L + N
Sbjct: 254 QHLNLRNCRNVTDAGLAHLTPLKALQQLNLRRCDKVTNTGLARFKTLAASLNLRIIN 310
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD GL+HL + LQ LD + C+ ++D GL HL+ L+ L L +T G+
Sbjct: 163 NLTDDGLVHLTPLTALQHLDLSDCMNLTDAGLAHLKPLTALQHLGLSCCENLTDAGLAHL 222
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
A L L L L C + GLV+LK L L+ LN++ C +TD+ + L+ L L+ L
Sbjct: 223 APLTGLQYLALSDCMNLTDDGLVHLKPLTALQHLNLRNCRNVTDAGLAHLTPLKALQQLN 282
Query: 187 I-SCSKVTDSGIAYLKGL 203
+ C KVT++G+A K L
Sbjct: 283 LRRCDKVTNTGLARFKTL 300
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++TD+GL HL + LQ L + C+ ++D GL HL+ L+ L L+ R +T G+
Sbjct: 212 ENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLTALQHLNLRNCRNVTDAGLAH 271
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
L L +L+L RC ++ + GL K L SLN++ N
Sbjct: 272 LTPLKALQQLNLRRCDKVTNTGLARFKTLAA--SLNLRIIN 310
>gi|46447589|ref|YP_008954.1| hypothetical protein pc1955 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401230|emb|CAF24679.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 454
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 130/237 (54%), Gaps = 8/237 (3%)
Query: 239 QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 296
L+D +LK+L+L ITD+ L HL LT+L+ LNL C + D GL +L
Sbjct: 207 HLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCVNLTDAGLAHL 266
Query: 297 TGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLD 354
T LT L+ +NLS+ I+D L L L+ L+ LNL D +TD GLA LT LT L +L+
Sbjct: 267 TPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHLTPLTALLYLN 326
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L +T+ G A+L L+ L + LTDAG H+ L++L L+LS NLTD
Sbjct: 327 LSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLDLSDCENLTDA 386
Query: 413 TLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 467
L ++ LT L L +S R +T GL HL PL L+ L L C KVT + R ++
Sbjct: 387 GLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDAGLARFKT 443
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 4/190 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ ++C +I+D GL HL L++L L+ +T G+
Sbjct: 257 NLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHL 316
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L+ L+L +C + GL +L L L+ LN+KWC +TD+ L+ LT L+ L
Sbjct: 317 TPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLD 376
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C +TD+G+AYL L L L L C +T L L+ L +L +L+L C +++D
Sbjct: 377 LSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDA 436
Query: 244 GCEKFSKIGS 253
G +F + +
Sbjct: 437 GLARFKTLAT 446
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 135/247 (54%), Gaps = 8/247 (3%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
+ + D+ + LK + L LL+LE C +T L L+ L SL +LNL C L+D G
Sbjct: 206 AHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCVNLTDAGLAH 265
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESI 305
+ + +L+ LNL + +ITD L HL LT+L+ LNL C + D GL +LT LT L +
Sbjct: 266 LTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHLTPLTALLYL 325
Query: 306 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITD 362
NLS +++ L LA L+ L+ LNL +TD G + L SLT L HLDL +TD
Sbjct: 326 NLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLDLSDCENLTD 385
Query: 363 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
+G AYL + L+ L + LTD G+ H+ L++L L+L + +TD L L
Sbjct: 386 AGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDAGLARFKTLA 445
Query: 422 GLVSLNV 428
++L +
Sbjct: 446 TSLNLKI 452
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 137/256 (53%), Gaps = 9/256 (3%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++L+F+ ++D L L+ NL L AIT G+ A L +L L+L C
Sbjct: 197 IEALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCV 256
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
+ GL +L L L+ LN+ +C ITD+ + L+ LT+L+ L +S C +TD+G+A+L
Sbjct: 257 NLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHL 316
Query: 201 KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLN 258
L L LNL C +T L L+ L L YLNL C L+D G + + +L+ L+
Sbjct: 317 TPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLD 376
Query: 259 LGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINL-SFTGISDG 315
L E +TD L +L LT L+ L L C + D GL +LT LT L+ ++L ++D
Sbjct: 377 LSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDA 436
Query: 316 SLRKLAGLSSLKSLNL 331
L + L++ SLNL
Sbjct: 437 GLARFKTLAT--SLNL 450
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 114/222 (51%), Gaps = 32/222 (14%)
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGD----------EGLVN-LTGLTNLESI---- 305
FN T+E LV LKGL N C + D L+N + LT + I
Sbjct: 139 FNS-TEESLVGLKGLLNFAQ----QCQLNDLKNYLELTVVSALLNQASQLTEFQRIINHF 193
Query: 306 -----NLSFTG---ISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDL- 355
L+F+G ++D L L +LK L+L+A Q ITD GLA L LT L HL+L
Sbjct: 194 LDEIEALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLY 253
Query: 356 FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
F +TD+G A+L L+ L + +TDAG+ H+ L+ L LNLS NLTD L
Sbjct: 254 FCVNLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGL 313
Query: 415 ELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
++ LT L+ LN+S +T+ GL HL PL L+ L L+ C
Sbjct: 314 AHLTPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWC 355
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 40 QYPGVNDKWMDVIASQGSSLLS-------VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFC 91
QY +N KW + G S L+ +DLS ++TD+GL +L + LQ L + C
Sbjct: 348 QY--LNLKWCWNLTDAGFSHLASLTALQHLDLSDCENLTDAGLAYLASLTALQYLGLSQC 405
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
++D GL HL L+ L L R + +T G+ F L
Sbjct: 406 RNLTDVGLAHLTPLTALQHLDLRECDKVTDAGLARFKTL 444
>gi|54294508|ref|YP_126923.1| hypothetical protein lpl1579 [Legionella pneumophila str. Lens]
gi|53754340|emb|CAH15819.1| hypothetical protein lpl1579 [Legionella pneumophila str. Lens]
Length = 464
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 162/346 (46%), Gaps = 3/346 (0%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S++L +++ D G L +L +L+ I D G + L +L++L+ NN I
Sbjct: 48 SLNLRNNNIGDEGAKALAANQSLSTLNL-RANNIGDEGAKALAANQSLSTLNLSYNN-IG 105
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KA A +L L+L G L L +LN+++ N I D K L+
Sbjct: 106 AEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLRYNN-IGDEGAKALAANQ 164
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L +L + + + D G L Q L+ LNL + A +L+A SL LNL +
Sbjct: 165 SLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLRYNNI 224
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
+G + + SL LNL +N I DE L +L +LNL IGDEG L
Sbjct: 225 RAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQ 284
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
+L ++NLS+ I D + LA SL +LNL I G AL + L+ L+L I
Sbjct: 285 SLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYNNI 344
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
D GA L ++L +L + + G K + SL+ LNLS N
Sbjct: 345 GDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYN 390
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 148/297 (49%), Gaps = 2/297 (0%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+++SLN++ N I D K L+ +L +L + + + D G L Q L+ LNL
Sbjct: 45 EIKSLNLR-NNNIGDEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLSYNN 103
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ A +L+A SL LNL + D+G + + SL LNL +N I DE L
Sbjct: 104 IGAEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLRYNNIGDEGAKALAAN 163
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+L +LNL + IGDEG L +L ++NLS+ I + LA SL +LNL
Sbjct: 164 QSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLRYNN 223
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I G AL + L+ L+L I D GA L ++L +L + + D G K +
Sbjct: 224 IRAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAAN 283
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
SL+ LNLS N N+ D+ + ++ L +LN+S + I + G + L ++L +L L
Sbjct: 284 QSLSTLNLSYN-NIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNL 339
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 130/272 (47%), Gaps = 1/272 (0%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL + +++ + + + +L ++ LNL + +L+A SL LNL +
Sbjct: 21 NLSNQKLNAQDIKELIVPFLNTNPEIKSLNLRNNNIGDEGAKALAANQSLSTLNLRANNI 80
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
D+G + + SL LNL +N I E L +L +LNL + IGDEG L
Sbjct: 81 GDEGAKALAANQSLSTLNLSYNNIGAEGAKALAANQSLSTLNLRANNIGDEGAKALAANQ 140
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
+L ++NL + I D + LA SL +LNL I D G AL + L+ L+L I
Sbjct: 141 SLSTLNLRYNNIGDEGAKALAANQSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNI 200
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
GA L ++L +L + + G K + SL+ LNLS N N+ D+ + ++
Sbjct: 201 RAEGAKALAANQSLSTLNLRYNNIRAEGAKALAANQSLSTLNLSYN-NIGDEGAKALAAN 259
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L +LN+S + I G + L ++L +L L
Sbjct: 260 QSLSTLNLSYNNIGDEGAKALAANQSLSTLNL 291
>gi|330506767|ref|YP_004383195.1| internalin-A [Methanosaeta concilii GP6]
gi|328927575|gb|AEB67377.1| internalin-A, putative [Methanosaeta concilii GP6]
Length = 567
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 146/416 (35%), Positives = 219/416 (52%), Gaps = 66/416 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL LD + QI+D L GL+NLT L NN IT + + +GLINL+ LDL
Sbjct: 166 TNLTDLDLSTN-QITDAS--PLSGLTNLTDLDL-DNNQIT--DVSSLSGLINLMNLDLS- 218
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITD-------------------SDMKPLSGLTN 181
RI V+L GL + L++ W N ITD +D+ LSGLTN
Sbjct: 219 SNRITN--VSLSGLTNVVWLDL-WGNQITDVTLSGLTNLTWLDVSRNQIADVSSLSGLTN 275
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L L + C+++TD ++ L GL LT L+L +T A LS L +L YL+L+ +++
Sbjct: 276 LTKLYLGCNQITD--VSSLSGLTNLTDLDLSTNQITDAS--PLSGLTNLTYLDLDNNRIN 331
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
D S + +L L L N+I D + L GLTNL+ L+L + I D + +L+GLTN
Sbjct: 332 D---VSLSDLTNLTDLELSNNQIND--VSSLSGLTNLKDLDLSNNQIND--ISSLSGLTN 384
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L + LS I++ + L+ L+SL+ L+LD QI D +++L++LT L L L T
Sbjct: 385 LTDLELSSNEITN--ISSLSSLASLRCLDLDNNQIID--VSSLSALTSLKWLRLCSNHAT 440
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
D A+ L + NLR L++ +TD V + L +L LNLS N +TD + +SGL
Sbjct: 441 D--ASSLSSLVNLRWLDLSSNQITD--VSPLSGLYNLGWLNLSSN-QITD--VSPLSGLA 493
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
L L++S+++IT + PL NL +L L+S+ +P+ + R
Sbjct: 494 NLTGLDLSSNQIT-----DVSPLSNLTNLIW----------MDLRSKQIPDASTLR 534
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 121/362 (33%), Positives = 184/362 (50%), Gaps = 59/362 (16%)
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
I L+ D+ I G L+ + LE+L+++ N I SD LSGLT LK L++S +
Sbjct: 60 IKLLNADMSSIKDITG----LERCINLENLSLR-ENEI--SDASSLSGLTGLKRLELSSN 112
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACL----------------DSLSALGSLFYLN 234
++TD ++ L L+ L+L + V+ + L SLS L +L L+
Sbjct: 113 QITDVSLSGLANLETLSLWDNHITNVSLSGLTNLDTLLLWGNKIINVSSLSGLTNLTDLD 172
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL- 293
L+ Q++D S + +L L+L N+ITD + L GL NL +L+L S I + L
Sbjct: 173 LSTNQITD--ASPLSGLTNLTDLDLDNNQITD--VSSLSGLINLMNLDLSSNRITNVSLS 228
Query: 294 -----------------VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
V L+GLTNL +++S I+D S L+GL++L L L QI
Sbjct: 229 GLTNVVWLDLWGNQITDVTLSGLTNLTWLDVSRNQIADVS--SLSGLTNLTKLYLGCNQI 286
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD +++L+ LT LT LDL +ITD A+ L NL L++ + D + DL+
Sbjct: 287 TD--VSSLSGLTNLTDLDLSTNQITD--ASPLSGLTNLTYLDLDNNRINDVS---LSDLT 339
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LT L LS N + D + +SGLT L L++SN++I + L L NL L L S +
Sbjct: 340 NLTDLELSNN-QIND--VSSLSGLTNLKDLDLSNNQIN--DISSLSGLTNLTDLELSSNE 394
Query: 457 VT 458
+T
Sbjct: 395 IT 396
>gi|283778672|ref|YP_003369427.1| hypothetical protein Psta_0882 [Pirellula staleyi DSM 6068]
gi|283437125|gb|ADB15567.1| hypothetical protein Psta_0882 [Pirellula staleyi DSM 6068]
Length = 450
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 137/251 (54%), Gaps = 2/251 (0%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+D + LG++ +L+L ++D K +KI +K L LG +++ L L L +LE
Sbjct: 196 VDHVVQLGNIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVDLEY 255
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L+L I D L L L S+ L FT ++D L KL + L +L LDA ++TD G
Sbjct: 256 LSLKQLPIDDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVTDEG 315
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+ + ++ L L + ++ G ++L +LR L + G L D ++H+ L ++ +
Sbjct: 316 MLEVAKISTLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLENIEI 375
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L L + N+TDK +E + G+T L +L +S + +T + L +++L+++ L +V+A+
Sbjct: 376 LGLD-HTNVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSAD 434
Query: 461 DIKRLQSRDLP 471
+RL+ R+LP
Sbjct: 435 GAERLR-RELP 444
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 115/237 (48%), Gaps = 4/237 (1%)
Query: 161 NIKWCNC----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
NI+W + +TD+ + L+ + +K L + +K++ G+A L L L L+L+ P+
Sbjct: 204 NIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVDLEYLSLKQLPI 263
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
L L L L L+ +++D G K K L L L +TDE ++ + ++
Sbjct: 264 DDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVTDEGMLEVAKIS 323
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L SL + + + G +L L +L ++L + D +L+ L GL +++ L LD +
Sbjct: 324 TLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLENIEILGLDHTNV 383
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
TD + L +T L L L +TD L ++L+++ + G ++ G + ++
Sbjct: 384 TDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAERLR 440
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 106/225 (47%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L N++ L + S VTD+ + L + ++ L L ++ L +L+ L L YL+L +
Sbjct: 202 LGNIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVDLEYLSLKQL 261
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D ++ + L L L F E+TD L L L++L LD+ + DEG++ +
Sbjct: 262 PIDDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVTDEGMLEVAK 321
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
++ L S+ + T + L L+SL+ L+L Q+ D L L L + L L
Sbjct: 322 ISTLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLENIEILGLDHT 381
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
+TD L L++L + +TD ++ + + SL + L
Sbjct: 382 NVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYL 426
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 5/183 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ D L L + L SL +F +++D GL L + L +L +T +GM A
Sbjct: 263 IDDRDLQELPEFPKLMSLGLDFT-EVTDAGLTKLPKFAMLDTLWLDATR-VTDEGMLEVA 320
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+ L L + T++ G G +L L L L++K + D ++ L GL N++ L +
Sbjct: 321 KISTLRSLFMP-ATQVKGPGFSHLMKLASLRYLSLKGVQ-LDDVALQHLVGLENIEILGL 378
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ VTD I L G+ +L L L VT ++SLS + SL + L+ ++S DG E+
Sbjct: 379 DHTNVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAER 438
Query: 248 FSK 250
+
Sbjct: 439 LRR 441
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 5/186 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L Q P ++D+ + + + L+S+ L ++VTD+GL L + L +L +
Sbjct: 253 LEYLSLKQLP-IDDRDLQEL-PEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLD-AT 309
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D G+ + +S L SL F + G L +L L L+ L +L
Sbjct: 310 RVTDEGMLEVAKISTLRSL-FMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLV 368
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL +E L + N +TD ++ L G+T LK+L +S + VTD I L ++ L + L
Sbjct: 369 GLENIEILGLDHTN-VTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLH 427
Query: 213 GCPVTA 218
G V+A
Sbjct: 428 GSEVSA 433
>gi|255537779|ref|XP_002509956.1| protein binding protein, putative [Ricinus communis]
gi|223549855|gb|EEF51343.1| protein binding protein, putative [Ricinus communis]
Length = 597
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 110/385 (28%), Positives = 185/385 (48%), Gaps = 45/385 (11%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDS 171
R NA+ A+ M L L+L C +I L +L G+ L+ L++ +TD+
Sbjct: 70 LRGENAVDAEWMAYLGAFRYLRYLNLADCNKITSSALWSLTGMTSLKELDLSRSVKVTDA 129
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
++ L +++L+ L+I + +T G+A L L L++L+L G PVT L SL L L
Sbjct: 130 GIRHLLSISSLEILRIPETGLTAKGVALLTSLTNLSVLDLGGLPVTDMALSSLQVLTKLE 189
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI--- 288
YL+L +S++G L LNLG+ +T L + +LE LNL +C I
Sbjct: 190 YLDLWGSNISNNGVAVLQLFPKLSFLNLGWTSVT-----RLPSMLSLEYLNLSNCTIESL 244
Query: 289 ------GDEGL---VNLTGLT---------NLESINLSFTGISDGSLRKLAGLSSLK--- 327
GD+ V L+G T N+E LSF +S+ SL+ L +K
Sbjct: 245 LEGDGDGDKAPLTKVILSGATFPNEAEAFYNIEPRFLSFLDVSNSSLQGFYFLHDMKMLE 304
Query: 328 SLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLT 385
L+L + + D + A+ + LT+L+L R+T +G A L + L L + +
Sbjct: 305 HLDLSSTMMGDDAIEAVACIGANLTNLNLSKTRVTSAGLAILAEHVPKLEYLSLSHALVD 364
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTD------------KTLELISGLTGLVSLNVSNSRI 433
D + +I +SSL +++LS N N+ +L+ + GL+GL SLN+ ++++
Sbjct: 365 DFALSYIGMMSSLKVVDLS-NTNIKGFIRQMGVETNLIPSLKALQGLSGLQSLNLEHTQV 423
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVT 458
A + + + L L+L+S +
Sbjct: 424 RDAAVAPVSSFQELSHLSLKSASLA 448
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 108/408 (26%), Positives = 176/408 (43%), Gaps = 69/408 (16%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T S L L ++L+ LD + ++++D G+ HL +S+L L +TA+G+
Sbjct: 101 ITSSALWSLTGMTSLKELDLSRSVKVTDAGIRHLLSISSLEILRIP-ETGLTAKGVALLT 159
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L NL LDL L +L+ L KLE L++ W + I+++ + L L L +
Sbjct: 160 SLTNLSVLDLGGLPVTDMALSSLQVLTKLEYLDL-WGSNISNNGVAVLQLFPKLSFLNLG 218
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC---------------PVTAACLD----------- 222
+ VT L + L LNL C P+T L
Sbjct: 219 WTSVTR-----LPSMLSLEYLNLSNCTIESLLEGDGDGDKAPLTKVILSGATFPNEAEAF 273
Query: 223 -------------SLSALGSLFYLN---------LNRCQLSDDGCEKFSKIGS-LKVLNL 259
S S+L ++L+ L+ + DD E + IG+ L LNL
Sbjct: 274 YNIEPRFLSFLDVSNSSLQGFYFLHDMKMLEHLDLSSTMMGDDAIEAVACIGANLTNLNL 333
Query: 260 GFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD---- 314
+T L L + + LE L+L + D L + +++L+ ++LS T I
Sbjct: 334 SKTRVTSAGLAILAEHVPKLEYLSLSHALVDDFALSYIGMMSSLKVVDLSNTNIKGFIRQ 393
Query: 315 --------GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
SL+ L GLS L+SLNL+ Q+ D +A ++S L+HL L A + D
Sbjct: 394 MGVETNLIPSLKALQGLSGLQSLNLEHTQVRDAAVAPVSSFQELSHLSLKSASLADETLY 453
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+L + L SL I LT+ G+ + +L +L+L LT++ +
Sbjct: 454 HLSSLSKLTSLVIGDAVLTNCGLDLFRPPVALKMLDLRGCWLLTEEAI 501
>gi|290974856|ref|XP_002670160.1| predicted protein [Naegleria gruberi]
gi|284083716|gb|EFC37416.1| predicted protein [Naegleria gruberi]
Length = 376
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 167/342 (48%), Gaps = 6/342 (1%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L N+ L LER R + GLMK L L+ + NCI +K + + NL L I
Sbjct: 35 LENIENLRLERNNRFFD--CQIIGLMKGLTVLSAE--NCIGTEGVKHICKMNNLTKLNIE 90
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++ + G Y+ +++LT LN+ + ++ +S L +L L + C++ D+G +
Sbjct: 91 RNEIGEEGAKYISKMKQLTELNVGWNGIGKEGVEFISELKNLTLLEIEACRICDEGAKSI 150
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
S++ L LN+ +N I++ +L L L L L C I +EG ++ L L +++S
Sbjct: 151 SELKQLTHLNISYNNISNLGSKYLTELKQLTVLTLCDCNISEEGCKYISELNQLTDLDIS 210
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
I + ++G+ L L + + T L ++ + +T+L++ + D GA Y+
Sbjct: 211 NNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKISEMKQVTNLNISWNYVGDEGAKYI 270
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+ K L LE+ ++ G KHI +L LT LN+ +N N+ + IS + L L++
Sbjct: 271 SDMKQLTKLEVVRSDISTEGAKHISELKQLTDLNIGEN-NIGGEGAIAISKMNQLRILDI 329
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 470
S++ I G H+ +K L L + + KR+ + L
Sbjct: 330 SDNNIGGIGAEHVSQMKQLTHLDISHNCIGNYGAKRINTMKL 371
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 142/314 (45%), Gaps = 26/314 (8%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G++H+ ++NLT L+ RN I +G K + + L +L++ G+ +
Sbjct: 70 IGTEGVKHICKMNNLTKLNIERN-EIGEEGAKYISKMKQLTELNVGWNGIGKEGVEFISE 128
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L L I+ C I D K +S L L L IS + +++ G YL L++LT+L L
Sbjct: 129 LKNLTLLEIEACR-ICDEGAKSISELKQLTHLNISYNNISNLGSKYLTELKQLTVLTL-- 185
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
C C +S++GC+ S++ L L++ N+I + ++
Sbjct: 186 CD----------------------CNISEEGCKYISELNQLTDLDISNNDIGCNGVEYIS 223
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
G+ L L + + L ++ + + ++N+S+ + D + ++ + L L +
Sbjct: 224 GMKQLLFLYIYGTNMYPTELQKISEMKQVTNLNISWNYVGDEGAKYISDMKQLTKLEVVR 283
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
I+ G ++ L LT L++ I GA + LR L+I + G +H+
Sbjct: 284 SDISTEGAKHISELKQLTDLNIGENNIGGEGAIAISKMNQLRILDISDNNIGGIGAEHVS 343
Query: 394 DLSSLTLLNLSQNC 407
+ LT L++S NC
Sbjct: 344 QMKQLTHLDISHNC 357
>gi|290997674|ref|XP_002681406.1| predicted protein [Naegleria gruberi]
gi|284095030|gb|EFC48662.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 116/427 (27%), Positives = 209/427 (48%), Gaps = 12/427 (2%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 94
D+ Q V K++ S+ L S+D+ + + G + L SLD QI
Sbjct: 8 DIGENQIGAVGAKFI----SEMKQLTSLDIIYNRIGAVGAKLISKMKQLTSLDIGGN-QI 62
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLK 152
D G + + + LTSLS NN I A G + + + L LD+ C G G+ ++
Sbjct: 63 GDEGAKFISEMKQLTSLSIY-NNLIGAVGFEFISEMKQLTSLDI--CYNEIGDEGVKSIC 119
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L SL+I + N I D +K +S + L SL I+ +++ G + +++LT L++
Sbjct: 120 EMKQLTSLSI-YNNRIGDEGVKFISEMKQLTSLDINNNRIGVQGAKSICEMKQLTSLSIY 178
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
A +S + L L+++ ++ +G + S++ L LN+ +N I E + +
Sbjct: 179 NNQTGAVGAKFISEMKQLTSLDISVNEIGVEGAKFISEMKQLTSLNICYNRIGAEGVKLI 238
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+ L SL++ IGDEG ++ + L S+N+ I D + ++ + L SL
Sbjct: 239 SEMKQLTSLDIGGNEIGDEGAKFISEMKQLTSLNICENQIGDEGAKSISEMKQLTSLGAY 298
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+I G ++ + LT L++ +I D GA + K L SL+I + D GVK I
Sbjct: 299 NNEIGVEGTKLISEMKQLTSLNISKNQIGDEGAKLISEMKQLASLDIYYNEIGDEGVKLI 358
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
++ L LN+S+N + D+ +LIS + L SL++ + I G++ + +K L SL++
Sbjct: 359 SEMKQLKSLNISKN-QIGDEGAKLISEMKQLTSLDIHFNEIGDEGVKLISEMKQLTSLSI 417
Query: 453 ESCKVTA 459
+ K+ +
Sbjct: 418 YNQKMKS 424
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 146/297 (49%), Gaps = 2/297 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L+SL+I N I K +S + L SL I +++ G + +++LT L++ G
Sbjct: 1 MKQLKSLDIGE-NQIGAVGAKFISEMKQLTSLDIIYNRIGAVGAKLISKMKQLTSLDIGG 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L L++ + G E S++ L L++ +NEI DE + +
Sbjct: 60 NQIGDEGAKFISEMKQLTSLSIYNNLIGAVGFEFISEMKQLTSLDICYNEIGDEGVKSIC 119
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L SL++ + IGDEG+ ++ + L S++++ I + + + L SL++
Sbjct: 120 EMKQLTSLSIYNNRIGDEGVKFISEMKQLTSLDINNNRIGVQGAKSICEMKQLTSLSIYN 179
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
Q G ++ + LT LD+ I GA ++ K L SL IC + GVK I
Sbjct: 180 NQTGAVGAKFISEMKQLTSLDISVNEIGVEGAKFISEMKQLTSLNICYNRIGAEGVKLIS 239
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
++ LT L++ N + D+ + IS + L SLN+ ++I G + + +K L SL
Sbjct: 240 EMKQLTSLDIGGN-EIGDEGAKFISEMKQLTSLNICENQIGDEGAKSISEMKQLTSL 295
>gi|290993162|ref|XP_002679202.1| predicted protein [Naegleria gruberi]
gi|284092818|gb|EFC46458.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 162/338 (47%), Gaps = 8/338 (2%)
Query: 122 QGMKAFAGLINLVKLDLERC-TRIHGGLVNLKGLMKLE-SLNIKWCNCITDSDMKPLSGL 179
Q K GL L +L + R G + LK L L N WC T +K L
Sbjct: 14 QDAKYIGGLKQLTRLTIYSSHIRDIGKISELKQLTYLNVPANGIWC--YTTKQVKEFKQL 71
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
T +L I ++V G Y+ L++LT L+++ + ++ LS L L YLN++
Sbjct: 72 T---TLIIDQNQVGSEGCKYISELKQLTSLSIDENFIYDEGVEYLSELAQLTYLNISNNG 128
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+ +GC+ K+ L L N I E ++ L L+ L++ IGD+GL ++ L
Sbjct: 129 VGSEGCKYVGKMKRLTSLGFYNNRIGKEGAKYISTLNQLKQLDISRTNIGDKGLEHIGQL 188
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
+ L S++L I +G + L+ L L LN+ I + G+ + L L +L + R
Sbjct: 189 SQLTSLDLYCNKIGNGGAKYLSELKQLTYLNISENHIGNEGIKYIGELKQLVNLIINNNR 248
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
I + G Y+ K L L I + + G+K+I DL LT + +S+N + + + I
Sbjct: 249 IGNDGVKYIGELKQLTYLNISENRIGNEGIKYIGDLKQLTNIIISRNW-IGSEGAKYIGK 307
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L+ L SL +S++ I + G ++L LK L L +E K+
Sbjct: 308 LSQLTSLGLSSNNIDNEGAKYLSELKELSFLNIERNKI 345
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 3/184 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +D+S +++ D GL H+ S L SLD +C +I +GG ++L L LT L+ N
Sbjct: 165 NQLKQLDISRTNIGDKGLEHIGQLSQLTSLDL-YCNKIGNGGAKYLSELKQLTYLNISEN 223
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ I +G+K L LV L + + G+ + L +L LNI N I + +K +
Sbjct: 224 H-IGNEGIKYIGELKQLVNLIINNNRIGNDGVKYIGELKQLTYLNIS-ENRIGNEGIKYI 281
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L ++ IS + + G Y+ L +LT L L + LS L L +LN+
Sbjct: 282 GDLKQLTNIIISRNWIGSEGAKYIGKLSQLTSLGLSSNNIDNEGAKYLSELKELSFLNIE 341
Query: 237 RCQL 240
R ++
Sbjct: 342 RNKI 345
>gi|188586163|ref|YP_001917708.1| hypothetical protein Nther_1542 [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350850|gb|ACB85120.1| Leucine-rich repeat, ribonuclease inhibitor subtype [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 344
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 148/288 (51%), Gaps = 10/288 (3%)
Query: 123 GMKAFAGLINLVKLDLERCTR--IHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLS 177
+K G+ + + ++E T + G +N+KG+ + L+ L+++ D+ L+
Sbjct: 42 AIKEELGVEQITEENIEDLTTLTVSGEDINIKGIEYAINLQELSLQGTKI---EDVNTLA 98
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ NL+ L ++ +++TD GI L L ++L VT L+ SL L L+
Sbjct: 99 EVDNLEELNLNYTEITDEGIEQLAEADNLKQISLTHTDVTDEGTKLLAESESLERLILSG 158
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+++DDG E + +LK L+L ++TD+ HL NLE L+L + DEG+ L
Sbjct: 159 TEVTDDGLEHLIEADNLKKLDLHGTDVTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLV 218
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
+ NLE + L +T ++D + LA +L+ L+LD +IT+ G+ L L LDL
Sbjct: 219 KVDNLEVLILGWTEVTDNGVEYLAEADNLEMLHLDGTEITNEGVKYLAEADNLEELDLKQ 278
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
++TD A L +L L++ +TD GVK + + SL ++NL +
Sbjct: 279 TKVTDVNA--LAETDSLEELDLWDTDVTDEGVKELAEADSLKVVNLDE 324
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 148/296 (50%), Gaps = 11/296 (3%)
Query: 104 GLSNLTSLSFRRNNAITAQG----MKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLE 158
G+ +T + +T G +K INL +L L + T+I VN L + LE
Sbjct: 48 GVEQITEENIEDLTTLTVSGEDINIKGIEYAINLQELSL-QGTKIED--VNTLAEVDNLE 104
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
LN+ + ITD ++ L+ NLK + ++ + VTD G L + L L L G VT
Sbjct: 105 ELNLNYTE-ITDEGIEQLAEADNLKQISLTHTDVTDEGTKLLAESESLERLILSGTEVTD 163
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L+ L +L L+L+ ++DDG E ++ +L+ L+L E+TDE + L + NL
Sbjct: 164 DGLEHLIEADNLKKLDLHGTDVTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLVKVDNL 223
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
E L L + D G+ L NLE ++L T I++ ++ LA +L+ L+L ++TD
Sbjct: 224 EVLILGWTEVTDNGVEYLAEADNLEMLHLDGTEITNEGVKYLAEADNLEELDLKQTKVTD 283
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
AL L LDL+ +TD G L +L+ + + +T+ GV+H++D
Sbjct: 284 VN--ALAETDSLEELDLWDTDVTDEGVKELAEADSLKVVNLDETEVTNEGVEHLED 337
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 128/241 (53%), Gaps = 7/241 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L Y + D+ ++ +A + +L + L+ +DVTD G L + +L+ L +
Sbjct: 103 LEELNLN-YTEITDEGIEQLA-EADNLKQISLTHTDVTDEGTKLLAESESLERLILSGT- 159
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D GLEHL NL L + +T G + A NL KL L G+ L
Sbjct: 160 EVTDDGLEHLIEADNLKKLDLHGTD-VTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLV 218
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ LE L + W +TD+ ++ L+ NL+ L + +++T+ G+ YL L L+L+
Sbjct: 219 KVDNLEVLILGWTE-VTDNGVEYLAEADNLEMLHLDGTEITNEGVKYLAEADNLEELDLK 277
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
VT +++L+ SL L+L ++D+G ++ ++ SLKV+NL E+T+E + HL
Sbjct: 278 QTKVTD--VNALAETDSLEELDLWDTDVTDEGVKELAEADSLKVVNLDETEVTNEGVEHL 335
Query: 273 K 273
+
Sbjct: 336 E 336
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 42/214 (19%)
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT---NLESINLSFTGISDG 315
LG +IT+E + L LT + E +N+ G+ NL+ ++L T I D
Sbjct: 47 LGVEQITEENIEDLTTLT-----------VSGED-INIKGIEYAINLQELSLQGTKIED- 93
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+ LA + +L+ LNL+ +ITD G+ L L + L +TD G L ++L
Sbjct: 94 -VNTLAEVDNLEELNLNYTEITDEGIEQLAEADNLKQISLTHTDVTDEGTKLLAESESLE 152
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G +TD G++H+ + +L L+L + +T
Sbjct: 153 RLILSGTEVTDDGLEHLIEADNLKKLDLH-------------------------GTDVTD 187
Query: 436 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 469
G HL NL L+L +VT I++L D
Sbjct: 188 DGAEHLAETDNLEKLSLVDTEVTDEGIEQLVKVD 221
>gi|225426352|ref|XP_002266070.1| PREDICTED: uncharacterized protein LOC100261612 [Vitis vinifera]
Length = 598
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 131/498 (26%), Positives = 226/498 (45%), Gaps = 74/498 (14%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++ + + L+ R L LE F+ +++ + L V+ +WM I L S
Sbjct: 40 MPSHLAEALLHRLIRRRILNPSLLEVFK-FSVEKIDLRGESSVDAEWMAYIGG-FCCLCS 97
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++++ +T+S L + NL+ LD + CI+ SD GL HL + L L +T
Sbjct: 98 LNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKLCISET-GVT 156
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A G+ + L NL LDL L +L+ L KL+ L++ W + I++ L
Sbjct: 157 ADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYLDL-WGSKISNKGAADLVVFP 215
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--------ACLDSLSALGSLF- 231
L L I+ + VT L L + LN+ C + + A L+ ++ G+ F
Sbjct: 216 KLSFLNIAWTDVTT-----LPDLPSIACLNMSNCTIHSMFEGEGAKALLEKITVSGATFL 270
Query: 232 ---------------YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL- 275
+L+++R L + C S + +L+ L+L F + D+ + + +
Sbjct: 271 NVSEAFLFIETSFLSFLDVSRSSL-NSFC-FLSCMKALEHLDLSFTMMGDDSIQLIACIG 328
Query: 276 TNLESLNLDSCGIGDEGLVNLTG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNL--- 331
NL +LNL + + G+ L G + NLE+I+LS T + D ++ ++ +SS+K +NL
Sbjct: 329 ANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSVKIINLSNT 388
Query: 332 --------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
D+ + + LAAL SL + LDL G ++ D L F+ L L + G
Sbjct: 389 NVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLNELSLKGTR 448
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
LTD L+L Q +S L L++L++ ++ +T+ GL KP
Sbjct: 449 LTD--------------LSLYQ-----------LSSLPNLINLSIGDTVLTNGGLNSFKP 483
Query: 444 LKNLRSLTLESCKVTAND 461
L+ L L C + D
Sbjct: 484 PATLKLLDLRGCWLLTED 501
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 184/400 (46%), Gaps = 44/400 (11%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 169
+ R +++ A+ M G L L++ C RI + L + G+ L+ L++ C +
Sbjct: 73 IDLRGESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRCIKFS 132
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
DS ++ L + L+ L IS + VT GI + L L++L+L G PVT L SL L
Sbjct: 133 DSGLRHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTK 192
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI- 288
L YL+L ++S+ G L LN+ + ++T L L ++ LN+ +C I
Sbjct: 193 LQYLDLWGSKISNKGAADLVVFPKLSFLNIAWTDVTT-----LPDLPSIACLNMSNCTIH 247
Query: 289 ------GDEGL---VNLTGLTNL---------ESINLSFTGISDGSLRKLAGLSSLKS-- 328
G + L + ++G T L E+ LSF +S SL LS +K+
Sbjct: 248 SMFEGEGAKALLEKITVSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCFLSCMKALE 307
Query: 329 -LNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRN-FKNLRSLEICGGGLT 385
L+L + D + + + L +L+L R++ +G + L NL ++ + +
Sbjct: 308 HLDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVD 367
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNL-----TDKTLELISGLTGLVSLN------VSNSRIT 434
D + +I +SS+ ++NLS N N+ +D L L L SLN + +++
Sbjct: 368 DVAISYISMMSSVKIINLS-NTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVE 426
Query: 435 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
L L + L L+L+ ++T D+ Q LPNL+
Sbjct: 427 DEALCPLLRFQQLNELSLKGTRLT--DLSLYQLSSLPNLI 464
>gi|297742329|emb|CBI34478.3| unnamed protein product [Vitis vinifera]
Length = 588
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 131/498 (26%), Positives = 226/498 (45%), Gaps = 74/498 (14%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++ + + L+ R L LE F+ +++ + L V+ +WM I L S
Sbjct: 40 MPSHLAEALLHRLIRRRILNPSLLEVFK-FSVEKIDLRGESSVDAEWMAYIGG-FCCLCS 97
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++++ +T+S L + NL+ LD + CI+ SD GL HL + L L +T
Sbjct: 98 LNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKLCISET-GVT 156
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A G+ + L NL LDL L +L+ L KL+ L++ W + I++ L
Sbjct: 157 ADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYLDL-WGSKISNKGAADLVVFP 215
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--------ACLDSLSALGSLF- 231
L L I+ + VT L L + LN+ C + + A L+ ++ G+ F
Sbjct: 216 KLSFLNIAWTDVTT-----LPDLPSIACLNMSNCTIHSMFEGEGAKALLEKITVSGATFL 270
Query: 232 ---------------YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL- 275
+L+++R L + C S + +L+ L+L F + D+ + + +
Sbjct: 271 NVSEAFLFIETSFLSFLDVSRSSL-NSFC-FLSCMKALEHLDLSFTMMGDDSIQLIACIG 328
Query: 276 TNLESLNLDSCGIGDEGLVNLTG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNL--- 331
NL +LNL + + G+ L G + NLE+I+LS T + D ++ ++ +SS+K +NL
Sbjct: 329 ANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSVKIINLSNT 388
Query: 332 --------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
D+ + + LAAL SL + LDL G ++ D L F+ L L + G
Sbjct: 389 NVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLNELSLKGTR 448
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
LTD L+L Q +S L L++L++ ++ +T+ GL KP
Sbjct: 449 LTD--------------LSLYQ-----------LSSLPNLINLSIGDTVLTNGGLNSFKP 483
Query: 444 LKNLRSLTLESCKVTAND 461
L+ L L C + D
Sbjct: 484 PATLKLLDLRGCWLLTED 501
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 184/400 (46%), Gaps = 44/400 (11%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 169
+ R +++ A+ M G L L++ C RI + L + G+ L+ L++ C +
Sbjct: 73 IDLRGESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRCIKFS 132
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
DS ++ L + L+ L IS + VT GI + L L++L+L G PVT L SL L
Sbjct: 133 DSGLRHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTK 192
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI- 288
L YL+L ++S+ G L LN+ + ++T L L ++ LN+ +C I
Sbjct: 193 LQYLDLWGSKISNKGAADLVVFPKLSFLNIAWTDVTT-----LPDLPSIACLNMSNCTIH 247
Query: 289 ------GDEGL---VNLTGLTNL---------ESINLSFTGISDGSLRKLAGLSSLKS-- 328
G + L + ++G T L E+ LSF +S SL LS +K+
Sbjct: 248 SMFEGEGAKALLEKITVSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCFLSCMKALE 307
Query: 329 -LNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRN-FKNLRSLEICGGGLT 385
L+L + D + + + L +L+L R++ +G + L NL ++ + +
Sbjct: 308 HLDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVD 367
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNL-----TDKTLELISGLTGLVSLN------VSNSRIT 434
D + +I +SS+ ++NLS N N+ +D L L L SLN + +++
Sbjct: 368 DVAISYISMMSSVKIINLS-NTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVE 426
Query: 435 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
L L + L L+L+ ++T D+ Q LPNL+
Sbjct: 427 DEALCPLLRFQQLNELSLKGTRLT--DLSLYQLSSLPNLI 464
>gi|290972120|ref|XP_002668808.1| predicted protein [Naegleria gruberi]
gi|284082332|gb|EFC36064.1| predicted protein [Naegleria gruberi]
Length = 329
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 156/299 (52%), Gaps = 2/299 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I + N I K +S + +L SL I +++ G Y+ +++LT LN+
Sbjct: 25 MKQLTSLDI-YSNEIGVEGAKYISEMKSLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGY 83
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L L+++ ++ +G + S++ L LN+G+N+I+ E ++
Sbjct: 84 NQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGYNQISVEGAKYIS 143
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
G+ +L SL + IG EG ++ + L S+N+ I + + ++G+ SL SLN+
Sbjct: 144 GMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTSLNIGY 203
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QI G ++ + LT L++ I+ G+ Y+ K+L SL I + G K+I
Sbjct: 204 NQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEGSKYIS 263
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
++ LT LN+ N + + + ISG+ L SLN+ ++I G +++ +K L SL +
Sbjct: 264 EMKQLTSLNIGYN-EIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNI 321
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 163/330 (49%), Gaps = 15/330 (4%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L SLD + +I G +++ + LTSL +N I +G K + + +L LD
Sbjct: 4 LTSLDMH-SNEIGVEGSKYISEMKQLTSLDIY-SNEIGVEGAKYISEMKSLTSLD----- 56
Query: 143 RIHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
IH + ++G + +L SLNI + N I K +S + L SL I +++ G
Sbjct: 57 -IHSNEIGVEGSKYISEMKQLTSLNIGY-NQIGVEGSKYISEMNQLTSLDIHSNEIGVEG 114
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
Y+ +++LT LN+ ++ +S + SL L + Q+ +G + S++ L
Sbjct: 115 SKYISEMKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTS 174
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316
LN+G NEI +E ++ G+ +L SLN+ IG EG ++ + L S+N+ IS
Sbjct: 175 LNIGHNEIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEG 234
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+ ++G+ SL SLN+ QI G ++ + LT L++ I GA Y+ K+L S
Sbjct: 235 SKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTS 294
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L I + G K+I ++ LT LN+ N
Sbjct: 295 LNIGYNQIGVEGSKYISEMKQLTSLNIGHN 324
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 143/274 (52%), Gaps = 1/274 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL + +++ G Y+ +++LT L++ + +S + SL L+++
Sbjct: 1 MNQLTSLDMHSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ +G + S++ L LN+G+N+I E ++ + L SL++ S IG EG ++
Sbjct: 61 EIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISE 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+N+ + IS + ++G+ SL SL + QI G ++ + LT L++
Sbjct: 121 MKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHN 180
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I + GA Y+ K+L SL I + G K+I ++ LT LN+ N ++ + + IS
Sbjct: 181 EIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHN-EISVEGSKYIS 239
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
G+ L SLN+ ++I G +++ +K L SL +
Sbjct: 240 GMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNI 273
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 154/303 (50%), Gaps = 15/303 (4%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+ +++ G ++ + +L SLD + +I G +++ + LTSL+ N
Sbjct: 28 LTSLDIYSNEIGVEGAKYISEMKSLTSLDIH-SNEIGVEGSKYISEMKQLTSLNIGY-NQ 85
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLESLNIKWCNCITDSD 172
I +G K + + L LD IH + ++G + +L SLNI + N I+
Sbjct: 86 IGVEGSKYISEMNQLTSLD------IHSNEIGVEGSKYISEMKQLTSLNIGY-NQISVEG 138
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
K +SG+ +L SL I +++ G Y+ +++LT LN+ + +S + SL
Sbjct: 139 AKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTS 198
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN+ Q+ +G + S++ L LN+G NEI+ E ++ G+ +L SLN+ IG EG
Sbjct: 199 LNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEG 258
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
++ + L S+N+ + I + ++G+ SL SLN+ QI G ++ + LT
Sbjct: 259 SKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTS 318
Query: 353 LDL 355
L++
Sbjct: 319 LNI 321
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 141/285 (49%), Gaps = 3/285 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ SL S+D+ +++ G ++ + L SL+ + QI G +++ ++ LTSL
Sbjct: 47 SEMKSLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGYN-QIGVEGSKYISEMNQLTSLDI 105
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I +G K + + L L++ G + G+ L SL I + N I
Sbjct: 106 H-SNEIGVEGSKYISEMKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGY-NQIGVEGS 163
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ + G Y+ G++ LT LN+ + +S + L L
Sbjct: 164 KYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSL 223
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N+ ++S +G + S + SL LN+G+N+I E ++ + L SLN+ IG EG
Sbjct: 224 NIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGA 283
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
++G+ +L S+N+ + I + ++ + L SLN+ +I +
Sbjct: 284 KYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGE 328
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 123/233 (52%), Gaps = 1/233 (0%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+++ ++ +G + S++ L L++ NEI E ++ + +L SL++ S IG EG
Sbjct: 7 LDMHSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSNEIGVEG 66
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
++ + L S+N+ + I + ++ ++ L SL++ + +I G ++ + LT
Sbjct: 67 SKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISEMKQLTS 126
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L++ +I+ GA Y+ K+L SL I + G K+I ++ LT LN+ N + ++
Sbjct: 127 LNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHN-EIGEE 185
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ ISG+ L SLN+ ++I G +++ +K L SL + +++ K +
Sbjct: 186 GAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYI 238
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 119/238 (50%), Gaps = 3/238 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L S+D+ +++ G ++ + L SL+ + QIS G +++ G+ +LTSL +
Sbjct: 95 SEMNQLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGYN-QISVEGAKYISGMKSLTSL-Y 152
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L L++ G + G+ L SLNI + N I
Sbjct: 153 IGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTSLNIGY-NQIGVEGS 211
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I ++++ G Y+ G++ LT LN+ + +S + L L
Sbjct: 212 KYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSL 271
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
N+ ++ +G + S + SL LN+G+N+I E ++ + L SLN+ IG+E
Sbjct: 272 NIGYNEIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEE 329
>gi|290984863|ref|XP_002675146.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284088740|gb|EFC42402.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 458
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 171/355 (48%), Gaps = 8/355 (2%)
Query: 81 SNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
N+QSL+ N D LE + L+NLT S RN +G K L L L++E
Sbjct: 102 QNIQSLNVNQYFNTFDCHVLEFMGSLNNLTIRSKIRN-----EGAKCIPQLKQLTNLNVE 156
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+ G+ L L + NI+ N I D K +S ++ L + I + + + G Y
Sbjct: 157 DNKIGNEGVKCFSELKHLTNFNIR-NNKIMDEGAKYISQMSQLTCMNIGNNNIGEPGAEY 215
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
+ +++LT LN+ G + +S + L +L++ L + G + S++ L L +
Sbjct: 216 ISQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYNNLGNLGSQYLSQMKKLTYLFI 275
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
N + + + L L L + + GIG G +T + L +++ I + R
Sbjct: 276 EGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEMKQLTDLSIGGAKIGEEGARH 335
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L ++ L +LN+ ++ G ++ + LT LD+F I D GA ++ KNLR L+I
Sbjct: 336 LKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNNIEDEGAKHISELKNLRKLDI 395
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
+TD G K++ L+ LT L+++ N NL+D+ + I+ +T L L++ + I+
Sbjct: 396 GRNNITDEGAKYVSQLNQLTHLSITYN-NLSDEGAKYINTMTQLTKLDIGGNAIS 449
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 151/306 (49%), Gaps = 6/306 (1%)
Query: 154 LMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L ++SLN+ ++ N D L + +L +L I SK+ + G + L++LT LN+E
Sbjct: 101 LQNIQSLNVNQYFNTF---DCHVLEFMGSLNNLTIR-SKIRNEGAKCIPQLKQLTNLNVE 156
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ + S L L N+ ++ D+G + S++ L +N+G N I + ++
Sbjct: 157 DNKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYISQMSQLTCMNIGNNNIGEPGAEYI 216
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+ L +LN+ IGD+G +++ + L +++ + + + + L+ + L L ++
Sbjct: 217 SQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYNNLGNLGSQYLSQMKKLTYLFIE 276
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
++ + G ++ L LT L + I +GA Y+ K L L I G + + G +H+
Sbjct: 277 GNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEMKQLTDLSIGGAKIGEEGARHL 336
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
K ++ LT LN+ N L + IS + L SL++ + I G +H+ LKNLR L +
Sbjct: 337 KTMNQLTNLNIGYN-RLGSIGAKFISEMKQLTSLDIFYNNIEDEGAKHISELKNLRKLDI 395
Query: 453 ESCKVT 458
+T
Sbjct: 396 GRNNIT 401
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 147/311 (47%), Gaps = 6/311 (1%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LK +NL D +I + G++ L +LT+ + R NN I +G K + + L
Sbjct: 146 QLKQLTNLNVEDN----KIGNEGVKCFSELKHLTNFNIR-NNKIMDEGAKYISQMSQLTC 200
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
+++ G + + +L +LNI N I D + +S + L L I + + +
Sbjct: 201 MNIGNNNIGEPGAEYISQMKQLTNLNIHG-NRIGDKGARHISEMEGLTHLDIGYNNLGNL 259
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G YL ++KLT L +EG + +S L L L + + +G +++ L
Sbjct: 260 GSQYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEMKQLT 319
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L++G +I +E HLK + L +LN+ +G G ++ + L S+++ + I D
Sbjct: 320 DLSIGGAKIGEEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNNIEDE 379
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+ ++ L +L+ L++ ITD G ++ L LTHL + ++D GA Y+ L
Sbjct: 380 GAKHISELKNLRKLDIGRNNITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYINTMTQLT 439
Query: 376 SLEICGGGLTD 386
L+I G ++D
Sbjct: 440 KLDIGGNAISD 450
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 112/242 (46%), Gaps = 11/242 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ L ++++ G+ + D G H+ + L LD + + + G ++L + LT L F
Sbjct: 217 SQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYN-NLGNLGSQYLSQMKKLTYL-F 274
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKWCNCIT 169
N + G K + L L L C +G G + + +L L+I I
Sbjct: 275 IEGNRLDENGAKFVSELKQLTIL----CIGANGIGPNGARYITEMKQLTDLSIGGAK-IG 329
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ + L + L +L I +++ G ++ +++LT L++ + +S L +
Sbjct: 330 EEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNNIEDEGAKHISELKN 389
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L L++ R ++D+G + S++ L L++ +N ++DE ++ +T L L++ I
Sbjct: 390 LRKLDIGRNNITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYINTMTQLTKLDIGGNAIS 449
Query: 290 DE 291
D+
Sbjct: 450 DD 451
>gi|46445968|ref|YP_007333.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399609|emb|CAF23058.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 616
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 143/264 (54%), Gaps = 16/264 (6%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L + E + + N I + + LT++ L + ++TD+ +A+L L L LNL G
Sbjct: 293 LTEFEKIINYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSG 352
Query: 214 --CPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECL 269
+T A L L+ L +L +LNL+ C +L+DDG + +L+ LNL N++TD L
Sbjct: 353 DMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGL 412
Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLS-----FTGISDGSLRKLAGL 323
HL+ L NL+ LNL C + D GL +LT L NL+ ++LS FTG L LA L
Sbjct: 413 AHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTG---AGLAYLAPL 469
Query: 324 SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI-C 380
L+ LNL ++TD GL LT L L HLDL G +TD+G +L + NL+ L + C
Sbjct: 470 IDLQYLNLCCCNELTDIGLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRC 529
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLS 404
LT G+ H+ L +L L LS
Sbjct: 530 CDNLTKTGLMHLTSLVNLRQLVLS 553
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 149/295 (50%), Gaps = 48/295 (16%)
Query: 11 FNELVYSRCLTEVSLEAFRDCALQDLCLGQY-PGVNDKWMDVIASQGSSLLSVDLSG--S 67
F+E Y LT++ L A + L D L P VN L ++LSG S
Sbjct: 312 FSEYAY---LTDIHLLALKSWELTDARLAHLAPLVN-------------LRHLNLSGDMS 355
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL NLQ L+ ++C +++D GL HLR L NL L+ N +T G+
Sbjct: 356 NLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHL 415
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSL 185
L+NL L+L +C ++ GL +L L+ L+ L++ WC T + + L+ L +L+ L
Sbjct: 416 RPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYL 475
Query: 186 QI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDD 243
+ C+++TD G+ +L L L L+L GC +T A L L++L +L +LNL RC
Sbjct: 476 NLCCCNELTDIGLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNL-RC----- 529
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD--SCGIGDEGLVNL 296
C+ +K G L+HL L NL L L S + + GL +L
Sbjct: 530 -CDNLTKTG----------------LMHLTSLVNLRQLVLSWYSPDLNEAGLAHL 567
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 134/266 (50%), Gaps = 34/266 (12%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFSKIG 252
S AYL + LL L+ +T A L L+ L +L +LNL + L+D G + +
Sbjct: 313 SEYAYLTDIH---LLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLV 369
Query: 253 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFT 310
+L+ LNL + +++TD+ L HL+ L NL+ LNL C + D GL +L L NL+ +NLS
Sbjct: 370 NLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLS-- 427
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA--AYL 368
++TD GLA LT L L HLDL + +GA AYL
Sbjct: 428 ---------------------KCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYL 466
Query: 369 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
+L+ L +C LTD G+ H+ L +L L+LS NLTD L ++ L L LN
Sbjct: 467 APLIDLQYLNLCCCNELTDIGLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLN 526
Query: 428 VS-NSRITSAGLRHLKPLKNLRSLTL 452
+ +T GL HL L NLR L L
Sbjct: 527 LRCCDNLTKTGLMHLTSLVNLRQLVL 552
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 116/217 (53%), Gaps = 8/217 (3%)
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL--DSCGIGDEGLVNLTGLTNLES 304
+++ + + +L L E+TD L HL L NL LNL D + D GL +LT L NL+
Sbjct: 314 EYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQH 373
Query: 305 INLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARIT 361
+NL + ++D L L L +L+ LNL ++TD GLA L L L HL+L ++T
Sbjct: 374 LNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLT 433
Query: 362 DSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
D+G A+L NL+ L++ C T AG+ ++ L L LNL LTD L ++
Sbjct: 434 DAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCCNELTDIGLMHLTP 493
Query: 420 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L L L++S +T AGL HL L NL+ L L C
Sbjct: 494 LVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRCC 530
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 108/208 (51%), Gaps = 7/208 (3%)
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS--FTGI 312
K++N N I LT++ L L S + D L +L L NL +NLS + +
Sbjct: 298 KIINYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNL 357
Query: 313 SDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRN 370
+D L L L +L+ LNL ++TD GLA L SL L HL+L ++TD+G A+LR
Sbjct: 358 TDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRP 417
Query: 371 FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ-NCNLTDKTLELISGLTGLVSLNV 428
NL+ L + LTDAG+ H+ L +L L+LS N T L ++ L L LN+
Sbjct: 418 LVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNL 477
Query: 429 SN-SRITSAGLRHLKPLKNLRSLTLESC 455
+ +T GL HL PL NL+ L L C
Sbjct: 478 CCCNELTDIGLMHLTPLVNLQHLDLSGC 505
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 87/166 (52%), Gaps = 5/166 (3%)
Query: 297 TGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+ LT E I F +G + + A L+ + L L + ++TD LA L L L HL+L
Sbjct: 291 SHLTEFEKIINYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNL 350
Query: 356 FG--ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
G + +TD+G A+L NL+ L + LTD G+ H++ L +L LNL LTD
Sbjct: 351 SGDMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDA 410
Query: 413 TLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKV 457
L + L L LN+S ++T AGL HL PL NL+ L L C +
Sbjct: 411 GLAHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPL 456
>gi|406830019|ref|ZP_11089613.1| hypothetical protein SpalD1_00225 [Schlesneria paludicola DSM
18645]
Length = 509
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 175/354 (49%), Gaps = 25/354 (7%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++L+G+D+TD+ L+D +L LD +ISD +E L L NL L +
Sbjct: 119 ALGTLNLNGTDITDADFSELRDLRHLSLLDLG-GTRISDASIEGLSQLKNLKEL-WIDGT 176
Query: 118 AITAQGMKAF-AGLIN-LVKLD-------LERCTRIHGGLVNLKGLMKLESLNIKW---- 164
IT G+++ L N +V D +E + GG+ + + + + +
Sbjct: 177 EITDAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEVGFGGFL 236
Query: 165 ---CNCITDSDMKPLSGLTNLKSLQISCSK-------VTDSGIAYLKGLQKLTLLNLEGC 214
+ + + +L++LQ+ S T G + L LT L + G
Sbjct: 237 DVGPKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADGWKEISELNNLTRLTIIGI 296
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+T A L +S L L L L ++++ G ++ K+ +L L L ++TD L L+G
Sbjct: 297 EITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRG 356
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L L++L+L++ I DEGL + LT+L +++ T I+D L+ L GLSSLK+L L +
Sbjct: 357 LQRLDTLSLNNNPISDEGLRQVGALTSLTFLSVPSTEITDNGLKGLRGLSSLKNLCLAST 416
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
+I+D GL L L L LDL G R+T +G LR ++L SL + ++D G
Sbjct: 417 RISDDGLKGLIGLNNLEQLDLAGTRVTGTGVGPLRELESLHSLGLSNTQISDEG 470
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 163/324 (50%), Gaps = 33/324 (10%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I+D+ ++ LS L NLK L I +++TD+G+ LK ++ + P + ++++ +L
Sbjct: 154 ISDASIEGLSQLKNLKELWIDGTEITDAGVQSLKEALPNAIVG-KDAPDESQAIETIRSL 212
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--------ECLVHLKGLTNLE 279
G G + + V+ +GF D E L +K +L
Sbjct: 213 GG--------------GVTRDEAVAGRPVIEVGFGGFLDVGPKTTIEEVLSAVKQFRSLR 258
Query: 280 SLNLDSCGIGDEGLV-------NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+L L S G GL+ ++ L NL + + I+D L++++ LS L+SL L
Sbjct: 259 TLQLGSSGDASHGLLATADGWKEISELNNLTRLTIIGIEITDAGLKEISRLSQLESLRLI 318
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+IT+ G+ + L LT+L LF ++TD+G LR + L +L + ++D G++ +
Sbjct: 319 NLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRGLQRLDTLSLNNNPISDEGLRQV 378
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L+SLT L++ + +TD L+ + GL+ L +L ++++RI+ GL+ L L NL L L
Sbjct: 379 GALTSLTFLSVP-STEITDNGLKGLRGLSSLKNLCLASTRISDDGLKGLIGLNNLEQLDL 437
Query: 453 ESCKVTANDIKRLQSRDLPNLVSF 476
+VT + L R+L +L S
Sbjct: 438 AGTRVTGTGVGPL--RELESLHSL 459
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 145/315 (46%), Gaps = 51/315 (16%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
LK L LNL G +T A L L L L+L ++SD E S++ +LK L +
Sbjct: 114 LKSFNALGTLNLNGTDITDADFSELRDLRHLSLLDLGGTRISDASIEGLSQLKNLKELWI 173
Query: 260 GFNEITDECLVHLK---------------------------GLTNLESL---NLDSCGIG 289
EITD + LK G+T E++ + G G
Sbjct: 174 DGTEITDAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEVGFG 233
Query: 290 -----------DEGLVNLTGLTNLESINLSFTG--------ISDGSLRKLAGLSSLKSLN 330
+E L + +L ++ L +G +DG ++++ L++L L
Sbjct: 234 GFLDVGPKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADG-WKEISELNNLTRLT 292
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ +ITD GL ++ L+ L L L +IT+ G + KNL +L + LTDAG+
Sbjct: 293 IIGIEITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLN 352
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
++ L L L+L+ N ++D+ L + LT L L+V ++ IT GL+ L+ L +L++L
Sbjct: 353 QLRGLQRLDTLSLNNNP-ISDEGLRQVGALTSLTFLSVPSTEITDNGLKGLRGLSSLKNL 411
Query: 451 TLESCKVTANDIKRL 465
L S +++ + +K L
Sbjct: 412 CLASTRISDDGLKGL 426
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 130/294 (44%), Gaps = 52/294 (17%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L S +ALG+L NLN ++D + + L +L+LG I+D + L L NL+
Sbjct: 114 LKSFNALGTL---NLNGTDITDADFSELRDLRHLSLLDLGGTRISDASIEGLSQLKNLKE 170
Query: 281 LNLDSCGIGDEGLVNLT---------------------------GLTNLES------INL 307
L +D I D G+ +L G+T E+ I +
Sbjct: 171 LWIDGTEITDAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEV 230
Query: 308 SFTGISD--------GSLRKLAGLSSLKSLNL----DARQ---ITDTGLAALTSLTGLTH 352
F G D L + SL++L L DA T G ++ L LT
Sbjct: 231 GFGGFLDVGPKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADGWKEISELNNLTR 290
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L + G ITD+G + L SL + +T+ G+K I L +LT L L + LTD
Sbjct: 291 LTIIGIEITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLF-DVQLTDA 349
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
L + GL L +L+++N+ I+ GLR + L +L L++ S ++T N +K L+
Sbjct: 350 GLNQLRGLQRLDTLSLNNNPISDEGLRQVGALTSLTFLSVPSTEITDNGLKGLR 403
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 52/249 (20%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
LK L +LNL+ I D L L +L ++L T ISD S+ L+ L +LK L +
Sbjct: 114 LKSFNALGTLNLNGTDITDADFSELRDLRHLSLLDLGGTRISDASIEGLSQLKNLKELWI 173
Query: 332 DARQITDTGLAALTSL------------------------TGLTHLDLFGAR-------- 359
D +ITD G+ +L G+T + R
Sbjct: 174 DGTEITDAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEVGFG 233
Query: 360 -ITDSGA--------AYLRNFKNLRSLEICGGG-------LTDAGVKHIKDLSSLTLLNL 403
D G + ++ F++LR+L++ G T G K I +L++LT L +
Sbjct: 234 GFLDVGPKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADGWKEISELNNLTRLTI 293
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA---N 460
+TD L+ IS L+ L SL + N +IT+ G++ + LKNL +L L ++T N
Sbjct: 294 I-GIEITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLN 352
Query: 461 DIKRLQSRD 469
++ LQ D
Sbjct: 353 QLRGLQRLD 361
>gi|290980071|ref|XP_002672756.1| predicted protein [Naegleria gruberi]
gi|284086335|gb|EFC40012.1| predicted protein [Naegleria gruberi]
Length = 385
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 173/353 (49%), Gaps = 3/353 (0%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D++ + + D G + +L SL+ + QI G + + G+ +L SLS
Sbjct: 15 SEMKHLTSLDIADNQIGDEGSKFISGMKHLTSLNIDRN-QIGVEGAKLISGMKSLISLSI 73
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I +G K +G+ +L LD+ R G ++ + +L SLNI + N I
Sbjct: 74 G-DNQIGVEGAKLISGMKHLTSLDINRNQIGVEGAKSISRMKQLTSLNI-YYNQIGAEGA 131
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +SG+ L SL I +++ Y+ +++LT L++ + S+S + L L
Sbjct: 132 KSISGMKQLTSLDIGGNQIGVEESKYISEMKQLTSLDIYNNQIGVEGAKSISGMKQLTSL 191
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N+ ++ +G + S++ L LN+G NEI E + + +L SLN+ IGDEG
Sbjct: 192 NIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDEGS 251
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
++ + L S+++ + I + ++ + L SL + QI G ++ + LT L
Sbjct: 252 KYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGVEGAKFISEMKLLTSL 311
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
D+ +I D G+ ++ K+L SL + + D G K I + LT L + N
Sbjct: 312 DIADNQIGDEGSKFISEMKSLTSLNVNSNQIGDEGAKLISGMKQLTSLKIYYN 364
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 158/307 (51%), Gaps = 2/307 (0%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+ G+ L SLNI N I K +SG+ +L SL I +++ G + G++ LT L+
Sbjct: 38 ISGMKHLTSLNIDR-NQIGVEGAKLISGMKSLISLSIGDNQIGVEGAKLISGMKHLTSLD 96
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ + S+S + L LN+ Q+ +G + S + L L++G N+I E
Sbjct: 97 INRNQIGVEGAKSISRMKQLTSLNIYYNQIGAEGAKSISGMKQLTSLDIGGNQIGVEESK 156
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
++ + L SL++ + IG EG +++G+ L S+N+ F I + ++ + L SLN
Sbjct: 157 YISEMKQLTSLDIYNNQIGVEGAKSISGMKQLTSLNIGFNRIGVEGSKLISEMKQLTSLN 216
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ + +I G + + LT L+++ I D G+ Y+ K L SL+I + G K
Sbjct: 217 IGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDEGSKYISEMKQLTSLDIYYNEIGVEGAK 276
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+I ++ LT L +S N + + + IS + L SL++++++I G + + +K+L SL
Sbjct: 277 YISEMKQLTSLGISDN-QIGVEGAKFISEMKLLTSLDIADNQIGDEGSKFISEMKSLTSL 335
Query: 451 TLESCKV 457
+ S ++
Sbjct: 336 NVNSNQI 342
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 150/313 (47%), Gaps = 17/313 (5%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+ + + + G + +L SLD N QI G + + + LTSL+ N
Sbjct: 67 SLISLSIGDNQIGVEGAKLISGMKHLTSLDINRN-QIGVEGAKSISRMKQLTSLNIYYNQ 125
Query: 118 AITAQGMKAFAGLINLVKLDL-------ERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
I A+G K+ +G+ L LD+ E I + +L SL+I + N I
Sbjct: 126 -IGAEGAKSISGMKQLTSLDIGGNQIGVEESKYISE-------MKQLTSLDI-YNNQIGV 176
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K +SG+ L SL I +++ G + +++LT LN+ + + + L
Sbjct: 177 EGAKSISGMKQLTSLNIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHL 236
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LN+ ++ D+G + S++ L L++ +NEI E ++ + L SL + IG
Sbjct: 237 TSLNIYYNEIGDEGSKYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGV 296
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
EG ++ + L S++++ I D + ++ + SL SLN+++ QI D G ++ + L
Sbjct: 297 EGAKFISEMKLLTSLDIADNQIGDEGSKFISEMKSLTSLNVNSNQIGDEGAKLISGMKQL 356
Query: 351 THLDLFGARITDS 363
T L ++ +I ++
Sbjct: 357 TSLKIYYNQIGET 369
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 3/242 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+ G+ + ++ + L SLD + QI G + + G+ LTSL+ N
Sbjct: 140 LTSLDIGGNQIGVEESKYISEMKQLTSLDI-YNNQIGVEGAKSISGMKQLTSLNIGFNR- 197
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G K + + L L++ G + + L SLNI + N I D K +S
Sbjct: 198 IGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNI-YYNEIGDEGSKYISE 256
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I +++ G Y+ +++LT L + + +S + L L++
Sbjct: 257 MKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGVEGAKFISEMKLLTSLDIADN 316
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
Q+ D+G + S++ SL LN+ N+I DE + G+ L SL + IG+ L+++
Sbjct: 317 QIGDEGSKFISEMKSLTSLNVNSNQIGDEGAKLISGMKQLTSLKIYYNQIGETLLMSVIS 376
Query: 299 LT 300
+T
Sbjct: 377 IT 378
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
++ K+L SL+I + D G K I + LT LN+ +N + + +LISG+ L+SL
Sbjct: 13 FISEMKHLTSLDIADNQIGDEGSKFISGMKHLTSLNIDRN-QIGVEGAKLISGMKSLISL 71
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKV---TANDIKRLQ 466
++ +++I G + + +K+L SL + ++ A I R++
Sbjct: 72 SIGDNQIGVEGAKLISGMKHLTSLDINRNQIGVEGAKSISRMK 114
>gi|330842680|ref|XP_003293301.1| hypothetical protein DICPUDRAFT_158109 [Dictyostelium purpureum]
gi|325076385|gb|EGC30175.1| hypothetical protein DICPUDRAFT_158109 [Dictyostelium purpureum]
Length = 684
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 179/365 (49%), Gaps = 14/365 (3%)
Query: 49 MDVIASQGSSLLSVDLSGSD-VTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
++ I S G + +DLS + ++ +H + +Q ++F+ CI ++D GLE +
Sbjct: 276 LNQILSSGVRVFKLDLSNQSLIVNNDFLHNCFRYLVEVQDVNFSNCINMTDYGLEVFKNE 335
Query: 106 S---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
NL L R N +T G K L+NL +L L + G+ LK L+ L++L++
Sbjct: 336 KFHRNLRVLDLRHNRNLTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVNLKTLDV 395
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGC-PVTAAC 220
C ITD+ M +S + L L +S +++TD I+ + L + L L C +T
Sbjct: 396 SRCK-ITDNAMVTISLFSKLTLLNLSETQITDVAISNIHQILTNIQYLYLSNCQKLTNKS 454
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLE 279
L L+ + L++ Q+S +G ++ +L L L + D+ +V+L LT L+
Sbjct: 455 LFFLTYFSKMRLLSITGTQISLNGFVHLKRLPNLLYLELPNRYCLNDQTIVYLNSLTKLK 514
Query: 280 SLNL-DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L+L D I + L L LE + L+ T + D S+ + + SL+ L+LD IT
Sbjct: 515 KLDLTDYTYIT--SIEPLDNLKYLEELLLANTRVGDSSVPAIKKMKSLEVLSLDRTDITS 572
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
G+A L L L L L +I D YL K+LR L I +T ++ +KD+++L
Sbjct: 573 AGVAGLVDL-NLKSLSLMKTKIDDDSINYLSEIKSLRQLNISHNNITHKNIEKLKDITNL 631
Query: 399 TLLNL 403
L+L
Sbjct: 632 NSLDL 636
>gi|168704615|ref|ZP_02736892.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 294
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 130/250 (52%), Gaps = 2/250 (0%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
GS+ L L +++D ++ + L VL+L +++D L L L L L
Sbjct: 47 GSVIELWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTK 106
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ D GL ++ LT+LE + L T ++D + +L L L L L +ITD + L
Sbjct: 107 VTDAGLKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKL 166
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
GLT L L GA+IT G + SL + G +++AG+K I SL +L LS+ C
Sbjct: 167 KGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSE-C 225
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+TD L+ ++ L L +L++ +++T AG++ L LK L+ L L S +VT +K +++
Sbjct: 226 KITDGGLKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285
Query: 468 RDLPNLVSFR 477
LP + F+
Sbjct: 286 A-LPKCLVFK 294
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 1/234 (0%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L LEG + A L L+A L L+L Q+SD G ++ + L L L ++TD
Sbjct: 52 LWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAG 111
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L + LT+LE L LD + D G+ L L L + L T I+D + + +A L L +
Sbjct: 112 LKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTT 171
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L LD +IT GL + ++ G L L G I+++G + FK+LR L++ +TD G
Sbjct: 172 LRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGG 231
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+K + L LT L+L + +TD ++ ++ L L L+++++++T AG++ ++
Sbjct: 232 LKELAALDKLTTLHL-EKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIR 284
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 117/227 (51%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D+D+K L+ +L L + ++V+D+G+ L + LT L L VT A L ++ L
Sbjct: 59 IADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAGLKDVAKL 118
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L L+ ++D G + + L L L +ITD ++ L L +L LD
Sbjct: 119 THLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTTLRLDGAK 178
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
I GL + + S+ LS T IS+ L+++A SL+ L L +ITD GL L +L
Sbjct: 179 ITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGGLKELAAL 238
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
LT L L ++TD+G L + K L+ L + +TDAGVK I++
Sbjct: 239 DKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 116/238 (48%), Gaps = 7/238 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++ + L G+ + D+ L L +L L + Q+SD GL+ L LT L R
Sbjct: 48 SVIELWLEGTKIADADLKELAAFKHLAVLSL-YDTQVSDAGLKELTSSKGLTELLLSRTK 106
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITDSDMKP 175
+T G+K A L +L KL L+ G+ L L +L L W ITD+ K
Sbjct: 107 -VTDAGLKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSEL---WLMGTKITDAAFKN 162
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
++ L L +L++ +K+T G+ + + L L G ++ A L ++A SL L L
Sbjct: 163 VAKLKGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQL 222
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ C+++D G ++ + + L L+L ++TD + L L L+ L+L S + D G+
Sbjct: 223 SECKITDGGLKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGV 280
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G+ +TD+ ++ L +L + +I+ GL+ + + SL + I+ G
Sbjct: 150 LMGTKITDAAFKNVAKLKGLTTLRLDGA-KITGVGLKQVAAIDGFHSL-YLSGTDISEAG 207
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K A +L L L C GGL L L KL +L+++ +TD+ +K L+ L LK
Sbjct: 208 LKEIAAFKSLRILQLSECKITDGGLKELAALDKLTTLHLEKTQ-VTDAGVKSLASLKKLK 266
Query: 184 SLQISCSKVTDSGIAYLK 201
L ++ ++VTD+G+ ++
Sbjct: 267 VLHLTSTQVTDAGVKTIR 284
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S+ LSG+D++++GL + +L+ L + C +I+DGGL+ L L LT+L + +T
Sbjct: 195 SLYLSGTDISEAGLKEIAAFKSLRILQLSEC-KITDGGLKELAALDKLTTLHLEKTQ-VT 252
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
G+K+ A L L L L G+ ++
Sbjct: 253 DAGVKSLASLKKLKVLHLTSTQVTDAGVKTIR 284
>gi|42567079|ref|NP_194115.3| leucine-rich repeat-containing protein [Arabidopsis thaliana]
gi|20466546|gb|AAM20590.1| unknown protein [Arabidopsis thaliana]
gi|22136448|gb|AAM91302.1| unknown protein [Arabidopsis thaliana]
gi|51971383|dbj|BAD44356.1| putative protein [Arabidopsis thaliana]
gi|332659411|gb|AEE84811.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]
Length = 597
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 128/445 (28%), Positives = 199/445 (44%), Gaps = 93/445 (20%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCIT 169
+ R +++ A+ M G +NL+ L+L C RI+ L + GL L L++ C +T
Sbjct: 66 IDLRGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRCFKVT 125
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D+ MK L + NLK L IS + VT+ GI+ L L+KL+LL+L G PVT L SL AL
Sbjct: 126 DAGMKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQALTK 185
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L YL++ +++ G K +L LNL + IT + +LE L++++C I
Sbjct: 186 LEYLDIWGSNVTNQGAVSILKFSNLSFLNLSWTSIT-----QTPNIPHLECLHMNTCTIV 240
Query: 290 DEGLVN----------------------------------------------LTGLTNLE 303
E + L + NLE
Sbjct: 241 SEPKTHSSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNLE 300
Query: 304 SINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAAL------------------ 344
++LS T D S+ +A + +LK+LN+ QIT +G+ L
Sbjct: 301 HLDLSSTAFGDDSVGFVACVGENLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTFVD 360
Query: 345 --------TSLTGLTHLDL-------FGARIT-----DSGAAYLRNFKNLRSLEICGGGL 384
T++ + LDL F I+ + A L++ +L +L + L
Sbjct: 361 DLSILLISTTMPCIKALDLGMNSTLGFYYLISPQEEKEKSLAALQSLTSLETLSLEHPYL 420
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
D + + L+ LT L+L+ + +LTD TL +S L LVSL V + +TS GL +P
Sbjct: 421 GDKALSGLSSLTGLTHLSLT-STSLTDSTLHHLSSLPNLVSLGVRDGVLTSNGLEKFRPP 479
Query: 445 KNLRSLTLESCK-VTANDIKRLQSR 468
LR+L L+ C +T +DI L R
Sbjct: 480 NRLRTLDLQGCWLLTKDDIAGLCKR 504
>gi|149918767|ref|ZP_01907254.1| hypothetical protein PPSIR1_31833 [Plesiocystis pacifica SIR-1]
gi|149820368|gb|EDM79784.1| hypothetical protein PPSIR1_31833 [Plesiocystis pacifica SIR-1]
Length = 541
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 143/311 (45%), Gaps = 25/311 (8%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---------------- 188
H ++ + L+SL + +T+ + PL GL +L ++ S
Sbjct: 230 HNTMLRVAKAKSLQSLAV-IDTALTNYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRDLP 288
Query: 189 -------CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
C + D G+ L+ L+ L +L LE VT+A L L+ +L L L C L
Sbjct: 289 IDELICDCPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLD 348
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
+G + + L+ L +G + D L L +L L L G GD L L N
Sbjct: 349 SEGFTALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFGDRAAQELAPLVN 408
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
LE ++L T +SD L LAG+ L+ L L ++T GL L L+ L L+L +
Sbjct: 409 LERLDLGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVV 468
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
D G A+L LR L + +TD GV H+ LS L LNL+ N +T + +E++S L
Sbjct: 469 DEGVAHLAKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLA-NTVVTSEGVEVLSALP 527
Query: 422 GLVSLNVSNSR 432
L +N++ +R
Sbjct: 528 RLEVVNLAGTR 538
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 3/244 (1%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D GL L+ LQ L+ ++ GL HL L L+ R + + ++G A A L
Sbjct: 301 DRGLFMLRYLEGLQVLELERS-AVTSAGLVHLAENPALEDLTLRGCD-LDSEGFTALAAL 358
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
L +L + + + G L L+ L L + + D + L+ L NL+ L + +
Sbjct: 359 PRLRRLIVGPASLLDGKAEGLGLLVSLRELELG-LDGFGDRAAQELAPLVNLERLDLGNT 417
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
V+D G+ +L G+ +L L L VT L+ L L +L L L+ + D+G +K
Sbjct: 418 AVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVAHLAK 477
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+G+L+ L L ITD + HL L++LE LNL + + EG+ L+ L LE +NL+ T
Sbjct: 478 LGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVNLAGT 537
Query: 311 GISD 314
D
Sbjct: 538 RARD 541
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 121/244 (49%), Gaps = 7/244 (2%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+G+ L L L+LER GLV+L LE L ++ C+ ++ L+ L
Sbjct: 302 RGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEG-FTALAALPR 360
Query: 182 LKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L+ L + + + D G+ L L++L L L+G AA L+ L +L L+L
Sbjct: 361 LRRLIVGPASLLDGKAEGLGLLVSLRELEL-GLDGFGDRAA--QELAPLVNLERLDLGNT 417
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+SD+G E + + L+ L L +T L HL+GL+ LE L LD + DEG+ +L
Sbjct: 418 AVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVAHLAK 477
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L L + L T I+D + LA LS L+ LNL +T G+ L++L L ++L G
Sbjct: 478 LGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVNLAGT 537
Query: 359 RITD 362
R D
Sbjct: 538 RARD 541
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/355 (25%), Positives = 140/355 (39%), Gaps = 46/355 (12%)
Query: 156 KLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG- 213
+L +L I C + + L L+ + I VT + ++ L GL L L +
Sbjct: 122 RLTALRISGCQGAVHAGLSAFGARLRELELVDIELDAVTVARLSQLHGLDTLILTRVRAE 181
Query: 214 -------------CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE-------KFSKIGS 253
VT LD SA+ L L + L +G + +K S
Sbjct: 182 AEALNPLARKISPSTVTLRELDKDSAVVELVTLLRDLHHLRLEGAWVGHNTMLRVAKAKS 241
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-----------------------IGD 290
L+ L + +T+ L LKGL +L + G GD
Sbjct: 242 LQSLAVIDTALTNYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRDLPIDELICDCPRFGD 301
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
GL L L L+ + L + ++ L LA +L+ L L + G AL +L L
Sbjct: 302 RGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEGFTALAALPRL 361
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L + A + D A L +LR LE+ G D + + L +L L+L N ++
Sbjct: 362 RRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFGDRAAQELAPLVNLERLDLG-NTAVS 420
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
D+ LE ++G+ L L + ++R+T GL HL+ L L L L+ V + L
Sbjct: 421 DEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVAHL 475
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 44/193 (22%)
Query: 22 EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS 81
E+ L+ F D A Q+L P VN L +DL + V+D GL HL
Sbjct: 389 ELGLDGFGDRAAQELA----PLVN-------------LERLDLGNTAVSDEGLEHLAGMV 431
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L+ L+ + +++ GLEHL+GLS L L + + G+ +L KL R
Sbjct: 432 RLRELELHHT-RVTRHGLEHLQGLSALEILELDHTDVVD-------EGVAHLAKLGALRE 483
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
R+ L ITD + L+ L++L+ L ++ + VT G+ L
Sbjct: 484 LRLDNTL-------------------ITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLS 524
Query: 202 GLQKLTLLNLEGC 214
L +L ++NL G
Sbjct: 525 ALPRLEVVNLAGT 537
>gi|168054406|ref|XP_001779622.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668936|gb|EDQ55533.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 627
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 127/436 (29%), Positives = 211/436 (48%), Gaps = 45/436 (10%)
Query: 18 RCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
R +T+V L A R C L+ L L G+ D + +A+ L ++DLS ++V+D G+
Sbjct: 145 RDVTDVGLSALRRCTELRILGLKYCSGIGDSGIQNVATGCPQLRNIDLSFTEVSDKGVSS 204
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGL-INLV 134
L NL+ L CI ++D GL LR G +L L + + ++++G+ A G+ + L
Sbjct: 205 LALLKNLECLSIISCINVTDKGLSCLRSGCMSLQKLDVAKCSNVSSRGILALTGISLGLQ 264
Query: 135 KLDLERCTRIHG----------------------GLVNLK--GLMKLESLNIKWCNCITD 170
+L+L C +I G VNL G +L+ L++ C +TD
Sbjct: 265 ELNLSYCKKISDVLFASFQKLKTLQVVKLNGCAIGRVNLSLIGCKELKELSLSKCQGVTD 324
Query: 171 -SDMKPLSGLTNLKSLQISCSK-VTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
S + ++ T L+ L ++C + +TD + A + L L +E CP + + L+ +
Sbjct: 325 ASVVGVVTACTGLQKLDLTCCRDITDVALEAIAANCKGLLSLRMENCPSVTS--EGLTLI 382
Query: 228 GSLFY----LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLESL 281
G F L+L L+D+G + S+ +++L LG+ +IT+ L + NL
Sbjct: 383 GRNFAHLEELDLTDSNLNDNGLKSISRCTEMRLLKLGYCMDITNAGLASISSTCKNLREF 442
Query: 282 N-LDSCGIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQIT 337
+ S GI D+G+ + G L+ +NLS+ I+D SL LA L L L L A QIT
Sbjct: 443 DCYRSVGISDDGVAAIARGCDRLKVVNLSYCASITDASLHSLALLRDLVQLELRACSQIT 502
Query: 338 DTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKD 394
G++ + S L LD+ R + D G L R +NLR + + LTD G+ + +
Sbjct: 503 SVGISYIGASCKHLRELDIKRCRFVGDPGVLALSRGCRNLRQINLSYTALTDLGMTAVAN 562
Query: 395 LSSLTLLNLSQNCNLT 410
+S + + L N+T
Sbjct: 563 MSCIQDMKLVHMKNVT 578
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 133/475 (28%), Positives = 227/475 (47%), Gaps = 47/475 (9%)
Query: 44 VNDKWMDVIAS-QGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
V D+ + +A S LLS+ L + +G+ L +CS+LQ +D C QI D +
Sbjct: 70 VTDQCLATVAKFTNSRLLSIKLIRTKGFGIAGVKSLVECSSLQDVDVTHCTQIGDAEVIV 129
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLK-GLMKLES 159
L L +L L +T G+ A L L L+ C+ I G+ N+ G +L +
Sbjct: 130 LSKLKHLQKLKLNSCRDVTDVGLSALRRCTELRILGLKYCSGIGDSGIQNVATGCPQLRN 189
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLK-GLQKLTLLNLEGCP-V 216
+++ + ++D + L+ L NL+ L ISC VTD G++ L+ G L L++ C V
Sbjct: 190 IDLSFTE-VSDKGVSSLALLKNLECLSIISCINVTDKGLSCLRSGCMSLQKLDVAKCSNV 248
Query: 217 TAACLDSLSALG-SLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
++ + +L+ + L LNL+ C ++SD F K+ +L+V+ L I L L G
Sbjct: 249 SSRGILALTGISLGLQELNLSYCKKISDVLFASFQKLKTLQVVKLNGCAIGRVNL-SLIG 307
Query: 275 LTNLESLNLDSC-GIGDEGLVN-LTGLTNLESINLSFT-GISDGSLRKLAG--------- 322
L+ L+L C G+ D +V +T T L+ ++L+ I+D +L +A
Sbjct: 308 CKELKELSLSKCQGVTDASVVGVVTACTGLQKLDLTCCRDITDVALEAIAANCKGLLSLR 367
Query: 323 ------------------LSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDS 363
+ L+ L+L + D GL +++ T + L L + IT++
Sbjct: 368 MENCPSVTSEGLTLIGRNFAHLEELDLTDSNLNDNGLKSISRCTEMRLLKLGYCMDITNA 427
Query: 364 GAAYLRN-FKNLRSLEICGG-GLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGL 420
G A + + KNLR + G++D GV I + L ++NLS ++TD +L ++ L
Sbjct: 428 GLASISSTCKNLREFDCYRSVGISDDGVAAIARGCDRLKVVNLSYCASITDASLHSLALL 487
Query: 421 TGLVSLNV-SNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
LV L + + S+ITS G+ ++ K+LR L ++ C+ + SR NL
Sbjct: 488 RDLVQLELRACSQITSVGISYIGASCKHLRELDIKRCRFVGDPGVLALSRGCRNL 542
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 158/360 (43%), Gaps = 70/360 (19%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
++E L++ C +TD + ++ TN + L I + GIA +K
Sbjct: 58 QVEHLDLSSCVEVTDQCLATVAKFTNSRLLSIKLIRTKGFGIAGVK-------------- 103
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN---EITDECLVHL 272
SL SL +++ C D E + L N ++TD L L
Sbjct: 104 -------SLVECSSLQDVDVTHCTQIGDA-EVIVLSKLKHLQKLKLNSCRDVTDVGLSAL 155
Query: 273 KGLTNLESLNLDSC-GIGDEGLVNL-TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+ T L L L C GIGD G+ N+ TG L +I+LSFT +SD + LA L +L+ L+
Sbjct: 156 RRCTELRILGLKYCSGIGDSGIQNVATGCPQLRNIDLSFTEVSDKGVSSLALLKNLECLS 215
Query: 331 -LDARQITDTGLA--------------------------ALTSLT-GLTHLDL-FGARIT 361
+ +TD GL+ ALT ++ GL L+L + +I+
Sbjct: 216 IISCINVTDKGLSCLRSGCMSLQKLDVAKCSNVSSRGILALTGISLGLQELNLSYCKKIS 275
Query: 362 DSGAAYLRNFKNLRSLEI--CGGG---LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE- 415
D A + K L+ +++ C G L+ G K +K+LS LS+ +TD ++
Sbjct: 276 DVLFASFQKLKTLQVVKLNGCAIGRVNLSLIGCKELKELS------LSKCQGVTDASVVG 329
Query: 416 LISGLTGLVSLNVSNSR-ITSAGLRHLKP-LKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+++ TGL L+++ R IT L + K L SL +E+C ++ L R+ +L
Sbjct: 330 VVTACTGLQKLDLTCCRDITDVALEAIAANCKGLLSLRMENCPSVTSEGLTLIGRNFAHL 389
>gi|290978443|ref|XP_002671945.1| predicted protein [Naegleria gruberi]
gi|284085518|gb|EFC39201.1| predicted protein [Naegleria gruberi]
Length = 381
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 140/277 (50%), Gaps = 4/277 (1%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ NLKSL I + + D + + ++ LTLL++ + +S + L LN+N
Sbjct: 1 MQNLKSLSIVGNGLVDEHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNINDN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D+G + + L +L + + EI +E + L NL LNL IGD+G ++
Sbjct: 61 YILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLHGNFIGDKGASYISE 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG---LAALTSLTGLTHLDL 355
+ NL +N+ T ++ R ++GL +LKSL + QI G ++ + L GLT LD+
Sbjct: 121 MVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLDV 180
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
G I D G YL NL L+I + G++ I + L LN+S N +L +
Sbjct: 181 SGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSN-DLGSSGAK 239
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
LISG++ L SLN+S +R+ G + + + N+ L +
Sbjct: 240 LISGMSNLTSLNISANRLLGEGAKFIGEMHNVTILVI 276
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 173/351 (49%), Gaps = 7/351 (1%)
Query: 100 EHLRGLSNLTSLSF--RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
EHL+ +S + L+ N +G + +G++ L L++ + G + + +L
Sbjct: 17 EHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNINDNYILDEGAKFIGTMKQL 76
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L +K+C I + + +S L NL L + + + D G +Y+ + LT LN+ +T
Sbjct: 77 TLLKMKYCE-IREEGARAISELKNLTFLNLHGNFIGDKGASYISEMVNLTHLNVGSTQLT 135
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK---VLNLGFNEITDECLVHLKG 274
A +S L +L L ++ Q+ G + S + L+ L++ N I D+ + +L
Sbjct: 136 AEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLDVSGNSILDQGVQYLSE 195
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
++NL L++ S +G +G+ ++ G+ L S+N+S + + ++G+S+L SLN+ A
Sbjct: 196 MSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSNDLGSSGAKLISGMSNLTSLNISAN 255
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
++ G + + +T L + I D GA ++ K L+SL ++ G + I +
Sbjct: 256 RLLGEGAKFIGEMHNVTILVIRNNDIGDEGAKFICKMKQLKSLNAVYNRISSKGFESISE 315
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
+ LT L++ N + K + + L L SLNV ++ I GL+ + LK
Sbjct: 316 MKQLTSLDIGYNS-IDSKGAKSVRKLKNLTSLNVRSNMIDDEGLKAIGQLK 365
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/360 (25%), Positives = 163/360 (45%), Gaps = 37/360 (10%)
Query: 69 VTDSGLI--HLKDCSNLQSLDFNFCIQISDG-----GLEHLRGLSNLTSLSFRRNNAITA 121
+ +GL+ HLK+ S ++ L + +S+ G E + G+ LT+L+ +N I
Sbjct: 9 IVGNGLVDEHLKEISEMKGLTL---LDVSENKFGKEGAEKISGMVGLTTLNIN-DNYILD 64
Query: 122 QGMKAFAGLINLVKLDLERCT------------------RIHGGLVNLKGLMKL-ESLNI 162
+G K + L L ++ C +HG + KG + E +N+
Sbjct: 65 EGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLHGNFIGDKGASYISEMVNL 124
Query: 163 KWCNC----ITDSDMKPLSGLTNLKSLQISCSKVTDSG---IAYLKGLQKLTLLNLEGCP 215
N +T + +SGL NLKSL I +++ G I+ +K L+ LT L++ G
Sbjct: 125 THLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLDVSGNS 184
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ + LS + +L +L++ + G E + L LN+ N++ + G+
Sbjct: 185 ILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSNDLGSSGAKLISGM 244
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+NL SLN+ + + EG + + N+ + + I D + + + LKSLN +
Sbjct: 245 SNLTSLNISANRLLGEGAKFIGEMHNVTILVIRNNDIGDEGAKFICKMKQLKSLNAVYNR 304
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I+ G +++ + LT LD+ I GA +R KNL SL + + D G+K I L
Sbjct: 305 ISSKGFESISEMKQLTSLDIGYNSIDSKGAKSVRKLKNLTSLNVRSNMIDDEGLKAIGQL 364
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 96/179 (53%), Gaps = 2/179 (1%)
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ NL+S+++ G+ D L++++ + L L++ + G ++ + GLT L++
Sbjct: 1 MQNLKSLSIVGNGLVDEHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNINDN 60
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I D GA ++ K L L++ + + G + I +L +LT LNL N + DK IS
Sbjct: 61 YILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLHGNF-IGDKGASYIS 119
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVSF 476
+ L LNV ++++T+ G RH+ LKNL+SL + + ++ K + + +DL L S
Sbjct: 120 EMVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSL 178
>gi|329905907|ref|ZP_08274287.1| hypothetical protein IMCC9480_2692 [Oxalobacteraceae bacterium
IMCC9480]
gi|327547418|gb|EGF32242.1| hypothetical protein IMCC9480_2692 [Oxalobacteraceae bacterium
IMCC9480]
Length = 552
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 137/420 (32%), Positives = 213/420 (50%), Gaps = 31/420 (7%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S +TD+GL L + L+ LD C I D GL HL +++LT L+ R+ IT G++
Sbjct: 47 SKLTDAGLASLAPLTALKQLDLGHCTGIGDTGLAHLGNMASLTQLNVRQCTNITDAGLEQ 106
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A L L +L+L C RI G+ +LK L L L++ C+ I+++ + L L L
Sbjct: 107 LANLPRLARLNLAGCHRITAAGIAHLKKL-PLTYLDLSGCSGISNAAIAHLKA-HQLTEL 164
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDD 243
+S C+ D G A+L + L L+L GC T + L L+ +L L+L C D
Sbjct: 165 NLSDCTGFGDEGFAHLAEV-PLQTLDLSGCTGFTNSGLRFLNK-STLTRLSLRNCTQLDF 222
Query: 244 GCE-KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLT 300
G + SL+ L+L G + + L L+ L LE L+L + + D GL +L +T
Sbjct: 223 GATFRLYGAQSLRHLDLAGCEGLDNTALTALQDLP-LEHLDLARNTFLNDTGLESLAEMT 281
Query: 301 NLESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG- 357
+L +NLS ++D +L LA L +L+ L L + R+ TD GLA L+ L L L+L
Sbjct: 282 SLRYLNLSGGADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQLSHLP-LETLELVDC 340
Query: 358 ARITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+T++ A L L+ L++ G L+DAG+ H+ D+++L L+LS N N TD
Sbjct: 341 VALTNTALARLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKLDLSWNRNFTD---- 396
Query: 416 LISGLTGLVSLNVSNSR------ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQSR 468
+G L L + R +T G+ L + L+SL L C + + + +L SR
Sbjct: 397 --AGAVALRELPLGQLRLNGWIGLTDQGMTALSGMP-LQSLGLIGCDNIDGSGLAQLNSR 453
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 182/388 (46%), Gaps = 20/388 (5%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK 78
++ ++ + L +L L G D+ +A L ++DLSG + T+SGL L
Sbjct: 148 ISNAAIAHLKAHQLTELNLSDCTGFGDEGFAHLAE--VPLQTLDLSGCTGFTNSGLRFLN 205
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
S L L C Q+ G L G +L L + + A L L LDL
Sbjct: 206 K-STLTRLSLRNCTQLDFGATFRLYGAQSLRHLDLAGCEGLDNTALTALQDL-PLEHLDL 263
Query: 139 ERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
R T ++ GL +L + L LN+ +TD+ + L+ L L+ L ++ C + TD+G
Sbjct: 264 ARNTFLNDTGLESLAEMTSLRYLNLSGGADMTDAALAHLAELPALQHLILNNCRRTTDAG 323
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSL 254
+A L L TL ++ +T L L A +L L+L+ C LSD G + I +L
Sbjct: 324 LAQLSHLPLETLELVDCVALTNTALARLPGAAATLQKLDLSGCTALSDAGLAHLADITTL 383
Query: 255 KVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGI 312
+ L+L +N TD V L+ L L L L+ G+ D+G+ L+G+ L+S+ L
Sbjct: 384 RKLDLSWNRNFTDAGAVALRELP-LGQLRLNGWIGLTDQGMTALSGMP-LQSLGLIGCDN 441
Query: 313 SDGSLRKLAGLSS--LKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 368
DGS LA L+S L+ +L R + D + L L L LDL + ITD+G A+L
Sbjct: 442 IDGS--GLAQLNSRCLQKFDLSHCRLLNDDAMIYLRRLP-LKELDLSWCGAITDAGLAHL 498
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLS 396
+ R G+TD G+K++ +
Sbjct: 499 TGLQLTRLDLTYNSGVTDEGLKNLSGMP 526
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 42/223 (18%)
Query: 20 LTEVSLEAFR--DC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLI 75
L+ + LE DC AL + L + PG ++L +DLSG + ++D+GL
Sbjct: 327 LSHLPLETLELVDCVALTNTALARLPGA-----------AATLQKLDLSGCTALSDAGLA 375
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL----- 130
HL D + L+ LD ++ +D G LR L L L +T QGM A +G+
Sbjct: 376 HLADITTLRKLDLSWNRNFTDAGAVALRELP-LGQLRLNGWIGLTDQGMTALSGMPLQSL 434
Query: 131 ---------------IN---LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+N L K DL C ++ + + L+ L++ WC ITD+
Sbjct: 435 GLIGCDNIDGSGLAQLNSRCLQKFDLSHCRLLNDDAMIYLRRLPLKELDLSWCGAITDAG 494
Query: 173 MKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGC 214
+ L+GL L L ++ S VTD G+ L G+ L L + GC
Sbjct: 495 LAHLTGL-QLTRLDLTYNSGVTDEGLKNLSGM-PLQQLRVLGC 535
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 146/320 (45%), Gaps = 37/320 (11%)
Query: 56 GSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
SL +DL+G + D + L L+D L+ LD ++D GLE L +++L L+
Sbjct: 231 AQSLRHLDLAGCEGLDNTALTALQDLP-LEHLDLARNTFLNDTGLESLAEMTSLRYLNLS 289
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTR-IHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+T + A L L L L C R GL L L LE+L + C +T++ +
Sbjct: 290 GGADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQLSHL-PLETLELVDCVALTNTAL 348
Query: 174 KPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSL 230
L G L+ L +S C+ ++D+G+A+L + L L+L T A +L L L
Sbjct: 349 ARLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKLDLSWNRNFTDAGAVALREL-PL 407
Query: 231 FYLNLN-RCQLSDDGCEKFSK--------IGSLKVLNLGFNEITDECL------------ 269
L LN L+D G S IG + G ++ CL
Sbjct: 408 GQLRLNGWIGLTDQGMTALSGMPLQSLGLIGCDNIDGSGLAQLNSRCLQKFDLSHCRLLN 467
Query: 270 ----VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGL 323
++L+ L L+ L+L CG I D GL +LTGL L ++L++ +G++D L+ L+G+
Sbjct: 468 DDAMIYLRRLP-LKELDLSWCGAITDAGLAHLTGL-QLTRLDLTYNSGVTDEGLKNLSGM 525
Query: 324 SSLKSLNLDARQITDTGLAA 343
+ L Q+T G A
Sbjct: 526 PLQQLRVLGCHQVTPNGFWA 545
>gi|290974552|ref|XP_002670009.1| predicted protein [Naegleria gruberi]
gi|284083563|gb|EFC37265.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 145/305 (47%), Gaps = 25/305 (8%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D K L L L L I + + + G Y+ +Q L +LN+ G + + +S + L
Sbjct: 55 DCKKLGLLKQLTQLDIDGNNIDEEGAKYISEMQYLAILNMLGNNIGNEGVKYISGMKQLT 114
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+LN++ + DG + ++ L LN+G N I DE + +T L L + CGI E
Sbjct: 115 HLNVSENNIGLDGVKYIVEMKQLTHLNIGQNSIGDEGAKLIGEMTQLLDLCIFYCGISSE 174
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL---------------------- 329
G+ +++ L L +N+S + D S + ++G++ L L
Sbjct: 175 GIKHISKLDKLTDLNISSNMLYDDSTKYISGMNQLTYLRIHDNNIGDEGAKFLGKMKQLT 234
Query: 330 --NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
N+ ++T G+ LT L LT +D+ I D+GA Y+ K L +L++ + +
Sbjct: 235 GINIWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSDNNIGEE 294
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
G K+I ++ LT+L L +N N+ + + IS L L L++S + I G +++ + L
Sbjct: 295 GAKYIGNMKQLTILTLWKN-NIRGEGAKYISKLEKLTELDISENHIDEKGAKYISEMSQL 353
Query: 448 RSLTL 452
+L +
Sbjct: 354 NALDI 358
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 151/342 (44%), Gaps = 27/342 (7%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L +D+ G+++ + G ++ + L L+ I + G++++ G+ LT L+ NN
Sbjct: 64 QLTQLDIDGNNIDEEGAKYISEMQYLAILNM-LGNNIGNEGVKYISGMKQLTHLNVSENN 122
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G+K + L L++ + N I D K +
Sbjct: 123 -IGLDGVKYIVEMKQLTHLNIGQ-------------------------NSIGDEGAKLIG 156
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+T L L I ++ GI ++ L KLT LN+ + +S + L YL ++
Sbjct: 157 EMTQLLDLCIFYCGISSEGIKHISKLDKLTDLNISSNMLYDDSTKYISGMNQLTYLRIHD 216
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ D+G + K+ L +N+ NE+T E + L GL L +++ S IGD G ++
Sbjct: 217 NNIGDEGAKFLGKMKQLTGINIWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYIS 276
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
+ L ++++S I + + + + L L L I G ++ L LT LD+
Sbjct: 277 EMKQLTNLDVSDNNIGEEGAKYIGNMKQLTILTLWKNNIRGEGAKYISKLEKLTELDISE 336
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
I + GA Y+ L +L+I + + G K+IK++ LT
Sbjct: 337 NHIDEKGAKYISEMSQLNALDISVNIIGNQGAKYIKEMKQLT 378
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 81/177 (45%), Gaps = 35/177 (19%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
+ Q G+N W + + ++G L+ +D+S +++ D+G ++ + L +LD +
Sbjct: 230 MKQLTGIN-IWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSD 288
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
I + G +++ + LT L+ +NN I +G K + L L +LD+
Sbjct: 289 N-NIGEEGAKYIGNMKQLTILTLWKNN-IRGEGAKYISKLEKLTELDISE---------- 336
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
N I + K +S ++ L +L IS + + + G Y+K +++LT
Sbjct: 337 ---------------NHIDEKGAKYISEMSQLNALDISVNIIGNQGAKYIKEMKQLT 378
>gi|290999929|ref|XP_002682532.1| predicted protein [Naegleria gruberi]
gi|284096159|gb|EFC49788.1| predicted protein [Naegleria gruberi]
Length = 339
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 143/296 (48%), Gaps = 2/296 (0%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+L GL +L+SL+I + + I ++ +S L L +L I + G YL L++LT L
Sbjct: 46 HLSGLKQLKSLHI-YGSQIRGEGVRYISELKQLTNLDIRSHNIFHIGAKYLSELKQLTTL 104
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
N+ G + A +S L L L + + +G + S++ L L + N + +E L
Sbjct: 105 NIYGNHIGAKGSKYISELNQLTTLFIAENSIGVEGAKYLSELKQLTNLGISVNWLGNEGL 164
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
++ + L L++ IG EG +L L L +N+S I D L + L L +L
Sbjct: 165 AYVSKIKQLTILDISHNDIGAEGGKHLGELKQLTLLNISHNKIQDEGLENIGKLKQLTTL 224
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
++ I G L+ L LT L++ RI D G+ Y+ K L L I + + G
Sbjct: 225 IINQNDIGAEGAQYLSELKQLTFLNISDNRIGDEGSKYIGELKQLVDLYINDNDIGEEGA 284
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
K+++DL L LN+ N D+ + IS L L L+++N+ I G +HL +K
Sbjct: 285 KYLRDLKQLIYLNVGGN-EFGDEGAKYISELKQLTKLDINNNSIGDEGTKHLSEMK 339
>gi|46446627|ref|YP_007992.1| hypothetical protein pc0993 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400268|emb|CAF23717.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 478
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 121/228 (53%), Gaps = 7/228 (3%)
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 293
N+ L+D + +LK+L +TD+ L HL LT L+ L L C + D GL
Sbjct: 234 NQTYLTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGL 293
Query: 294 VNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT 351
+LT L L+ ++LSF I+D L L L++L+ L L +T GLA LT L L
Sbjct: 294 AHLTSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQ 353
Query: 352 HLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
+LDL + +TD G A+LR L+ L++ LTDAG+ H+ L +LT L L L
Sbjct: 354 YLDLSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKLIWCHKL 413
Query: 410 TDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 456
TD L + L L LN+S+ R +T AGL HL PL L+ L L C+
Sbjct: 414 TDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCR 461
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 125/237 (52%), Gaps = 11/237 (4%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL 77
LT+ A ++C L+ L + D + +AS ++L + L G D VTD+GL HL
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASL-TALQHLGLRGCDKVTDAGLAHL 296
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
LQ LD +FC I+D GL HL L+ L L ++ +T G+ L L LD
Sbjct: 297 TSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLD 356
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITD---SDMKPLSGLTNLKSLQISCSKVT 193
L + GL +L+ L+ L+ L++ C +TD + + PL LT+LK I C K+T
Sbjct: 357 LSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLK--LIWCHKLT 414
Query: 194 DSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKF 248
D+G+A+L+ L L LNL C +T A L L L +L YLNL+ C +L+D G F
Sbjct: 415 DAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRKLTDTGLASF 471
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 133/260 (51%), Gaps = 30/260 (11%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
+ +TD+ + LK + L +L E C +T L L++L +L +L L C +++D G
Sbjct: 236 TYLTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGLAH 295
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESI 305
+ + +L+ L+L F ITD L HL LT L+ L L C + GL +LT L L+ +
Sbjct: 296 LTSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYL 355
Query: 306 NLSFT-GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+LS+ ++D L L L +L+ L+L + ++TD GLA LT L LTHL L
Sbjct: 356 DLSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKL-------- 407
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
I LTDAG+ H++ L +L LNLS NLTD L + LT L
Sbjct: 408 ---------------IWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTAL 452
Query: 424 VSLNVSNSR-ITSAGLRHLK 442
LN+S+ R +T GL K
Sbjct: 453 QYLNLSDCRKLTDTGLASFK 472
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 133/267 (49%), Gaps = 29/267 (10%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI- 144
L F+ ++D L+ NL L+F A+T G+ A L L L L C ++
Sbjct: 230 LHFSNQTYLTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVT 289
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGL 203
GL +L L L+ L++ +C ITD+ + L+ LT L+ L + C +T +G+A+L L
Sbjct: 290 DAGLAHLTSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPL 349
Query: 204 QKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 261
+ L L+L +T L L L +L +L+L C +L+D G + + +L L L +
Sbjct: 350 KALQYLDLSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKLIW 409
Query: 262 -NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
+++TD L HL+ L L+ LNL SC + D GL +L LT L+ +NLS
Sbjct: 410 CHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLS----------- 458
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTS 346
D R++TDTGLA+ +
Sbjct: 459 ------------DCRKLTDTGLASFKA 473
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++T +GL HL LQ LD ++ ++D GL HLR L L L +T G+
Sbjct: 337 NLTGAGLAHLTPLKALQYLDLSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHL 396
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L L L C ++ GL +L+ L+ L+ LN+ C +TD+ + L LT L+ L
Sbjct: 397 TPLVALTHLKLIWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLN 456
Query: 187 IS-CSKVTDSGIAYLKG 202
+S C K+TD+G+A K
Sbjct: 457 LSDCRKLTDTGLASFKA 473
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL+ L+ L+ + C ++D GL HL L+ L L+ +T G+ +F
Sbjct: 413 LTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRKLTDTGLASFK 472
Query: 129 GLI 131
I
Sbjct: 473 ASI 475
>gi|290993170|ref|XP_002679206.1| leucine rich repeat protein [Naegleria gruberi]
gi|284092822|gb|EFC46462.1| leucine rich repeat protein [Naegleria gruberi]
Length = 527
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 111/425 (26%), Positives = 193/425 (45%), Gaps = 44/425 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + + S + D G+ ++ + L L + ISD G+++LR L LT+L
Sbjct: 118 SELKQLTRLTIDASHIRDEGVRYISELKQLAYLSVH-SNDISDDGVKYLRELKQLTTLII 176
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N + ++G K + L L L C I +N +G + + C CI++
Sbjct: 177 F-SNRVGSEGCKCISELKQLTSL----C--IDDNHINDEGANN--RVGSEGCKCISE--- 224
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L L SL I + + D G YL S L L YL
Sbjct: 225 -----LKQLTSLCIDDNHINDEGAKYL------------------------SELAQLTYL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+++ L ++G + S + L+ LN+ N I DE L + L+ L SL L + IG EG
Sbjct: 256 DISSNGLGNEGTKYISTLNQLEKLNISQNYIGDEGLEYFGKLSQLTSLELSNNKIGTEGA 315
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
L+ L L +++ + I D L L +L ++ +I + G+ + L L +L
Sbjct: 316 KYLSELKQLTQLDIEYNKIGDKGAMYFGELKQLVNLIINNNRIGNDGVKYIGELKQLIYL 375
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
D+ RI + G Y+ K L + I + + G K+I LS LT L LS N N+ ++
Sbjct: 376 DISENRIGNEGIKYIGELKQLTDVNISENRIGNEGAKYIGQLSQLTSLYLSNN-NIGNEG 434
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPN 472
+ IS L L+ L ++N++I + G +++ +K + L + + + IK + + + L +
Sbjct: 435 AKYISELKELIYLYMNNNKIRNEGAKYISEMKQVTQLDIGNNYIGEEGIKYISEMKQLIH 494
Query: 473 LVSFR 477
L ++
Sbjct: 495 LEKYQ 499
>gi|46445682|ref|YP_007047.1| hypothetical protein pc0048 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399323|emb|CAF22772.1| hypothetical protein pc0048 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 531
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 132/241 (54%), Gaps = 21/241 (8%)
Query: 255 KVLNLGFNEI-----------TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNL 302
K+LN NEI TD L+ LK NL++L+L +C + D+GL +LT LTNL
Sbjct: 289 KILNYFSNEIEKLNFSENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNL 348
Query: 303 ESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-AR 359
+ +NLS +++ L L +L+ LNL ITD GLA L L L +L+L G A
Sbjct: 349 QYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAF 408
Query: 360 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
ITD+G A+L+ L+ L + G +TDAG+ H+ L +L L+LS +LT+ LE ++
Sbjct: 409 ITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLA 468
Query: 419 GLTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLTLESCKVTAN-DIKRLQSRDL---PNL 473
L L LN+S +T AGL HL L NL+ L L C+ A+ K R L PNL
Sbjct: 469 SLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFKLTHFRTLLANPNL 528
Query: 474 V 474
+
Sbjct: 529 I 529
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 28/225 (12%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL++L C ++D GL L L+NL L+ + +T +G+
Sbjct: 306 NAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLA 365
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
F LI L L+L C I GL +LK L+ L+ LN LSG
Sbjct: 366 HFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLN--------------LSG------ 405
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSD 242
C+ +TD+G+A+LK L L LNL GC +T A L L+ L +L +L+L+ C L++
Sbjct: 406 ----CAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTN 461
Query: 243 DGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC 286
G E+ + + +L+ LNL G +T+ L HL LTNL+ LNL+ C
Sbjct: 462 AGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHC 506
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 114/207 (55%), Gaps = 7/207 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK+L + +C +TD G+A L L L LNL C
Sbjct: 297 EIEKLNFSENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCC 356
Query: 215 -PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T L +L +L YLNL+ C ++D G + +L+ LNL G ITD L H
Sbjct: 357 DKLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAH 416
Query: 272 LKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
LK L L+ LNL C I D GL +LT L L+ ++LS+ +++ L +LA L +L+ L
Sbjct: 417 LKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHL 476
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDL 355
NL +T+ GL LTSLT L L+L
Sbjct: 477 NLSGCIYLTEAGLTHLTSLTNLQQLNL 503
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 3/190 (1%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD GL L +NLQ L+ + C ++++ GL H + L L L+ IT G+
Sbjct: 333 NLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHL 392
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L L+L C I GL +LK L+ L+ LN+ C ITD+ + L+ L LK L
Sbjct: 393 KPLVALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLD 452
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+S C+ +T++G+ L L L LNL GC +T A L L++L +L LNLN C+ D
Sbjct: 453 LSWCNSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHCEHFADV 512
Query: 245 CEKFSKIGSL 254
K + +L
Sbjct: 513 RFKLTHFRTL 522
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++LSG + +TD+GL HLK LQ L+ + C I+D GL HL L L L
Sbjct: 397 ALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWC 456
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N++T G++ A L+ L L+L C + GL +L L L+ LN+ C D K
Sbjct: 457 NSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFK- 515
Query: 176 LSGLTNLKSL 185
LT+ ++L
Sbjct: 516 ---LTHFRTL 522
>gi|301126468|ref|XP_002909849.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262101999|gb|EEY60051.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 427
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 169/319 (52%), Gaps = 14/319 (4%)
Query: 55 QGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSN-LTSL 111
Q L V+L+G S +TD + L + S L S+ C Q++D ++ L SN LTS+
Sbjct: 84 QFPHLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSV 143
Query: 112 SFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN--C 167
+ ++ +G+ A A L L L+L C+++ G+ L L L++LN+ +CN
Sbjct: 144 NLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGA 203
Query: 168 ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
+TD + L+ +T+L SL +S CS++TD GI+ L L KL L + VT +L+
Sbjct: 204 LTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALA 263
Query: 226 ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
L +L L++ C ++D G E L NL + +EI D H++ LT + LN
Sbjct: 264 PLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNF 323
Query: 284 DSCG-IGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 340
CG + D GL ++ L NL S+++ S ++D L +L+ L+ LKSL L I D G
Sbjct: 324 MKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEG 383
Query: 341 LAALTSLTGLTHLDLFGAR 359
+AAL+ L+ L LDL R
Sbjct: 384 IAALSHLSSLVILDLSNCR 402
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 180/364 (49%), Gaps = 41/364 (11%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
+L+ ++ C ++D +E L LS LTS++ + +T + +K
Sbjct: 87 HLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIK---------------- 130
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQI-SCSKVTDSGIAY 199
L+ L S+N+ +C ++D + + S L+ L L + CS+V D+GI
Sbjct: 131 ------LLTESQSNSLTSVNLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRA 184
Query: 200 LKGLQKLTLLNLEGC---PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS---KIG 252
L L+ L LNL C +T + +L+ + SL LNL+ C QL+D+G S K+
Sbjct: 185 LARLKNLQTLNLWYCNQGALTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLR 244
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-T 310
L++ N+G E+TD+ + L L NL +L++ C I D G L L S NL + +
Sbjct: 245 HLEIANVG--EVTDQGFLALAPLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCS 302
Query: 311 GISDGSLRKLAGLSSLKSLN-LDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYL 368
I D + + + L+ ++ LN + ++TD GL ++ L LT LD+ +TD G L
Sbjct: 303 EIGDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNEL 362
Query: 369 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI---SGLTGLV 424
L+SL + G G+ D G+ + LSSL +L+LS + +K L I +G++G V
Sbjct: 363 SKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILDLSNCRQVGNKALLGIDDGTGVSGAV 422
Query: 425 SLNV 428
+ V
Sbjct: 423 AHQV 426
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 166/321 (51%), Gaps = 19/321 (5%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQK--LTLLNLEG 213
L+ +N+ C+ +TD ++ L+ L+ L S+ + C +VTD I L Q LT +NL
Sbjct: 88 LKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGY 147
Query: 214 CPVTAACLDSLSALGS----LFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF---NEIT 265
C V + + ++A+ S L YLNL C Q+ D+G +++ +L+ LNL + +T
Sbjct: 148 CKVVSD--EGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALT 205
Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTG-ISDGSLRKLAGL 323
D + L +T+L SLNL +C + DEG+ +L+ L L + ++ G ++D LA L
Sbjct: 206 DGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPL 265
Query: 324 SSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG 381
+L +L++ ITD G L + L +L + + I D+ ++ + +R L
Sbjct: 266 VNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMK 325
Query: 382 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLR 439
G +TD G++ I L +LT L++ N+TD+ L +S L L SL + S I G+
Sbjct: 326 CGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEGIA 385
Query: 440 HLKPLKNLRSLTLESCKVTAN 460
L L +L L L +C+ N
Sbjct: 386 ALSHLSSLVILDLSNCRQVGN 406
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 102/319 (31%), Positives = 162/319 (50%), Gaps = 23/319 (7%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIA-SQGSSLLSVDLSGSDV-TDSGLIH 76
LT+ S+E + + L + L V DK + ++ SQ +SL SV+L V +D G+
Sbjct: 99 LTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGYCKVVSDEGITA 158
Query: 77 L-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINL 133
+ + S L L+ C Q+ D G+ L L NL +L+ N A+T G+ A A + +L
Sbjct: 159 IASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALTDGGISALAEVTSL 218
Query: 134 VKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 191
L+L C+++ G+ +L L+KL L I +TD L+ L NL +L ++ C
Sbjct: 219 TSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPLVNLVTLDVAGCYN 278
Query: 192 VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 249
+TD+G L KL NL C + A + +L + +LN +C +++D G +
Sbjct: 279 ITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIA 338
Query: 250 KIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESIN 306
K+ +L L++ FN +TDE L L L L+SL L C GI DEG+ L+ L++L ++
Sbjct: 339 KLRNLTSLDMVSCFN-VTDEGLNELSKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILD 397
Query: 307 LS---------FTGISDGS 316
LS GI DG+
Sbjct: 398 LSNCRQVGNKALLGIDDGT 416
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 113/204 (55%), Gaps = 12/204 (5%)
Query: 264 ITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLS-FTGISDGSLRKL 320
I DE L+ L +L+ +NL C + DE + L L+ L S+ L ++D S++ L
Sbjct: 73 IFDENLMSLPMQFPHLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLL 132
Query: 321 --AGLSSLKSLNLD-ARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLR 375
+ +SL S+NL + ++D G+ A+ S L+ L +L+L G +++ D+G L KNL+
Sbjct: 133 TESQSNSLTSVNLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQ 192
Query: 376 SLEI--CG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-S 431
+L + C G LTD G+ + +++SLT LNLS LTD+ + +S L L L ++N
Sbjct: 193 TLNLWYCNQGALTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVG 252
Query: 432 RITSAGLRHLKPLKNLRSLTLESC 455
+T G L PL NL +L + C
Sbjct: 253 EVTDQGFLALAPLVNLVTLDVAGC 276
>gi|406833162|ref|ZP_11092756.1| hypothetical protein SpalD1_16026 [Schlesneria paludicola DSM
18645]
Length = 447
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 168/335 (50%), Gaps = 12/335 (3%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKL 206
LV L L+ L I C + D + LSGL L SL ++ S + DSG+ +K +L
Sbjct: 100 LVLFGKLSDLKKLQIFNCRTLNDEMVAQLSGLKGLTSLALTNSVINDSGVETIVKSFPEL 159
Query: 207 TLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EI 264
T L+L +T + +S LG L L L + Q++D G ++ SK+ L+ L+L N E
Sbjct: 160 TELDLSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQRLSKLQELRSLDLRGNMEA 219
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS 324
D L + GL +L+S S + D GL L+ LES+ L I+D S LA LS
Sbjct: 220 GDMTLEVVAGLPHLQSFKHRSTAVNDSGLEYLSQGQALESLLLQDFVITDQSGPHLAKLS 279
Query: 325 SLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSL---EI 379
L L + Q G+ AL + GL L L + D + LR L E+
Sbjct: 280 KLSQLEIFRCQGFGSDGVLALKGM-GLIRLTLRDLPNVDDRAMEVFDDLPQLRRLYLHEL 338
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G DAG+KH+ L SL LL++ +TD+T+++IS L L L++ + +T + +
Sbjct: 339 TSVG--DAGLKHLAGLKSLELLDIWTVPQMTDETVDVISQLPNLKDLSIRVTGVTDSAID 396
Query: 440 HLKPLKNLRSLTL-ESCKVTANDIKRLQSRDLPNL 473
L +K+L+SLT E+ +TA +K+L +R L
Sbjct: 397 KLLTMKSLQSLTFKENGSITAEGLKKLSARKWSKL 431
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 143/335 (42%), Gaps = 55/335 (16%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
GS++ L+ S+L+ L C ++D + L GL LTSL+ N+ I G++
Sbjct: 92 GSNLQSEDLVLFGKLSDLKKLQIFNCRTLNDEMVAQLSGLKGLTSLALT-NSVINDSGVE 150
Query: 126 AFA-GLINLVKLDLERCTRIHGGLVN-------------------------LKGLMKLES 159
L +LDL T + G+V L L +L S
Sbjct: 151 TIVKSFPELTELDLSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQRLSKLQELRS 210
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L+++ D ++ ++GL +L+S + + V DSG+ YL Q L L L+ +T
Sbjct: 211 LDLRGNMEAGDMTLEVVAGLPHLQSFKHRSTAVNDSGLEYLSQGQALESLLLQDFVITDQ 270
Query: 220 CLDSLSALGSLFYLNLNRCQ-------------------------LSDDGCEKFSKIGSL 254
L+ L L L + RCQ + D E F + L
Sbjct: 271 SGPHLAKLSKLSQLEIFRCQGFGSDGVLALKGMGLIRLTLRDLPNVDDRAMEVFDDLPQL 330
Query: 255 KVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGI 312
+ L L + D L HL GL +LE L++ + + DE + ++ L NL+ +++ TG+
Sbjct: 331 RRLYLHELTSVGDAGLKHLAGLKSLELLDIWTVPQMTDETVDVISQLPNLKDLSIRVTGV 390
Query: 313 SDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTS 346
+D ++ KL + SL+SL IT GL L++
Sbjct: 391 TDSAIDKLLTMKSLQSLTFKENGSITAEGLKKLSA 425
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 89/188 (47%), Gaps = 8/188 (4%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
VND ++ + SQG +L S+ L +TD HL S L L+ C G+ L
Sbjct: 242 AVNDSGLEYL-SQGQALESLLLQDFVITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLAL 300
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLN 161
+G+ L L+ R + + M+ F L L +L L T + GL +L GL LE L+
Sbjct: 301 KGM-GLIRLTLRDLPNVDDRAMEVFDDLPQLRRLYLHELTSVGDAGLKHLAGLKSLELLD 359
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL---KGLQKLTLLNLEGCPVTA 218
I +TD + +S L NLK L I + VTDS I L K LQ LT E +TA
Sbjct: 360 IWTVPQMTDETVDVISQLPNLKDLSIRVTGVTDSAIDKLLTMKSLQSLTF--KENGSITA 417
Query: 219 ACLDSLSA 226
L LSA
Sbjct: 418 EGLKKLSA 425
>gi|290979162|ref|XP_002672303.1| predicted protein [Naegleria gruberi]
gi|284085879|gb|EFC39559.1| predicted protein [Naegleria gruberi]
Length = 371
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 150/315 (47%), Gaps = 5/315 (1%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+K L KL S N N I + K +S L L L IS +K+ G Y+ L++LT L+
Sbjct: 1 MKSLTKLISCN----NNIGVEEAKYISELKQLTHLYISSNKIGVEGAKYISELKQLTNLD 56
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ + A ++ + L L +L + + D+G + S + L L FN I E +
Sbjct: 57 ISYNNIGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVK 116
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
++ L L LN+ S +GDEG L+ L L ++N+S + I + + ++ L LN
Sbjct: 117 YIIKLKQLSYLNICSNKVGDEGAKYLSELKQLTNLNISNSNICAKGVEHITEMNQLTILN 176
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ I G + L LT L+++ + I GA Y+ K L L I + G K
Sbjct: 177 ISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMKQLTDLNISYNNIGIEGAK 236
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+I L LT L + N + D+ + IS L L +LN+ ++ I G +++ LK L +L
Sbjct: 237 YIGKLKQLTCLTIYNNY-ICDEGAKYISELNQLTNLNIYSNNIGDEGAKYISELKQLTNL 295
Query: 451 TLESCKVTANDIKRL 465
+ ++ A +K +
Sbjct: 296 DISVNQIGAKGVKYI 310
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 163/355 (45%), Gaps = 27/355 (7%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G +++ L LT+L NN I A+G++ L L L + G +L L +L
Sbjct: 42 GAKYISELKQLTNLDISYNN-IGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKHLSALKQL 100
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L + N I +K + L L L I +KV D G YL L++LT LN+ +
Sbjct: 101 TYLYTAFNN-IGVEGVKYIIKLKQLSYLNICSNKVGDEGAKYLSELKQLTNLNISNSNIC 159
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
A G E +++ L +LN+ N I E ++ L
Sbjct: 160 A------------------------KGVEHITEMNQLTILNISTNNIGIEGAKYIGKLKQ 195
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L LN+ I EG ++ + L +N+S+ I + + L L L + I
Sbjct: 196 LTCLNIYYSNIDIEGAKYISEMKQLTDLNISYNNIGIEGAKYIGKLKQLTCLTIYNNYIC 255
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D G ++ L LT+L+++ I D GA Y+ K L +L+I + GVK+I +L+
Sbjct: 256 DEGAKYISELNQLTNLNIYSNNIGDEGAKYISELKQLTNLDISVNQIGAKGVKYIAELNQ 315
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
LT+L+ S N N+ D+ + IS L L +L++S++ I+ G++ + +K+L L +
Sbjct: 316 LTILSASLN-NIRDEGAKYISELKQLTNLDISSNNISIEGVKCFEEMKHLTVLEI 369
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 166/355 (46%), Gaps = 9/355 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + +S + + G ++ + L +LD ++ I G+EH+ L LT L
Sbjct: 23 SELKQLTHLYISSNKIGVEGAKYISELKQLTNLDISYN-NIGAEGVEHIGNLKQLTFLCI 81
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLN-IKWC-NCITD 170
NN I +G K + L L L T + G+ +K ++KL+ L+ + C N + D
Sbjct: 82 YHNN-IGDEGAKHLSALKQLTYL----YTAFNNIGVEGVKYIIKLKQLSYLNICSNKVGD 136
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K LS L L +L IS S + G+ ++ + +LT+LN+ + + L L
Sbjct: 137 EGAKYLSELKQLTNLNISNSNICAKGVEHITEMNQLTILNISTNNIGIEGAKYIGKLKQL 196
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LN+ + +G + S++ L LN+ +N I E ++ L L L + + I D
Sbjct: 197 TCLNIYYSNIDIEGAKYISEMKQLTDLNISYNNIGIEGAKYIGKLKQLTCLTIYNNYICD 256
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
EG ++ L L ++N+ I D + ++ L L +L++ QI G+ + L L
Sbjct: 257 EGAKYISELNQLTNLNIYSNNIGDEGAKYISELKQLTNLDISVNQIGAKGVKYIAELNQL 316
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
T L I D GA Y+ K L +L+I ++ GVK +++ LT+L + Q
Sbjct: 317 TILSASLNNIRDEGAKYISELKQLTNLDISSNNISIEGVKCFEEMKHLTVLEIYQ 371
>gi|290999671|ref|XP_002682403.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284096030|gb|EFC49659.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 403
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 148/301 (49%), Gaps = 1/301 (0%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+ L+ ++SL C + +K +S L L L I S + D G+ Y+ L++LT L++
Sbjct: 104 RKLILMKSLTKLIIRCDDEEGVKYISELKQLTKLTIYGSHIGDEGVRYISELKQLTYLSI 163
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
++ L L L L + ++ ++G + S++ L L++ N+I E +
Sbjct: 164 PSNGISEYGAKHLRELKQLTTLIIFCNRVGNEGSKYISELKQLTTLSIDENDIGAEGAKY 223
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L LT L L++ S +GDEG ++ + L +++++ I + + ++ L+ LK+L++
Sbjct: 224 LSELTQLTCLDISSNWLGDEGAKYVSKMKQLTTLHINSNRIGNEGSKFISSLNQLKNLDI 283
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
I D GL L L LDL RI D GA YL K L L+I L D G
Sbjct: 284 CKNDIGDEGLEYFGQLAQLKSLDLSYNRIGDEGAQYLSELKQLIYLDIKTNHLGDKGAMP 343
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
I +L L L ++ N + ++ + IS L L L++ N+ IT G ++ +K L LT
Sbjct: 344 IGELKKLIYLYINNN-KIRNEGAKYISELKQLTKLDIRNNFITEEGTKYFTEMKQLIDLT 402
Query: 452 L 452
+
Sbjct: 403 I 403
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 144/294 (48%), Gaps = 4/294 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ +LT L R ++ +G+K + L L KL + G+ + L +L L+I
Sbjct: 109 MKSLTKLIIRCDDE---EGVKYISELKQLTKLTIYGSHIGDEGVRYISELKQLTYLSIP- 164
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I++ K L L L +L I C++V + G Y+ L++LT L+++ + A L
Sbjct: 165 SNGISEYGAKHLRELKQLTTLIIFCNRVGNEGSKYISELKQLTTLSIDENDIGAEGAKYL 224
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S L L L+++ L D+G + SK+ L L++ N I +E + L L++L++
Sbjct: 225 SELTQLTCLDISSNWLGDEGAKYVSKMKQLTTLHINSNRIGNEGSKFISSLNQLKNLDIC 284
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
IGDEGL L L+S++LS+ I D + L+ L L L++ + D G +
Sbjct: 285 KNDIGDEGLEYFGQLAQLKSLDLSYNRIGDEGAQYLSELKQLIYLDIKTNHLGDKGAMPI 344
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L +L + +I + GA Y+ K L L+I +T+ G K+ ++ L
Sbjct: 345 GELKKLIYLYINNNKIRNEGAKYISELKQLTKLDIRNNFITEEGTKYFTEMKQL 398
>gi|59802548|gb|AAX07514.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 250
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 103/191 (53%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
VT A L L+ L +L LNL +++D G ++ S + L L L ++TD L L L
Sbjct: 31 VTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAPL 90
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
TNL +L L S + D GL L LTNL + L T ++D L++LA L SL L L Q
Sbjct: 91 TNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQ 150
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
IT+ G+ L T LT LDL R+TD+G L F L L + G +TD +K + L
Sbjct: 151 ITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAPL 210
Query: 396 SSLTLLNLSQN 406
+L L+LS+N
Sbjct: 211 KNLAFLSLSRN 221
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 115/209 (55%), Gaps = 3/209 (1%)
Query: 246 EKFSKIGSLKVLNLGFN--EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
E+ K V+++ F ++TD L L L NL LNL + D GL L+ LT L
Sbjct: 11 ERDEKAPGKPVISVDFALWKVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLT 70
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ L T ++D L++LA L++L +L L + Q+TD GL L LT LT L L ++TD+
Sbjct: 71 HLCLMQTKVTDAGLKELAPLTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDA 130
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G L K+L LE+ +T+AG+K + + LT L+LS +TD ++ ++ T L
Sbjct: 131 GLKELAPLKSLTLLELGETQITEAGIKELAPFTKLTRLDLSIT-RVTDAGVKGLAPFTKL 189
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
LN+ + +T L+ L PLKNL L+L
Sbjct: 190 TQLNLGGTLVTDTCLKDLAPLKNLAFLSL 218
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 105/199 (52%), Gaps = 2/199 (1%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD+D+K L+ L NL L + +KVTD+G+ L L KLT L L VT A L L+ L
Sbjct: 31 VTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAPL 90
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L L L Q++D G ++ + + +L VL LG ++TD L L L +L L L
Sbjct: 91 TNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQ 150
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
I + G+ L T L ++LS T ++D ++ LA + L LNL +TDT L L L
Sbjct: 151 ITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAPL 210
Query: 348 TGLTHLDLFGARITDSGAA 366
L L L +R GAA
Sbjct: 211 KNLAFLSL--SRNERDGAA 227
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 109/200 (54%), Gaps = 2/200 (1%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+++D ++ + + +L LNL ++TD L L LT L L L + D GL L
Sbjct: 30 KVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAP 89
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
LTNL ++ L T ++D L++LA L++L L L + Q+TD GL L L LT L+L
Sbjct: 90 LTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGET 149
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+IT++G L F L L++ +TDAGVK + + LT LNL +TD L+ ++
Sbjct: 150 QITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTL-VTDTCLKDLA 208
Query: 419 GLTGLVSLNVS-NSRITSAG 437
L L L++S N R +AG
Sbjct: 209 PLKNLAFLSLSRNERDGAAG 228
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 111/231 (48%), Gaps = 29/231 (12%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLS 112
+ G ++SVD + VTD+ L L NL L N C+ +++D GL+ L L+ LT L
Sbjct: 16 APGKPVISVDFALWKVTDADLKELAPLKNLTQL--NLCLTKVTDAGLKELSPLTKLTHLC 73
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+ +T G+K A L NL L+L +TD+
Sbjct: 74 LMQTK-VTDAGLKELAPLTNLTTLEL-------------------------GSTQVTDAG 107
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K L+ LTNL L + ++VTD+G+ L L+ LTLL L +T A + L+ L
Sbjct: 108 LKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQITEAGIKELAPFTKLTR 167
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L+L+ +++D G + + L LNLG +TD CL L L NL L+L
Sbjct: 168 LDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAPLKNLAFLSL 218
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
S++ + ++D L++LA L +L LNL ++TD GL L+ LT LTHL L ++TD+
Sbjct: 23 SVDFALWKVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDA 82
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G L NL +LE+ +TDAG+K + L++LT+L L + +TD L+ ++ L L
Sbjct: 83 GLKELAPLTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLG-STQVTDAGLKELAPLKSL 141
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
L + ++IT AG++ L P L L L +VT +K L
Sbjct: 142 TLLELGETQITEAGIKELAPFTKLTRLDLSITRVTDAGVKGL 183
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 1/171 (0%)
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ D L L L NL +NL T ++D L++L+ L+ L L L ++TD GL L L
Sbjct: 31 VTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAPL 90
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
T LT L+L ++TD+G L NL L + +TDAG+K + L SLTLL L +
Sbjct: 91 TNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGET- 149
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+T+ ++ ++ T L L++S +R+T AG++ L P L L L VT
Sbjct: 150 QITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVT 200
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 19 CLTEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
CLT+V+ ++ + L LCL Q V D + +A ++L +++L + VTD+GL
Sbjct: 51 CLTKVTDAGLKELSPLTKLTHLCLMQT-KVTDAGLKELAPL-TNLTTLELGSTQVTDAGL 108
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L +NL L Q++D GL+ L L +LT L IT G+K A L
Sbjct: 109 KELAPLTNLTVLTLG-STQVTDAGLKELAPLKSLTLLELGETQ-ITEAGIKELAPFTKLT 166
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+LDL G+ L KL LN+ +TD+ +K L+ L NL L +S
Sbjct: 167 RLDLSITRVTDAGVKGLAPFTKLTQLNL-GGTLVTDTCLKDLAPLKNLAFLSLS 219
>gi|290980745|ref|XP_002673092.1| predicted protein [Naegleria gruberi]
gi|284086673|gb|EFC40348.1| predicted protein [Naegleria gruberi]
Length = 498
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 162/356 (45%), Gaps = 33/356 (9%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNLKGLMK 156
E L + L L+ N+ I G K L L L + C I L +LK L
Sbjct: 98 EILDSMKELKKLNIEYNSNIDPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTY 157
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L + N I K + + LK L I+ + + G Y+ GL++LT LN+ +
Sbjct: 158 L----LITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEI 213
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T DG + S++ L VLN+ N I DE + G+
Sbjct: 214 TV------------------------DGAKFISEMKQLTVLNIIGNNICDEGAKFISGMK 249
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L +L++ IG+ G ++ + N+ +N+ F I+DG ++ + L LN+++R I
Sbjct: 250 QLTNLDISVNNIGENGAKYVSEMMNITKLNIGFNSINDG-VKCFGEMKQLTDLNVNSRCI 308
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
G+ ++S LTHL + I+ A ++ KNL L+I + D GV+ I +++
Sbjct: 309 GSNGVEYISSFNQLTHLSIAKNLISLYEAMHISQMKNLIKLDISDNDIGDNGVQSISEMN 368
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
LT LN+S + ++T ++ I + L L +++ I + G + + +K+L L++
Sbjct: 369 QLTELNVS-SIDITPIGIQYICKMDNLTYLISAHNNIGAKGAKQISEMKHLAQLSI 423
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 151/347 (43%), Gaps = 28/347 (8%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G +++ + L L NN I +G K +GL L L++ G + + +L
Sbjct: 169 GAKYIGEMKQLKQLHIANNN-IGPEGAKYISGLEQLTFLNIRANEITVDGAKFISEMKQL 227
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
LNI N I D K +SG+ L +L IS + + ++G Y+ + +T LN+ G
Sbjct: 228 TVLNI-IGNNICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMMNITKLNI-GFNSI 285
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+ + L LN+N + +G E S L L++ N I+ +H+ + N
Sbjct: 286 NDGVKCFGEMKQLTDLNVNSRCIGSNGVEYISSFNQLTHLSIAKNLISLYEAMHISQMKN 345
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L++ IGD G ++ ++ ++ L LN+ + IT
Sbjct: 346 LIKLDISDNDIGDNG------------------------VQSISEMNQLTELNVSSIDIT 381
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
G+ + + LT+L I GA + K+L L I + D G K I ++
Sbjct: 382 PIGIQYICKMDNLTYLISAHNNIGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQ 441
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
LT L++ N + D+ ++ + G+ L LN ++ I+ G ++++ +
Sbjct: 442 LTFLDIGYN-EIGDEGVKFLCGMKQLTRLNTVDNNISDEGEKYIREM 487
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 142/303 (46%), Gaps = 3/303 (0%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G +++ GL LT L+ R N IT G K + + L L++ G + G
Sbjct: 189 IGPEGAKYISGLEQLTFLNIRAN-EITVDGAKFISEMKQLTVLNIIGNNICDEGAKFISG 247
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L +L+I N I ++ K +S + N+ L I + + D G+ +++LT LN+
Sbjct: 248 MKQLTNLDIS-VNNIGENGAKYVSEMMNITKLNIGFNSIND-GVKCFGEMKQLTDLNVNS 305
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + ++ +S+ L +L++ + +S S++ +L L++ N+I D + +
Sbjct: 306 RCIGSNGVEYISSFNQLTHLSIAKNLISLYEAMHISQMKNLIKLDISDNDIGDNGVQSIS 365
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L LN+ S I G+ + + NL + + I ++++ + L L++
Sbjct: 366 EMNQLTELNVSSIDITPIGIQYICKMDNLTYLISAHNNIGAKGAKQISEMKHLAQLSIYH 425
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+ D G ++ + LT LD+ I D G +L K L L ++D G K+I+
Sbjct: 426 NAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKFLCGMKQLTRLNTVDNNISDEGEKYIR 485
Query: 394 DLS 396
+++
Sbjct: 486 EMN 488
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 116/257 (45%), Gaps = 6/257 (2%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKIGSLK 255
+ +L+ + L ++N E LDS+ L L N+ + G + + L
Sbjct: 76 LPFLENIANLRVINNEEIGFNCEILDSMKELKKL---NIEYNSNIDPSGFKYICSLEQLT 132
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L + F HL L +L L + IG EG + + L+ ++++ I
Sbjct: 133 DLYMTFCYFRLPIAKHLPSLKSLTYLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPE 192
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+ ++GL L LN+ A +IT G ++ + LT L++ G I D GA ++ K L
Sbjct: 193 GAKYISGLEQLTFLNIRANEITVDGAKFISEMKQLTVLNIIGNNICDEGAKFISGMKQLT 252
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
+L+I + + G K++ ++ ++T LN+ N + ++ + L LNV++ I S
Sbjct: 253 NLDISVNNIGENGAKYVSEMMNITKLNIGFNS--INDGVKCFGEMKQLTDLNVNSRCIGS 310
Query: 436 AGLRHLKPLKNLRSLTL 452
G+ ++ L L++
Sbjct: 311 NGVEYISSFNQLTHLSI 327
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 27/157 (17%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ +L+ +D+S +D+ D+G+ + + + L L+ + I I+ G++++ + NLT L
Sbjct: 341 SQMKNLIKLDISDNDIGDNGVQSISEMNQLTELNVS-SIDITPIGIQYICKMDNLTYLIS 399
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I A+G K + + +L +L + + N + D
Sbjct: 400 AHNN-IGAKGAKQISEMKHLAQLSI-------------------------YHNAVGDEGA 433
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
K +S + L L I +++ D G+ +L G+++LT LN
Sbjct: 434 KFISEMEQLTFLDIGYNEIGDEGVKFLCGMKQLTRLN 470
>gi|254411467|ref|ZP_05025244.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196181968|gb|EDX76955.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 577
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 142/412 (34%), Positives = 205/412 (49%), Gaps = 63/412 (15%)
Query: 67 SDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+D+T SGL +L + S LD N I ++ L GL+NLT L+ NN IT
Sbjct: 171 TDITPLSGLTNLTELS----LDNNQIIDVT-----PLSGLANLTELNLY-NNQITE---V 217
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ +GL NL +L L VNL GL L L + I D+ PLSGLTNL L
Sbjct: 218 SLSGLTNLTELYLSNNQITE---VNLSGLTNLRRLYLSTNQII---DISPLSGLTNLTEL 271
Query: 186 QISCSKVTDSGIAYLKGLQKLT-----------------LLNLEGCPVTAACLDSLSALG 228
+ +++ D ++ L GL LT L NL G +++ + +S L
Sbjct: 272 DLKYNQIKD--VSPLSGLTNLTELDLKYNQIKDVSPLSGLTNLTGLYLSSNQIKDISPLS 329
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L NL LSD+ + S + +L L+LG N+I D + L GL NL L+L S
Sbjct: 330 GLT--NLTLLYLSDNKIKDISPLSGLINLTGLDLGSNKIKD--ISPLSGLINLTGLDLSS 385
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
I D + L+GLTNL +L I++ SL +GL++L L L QITD +++L+
Sbjct: 386 NKIKD--ISPLSGLTNLTWFSLDNNQITEVSL---SGLTNLTELYLRNNQITD--VSSLS 438
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
LT LT L L +ITD + L NL L + +TD + L++LT+LNLS
Sbjct: 439 ELTNLTRLVLNNNQITD--VSPLSGLTNLTVLNLSNNQITDVSLSG---LTNLTVLNLSN 493
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
N +TD + +SGLT L LN+ +++IT + L L NL L L + ++
Sbjct: 494 N-QITD--VSPLSGLTNLTGLNLISNQITDVSI--LSGLTNLTVLILSNNQI 540
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 134/385 (34%), Positives = 197/385 (51%), Gaps = 49/385 (12%)
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHL 102
N++ +V S ++L + LS + +T+ ++L +NL+ L N I IS L
Sbjct: 211 NNQITEVSLSGLTNLTELYLSNNQITE---VNLSGLTNLRRLYLSTNQIIDIS-----PL 262
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE----RCTRIHGGLVNLKGLMKLE 158
GL+NLT L + N + + +GL NL +LDL+ + GL NL GL L
Sbjct: 263 SGLTNLTELDLKYNQI---KDVSPLSGLTNLTELDLKYNQIKDVSPLSGLTNLTGLY-LS 318
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
S IK D+ PLSGLTNL L +S +K+ D I+ L GL LT L+L +
Sbjct: 319 SNQIK--------DISPLSGLTNLTLLYLSDNKIKD--ISPLSGLINLTGLDLGSNKI-- 366
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ LS L +L L+L+ ++ D S + +L +L N+IT+ V L GLTNL
Sbjct: 367 KDISPLSGLINLTGLDLSSNKIKD--ISPLSGLTNLTWFSLDNNQITE---VSLSGLTNL 421
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L L + I D + +L+ LTNL + L+ I+D S L+GL++L LNL QITD
Sbjct: 422 TELYLRNNQITD--VSSLSELTNLTRLVLNNNQITDVS--PLSGLTNLTVLNLSNNQITD 477
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L+ LT+ LT L+L +ITD + L NL L + +TD + + L++L
Sbjct: 478 VSLSGLTN---LTVLNLSNNQITD--VSPLSGLTNLTGLNLISNQITDVSI--LSGLTNL 530
Query: 399 TLLNLSQNCNLTDKTLELISGLTGL 423
T+L LS N K + +SGLT L
Sbjct: 531 TVLILSNN---QIKDVSPLSGLTNL 552
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 144/294 (48%), Gaps = 52/294 (17%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D+ PLSGLTNL L + +++ D + LS L +L
Sbjct: 83 TDISPLSGLTNLIGLSLWGNQIKD--------------------------VTPLSELTNL 116
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LNL Q+ D S++ +L LNL N+I D + L GL NL L L S I D
Sbjct: 117 TELNLYNNQIKD--VTPLSELTNLTELNLYNNQIKD--VTPLSGLINLTRLILFSNQITD 172
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+ L+GLTNL ++L I D + L+GL++L LNL QIT+ +L+ LT L
Sbjct: 173 --ITPLSGLTNLTELSLDNNQIID--VTPLSGLANLTELNLYNNQITE---VSLSGLTNL 225
Query: 351 THLDLFGARITDSGAAYLRNFKNL-----RSLEICG-GGLT-----DAGVKHIKDLSSLT 399
T L L +IT+ + L N + L + ++I GLT D IKD+S L+
Sbjct: 226 TELYLSNNQITEVNLSGLTNLRRLYLSTNQIIDISPLSGLTNLTELDLKYNQIKDVSPLS 285
Query: 400 -LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L NL++ +L ++ +S L+GL N++ ++S ++ + PL L +LTL
Sbjct: 286 GLTNLTE-LDLKYNQIKDVSPLSGLT--NLTGLYLSSNQIKDISPLSGLTNLTL 336
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 116/236 (49%), Gaps = 30/236 (12%)
Query: 62 VDLSGSDVTDSGLIHLKDCS------NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L+G D+ G +KD S NL LD + +I D + L GL+NLT S
Sbjct: 354 INLTGLDL---GSNKIKDISPLSGLINLTGLDLSSN-KIKD--ISPLSGLTNLTWFSLD- 406
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN IT + +GL NL +L L + + ++ L +L +L N +D+ P
Sbjct: 407 NNQITE---VSLSGLTNLTELYLR-----NNQITDVSSLSELTNLTRLVLNNNQITDVSP 458
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
LSGLTNL L +S +++TD L GL LT+LNL +T LS L +L LNL
Sbjct: 459 LSGLTNLTVLNLSNNQITD---VSLSGLTNLTVLNLSNNQITDVS--PLSGLTNLTGLNL 513
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
Q++D S + +L VL L N+I D + L GLTNL L L I +
Sbjct: 514 ISNQITD--VSILSGLTNLTVLILSNNQIKD--VSPLSGLTNLRRLYLGDNPIPQQ 565
>gi|186701224|gb|ACC91251.1| leucine-rich repeat family protein [Arabidopsis halleri]
Length = 600
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 128/455 (28%), Positives = 203/455 (44%), Gaps = 91/455 (20%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMK 156
G +H ++ ++ R ++I A+ M G +NL+ L+L C RI+ L + GL
Sbjct: 58 GFKH-----SVENIDLRGESSINAEWMAYIGGFVNLISLNLSDCQRINSSTLWPITGLTS 112
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L L++ C +TD+ +K L ++NLK L IS + VT GI+ L L+KL+LL+L G PV
Sbjct: 113 LTELDLSRCWKVTDAGIKHLQSVSNLKKLWISQTGVTKVGISLLASLKKLSLLDLGGLPV 172
Query: 217 TAACLDSLSALGSLFYL-------------------NLNRCQLSDDGCEKFSKIGSLKVL 257
T L +L AL L YL NL+ LS + I L+ L
Sbjct: 173 TDHNLIALQALTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQTPNIPHLECL 232
Query: 258 NLGFNEITDECLVH---------------------------------------------- 271
++ I E H
Sbjct: 233 HMNMCTIVSEPKTHSSLASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTSLQNFSF 292
Query: 272 LKGLTNLESLNLDSCGIGDE--GLVNLTGLTNLESINLSFTGISDGSLRKLAG-LSSLKS 328
L+ + NLE L+L S GD+ G V G NL ++N+S T I+ + LAG + L++
Sbjct: 293 LETMINLEHLDLSSTAFGDDSVGFVACVG-ENLRNLNVSETKITSAGVGNLAGHVPQLET 351
Query: 329 LNLDARQITDTGLAALTSLT--------GLTHLDLF------GARITDSGAAYLRNFKNL 374
+L + D + ++++ G+T + F + A L++ +L
Sbjct: 352 FSLSQTFVDDLSILLISTMMPCVKALDLGMTSIRGFILQQSPQEEQAEPSLAALQSLTSL 411
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
++L + L D + + L+ LT L+L ++ +LTD TL +S L LVSL V ++ +T
Sbjct: 412 KTLSLEHPYLGDTALSALSSLTGLTHLSL-RSTSLTDSTLHHLSSLPNLVSLGVRDAVLT 470
Query: 435 SAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSR 468
S GL +P K LR+L L+ C +T +DI L R
Sbjct: 471 SNGLEKFRPPKRLRTLDLKGCWLLTKDDIAGLCKR 505
>gi|290970038|ref|XP_002668017.1| predicted protein [Naegleria gruberi]
gi|284081041|gb|EFC35273.1| predicted protein [Naegleria gruberi]
Length = 306
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 129/247 (52%), Gaps = 2/247 (0%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K + DS +K +S + L SL IS +++ G+ ++ G+++LT L++ +
Sbjct: 55 INLKVFRYLLDSFEKLKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFNQAS 114
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+S + L L +++ + D+G + S++ L LNL +NEI DE ++ +
Sbjct: 115 DEGAKYISEMKQLTSLGISKNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQ 174
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L SL++ S I EG+ + + L S+N+ + GI + ++ + L SLN+ +I
Sbjct: 175 LTSLDISSNLIDVEGVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNNEIG 234
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D G ++ + L L + +I D GA Y+ + L SL I G + D G K+I D+
Sbjct: 235 DEGAKYISEMKQLISLIISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAKYISDMKQ 294
Query: 398 LTLLNLS 404
LT L++S
Sbjct: 295 LTSLDIS 301
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 1/186 (0%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
E L + + L SL++ IG +G+ ++G+ L S+++SF SD + ++ + L
Sbjct: 68 EKLKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQL 127
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
SL + I D G ++ + LT L+L+ I D GA Y+ + L SL+I +
Sbjct: 128 TSLGISKNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLIDV 187
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
GVK IK++ LT LN+ N + + + IS + L SLN++N+ I G +++ +K
Sbjct: 188 EGVKFIKEMKQLTSLNIYYN-GIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQ 246
Query: 447 LRSLTL 452
L SL +
Sbjct: 247 LISLII 252
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 118/236 (50%), Gaps = 3/236 (1%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
L + D L SLD +F QI G++ + G+ LTSL N A + +G K + + L
Sbjct: 70 LKFISDMKRLTSLDISFN-QIGVQGVKFISGMKQLTSLDISFNQA-SDEGAKYISEMKQL 127
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L + + G + + +L SLN+ + N I D K +S + L SL IS + +
Sbjct: 128 TSLGISKNLIGDEGAKYISEMKQLTSLNL-YYNEICDEGAKYISEMEQLTSLDISSNLID 186
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
G+ ++K +++LT LN+ + +S + L LN+ ++ D+G + S++
Sbjct: 187 VEGVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQ 246
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
L L + N+I DE ++ + L SLN+ IGDEG ++ + L S+++SF
Sbjct: 247 LISLIISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAKYISDMKQLTSLDISF 302
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S++L +++ D G ++ + L SLD + + I G++ ++ + LTSL+
Sbjct: 146 SEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNL-IDVEGVKFIKEMKQLTSLNI 204
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L L++ G + + +L SL I N I D
Sbjct: 205 YY-NGIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQLISLIIS-RNQIGDEGA 262
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K + + L SL IS +++ D G Y+ +++LT L++
Sbjct: 263 KYICEMEQLTSLNISGNEIGDEGAKYISDMKQLTSLDI 300
>gi|168700559|ref|ZP_02732836.1| hypothetical protein GobsU_13597 [Gemmata obscuriglobus UQM 2246]
Length = 446
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 154/342 (45%), Gaps = 10/342 (2%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L L+GL +T ++F ++ +T + AG +L L C R+ G + L +L
Sbjct: 95 LATLKGLKCVTEVTFA-SDRLTDTDLACIAGFEHLRSFGLRDCGRVTGAGFGV--LAQLP 151
Query: 159 SLNIKWCN---CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L KW + +TD L + L+++ + +K TD+G+ L L L +N+ P
Sbjct: 152 RL--KWVSLVGPVTDEAGPHLGRIKTLETVVLYRTKFTDAGLKELAALPALGSVNVTATP 209
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
VT + L ++ + + G E S + L L L +TD L HL
Sbjct: 210 VTGTAF-AEPGWSRLREIDATQTAFNAAGLEAVSALPVLGTLTLDATAVTDSGLKHLARA 268
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L+ L+L + D G+ L G+ L +NL TG++ + + L+ LNL +
Sbjct: 269 RALQELSLADTPVADTGVAALAGVQTLRVLNLERTGVTGAAFATFPVPAELRKLNLAETR 328
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
TD + L L LT+L L G +TD+G A L + K L +L++ G D + L
Sbjct: 329 FTDASGSHLARLPALTNLSLSGCDVTDAGLARLADLKKLANLDLTGTKAGDGAAEVAGTL 388
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
+ L +++ + LTD L+ + L L V S++T G
Sbjct: 389 AELEVVSF-RGTQLTDAGLKAAAHGARLRFLYVRGSKVTKRG 429
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 163/364 (44%), Gaps = 31/364 (8%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T G A G + + +ER + L LKGL + + + +TD+D+ ++G
Sbjct: 70 VTVHGPGADGGCV----VRVERTADLAPALATLKGLKCVTEVTFA-SDRLTDTDLACIAG 124
Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+L+S + C +VT +G L L +L ++L G PVT L + +L + L R
Sbjct: 125 FEHLRSFGLRDCGRVTGAGFGVLAQLPRLKWVSLVG-PVTDEAGPHLGRIKTLETVVLYR 183
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-----------------------LKG 274
+ +D G ++ + + +L +N+ +T +
Sbjct: 184 TKFTDAGLKELAALPALGSVNVTATPVTGTAFAEPGWSRLREIDATQTAFNAAGLEAVSA 243
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L L +L LD+ + D GL +L L+ ++L+ T ++D + LAG+ +L+ LNL+
Sbjct: 244 LPVLGTLTLDATAVTDSGLKHLARARALQELSLADTPVADTGVAALAGVQTLRVLNLERT 303
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+T A L L+L R TD+ ++L L +L + G +TDAG+ + D
Sbjct: 304 GVTGAAFATFPVPAELRKLNLAETRFTDASGSHLARLPALTNLSLSGCDVTDAGLARLAD 363
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
L L L+L+ D E+ L L ++ +++T AGL+ LR L +
Sbjct: 364 LKKLANLDLT-GTKAGDGAAEVAGTLAELEVVSFRGTQLTDAGLKAAAHGARLRFLYVRG 422
Query: 455 CKVT 458
KVT
Sbjct: 423 SKVT 426
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 130/301 (43%), Gaps = 15/301 (4%)
Query: 77 LKDCSNLQSLDFNFCIQ------------ISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
L+DC + F Q ++D HL + L ++ R T G+
Sbjct: 133 LRDCGRVTGAGFGVLAQLPRLKWVSLVGPVTDEAGPHLGRIKTLETVVLYRTK-FTDAGL 191
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
K A L L +++ T + G G +L ++ + ++ +S L L +
Sbjct: 192 KELAALPALGSVNVT-ATPVTGTAFAEPGWSRLREIDATQ-TAFNAAGLEAVSALPVLGT 249
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L + + VTDSG+ +L + L L+L PV + +L+ + +L LNL R ++
Sbjct: 250 LTLDATAVTDSGLKHLARARALQELSLADTPVADTGVAALAGVQTLRVLNLERTGVTGAA 309
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
F L+ LNL TD HL L L +L+L C + D GL L L L +
Sbjct: 310 FATFPVPAELRKLNLAETRFTDASGSHLARLPALTNLSLSGCDVTDAGLARLADLKKLAN 369
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
++L+ T DG+ L+ L+ ++ Q+TD GL A L L + G+++T G
Sbjct: 370 LDLTGTKAGDGAAEVAGTLAELEVVSFRGTQLTDAGLKAAAHGARLRFLYVRGSKVTKRG 429
Query: 365 A 365
A
Sbjct: 430 A 430
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 80/207 (38%), Gaps = 27/207 (13%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L + VTDSGL HL LQ L + + G
Sbjct: 252 LDATAVTDSGLKHLARARALQELSLA--------------------------DTPVADTG 285
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ A AG+ L L+LER +L LN+ TD+ L+ L L
Sbjct: 286 VAALAGVQTLRVLNLERTGVTGAAFATFPVPAELRKLNLAETR-FTDASGSHLARLPALT 344
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L +S VTD+G+A L L+KL L+L G + L L ++ QL+D
Sbjct: 345 NLSLSGCDVTDAGLARLADLKKLANLDLTGTKAGDGAAEVAGTLAELEVVSFRGTQLTDA 404
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLV 270
G + + L+ L + +++T V
Sbjct: 405 GLKAAAHGARLRFLYVRGSKVTKRGAV 431
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++ LSG DVTD+GL L D L +LD + DG E L+ L +SF R
Sbjct: 341 PALTNLSLSGCDVTDAGLARLADLKKLANLDLT-GTKAGDGAAEVAGTLAELEVVSF-RG 398
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+T G+KA A L R + G V +G + + + C + +
Sbjct: 399 TQLTDAGLKAAAHGARL------RFLYVRGSKVTKRGAVDAGKVVREGCRIVAE 446
>gi|168701675|ref|ZP_02733952.1| hypothetical protein GobsU_19277 [Gemmata obscuriglobus UQM 2246]
Length = 407
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 113/191 (59%), Gaps = 11/191 (5%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGI--------AYLKGLQKLTLLNLEGCPVTAA 219
+TD+ +K L+ L L +L +S ++VTD+G+ GL+ LT L+L VT A
Sbjct: 46 VTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTFTRVTDA 105
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ +L+AL +L L+L+ ++D+G ++ + +G+L L LG +TD + L L L
Sbjct: 106 GVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLT 165
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+L+L S G+ D G L+GLT L ++ +SFTG++D +++LA L +L L L A +TD
Sbjct: 166 ALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLELAATGVTDA 225
Query: 340 G---LAALTSL 347
G LAAL SL
Sbjct: 226 GVKELAALKSL 236
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 119/232 (51%), Gaps = 22/232 (9%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
T D +P++ + +S ++VTD+G+ L L+ LT L+L VT A + +L+AL
Sbjct: 29 TTPDGRPVT------KVSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALK 82
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L L L L L+L F +TD + L L L +L+L +
Sbjct: 83 ALTALGLK----------------GLTTLDLTFTRVTDAGVKALAALKALTTLDLSHTLV 126
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
DEGL L L L ++ L T ++D +++LA L L +L+L + +TD G L+ LT
Sbjct: 127 TDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLTALDLGSMGVTDAGAKELSGLT 186
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
GLT L + +TD+G L KNL LE+ G+TDAGVK + L SL L
Sbjct: 187 GLTALGMSFTGVTDAGVKELAALKNLTHLELAATGVTDAGVKELAALKSLVL 238
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 103/188 (54%), Gaps = 9/188 (4%)
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL--------SSLKSLNLDARQITDT 339
+ D GL L L L +++LS+T ++D ++ LA L L +L+L ++TD
Sbjct: 46 VTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTFTRVTDA 105
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
G+ AL +L LT LDL +TD G L L +L + G +TDAGVK + L LT
Sbjct: 106 GVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLT 165
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
L+L + +TD + +SGLTGL +L +S + +T AG++ L LKNL L L + VT
Sbjct: 166 ALDLG-SMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLELAATGVTD 224
Query: 460 NDIKRLQS 467
+K L +
Sbjct: 225 AGVKELAA 232
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 9/199 (4%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL--------VNLTGLTNLESINLS 308
++L F +TD L L L L +L+L + D G+ + GL L +++L+
Sbjct: 39 VSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLT 98
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
FT ++D ++ LA L +L +L+L +TD GL L +L L L L G +TD+G L
Sbjct: 99 FTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKEL 158
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
K L +L++ G+TDAG K + L+ LT L +S +TD ++ ++ L L L +
Sbjct: 159 AALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFT-GVTDAGVKELAALKNLTHLEL 217
Query: 429 SNSRITSAGLRHLKPLKNL 447
+ + +T AG++ L LK+L
Sbjct: 218 AATGVTDAGVKELAALKSL 236
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 17/210 (8%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE-----------HLRG 104
G + V LS + VTD+GL L L +LD ++ +++D G++ L+G
Sbjct: 33 GRPVTKVSLSFTRVTDTGLKELAALKGLTTLDLSY-TEVTDAGVKALAALKALTALGLKG 91
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L+ L L+F R +T G+KA A L L LDL GL L L L +L +
Sbjct: 92 LTTL-DLTFTR---VTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLG- 146
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+TD+ +K L+ L L +L + VTD+G L GL LT L + VT A + L
Sbjct: 147 GTSVTDAGVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKEL 206
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
+AL +L +L L ++D G ++ + + SL
Sbjct: 207 AALKNLTHLELAATGVTDAGVKELAALKSL 236
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 16/196 (8%)
Query: 59 LLSVDLSGSDVTDSGL--------IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
L ++DLS ++VTD+G+ + L +LD F +++D G++ L L LT+
Sbjct: 60 LTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTF-TRVTDAGVKALAALKALTT 118
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
L + +T +G+K A L L L L + G+ L L L +L++ +TD
Sbjct: 119 LDLS-HTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLTALDLG-SMGVTD 176
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ K LSGLT L +L +S + VTD+G+ L L+ LT L L VT A + L+AL SL
Sbjct: 177 AGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLELAATGVTDAGVKELAALKSL 236
Query: 231 FYLNLNRCQLSDDGCE 246
CQ ++ GC
Sbjct: 237 VL-----CQANELGCH 247
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK--------HIKDLSSLTLL 401
+T + L R+TD+G L K L +L++ +TDAGVK L LT L
Sbjct: 36 VTKVSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTL 95
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+L+ +TD ++ ++ L L +L++S++ +T GL+ L L L +L L VT
Sbjct: 96 DLTFT-RVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAG 154
Query: 462 IKRLQS 467
+K L +
Sbjct: 155 VKELAA 160
>gi|290980468|ref|XP_002672954.1| predicted protein [Naegleria gruberi]
gi|284086534|gb|EFC40210.1| predicted protein [Naegleria gruberi]
Length = 349
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 126/248 (50%), Gaps = 7/248 (2%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
+ ++ +++LT LN+ G + +S + L LN++ + D+G + S++ L
Sbjct: 96 LKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLIS 155
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316
LN+ NEI DE ++ + L SL++ IGDEG ++G+ L S+N+ +T I
Sbjct: 156 LNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGIEG 215
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+ ++ + L SLN+ +I G+ ++ + LT L++ R D GA ++ K L S
Sbjct: 216 AKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQLTS 275
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L ICG VK I ++ LT LN+ N + + + IS + L SLN+ +RI
Sbjct: 276 LNICG------KVKFISEMKQLTSLNIRGN-RIGVEGAKYISEMKQLTSLNIRGNRIGDQ 328
Query: 437 GLRHLKPL 444
GL H L
Sbjct: 329 GLNHENSL 336
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 267 ECLVHLKGLTNLE---SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
E + LK +T ++ SLN+ IG EG ++ + L S+N+S+ I D + ++ +
Sbjct: 91 EAIEQLKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEM 150
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
L SLN+ +I D G ++ + LT LD+ I D GA Y+ K L SL I
Sbjct: 151 KQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTL 210
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
+ G K I ++ LT LN+S+N + + ++ IS + L SLN+S +R G + +
Sbjct: 211 IGIEGAKFISEMKQLTSLNISEN-EIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISE 269
Query: 444 LKNLRSLTL 452
+K L SL +
Sbjct: 270 MKQLTSLNI 278
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 146/308 (47%), Gaps = 16/308 (5%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF--AGLINLVKLDLERCTRIHG 146
N C IS ++ S L + F+ N IT + ++ F + +N + +D++ T +
Sbjct: 36 NNCTLISKQFFNVIKERSKLV-IQFKNN--ITEKRVELFMKSQFMNSI-VDVKFSTNLLE 91
Query: 147 GLVNLK---GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
+ LK + +L SLNI+ N I K +S + L SL IS + + D G Y+ +
Sbjct: 92 AIEQLKFVTEMKQLTSLNIR-GNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEM 150
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
++L LN+ + +S + L L+++ + D+G + S + L LN+ +
Sbjct: 151 KQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTL 210
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
I E + + L SLN+ IG EG+ ++ + L S+N+S+ D + ++ +
Sbjct: 211 IGIEGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEM 270
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
L SLN+ + + ++ + LT L++ G RI GA Y+ K L SL I G
Sbjct: 271 KQLTSLNICGK------VKFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNR 324
Query: 384 LTDAGVKH 391
+ D G+ H
Sbjct: 325 IGDQGLNH 332
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 9/191 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L+S+++ +++ D G ++ + L SLD ++ I I D G +++ G+ LTSL+
Sbjct: 148 SEMKQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNI-IGDEGAKYISGMKQLTSLNI 206
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
I +G K + + L L++ G+ + + +L SLNI + N D
Sbjct: 207 YY-TLIGIEGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISY-NRTGDEGA 264
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I C KV ++ +++LT LN+ G + +S + L L
Sbjct: 265 KFISEMKQLTSLNI-CGKV-----KFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSL 318
Query: 234 NLNRCQLSDDG 244
N+ ++ D G
Sbjct: 319 NIRGNRIGDQG 329
>gi|290993192|ref|XP_002679217.1| predicted protein [Naegleria gruberi]
gi|284092833|gb|EFC46473.1| predicted protein [Naegleria gruberi]
Length = 310
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 149/286 (52%), Gaps = 10/286 (3%)
Query: 197 IAYLKGLQKLTL---LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
I LK L+KL + +LE V + +S L L LN+ C + + + +K+
Sbjct: 32 ICQLKNLKKLDVSYNYHLENEVV-----ELISELRELRELNIRYCDIGVEEVKYLTKLDK 86
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
L L++G N+I + L + +L L++ C IGDEG ++T L L +N++ GI
Sbjct: 87 LHSLDIGINQIYADGAKLLSTMKSLTKLDVAECEIGDEGCQSITELYQLTDLNINGDGIG 146
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
G + + +LKSL++ + G +++ L+ L L++ + I + G LR KN
Sbjct: 147 VGGANCIGQMRNLKSLDISNNFFGNYGAKSISELSQLEILNVSYSDIDEVGVYQLRKLKN 206
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L SL I +TD G K+I +L LT L++S N + + + IS ++ L SLN+S++ I
Sbjct: 207 LTSLSIHHNEITDEGTKYIVELDQLTHLDISNN-QIETEGAKSISEMSQLTSLNISSNII 265
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
G +++ LK L SL + C+V+ ++ ++ + L +L + E
Sbjct: 266 GDEGAQYISHLKKLTSLNVSKCRVSEEGVESIR-KQLKHLKTLEVE 310
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 142/291 (48%), Gaps = 3/291 (1%)
Query: 105 LSNLTSLSFR-RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNI 162
LSN ++ +N+ IT + K L NL KLD+ + +V L L +L LNI
Sbjct: 9 LSNFIFATYAGKNSEITVELAKCICQLKNLKKLDVSYNYHLENEVVELISELRELRELNI 68
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
++C+ I ++K L+ L L SL I +++ G L ++ LT L++ C +
Sbjct: 69 RYCD-IGVEEVKYLTKLDKLHSLDIGINQIYADGAKLLSTMKSLTKLDVAECEIGDEGCQ 127
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
S++ L L LN+N + G ++ +LK L++ N + + L+ LE LN
Sbjct: 128 SITELYQLTDLNINGDGIGVGGANCIGQMRNLKSLDISNNFFGNYGAKSISELSQLEILN 187
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+ I + G+ L L NL S+++ I+D + + L L L++ QI G
Sbjct: 188 VSYSDIDEVGVYQLRKLKNLTSLSIHHNEITDEGTKYIVELDQLTHLDISNNQIETEGAK 247
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+++ ++ LT L++ I D GA Y+ + K L SL + +++ GV+ I+
Sbjct: 248 SISEMSQLTSLNISSNIIGDEGAQYISHLKKLTSLNVSKCRVSEEGVESIR 298
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
Q +L S+D+S + + G + + S L+ L+ ++ I + G+ LR L NLTSLS
Sbjct: 155 QMRNLKSLDISNNFFGNYGAKSISELSQLEILNVSYS-DIDEVGVYQLRKLKNLTSLSI- 212
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+N IT +G K L L LD+ N I K
Sbjct: 213 HHNEITDEGTKYIVELDQLTHLDISN-------------------------NQIETEGAK 247
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+S ++ L SL IS + + D G Y+ L+KLT LN+ C V+ ++S+
Sbjct: 248 SISEMSQLTSLNISSNIIGDEGAQYISHLKKLTSLNVSKCRVSEEGVESI 297
>gi|296123881|ref|YP_003631659.1| serine/threonine protein kinase-related protein [Planctomyces
limnophilus DSM 3776]
gi|296016221|gb|ADG69460.1| Serine/threonine protein kinase-related protein [Planctomyces
limnophilus DSM 3776]
Length = 1655
Score = 105 bits (262), Expect = 5e-20, Method: Composition-based stats.
Identities = 125/469 (26%), Positives = 196/469 (41%), Gaps = 62/469 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS------ 112
L V L S ++D+ L L++ L L+ + C +++ + + L++L + +
Sbjct: 1171 LEKVRLGFSSISDAHLKPLENLPKLTHLELSQCEKVTGAAIRKFKHLTHLEAWAVPVGDD 1230
Query: 113 ---------FRR----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
FR IT + + AF L +L L + + L LK +L
Sbjct: 1231 DLAPLKDNPFRNLDLGGTRITGKALAAFTNLSDLRSSRLAFTSIKNKDLAALKDCHRLTF 1290
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L + + I D ++ + L L+SL++ SKVT+ YL L L ++L VT
Sbjct: 1291 LAL-YNTGIGDEGVREICELKALRSLELQGSKVTNEVFFYLMKLPHLLSVDLRYTQVTPE 1349
Query: 220 CLDSLSALGSLFYLN-----LNRCQLSDDGCEKFSKIGSLK---VLNLGFNEITDECLVH 271
++S L + L R + + D K +K VL G D
Sbjct: 1350 AIESFRKQKPLCEVKCDAGVLPRWEPNGDELVKNAKADRAAAAFVLKQGKYVWLDNAKDP 1409
Query: 272 LKGLTNLESLNL-DSCGIGDEGLVNLT--------GLTNLESINLSFTGISDGSLRKLAG 322
L G + +L GI EGL LT G NL + L GI+D LR G
Sbjct: 1410 LHGDPAILPPHLFKLTGISLEGLKTLTPRDFEIFKGCQNLSDLQLLNMGITDEHLRAFEG 1469
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLT-----------------------HLDLFGAR 359
+S+ L LD + +T GL+ + LT +L+L G R
Sbjct: 1470 TTSITKLKLDGQAVTSKGLSYFSGCKRLTFLSVWATQADDKFIQSIASPDYTYLNLGGTR 1529
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
ITD+ A + +NL + GLTD G++H+ +LT L L+ LTD + ++
Sbjct: 1530 ITDASIAAFESLQNLEMATLNFTGLTDEGIEHLASAENLTYLGLNHT-RLTDASAKVFLK 1588
Query: 420 LTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQS 467
L L L +SN++ + GL L L NL+ L L KVTA+ + + QS
Sbjct: 1589 LNQLEELTLSNTQFSDQGLLLLVNALPNLKRLNLLETKVTADSVDKFQS 1637
Score = 63.9 bits (154), Expect = 2e-07, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 6/180 (3%)
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+G +LE + L F+ ISD L+ L L L L L Q AA+ LTHL+
Sbjct: 1165 FSGCRDLEKVRLGFSSISDAHLKPLENLPKLTHLELS--QCEKVTGAAIRKFKHLTHLEA 1222
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+ + D A L++ R+L++ G +T + +LS L L+ ++ +K L
Sbjct: 1223 WAVPVGDDDLAPLKD-NPFRNLDLGGTRITGKALAAFTNLSDLRSSRLAFT-SIKNKDLA 1280
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
+ L L + N+ I G+R + LK LRSL L+ KVT L LP+L+S
Sbjct: 1281 ALKDCHRLTFLALYNTGIGDEGVREICELKALRSLELQGSKVTNEVFFYLMK--LPHLLS 1338
Score = 63.2 bits (152), Expect = 3e-07, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 34/240 (14%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
LT + FR + A+ + F+G +L K+ L +
Sbjct: 1146 LTGIEFRNKRDLDAKDFEVFSGCRDLEKVRLGFSS------------------------- 1180
Query: 168 ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
I+D+ +KPL L L L++S C KVT + I + + LT L PV D L+
Sbjct: 1181 ISDAHLKPLENLPKLTHLELSQCEKVTGAAI---RKFKHLTHLEAWAVPVGD---DDLAP 1234
Query: 227 LGSLFYLNLNR--CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
L + NL+ +++ F+ + L+ L F I ++ L LK L L L
Sbjct: 1235 LKDNPFRNLDLGGTRITGKALAAFTNLSDLRSSRLAFTSIKNKDLAALKDCHRLTFLALY 1294
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ GIGDEG+ + L L S+ L + +++ L L L S++L Q+T + +
Sbjct: 1295 NTGIGDEGVREICELKALRSLELQGSKVTNEVFFYLMKLPHLLSVDLRYTQVTPEAIESF 1354
Score = 60.5 bits (145), Expect = 2e-06, Method: Composition-based stats.
Identities = 103/458 (22%), Positives = 171/458 (37%), Gaps = 83/458 (18%)
Query: 61 SVDLSGSDVTDSGLIHLKD------CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
SV L+G + + + KD C +L+ + F ISD L+ L L LT L
Sbjct: 1143 SVQLTGIEFRNKRDLDAKDFEVFSGCRDLEKVRLGFS-SISDAHLKPLENLPKLTHLELS 1201
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSDM 173
+ +T ++ F L +L + G +L L N+ IT +
Sbjct: 1202 QCEKVTGAAIRKFKHLTHL------EAWAVPVGDDDLAPLKDNPFRNLDLGGTRITGKAL 1255
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ L++L+S +++ + + + +A LK +LT L L + + + L +L L
Sbjct: 1256 AAFTNLSDLRSSRLAFTSIKNKDLAALKDCHRLTFLALYNTGIGDEGVREICELKALRSL 1315
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI----- 288
L +++++ K+ L ++L + ++T E + + L + D+ G+
Sbjct: 1316 ELQGSKVTNEVFFYLMKLPHLLSVDLRYTQVTPEAIESFRKQKPLCEVKCDA-GVLPRWE 1374
Query: 289 --GDEGLVNLTGLTNLESINLS---------------------------FTGISDGSLRK 319
GDE + N + L TGIS L+
Sbjct: 1375 PNGDELVKNAKADRAAAAFVLKQGKYVWLDNAKDPLHGDPAILPPHLFKLTGISLEGLKT 1434
Query: 320 LA--------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
L G +L L L ITD L A T +T L L G +T G +Y
Sbjct: 1435 LTPRDFEIFKGCQNLSDLQLLNMGITDEHLRAFEGTTSITKLKLDGQAVTSKGLSYFSGC 1494
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
K L L + T A K I+ ++S D T LN+ +
Sbjct: 1495 KRLTFLSVWA---TQADDKFIQSIAS------------PDYTY-----------LNLGGT 1528
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 469
RIT A + + L+NL TL +T I+ L S +
Sbjct: 1529 RITDASIAAFESLQNLEMATLNFTGLTDEGIEHLASAE 1566
Score = 44.7 bits (104), Expect = 0.10, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+DK++ IAS + L +L G+ +TD+ + + NL+ NF ++D G+EHL
Sbjct: 1508 DDKFIQSIASPDYTYL--NLGGTRITDASIAAFESLQNLEMATLNF-TGLTDEGIEHLAS 1564
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIK 163
NLT L +T K F L L +L L GL+ L L L+ LN+
Sbjct: 1565 AENLTYLGLNHTR-LTDASAKVFLKLNQLEELTLSNTQFSDQGLLLLVNALPNLKRLNLL 1623
Query: 164 WCNCITDS 171
DS
Sbjct: 1624 ETKVTADS 1631
>gi|320165727|gb|EFW42626.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 553
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 175/375 (46%), Gaps = 6/375 (1%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
SL N IS GL+ LT+L F NN + + A AGL L L L+R
Sbjct: 60 SLQGNLLTSISANAFT---GLTALTTL-FLENNQLPSISANALAGLTALQYLSLQRNQLT 115
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
GL L LN+ + N L+GLT +++L + + +T L
Sbjct: 116 SISANTFTGLTALTGLNLDF-NQFASISADTLAGLTTMRTLSLGSNGITSISANAFTSLT 174
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
LT+L+L + + D+L+ L ++ L+L R QL+ F+ + +L L+L +NE+
Sbjct: 175 ALTVLDLSYNELPSISADALTGLTAMRTLSLQRNQLTSISANTFTGLTALTGLDLSYNEL 234
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS 324
L GLT L+ L+L++ I TGLT L ++ L++ + + S L GL+
Sbjct: 235 PSISANALTGLTALQYLSLNNNRITRISANTFTGLTALTTLYLNYNQLPNISANALTGLT 294
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
+L+SL+L IT A LT L L L +++ A L L+ L + +
Sbjct: 295 ALRSLSLTQNNITTIHANAFAGLTALASLVLVQNQLSSISADALTGLTALQYLSLNNNRI 354
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
T L++LT+L LS N L + ++GLT L L+++N++ITS L
Sbjct: 355 TRISANAFTGLTALTVLYLSYN-ELPSISANALAGLTALQYLSLNNNQITSIAAAAFAGL 413
Query: 445 KNLRSLTLESCKVTA 459
L L L++ ++T+
Sbjct: 414 TALTHLPLDNNQITS 428
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 110/374 (29%), Positives = 164/374 (43%), Gaps = 30/374 (8%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LDFN IS + L GL+ + +LS N IT+ AF L L LDL
Sbjct: 133 LDFNQFASISA---DTLAGLTTMRTLSLGSN-GITSISANAFTSLTALTVLDLSYNELPS 188
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
L GL + +L+++ N +T +GLT L L +S +++ L GL
Sbjct: 189 ISADALTGLTAMRTLSLQR-NQLTSISANTFTGLTALTGLDLSYNELPSISANALTGLTA 247
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L+L +T ++ + L +L L LN QL + + + +L+ L+L N IT
Sbjct: 248 LQYLSLNNNRITRISANTFTGLTALTTLYLNYNQLPNISANALTGLTALRSLSLTQNNIT 307
Query: 266 --------------DECLVH----------LKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
LV L GLT L+ L+L++ I TGLT
Sbjct: 308 TIHANAFAGLTALASLVLVQNQLSSISADALTGLTALQYLSLNNNRITRISANAFTGLTA 367
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L + LS+ + S LAGL++L+ L+L+ QIT AA LT LTHL L +IT
Sbjct: 368 LTVLYLSYNELPSISANALAGLTALQYLSLNNNQITSIAAAAFAGLTALTHLPLDNNQIT 427
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
A L+ L + +T L++LT L L+QN N+ + +GLT
Sbjct: 428 SISAEAFTGLSALQLLSLNSNQITSIAANAFTGLNALTSLYLNQN-NIAGISANAFTGLT 486
Query: 422 GLVSLNVSNSRITS 435
L L + ++ T+
Sbjct: 487 KLTQLYLDDNPFTT 500
>gi|325106627|ref|YP_004267695.1| hypothetical protein Plabr_0042 [Planctomyces brasiliensis DSM
5305]
gi|324966895|gb|ADY57673.1| leucine-rich repeat-containing protein [Planctomyces brasiliensis
DSM 5305]
Length = 526
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 139/281 (49%), Gaps = 5/281 (1%)
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++W D P NL+ L ++ +A + + L L + C + L
Sbjct: 34 VRWDQSPEDFPALP----ENLQELDLTNCPCGSKILAQPEFQETLLKLKCQNCDIDFDTL 89
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ + L SL L+L+ L D G EK SK+ L+ + +TD L ++K L+S+
Sbjct: 90 ELIGQLRSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSI 149
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
+L+ + + GL +L GL +L +NL + ++ +L+ L L L+ L+L T GL
Sbjct: 150 DLNQNKLSEAGLCHLEGLVSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHHGL 209
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
+ LT L L L G RI D G L F L SL++ G ++D +K + L L L
Sbjct: 210 SFLTYFRRLRSLKLGGNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRL 269
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ ++D+ L+L++ ++ L++L+V + +T +G++ L+
Sbjct: 270 YVP-GTAVSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLE 309
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 101/399 (25%), Positives = 181/399 (45%), Gaps = 17/399 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + ++ + VTD+GL ++K L+S+D N ++S+ GL HL GL +L ++
Sbjct: 117 SKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQN-KLSEAGLCHLEGLVSLREVNL 175
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
RR+ ++ +K L+ L KLDL H GL L +L SL + N I D +
Sbjct: 176 RRS-SVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLTYFRRLRSLKLG-GNRIEDDGL 233
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
PL L+SL +S + ++D + L L +L L + G V+ L L+++ +L L
Sbjct: 234 FPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLYVPGTAVSDEGLQLLTSVSTLIAL 293
Query: 234 NLNRCQLSDDGCEKFS------KIGSLKVLNLGFNEITDECLVHLKG--LTNLESLNLDS 285
++ + ++ G ++ KI S + I ++ + G LT S ++ +
Sbjct: 294 DVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSSHVIRSRDVLQMHGCHLTLSRSGDVIA 353
Query: 286 CGIGDEG------LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
C G++ L ++L+S+ L+ + L+ L +S L+SL L
Sbjct: 354 CQAGEDASPPIHWFSALESFSSLKSLELNRLALDGEQLQFLKNMSQLQSLALKQCTFPPE 413
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
L+ L SL L LDL ++D L +L +L + G+T G++ + L
Sbjct: 414 ALSVLKSLNRLAWLDLRDTPVSDESLQALGELPSLSNLCLSRTGVTATGLESLSSAPLLR 473
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
L + + + D + + L L++ + IT G
Sbjct: 474 DLVIKECGQIGDPAVLALEKFKNLKHLDIRGTNITEQGF 512
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 142/313 (45%), Gaps = 13/313 (4%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ D M+ LS L L++ I+ ++VTD+G+ Y+K + L ++L ++ A L L L
Sbjct: 108 LDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQNKLSEAGLCHLEGL 167
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
SL +NL R ++ + ++ L+ L+L T L L L SL L
Sbjct: 168 VSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLTYFRRLRSLKLGGNR 227
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
I D+GL L LES++LS T ISD +++ LA L LK L + ++D GL LTS+
Sbjct: 228 IEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLYVPGTAVSDEGLQLLTSV 287
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS--- 404
+ L LD+ +T SG L ++ L + V +D+ + +L+
Sbjct: 288 STLIALDVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSSHVIRSRDVLQMHGCHLTLSR 347
Query: 405 ----------QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
++ + + + L SL ++ + L+ LK + L+SL L+
Sbjct: 348 SGDVIACQAGEDASPPIHWFSALESFSSLKSLELNRLALDGEQLQFLKNMSQLQSLALKQ 407
Query: 455 CKVTANDIKRLQS 467
C + L+S
Sbjct: 408 CTFPPEALSVLKS 420
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 128/283 (45%), Gaps = 1/283 (0%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L +S + S + + L L+L CP + L +L L C + D
Sbjct: 28 ALDLSAVRWDQSPEDFPALPENLQELDLTNCPCGSKILAQPEFQETLLKLKCQNCDIDFD 87
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
E ++ SL+ L+L + D + L L L + + + D GL + L+
Sbjct: 88 TLELIGQLRSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLK 147
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
SI+L+ +S+ L L GL SL+ +NL + L L L L LDL T
Sbjct: 148 SIDLNQNKLSEAGLCHLEGLVSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHH 207
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G ++L F+ LRSL++ G + D G+ + L L+LS ++D+ ++ ++ L L
Sbjct: 208 GLSFLTYFRRLRSLKLGGNRIEDDGLFPLLQFPRLESLDLS-GTPISDQAMKTLAQLPRL 266
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
L V + ++ GL+ L + L +L + VT + +++L+
Sbjct: 267 KRLYVPGTAVSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLE 309
>gi|87307769|ref|ZP_01089912.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
gi|87289383|gb|EAQ81274.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
Length = 1283
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 115/457 (25%), Positives = 194/457 (42%), Gaps = 34/457 (7%)
Query: 9 QIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD 68
++ N ++++ +T AF DC LQ + L P V D+W+ + + + + S +
Sbjct: 855 KVTNLMLWATPITREDFLAFADCKLQGVLLSYTP-VKDEWLTHL-THPEAFTDLGFSFTQ 912
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ D GL ++ + +L +I+D GL + L S+ R+ ++T G+ F
Sbjct: 913 IGDEGLAAFQNSKKIVNLHLEHT-KITDVGLAYFHDCRELKSIRLRQT-SVTDAGVLPFK 970
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L +L L + L+ L + I W D D K S
Sbjct: 971 HCSKLEELSLATTNVTAAAVEELRA--ALPNCKITW-----DGDAKTES----------P 1013
Query: 189 CSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 246
K +D+ Y+ + + LN G + +A + A L ++N N C+ +DDG
Sbjct: 1014 EEKNSDNLAAKYVLSIGGIVRLNGGGTDIHSAT-ELPPAPFRLTHVNFNLCKKATDDGLA 1072
Query: 247 KFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
F+ + L + F +T L + K +L+ LN + GL L NLE I
Sbjct: 1073 VFANCKDIVSLTMRFTPNVTGRGLAYFKNCKDLKELNCNYSPYVSAGLPLLANCKNLEKI 1132
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
+L + LR +A L L +NL A + D L+ T+ LT+L+ +I D G
Sbjct: 1133 SLMGVKFTREELRPIAELP-LTFVNLGATPVQDEWLSDFTNAESLTYLNFASTKIGDKGL 1191
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
A +N L+ L + +TD G+ + D L +L L QN + D L L
Sbjct: 1192 AAFQNCNALQQLSLQDTNITDEGLAYFYDCRDLEILQL-QNTKVRDFGLLRFKSCQKLKQ 1250
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
+ +S +R+T+AG+ LK +L C V +D+
Sbjct: 1251 VEISKTRVTAAGVDELK-------KSLPYCTVVWDDV 1280
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 2/176 (1%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+S DG + F + +LKVL L + L HL + +L L + I E +
Sbjct: 818 ISADGLKHFRRCRNLKVLALPHCDNIGSGLSHLSECDKVTNLMLWATPITREDFLAFAD- 876
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
L+ + LS+T + D L L + L QI D GLAA + + +L L +
Sbjct: 877 CKLQGVLLSYTPVKDEWLTHLTHPEAFTDLGFSFTQIGDEGLAAFQNSKKIVNLHLEHTK 936
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
ITD G AY + + L+S+ + +TDAGV K S L L+L+ N+T +E
Sbjct: 937 ITDVGLAYFHDCRELKSIRLRQTSVTDAGVLPFKHCSKLEELSLA-TTNVTAAAVE 991
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 97/247 (39%), Gaps = 30/247 (12%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDS 285
L S+F+ C +++ F+ ++ L L I+ + L H + NL+ L L
Sbjct: 782 LKSVFFNQAIEC--TNEEFAVFADCQDIEALTLWAVPTISADGLKHFRRCRNLKVLALPH 839
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
C GL +L+ + ++ L T I+ A L+ + L + D L LT
Sbjct: 840 CDNIGSGLSHLSECDKVTNLMLWATPITREDFLAFAD-CKLQGVLLSYTPVKDEWLTHLT 898
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
T L +I D G A +N K + +L + +TD G+ + D L + L Q
Sbjct: 899 HPEAFTDLGFSFTQIGDEGLAAFQNSKKIVNLHLEHTKITDVGLAYFHDCRELKSIRLRQ 958
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ +T AG+ K L L+L + VTA ++ L
Sbjct: 959 -------------------------TSVTDAGVLPFKHCSKLEELSLATTNVTAAAVEEL 993
Query: 466 QSRDLPN 472
++ LPN
Sbjct: 994 RAA-LPN 999
>gi|290980851|ref|XP_002673145.1| predicted protein [Naegleria gruberi]
gi|284086726|gb|EFC40401.1| predicted protein [Naegleria gruberi]
Length = 468
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 154/332 (46%), Gaps = 12/332 (3%)
Query: 53 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE---HLRGLSNLT 109
S+ L ++ ++ +++ G L++ NL L+ I +D G+E ++ L LT
Sbjct: 132 VSEMKQLTNLYVNANNIGTEGAKFLRELKNLTYLN----ISENDIGVEGAKYISELKQLT 187
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
L NN I +G K + L L LD+E G + L +L+ LNI + +
Sbjct: 188 DLDISYNN-IGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISYS-SLG 245
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D + +S + L L IS S + G Y+ +++LT L +E + +S +
Sbjct: 246 DKGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTMKE 305
Query: 230 L--FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L Y+ NR +SD+G + S++ +L VL +G N I +E HL L NL S+ +
Sbjct: 306 LTKLYMQGNRL-ISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTE 364
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
IGDEG L+ L L + + + GI + ++ L L L + I + G ++ L
Sbjct: 365 IGDEGAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKYISEL 424
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
LT LD+ I GA YL K L LEI
Sbjct: 425 KQLTDLDISYNNIGTEGADYLSQMKQLTHLEI 456
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 155/338 (45%), Gaps = 4/338 (1%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
G H+ + L +L N I G + LR L NLT L+ N+ I +G K + L
Sbjct: 127 EGAKHVSEMKQLTNLYVN-ANNIGTEGAKFLRELKNLTYLNISEND-IGVEGAKYISELK 184
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L LD+ G + L +L +L+I+ N T+ K +S L L+ L IS S
Sbjct: 185 QLTDLDISYNNIGTEGAKYISDLKQLTTLDIESNNIGTEG-AKYISELNQLQVLNISYSS 243
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+ D G Y+ +++LT L + + + +S + L L + + D+G + S +
Sbjct: 244 LGDKGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTM 303
Query: 252 GSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
L L + N I+DE +L L NL L + IG+EG +L+ L NL SI +S+T
Sbjct: 304 KELTKLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYT 363
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I D + L+ L+ L L + I G +++L LT L + I + GA Y+
Sbjct: 364 EIGDEGAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKYISE 423
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
K L L+I + G ++ + LT L + N +
Sbjct: 424 LKQLTDLDISYNNIGTEGADYLSQMKQLTHLEIETNSD 461
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 142/299 (47%), Gaps = 13/299 (4%)
Query: 170 DSDMKPLSG--LTNLKSLQISCSKVTDSG----IAYLKGLQKLTLL-NLEGCP----VTA 218
++ MKP G L N+ +L+ + TD+ A +K + L + N+EG +
Sbjct: 69 ENTMKPPQGQFLANISTLEFE--RRTDAFDFKVFALMKHVTSLEIDDNIEGTTNENGIGV 126
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+S + L L +N + +G + ++ +L LN+ N+I E ++ L L
Sbjct: 127 EGAKHVSEMKQLTNLYVNANNIGTEGAKFLRELKNLTYLNISENDIGVEGAKYISELKQL 186
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L++ IG EG ++ L L ++++ I + ++ L+ L+ LN+ + D
Sbjct: 187 TDLDISYNNIGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISYSSLGD 246
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
G ++ + LTHL + + I GA Y+ K L +L I + D G KHI + L
Sbjct: 247 KGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTMKEL 306
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
T L + N ++D+ + +S L L L + ++RI + G +HL LKNL S+ + ++
Sbjct: 307 TKLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTEI 365
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 125/283 (44%), Gaps = 28/283 (9%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++D+ +++ G ++ + + LQ L+ ++ + D G +++ + LT L + ++
Sbjct: 210 LTTLDIESNNIGTEGAKYISELNQLQVLNISYS-SLGDKGAQYISEMKQLTHL-YISDSL 267
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I ++G K + + L L +E N I D K +S
Sbjct: 268 IRSEGAKYISEMKQLTNLFIEN-------------------------NDIDDEGAKHIST 302
Query: 179 LTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ L L + ++ ++D G YL L+ LT+L + + LS L +L + ++
Sbjct: 303 MKELTKLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSY 362
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++ D+G + S++ L +L +G+N I E H+ L L L + IG+EG ++
Sbjct: 363 TEIGDEGAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKYIS 422
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L L +++S+ I L+ + L L ++ + G
Sbjct: 423 ELKQLTDLDISYNNIGTEGADYLSQMKQLTHLEIETNSDAEEG 465
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 17/252 (6%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
I ++G+ +S +++S S + D G ++ + L L + + I G +++
Sbjct: 220 IGTEGAKYISELNQLQVLNISYSSLGDKGAQYISEMKQLTHLYISDSL-IRSEGAKYISE 278
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNI 162
+ LT+L F NN I +G K + + L KL ++ R G K L +L++L +
Sbjct: 279 MKQLTNL-FIENNDIDDEGAKHISTMKELTKLYMQGNRLISDEGA----KYLSELKNLTV 333
Query: 163 KWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ N I + K LS L NL S+ +S +++ D G YL L KLT+L + + A
Sbjct: 334 LFIGDNRIGNEGAKHLSELKNLTSIYVSYTEIGDEGAKYLSELNKLTILQIGYNGIGAEG 393
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+S L L L + + ++G + S++ L L++ +N I E +L + L
Sbjct: 394 AKHISNLKELTMLKIQYNNIGNEGAKYISELKQLTDLDISYNNIGTEGADYLSQMKQLTH 453
Query: 281 LNLDSCGIGDEG 292
L +++ +EG
Sbjct: 454 LEIETNSDAEEG 465
>gi|326513166|dbj|BAK06823.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 627
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 118/477 (24%), Positives = 211/477 (44%), Gaps = 53/477 (11%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
LE FR ++Q++ L V+ +W+ + S L + L+ V S + L S L
Sbjct: 90 LEVFRH-SVQEIDLSGDIAVDAEWLAYLGS-FRYLGVLKLADCKKVDHSAIWPLSGMSML 147
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
+ LD + C +I+D G++H+ + +L L +T G+ + L L+ LDL
Sbjct: 148 KELDLSRCSKITDAGIKHIVSIDSLEKLHL-SETGLTDNGVMLISALKGLILLDLGGIHM 206
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L +L+ L +LE L++ W + ITD L T L+ L +S + VT L L
Sbjct: 207 TDKALRSLQVLTQLEHLDV-WGSEITDEGASILEAFTGLRFLNVSWTHVTR-----LPHL 260
Query: 204 QKLTLLNLEGCPVTAAC---------LDSLSALGSLF----------------YLNLNRC 238
+ LN+ C + + C L +A + F +L+++ C
Sbjct: 261 PNMKYLNMSNCTIYSICGGDSEVHIPLQKFTASAASFGDIDEVFSSIVASSFSFLDMSGC 320
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLT 297
LS+ K+ SL+ L++ N +TD+ + ++ + L L+L + GI + L L
Sbjct: 321 SLSN--LYGLQKMKSLEHLDISLNRVTDDAVEYVANIGMKLRYLSLKNTGITSQALCILA 378
Query: 298 G-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
G + NL S++L++T I D +L ++ + SL+ ++L + T++ G T ++
Sbjct: 379 GTVPNLASLSLAYTKIDDSALVYISMMPSLRVIDL-----------SHTTIKGFTRVEAN 427
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I L + L SL + L+D + + +L L L + L+D L
Sbjct: 428 SEKIP--SLPLLEHLIYLESLNLEDAPLSDEVIPPMTSFRALKYLYLKSDF-LSDPGLHA 484
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+S + L+ L S ++++GL P L L L C + D R P++
Sbjct: 485 LSSASNLIHLGFCGSVLSNSGLLEFVPPAQLHVLDLSGCWILTGDAISTFRRHHPSI 541
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 98/386 (25%), Positives = 173/386 (44%), Gaps = 53/386 (13%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ A+ + L L L C ++ H + L G+ L+ L++ C+ ITD+ +K +
Sbjct: 107 AVDAEWLAYLGSFRYLGVLKLADCKKVDHSAIWPLSGMSMLKELDLSRCSKITDAGIKHI 166
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ +L+ L +S + +TD+G+ + L+ L LL+L G +T L SL L L +L++
Sbjct: 167 VSIDSLEKLHLSETGLTDNGVMLISALKGLILLDLGGIHMTDKALRSLQVLTQLEHLDVW 226
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI-----GD- 290
+++D+G L+ LN+ + +T L L N++ LN+ +C I GD
Sbjct: 227 GSEITDEGASILEAFTGLRFLNVSWTHVT-----RLPHLPNMKYLNMSNCTIYSICGGDS 281
Query: 291 EGLVNLTGLT--------------NLESINLSFTGISDGSLRKLAGLSSLKS---LNLDA 333
E + L T ++ + + SF +S SL L GL +KS L++
Sbjct: 282 EVHIPLQKFTASAASFGDIDEVFSSIVASSFSFLDMSGCSLSNLYGLQKMKSLEHLDISL 341
Query: 334 RQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLR-NFKNLRSLEICGGGLTDAGVKH 391
++TD + + ++ L +L L IT L NL SL + + D+ + +
Sbjct: 342 NRVTDDAVEYVANIGMKLRYLSLKNTGITSQALCILAGTVPNLASLSLAYTKIDDSALVY 401
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
I + SL +++LS + G + ++ +I S L L+ L L SL
Sbjct: 402 ISMMPSLRVIDLSHTT------------IKGFTRVEANSEKIPSLPL--LEHLIYLESLN 447
Query: 452 LESCKVTANDIKRLQSRDLPNLVSFR 477
LE ++ I P + SFR
Sbjct: 448 LEDAPLSDEVI--------PPMTSFR 465
>gi|149176763|ref|ZP_01855374.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148844404|gb|EDL58756.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 416
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 135/275 (49%), Gaps = 6/275 (2%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+TD G YLK QKL L + G +T L+ L+ + SL L L+ ++ D +
Sbjct: 129 ITDQGATYLKQ-QKLGHLGITGGSMTDNGLNELAEMNSLRTLGLHHLAITGDQLPP-NTF 186
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
LK+L+L T++ L +L +L L+L + + GL L+ NL ++ L
Sbjct: 187 PKLKMLDLSDTRFTNQGLKNLSPNASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLK 246
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
I + KLA + L L+L + D L+ L +T L L ++ITD G +L
Sbjct: 247 IKAAAFAKLANMKRLYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATM 306
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
KNL +L + G +TD+G+K + L L L+LS + ++D+ L +S + L LN+SN+
Sbjct: 307 KNLETLFLPGAKITDSGLKVLSQLPKLDYLDLS-DTQISDEGLRQLSKIPALRMLNLSNT 365
Query: 432 RITSAG---LRHLKPLKNLRSLTLESCKVTANDIK 463
R+T L L+++ + VT DI+
Sbjct: 366 RVTDQAKQILLQFPALESIEAFNTSISPVTIEDIR 400
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 122/261 (46%), Gaps = 2/261 (0%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L L I+ +TD+G+ L + L L L +T L + L L+L+ + +
Sbjct: 142 LGHLGITGGSMTDNGLNELAEMNSLRTLGLHHLAITGDQLPP-NTFPKLKMLDLSDTRFT 200
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
+ G + S SL L+L ++ L L NL +L L + I L +
Sbjct: 201 NQGLKNLSPNASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKR 260
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L ++L T ++D +L+ L + L LD QITD GL L ++ L L L GA+IT
Sbjct: 261 LYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKIT 320
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
DSG L L L++ ++D G++ + + +L +LNLS N +TD+ +++
Sbjct: 321 DSGLKVLSQLPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLS-NTRVTDQAKQILLQFP 379
Query: 422 GLVSLNVSNSRITSAGLRHLK 442
L S+ N+ I+ + ++
Sbjct: 380 ALESIEAFNTSISPVTIEDIR 400
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 116/255 (45%), Gaps = 4/255 (1%)
Query: 144 IHGGLVNLKGLMKLESLN----IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
I GG + GL +L +N + + D P + LK L +S ++ T+ G+
Sbjct: 147 ITGGSMTDNGLNELAEMNSLRTLGLHHLAITGDQLPPNTFPKLKMLDLSDTRFTNQGLKN 206
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L L+L V++A L LS +L L L ++ K + + L L+L
Sbjct: 207 LSPNASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKRLYQLDL 266
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
+ D + L L + L LD I D+GL +L + NLE++ L I+D L+
Sbjct: 267 QGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKITDSGLKV 326
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L+ L L L+L QI+D GL L+ + L L+L R+TD L F L S+E
Sbjct: 327 LSQLPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLSNTRVTDQAKQILLQFPALESIEA 386
Query: 380 CGGGLTDAGVKHIKD 394
++ ++ I+D
Sbjct: 387 FNTSISPVTIEDIRD 401
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 145/315 (46%), Gaps = 42/315 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLS------VDLSGSDVTDSGLIHLKDCSNLQS 85
++Q+L LG N +I QG++ L + ++G +TD+GL L + ++L++
Sbjct: 114 SIQNLTLG-----NPHNPTIITDQGATYLKQQKLGHLGITGGSMTDNGLNELAEMNSLRT 168
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L GL HL AIT + L LDL +
Sbjct: 169 L-----------GLHHL---------------AITGDQLPP-NTFPKLKMLDLSDTRFTN 201
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
GL NL L L++ N ++ + ++ LS NL++L++ K+ + A L +++
Sbjct: 202 QGLKNLSPNASLVYLHLSNTN-VSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKR 260
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L+L+G V A LS L + L L++ Q++D G + + +L+ L L +IT
Sbjct: 261 LYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKIT 320
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS---LRKLAG 322
D L L L L+ L+L I DEGL L+ + L +NLS T ++D + L +
Sbjct: 321 DSGLKVLSQLPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLSNTRVTDQAKQILLQFPA 380
Query: 323 LSSLKSLNLDARQIT 337
L S+++ N +T
Sbjct: 381 LESIEAFNTSISPVT 395
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 108/239 (45%), Gaps = 9/239 (3%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNE----ITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
Q+ DD + + S++ L LG ITD+ +LK L L + + D GL
Sbjct: 100 QVDDDFLLELGNLHSIQNLTLGNPHNPTIITDQGATYLKQ-QKLGHLGITGGSMTDNGLN 158
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L + +L ++ L I+ L LK L+L + T+ GL L+ L +L
Sbjct: 159 ELAEMNSLRTLGLHHLAITGDQLPP-NTFPKLKMLDLSDTRFTNQGLKNLSPNASLVYLH 217
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L ++ +G L F NLR+L + + A + ++ L L+L Q + D
Sbjct: 218 LSNTNVSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKRLYQLDL-QGTAVNDAVA 276
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+S L + L + S+IT GLRHL +KNL +L L K+T + +K L LP L
Sbjct: 277 LQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKITDSGLKVLSQ--LPKL 333
>gi|168701212|ref|ZP_02733489.1| hypothetical protein GobsU_16936 [Gemmata obscuriglobus UQM 2246]
Length = 410
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 135/299 (45%), Gaps = 15/299 (5%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD + L+G NL L+++ + +TD+G+ +L L L+ L+L G A S +
Sbjct: 114 VTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGATSAGSYRGI 173
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+D G + I L L+LG E+TD L + L L L+
Sbjct: 174 -------------TDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGTK 220
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
I D L NL LT L I+L+FT ++D L+ LA L + L + +TD G+ L +L
Sbjct: 221 ITDAALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAAL 280
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKN-LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT LDL + D G L N L S+ + + D G K + LT LNL
Sbjct: 281 PELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLTRLNLGYT 340
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ D + ++ L L + +R+T G+R L + L + L +VT I+ L
Sbjct: 341 -RVGDDGVSALAAAPNLTGLTLVATRVTDDGVRSLFACRKLAYVELRETEVTDGAIREL 398
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 142/288 (49%), Gaps = 14/288 (4%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ---------- 93
V D+ + +A Q +L+ + L+G+ +TD+GL HL L +L + +
Sbjct: 114 VTDQKLAELAGQ-PNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGATSAGSYRG 172
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I+D GL LR + LT LS +T G + A + L L LE L NL
Sbjct: 173 ITDAGLNELRAIKGLTDLSL-GGIEVTDAGARTLATMPQLRVLGLEGTKITDAALENLAP 231
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L +L +++ + +TD+ +K L+ L +++S + VTD+G+ L L +LT L+L
Sbjct: 232 LTELTEIDLTFTK-VTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAALPELTDLDLSY 290
Query: 214 CPVTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ +L+A + L ++L + ++ D+G + + L LNLG+ + D+ + L
Sbjct: 291 TKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLTRLNLGYTRVGDDGVSAL 350
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
NL L L + + D+G+ +L L + L T ++DG++R+L
Sbjct: 351 AAAPNLTGLTLVATRVTDDGVRSLFACRKLAYVELRETEVTDGAIREL 398
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 121/270 (44%), Gaps = 35/270 (12%)
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC---- 286
F L+L ++D + + +L VL L ITD L HL L L +L+L
Sbjct: 105 FGLSLAHHDVTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGA 164
Query: 287 -------GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
GI D GL L + L ++L ++D R LA + L+ L L+ +ITD
Sbjct: 165 TSAGSYRGITDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGTKITDA 224
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
L L LT LT +DL ++TD+G +L FK L + + +TDAGV+ + L LT
Sbjct: 225 ALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAALPELT 284
Query: 400 LLNLS------------------------QNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L+LS + + D+ + ++ GL LN+ +R+
Sbjct: 285 DLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLTRLNLGYTRVGD 344
Query: 436 AGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
G+ L NL LTL + +VT + ++ L
Sbjct: 345 DGVSALAAAPNLTGLTLVATRVTDDGVRSL 374
>gi|320164611|gb|EFW41510.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 853
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 113/391 (28%), Positives = 171/391 (43%), Gaps = 27/391 (6%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GL+ LT LS N IT+ + AFAGL L +LDL
Sbjct: 69 QITGIAPSAFTGLTALTVLSLSYNQ-ITSIPVSAFAGLDALTRLDLSSNLITSISASAFP 127
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS------------------------ 188
L L LN++ N IT +GLT L+ L +S
Sbjct: 128 SLTALTELNLQG-NLITSIPASLFTGLTALRWLPLSNNQITSIAANAFNGLSAVTLIYLQ 186
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++TD A GL LT L L G +T+ + + L SL L+L ++++ F
Sbjct: 187 TNQITDLSPATFTGLAALTELYLMGNQITSIHASTFAGLTSLENLDLQDNKITEVPASAF 246
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
+ + +L L L N+IT+ GLT LE LNL I + LT LE++NL
Sbjct: 247 TDLSALTGLTLQDNQITEIPASAFAGLTVLEILNLQGNQITNIPETVFADLTALETLNLQ 306
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
I+ A L++L+SL+L IT + T L+ L L L +ITD A+
Sbjct: 307 DNQITSIPASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSASVF 366
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+ L LE+ +T+ L++LT L+LS +C +T +++ + LT L L +
Sbjct: 367 ASLTALAVLELQSNQITEISANAFTGLTALTKLDLS-SCQITSFSVDAFTSLTALRDLYL 425
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
++ITS L L L L ++T+
Sbjct: 426 HFNQITSIPASAFTGLTALYVLILAYNQITS 456
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 145/320 (45%), Gaps = 7/320 (2%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E T I G+ +++L S N IT +GLT L L +S +++T ++
Sbjct: 47 ETLTTIPTGIPVDTTMLRLSS------NQITGIAPSAFTGLTALTVLSLSYNQITSIPVS 100
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
GL LT L+L +T+ + +L +L LNL ++ F+ + +L+ L
Sbjct: 101 AFAGLDALTRLDLSSNLITSISASAFPSLTALTELNLQGNLITSIPASLFTGLTALRWLP 160
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
L N+IT GL+ + + L + I D TGL L + L I+
Sbjct: 161 LSNNQITSIAANAFNGLSAVTLIYLQTNQITDLSPATFTGLAALTELYLMGNQITSIHAS 220
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
AGL+SL++L+L +IT+ +A T L+ LT L L +IT+ A+ L L
Sbjct: 221 TFAGLTSLENLDLQDNKITEVPASAFTDLSALTGLTLQDNQITEIPASAFAGLTVLEILN 280
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
+ G +T+ DL++L LNL N +T + LT L SL++ ++ ITS
Sbjct: 281 LQGNQITNIPETVFADLTALETLNLQDN-QITSIPASAFADLTALRSLDLQDNNITSIPA 339
Query: 439 RHLKPLKNLRSLTLESCKVT 458
L L L L + K+T
Sbjct: 340 SVFTGLSALNELKLHTNKIT 359
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 163/372 (43%), Gaps = 7/372 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
QI+D GL+ LT L + N IT+ FAGL +L LDL+ + T +
Sbjct: 189 QITDLSPATFTGLAALTEL-YLMGNQITSIHASTFAGLTSLENLDLQDNKITEVPASA-- 245
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L L L ++ N IT+ +GLT L+ L + +++T+ L L LN
Sbjct: 246 FTDLSALTGLTLQD-NQITEIPASAFAGLTVLEILNLQGNQITNIPETVFADLTALETLN 304
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L+ +T+ + + L +L L+L ++ F+ + +L L L N+ITD
Sbjct: 305 LQDNQITSIPASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSAS 364
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
LT L L L S I + TGLT L ++LS I+ S+ L++L+ L
Sbjct: 365 VFASLTALAVLELQSNQITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDLY 424
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L QIT +A T LT L L L +IT L +L + +T
Sbjct: 425 LHFNQITSIPASAFTGLTALYVLILAYNQITSLPTNTFTGLTALNTLTLSFNPITSISAN 484
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
DL+SL L L+ N +T + +GL GL L +S++ T+ + L N SL
Sbjct: 485 TFTDLTSLFFLILNNN-QITSISANAFAGLPGLKYLVLSDNPFTTLPPGLFQGLPNGLSL 543
Query: 451 TLESCKVTANDI 462
+L + N+
Sbjct: 544 SLSGQYLRPNNF 555
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 127/275 (46%), Gaps = 1/275 (0%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L++S +++T + GL LT+L+L +T+ + + + L +L L+L+ ++
Sbjct: 63 LRLSSNQITGIAPSAFTGLTALTVLSLSYNQITSIPVSAFAGLDALTRLDLSSNLITSIS 122
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
F + +L LNL N IT GLT L L L + I GL+ +
Sbjct: 123 ASAFPSLTALTELNLQGNLITSIPASLFTGLTALRWLPLSNNQITSIAANAFNGLSAVTL 182
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
I L I+D S GL++L L L QIT + LT L +LDL +IT+
Sbjct: 183 IYLQTNQITDLSPATFTGLAALTELYLMGNQITSIHASTFAGLTSLENLDLQDNKITEVP 242
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
A+ + L L + +T+ L+ L +LNL N +T+ + + LT L
Sbjct: 243 ASAFTDLSALTGLTLQDNQITEIPASAFAGLTVLEILNLQGN-QITNIPETVFADLTALE 301
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
+LN+ +++ITS L LRSL L+ +T+
Sbjct: 302 TLNLQDNQITSIPASAFADLTALRSLDLQDNNITS 336
>gi|348503268|ref|XP_003439187.1| PREDICTED: hypothetical protein LOC100705990 [Oreochromis
niloticus]
Length = 894
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 127/446 (28%), Positives = 207/446 (46%), Gaps = 50/446 (11%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDL 64
++++ + N + + R L +LE F C +Q L YP ++ + + + ++L + L
Sbjct: 474 ELAELLLNHMSHERLLHPRTLELFFGCPIQKFVLNSYPYSTNELLRQLRA-FTALKHLSL 532
Query: 65 SGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S +TDSGL L LQ L+ C +++D L+H+ GL NL LS + +T G
Sbjct: 533 VNSPLITDSGLCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLCFLSLDQTK-VTDAG 591
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNL 182
M + L ++ + SLN +T++ + L + + L
Sbjct: 592 MVLY--------------------LQSVPSCLSQLSLN---QTAVTETTLAVLPTSVPQL 628
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
+ L I +KV D + L + L LNL+G VT A L+ L+ +L L L ++
Sbjct: 629 RLLSIKQTKVKD--LTALAAMSSLQTLNLDGTGVTEASLEHLATHPALTSLTLVGIPVA- 685
Query: 243 DGCEKFSKIGSLKVLNL---GFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTG 298
DG I LK+ + G + +TD L L LT L L+L D I D+G+ +L+
Sbjct: 686 DGSHALQIISGLKLTRITLPGRHSVTDSGLSFLSRLTLLSELDLTDYTQITDQGVSHLST 745
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
LT L+ ++LS T ++D L L + L+ L LD +T G+A L +T L HL + G
Sbjct: 746 LTRLKKLSLSNTQVTDAGLPSLRCMQELQELCLDRTAVTSRGVADL--ITCLPHLQVLGL 803
Query: 359 RITDSGAAYLRNF----KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ-NCNLTDKT 413
T G +R L L + +TD G+K++K + L+Q N + T +
Sbjct: 804 ASTQVGDNVVRKGLIRCSQLVKLNLSRTRITDHGLKYLKQ------MRLAQVNLDGTGVS 857
Query: 414 LELISGL---TGLVSLNVSNSRITSA 436
L I+ L T + S+ SN+R S
Sbjct: 858 LMGIASLLSCTNINSIRASNTRTLSP 883
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 175/333 (52%), Gaps = 19/333 (5%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++AF L +L ++ T GL L L+KL+ LN+ C+ +TDS ++ ++GL NL
Sbjct: 521 LRAFTALKHLSLVNSPLIT--DSGLCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLC 578
Query: 184 SLQISCSKVTDSGIA-YLKGLQK-LTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQL 240
L + +KVTD+G+ YL+ + L+ L+L VT L L +++ L L++ + ++
Sbjct: 579 FLSLDQTKVTDAGMVLYLQSVPSCLSQLSLNQTAVTETTLAVLPTSVPQLRLLSIKQTKV 638
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
D + + SL+ LNL +T+ L HL L SL L + D G L ++
Sbjct: 639 KD--LTALAAMSSLQTLNLDGTGVTEASLEHLATHPALTSLTLVGIPVAD-GSHALQIIS 695
Query: 301 NLESINLSFTG---ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLF 356
L+ ++ G ++D L L+ L+ L L+L D QITD G++ L++LT L L L
Sbjct: 696 GLKLTRITLPGRHSVTDSGLSFLSRLTLLSELDLTDYTQITDQGVSHLSTLTRLKKLSLS 755
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLE 415
++TD+G LR + L+ L + +T GV I L L +L L+ + + D +
Sbjct: 756 NTQVTDAGLPSLRCMQELQELCLDRTAVTSRGVADLITCLPHLQVLGLA-STQVGDNVVR 814
Query: 416 LISGL---TGLVSLNVSNSRITSAGLRHLKPLK 445
GL + LV LN+S +RIT GL++LK ++
Sbjct: 815 --KGLIRCSQLVKLNLSRTRITDHGLKYLKQMR 845
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 152/312 (48%), Gaps = 46/312 (14%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDS-----------LSALGSLFYLNL-NRCQLSDDG 244
+++ + L TL GCP+ L+S L A +L +L+L N ++D G
Sbjct: 483 MSHERLLHPRTLELFFGCPIQKFVLNSYPYSTNELLRQLRAFTALKHLSLVNSPLITDSG 542
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV--------- 294
S + L+ LNL +++TD CL H+ GL NL L+LD + D G+V
Sbjct: 543 LCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLCFLSLDQTKVTDAGMVLYLQSVPSC 602
Query: 295 ------NLTGLT------------NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
N T +T L +++ T + D L LA +SSL++LNLD +
Sbjct: 603 LSQLSLNQTAVTETTLAVLPTSVPQLRLLSIKQTKVKD--LTALAAMSSLQTLNLDGTGV 660
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIK 393
T+ L L + LT L L G + D G+ L+ L+ I G +TD+G+ +
Sbjct: 661 TEASLEHLATHPALTSLTLVGIPVAD-GSHALQIISGLKLTRITLPGRHSVTDSGLSFLS 719
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
L+ L+ L+L+ +TD+ + +S LT L L++SN+++T AGL L+ ++ L+ L L+
Sbjct: 720 RLTLLSELDLTDYTQITDQGVSHLSTLTRLKKLSLSNTQVTDAGLPSLRCMQELQELCLD 779
Query: 454 SCKVTANDIKRL 465
VT+ + L
Sbjct: 780 RTAVTSRGVADL 791
>gi|344170515|emb|CCA82933.1| leucine-rich-repeat type III effector protein (GALA5) [blood
disease bacterium R229]
Length = 533
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 172/371 (46%), Gaps = 5/371 (1%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L LD + C I+ G+ HL L L L+ R + I +G + A L LD+
Sbjct: 139 ASLTELDLSRCRGPITAAGIAHLSHLP-LVRLNVR-DQRIGVEGARLLANHPTLTSLDVS 196
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L G +L +L++ N I K L+ L SL IS + + D G
Sbjct: 197 NGRIGPEGARALAGNTRLTTLSVS-HNRIGAEGAKALAASETLTSLDISENGIGDEGACA 255
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L KLT LN+ + +L+A +L L++ + D+G + L LN+
Sbjct: 256 LATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNV 315
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
+ + + L L SL +DS IGD G L T+L ++++ GIS +
Sbjct: 316 ERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQA 375
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
LA ++L +LNL I D G A ++ T L L + ++D+GA L K L +L+
Sbjct: 376 LAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLAASKTLTTLDA 435
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+ DAG + + +LT L++ N + + ++ TGL SL++ N+R+T AG+R
Sbjct: 436 GDNTIRDAGARALAANRTLTTLDVRSN-EIENAGARALAANTGLASLDLRNNRVTEAGVR 494
Query: 440 HLKPLKNLRSL 450
L + L SL
Sbjct: 495 ALLANRTLSSL 505
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 198/416 (47%), Gaps = 23/416 (5%)
Query: 72 SGLIHLKDCSNLQSLD-FNFCIQISDGGLEHLRGL-SNLTSLSFRR-NNAITAQGMKAFA 128
+GL +K N +L+ +D LRGL ++LT L R ITA G+ +
Sbjct: 106 AGLAGVKRAGNYPALEKLTLIGPFTD---NDLRGLPASLTELDLSRCRGPITAAGIAHLS 162
Query: 129 GLINLVKLDLERCTRI--HGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L LV+L++ R RI G L N L L+ N + I + L+G T L +
Sbjct: 163 HLP-LVRLNV-RDQRIGVEGARLLANHPTLTSLDVSNGR----IGPEGARALAGNTRLTT 216
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLE--GCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L +S +++ G L + LT L++ G AC +L+ L LN+NR ++
Sbjct: 217 LSVSHNRIGAEGAKALAASETLTSLDISENGIGDEGAC--ALATNTKLTALNVNRNRIGV 274
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNL 302
+G + + +L L++G N+I DE + L L +LN++ +G +G+ L L
Sbjct: 275 EGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERTRVGADGVGALAASKTL 334
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
S+ + I D R LA +SL +L++++ I+ G AL + T LT L+L I D
Sbjct: 335 TSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGYNGIGD 394
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
+GA L SL + GL+DAG + +LT L+ N + D ++
Sbjct: 395 AGAQAWSANTTLISLSVRRNGLSDAGATTLAASKTLTTLDAGDNT-IRDAGARALAANRT 453
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR-LQSRDLPNL-VSF 476
L +L+V ++ I +AG R L L SL L + +VT ++ L +R L +L VSF
Sbjct: 454 LTTLDVRSNEIENAGARALAANTGLASLDLRNNRVTEAGVRALLANRTLSSLGVSF 509
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 155/339 (45%), Gaps = 5/339 (1%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + L SLD + +I G L G + LT+LS N I A+G KA A L L
Sbjct: 184 LANHPTLTSLDVSNG-RIGPEGARALAGNTRLTTLSVSHNR-IGAEGAKALAASETLTSL 241
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
D+ G L KL +LN+ N I K L+ L SL I + + D G
Sbjct: 242 DISENGIGDEGACALATNTKLTALNVN-RNRIGVEGAKALAAGEALTSLDIGGNDIGDEG 300
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
+ L +LT LN+E V A + +L+A +L L ++ + D G + SL
Sbjct: 301 VRALAANARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTT 360
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316
L++ N I+ L T L +LNL GIGD G + T L S+++ G+SD
Sbjct: 361 LHIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAG 420
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
LA +L +L+ I D G AL + LT LD+ I ++GA L L S
Sbjct: 421 ATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTGLAS 480
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
L++ +T+AGV+ + L++ TL +L + N K E
Sbjct: 481 LDLRNNRVTEAGVRAL--LANRTLSSLGVSFNYCSKPTE 517
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 150/329 (45%), Gaps = 9/329 (2%)
Query: 114 RRNNAITAQGMKAFA-GLINLVKLDLER-CTRIHGGLVNLKGLMKLESLN-IKWCNCITD 170
RR+ + Q ++A + L V+ D+ + R GL +K +L + TD
Sbjct: 72 RRSKPLAVQRLRAVSKPLKAAVEADMRQLVIRDRAGLAGVKRAGNYPALEKLTLIGPFTD 131
Query: 171 SDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+D++ L +L L +S C +T +GIA+L L L LN+ + L+
Sbjct: 132 NDLRGLPA--SLTELDLSRCRGPITAAGIAHLSHL-PLVRLNVRDQRIGVEGARLLANHP 188
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L L+++ ++ +G + L L++ N I E L L SL++ GI
Sbjct: 189 TLTSLDVSNGRIGPEGARALAGNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISENGI 248
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
GDEG L T L ++N++ I + LA +L SL++ I D G+ AL +
Sbjct: 249 GDEGACALATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANA 308
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
LT L++ R+ G L K L SL I + DAG + + +SLT L++ N
Sbjct: 309 RLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESN-G 367
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAG 437
++ + ++ T L +LN+ + I AG
Sbjct: 368 ISPAGAQALAANTTLTTLNLGYNGIGDAG 396
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 136/299 (45%), Gaps = 6/299 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+D+S + + D G L + L +L+ N +I G + L LTSL N+
Sbjct: 237 TLTSLDISENGIGDEGACALATNTKLTALNVNRN-RIGVEGAKALAAGEALTSLDIGGND 295
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G++A A L L++ER G+ L L SL I N I D+ + L+
Sbjct: 296 -IGDEGVRALAANARLTTLNVERTRVGADGVGALAASKTLTSLRID-SNNIGDAGARALA 353
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
T+L +L I + ++ +G L LT LNL + A + SA +L L++ R
Sbjct: 354 TNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRR 413
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
LSD G + +L L+ G N I D L L +L++ S I + G L
Sbjct: 414 NGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALA 473
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD---ARQITDTGLAALTSLTGLTHL 353
T L S++L +++ +R L +L SL + + T++ L A + G+T L
Sbjct: 474 ANTGLASLDLRNNRVTEAGVRALLANRTLSSLGVSFNYCSKPTESALMAWATRNGVTIL 532
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 3/230 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ G +L S+D+ G+D+ D G+ L + L +L+ ++ G+ L LTSL
Sbjct: 281 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 339
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I G +A A +L L +E G L L +LN+ + N I D+
Sbjct: 340 DSNN-IGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 397
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ S T L SL + + ++D+G L + LT L+ + A +L+A +L L
Sbjct: 398 QAWSANTTLISLSVRRNGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTL 457
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ ++ + G + L L+L N +T+ + L L SL +
Sbjct: 458 DVRSNEIENAGARALAANTGLASLDLRNNRVTEAGVRALLANRTLSSLGV 507
>gi|283778456|ref|YP_003369211.1| hypothetical protein Psta_0665 [Pirellula staleyi DSM 6068]
gi|283436909|gb|ADB15351.1| hypothetical protein Psta_0665 [Pirellula staleyi DSM 6068]
Length = 397
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 139/279 (49%), Gaps = 6/279 (2%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
G+ L G++ ++L G T C+D L + L +++++ +S G + + L
Sbjct: 104 EGVHQLHGIRDISL---HGRAFTDKCIDELIKVHQLRGVSISKTSISPAGLARLASCREL 160
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
++L EI D+ L + G+ +++ L + I DEGL + NL ++ + I+D
Sbjct: 161 VSISLWGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAERENLATLEIYVAAITD 220
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ L L L+ L L +TD + + L L L I+D G +L + L
Sbjct: 221 AGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKL 280
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G + G + +L +L L++ S + N+ D+ L I+ L GL L + S++T
Sbjct: 281 EVLLVSGCPIDGTGFAKLCELQNLRLVDAS-STNINDEGLAAIASLPGLTLLEIRQSKVT 339
Query: 435 SAGLRHLKPLKNLRSLTLE-SCKVTANDIKRLQSRDLPN 472
GL+HL+ + LRSL + + ++T +D K L+++ LPN
Sbjct: 340 GKGLQHLERSEQLRSLLISITDELTLDDAKALKAK-LPN 377
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 105/234 (44%), Gaps = 25/234 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
GL L +L S+++ W I D +K ++G+ +++ LQ+ S +TD G+ + +
Sbjct: 149 AGLARLASCRELVSISL-WGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAEREN 207
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L + +T A L SL L L L L ++D + SL+ L L + I+
Sbjct: 208 LATLEIYVAAITDAGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSIS 267
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
DE L L LE L + C I G L L NL ++ S T I+
Sbjct: 268 DEGLTFLSRNEKLEVLLVSGCPIDGTGFAKLCELQNLRLVDASSTNIN------------ 315
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
D GLAA+ SL GLT L++ +++T G +L + LRSL I
Sbjct: 316 ------------DEGLAAIASLPGLTLLEIRQSKVTGKGLQHLERSEQLRSLLI 357
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 134/306 (43%), Gaps = 25/306 (8%)
Query: 40 QYPGVND---------KWMDVIASQ--GSSLLSVDL----SGSDVTDSGLIH-LKDCSNL 83
+YP V D +W+ + + G+++L+V SG D+ +H ++D S L
Sbjct: 59 EYPNVIDGSIQQSNQPRWLRYLFGENFGANVLTVTARGTSSGDDIEGVHQLHGIRDIS-L 117
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
F +D ++ L + L +S + +I+ G+ A LV + L
Sbjct: 118 HGRAF------TDKCIDELIKVHQLRGVSISKT-SISPAGLARLASCRELVSISLWGPEI 170
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L + G+ ++ L + + ITD ++ + NL +L+I + +TD+G+ L L
Sbjct: 171 EDDHLKAVAGIPSVQHLQVI-RSSITDEGLQHFAERENLATLEIYVAAITDAGLKSLVNL 229
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
KL L L G VT + ++ SL L L+ +SD+G S+ L+VL +
Sbjct: 230 PKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKLEVLLVSGCP 289
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
I L L NL ++ S I DEGL + L L + + + ++ L+ L
Sbjct: 290 IDGTGFAKLCELQNLRLVDASSTNINDEGLAAIASLPGLTLLEIRQSKVTGKGLQHLERS 349
Query: 324 SSLKSL 329
L+SL
Sbjct: 350 EQLRSL 355
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 110/252 (43%), Gaps = 27/252 (10%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L V +S + ++ +GL L C L S+ + +I D L+ + G+ ++ L R+ +
Sbjct: 136 LRGVSISKTSISPAGLARLASCRELVSISL-WGPEIEDDHLKAVAGIPSVQHLQVIRS-S 193
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G++ FA NL L++ + ITD+ +K L
Sbjct: 194 ITDEGLQHFAERENLATLEI-------------------------YVAAITDAGLKSLVN 228
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L L+ L++ + VTD + + + L L L+ ++ L LS L L ++ C
Sbjct: 229 LPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKLEVLLVSGC 288
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ G K ++ +L++++ I DE L + L L L + + +GL +L
Sbjct: 289 PIDGTGFAKLCELQNLRLVDASSTNINDEGLAAIASLPGLTLLEIRQSKVTGKGLQHLER 348
Query: 299 LTNLESINLSFT 310
L S+ +S T
Sbjct: 349 SEQLRSLLISIT 360
>gi|290970785|ref|XP_002668255.1| predicted protein [Naegleria gruberi]
gi|284081550|gb|EFC35511.1| predicted protein [Naegleria gruberi]
Length = 295
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 147/292 (50%), Gaps = 2/292 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI + N I D +K +S + L SL I+ + + G Y+ +++LT L++
Sbjct: 1 MKQLTSLNINYNN-IGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISD 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + +S + L LN+ ++ +G + S++ L L++ N I E ++
Sbjct: 60 NNIGVEGVKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYIS 119
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L SL++ IG EG ++ + L S+N+ I D + ++ + L SLN+
Sbjct: 120 EMKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISD 179
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
I G ++ + LT L++ I D GA Y+ K L SL I + D G K+I
Sbjct: 180 NNIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYIS 239
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
++ LT L+++ N + + +LIS + L SLN++++ I G ++L +K
Sbjct: 240 EMKQLTSLDINWN-KIGVEGAKLISEMKQLTSLNINDNNIGVEGAKYLSEMK 290
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 151/314 (48%), Gaps = 27/314 (8%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S++++ +++ D G+ + + L SLD N+ I G +++ + LTSL NN
Sbjct: 4 LTSLNINYNNIGDEGVKLISEMKQLTSLDINYN-NIGVEGAKYISEMKQLTSLDISDNN- 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G+K LI+ +K +L SLNI+ N I K +S
Sbjct: 62 IGVEGVK----LISEMK--------------------QLTSLNIR-INEIGVEGAKYISE 96
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I+C+ + G Y+ +++LT L++ + +S + L LN+ R
Sbjct: 97 MKQLTSLDINCNNIGVEGAKYISEMKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRN 156
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ D+G + S++ L LN+ N I E + + L SLN++ IGDEG ++
Sbjct: 157 EIGDEGAKYISEMKQLTSLNISDNNIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISE 216
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+N+S+ I D + ++ + L SL+++ +I G ++ + LT L++
Sbjct: 217 MKQLTSLNISWNKIGDEGAKYISEMKQLTSLDINWNKIGVEGAKLISEMKQLTSLNINDN 276
Query: 359 RITDSGAAYLRNFK 372
I GA YL K
Sbjct: 277 NIGVEGAKYLSEMK 290
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 148/318 (46%), Gaps = 27/318 (8%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L SL+ N+ I D G++ + + LTSL NN I +G K + + L LD+
Sbjct: 4 LTSLNINYN-NIGDEGVKLISEMKQLTSLDINYNN-IGVEGAKYISEMKQLTSLDISDNN 61
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
G+ + + +L SLNI+ N I K +S + L SL I+C+ + G Y+
Sbjct: 62 IGVEGVKLISEMKQLTSLNIR-INEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISE 120
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT L++ S + +G +G + S++ L LN+ N
Sbjct: 121 MKQLTSLDI-----------SWNNIGV-------------EGAKLISEMKQLTSLNIRRN 156
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
EI DE ++ + L SLN+ IG EG ++ + L S+N+++ I D + ++
Sbjct: 157 EIGDEGAKYISEMKQLTSLNISDNNIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISE 216
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L SLN+ +I D G ++ + LT LD+ +I GA + K L SL I
Sbjct: 217 MKQLTSLNISWNKIGDEGAKYISEMKQLTSLDINWNKIGVEGAKLISEMKQLTSLNINDN 276
Query: 383 GLTDAGVKHIKDLSSLTL 400
+ G K++ ++ T+
Sbjct: 277 NIGVEGAKYLSEMKRKTI 294
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 125/250 (50%), Gaps = 7/250 (2%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+ L LN+N + D+G + S++ L L++ +N I E ++ + L SL++
Sbjct: 1 MKQLTSLNINYNNIGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDN 60
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
IG EG+ ++ + L S+N+ I + ++ + L SL+++ I G ++
Sbjct: 61 NIGVEGVKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISE 120
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ LT LD+ I GA + K L SL I + D G K+I ++ LT LN+S N
Sbjct: 121 MKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDN 180
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TAN 460
N+ + +LIS + L SLN++ + I G +++ +K L SL + K+ +
Sbjct: 181 -NIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYIS 239
Query: 461 DIKRLQSRDL 470
++K+L S D+
Sbjct: 240 EMKQLTSLDI 249
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 139/276 (50%), Gaps = 12/276 (4%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF---NFCIQISDG 97
Y + D+ + +I S+ L S+D++ +++ G ++ + L SLD N ++
Sbjct: 11 YNNIGDEGVKLI-SEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDNNIGVE---- 65
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMK 156
G++ + + LTSL+ R N I +G K + + L LD+ C I G + + +
Sbjct: 66 GVKLISEMKQLTSLNIRI-NEIGVEGAKYISEMKQLTSLDI-NCNNIGVEGAKYISEMKQ 123
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L SL+I W N + K +S + L SL I +++ D G Y+ +++LT LN+ +
Sbjct: 124 LTSLDISWNNIGVEG-AKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDNNI 182
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+S + L LN+N ++ D+G + S++ L LN+ +N+I DE ++ +
Sbjct: 183 GVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISEMK 242
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
L SL+++ IG EG ++ + L S+N++ I
Sbjct: 243 QLTSLDINWNKIGVEGAKLISEMKQLTSLNINDNNI 278
>gi|290981666|ref|XP_002673551.1| predicted protein [Naegleria gruberi]
gi|284087135|gb|EFC40807.1| predicted protein [Naegleria gruberi]
Length = 438
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 166/375 (44%), Gaps = 28/375 (7%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G L S+++ + + + G+ +L +C L S + + IS G +L L LT+L R
Sbjct: 31 GIELTSIEIGYNRIGNEGVKYLSECKELTSANL-YGNNISAEGASYLTKLK-LTNLDIRT 88
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N + A+G K L L L++ G L L +L +L I CN I + K
Sbjct: 89 N-ELGAEGAKFIGQLSQLKILNIGVNDICAEGAKYLVALNQLTNLGIN-CNRIGEEGAKS 146
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-------EGCP------------- 215
+S + L +L IS + + ++G+ Y+ + LT L + EGC
Sbjct: 147 ISEMKQLTNLDISNNYIGETGVEYVSEMGNLTTLTIIENNLRAEGCKKIRKLKQLTRLSI 206
Query: 216 ----VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+ A +S + L +L +N + ++G E S++G+L L++ NEI E H
Sbjct: 207 YDNKIGAEGAKFISEMEQLMFLEINNNSIRNEGTEYISQLGNLTELDISHNEIGSEGAKH 266
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+ L L I E L+ LT L + + + I D S++ + L SL L L
Sbjct: 267 ISQFKQLTCLRFSYNKINAESFEYLSTLTQLTDLRICSSSIGDDSIKSITNLKSLTILYL 326
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+ I+D G ++ LT LT L + I+D G +L L L++ + + G ++
Sbjct: 327 NGNNISDNGCKNISELTQLTDLSMALNNISDEGCKFLSQLTQLTELDVSYNRIGNIGAEY 386
Query: 392 IKDLSSLTLLNLSQN 406
I ++ L L + N
Sbjct: 387 INEMKQLKHLAIQAN 401
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 136/290 (46%), Gaps = 8/290 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L ++D+S + + ++G+ ++ + NL +L + G + +R L LT LS
Sbjct: 148 SEMKQLTNLDISNNYIGETGVEYVSEMGNLTTLTI-IENNLRAEGCKKIRKLKQLTRLSI 206
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I A+G K + + L+ L++ + + G + L L L+I N I
Sbjct: 207 Y-DNKIGAEGAKFISEMEQLMFLEINNNSIRNEGTEYISQLGNLTELDISH-NEIGSEGA 264
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S L L+ S +K+ YL L +LT L + + + S++ L SL L
Sbjct: 265 KHISQFKQLTCLRFSYNKINAESFEYLSTLTQLTDLRICSSSIGDDSIKSITNLKSLTIL 324
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
LN +SD+GC+ S++ L L++ N I+DE L LT L L++ IG+ G
Sbjct: 325 YLNGNNISDNGCKNISELTQLTDLSMALNNISDEGCKFLSQLTQLTELDVSYNRIGNIGA 384
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+ + L+ + I ++R + + LK+L +D ++ T A
Sbjct: 385 EYINEMKQLKHL-----AIQANNIRNESKIDQLKTLLIDKTKVEVTNYKA 429
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 142/308 (46%), Gaps = 25/308 (8%)
Query: 43 GVNDKWMDVIASQGSSLL-------SVDLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQ 93
GVND I ++G+ L ++ ++ + + + G + + L +LD N+
Sbjct: 111 GVND-----ICAEGAKYLVALNQLTNLGINCNRIGEEGAKSISEMKQLTNLDISNNY--- 162
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGG--LVN 150
I + G+E++ + NLT+L+ NN + A+G K L L +L + + G +
Sbjct: 163 IGETGVEYVSEMGNLTTLTIIENN-LRAEGCKKIRKLKQLTRLSIYDNKIGAEGAKFISE 221
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
++ LM LE N N I + + +S L NL L IS +++ G ++ ++LT L
Sbjct: 222 MEQLMFLEINN----NSIRNEGTEYISQLGNLTELDISHNEIGSEGAKHISQFKQLTCLR 277
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ A + LS L L L + + DD + + + SL +L L N I+D
Sbjct: 278 FSYNKINAESFEYLSTLTQLTDLRICSSSIGDDSIKSITNLKSLTILYLNGNNISDNGCK 337
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
++ LT L L++ I DEG L+ LT L +++S+ I + + + LK L
Sbjct: 338 NISELTQLTDLSMALNNISDEGCKFLSQLTQLTELDVSYNRIGNIGAEYINEMKQLKHLA 397
Query: 331 LDARQITD 338
+ A I +
Sbjct: 398 IQANNIRN 405
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 4/166 (2%)
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L SI + + I + ++ L+ L S NL I+ G + LT L LT+LD+ +
Sbjct: 34 LTSIEIGYNRIGNEGVKYLSECKELTSANLYGNNISAEGASYLTKLK-LTNLDIRTNELG 92
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGL 420
GA ++ L+ L I + G K++ L+ LT NL NCN + ++ + IS +
Sbjct: 93 AEGAKFIGQLSQLKILNIGVNDICAEGAKYLVALNQLT--NLGINCNRIGEEGAKSISEM 150
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
L +L++SN+ I G+ ++ + NL +LT+ + A K+++
Sbjct: 151 KQLTNLDISNNYIGETGVEYVSEMGNLTTLTIIENNLRAEGCKKIR 196
>gi|283777859|ref|YP_003368614.1| serine/threonine protein kinase [Pirellula staleyi DSM 6068]
gi|283436312|gb|ADB14754.1| serine/threonine protein kinase [Pirellula staleyi DSM 6068]
Length = 1487
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 123/429 (28%), Positives = 193/429 (44%), Gaps = 76/429 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL-------T 109
S L +DLS + +TD GL L S L+ L + +SD GLE L +L T
Sbjct: 743 SQLAELDLSSTKITDQGLTRLLALSKLERLYLSDN-SLSDNGLEQLAMAKSLRLLVASGT 801
Query: 110 SLSFRRNNAITAQGMKAF-----AGLINLVKLDL-ERCTR-----IHGGLVNLK------ 152
LS R + +TA + A + V L L ER R + G +V +
Sbjct: 802 MLSERGHGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRGNIVPVVARREDL 861
Query: 153 --GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
G +K+ ++ C I D D+KPL L +L+SL +S +K+T +G+A L GL L ++
Sbjct: 862 PIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLANLHGLASLKSID 921
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-------- 262
L P+T A +++L+A L C++ + E K+ + VL++G
Sbjct: 922 LGTLPLTTASVETLAA-------ALPDCKI--ERREPADKLVARWVLSVGGKCTITSDES 972
Query: 263 ----EITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLTNLESINLSFTGISDGSL 317
E+T V + ++E +NL C IG D L ++ L NL+S+ L + I+D L
Sbjct: 973 ASQVELTSATTVLPEAAIHVEKINLTDCKIGPDAPLASIAELANLKSLLLVGSDITDAQL 1032
Query: 318 RKLAG-------------------------LSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+AG L L+ L L ++ L A+T+L L+H
Sbjct: 1033 TSIAGLKSLSELSLSDTAVTAPAVNGLLAQLPQLQRLYLSGTKVDRGVLVAVTNLPKLSH 1092
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L L G + S + L+ L L++ GL+D + + LSSL L + +N LTD
Sbjct: 1093 LSLAGIEVAPSDLSLLKKCPQLEWLDLSSTGLSDEASQQLVGLSSLRELAVPKN-PLTDA 1151
Query: 413 -TLELISGL 420
ELI+ +
Sbjct: 1152 GQEELIAAM 1160
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 169/352 (48%), Gaps = 33/352 (9%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+G +V S L LK C L+ LD + +SD + L GLS+L L+ +N A
Sbjct: 1095 LAGIEVAPSDLSLLKKCPQLEWLDLS-STGLSDEASQQLVGLSSLRELAVPKNPLTDAGQ 1153
Query: 124 MKAFAGLIN-------------LVKLDLERCTRIH---GGLVNLKGLMK----------L 157
+ A + N + LE+ + G + + K L +
Sbjct: 1154 EELIAAMPNCHVVGDPLDPQRLAARWILEKRGTVELDTGAVTSPKELPRDKCHVLAIDLA 1213
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
E N+K I + ++G + L+SL++S + +TD+ +A + L+ L L L +T
Sbjct: 1214 ELANLKAAEVI-----QVIAGCSELESLRLSDTAITDADLAAIGKLKLLKKLYLANLAIT 1268
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
L L+ L L L+++ +++ G F SL+ LNL +TD L + +T+
Sbjct: 1269 DDGLAKLAELELLEVLDVSGGRITGAGLANFRSASSLQELNLSNTMLTDPNLAAIAPMTS 1328
Query: 278 LESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L SL++ +C G+ D GL L GLT L S+ L T ++D + LA + L+ L+LD+ I
Sbjct: 1329 LISLDMSACRGVSDAGLKKLAGLTQLRSLGLRGTKLTDAAAESLASYAKLEQLDLDSTSI 1388
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
D+G+ L SLT L L L +TD G A L K+LRS+ + +T+A
Sbjct: 1389 GDSGVEKLLSLTSLRRLVLAKTSVTDGGVASLAKLKDLRSVSLVRTSVTEAA 1440
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 120/442 (27%), Positives = 191/442 (43%), Gaps = 39/442 (8%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
+L++D G VTDS L L+ L+ L I+D G+ L L +L LS R A
Sbjct: 673 ILAIDFEGRGVTDSDLASLELAPGLRQLSL-AATPITDTGIASLAKLKSLAKLSLART-A 730
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G+++ A L L +LDL GL L L KLE L + N ++D+ ++ L+
Sbjct: 731 ITNKGLESLARLSQLAELDLSSTKITDQGLTRLLALSKLERLYLS-DNSLSDNGLEQLAM 789
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+L+ L S + +++ G L T + +G + L G+ + R
Sbjct: 790 AKSLRLLVASGTMLSERGHGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRG 849
Query: 239 QLSDDGCEKFS-KIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + IG LKVL + F I D+ L L L +LESL L I GL
Sbjct: 850 NIVPVVARREDLPIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLA 909
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT----------GLAAL 344
NL GL +L+SI+L ++ S+ LA ++L ++ R+ D G +
Sbjct: 910 NLHGLASLKSIDLGTLPLTTASVETLA--AALPDCKIERREPADKLVARWVLSVGGKCTI 967
Query: 345 TSLTGLTHLDLFGARI--------------------TDSGAAYLRNFKNLRSLEICGGGL 384
TS + ++L A D+ A + NL+SL + G +
Sbjct: 968 TSDESASQVELTSATTVLPEAAIHVEKINLTDCKIGPDAPLASIAELANLKSLLLVGSDI 1027
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
TDA + I L SL+ L+LS L++ L L L +S +++ L + L
Sbjct: 1028 TDAQLTSIAGLKSLSELSLSDTAVTAPAVNGLLAQLPQLQRLYLSGTKVDRGVLVAVTNL 1087
Query: 445 KNLRSLTLESCKVTANDIKRLQ 466
L L+L +V +D+ L+
Sbjct: 1088 PKLSHLSLAGIEVAPSDLSLLK 1109
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 152/336 (45%), Gaps = 47/336 (13%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L L+ L +S +KV + + L KL+ L+L G V + L L L +L+L
Sbjct: 1060 LAQLPQLQRLYLSGTKVDRGVLVAVTNLPKLSHLSLAGIEVAPSDLSLLKKCPQLEWLDL 1119
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLV------HLKG------------ 274
+ LSD+ ++ + SL+ L + N +TD E L+ H+ G
Sbjct: 1120 SSTGLSDEASQQLVGLSSLRELAVPKNPLTDAGQEELIAAMPNCHVVGDPLDPQRLAARW 1179
Query: 275 --------------LTNLESLNLDSCGI------------GDEGLVNLTGLTNLESINLS 308
+T+ + L D C + E + + G + LES+ LS
Sbjct: 1180 ILEKRGTVELDTGAVTSPKELPRDKCHVLAIDLAELANLKAAEVIQVIAGCSELESLRLS 1239
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
T I+D L + L LK L L ITD GLA L L L LD+ G RIT +G A
Sbjct: 1240 DTAITDADLAAIGKLKLLKKLYLANLAITDDGLAKLAELELLEVLDVSGGRITGAGLANF 1299
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
R+ +L+ L + LTD + I ++SL L++S ++D L+ ++GLT L SL +
Sbjct: 1300 RSASSLQELNLSNTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKKLAGLTQLRSLGL 1359
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+++T A L L L L+S + + +++
Sbjct: 1360 RGTKLTDAAAESLASYAKLEQLDLDSTSIGDSGVEK 1395
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 126/267 (47%), Gaps = 4/267 (1%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
++ EG VT + L SL L L+L ++D G +K+ SL L+L IT++
Sbjct: 676 IDFEGRGVTDSDLASLELAPGLRQLSLAATPITDTGIASLAKLKSLAKLSLARTAITNKG 735
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L L L+ L L+L S I D+GL L L+ LE + LS +SD L +LA SL+
Sbjct: 736 LESLARLSQLAELDLSSTKITDQGLTRLLALSKLERLYLSDNSLSDNGLEQLAMAKSLRL 795
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDA 387
L +++ G LT+ T + GA + A L L ++ G +
Sbjct: 796 LVASGTMLSERGHGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRGNIVPVV 855
Query: 388 GVKHIKDLSSLTLLNLS-QNC-NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
+ + L +L + C + D L+ + L L SL +S ++IT AGL +L L
Sbjct: 856 ARREDLPIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLANLHGLA 915
Query: 446 NLRSLTLESCKVTANDIKRLQSRDLPN 472
+L+S+ L + +T ++ L + LP+
Sbjct: 916 SLKSIDLGTLPLTTASVETLAAA-LPD 941
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 78/155 (50%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT G+ F +L +L+L L + + L SL++ C ++D+ +K L+G
Sbjct: 1291 ITGAGLANFRSASSLQELNLSNTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKKLAG 1350
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LT L+SL + +K+TD+ L KL L+L+ + + ++ L +L SL L L +
Sbjct: 1351 LTQLRSLGLRGTKLTDAAAESLASYAKLEQLDLDSTSIGDSGVEKLLSLTSLRRLVLAKT 1410
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
++D G +K+ L+ ++L +T+ L+
Sbjct: 1411 SVTDGGVASLAKLKDLRSVSLVRTSVTEAACTELE 1445
>gi|290999054|ref|XP_002682095.1| predicted protein [Naegleria gruberi]
gi|284095721|gb|EFC49351.1| predicted protein [Naegleria gruberi]
Length = 357
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 155/306 (50%), Gaps = 13/306 (4%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESL 160
+ NLT L+ ++ G+K+ L +L+ L C +G G + L KLESL
Sbjct: 35 MKNLTHLTLG-SHFTNEDGLKSIGTLKHLIHL----CVDFNGIGLEGANYISQLEKLESL 89
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+I++ N I K +S + L L +S +++ G + +++LT L++ V
Sbjct: 90 SIRY-NYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDNKVGDEE 148
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+ LS L L L+++R ++ DG SK+ L L++ I DEC L + L
Sbjct: 149 VILLSELDQLTALSIDR--INPDGINAISKMNKLVSLSINNCTILDEC-EELSKMKQLTL 205
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L++ S GI +G+ L+GL+ L +N+S D + ++ + L L ++ QI+D G
Sbjct: 206 LDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQISDDG 265
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+ +L L LT LD+ ITD G+ YL + L +LE+ L+ GVKH+ +++ LT
Sbjct: 266 MKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTALEVNNNELSYQGVKHMINMNQLTA 325
Query: 401 LNLSQN 406
L++ N
Sbjct: 326 LSIRHN 331
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 177/339 (52%), Gaps = 11/339 (3%)
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
++ G V +K L L +L + N + +K + L +L L + + + G Y+
Sbjct: 27 KVIQGFVLMKNLTHL-TLGSHFTN---EDGLKSIGTLKHLIHLCVDFNGIGLEGANYISQ 82
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L+KL L++ + A +S + +L +LN++ ++ +G + S++ L L++G N
Sbjct: 83 LEKLESLSIRYNYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDN 142
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
++ DE ++ L L L +L++D I +G+ ++ + L S++++ I D +L+
Sbjct: 143 KVGDEEVILLSELDQLTALSIDR--INPDGINAISKMNKLVSLSINNCTILD-ECEELSK 199
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L L++ + I+ G+ L+ L+ LTHL++ D GA + K L L +
Sbjct: 200 MKQLTLLDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDC 259
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
++D G+K + DL+ LT+L++S N +TD+ ++ L L +L V+N+ ++ G++H+
Sbjct: 260 QISDDGMKSLGDLNELTILDISNNY-ITDEGSLYLTKLEKLTALEVNNNELSYQGVKHMI 318
Query: 443 PLKNLRSLTLESCKVT--ANDI-KRLQSRDLPNLVSFRP 478
+ L +L++ + T N++ + + L N +SFR
Sbjct: 319 NMNQLTALSIRHNQFTFVQNEVFSQFKQLKLLNGISFRE 357
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 116/257 (45%), Gaps = 26/257 (10%)
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+L N L + F + +L L LG + ++ L + L +L L +D GIG E
Sbjct: 16 FLTFNYNTLGAKVIQGFVLMKNLTHLTLGSHFTNEDGLKSIGTLKHLIHLCVDFNGIGLE 75
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G ++ L LES+++ + I + ++ + +L LN+ + +I G A++ + LT
Sbjct: 76 GANYISQLEKLESLSIRYNYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLT 135
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
+LD+ ++ D L L +L I + G+ I ++ L L+++ NC + D
Sbjct: 136 YLDIGDNKVGDEEVILLSELDQLTALSI--DRINPDGINAISKMNKLVSLSIN-NCTILD 192
Query: 412 KTLEL-----------------------ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
+ EL +SGL+ L LN+S++ G + + +K L
Sbjct: 193 ECEELSKMKQLTLLDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLT 252
Query: 449 SLTLESCKVTANDIKRL 465
L + C+++ + +K L
Sbjct: 253 ELFVNDCQISDDGMKSL 269
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 4/212 (1%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
+K L +N + + + + NL L L S ++GL ++ L +L + + F GI
Sbjct: 14 IKFLTFNYNTLGAKVIQGFVLMKNLTHLTLGSHFTNEDGLKSIGTLKHLIHLCVDFNGIG 73
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
++ L L+SL++ I G ++ + LT L++ RI GA + K
Sbjct: 74 LEGANYISQLEKLESLSIRYNYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQ 133
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L L+I + D V + +L LT L++ + + + IS + LVSL+++N I
Sbjct: 134 LTYLDIGDNKVGDEEVILLSELDQLTALSIDR---INPDGINAISKMNKLVSLSINNCTI 190
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
L +K L L ++S ++A +K+L
Sbjct: 191 LDE-CEELSKMKQLTLLDIKSNGISAKGVKQL 221
>gi|242089917|ref|XP_002440791.1| hypothetical protein SORBIDRAFT_09g006650 [Sorghum bicolor]
gi|241946076|gb|EES19221.1| hypothetical protein SORBIDRAFT_09g006650 [Sorghum bicolor]
Length = 608
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 127/515 (24%), Positives = 216/515 (41%), Gaps = 90/515 (17%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++ +F L R L LE F +++++ L + V+ +W+ + S +
Sbjct: 44 LPAPLADALFRRLAARRLLFPSLLEVFSR-SVEEVDLSGFLSVDAEWLAYLGSFRFLRVL 102
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++ + + L + L+ LD + C +ISD G++H+ + +L L +T
Sbjct: 103 TLADCKNIDNDAVWSLSGMNTLKDLDLSRCKKISDAGIKHIVTIESLEKLHLSETE-LTN 161
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+ + L NL LDL GG++ +TD ++ L LT
Sbjct: 162 NGVMLISSLTNLSFLDL-------GGIL------------------MTDKSLQSLQVLTR 196
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-------GCPVTAACLD------------ 222
L+ L I S+ T+ G + LK +L LNL P T CL+
Sbjct: 197 LEHLDIWGSETTNEGASTLKSFARLIFLNLALTRVNHLSIPPTTRCLNMSNCEIHSICDE 256
Query: 223 -------------SLSALG------------SLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
S + G SL +L+L+ C+LS+ K+ +L+ L
Sbjct: 257 DSEVPVPLENFIVSAATFGNIDKVFSSIQASSLTHLDLSSCKLSN--LSFLEKMKNLEHL 314
Query: 258 NLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTG-LTNLESINLSFTGISDG 315
+L +N ITD + H+ L TNL+ L+L + GI + L L G + NL S++L+ T I D
Sbjct: 315 DLSYNIITDGAIEHIAKLGTNLQYLSLKNTGITSQALCILAGTVPNLTSLSLANTKIDDS 374
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+L + + L++++L I L + G TH+ F + K L
Sbjct: 375 ALAYIGMIPLLRTIDLSQTSIKGCALENKFYLMAGFTHMSAF------------EHLKYL 422
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
SL + L+ + + L++L L L + L+D L +S + L+ L + ++
Sbjct: 423 ESLNLEDTPLSAEVIPPLASLAALKYLYLKSDF-LSDPALHALSAASNLIHLGFCGNILS 481
Query: 435 SAGLRHLKPLKNLRSLTLESCKV-TANDIKRLQSR 468
S+GL P L L L C + T I + R
Sbjct: 482 SSGLLQFVPPTTLCVLDLSGCWILTGEAISTFRKR 516
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 132/284 (46%), Gaps = 29/284 (10%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 273
V A L L + L L L C+ + +D S + +LK L+L +I+D + H+
Sbjct: 85 VDAEWLAYLGSFRFLRVLTLADCKNIDNDAVWSLSGMNTLKDLDLSRCKKISDAGIKHIV 144
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ +LE L+L + + G++ ++ LTNL ++L ++D SL+ L L+ L+ L++
Sbjct: 145 TIESLEKLHLSETELTNNGVMLISSLTNLSFLDLGGILMTDKSLQSLQVLTRLEHLDIWG 204
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLR--NFKNLRSLEICGG-------- 382
+ T+ G + L S L L+L R+ S R N N IC
Sbjct: 205 SETTNEGASTLKSFARLIFLNLALTRVNHLSIPPTTRCLNMSNCEIHSICDEDSEVPVPL 264
Query: 383 ----------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
G D I+ SSLT L+LS +C L++ L + + L L++S +
Sbjct: 265 ENFIVSAATFGNIDKVFSSIQA-SSLTHLDLS-SCKLSN--LSFLEKMKNLEHLDLSYNI 320
Query: 433 ITSAGLRHLKPL-KNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
IT + H+ L NL+ L+L++ +T+ + L +PNL S
Sbjct: 321 ITDGAIEHIAKLGTNLQYLSLKNTGITSQALCILAG-TVPNLTS 363
>gi|406834160|ref|ZP_11093754.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
Length = 390
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 141/267 (52%), Gaps = 8/267 (2%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
+ L+ P+ L L L L+L +++D G + S + L+ L+L +I+D
Sbjct: 95 ITLDQSPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSRTKISDAG 154
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L HL+ L NL L + + D G L GL NL +N+S T ++D SL+ ++ + +L +
Sbjct: 155 LEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLNVSKTNVTDTSLKVISEIPNLNT 214
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN--LRSLEICGGGLTD 386
L LD +TD GLA+L LT L L G +T S +L+ K L L +
Sbjct: 215 LILDGCNLTDVGLASLKDCQSLTFLSLDGIPLTGS---FLKELKGIPLEYLTLANSKCDG 271
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
K + L +L +L+L +NC + D ++ I+ + L +L++ N++IT + LK + +
Sbjct: 272 TTFKDVGTLKNLKMLSL-ENCPVEDASIASIAAIASLETLSLDNTKITEQAIVELKDMPS 330
Query: 447 LRSLTLESCKVTANDIKRLQSRDLPNL 473
L SL++ S ++A ++++L++ PNL
Sbjct: 331 LVSLSINSTPISAEELRQLKAT--PNL 355
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 140/310 (45%), Gaps = 52/310 (16%)
Query: 36 LCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
+ L Q P +D + Q L+ + L + +TD+GL +L LQ LD + +IS
Sbjct: 95 ITLDQSPIGDDDL--AVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSRT-KIS 151
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
D GLEHL+ L +NL +L + + G L GL
Sbjct: 152 DAGLEHLQTL-------------------------VNLCELTIAETSVTDAGTAKLAGLK 186
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L LN+ N +TD+ +K +S + NL +L + +TD G+A LK Q LT L+L+G P
Sbjct: 187 NLRVLNVSKTN-VTDTSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQSLTFLSLDGIP 245
Query: 216 VTAACLDSLSAL-------------GSLF----------YLNLNRCQLSDDGCEKFSKIG 252
+T + L L + G+ F L+L C + D + I
Sbjct: 246 LTGSFLKELKGIPLEYLTLANSKCDGTTFKDVGTLKNLKMLSLENCPVEDASIASIAAIA 305
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
SL+ L+L +IT++ +V LK + +L SL+++S I E L L NL+ + T +
Sbjct: 306 SLETLSLDNTKITEQAIVELKDMPSLVSLSINSTPISAEELRQLKATPNLKLVKAHNTKV 365
Query: 313 SDGSLRKLAG 322
+ G + LA
Sbjct: 366 TRGDVDALAA 375
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 91/382 (23%), Positives = 173/382 (45%), Gaps = 49/382 (12%)
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
D++ I++ D + SL R + A+ A + L ++V D + + +G
Sbjct: 44 DYSPVIEVKD----------RVNSLGGRAHMAVAAPAV-----LQSIVGKDWDGWDQFYG 88
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G ++++ + + + I D D+ L L L + +K+TD+G+ YL + +L
Sbjct: 89 G-------VEVDQITLDQ-SPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRL 140
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L+L ++ A L+ L L +L L + ++D G K + + +L+VLN+ +TD
Sbjct: 141 QKLDLSRTKISDAGLEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLNVSKTNVTD 200
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L + + NL +L LD C + D GL +L +L ++L ++ L++L G+ L
Sbjct: 201 TSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQSLTFLSLDGIPLTGSFLKELKGI-PL 259
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L L + T + +L L L L + D+ A + +L +L + +T+
Sbjct: 260 EYLTLANSKCDGTTFKDVGTLKNLKMLSLENCPVEDASIASIAAIASLETLSLDNTKITE 319
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
+ +KD+ S LVSL+++++ I++ LR LK N
Sbjct: 320 QAIVELKDMPS-------------------------LVSLSINSTPISAEELRQLKATPN 354
Query: 447 LRSLTLESCKVTANDIKRLQSR 468
L+ + + KVT D+ L +
Sbjct: 355 LKLVKAHNTKVTRGDVDALAAE 376
>gi|290996590|ref|XP_002680865.1| predicted protein [Naegleria gruberi]
gi|284094487|gb|EFC48121.1| predicted protein [Naegleria gruberi]
Length = 304
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 143/297 (48%), Gaps = 10/297 (3%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLM 155
+++ L ++T LSF + + K F+ L NL LDL E T H ++L M
Sbjct: 2 IDYFPTLESVTDLSFNHH-QVRITNTKIFSKLKNLTALDLSYNELVTDAHVKEISLIPSM 60
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+ LNI +C I + +S + L+SL + ++ +AYLK L L LN P
Sbjct: 61 R--RLNI-FCTDIGKQSIVYISEMKLLESLILGELRLEAESVAYLKKLTNLKELNC--SP 115
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ LS + SL L LN ++ E SK+ SL L L + I + L +
Sbjct: 116 DSYGTSAHLSEMKSLNSLILNVKYNKEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNI 175
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
++ SLNL I D GLVN+ L NL +NLS+ G+SD + L L L LNL+
Sbjct: 176 SSFTSLNLSGNVIRDAGLVNIGKLANLTFLNLSYNGLSDSGITNLGNLRKLTDLNLNGNN 235
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
I D G ++ + L +L L +IT +GA YL N +L SL++ L D ++ I
Sbjct: 236 IEDQGAKIISKFSHLKYLQLRNNQITKNGANYLSNLNSLYSLDLRENKL-DYKIEKI 291
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 135/265 (50%), Gaps = 4/265 (1%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLK 255
I Y L+ +T L+ V S L +L L+L+ +L +D ++ S I S++
Sbjct: 2 IDYFPTLESVTDLSFNHHQVRITNTKIFSKLKNLTALDLSYNELVTDAHVKEISLIPSMR 61
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
LN+ +I + +V++ + LESL L + E + L LTNL+ +N S S G
Sbjct: 62 RLNIFCTDIGKQSIVYISEMKLLESLILGELRLEAESVAYLKKLTNLKELNCS--PDSYG 119
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+ L+ + SL SL L+ + + + ++ LT L HL L+ + I GA +L N +
Sbjct: 120 TSAHLSEMKSLNSLILNVKYNKEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNISSFT 179
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
SL + G + DAG+ +I L++LT LNLS N L+D + + L L LN++ + I
Sbjct: 180 SLNLSGNVIRDAGLVNIGKLANLTFLNLSYNG-LSDSGITNLGNLRKLTDLNLNGNNIED 238
Query: 436 AGLRHLKPLKNLRSLTLESCKVTAN 460
G + + +L+ L L + ++T N
Sbjct: 239 QGAKIISKFSHLKYLQLRNNQITKN 263
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 9/191 (4%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL--SFRRNNAITAQGMKAFAGLINL 133
+LK +NL+ L+ C S G HL + +L SL + + N + ++ + L +L
Sbjct: 101 YLKKLTNLKELN---CSPDSYGTSAHLSEMKSLNSLILNVKYN---KEEDIENISKLTSL 154
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L G L + SLN+ N I D+ + + L NL L +S + ++
Sbjct: 155 NHLKLWNSNINSKGAEFLSNISSFTSLNLS-GNVIRDAGLVNIGKLANLTFLNLSYNGLS 213
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
DSGI L L+KLT LNL G + +S L YL L Q++ +G S + S
Sbjct: 214 DSGITNLGNLRKLTDLNLNGNNIEDQGAKIISKFSHLKYLQLRNNQITKNGANYLSNLNS 273
Query: 254 LKVLNLGFNEI 264
L L+L N++
Sbjct: 274 LYSLDLRENKL 284
>gi|356513289|ref|XP_003525346.1| PREDICTED: uncharacterized protein LOC100814174 [Glycine max]
Length = 589
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 120/448 (26%), Positives = 194/448 (43%), Gaps = 67/448 (14%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
LE F+ A + G V+ +WM + + L ++LS V+ S L + S+L
Sbjct: 58 LEVFKHSAEEVDVRGDN-SVDAEWMAYLGAY-RHLRYLNLSDCHRVSTSALWPITGMSSL 115
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
Q LD + C +++D G+ H+ + NL L ++TA+G+K A L NL LDL
Sbjct: 116 QELDLSRCFKVNDAGINHILSIPNLERLRISET-SVTAKGVKLLASLKNLSLLDLGGLPV 174
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L +L+ L +L +++ W + I++ L+ L L ++ + VT L L
Sbjct: 175 DDVALTSLQVLKRLHYIDL-WGSKISNKGASVLNTFPKLTYLNLAWTSVTK-----LPKL 228
Query: 204 QKLTLLNLEGCPVTAACLDSLSAL------GSLF-------------------------- 231
L LN+ C + + D + L G++F
Sbjct: 229 SFLEYLNMSNCTIDSILEDDKAPLAKLILSGAMFMNEAEALLYANTNFLSFLDVANSSFH 288
Query: 232 ------------YLNLNRCQLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKG-LTN 277
+LNL+ C + DD E + G+LK LNL ++ L L G + +
Sbjct: 289 RFFFLSKMKVIEHLNLSSCMMGDDSVEMVACAGGNLKSLNLSGTRVSSAGLGILAGHVPH 348
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD---------GSLRKLAGLSSLK- 327
LE L+L + D + ++ + +L+ ++LS T I SL L L +LK
Sbjct: 349 LEILSLSQTPVDDTAISFISMMPSLKDVDLSNTNIKGFLHQGRTDVNSLLSLMALQNLKL 408
Query: 328 -SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
LNL+ Q+ D L L+S L +L L A + D YL + L +L IC LT+
Sbjct: 409 ERLNLEHTQVRDEALYPLSSFQELRYLSLKSASLADISLYYLSSIPKLTNLSICDAVLTN 468
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
G+ K +L LL+L LT+ T+
Sbjct: 469 YGLDMFKAPETLKLLDLKGCWLLTEDTI 496
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 174/398 (43%), Gaps = 50/398 (12%)
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSD 172
R +N++ A+ M +L L+L C R+ L + G+ L+ L++ C + D+
Sbjct: 71 RGDNSVDAEWMAYLGAYRHLRYLNLSDCHRVSTSALWPITGMSSLQELDLSRCFKVNDAG 130
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ + + NL+ L+IS + VT G+ L L+ L+LL+L G PV L SL L L Y
Sbjct: 131 INHILSIPNLERLRISETSVTAKGVKLLASLKNLSLLDLGGLPVDDVALTSLQVLKRLHY 190
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--- 289
++L ++S+ G + L LNL + +T L L+ LE LN+ +C I
Sbjct: 191 IDLWGSKISNKGASVLNTFPKLTYLNLAWTSVTK-----LPKLSFLEYLNMSNCTIDSIL 245
Query: 290 ------------------DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK---S 328
+E L TN LSF +++ S + LS +K
Sbjct: 246 EDDKAPLAKLILSGAMFMNEAEALLYANTNF----LSFLDVANSSFHRFFFLSKMKVIEH 301
Query: 329 LNLDARQITDTGLAALTSLTG-LTHLDLFGARITDSGAAYLR-NFKNLRSLEICGGGLTD 386
LNL + + D + + G L L+L G R++ +G L + +L L + + D
Sbjct: 302 LNLSSCMMGDDSVEMVACAGGNLKSLNLSGTRVSSAGLGILAGHVPHLEILSLSQTPVDD 361
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS-----------LNVSNSRITS 435
+ I + SL ++LS N N+ + + + L+S LN+ ++++
Sbjct: 362 TAISFISMMPSLKDVDLS-NTNIKGFLHQGRTDVNSLLSLMALQNLKLERLNLEHTQVRD 420
Query: 436 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
L L + LR L+L+S + DI +P L
Sbjct: 421 EALYPLSSFQELRYLSLKSASLA--DISLYYLSSIPKL 456
>gi|434405931|ref|YP_007148816.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
gi|428260186|gb|AFZ26136.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
Length = 451
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 117/357 (32%), Positives = 181/357 (50%), Gaps = 83/357 (23%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD------------------------------------ 194
SD+KPLS LTNL +L +S ++++D
Sbjct: 84 SDIKPLSNLTNLTTLDLSENQISDIKPLSNLTNLTDIDLSSNQISDIKVLSNLTNLTDID 143
Query: 195 ------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
S I L L LT+L+L ++ + LS L +L + L+ Q+SD E
Sbjct: 144 LSKNQISDIKVLSNLTNLTVLDLSDNQISDIKV--LSNLTNLTSVKLSENQISD--IEVL 199
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
S + +L VL+LG+N+I+D + L LTNL L+L + IGD + L+ LTNL S++L
Sbjct: 200 SNLTNLTVLDLGYNQISD--IKVLSNLTNLTYLSLWNNQIGDIKV--LSNLTNLTSLSLW 255
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
ISD ++ L+ L++L SL L QI+D + L++LT LT+L L+ +I D L
Sbjct: 256 DNQISD--IKPLSNLTNLTSLYLWDNQISD--IKPLSNLTNLTYLYLWDNQIADIKP--L 309
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN--------CNLTDKT------- 413
N NL L++ + D +K + +L+SLT L+LS+N NLT+ T
Sbjct: 310 SNLTNLTDLDLSKNQIGD--IKPLSNLTSLTSLDLSKNQIADIKPLSNLTNLTSLSLWRN 367
Query: 414 ----LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT-LESCKVTANDIKRL 465
+EL+S LT L SL++S ++I+ +KPL NL +LT ++ + +DIK L
Sbjct: 368 QSIDIELLSNLTNLTSLDLSENQIS-----DIKPLSNLTNLTDIDLSENQISDIKPL 419
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 130/418 (31%), Positives = 219/418 (52%), Gaps = 48/418 (11%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++L S+++D + L + +NL +LD +S+ + ++ LSNLT+L+ ++
Sbjct: 76 LNLESSEISD--IKPLSNLTNLTTLD------LSENQISDIKPLSNLTNLTDIDLSSNQI 127
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+K + L NL +DL + + ++K L L +L + + SD+K LS LTN
Sbjct: 128 SDIKVLSNLTNLTDIDLSK-----NQISDIKVLSNLTNLTVLDLSDNQISDIKVLSNLTN 182
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L S+++S ++++D I L L LT+L+L ++ + LS L +L YL+L Q+
Sbjct: 183 LTSVKLSENQISD--IEVLSNLTNLTVLDLGYNQISDIKV--LSNLTNLTYLSLWNNQIG 238
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
D + S + +L L+L N+I+D + L LTNL SL L I D + L+ LTN
Sbjct: 239 D--IKVLSNLTNLTSLSLWDNQISD--IKPLSNLTNLTSLYLWDNQISD--IKPLSNLTN 292
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L + L I+D ++ L+ L++L L+L QI D + L++LT LT LDL +I
Sbjct: 293 LTYLYLWDNQIAD--IKPLSNLTNLTDLDLSKNQIGD--IKPLSNLTSLTSLDLSKNQIA 348
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
D L N NL SL + D ++ + +L++LT L+LS+N ++D ++ +S LT
Sbjct: 349 DIKP--LSNLTNLTSLSLWRNQSID--IELLSNLTNLTSLDLSEN-QISD--IKPLSNLT 401
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
L +++S ++I+ +KPL NL LE ++ N I L + F PE
Sbjct: 402 NLTDIDLSENQIS-----DIKPLSNLTK--LEDLQIQNNPI-------LDKICPFIPE 445
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 34/166 (20%)
Query: 48 WMDVIA-----SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
W + IA S ++L +DLS + + D + L + ++L SLD + QI+D ++ L
Sbjct: 299 WDNQIADIKPLSNLTNLTDLDLSKNQIGD--IKPLSNLTSLTSLDLSKN-QIAD--IKPL 353
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L+NLTSLS RN +I ++ + L NL LDL + ++K L L +L
Sbjct: 354 SNLTNLTSLSLWRNQSI---DIELLSNLTNLTSLDLS-----ENQISDIKPLSNLTNL-- 403
Query: 163 KWCNCITD--------SDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
TD SD+KPLS LT L+ LQI + + D ++
Sbjct: 404 ------TDIDLSENQISDIKPLSNLTKLEDLQIQNNPILDKICPFI 443
>gi|46447568|ref|YP_008933.1| hypothetical protein pc1934 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401209|emb|CAF24658.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 261
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 145/244 (59%), Gaps = 12/244 (4%)
Query: 182 LKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ 239
LK L +S CSK+T++G+A+L L+ L LNL C +T A L L+ L +L +L L+ C+
Sbjct: 3 LKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYCE 62
Query: 240 -LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 296
L+D G + + +L+ L L +TD LVHL LT+L+ L+L +C + D+GLV+L
Sbjct: 63 NLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLVHL 122
Query: 297 TGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD--ARQITDTGLAALTSLTGLTHL 353
T LT L+ + LS ++D L L L++L++L L + +T GLA L LT L L
Sbjct: 123 TPLTALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTALQTL 182
Query: 354 DL-FGARITDSGAAYLRNFKNLRSL--EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
DL + + D+G A+L L++L + C LTDAG+ H+K L++L L+LS +LT
Sbjct: 183 DLSYCKNLKDAGLAHLTPLTALQTLGLKWCSK-LTDAGLAHLKPLAALQHLDLSHCRSLT 241
Query: 411 DKTL 414
D L
Sbjct: 242 DAGL 245
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 139/259 (53%), Gaps = 31/259 (11%)
Query: 206 LTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE 263
L LNL GC +T A L L+ L +L +LNL+RC +L+D G + + +L+ L L + E
Sbjct: 3 LKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYCE 62
Query: 264 -ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
+TD L HL LT L+ L L +C + D GLV+LT LT+L+ ++LS
Sbjct: 63 NLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLS------------- 109
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI- 379
+ +TD GL LT LT L HL L G +TD+G A+L L++L +
Sbjct: 110 ----------NCMNLTDDGLVHLTPLTALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLR 159
Query: 380 -CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAG 437
LT G+ H+ L++L L+LS NL D L ++ LT L +L + S++T AG
Sbjct: 160 RWCQNLTGDGLAHLAPLTALQTLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAG 219
Query: 438 LRHLKPLKNLRSLTLESCK 456
L HLKPL L+ L L C+
Sbjct: 220 LAHLKPLAALQHLDLSHCR 238
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 133/256 (51%), Gaps = 10/256 (3%)
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++LSG S +T++GL HL LQ L+ + C +++D GL HL L+ L L +T
Sbjct: 6 LNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYCENLT 65
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
G+ A L L L L C + GLV+L L L+ L++ C +TD + L+ L
Sbjct: 66 DAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLVHLTPL 125
Query: 180 TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL-EGCP-VTAACLDSLSALGSLFYLNLN 236
T L+ L +S C +TD+G+A+L L L L L C +T L L+ L +L L+L+
Sbjct: 126 TALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTALQTLDLS 185
Query: 237 RCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 293
C+ L D G + + +L+ L L + +++TD L HLK L L+ L+L C + D GL
Sbjct: 186 YCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAHLKPLAALQHLDLSHCRSLTDAGL 245
Query: 294 VNLTGLTNLESINLSF 309
L S+NL
Sbjct: 246 ARFKILAT--SLNLEI 259
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 349 GLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQN 406
L +L+L G +++T++G A+L K L+ L + LTDAG+ H+ L++L L LS
Sbjct: 2 ALKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYC 61
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 461
NLTD L ++ LT L L ++N + +T GL HL PL +L+ L L +C +D
Sbjct: 62 ENLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDD 117
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++DLS ++ D+GL HL + LQ+L +C +++D GL HL+ L+ L L
Sbjct: 177 TALQTLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAHLKPLAALQHLDLSH 236
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
++T G+ F L + L++ R
Sbjct: 237 CRSLTDAGLARFKILATSLNLEIVR 261
>gi|46447466|ref|YP_008831.1| hypothetical protein pc1832 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401107|emb|CAF24556.1| hypothetical protein pc1832 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 456
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Query: 302 LESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA- 358
+E++N S ++D L L +LK L+L + TD GLA LT LT L HLDL G
Sbjct: 225 IEALNFSNNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCF 284
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
R+TD+G A+L L+ L + G LTDAG+ H+K L +L L+L + NLTD L +
Sbjct: 285 RVTDTGLAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLR 344
Query: 419 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 467
L L LN++N IT GL HL PL L+ L L C K+T N + RL+S
Sbjct: 345 PLVALQHLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRS 395
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 4/223 (1%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +D+TD+ L+ LK+C NL+ LD C +D GL HL L+ L L +T G+
Sbjct: 232 NNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCFRVTDTGL 291
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+ L+ L L+L C GLV+LK L+ L+ L++ C +TD+ + L L L+
Sbjct: 292 AHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQH 351
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLS 241
L ++ C +TD G+A+L L L L+L C +T L L +L +L +LNL+ C L+
Sbjct: 352 LNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLT 411
Query: 242 DDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNL 283
D G + +L+ L+L E+TD L H K L L+L
Sbjct: 412 DAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 114/212 (53%), Gaps = 10/212 (4%)
Query: 252 GSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF 309
++ LN N ++TD L+ LK NL+ L+L C D GL +LT LT L+ ++L
Sbjct: 223 NEIEALNFSNNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDL-- 280
Query: 310 TG---ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGA 365
TG ++D L L+ L +L+ LNL +TD GL L L L HLDL +TD+G
Sbjct: 281 TGCFRVTDTGLAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGL 340
Query: 366 AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
A+LR L+ L + +TD G+ H+ L +L L+L Q LT L + L L
Sbjct: 341 AHLRPLVALQHLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQ 400
Query: 425 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
LN+S S +T AGL HL+PL L+ L L +C
Sbjct: 401 HLNLSGCSYLTDAGLAHLRPLVALQHLDLANC 432
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L G D+TD+GL+HLK L+ LD C ++D GL HLR L L L+
Sbjct: 299 ALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQHLNLTNCE 358
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT G+ L+ L LDL +C ++ G GL L+ L+ L+ LN+ C+ +TD+ + L
Sbjct: 359 NITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLTDAGLAHL 418
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL 211
L L+ L ++ C ++TD+G+A+ K L T L+L
Sbjct: 419 RPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 115/219 (52%), Gaps = 6/219 (2%)
Query: 216 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 273
+T A L +L +L L+L C +D G + + +L+ L+L G +TD L HL
Sbjct: 236 LTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCFRVTDTGLAHLS 295
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL- 331
L L+ LNL C + D GLV+L L L+ ++L ++D L L L +L+ LNL
Sbjct: 296 PLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQHLNLT 355
Query: 332 DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGV 389
+ ITD GLA LT L L HLDL ++T +G A LR+ L+ L + G LTDAG+
Sbjct: 356 NCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLTDAGL 415
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
H++ L +L L+L+ LTD L L L++
Sbjct: 416 AHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+L ++LSG S +TD+GL HL+ LQ LD C +++D GL H + L+ T L R
Sbjct: 398 ALQHLNLSGCSYLTDAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDLR 455
>gi|116621127|ref|YP_823283.1| hypothetical protein Acid_2008 [Candidatus Solibacter usitatus
Ellin6076]
gi|116224289|gb|ABJ82998.1| hypothetical protein Acid_2008 [Candidatus Solibacter usitatus
Ellin6076]
Length = 248
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 117/226 (51%), Gaps = 19/226 (8%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTG 298
+++D E S++ L + LG + D LVHL+ L LE LNL G+ GD L G
Sbjct: 38 ITNDRLEPVSRMTWLTGVGLGEVPVDDGVLVHLQPLRELECLNLAYTGVTGD--FTRLLG 95
Query: 299 LTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
T L + L TG D R LA +L+ + + +TD GLAA+ +L +
Sbjct: 96 -TPLRDVRLEGCRRTG--DACARSLARFPTLRQVEMHMTGLTDDGLAAMAALP--LEVLW 150
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
G RITD G + F NLR L+IC +TD GV+ + L L +L L+++ ++D ++E
Sbjct: 151 LGPRITDRGMETIGGFANLRHLDICTHLITDEGVRALAGLQQLQVLWLTRS-RVSDASIE 209
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
++S TGL LNV+ + IT+ GL LK L L C++ D
Sbjct: 210 VLSQFTGLRELNVNYTEITAQGLARLK-------LALPECRLVEPD 248
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 26/211 (12%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL----- 211
LE L I W IT+ ++P+S +T L + + V D + +L+ L++L LNL
Sbjct: 28 LEELVI-WGGAITNDRLEPVSRMTWLTGVGLGEVPVDDGVLVHLQPLRELECLNLAYTGV 86
Query: 212 -----------------EGCPVTA-ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
EGC T AC SL+ +L + ++ L+DDG + +
Sbjct: 87 TGDFTRLLGTPLRDVRLEGCRRTGDACARSLARFPTLRQVEMHMTGLTDDGLAAMAAL-P 145
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
L+VL LG ITD + + G NL L++ + I DEG+ L GL L+ + L+ + +S
Sbjct: 146 LEVLWLG-PRITDRGMETIGGFANLRHLDICTHLITDEGVRALAGLQQLQVLWLTRSRVS 204
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
D S+ L+ + L+ LN++ +IT GLA L
Sbjct: 205 DASIEVLSQFTGLRELNVNYTEITAQGLARL 235
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 16/229 (6%)
Query: 24 SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
LE+ RD L++L + ND+ V S+ + L V L V D L+HL+ L
Sbjct: 21 KLESRRD--LEELVIWGGAITNDRLEPV--SRMTWLTGVGLGEVPVDDGVLVHLQPLREL 76
Query: 84 QSLDFNFCIQISDGGLEHLRG--LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
+ L+ + D L G L ++ RR A+ + F L ++++
Sbjct: 77 ECLNLAYTGVTGD--FTRLLGTPLRDVRLEGCRRTGDACARSLARFP---TLRQVEMHMT 131
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
GL + L L + W ITD M+ + G NL+ L I +TD G+ L
Sbjct: 132 GLTDDGLAAMAAL----PLEVLWLGPRITDRGMETIGGFANLRHLDICTHLITDEGVRAL 187
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
GLQ+L +L L V+ A ++ LS L LN+N +++ G +
Sbjct: 188 AGLQQLQVLWLTRSRVSDASIEVLSQFTGLRELNVNYTEITAQGLARLK 236
>gi|300704275|ref|YP_003745878.1| leucine-rich-repeat type III effector protein (gala6) [Ralstonia
solanacearum CFBP2957]
gi|299071939|emb|CBJ43268.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum CFBP2957]
Length = 519
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 143/477 (29%), Positives = 210/477 (44%), Gaps = 61/477 (12%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVN------DKWMDVIASQGS 57
R++++++ N SR + V+ RD A+ LG+YP + + ++ + +
Sbjct: 2 REVNRELRN---ASRAV--VTHLTIRDPAMF-AHLGKYPALTSVRFKGELTLEALKALPP 55
Query: 58 SLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ +D+S G V+++GL HL L+SL N I+I G L ++LTSLS
Sbjct: 56 GVEHLDISRCTGRGVSNAGLAHLA-TRPLKSLSLN-GIEIDAEGARLLATCASLTSLSLT 113
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKWCN 166
+I + A A ++ LDL VN+ G L SLN+ N
Sbjct: 114 -GCSIGDRAATALAQSRSIASLDLS---------VNMIGPDGARALASAPLVSLNLH-NN 162
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
I D L+ LKSL S + + D+G+ LT LNL G + A +L
Sbjct: 163 GIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRR 222
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVH------------ 271
SL L+L+ +L D G + + SL LN+ NEI D E L
Sbjct: 223 NTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVRSNEIGDDGTEALARNTTLKSLNLSYN 282
Query: 272 ---------LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
L G T L L+L C I G L T+L S++L I D R LA
Sbjct: 283 PIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALAT 342
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+L L+L I D G AL LT L+L+G + D GAA L L SL +
Sbjct: 343 SRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLGRN 402
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+ G +H+ ++LT L+LS+N L + E +S T L +LNVS++ I AG R
Sbjct: 403 RIGPNGAQHLAKSATLTELDLSEN-RLGPEGAEALSLSTVLTTLNVSDNAIGEAGAR 458
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 159/402 (39%), Gaps = 46/402 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE-----------HLRGL 105
+SL S+ L+G + D L ++ SLD + + DG H G+
Sbjct: 105 ASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIGPDGARALASAPLVSLNLHNNGI 164
Query: 106 SNLTSLSFR----------RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
+ +L+ NN I G+ FA L +L+L G L+
Sbjct: 165 GDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNT 224
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L L++ N + D+ + L+G +L SL + +++ D G L L LNL P
Sbjct: 225 SLTELDLS-TNRLGDAGAQALAGSRSLTSLNVRSNEIGDDGTEALARNTTLKSLNLSYNP 283
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ +L +L L+L C + G ++ SL L+LG N
Sbjct: 284 IGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNR------------ 331
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
IGD+G L L ++LS I D + LAG SL SLNL +
Sbjct: 332 ------------IGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNE 379
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+ D G AAL LT L+L RI +GA +L L L++ L G + +
Sbjct: 380 VDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRLGPEGAEALSLS 439
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
+ LT LN+S N T L SL+ N+R+ AG
Sbjct: 440 TVLTTLNVSDNAIGEAGARAFAEKSTSLTSLDARNNRMGEAG 481
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 132/309 (42%), Gaps = 39/309 (12%)
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
V KG + LE+L + P G+ +L + + V+++G+A+L + L
Sbjct: 39 VRFKGELTLEALKA----------LPP--GVEHLDISRCTGRGVSNAGLAHLA-TRPLKS 85
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L+L G + A L+ SL L+L C + D ++ S+ L+L N I +
Sbjct: 86 LSLNGIEIDAEGARLLATCASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIGPDG 145
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L L SLNL + GIGDEG + L L+S+N S GI D + A + L
Sbjct: 146 ARALASAP-LVSLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQ 204
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
LNL I G AL T LT LDL R+ D+GA L ++L SL + + D G
Sbjct: 205 LNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVRSNEIGDDG 264
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
+ + ++L LNLS N G G +L S + LR
Sbjct: 265 TEALARNTTLKSLNLSYNP----------IGFWGAGALGGSTT---------------LR 299
Query: 449 SLTLESCKV 457
L L C +
Sbjct: 300 ELDLRCCAI 308
>gi|168701211|ref|ZP_02733488.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 702
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 117/431 (27%), Positives = 190/431 (44%), Gaps = 36/431 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L S+ L + VTD+G+ HL L++LD + ++++D GL+ L GL NL +L+
Sbjct: 218 PKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSR-LRVTDAGLKELAGLKNLRALTLLFT 276
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI--KW-CNCITDSDM 173
+T G++ FAG L L L + ++ L +L + +W + +
Sbjct: 277 Q-VTGAGLRPFAG-AGLTHLALSGSKVKAADVADVVACRALAALAVEGRWPADAVAQ--- 331
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+GL L+SL + +A L G KL ++L VT L L G L +
Sbjct: 332 --LAGLPELRSLHFQSDLLDGKVLAELSGASKLEAVHL--ATVTDDALAGLRRAGKLHTI 387
Query: 234 NLNRCQLSDDGCEKFSKIGSLKV--LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
R E+ G +V L+L +T L L NL++L L + +
Sbjct: 388 PQARA-------ERGRPAGPDEVVHLDLSGQPVTGAGLKELTVFRNLDTLVLRNTRVAG- 439
Query: 292 GLVNLTGLTNLESINLSFTG-----ISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALT 345
G+ L L L ++ L G ++ +R+LA L +L+ L+L + G+A A+
Sbjct: 440 GIGALADLRKLSALTLPLYGGDDRAVTPAEMRRLAALDTLEELHLHG--VLVPGMARAVA 497
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
S+ LT L D+ K+LR+L G G+TD G + + L ++LS
Sbjct: 498 SIPNLTTLS---GTFQDTDLREFPALKHLRALMTGGAGITDEGAWDVARMKRLECVSLSD 554
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
LTD ++ L L L +S + +T G++ L +K LR+L L KV + L
Sbjct: 555 TRRLTDAGARDLAALPNLKHLCLSRTGVTDEGVQVLAGVKTLRTLWLSEIKVGPAGVAAL 614
Query: 466 QSRDLPNLVSF 476
P LV+
Sbjct: 615 GRH--PGLVAL 623
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 117/266 (43%), Gaps = 29/266 (10%)
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L +L+L+ ++ DD + + LK L L ++TD + HL + LE+L+L +
Sbjct: 196 LTHLDLSFSRVGDDDLKLLAAFPKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSRLRVT 255
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
D GL L GL NL ++ L FT ++ LR AG + L L L ++ +A + +
Sbjct: 256 DAGLKELAGLKNLRALTLLFTQVTGAGLRPFAG-AGLTHLALSGSKVKAADVADVVACRA 314
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
L L + G R A L LRSL L D V + +LS + L +
Sbjct: 315 LAALAVEG-RWPADAVAQLAGLPELRSLHFQ-SDLLDGKV--LAELSGASKLEAVHLATV 370
Query: 410 TDKTLELI-------------------SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TD L + +G +V L++S +T AGL+ L +NL +L
Sbjct: 371 TDDALAGLRRAGKLHTIPQARAERGRPAGPDEVVHLDLSGQPVTGAGLKELTVFRNLDTL 430
Query: 451 TLESCKVTAN-----DIKRLQSRDLP 471
L + +V D+++L + LP
Sbjct: 431 VLRNTRVAGGIGALADLRKLSALTLP 456
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 135/310 (43%), Gaps = 43/310 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S S L +V L+ VTD L L+ L ++ + G + + L LS
Sbjct: 357 SGASKLEAVHLA--TVTDDALAGLRRAGKLHTIPQARAERGRPAGPDEVVHLD----LS- 409
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC----NCIT 169
+T G+K NL L L R TR+ GG+ L L KL +L + +T
Sbjct: 410 --GQPVTGAGLKELTVFRNLDTLVL-RNTRVAGGIGALADLRKLSALTLPLYGGDDRAVT 466
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
++M+ L+ L L+ L +L G+ + G A + +L+ L
Sbjct: 467 PAEMRRLAALDTLEEL-------------HLHGVL------VPGMARAVASIPNLTTLSG 507
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGI 288
F D +F + L+ L G ITDE + + LE ++L D+ +
Sbjct: 508 TF---------QDTDLREFPALKHLRALMTGGAGITDEGAWDVARMKRLECVSLSDTRRL 558
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
D G +L L NL+ + LS TG++D ++ LAG+ +L++L L ++ G+AAL
Sbjct: 559 TDAGARDLAALPNLKHLCLSRTGVTDEGVQVLAGVKTLRTLWLSEIKVGPAGVAALGRHP 618
Query: 349 GLTHLDLFGA 358
GL LDL GA
Sbjct: 619 GLVALDLSGA 628
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 18/281 (6%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLT-SLSFRR 115
++ +DLSG VT +GL L NL +L N + G L LR LS LT L
Sbjct: 402 EVVHLDLSGQPVTGAGLKELTVFRNLDTLVLRNTRVAGGIGALADLRKLSALTLPLYGGD 461
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDM 173
+ A+T M+ A L L +L L HG LV + + + +L D+D+
Sbjct: 462 DRAVTPAEMRRLAALDTLEELHL------HGVLVPGMARAVASIPNLTT-LSGTFQDTDL 514
Query: 174 KPLSGLTNLKSLQISCSKVTDSG---IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ L +L++L + +TD G +A +K L+ ++L + +T A L+AL +L
Sbjct: 515 REFPALKHLRALMTGGAGITDEGAWDVARMKRLECVSLSDTRR--LTDAGARDLAALPNL 572
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
+L L+R ++D+G + + + +L+ L L ++ + L L +L+L G+
Sbjct: 573 KHLCLSRTGVTDEGVQVLAGVKTLRTLWLSEIKVGPAGVAALGRHPGLVALDLSGAPRGE 632
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L G+T LE +NL+ + +L LA L L+ L+L
Sbjct: 633 A--EPLAGITTLEYLNLAGALTGERTLAALAKLPHLRVLHL 671
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
GLT+L +LSF+ + D L+ LA LKSL L+ Q+TD G+ L ++ GL LDL
Sbjct: 195 GLTHL---DLSFSRVGDDDLKLLAAFPKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSR 251
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
R+TD+G L KNLR+L + +T AG++ + LT L LS + +++
Sbjct: 252 LRVTDAGLKELAGLKNLRALTLLFTQVTGAGLRPFAG-AGLTHLALSGSKVKAADVADVV 310
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
+ L +L V R + + L L LRSL +S
Sbjct: 311 A-CRALAALAV-EGRWPADAVAQLAGLPELRSLHFQS 345
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 32/182 (17%)
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGS-----LRKLAGLSSLKSLNLDARQITDTGL 341
G+G E L LT L + + F + G L ++A + ++ + L + + T L
Sbjct: 130 GLGGEHL--LTALRAVAPTDRPFGLLIGGESNEFELAEIAKIDNVTYIGLSSSRDTGAKL 187
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
AL + GLTHLDL +R+ D L F L+SL + +TDAG+KH+
Sbjct: 188 RALAAAKGLTHLDLSFSRVGDDDLKLLAAFPKLKSLRLERTQVTDAGMKHL--------- 238
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+ + GL +L++S R+T AGL+ L LKNLR+LTL +VT
Sbjct: 239 ----------------AAVEGLEALDLSRLRVTDAGLKELAGLKNLRALTLLFTQVTGAG 282
Query: 462 IK 463
++
Sbjct: 283 LR 284
>gi|290977840|ref|XP_002671645.1| member of the leucine-rich repeat protein family [Naegleria
gruberi]
gi|284085215|gb|EFC38901.1| member of the leucine-rich repeat protein family [Naegleria
gruberi]
Length = 392
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 135/254 (53%), Gaps = 4/254 (1%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L L + + + D G++Y+ L KLT LN+ +++ LS + L YL+++ ++
Sbjct: 109 LVDLDMKMNNIGDIGVSYISNLTKLTKLNVSYNRISSEGAKYLSKMKQLTYLDISHNKIG 168
Query: 242 DDGCEKF--SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+DG KF + I L LN+ +NEI + + L L SLN+ IGD+G+ +L +
Sbjct: 169 EDGS-KFICNGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVGGNRIGDQGIEHLMRM 227
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
L +N+S I + ++ ++ L +LN+ I D G ++ + L LD+
Sbjct: 228 HQLVDLNISNNNIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYISEMKQLIKLDIGKNY 287
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
+++ GA Y+ K L +L+I + + G + I ++ LT LNL+ N +TD+ ++ + G
Sbjct: 288 LSNRGAKYISEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLNGNY-ITDEGIKHLCG 346
Query: 420 LTGLVSLNVSNSRI 433
L LVSL++ N+ I
Sbjct: 347 LYQLVSLSIYNTGI 360
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 120/241 (49%), Gaps = 4/241 (1%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL- 224
N I D + +S LT L L +S ++++ G YL +++LT L++ + +
Sbjct: 117 NNIGDIGVSYISNLTKLTKLNVSYNRISSEGAKYLSKMKQLTYLDISHNKIGEDGSKFIC 176
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+ + L +LN+ ++ G + + L LN+G N I D+ + HL + L LN+
Sbjct: 177 NGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVGGNRIGDQGIEHLMRMHQLVDLNIS 236
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ I EG ++ +T L ++N+ I D + ++ + L L++ +++ G +
Sbjct: 237 NNNIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYISEMKQLIKLDIGKNYLSNRGAKYI 296
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH---IKDLSSLTLL 401
+ + LT+LD+ I + GA ++ K L +L + G +TD G+KH + L SL++
Sbjct: 297 SEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLNGNYITDEGIKHLCGLYQLVSLSIY 356
Query: 402 N 402
N
Sbjct: 357 N 357
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 127/262 (48%), Gaps = 5/262 (1%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNL 151
I D G+ ++ L+ LT L+ N I+++G K + + L LD+ +I G
Sbjct: 119 IGDIGVSYISNLTKLTKLNVSYN-RISSEGAKYLSKMKQLTYLDISH-NKIGEDGSKFIC 176
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
G+ +L LNI + N I +K + L L SL + +++ D GI +L + +L LN+
Sbjct: 177 NGIRQLTHLNI-YYNEIGVRGVKFIGALKQLTSLNVGGNRIGDQGIEHLMRMHQLVDLNI 235
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+ +S + L LN+ + + DDG + S++ L L++G N +++ +
Sbjct: 236 SNNNIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYISEMKQLIKLDIGKNYLSNRGAKY 295
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+ + L +L++ S I +EG + + L ++NL+ I+D ++ L GL L SL++
Sbjct: 296 ISEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLNGNYITDEGIKHLCGLYQLVSLSI 355
Query: 332 DARQITDTGLAALTSLTGLTHL 353
I A L S T HL
Sbjct: 356 YNTGIQMEDGAKLLSETMNHHL 377
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
L LD+ I D G +Y+ N L L + ++ G K++ + LT L++S N
Sbjct: 109 LVDLDMKMNNIGDIGVSYISNLTKLTKLNVSYNRISSEGAKYLSKMKQLTYLDISHNKIG 168
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
D + + +G+ L LN+ + I G++ + LK L SL + ++ I+ L
Sbjct: 169 EDGSKFICNGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVGGNRIGDQGIEHL 224
>gi|115689700|ref|XP_783241.2| PREDICTED: F-box/LRR-repeat protein 13-like [Strongylocentrotus
purpuratus]
Length = 871
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 137/478 (28%), Positives = 225/478 (47%), Gaps = 56/478 (11%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
LT+ S +A C LQDL + + PG+ND M +A S LL +++S +++TD+ L L
Sbjct: 312 LTKPSFKAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSVLLYLNISFTNITDATLRLLA 371
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
+ CSNLQ L +C + SD GL++L RG L L IT G K + G L
Sbjct: 372 RCCSNLQYLSLAYCKRFSDKGLQYLGTGRGGRRLVHLDLSGCPQITVNGYKNISGGCPKL 431
Query: 134 VKLDLERCTRIHGGLV--------NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L + C + ++ N++ + L + N ITD +K L+ L+ +
Sbjct: 432 QHLIINDCYTLRDDMIVAVAANCHNIRCISFLYTPN------ITDVALKALAVHRKLQQI 485
Query: 186 QISCS-KVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLS 241
+I + K+TD+ L + L + + CP +T A L SL+ ++ LN+ C ++S
Sbjct: 486 RIEGNCKITDASFKLLGRYCVDLRHIYVSDCPRITDAALKSLATCRNINVLNVADCIRIS 545
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GL 299
D+G LV L +NL +C + D ++ +T
Sbjct: 546 DNGVRN---------------------LVEGPSGPKLREMNLTNCVRVTDVSIMKITQKC 584
Query: 300 TNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+L + F+ I+D L + +L SL++ ITDTGL AL + L + L
Sbjct: 585 YSLVYGSFCFSEHITDAGAEMLGNMPALSSLDISGCNITDTGLGALGNCYHLRDVVLSEC 644
Query: 359 -RITDSG-AAYLRNFKNLRSLEICGG-GLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTL 414
+ITD G + + ++L L+I LTD +K++ L+ LN++ L+D ++
Sbjct: 645 HQITDLGIQKFAQQCRDLDRLDISHCLQLTDQAIKNLAFCCRKLSFLNIAGCSQLSDMSI 704
Query: 415 ELISGLTG-LVSLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCK-VTANDIKRLQSR 468
ISG+ L SLN S +++ +R L K LK LR+L + C +T I +L ++
Sbjct: 705 RYISGVCHYLQSLNFSGCIKVSDDSMRFLRKGLKRLRNLNMLYCHLITKPTIVKLSAK 762
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 166/362 (45%), Gaps = 48/362 (13%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVT 217
LNIK C+ +T K + NL+ L +S C + D + Y+ +G L LN+ +T
Sbjct: 304 LNIKGCSMLTKPSFKAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSVLLYLNISFTNIT 363
Query: 218 AACLDSLSALGS-LFYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNL---GFNEITDECLVH 271
A L L+ S L YL+L C+ SD G + + G ++++L G +IT +
Sbjct: 364 DATLRLLARCCSNLQYLSLAYCKRFSDKGLQYLGTGRGGRRLVHLDLSGCPQITVNGYKN 423
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTG-LTNLESINLSFT-GISDGSLRKLAGLSSLK 327
+ G L+ L ++ C + D+ +V + N+ I+ +T I+D +L+ LA L+
Sbjct: 424 ISGGCPKLQHLIINDCYTLRDDMIVAVAANCHNIRCISFLYTPNITDVALKALAVHRKLQ 483
Query: 328 SLNLDAR-QITDTGLAALTSL-TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGG-G 383
+ ++ +ITD L L H+ + RITD+ L +N+ L +
Sbjct: 484 QIRIEGNCKITDASFKLLGRYCVDLRHIYVSDCPRITDAALKSLATCRNINVLNVADCIR 543
Query: 384 LTDAGVKHIKD-----------------LSSLTLLNLSQNC------------NLTDKTL 414
++D GV+++ + ++ ++++ ++Q C ++TD
Sbjct: 544 ISDNGVRNLVEGPSGPKLREMNLTNCVRVTDVSIMKITQKCYSLVYGSFCFSEHITDAGA 603
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL--QSRDLP 471
E++ + L SL++S IT GL L +LR + L C ++T I++ Q RDL
Sbjct: 604 EMLGNMPALSSLDISGCNITDTGLGALGNCYHLRDVVLSECHQITDLGIQKFAQQCRDLD 663
Query: 472 NL 473
L
Sbjct: 664 RL 665
>gi|168030611|ref|XP_001767816.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680898|gb|EDQ67330.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 628
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 133/439 (30%), Positives = 211/439 (48%), Gaps = 54/439 (12%)
Query: 20 LTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+ L + C L+ L L G+ D + +A L +DLS ++V+D GL L
Sbjct: 147 VTDSGLSSLSRCKGLRILGLKYCSGLGDFGIQNVAIGCQRLYIIDLSFTEVSDKGLASLA 206
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKL 136
+L+ L CI ++D GL LR G +L L+ + +++QG+ G + L +L
Sbjct: 207 LLKHLECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLNVSSQGIIELTGSSVQLQEL 266
Query: 137 DLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVT 193
+L C I L + + L L+ + + C I DS++ + SG LK L +S C VT
Sbjct: 267 NLSYCKLISNVLFASFQKLKTLQVVKLDGCV-IGDSNLSLIGSGCIELKELSLSKCQGVT 325
Query: 194 DSGIAYL----KGLQKLTL-----------------------LNLEGCPVTAACLDSLSA 226
D+G+ + GLQKL L L +E C + A + L
Sbjct: 326 DAGVVGVVTSCTGLQKLDLTCCRDITDTALKAVATSCTGLLSLRMENCLLVTA--EGLIM 383
Query: 227 LG-SLFY---LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLES 280
+G S Y L+L C L+D+G + + L++L +G+ +IT L + TNL
Sbjct: 384 IGKSCVYLEELDLTDCNLNDNGLKSIGRCRGLRLLKVGYCMDITYAGLASIGATCTNLRE 443
Query: 281 LN-LDSCGIGDEGLVNL-TGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 336
L+ S GI DEG+ + +G L+ +NLS+ + I+D SL LA LS L L L A QI
Sbjct: 444 LDCYRSVGISDEGVAAIASGCKRLKVVNLSYCSSITDASLHSLALLSDLVQLELRACSQI 503
Query: 337 TDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIK 393
T G++ + S L LD+ + + D G L R +NLR + + +TDAG+ I
Sbjct: 504 TSAGISYIGASCKHLRELDVKRCKFVGDHGVLALSRGCRNLRQVNLSYTAVTDAGMMAIA 563
Query: 394 DLS-----SLTLLNLSQNC 407
++S L +N++ +C
Sbjct: 564 NMSCIQDMKLVHVNVTSSC 582
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 192/403 (47%), Gaps = 60/403 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L+ ++ LD + C++++D + L ++ TS AI +G AG +LV+
Sbjct: 53 LRRYPQIECLDLSSCVEVTD---QCLAAVAKFTSSRLISIKAIRTKGF-TIAGFRSLVEC 108
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDS 195
L+ +++ +C + D+++ LS L +L+ L++ SC VTDS
Sbjct: 109 RF------------------LQDVDVTFCTQVGDAEVIALSELRHLQKLKLDSCRDVTDS 150
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G++ L + L +L L+ C S LG N+ GC++ L
Sbjct: 151 GLSSLSRCKGLRILGLKYC----------SGLGDFGIQNVA------IGCQR------LY 188
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL-TGLTNLESINLSFT-GI 312
+++L F E++D+ L L L +LE L+L SC + D+GL L G +L+ +N++ +
Sbjct: 189 IIDLSFTEVSDKGLASLALLKHLECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLNV 248
Query: 313 SDGSLRKLAGLS-SLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
S + +L G S L+ LNL + I++ A+ L L + L G I DS + + +
Sbjct: 249 SSQGIIELTGSSVQLQELNLSYCKLISNVLFASFQKLKTLQVVKLDGCVIGDSNLSLIGS 308
Query: 371 ----FKNLRSLEICGGGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLV 424
K L SL C G+TDAGV + + L L+L+ ++TD L+ ++ TGL+
Sbjct: 309 GCIELKEL-SLSKC-QGVTDAGVVGVVTSCTGLQKLDLTCCRDITDTALKAVATSCTGLL 366
Query: 425 SLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
SL + N +T+ GL + K L L L C + N +K +
Sbjct: 367 SLRMENCLLVTAEGLIMIGKSCVYLEELDLTDCNLNDNGLKSI 409
>gi|290976088|ref|XP_002670773.1| predicted protein [Naegleria gruberi]
gi|284084335|gb|EFC38029.1| predicted protein [Naegleria gruberi]
Length = 681
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 130/250 (52%), Gaps = 1/250 (0%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L L++ +C I+D ++ +S + LK L +S ++ + + +K +++LT+L++ +
Sbjct: 415 LRRLHVVFCK-ISDREISVISQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTKL 473
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
++ +S + +L L +N L G E +++ L+ L +G N I DE + + +
Sbjct: 474 KCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHMK 533
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
NL L++ S GIG+EG +++ L L IN+ F I + L L +L ++ +I
Sbjct: 534 NLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELEQLTTLLINNCEI 593
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TG ++ + +T LD+ I D GA Y+ + L L + +TD G+K I +
Sbjct: 594 GPTGAKFISKMQRVTELDISLNDIQDEGAHYISELEKLSILYVNNNEITDEGLKAITQMK 653
Query: 397 SLTLLNLSQN 406
+L LL++S N
Sbjct: 654 NLQLLDVSGN 663
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 130/276 (47%), Gaps = 4/276 (1%)
Query: 186 QISCSKVTDSGIAYLKGL---QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
Q V DS K + + L L++ C ++ + +S + L LN++ + S
Sbjct: 392 QTKSFSVVDSAFDRSKSIARCEHLRRLHVVFCKISDREISVISQMKQLKELNVSGNRFSF 451
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNL 302
+ K + L +L++ + ++ + + G+ NL SL ++ +G +G + L L
Sbjct: 452 ESVCKIKDMKQLTILDMSYTKLKCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQL 511
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
+ + I D + ++ + +L L++ + I + G +++ L GLT +++ I
Sbjct: 512 RELFIGSNNIGDEGMYSISHMKNLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQ 571
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
GA + + L +L I + G K I + +T L++S N ++ D+ IS L
Sbjct: 572 QGAESIGELEQLTTLLINNCEIGPTGAKFISKMQRVTELDISLN-DIQDEGAHYISELEK 630
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L L V+N+ IT GL+ + +KNL+ L + K++
Sbjct: 631 LSILYVNNNEITDEGLKAITQMKNLQLLDVSGNKIS 666
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 12/252 (4%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF----CIQISDGGL 99
++D+ + VI SQ L +++SG+ + + +KD L LD ++ C+ +
Sbjct: 425 ISDREISVI-SQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTKLKCLDV----- 478
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E + G+ NLTSL +N + QG + A L L +L + G+ ++ + L
Sbjct: 479 EVVSGMRNLTSLRIN-DNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHMKNLTK 537
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++ N I + +S L L + + + + G + L++LT L + C +
Sbjct: 538 LDVS-SNGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELEQLTTLLINNCEIGPT 596
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+S + + L+++ + D+G S++ L +L + NEITDE L + + NL+
Sbjct: 597 GAKFISKMQRVTELDISLNDIQDEGAHYISELEKLSILYVNNNEITDEGLKAITQMKNLQ 656
Query: 280 SLNLDSCGIGDE 291
L++ I DE
Sbjct: 657 LLDVSGNKISDE 668
>gi|421897032|ref|ZP_16327415.1| type III effector gala6 protein [Ralstonia solanacearum MolK2]
gi|206588197|emb|CAQ18765.1| type III effector gala6 protein [Ralstonia solanacearum MolK2]
Length = 625
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 144/479 (30%), Positives = 207/479 (43%), Gaps = 59/479 (12%)
Query: 3 PRDISQQIFNELV-YSRCLTEVSLEAFRDCALQDLCLGQYPGVN------DKWMDVIASQ 55
PR +++ EL SR + V+ RD A+ LG+YP + + ++ + +
Sbjct: 103 PRRAMREVNRELRNASRAV--VTHLTIRDPAMF-AHLGKYPALTSVRFKGELTLEALKAL 159
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
+ +D+S G V+++GL HL L+SL N I+I G L ++LTSLS
Sbjct: 160 PPGVEHLDISRCTGRGVSNAGLAHLA-TRPLKSLSLN-GIEIDAEGARLLATCASLTSLS 217
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKW 164
+I + A A ++ LDL VN+ G L SLN+
Sbjct: 218 LT-GCSIGDRAATALAQSRSIASLDLS---------VNMIGPDGARALASAPLLSLNLH- 266
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I D L+ LKSL S + + D+G+ LT LNL G + A +L
Sbjct: 267 NNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARAL 326
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVH---------- 271
SL L+L+ +L D G + + SL LNL NEI D E L
Sbjct: 327 RRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLS 386
Query: 272 -----------LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
L G T L L+L C I G L T+L S++L I D R L
Sbjct: 387 YNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARAL 446
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
A +L L+L I D G AL LT L+L+G + D GAA L L SL +
Sbjct: 447 ATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLG 506
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+ G +H+ ++LT L+LS+N + + E +S T L +LNVS + I G R
Sbjct: 507 RNRIGPNGAQHLAKSATLTELDLSEN-RIGPEGAEALSLSTVLTTLNVSGNAIGEKGAR 564
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 106/407 (26%), Positives = 161/407 (39%), Gaps = 46/407 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE-----------HLRGL 105
+SL S+ L+G + D L ++ SLD + + DG H G+
Sbjct: 211 ASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIGPDGARALASAPLLSLNLHNNGI 270
Query: 106 SNLTSLSFR----------RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
+ +L+ NN I G+ FA L +L+L G L+
Sbjct: 271 GDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNT 330
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L L++ N + D+ + L+G +L SL + +++ D G L L LNL P
Sbjct: 331 SLTELDLS-TNRLGDAGAQVLAGSRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLSYNP 389
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ +L +L L+L C + G ++ SL L+LG N
Sbjct: 390 IGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNR------------ 437
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
IGD+G L L ++LS I D + LAG SL SLNL +
Sbjct: 438 ------------IGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNE 485
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+ D G AAL LT L+L RI +GA +L L L++ + G + +
Sbjct: 486 VDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRIGPEGAEALSLS 545
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ LT LN+S N T L SL+ N+R AG + L+
Sbjct: 546 TVLTTLNVSGNAIGEKGARAFAEKSTSLTSLDARNNRRGEAGAKMLE 592
>gi|290996041|ref|XP_002680591.1| predicted protein [Naegleria gruberi]
gi|284094212|gb|EFC47847.1| predicted protein [Naegleria gruberi]
Length = 281
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 131/258 (50%), Gaps = 3/258 (1%)
Query: 143 RIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
RI G L +L L +L+ L+I + + I D ++ +S L L +L I + +++ G YL
Sbjct: 10 RIKEGEALNHLSELKQLKKLHI-YDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYL 68
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
L++LT L ++ + A +S L L L +++ + D+G + S++ L LN+
Sbjct: 69 SELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQ 128
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
N I DE ++ L L L +++ IG+EG L+ L +L +N+S I D + L
Sbjct: 129 DNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYL 188
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
L L L++ I D G+ L+ L LTHLD+ +I D G Y+ K + L I
Sbjct: 189 CELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYIN 248
Query: 381 GGGLTDAGVKHIKDLSSL 398
+ D G K++ +++ L
Sbjct: 249 NNYIGDEGTKYLSEMNQL 266
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 110/235 (46%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ LS L LK L I S + D G+ ++ L++LT L++ ++ LS L L +
Sbjct: 17 LNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYLSELKQLTF 76
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L +++ + G + S++ L +L + N I DE +L L L LN+ IGDEG
Sbjct: 77 LIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQDNRIGDEG 136
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ L L + ++ I + + L+ L L LN+ QI D G L L L
Sbjct: 137 SKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCELKQLMD 196
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
LD+ I D G YL K L L+I + D GVK+I +L + L ++ N
Sbjct: 197 LDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYINNNY 251
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 110/222 (49%), Gaps = 1/222 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L +L +L+I+ N I++ K LS L L L I + + G Y+ L++LT+L ++
Sbjct: 47 LKQLTTLDIR-NNGISEYGAKYLSELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDK 105
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ LS L L YLN+ ++ D+G + ++ L L + N+I +E +L
Sbjct: 106 NNIDDEGAKYLSELKQLTYLNIQDNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLS 165
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L +L LN+ + IGDEG L L L +++S I D ++ L+GL L L++
Sbjct: 166 ELKHLILLNISNNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISY 225
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+I D G+ ++ L + +L + I D G YL L+
Sbjct: 226 NKIRDEGVKYISELKEIMYLYINNNYIGDEGTKYLSEMNQLK 267
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 123/254 (48%), Gaps = 8/254 (3%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
+K L KL + EG L+ LS L L L++ + D+G S++ L L++
Sbjct: 1 MKSLTKLKIRIKEG-----EALNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDI 55
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
N I++ +L L L L +D IG +G ++ L L + + I D +
Sbjct: 56 RNNGISEYGAKYLSELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKY 115
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L+ L L LN+ +I D G + L LT L + +I + GA YL K+L L I
Sbjct: 116 LSELKQLTYLNIQDNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNI 175
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRITSAGL 438
+ D G K++ +L L L++S CN + D+ ++ +SGL L L++S ++I G+
Sbjct: 176 SNNQIGDEGAKYLCELKQLMDLDIS--CNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGV 233
Query: 439 RHLKPLKNLRSLTL 452
+++ LK + L +
Sbjct: 234 KYISELKEIMYLYI 247
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 100/196 (51%), Gaps = 6/196 (3%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
E L HL L L+ L++ IGDEG+ ++ L L ++++ GIS+ + L+ L L
Sbjct: 15 EALNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYLSELKQL 74
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
L +D I G ++ L LT L + I D GA YL K L L I + D
Sbjct: 75 TFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQDNRIGD 134
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G K+I +L LT L ++ N + ++ + +S L L+ LN+SN++I G ++L LK
Sbjct: 135 EGSKYIGELKQLTDLYINNN-QIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCELKQ 193
Query: 447 LRSLTLESCKVTANDI 462
L L + SC NDI
Sbjct: 194 LMDLDI-SC----NDI 204
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 123/267 (46%), Gaps = 3/267 (1%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
L HL + L+ L + I D G+ + L LT+L R NN I+ G K + L
Sbjct: 15 EALNHLSELKQLKKLHI-YDSYIGDEGVRFISELKQLTTLDIR-NNGISEYGAKYLSELK 72
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L L +++ G + L +L L I N I D K LS L L L I ++
Sbjct: 73 QLTFLIIDKNNIGAKGSKYISELKQLTILIID-KNNIDDEGAKYLSELKQLTYLNIQDNR 131
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+ D G Y+ L++LT L + + LS L L LN++ Q+ D+G + ++
Sbjct: 132 IGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCEL 191
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
L L++ N+I DE + +L GL L L++ I DEG+ ++ L + + ++
Sbjct: 192 KQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYINNNY 251
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITD 338
I D + L+ ++ LK N D + D
Sbjct: 252 IGDEGTKYLSEMNQLKDHNKDFQYKED 278
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 3/261 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + + S + D G+ + + L +LD IS+ G ++L L LT L
Sbjct: 21 SELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDIRNN-GISEYGAKYLSELKQLTFLII 79
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+NN I A+G K + L L L +++ G L L +L LNI+ N I D
Sbjct: 80 DKNN-IGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQ-DNRIGDEGS 137
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K + L L L I+ +++ + G YL L+ L LLN+ + L L L L
Sbjct: 138 KYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCELKQLMDL 197
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+++ + D+G + S + L L++ +N+I DE + ++ L + L +++ IGDEG
Sbjct: 198 DISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYINNNYIGDEGT 257
Query: 294 VNLTGLTNLESINLSFTGISD 314
L+ + L+ N F D
Sbjct: 258 KYLSEMNQLKDHNKDFQYKED 278
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 81/174 (46%), Gaps = 2/174 (1%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I D G ++L L LT L+ + +N I +G K L L L + + G L
Sbjct: 108 IDDEGAKYLSELKQLTYLNIQ-DNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSE 166
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L LNI N I D K L L L L ISC+ + D GI YL GL++LT L++
Sbjct: 167 LKHLILLNIS-NNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISY 225
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
+ + +S L + YL +N + D+G + S++ LK N F DE
Sbjct: 226 NKIRDEGVKYISELKEIMYLYINNNYIGDEGTKYLSEMNQLKDHNKDFQYKEDE 279
>gi|325109499|ref|YP_004270567.1| hypothetical protein Plabr_2946 [Planctomyces brasiliensis DSM
5305]
gi|324969767|gb|ADY60545.1| leucine-rich repeat cysteine-containing subtype [Planctomyces
brasiliensis DSM 5305]
Length = 381
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 5/225 (2%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++S + E +K+ L+ L L + D+ L+ + + LE+L+L C + + GL +L G
Sbjct: 85 EVSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENLDLRECPVSNAGLAHLVG 144
Query: 299 LTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L L+++ LS T + DG + +A L LK L LD I+ GL L LT L L
Sbjct: 145 LEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRELY 204
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
L + D L F LR L + L+ G++ I LS L L++S++ +L++
Sbjct: 205 LASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDD 264
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ +S LT L LN+ I+ AG+ HL PL L L L++ +++
Sbjct: 265 ISSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLDNTQLS 309
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 154/311 (49%), Gaps = 32/311 (10%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
++ ++ L+ L L+SL + S D + + +L L+L CPV+ A L L L
Sbjct: 86 VSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENLDLRECPVSNAGLAHLVGL 145
Query: 228 GSLFYLNLN----RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L L L+ + D G E +K+ LKVL L F I+ + L LK LT+L L L
Sbjct: 146 EKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRELYL 205
Query: 284 DSCGIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGL 341
S +GDE L L+ L + +S + +S +++++ LS L+ L++ + +++ +
Sbjct: 206 ASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDDI 265
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
++L+ LT LT L+L+ I+D AGV+H+ L+ LT L
Sbjct: 266 SSLSKLTKLTKLNLWRVPISD------------------------AGVEHLAPLTKLTWL 301
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
NL N L+D L + + L L++ +++I++AGL L LK+L L + V
Sbjct: 302 NLD-NTQLSDAGLSTLKEMKELKFLHLGSTQISNAGLPQLSELKSLDKLVVTRTAVNQEG 360
Query: 462 IKRLQSRDLPN 472
+ +LQ +LP+
Sbjct: 361 VDKLQP-ELPD 370
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 126/282 (44%), Gaps = 31/282 (10%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L S+ D LI + CS L++LD C +S+ GL HL GL L +L +
Sbjct: 100 LRSLLLRESNAGDDALIAVGKCSQLENLDLREC-PVSNAGLAHLVGLEKLKALRLSGQSG 158
Query: 119 ITAQ---GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
T GM++ A L L L L+ GL LK L L L + + D D+K
Sbjct: 159 ATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRELYLA-STLVGDEDLKA 217
Query: 176 LSGLTNLKSLQISC--------------------------SKVTDSGIAYLKGLQKLTLL 209
LS L+ L++S S +++ I+ L L KLT L
Sbjct: 218 LSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDDISSLSKLTKLTKL 277
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
NL P++ A ++ L+ L L +LNL+ QLSD G ++ LK L+LG +I++ L
Sbjct: 278 NLWRVPISDAGVEHLAPLTKLTWLNLDNTQLSDAGLSTLKEMKELKFLHLGSTQISNAGL 337
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
L L +L+ L + + EG+ L I L + G
Sbjct: 338 PQLSELKSLDKLVVTRTAVNQEGVDKLQPELPDTEIQLKYLG 379
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 140/315 (44%), Gaps = 29/315 (9%)
Query: 84 QSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
Q ++ +F ++S LE L L L SL R +NA + A L LDL C
Sbjct: 75 QIIEVDFIGKEVSPEALEALAKLPKLRSLLLRESNA-GDDALIAVGKCSQLENLDLRECP 133
Query: 143 RIHGGLVNLKGLMKLESLNIKW---CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+ GL +L GL KL++L + + D M+ ++ L LK L + ++ G+
Sbjct: 134 VSNAGLAHLVGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQ 193
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLN 258
LK L L L L V L +LS L L +++ QLS G ++ S++ L+ L+
Sbjct: 194 LKPLTDLRELYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELD 253
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
+ + + ++ + +L+ LT L +NL ISD +
Sbjct: 254 VS-----------------------EDSSLSNDDISSLSKLTKLTKLNLWRVPISDAGVE 290
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
LA L+ L LNLD Q++D GL+ L + L L L +I+++G L K+L L
Sbjct: 291 HLAPLTKLTWLNLDNTQLSDAGLSTLKEMKELKFLHLGSTQISNAGLPQLSELKSLDKLV 350
Query: 379 ICGGGLTDAGVKHIK 393
+ + GV ++
Sbjct: 351 VTRTAVNQEGVDKLQ 365
>gi|159486717|ref|XP_001701384.1| hypothetical protein CHLREDRAFT_153692 [Chlamydomonas reinhardtii]
gi|158271686|gb|EDO97500.1| predicted protein [Chlamydomonas reinhardtii]
Length = 293
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 11/162 (6%)
Query: 324 SSLKSLNLDARQI-------TDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKN 373
S+L LNL ++ TD L ++ L+ LT LD+FG R+TD+GAA L +
Sbjct: 116 STLTHLNLTYTKVCVLRGTLTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAPALRG 175
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSR 432
LRSLE CGGG+TDAG + L++LT LNLSQN L D + L + L L L+++++
Sbjct: 176 LRSLECCGGGITDAGALCLARLTALTSLNLSQNPRLGDAGVRSLAAHLAELQVLSLNHTN 235
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
+TSA LR L L LRSL L +V+ + RL++R P+L+
Sbjct: 236 VTSACLRELAQLPWLRSLALAGSRVSEAGVARLKARAHPDLI 277
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
Query: 229 SLFYLNLN-------RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+L +LNL R L+D S++ L L++ +TD L G L L
Sbjct: 117 TLTHLNLTYTKVCVLRGTLTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAPALRGL 176
Query: 282 -NLDSCG--IGDEGLVNLTGLTNLESINLSFTG-ISDGSLRKLAG-LSSLKSLNLDARQI 336
+L+ CG I D G + L LT L S+NLS + D +R LA L+ L+ L+L+ +
Sbjct: 177 RSLECCGGGITDAGALCLARLTALTSLNLSQNPRLGDAGVRSLAAHLAELQVLSLNHTNV 236
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
T L L L L L L G+R++++G A L+
Sbjct: 237 TSACLRELAQLPWLRSLALAGSRVSEAGVARLK 269
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT-LLNLEGCP-----VTAACL 221
+TD+ ++ +S L+ L +L + ++TD+G A L G L L +LE C A CL
Sbjct: 135 LTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAPALRGLRSLECCGGGITDAGALCL 194
Query: 222 DSLSALGSLFYLNLNR-CQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
L+AL S LNL++ +L D G + + L+VL+L +T CL L L L
Sbjct: 195 ARLTALTS---LNLSQNPRLGDAGVRSLAAHLAELQVLSLNHTNVTSACLRELAQLPWLR 251
Query: 280 SLNLDSCGIGDEGLVNL 296
SL L + + G+ L
Sbjct: 252 SLALAGSRVSEAGVARL 268
>gi|317420071|emb|CBN82107.1| Uncharacterized protein [Dicentrarchus labrax]
Length = 889
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 112/410 (27%), Positives = 189/410 (46%), Gaps = 47/410 (11%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDL 64
++++ + N + R L +LE F C LQ L YP ++ + + + ++L + L
Sbjct: 469 ELAELLLNHMSRERLLRPRTLELFFGCPLQKFVLNCYPYSTNELLRQLRA-FTALKHLSL 527
Query: 65 SGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S +TDSGL + LQ L+ C +++D L+H+ GL +L LS + +T G
Sbjct: 528 VNSPLITDSGLSIFSSLAKLQYLNLASCSKLTDSCLQHITGLKSLCFLSLDQTK-VTDAG 586
Query: 124 MKAF--AGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLT 180
M + + L +L L + LV L + +L L+IK D+ L+ L+
Sbjct: 587 MVLYLQSAPSCLSQLSLNQTAVTEASLVVLPTCVPQLRLLSIKQTKV---KDVSALARLS 643
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR--- 237
NL++L + + VT+S + +L L+ L+L G PV D AL + L L +
Sbjct: 644 NLQTLNLDVTGVTESSLEHLSSHPTLSSLSLAGIPVA----DGNQALQIISDLRLTQLTL 699
Query: 238 ----------------------------CQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
Q++D G + S + LK L+L ++TD L
Sbjct: 700 PGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVTDAGL 759
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNL-TGLTNLESINLSFTGISDGSLRK-LAGLSSLK 327
L+GL L+ L LD + G+ +L T L +L+ + L+ T + D +R+ + + L
Sbjct: 760 PSLRGLQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDTVVRRGVIRCNQLV 819
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
LNL +ITD GL L + L ++L G ++ G A L +F N+ S+
Sbjct: 820 KLNLSRTRITDHGLKCLKHM-HLAQVNLDGTGVSLIGIANLLSFTNISSI 868
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 152/304 (50%), Gaps = 42/304 (13%)
Query: 203 LQKLTLLNLEGCPV-----------TAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSK 250
L+ TL GCP+ T L L A +L +L+L N ++D G FS
Sbjct: 484 LRPRTLELFFGCPLQKFVLNCYPYSTNELLRQLRAFTALKHLSLVNSPLITDSGLSIFSS 543
Query: 251 IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL--TGLTNLESINL 307
+ L+ LNL +++TD CL H+ GL +L L+LD + D G+V + + L ++L
Sbjct: 544 LAKLQYLNLASCSKLTDSCLQHITGLKSLCFLSLDQTKVTDAGMVLYLQSAPSCLSQLSL 603
Query: 308 SFTGISDGSL-----------------------RKLAGLSSLKSLNLDARQITDTGLAAL 344
+ T +++ SL LA LS+L++LNLD +T++ L L
Sbjct: 604 NQTAVTEASLVVLPTCVPQLRLLSIKQTKVKDVSALARLSNLQTLNLDVTGVTESSLEHL 663
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIKDLSSLTLL 401
+S L+ L L G + D G L+ +LR ++ G +TD+G+ + LS L L
Sbjct: 664 SSHPTLSSLSLAGIPVAD-GNQALQIISDLRLTQLTLPGRHTVTDSGLSFLSRLSLLLEL 722
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+L+ +TD+ + +S +T L L++SN+++T AGL L+ L+ L+ L L+ VT+
Sbjct: 723 DLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVTDAGLPSLRGLQELQELCLDRTAVTSRG 782
Query: 462 IKRL 465
+ L
Sbjct: 783 VADL 786
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 148/337 (43%), Gaps = 62/337 (18%)
Query: 166 NCI---TDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 220
NC T+ ++ L T LK L + S +TDSG++ L KL LNL C +T +C
Sbjct: 503 NCYPYSTNELLRQLRAFTALKHLSLVNSPLITDSGLSIFSSLAKLQYLNLASCSKLTDSC 562
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNEITDECLVHLKG-LTN 277
L ++ L SL +L+L++ +++D G + S L L+L +T+ LV L +
Sbjct: 563 LQHITGLKSLCFLSLDQTKVTDAGMVLYLQSAPSCLSQLSLNQTAVTEASLVVLPTCVPQ 622
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L++ + D + L L+NL+++NL TG+++ SL L+ +L SL+L +
Sbjct: 623 LRLLSIKQTKVKD--VSALARLSNLQTLNLDVTGVTESSLEHLSSHPTLSSLSLAGIPVA 680
Query: 338 DTGLA-ALTSLTGLTHLDLFG--------------------------ARITDSGAAYLRN 370
D A + S LT L L G ++TD G + L
Sbjct: 681 DGNQALQIISDLRLTQLTLPGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLST 740
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT--------- 421
L+ L + +TDAG+ ++ L L L L + + +LI+ L
Sbjct: 741 MTRLKKLSLSNTQVTDAGLPSLRGLQELQELCLDRTAVTSRGVADLITCLPHLQVLGLAS 800
Query: 422 ----------------GLVSLNVSNSRITSAGLRHLK 442
LV LN+S +RIT GL+ LK
Sbjct: 801 TQVGDTVVRRGVIRCNQLVKLNLSRTRITDHGLKCLK 837
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 118/242 (48%), Gaps = 15/242 (6%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLV 134
L SNLQ+L+ + +++ LEHL L+SLS A G +A + + L
Sbjct: 639 LARLSNLQTLNLD-VTGVTESSLEHLSSHPTLSSLSL--AGIPVADGNQALQIISDLRLT 695
Query: 135 KLDLE-RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L L R T GL L L L L++ +TD + LS +T LK L +S ++VT
Sbjct: 696 QLTLPGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVT 755
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNRCQLSDDGCEK-FSKI 251
D+G+ L+GLQ+L L L+ VT+ D ++ L L L L Q+ D + +
Sbjct: 756 DAGLPSLRGLQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDTVVRRGVIRC 815
Query: 252 GSLKVLNLGFNEITD---ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
L LNL ITD +CL H+ +L +NLD G+ G+ NL TN+ SI S
Sbjct: 816 NQLVKLNLSRTRITDHGLKCLKHM----HLAQVNLDGTGVSLIGIANLLSFTNISSIRAS 871
Query: 309 FT 310
T
Sbjct: 872 NT 873
>gi|344174745|emb|CCA86555.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
syzygii R24]
Length = 468
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 173/371 (46%), Gaps = 5/371 (1%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L+ LD + C I+ G+ HL L L L+ R + I A+G + A L LD+
Sbjct: 74 ASLKELDLSRCRGPITAAGIAHLSRLP-LVRLNVR-DKRIGAEGARRLANHPTLTSLDVS 131
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L KL +L++ N I K L+ L SL IS + + + G
Sbjct: 132 NGRIGPEGARALADNTKLTTLSVS-HNRIGAEGAKALAASKTLTSLDISENGIGNEGACA 190
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L KLT LN+ + +L+A +L L++ + D+G + L LN+
Sbjct: 191 LATNAKLTTLNVNRNQIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNV 250
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
+ + + L L SL +DS IGD G L T+L ++++ GIS +
Sbjct: 251 ERTRVGADGVGALAASKTLTSLRIDSNTIGDAGARALATNTSLTTLHIESNGISPAGAQA 310
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
LA ++L +LNL I D G A ++ T L L + + ++D+GA L K L +L+
Sbjct: 311 LAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRSGLSDAGATTLAASKTLTTLDA 370
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+ DAG + + +LT L++ N + + ++ T L SL++ N+R+T AG+R
Sbjct: 371 GDNTIRDAGARALAANRTLTTLDVRSN-EIENAGARALAANTRLASLDLRNNRVTKAGVR 429
Query: 440 HLKPLKNLRSL 450
L + L SL
Sbjct: 430 ALLANRTLSSL 440
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 161/348 (46%), Gaps = 15/348 (4%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDG--GLEHLRGLSN---LTSLSFRRNNAITAQGMKAF 127
G L + L SLD +S+G G E R L++ LT+LS N I A+G KA
Sbjct: 115 GARRLANHPTLTSLD------VSNGRIGPEGARALADNTKLTTLSVSHNR-IGAEGAKAL 167
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A L LD+ + G L KL +LN+ N I K L+ L SL I
Sbjct: 168 AASKTLTSLDISENGIGNEGACALATNAKLTTLNVNR-NQIGVEGAKALAAGEALTSLDI 226
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ + D G+ L +LT LN+E V A + +L+A +L L ++ + D G
Sbjct: 227 GGNDIGDEGVRALAANARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNTIGDAGARA 286
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
+ SL L++ N I+ L T L +LNL GIGD G + T L S+++
Sbjct: 287 LATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSV 346
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
+G+SD LA +L +L+ I D G AL + LT LD+ I ++GA
Sbjct: 347 RRSGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARA 406
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
L L SL++ +T AGV+ + L++ TL +L + N K +E
Sbjct: 407 LAANTRLASLDLRNNRVTKAGVRAL--LANRTLSSLGVSFNYCSKQIE 452
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 3/230 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ G +L S+D+ G+D+ D G+ L + L +L+ ++ G+ L LTSL
Sbjct: 216 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 274
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I G +A A +L L +E G L L +LN+ + N I D+
Sbjct: 275 -DSNTIGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 332
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ S T L SL + S ++D+G L + LT L+ + A +L+A +L L
Sbjct: 333 QAWSANTTLISLSVRRSGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTL 392
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ ++ + G + L L+L N +T + L L SL +
Sbjct: 393 DVRSNEIENAGARALAANTRLASLDLRNNRVTKAGVRALLANRTLSSLGV 442
>gi|343414367|emb|CCD21012.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1699
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 137/403 (33%), Positives = 217/403 (53%), Gaps = 41/403 (10%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+ SSL ++DLS + +TD + L + S+L++LD + C I+D + L LS+L +L
Sbjct: 861 SELSSLHTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLD 916
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDS 171
IT + + L +L LDL CT G+ ++ L KL SL + +C +
Sbjct: 917 LSHCTGIT--DVSPLSELSSLRTLDLSHCT----GITDVSPLSKLSSLRTLDLSHCTGIT 970
Query: 172 DMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
D+ PLS L++L++L +S C+ +TD ++ L L L L+L C + LS L SL
Sbjct: 971 DVSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHC-TGITDVSPLSELSSL 1027
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GI 288
L+L+ C D S++ SL+ L+L ITD + L L++L +L+L C GI
Sbjct: 1028 RTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGI 1084
Query: 289 GDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS 346
D + L+ L++L +++LS TGI+D S L+ LSSL++L+L ITD ++ L+
Sbjct: 1085 TD--VSPLSELSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSE 1138
Query: 347 LTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 404
L+ L LDL ITD + L +LR+L++ G+TD V + LSSL L LS
Sbjct: 1139 LSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLCTLELS 1194
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
+TD + +S L+ L +L++S+ R G+ + PL L
Sbjct: 1195 HCTGITD--VSPLSELSSLRTLDLSHCR----GITDVSPLSEL 1231
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 148/471 (31%), Positives = 230/471 (48%), Gaps = 84/471 (17%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L + S+L++LD +
Sbjct: 934 SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH 988
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT I +
Sbjct: 989 CTGITD--VSPLSKLSSLRTLDLSHCTGIT--DVSPLSELSSLRTLDLSHCTGI-TDVSP 1043
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL 209
L L L +L++ C ITD + PLS L++L++L +S C+ +TD ++ L L L L
Sbjct: 1044 LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTL 1099
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDEC 268
+L C + LS L SL L+L+ C D S++ SL+ L+L ITD
Sbjct: 1100 DLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD-- 1155
Query: 269 LVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSL 326
+ L L++L +L+L C GI D + L+ L++L ++ LS TGI+D S L+ LSSL
Sbjct: 1156 VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLCTLELSHCTGITDVS--PLSELSSL 1211
Query: 327 KSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI--CGG 382
++L+L R ITD ++ L+ L+ LDL ITD + L +LR+L++ C G
Sbjct: 1212 RTLDLSHCRGITD--VSPLSELSNFVQLDLSHCTGITD--VSPLSVLSSLRTLDLSYCTG 1267
Query: 383 ----------------------GLTD---------------------AGVKHIKDLSSLT 399
G+TD A V + +LSSL
Sbjct: 1268 ITNVSPLSNLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSHCRGIANVSPLSNLSSLR 1327
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+LNLS +TD + +S L+ L +L++S+ G+ + PL L SL
Sbjct: 1328 MLNLSHCTGITD--VSPLSVLSSLRTLDLSH----CTGITDVSPLSELSSL 1372
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 188/377 (49%), Gaps = 40/377 (10%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
LQ L + C I+D + L LS+ L IT + + L +L LDL CT
Sbjct: 544 LQKLYLSHCTGITD--VPPLSALSSFEKLDLSHCTGIT--DVSPLSKLSSLHTLDLSHCT 599
Query: 143 RIHGGLVNLKGLMKLESL---NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
G+ N+ L+K SL +I C IT+ + PLS L++L++L +S C+ +TD ++
Sbjct: 600 ----GITNVSPLLKFSSLRMLDISHCTGITN--VSPLSELSSLRTLDLSHCTGITD--VS 651
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
L L L+L C + LS SL L+++ C SK+ SL L+
Sbjct: 652 PLSKFSSLHTLDLSHC-TGITNVSPLSKFSSLRMLDISHCT-GITNVSPLSKLSSLHTLD 709
Query: 259 LGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF-TGISDGS 316
L ITD + L L++L +L+ C G + L+ L++L ++++S TGI+D S
Sbjct: 710 LSHCTGITD--VSPLSKLSSLRTLDFSHC-TGITNVSPLSELSSLRTLDISHCTGITDVS 766
Query: 317 LRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNL 374
L+ LSSL++L+L TD T ++ L+ ++ L LDL +TD + L L
Sbjct: 767 --PLSELSSLRTLDL--SHCTDITNVSPLSKISTLQKLDLSHCTGVTD--VSPLSKMIGL 820
Query: 375 RSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L + G+TD V + +LSSL +L+LS +TD + +S L+ L +L++S+
Sbjct: 821 EKLYLSHCTGITD--VPPLSELSSLRMLDLSHCTGITD--VSPLSELSSLHTLDLSH--- 873
Query: 434 TSAGLRHLKPLKNLRSL 450
G+ + PL L SL
Sbjct: 874 -CTGITDVSPLSELSSL 889
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 200/378 (52%), Gaps = 38/378 (10%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SSL ++DLS + +TD + L + S+L++LD + C I+D + L LS+L +L
Sbjct: 1347 SSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 1402
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
IT + + L +L L L CT I + L L L +L++ C IT D+ P
Sbjct: 1403 CTGIT--DVSPLSVLSSLRTLGLSHCTGI-TDVSPLSELSSLRTLDLSHCTGIT--DVSP 1457
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
LS L++L++L +S C+ +TD ++ L L L L C + LS L +L L+
Sbjct: 1458 LSELSSLRTLDLSHCTGITD--VSPLSVFSSLRTLGLSHC-TGITDVSPLSELSNLRTLD 1514
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
L+ C D S++ SL+ L+L ITD + L L++L +L+L C GI D
Sbjct: 1515 LSHCTGITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD-- 1569
Query: 293 LVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGL 350
+ L+ L++L +++LS TGI+D S L+ LSSL++L+L ITD ++ L+ L+ L
Sbjct: 1570 VSPLSKLSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSELSSL 1625
Query: 351 THLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 408
LDL ITD + L +LR+L++ G+TD V + +LSSL L+L
Sbjct: 1626 RTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLLHCTG 1681
Query: 409 LTDKTLELISGLTGLVSL 426
+TD +S L+ L SL
Sbjct: 1682 ITD-----VSPLSELSSL 1694
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 181/359 (50%), Gaps = 50/359 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L++LD +
Sbjct: 1348 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 1402
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT I +
Sbjct: 1403 CTGITD--VSPLSVLSSLRTLGLSHCTGIT--DVSPLSELSSLRTLDLSHCTGI-TDVSP 1457
Query: 151 LKGLMKLESLNIKWCNCITD---------------------SDMKPLSGLTNLKSLQIS- 188
L L L +L++ C ITD +D+ PLS L+NL++L +S
Sbjct: 1458 LSELSSLRTLDLSHCTGITDVSPLSVFSSLRTLGLSHCTGITDVSPLSELSNLRTLDLSH 1517
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
C+ +TD ++ L L L L+L C + LS L SL L+L+ C D
Sbjct: 1518 CTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPL 1573
Query: 249 SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESIN 306
SK+ SL+ L+L ITD + L L++L +L+L C GI D + L+ L++L +++
Sbjct: 1574 SKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLD 1629
Query: 307 LSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITD 362
LS TGI+D S L+ LSSL++L+L ITD ++ L+ L+ L LDL ITD
Sbjct: 1630 LSHCTGITDVS--PLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLLHCTGITD 1684
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 125/390 (32%), Positives = 193/390 (49%), Gaps = 36/390 (9%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D+ D L L L++LD + C I+D L L LS L +L IT +
Sbjct: 345 DINDVTLRDLDGNECLRTLDLSHCTGITDVSL--LSKLSGLHTLGLSHCTGIT--DVSPL 400
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+ L L L L CT I + L L L +L + C IT D+ PLS ++L++L I
Sbjct: 401 SNLSGLRMLGLSHCTGI-TDVSPLSELSSLRTLGLSHCTGIT--DVSPLSVFSSLRTLGI 457
Query: 188 S-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S C+ +TD S ++ + GLQKL L + G +T + LSAL S L+L+ C D
Sbjct: 458 SHCTGITDVSPLSKMNGLQKLYLSHCTG--ITD--VPPLSALSSFEKLDLSHCTGITD-V 512
Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLE 303
S + SL+ L++ ITD + L + L+ L L C GI D + L+ L++ E
Sbjct: 513 SPLSVLSSLRTLDISHCTGITD--VSPLSKMNGLQKLYLSHCTGITD--VPPLSALSSFE 568
Query: 304 SINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-IT 361
++LS TGI+D S L+ LSSL +L+L + T ++ L + L LD+ IT
Sbjct: 569 KLDLSHCTGITDVS--PLSKLSSLHTLDL-SHCTGITNVSPLLKFSSLRMLDISHCTGIT 625
Query: 362 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
+ + L +LR+L++ G+TD V + SSL L+LS +T+ + +S
Sbjct: 626 N--VSPLSELSSLRTLDLSHCTGITD--VSPLSKFSSLHTLDLSHCTGITN--VSPLSKF 679
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+ L L++S+ G+ ++ PL L SL
Sbjct: 680 SSLRMLDISH----CTGITNVSPLSKLSSL 705
>gi|290982059|ref|XP_002673748.1| predicted protein [Naegleria gruberi]
gi|284087334|gb|EFC41004.1| predicted protein [Naegleria gruberi]
Length = 370
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 145/289 (50%), Gaps = 2/289 (0%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+++ L + LK L + + + +GI YL L++LT LN+ C + L L L +L
Sbjct: 23 NLQVLDSMKELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCCYI-GLNLSHLILLKALT 81
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+LN+ + +G + ++ L L++G N+I E ++ GL L LN+ S I +
Sbjct: 82 HLNITSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISGLEQLTYLNIRSNDIKKD 141
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G +++ + L +N+ I DG R ++ + L +L++ I + G ++ L ++
Sbjct: 142 GAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYNDIGEEGAKYISELMNVS 201
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
LD+ G I + GA ++ K L L I + G ++I L+ LT L++S N N+ D
Sbjct: 202 ILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISSLNQLTHLSISTN-NIGD 260
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
+ + I + L L++ ++I G + + LKNL +L + ++ N
Sbjct: 261 EGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLYISGNEIGDN 309
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 154/350 (44%), Gaps = 30/350 (8%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRN 116
L ++L +++ +G+ +L L L+ + C I ++ L HL L LT L+ N
Sbjct: 32 ELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCCYIGLN---LSHLILLKALTHLNITSN 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I A+G K + L KL + N I K +
Sbjct: 89 N-IRAEGAKYIGEMKQLTKLSI-------------------------GSNDIGPEGAKYI 122
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
SGL L L I + + G ++ +++LT LN+ G + +S + L L++
Sbjct: 123 SGLEQLTYLNIRSNDIKKDGAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVG 182
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ ++G + S++ ++ +L++G N I ++ + + L L + C IG EG +
Sbjct: 183 YNDIGEEGAKYISELMNVSILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYI 242
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ L L +++S I D + + + L L++ +I G ++ L L +L +
Sbjct: 243 SSLNQLTHLSISTNNIGDEGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLYIS 302
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
G I D+GA ++ L L+I +T G+K+I ++ LT L + N
Sbjct: 303 GNEIGDNGAQFISEMNQLTILDISSINITPIGIKYISNMEYLTDLRIIDN 352
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 137/296 (46%), Gaps = 3/296 (1%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L N+ +L + + + L +++L LNLE + + L +L L LN++ C
Sbjct: 6 LENIANLAVRMNGEIGFNLQVLDSMKELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCC 65
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ + + +L LN+ N I E ++ + L L++ S IG EG ++G
Sbjct: 66 YIGLN-LSHLILLKALTHLNITSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISG 124
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L L +N+ I + ++ + L LN+ I D G ++ + L++L +
Sbjct: 125 LEQLTYLNIRSNDIKKDGAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYN 184
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I + GA Y+ N+ L+I G + + G K I ++ LT L + CN+ + + IS
Sbjct: 185 DIGEEGAKYISELMNVSILDIGGNSINEKGAKFIGEMKQLTDLRIYC-CNIGVEGTQYIS 243
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPNL 473
L L L++S + I G +++ +K L L++ K+ K + Q ++L NL
Sbjct: 244 SLNQLTHLSISTNNIGDEGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNL 299
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 128/277 (46%), Gaps = 26/277 (9%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G +++ GL LT L+ R N+ I G K + + L L++ GG +
Sbjct: 114 IGPEGAKYISGLEQLTYLNIRSND-IKKDGAKHISEMKQLTYLNVVGNHICDGGARFISE 172
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L +L++ + N I + K +S L N+ L I + + + G ++ +++LT L +
Sbjct: 173 MKQLSNLSVGY-NDIGEEGAKYISELMNVSILDIGGNSINEKGAKFIGEMKQLTDLRIYC 231
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
C + +S+L L +L+++ + D+G + IG +K ++TD
Sbjct: 232 CNIGVEGTQYISSLNQLTHLSISTNNIGDEGAK---YIGQMK-------QLTD------- 274
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L++ IG EG ++ L NL ++ +S I D + ++ ++ L L++ +
Sbjct: 275 -------LSIRENKIGIEGAKSIGQLKNLLNLYISGNEIGDNGAQFISEMNQLTILDISS 327
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
IT G+ ++++ LT L + I GA Y N
Sbjct: 328 INITPIGIKYISNMEYLTDLRIIDNNIDSMGAKYQSN 364
>gi|290979019|ref|XP_002672232.1| predicted protein [Naegleria gruberi]
gi|284085807|gb|EFC39488.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 161/326 (49%), Gaps = 4/326 (1%)
Query: 133 LVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L KL+LE + IH G + L +L L + +C K L L +L L I+ +
Sbjct: 34 LKKLNLENNSNIHPSGFKYICSLEQLTDLYMTFC-YFRLPIAKHLPSLKSLTYLLITGNY 92
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+ G Y+ +++L L++ + +S L L LN+ +++ DG + S++
Sbjct: 93 IGVEGAKYIGEMKQLKQLHIANNNIGPEGAKHISGLEQLTILNIRANEITVDGAKFISEM 152
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
L VLN+ N+I DE + G+ L +L++ IG+ G ++ + N+ +N+ F
Sbjct: 153 KQLTVLNIIGNDICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMLNITKLNIGFNS 212
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
I+D + + L LN+++ I G+ ++S LTHL + I++ A+++
Sbjct: 213 IND-CVECFGKMKQLTDLNVNSSCIGLCGIVFISSFNQLTHLSIASNSISNYEASHISQM 271
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
KN+ L+I + D GV+ I +++ LT LN+S ++T ++ I + L L ++++
Sbjct: 272 KNVIKLDISDNRIGDNGVQSISEMNQLTELNVSS-IDITPIGIQYICKMDNLTYLIIAHN 330
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKV 457
I G + +K+L L++ + V
Sbjct: 331 NIGVKGANQISEMKHLAQLSIYNNAV 356
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 152/347 (43%), Gaps = 28/347 (8%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G +++ + L L NN I +G K +GL L L++ G + + +L
Sbjct: 97 GAKYIGEMKQLKQLHIANNN-IGPEGAKHISGLEQLTILNIRANEITVDGAKFISEMKQL 155
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
LNI N I D K +SG+ L +L IS + + ++G Y+ + +T LN+ G
Sbjct: 156 TVLNI-IGNDICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMLNITKLNI-GFNSI 213
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
C++ + L LN+N + G S L L++ N I++ H+ + N
Sbjct: 214 NDCVECFGKMKQLTDLNVNSSCIGLCGIVFISSFNQLTHLSIASNSISNYEASHISQMKN 273
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
+ L++ IGD G ++ ++ ++ L LN+ + IT
Sbjct: 274 VIKLDISDNRIGDNG------------------------VQSISEMNQLTELNVSSIDIT 309
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
G+ + + LT+L + I GA + K+L L I + D G K I ++
Sbjct: 310 PIGIQYICKMDNLTYLIIAHNNIGVKGANQISEMKHLAQLSIYNNAVGDEGAKFISEMEQ 369
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
LT LN+ N + D+ ++ +SG+ L LN ++ I+ G +++ +
Sbjct: 370 LTFLNIGSN-EIGDEGVKALSGMKQLTELNTVDNNISEEGENYIREM 415
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 136/299 (45%), Gaps = 25/299 (8%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G +H+ GL LT L+ R N IT G K + + L L++ G + G
Sbjct: 117 IGPEGAKHISGLEQLTILNIRAN-EITVDGAKFISEMKQLTVLNIIGNDICDEGAKFISG 175
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS------------------ 195
+ +L +L+I N I ++ K +S + N+ L I + + D
Sbjct: 176 MKQLTNLDIS-VNNIGENGAKYVSEMLNITKLNIGFNSINDCVECFGKMKQLTDLNVNSS 234
Query: 196 -----GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
GI ++ +LT L++ ++ +S + ++ L+++ ++ D+G + S+
Sbjct: 235 CIGLCGIVFISSFNQLTHLSIASNSISNYEASHISQMKNVIKLDISDNRIGDNGVQSISE 294
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ L LN+ +IT + ++ + NL L + IG +G ++ + +L +++
Sbjct: 295 MNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGVKGANQISEMKHLAQLSIYNN 354
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
+ D + ++ + L LN+ + +I D G+ AL+ + LT L+ I++ G Y+R
Sbjct: 355 AVGDEGAKFISEMEQLTFLNIGSNEIGDEGVKALSGMKQLTELNTVDNNISEEGENYIR 413
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 119/263 (45%), Gaps = 7/263 (2%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLK 255
+ +L+ + L ++N E LDS+ L L NL N + G + + L
Sbjct: 5 LPFLENIANLRVINNE-VGFNCEILDSMKELKKL---NLENNSNIHPSGFKYICSLEQLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L + F HL L +L L + IG EG + + L+ ++++ I
Sbjct: 61 DLYMTFCYFRLPIAKHLPSLKSLTYLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPE 120
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+ ++GL L LN+ A +IT G ++ + LT L++ G I D GA ++ K L
Sbjct: 121 GAKHISGLEQLTILNIRANEITVDGAKFISEMKQLTVLNIIGNDICDEGAKFISGMKQLT 180
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
+L+I + + G K++ ++ ++T LN+ N + +E + L LNV++S I
Sbjct: 181 NLDISVNNIGENGAKYVSEMLNITKLNIGFNS--INDCVECFGKMKQLTDLNVNSSCIGL 238
Query: 436 AGLRHLKPLKNLRSLTLESCKVT 458
G+ + L L++ S ++
Sbjct: 239 CGIVFISSFNQLTHLSIASNSIS 261
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 131/278 (47%), Gaps = 10/278 (3%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L +++ G+D+ D G + L +LD + I + G +++ + N+T L+
Sbjct: 150 SEMKQLTVLNIIGNDICDEGAKFISGMKQLTNLDISVN-NIGENGAKYVSEMLNITKLNI 208
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N+ ++ F + L L++ G+V + +L L+I N I++ +
Sbjct: 209 GFNS--INDCVECFGKMKQLTDLNVNSSCIGLCGIVFISSFNQLTHLSI-ASNSISNYEA 265
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+S + N+ L IS +++ D+G+ + + +LT LN+ +T + + + +L YL
Sbjct: 266 SHISQMKNVIKLDISDNRIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYL 325
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ + G + S++ L L++ N + DE + + L LN+ S IGDEG+
Sbjct: 326 IIAHNNIGVKGANQISEMKHLAQLSIYNNAVGDEGAKFISEMEQLTFLNIGSNEIGDEGV 385
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L+G+ L +N IS+ G + ++ +NL
Sbjct: 386 KALSGMKQLTELNTVDNNISE------EGENYIREMNL 417
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 118/286 (41%), Gaps = 49/286 (17%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-----ERCTRIHG-- 146
I D G + + G+ LT+L NN I G K + ++N+ KL++ C G
Sbjct: 165 ICDEGAKFISGMKQLTNLDISVNN-IGENGAKYVSEMLNITKLNIGFNSINDCVECFGKM 223
Query: 147 ----------------GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
G+V + +L L+I N I++ + +S + N+ L IS +
Sbjct: 224 KQLTDLNVNSSCIGLCGIVFISSFNQLTHLSIA-SNSISNYEASHISQMKNVIKLDISDN 282
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++ D+G+ + + +LT LN+ +T + + + +L YL + + G + S+
Sbjct: 283 RIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGVKGANQISE 342
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ L L++ N + DE + + L LN+ S IGDEG+
Sbjct: 343 MKHLAQLSIYNNAVGDEGAKFISEMEQLTFLNIGSNEIGDEGV----------------- 385
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ L+G+ L LN I++ G + + H ++
Sbjct: 386 -------KALSGMKQLTELNTVDNNISEEGENYIREMNLTDHTGIY 424
>gi|290972542|ref|XP_002669011.1| predicted protein [Naegleria gruberi]
gi|284082551|gb|EFC36267.1| predicted protein [Naegleria gruberi]
Length = 335
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 151/304 (49%), Gaps = 13/304 (4%)
Query: 167 CITDSDMKPLSG-----LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
CI S++ P S L+NL +L I+ + D G + L+++ L + +
Sbjct: 22 CINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQLKQIKYLRACENGIGSIGA 81
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
++ + +L L L+ ++ DDG E K+ L L+LG NEITD+ L L L L +L
Sbjct: 82 RNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLGENEITDQGLKSLNNLEKLVTL 141
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINLSFT--GISDGSLRKLAGLSSLKSLNLDARQITDT 339
NL + + NL +++L+ NL T I + + +A + LK L ++ IT
Sbjct: 142 NLK-----NNKITNLETISHLKLTNLDVTTNKIGNEGAKYIAEMKRLKVLRINDNHITSD 196
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
G L+ +T LT + L I D GA + NL L++ G G+T G+K I +L +L
Sbjct: 197 GAKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLKGAGITGEGLKTICELINLR 256
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
L++S N ++D + ISG+ L +LNV + I G + + +++L L + +T
Sbjct: 257 RLHVSHN-QISDLGAKYISGMNNLTALNVCDCNIGFEGAQFISNMQSLADLDITKNNLTT 315
Query: 460 NDIK 463
N IK
Sbjct: 316 NGIK 319
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 160/329 (48%), Gaps = 32/329 (9%)
Query: 96 DGGLEHLRGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
D LE + +SN + L+ ++ +T Q A L NL L + RC+ G N+
Sbjct: 3 DCNLETINEISNHSKLTELCINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQ 62
Query: 154 LMKLESLNIKWC-------------------------NCITDSDMKPLSGLTNLKSLQIS 188
L +++ L + C N I D ++ + L+ L L +
Sbjct: 63 LKQIKYL--RACENGIGSIGARNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLG 120
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++TD G+ L L+KL LNL+ +T L+++S L L L++ ++ ++G +
Sbjct: 121 ENEITDQGLKSLNNLEKLVTLNLKNNKITN--LETISHL-KLTNLDVTTNKIGNEGAKYI 177
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
+++ LKVL + N IT + L G+T L + L IGDEG +++ L NLE ++L
Sbjct: 178 AEMKRLKVLRINDNHITSDGAKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLK 237
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
GI+ L+ + L +L+ L++ QI+D G ++ + LT L++ I GA ++
Sbjct: 238 GAGITGEGLKTICELINLRRLHVSHNQISDLGAKYISGMNNLTALNVCDCNIGFEGAQFI 297
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
N ++L L+I LT G+K +++ +
Sbjct: 298 SNMQSLADLDITKNNLTTNGIKLCRNMKT 326
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 22/224 (9%)
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
E+T + + L+NL +L+++ C I D G N++ L ++ + GI R +
Sbjct: 27 ELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQLKQIKYLRACENGIGSIGARNIGE 86
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ +L L L +I D GL ++ L+ L +LDL ITD G L N + L +L +
Sbjct: 87 MKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLGENEITDQGLKSLNNLEKLVTLNLKNN 146
Query: 383 GLT---------------------DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
+T + G K+I ++ L +L ++ N ++T +++SG+T
Sbjct: 147 KITNLETISHLKLTNLDVTTNKIGNEGAKYIAEMKRLKVLRINDN-HITSDGAKILSGMT 205
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
L + + ++ I G + L NL L L+ +T +K +
Sbjct: 206 QLTCIFLCDNLIGDEGALSIGLLYNLEYLDLKGAGITGEGLKTI 249
>gi|290981696|ref|XP_002673566.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284087150|gb|EFC40822.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 411
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 155/322 (48%), Gaps = 31/322 (9%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LS + NN +G F I +K+D E T + + L+ + +L L++++ N TD
Sbjct: 74 LSLKCNNDDKLKGQ--FLQNIETLKVDRESLTIMFDCKI-LEFMKQLTDLDVQYNNLGTD 130
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG---CPVTAACLDSLSAL 227
++K +S L L++L IS + + G Y+ L +LT LN+ G C T +S++
Sbjct: 131 -EVKYISQLKQLRNLDISINNIDKEGAKYISQLSQLTKLNISGNCYCIGTEGA-KHISSM 188
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L YL++++ ++ D+G + S++ L L + N I DE H+ G+ L L++
Sbjct: 189 KQLTYLDISKNEIGDEGAKSISELKQLTSLYILTNNIGDEGAKHISGMNQLTELDISFNL 248
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGS-----------------------LRKLAGLS 324
IG EG+ +++ + L S++++ I DG+ ++++ L
Sbjct: 249 IGIEGVRHISSMKQLTSLSINNAKIGDGAKYLGAMSQLTNLNIFSCNIESNGAKQISALQ 308
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
LK L + Q+ G ++ + L L + G I + GA ++ K L +L IC +
Sbjct: 309 QLKFLGIGYNQLGHEGAKNISEMKQLDSLYICGNDIGERGAKHISGMKRLTTLNICENNI 368
Query: 385 TDAGVKHIKDLSSLTLLNLSQN 406
D G K I SLT+L++ N
Sbjct: 369 GDNGAKFISQSKSLTILSIYSN 390
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 142/299 (47%), Gaps = 4/299 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN- 116
L +D+ +++ + ++ L++LD + I G +++ LS LT L+ N
Sbjct: 116 QLTDLDVQYNNLGTDEVKYISQLKQLRNLDISIN-NIDKEGAKYISQLSQLTKLNISGNC 174
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I +G K + + L LD+ + G ++ L +L SL I N I D K +
Sbjct: 175 YCIGTEGAKHISSMKQLTYLDISKNEIGDEGAKSISELKQLTSLYI-LTNNIGDEGAKHI 233
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
SG+ L L IS + + G+ ++ +++LT L++ + L A+ L LN+
Sbjct: 234 SGMNQLTELDISFNLIGIEGVRHISSMKQLTSLSINNAKIGDGA-KYLGAMSQLTNLNIF 292
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
C + +G ++ S + LK L +G+N++ E ++ + L+SL + IG+ G ++
Sbjct: 293 SCNIESNGAKQISALQQLKFLGIGYNQLGHEGAKNISEMKQLDSLYICGNDIGERGAKHI 352
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+G+ L ++N+ I D + ++ SL L++ + I+ G L + L LD+
Sbjct: 353 SGMKRLTTLNICENNIGDNGAKFISQSKSLTILSIYSNDISQVGEKFLQRMKQLERLDI 411
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 20/198 (10%)
Query: 272 LKG--LTNLESLNLD--------SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
LKG L N+E+L +D C I L + L +++ + + ++ ++
Sbjct: 84 LKGQFLQNIETLKVDRESLTIMFDCKI-------LEFMKQLTDLDVQYNNLGTDEVKYIS 136
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG--ARITDSGAAYLRNFKNLRSLEI 379
L L++L++ I G ++ L+ LT L++ G I GA ++ + K L L+I
Sbjct: 137 QLKQLRNLDISINNIDKEGAKYISQLSQLTKLNISGNCYCIGTEGAKHISSMKQLTYLDI 196
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+ D G K I +L LT L + N N+ D+ + ISG+ L L++S + I G+R
Sbjct: 197 SKNEIGDEGAKSISELKQLTSLYILTN-NIGDEGAKHISGMNQLTELDISFNLIGIEGVR 255
Query: 440 HLKPLKNLRSLTLESCKV 457
H+ +K L SL++ + K+
Sbjct: 256 HISSMKQLTSLSINNAKI 273
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 319 KLAG--LSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
KL G L ++++L +D +T L + LT LD+ + Y+ K LR
Sbjct: 83 KLKGQFLQNIETLKVDRESLTIMFDCKILEFMKQLTDLDVQYNNLGTDEVKYISQLKQLR 142
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRIT 434
+L+I + G K+I LS LT LN+S NC + + + IS + L L++S + I
Sbjct: 143 NLDISINNIDKEGAKYISQLSQLTKLNISGNCYCIGTEGAKHISSMKQLTYLDISKNEIG 202
Query: 435 SAGLRHLKPLKNLRSLTL 452
G + + LK L SL +
Sbjct: 203 DEGAKSISELKQLTSLYI 220
>gi|149173736|ref|ZP_01852365.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148847266|gb|EDL61600.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 496
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 131/266 (49%), Gaps = 5/266 (1%)
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNL 235
GL + + + +++TD G+ YL L L LNL+ VT A L L L L L+L
Sbjct: 116 PGLRPVPAANVRRNQITDRGLGYLTELSSLRSLNLQATRVTDAGLLQYLPELPRLQRLSL 175
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT--NLESLNLDSCGIGDEGL 293
++D + L+ +NLG +++E +++L G +L LNL + + D+ L
Sbjct: 176 ACLDITDAALLALESLAWLESINLGHTAVSNEAILNLVGAKAFSLRRLNLSNTAVNDQAL 235
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ L + LS TGI+D + + L L L+ ITD G+ L + L L
Sbjct: 236 AECLPDSQLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDITDDGVRHLANCGHLRKL 295
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
+LF +ITD+ +L + + L + +TDAG+ + D +L L+L Q +LTDK
Sbjct: 296 ELFKTKITDTSLVWLAD-SGIEDLGLGFTAITDAGIPALTDFPALESLDL-QKTSLTDKG 353
Query: 414 LELISGLTGLVSLNVSNSRITSAGLR 439
L +S T L L + N+ I+ AG+
Sbjct: 354 LRFLSEATNLKQLQLDNTEISHAGIE 379
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 100/224 (44%), Gaps = 21/224 (9%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
++NL +E+ +E L HL E+L LD+ I D GL + + NLE + L T +SD
Sbjct: 32 LVNLMNSEVANEDLRHLIFYPGFEALILDNTSISDAGLNFIGEMRNLERLGLYDTLVSDD 91
Query: 316 SLRKL-------------------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L+ L GL + + N+ QITD GL LT L+ L L+L
Sbjct: 92 GLKPLLKLSKLEKLNIACAPGCLSPGLRPVPAANVRRNQITDRGLGYLTELSSLRSLNLQ 151
Query: 357 GARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
R+TD+G YL L+ L + +TDA + ++ L+ L +NL + L
Sbjct: 152 ATRVTDAGLLQYLPELPRLQRLSLACLDITDAALLALESLAWLESINLGHTAVSNEAILN 211
Query: 416 LISGLT-GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L+ L LN+SN+ + L P L L L +T
Sbjct: 212 LVGAKAFSLRRLNLSNTAVNDQALAECLPDSQLNKLELSDTGIT 255
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 124/286 (43%), Gaps = 51/286 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SSL S++L + VTD+GL+ +L + LQ L C+ I+D L L L+ L S+
Sbjct: 143 SSLRSLNLQATRVTDAGLLQYLPELPRLQRLSLA-CLDITDAALLALESLAWLESI---- 197
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N TA +A L+ L R + VN + L + C+ DS
Sbjct: 198 NLGHTAVSNEAILNLVGAKAFSLRRLN-LSNTAVNDQALAE----------CLPDS---- 242
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L++S + +TD AAC S L L L
Sbjct: 243 -----QLNKLELSDTGITD-----------------------AAC-QSCVECEWLTDLCL 273
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
N ++DDG + G L+ L L +ITD LV L + +E L L I D G+
Sbjct: 274 NFTDITDDGVRHLANCGHLRKLELFKTKITDTSLVWLAD-SGIEDLGLGFTAITDAGIPA 332
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
LT LES++L T ++D LR L+ ++LK L LD +I+ G+
Sbjct: 333 LTDFPALESLDLQKTSLTDKGLRFLSEATNLKQLQLDNTEISHAGI 378
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 32/138 (23%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITA 121
L+ +D+TD G+ HL +C +L+ L+ F +I+D L L G+ +L L F AIT
Sbjct: 273 LNFTDITDDGVRHLANCGHLRKLEL-FKTKITDTSLVWLADSGIEDL-GLGF---TAITD 327
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+ A L LDL++ + +TD ++ LS TN
Sbjct: 328 AGIPALTDFPALESLDLQKTS-------------------------LTDKGLRFLSEATN 362
Query: 182 LKSLQISCSKVTDSGIAY 199
LK LQ+ ++++ +GI +
Sbjct: 363 LKQLQLDNTEISHAGIEF 380
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 16/189 (8%)
Query: 15 VYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
++ +T+ SL D ++DL LG + + D + + + +L S+DL + +TD GL
Sbjct: 297 LFKTKITDTSLVWLADSGIEDLGLG-FTAITDAGIPAL-TDFPALESLDLQKTSLTDKGL 354
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L + +NL+ L + +IS G+E L +L S N I G+ +L
Sbjct: 355 RFLSEATNLKQLQLDN-TEISHAGIEF---LLSLPLESLSLNPGIDNAGLNTLVRHNSLR 410
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKV 192
L + C + N + LMKLE L + I DS D+ PL L LK L + +
Sbjct: 411 NLAIWNC-----NVTNWQPLMKLELLEVL---LIDDSVTDLSPLRELDQLKYLLLWGDRF 462
Query: 193 TDSGIAYLK 201
+ + +A L+
Sbjct: 463 SPTELARLR 471
>gi|290985429|ref|XP_002675428.1| predicted protein [Naegleria gruberi]
gi|284089024|gb|EFC42684.1| predicted protein [Naegleria gruberi]
Length = 451
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 26/311 (8%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D + K +S + L SL IS + + D G YL +++L LN+ + +S
Sbjct: 142 NGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGKNEIDEGA-KYIS 200
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ L L+++ Q+ +G + ++ L LN+ N I E + + + L SLN+
Sbjct: 201 EMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGVKLISEMRQLTSLNIGE 260
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
IG EG ++ + L S+N+S I D + ++ + L SLN+ A +I + G ++
Sbjct: 261 SDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISLNIRANRIVNQGAKFIS 320
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
+ L L++ RI G + K L SL I +++ G K I ++ LTLLN+S
Sbjct: 321 EMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGTKLISEMRQLTLLNISN 380
Query: 406 NCNLTDKTLELIS---------------GLTG---------LVSLNVSNSRITSAGLRHL 441
N + D+ +LIS G+ G L SLN++++RI G + +
Sbjct: 381 N-EIGDEETKLISEMKQLKSLDISYNQIGIEGAKLISEMKQLTSLNIADNRIGGEGAKLI 439
Query: 442 KPLKNLRSLTL 452
+K L S+TL
Sbjct: 440 SEMKQLTSITL 450
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 172/384 (44%), Gaps = 17/384 (4%)
Query: 6 ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG--VNDKWMDVI---------AS 54
IS+Q FN + LT + F +Q Q+ VN + D + S
Sbjct: 70 ISKQFFNVIKERSKLTIQFKKKFTKKRVQLFLKSQFMNCIVNVTYSDWLLDSFEEAKFIS 129
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ L S+ +SG+ + D + + L SLD + + I D G ++L + L SL+
Sbjct: 130 KMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANL-IGDEGAKYLSEMKQLISLNIG 188
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDM 173
+N +G K + + L LD+ G ++ + +L SLNI C N I +
Sbjct: 189 KNE--IDEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNI--CGNRIGIEGV 244
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I S + G + +++LT LN+ + +S + L L
Sbjct: 245 KLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISL 304
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N+ ++ + G + S++ L+ LN+ N I E + + + L SLN+ S I +EG
Sbjct: 305 NIRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGT 364
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
++ + L +N+S I D + ++ + LKSL++ QI G ++ + LT L
Sbjct: 365 KLISEMRQLTLLNISNNEIGDEETKLISEMKQLKSLDISYNQIGIEGAKLISEMKQLTSL 424
Query: 354 DLFGARITDSGAAYLRNFKNLRSL 377
++ RI GA + K L S+
Sbjct: 425 NIADNRIGGEGAKLISEMKQLTSI 448
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 113/218 (51%), Gaps = 3/218 (1%)
Query: 247 KF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
KF SK+ L L++ N I DE + + L SL++ + IGDEG L+ + L S+
Sbjct: 126 KFISKMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISL 185
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
N+ I +G+ + ++ + L SL++ Q+ G + + LT L++ G RI G
Sbjct: 186 NIGKNEIDEGA-KYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGV 244
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
+ + L SL I + G K I ++ LT LN+S N + D+ +LIS + L+S
Sbjct: 245 KLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNL-IGDEGAKLISEMKQLIS 303
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
LN+ +RI + G + + ++ LRSL + + ++ +K
Sbjct: 304 LNIRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVK 341
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 134/278 (48%), Gaps = 26/278 (9%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
++ +++LT L++ G + +S + L L+++ + D+G + S++ L LN
Sbjct: 127 FISKMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLN 186
Query: 259 LGFNEITDECLVHLKGLTNLESLN----------------------LDSCG--IGDEGLV 294
+G NEI DE ++ + L SL+ L+ CG IG EG+
Sbjct: 187 IGKNEI-DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGVK 245
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
++ + L S+N+ + I + ++ + L SLN+ I D G ++ + L L+
Sbjct: 246 LISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISLN 305
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ RI + GA ++ + LRSL I + GVK I ++ L LN+ N ++++
Sbjct: 306 IRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSN-RISNEGT 364
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+LIS + L LN+SN+ I + + +K L+SL +
Sbjct: 365 KLISEMRQLTLLNISNNEIGDEETKLISEMKQLKSLDI 402
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 153/322 (47%), Gaps = 4/322 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LTSLS N I + K + + L LD+ G L + +L SLNI
Sbjct: 131 MKQLTSLSIS-GNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGK 189
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
D K +S + L SL IS ++V G ++ +++LT LN+ G + + +
Sbjct: 190 NEI--DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGVKLI 247
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L LN+ + +G + S++ L LN+ N I DE + + L SLN+
Sbjct: 248 SEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISLNIR 307
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ I ++G ++ + L S+N+S I ++ ++ + L SLN+ + +I++ G +
Sbjct: 308 ANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGTKLI 367
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
+ + LT L++ I D + K L+SL+I + G K I ++ LT LN++
Sbjct: 368 SEMRQLTLLNISNNEIGDEETKLISEMKQLKSLDISYNQIGIEGAKLISEMKQLTSLNIA 427
Query: 405 QNCNLTDKTLELISGLTGLVSL 426
N + + +LIS + L S+
Sbjct: 428 DN-RIGGEGAKLISEMKQLTSI 448
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 119/235 (50%), Gaps = 2/235 (0%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L L+++ + D+ + S++ L L++ N I DE +L + L SLN+
Sbjct: 128 ISKMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNI 187
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
I DEG ++ + L S+++S+T + + + + L SLN+ +I G+
Sbjct: 188 GKNEI-DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGVKL 246
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT L++ + I G + K L SL I + D G K I ++ L LN+
Sbjct: 247 ISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISLNI 306
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
N + ++ + IS + L SLN+SN+RI G++ + +K L SL + S +++
Sbjct: 307 RAN-RIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRIS 360
>gi|158336627|ref|YP_001517801.1| internalin A protein [Acaryochloris marina MBIC11017]
gi|158306868|gb|ABW28485.1| internalin A protein [Acaryochloris marina MBIC11017]
Length = 627
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 146/498 (29%), Positives = 233/498 (46%), Gaps = 76/498 (15%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWM-DVIASQGSSLLS------VDLSGSDVTDSGLI 75
+SL+ L D + QYP ++ ++ D+++ + S + LSG DVT + +
Sbjct: 55 LSLQGVDGHELVDASIEQYPHLSALYLFDIVSPEIVPFASLPGLSTIALSGQDVTAASYL 114
Query: 76 H--------------------LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
L D NL LD + QI+D L ++ L LTSL
Sbjct: 115 QPTTNLTTVYLKTTNISDYSFLSDLKNLTHLDLSNN-QIAD--LSFIQDLKQLTSLGLAS 171
Query: 116 NNAITAQGMK----------------AFAGLINLVKL-DLERCTRIHGGLVNLKGLMKLE 158
N + G+K ++ L+NL +L L R L L+ L L
Sbjct: 172 NKIVDISGLKDLTKLNTLNLRSNAIDDYSVLLNLKELRQLTVSVREATDLAFLQDLKDLT 231
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L++ + + I SD+ L L L L + +++ S IA L LQ+LT L+L ++
Sbjct: 232 HLDLSYNHWI--SDISVLRNLPKLTHLDLGSNQI--SNIAVLLDLQQLTHLSLSSNQISD 287
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ L L L L+++ +++D + L L++ NE++D + L+ LT L
Sbjct: 288 VSV--LQTLQGLERLDVSANEIADIAI--LQNLQGLTHLDISSNEVSDISV--LQDLTTL 341
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
LN+ S I D + L GLT L S+++S +S+ S L GL SL SLNL Q++D
Sbjct: 342 TQLNVSSNEIIDYSV--LQGLTQLTSLDVSDNQMSEIS--DLQGLHSLTSLNLSYNQLSD 397
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
++ L L L L+L ++D A L+NFK+L +L + +TD + H++DL L
Sbjct: 398 --ISVLQDLKQLATLNLSYNPVSD--IAVLQNFKDLTTLNLSFTQITD--LSHLQDLKGL 451
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L+L N +TD + + L GL LNVS++++ + + L+ LK L SL L ++
Sbjct: 452 ISLDLHSN-QITD--ISALQDLEGLYRLNVSDNQL--SDIAALRKLKGLFSLNLSINQIL 506
Query: 459 ANDIKRLQSRDLPNLVSF 476
DI LQ DL L S
Sbjct: 507 --DIAALQ--DLTRLTSL 520
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 188/405 (46%), Gaps = 70/405 (17%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
+ L L+D +L LD ++ ISD + LR L LT L N + A L+
Sbjct: 219 TDLAFLQDLKDLTHLDLSYNHWISDISV--LRNLPKLTHLDLGSNQ------ISNIAVLL 270
Query: 132 NLVKL-DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
+L +L L + + L+ L LE L++ N I +D+ L L L L IS +
Sbjct: 271 DLQQLTHLSLSSNQISDVSVLQTLQGLERLDVS-ANEI--ADIAILQNLQGLTHLDISSN 327
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+V+D I+ L+ L LT LN+ + + L L L L+++ Q+S+
Sbjct: 328 EVSD--ISVLQDLTTLTQLNVSSNEIIDYSV--LQGLTQLTSLDVSDNQMSE--ISDLQG 381
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ SL LNL +N+++D + L+ L L +LNL + D + L +L ++NLSFT
Sbjct: 382 LHSLTSLNLSYNQLSDISV--LQDLKQLATLNLSYNPVSDIAV--LQNFKDLTTLNLSFT 437
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I+D L L L L SL+L + QITD ++AL L GL L++ +++D A LR
Sbjct: 438 QITD--LSHLQDLKGLISLDLHSNQITD--ISALQDLEGLYRLNVSDNQLSDIAA--LRK 491
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD------------------- 411
K L SL + + D + ++DL+ LT LN+S N L+D
Sbjct: 492 LKGLFSLNLSINQILD--IAALQDLTRLTSLNVSHN-QLSDISVLQGLTRLNSLDLGANQ 548
Query: 412 ----KTLELISGL----------------TGLVSLNVSNSRITSA 436
L+ I GL GL SLN+S+++I+S
Sbjct: 549 IADISVLQNIPGLFSLDLRFSDVSVFQDFKGLTSLNLSSNQISSV 593
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 31/226 (13%)
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT---------- 310
FN+ D+ HL+ N +LN + +G ++L G+ E ++ S
Sbjct: 26 FNQSLDDTYHHLQLQPNAYALNDEHQIVG----LSLQGVDGHELVDASIEQYPHLSALYL 81
Query: 311 -GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
I + A L L ++ L + +T + L T LT + L I+D ++L
Sbjct: 82 FDIVSPEIVPFASLPGLSTIALSGQDVT--AASYLQPTTNLTTVYLKTTNISD--YSFLS 137
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
+ KNL L++ + D + I+DL LT L L+ N K ++ ISGL L LN
Sbjct: 138 DLKNLTHLDLSNNQIAD--LSFIQDLKQLTSLGLASN-----KIVD-ISGLKDLTKLNTL 189
Query: 430 NSRITSA-GLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 473
N R + L LK LR LT+ + T D+ LQ +DL +L
Sbjct: 190 NLRSNAIDDYSVLLNLKELRQLTVSVREAT--DLAFLQDLKDLTHL 233
>gi|290994522|ref|XP_002679881.1| leucine rich repeat protein [Naegleria gruberi]
gi|284093499|gb|EFC47137.1| leucine rich repeat protein [Naegleria gruberi]
Length = 340
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 128/247 (51%), Gaps = 3/247 (1%)
Query: 224 LSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+ + L +L++ C + DD G + S + L LN+ N I E +L L L +L
Sbjct: 95 IGKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQLTNLK 154
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNLDARQITDTGL 341
++S IG EG +++ + L ++N+S I + ++ +SS L L++ + QI++ GL
Sbjct: 155 INSNEIGPEGAKSISDMKQLTTLNISNNMIGMEGAKSISEISSQLTILDISSNQISNEGL 214
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
++ ++ LT LD G I D GA YL KNLR L+I + D G I L LT L
Sbjct: 215 KFISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLDISKNFVYDNGADLISKLPQLTNL 274
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
N+S N + ++ +S + L LN+SN+ I AG ++L ++ L L + ++ ++
Sbjct: 275 NISFN-EIGNQGAIYLSKMEKLTILNISNNLIGPAGAKYLGEMQQLTKLNINRNYLSVSE 333
Query: 462 IKRLQSR 468
+ L +
Sbjct: 334 LALLNKK 340
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 122/256 (47%), Gaps = 26/256 (10%)
Query: 153 GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
G MK L L+I+ C+ I D K +S L L L IS + + G YL L +LT L +
Sbjct: 96 GKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQLTNLKI 155
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLV 270
+ S+S + L LN++ + +G + S+I S L +L++ N+I++E L
Sbjct: 156 NSNEIGPEGAKSISDMKQLTTLNISNNMIGMEGAKSISEISSQLTILDISSNQISNEGLK 215
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+ ++ L SL+ + IGD+G + L+ L +L+ L+
Sbjct: 216 FISEMSQLTSLDTNGNNIGDKGA------------------------KYLSELKNLRVLD 251
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ + D G ++ L LT+L++ I + GA YL + L L I + AG K
Sbjct: 252 ISKNFVYDNGADLISKLPQLTNLNISFNEIGNQGAIYLSKMEKLTILNISNNLIGPAGAK 311
Query: 391 HIKDLSSLTLLNLSQN 406
++ ++ LT LN+++N
Sbjct: 312 YLGEMQQLTKLNINRN 327
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 139/313 (44%), Gaps = 29/313 (9%)
Query: 22 EVSLEAFRDCALQDL--CLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD-------S 72
E+ E R C QD + Y V+ +WM+VI L + + D S
Sbjct: 16 EIIYEILRSCD-QDFKFIVMNYALVSKQWMNVIQWYSKLELKFEKKREHIDDLLPSRFLS 74
Query: 73 GLIHLKDC----------------SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++ + C L LD C I D G +++ L+ LT L+ +N
Sbjct: 75 NIVQFRVCVERKPGEMFYQIIGKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQN 134
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I +G K + L L L + G ++ + +L +LNI N I K +
Sbjct: 135 N-IGPEGAKYLSKLDQLTNLKINSNEIGPEGAKSISDMKQLTTLNIS-NNMIGMEGAKSI 192
Query: 177 SGLT-NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S ++ L L IS +++++ G+ ++ + +LT L+ G + LS L +L L++
Sbjct: 193 SEISSQLTILDISSNQISNEGLKFISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLDI 252
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ + D+G + SK+ L LN+ FNEI ++ ++L + L LN+ + IG G
Sbjct: 253 SKNFVYDNGADLISKLPQLTNLNISFNEIGNQGAIYLSKMEKLTILNISNNLIGPAGAKY 312
Query: 296 LTGLTNLESINLS 308
L + L +N++
Sbjct: 313 LGEMQQLTKLNIN 325
>gi|222617264|gb|EEE53396.1| hypothetical protein OsJ_36445 [Oryza sativa Japonica Group]
Length = 625
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 134/480 (27%), Positives = 224/480 (46%), Gaps = 61/480 (12%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + +D + + L +VDLS D L + L+ L C
Sbjct: 73 VRRVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAATGLRELSLEKC 132
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLDLERCTRIHGGLV 149
+ ++D GL + G L LS + I+ G+ + + L LD+ + L
Sbjct: 133 LGVTDMGLAKVVVGCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLR 192
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIA--------- 198
++ L KLE L + C+CI D ++ L G +L+S+ +S C VT G+A
Sbjct: 193 SISSLEKLEELAMVCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFL 252
Query: 199 ---------------YLKGLQKL----TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
+L L KL T+L L+G V+++ L ++ +L + L++C
Sbjct: 253 QKLNAADSLHEMRQSFLSNLAKLKDTLTVLRLDGLEVSSSVLLAIGGCNNLVEIGLSKCN 312
Query: 240 -LSDDGCEKF-SKIGSLKVLNL---------GFNEITDECLVHLKGLTNLESLNLDSCG- 287
++D+G ++ L+V++L + I + C + +E L L+SC
Sbjct: 313 GVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSIAENCKM-------VEHLRLESCSS 365
Query: 288 IGDEGLVNL-TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALT 345
I ++GL + T NL+ I+L+ G++D +L+ LA S L L L I+D GLA ++
Sbjct: 366 ISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFIS 425
Query: 346 SLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLL 401
S G L LDL+ ITD G A L N K ++ L +C +TD+G+ H+ L LT L
Sbjct: 426 SSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSLEELTNL 485
Query: 402 NLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 458
L +T + ++ G L+ +++ + AGL L NLR LT+ C+VT
Sbjct: 486 ELRCLVRITGIGISSVAIGCKNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVT 545
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 126/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
+++K ++ IA+ +L +DL+ V D+ L HL CS L L C ISD GL +
Sbjct: 366 ISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFIS 425
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A A G K++ LN+
Sbjct: 426 SSCGKLIELDLYRCNSITDDGLAALA-----------------------NGCKKIKMLNL 462
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITDS + L L L +L++ C ++T GI+ V C
Sbjct: 463 CYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGIS----------------SVAIGC- 505
Query: 222 DSLSALGSLFYLNLNRCQLSDD-GCEKFSKIG-SLKVLNLGFNEITDECLVHLKGLTNLE 279
+L ++L RC DD G ++ +L+ L + + ++T L HL L++L
Sbjct: 506 ------KNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 557
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L D +V+L+ ++ +E ++ G L+KL LS LKS+
Sbjct: 558 CLQ-------DVKMVHLSWVS-IEGFEMALRAAC-GRLKKLKMLSGLKSV 598
>gi|168052598|ref|XP_001778727.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669846|gb|EDQ56425.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 643
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 124/472 (26%), Positives = 213/472 (45%), Gaps = 31/472 (6%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS--QGSS 58
MLP +++ ++FN L+ S L+ + F+ LQ++ L V+ +WM + +
Sbjct: 41 MLPSELAHELFNSLLQSHLLSATLIGLFQS-NLQEVNLSGEATVDGEWMAYLGGCRHLRA 99
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L + D +T++ + L + ++ LD C +ISD + H+ L L
Sbjct: 100 LRATDCKA--LTNNAIRQLTGLTAMEELDLARCRKISDDAVPHILSFKMLRKLGLAETGL 157
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T + GL LV LDL C L++ + L LE L++ W + +T+ + LS
Sbjct: 158 TTKGLLLL-PGLSRLVLLDLGGCPVTDADLISFQALGMLEHLDL-WGSKVTNMGARCLSS 215
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LK L ++ + VT L ++E DSL L LF L+
Sbjct: 216 FKTLKYLNLAMTAVTAIPQLNSLLSLNLCNCDVESIYGDGTFSDSL--LRELF---LSGA 270
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
LS S +L +L+L + + D + VH+ L L+L + G+ +E ++
Sbjct: 271 SLSLKDVISGSNTRNLHLLDLASSRVNDLDAFVHIP---KLAILDLRATGLTNELMLKFQ 327
Query: 298 GL-TNLESINLSFTGISDGSLRKLAGLSS-LKSLNLDARQITDTGLAALTSLTGLTHLDL 355
GL NL I+LS+T I + +AG + ++ L+L+ + D L L L+L
Sbjct: 328 GLGDNLRWIDLSYTKIDSEGVGAIAGHAPNVEQLSLNHTPVDDNVFIYLVHFPVLQSLNL 387
Query: 356 FGARITD------------SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
G+++ S +YL ++LR L++ G+ DA + +K+L L+ L++
Sbjct: 388 GGSKVNGFMTVGSEEFQQISVLSYLEQLQHLRRLDMRYTGVGDAALHGLKNLVQLSHLHI 447
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
N +L+D+ L+ +S LV L + + IT+ GL KP L L L C
Sbjct: 448 HSN-SLSDECLQQLSSFPNLVCLGIGGATITADGLLSYKPPSLLEELDLTDC 498
>gi|335058613|gb|AEH26502.1| leucine-rich repeat domain protein [uncultured Acidobacteria
bacterium A11]
Length = 402
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 130/269 (48%), Gaps = 4/269 (1%)
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
S++RN+ + + A L +L+ LDL GL + L LE LN+ +TD+
Sbjct: 136 SYKRNDTLVDAWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLT-LTPVTDA 194
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
++ L+GLTNL+ L ++ +K T G +L L++L N PV A L +S + L
Sbjct: 195 HLEHLAGLTNLRVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLE 254
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L + C +D G +K+ +L+ L +G + T + L LT L L+L E
Sbjct: 255 RLEIVHCHFTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAE 314
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G+ + + + +L + + I D +A LS+L+ L + +TD L L L
Sbjct: 315 GVRHASRIPSLRVLRI-HGQIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQ 373
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEIC 380
L++ G +ITD A L+ + L +LE+
Sbjct: 374 RLEIKGNKITDPALARLQ--QALPALEVV 400
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 117/252 (46%), Gaps = 2/252 (0%)
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
K + + D+ + L+ L +L SL ++ + V G+ + L+ L LNL PVT A L+
Sbjct: 138 KRNDTLVDAWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLE 197
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L+ L +L L+L + + +G K+ L+ N F + D L + +T LE L
Sbjct: 198 HLAGLTNLRVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLE 257
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+ C D G +L L NLE + + + ++ L L+ L+ L+L Q T G+
Sbjct: 258 IVHCHFTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVR 317
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
+ + L L + G +I D GAA + NL L GLTD + H L L L
Sbjct: 318 HASRIPSLRVLRIHG-QIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQRLE 376
Query: 403 LSQNCNLTDKTL 414
+ N +TD L
Sbjct: 377 IKGN-KITDPAL 387
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 120/259 (46%), Gaps = 3/259 (1%)
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
A LD L+ L L L+L ++ G + + +L+ LNL +TD L HL GLTNL
Sbjct: 146 AWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLEHLAGLTNL 205
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L+L S EG L L LE+ N FT ++D L ++ ++ L+ L + TD
Sbjct: 206 RVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLEIVHCHFTD 265
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
G L L L L + T + L LR L++ T GV+H + SL
Sbjct: 266 AGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVRHASRIPSL 325
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+L + + + D+ I+ L+ L L +N+ +T L H L L+ L ++ K+T
Sbjct: 326 RVLRI--HGQIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQRLEIKGNKIT 383
Query: 459 ANDIKRLQSRDLPNLVSFR 477
+ RLQ + LP L R
Sbjct: 384 DPALARLQ-QALPALEVVR 401
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 129/275 (46%), Gaps = 29/275 (10%)
Query: 46 DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
D W+D +A L+S+DL+ + V GL + NL+ L+ ++D LEHL GL
Sbjct: 145 DAWLDRLADL-PDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLT-PVTDAHLEHLAGL 202
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
+NL LS L +CT G L L +LE+ N +
Sbjct: 203 TNLRVLS-----------------------LASAKCT--GEGFRFLGKLKQLENANFHFT 237
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ D+ + +S +T L+ L+I TD+G +L L L L + T A ++ L+
Sbjct: 238 -PVNDAGLAGISTVTGLERLEIVHCHFTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLT 296
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
AL L L+L Q + +G S+I SL+VL + +I DE + L+NLE L ++
Sbjct: 297 ALTKLRELDLQDNQATAEGVRHASRIPSLRVLRI-HGQIKDEGAASIAQLSNLEILVANN 355
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
G+ D+ L + L L+ + + I+D +L +L
Sbjct: 356 AGLTDDALDHFARLPRLQRLEIKGNKITDPALARL 390
>gi|320169700|gb|EFW46599.1| protein tyrosine kinase [Capsaspora owczarzaki ATCC 30864]
Length = 1026
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 165/389 (42%), Gaps = 32/389 (8%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
SL FN I+ GL++LT ++ + NN IT F GL ++ + DL
Sbjct: 69 SLQFN---HITSLATNAFTGLTSLTQVTLQNNN-ITNIVATTFTGLSSVTQTDLSYNKLT 124
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
GL L L++ N IT S LT L L ++ + + + GL
Sbjct: 125 SLSANAFTGLTALAQLDLS-MNQITSIHATAFSDLTALTQLSLTNNIIRTIPSSAFTGLT 183
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
L LNL G TA ++ + L +L YL+L C ++ F+ + +L L L N+I
Sbjct: 184 ALNTLNLGGNLFTAIPANAFTGLSALNYLSLFACLITVISANAFTGLTALTFLTLQSNQI 243
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS 324
+ GLT L+ L L S I T L+ L ++LS+ I+ S GLS
Sbjct: 244 LNIPANAFAGLTALQFLYLSSAQITSLSANAFTDLSALTQLDLSYNMITSLSANTFTGLS 303
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
+L L+L IT T L+ LT L LF +IT A
Sbjct: 304 ALTRLDLSYNMITSLSANTFTGLSALTQLYLFENQITSIPA------------------- 344
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
DA L++LT L L +N +T + +GLT L L +S++RITS + L
Sbjct: 345 -DA----FAGLTALTQLFLFEN-QITSIPADAFAGLTALTQLELSHTRITSISANAFRGL 398
Query: 445 KNLRSLTLESCKVTANDIKRLQSRDLPNL 473
L +L L S ++ N I DLP L
Sbjct: 399 TALTALYLHSVQL--NSIPANAFTDLPTL 425
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 115/260 (44%), Gaps = 1/260 (0%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
GL L L L +T + + L +L YL+L+ +++ F+ + L L+L
Sbjct: 11 FAGLTALQYLELSYNQLTGISAQAFTGLTALNYLDLSNNRITKIPGSLFTGLTMLTTLSL 70
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
FN IT GLT+L + L + I + TGL+++ +LS+ ++ S
Sbjct: 71 QFNHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQTDLSYNKLTSLSANA 130
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
GL++L L+L QIT A + LT LT L L I ++ L +L +
Sbjct: 131 FTGLTALAQLDLSMNQITSIHATAFSDLTALTQLSLTNNIIRTIPSSAFTGLTALNTLNL 190
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G T LS+L L+L C +T + +GLT L L + +++I +
Sbjct: 191 GGNLFTAIPANAFTGLSALNYLSLFA-CLITVISANAFTGLTALTFLTLQSNQILNIPAN 249
Query: 440 HLKPLKNLRSLTLESCKVTA 459
L L+ L L S ++T+
Sbjct: 250 AFAGLTALQFLYLSSAQITS 269
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 143/333 (42%), Gaps = 26/333 (7%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L+ L + + N +T + +GLT L L +S +++T + GL LT L+
Sbjct: 11 FAGLTALQYLELSY-NQLTGISAQAFTGLTALNYLDLSNNRITKIPGSLFTGLTMLTTLS 69
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L+ +T+ ++ + L SL + L +++ F+ + S+ +L +N++T
Sbjct: 70 LQFNHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQTDLSYNKLTSLSAN 129
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
GLT L L+L I + LT L ++L+ I GL++L +LN
Sbjct: 130 AFTGLTALAQLDLSMNQITSIHATAFSDLTALTQLSLTNNIIRTIPSSAFTGLTALNTLN 189
Query: 331 LDARQITD------TGLAAL------------------TSLTGLTHLDLFGARITDSGAA 366
L T TGL+AL T LT LT L L +I + A
Sbjct: 190 LGGNLFTAIPANAFTGLSALNYLSLFACLITVISANAFTGLTALTFLTLQSNQILNIPAN 249
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L+ L + +T DLS+LT L+LS N +T + +GL+ L L
Sbjct: 250 AFAGLTALQFLYLSSAQITSLSANAFTDLSALTQLDLSYNM-ITSLSANTFTGLSALTRL 308
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
++S + ITS L L L L ++T+
Sbjct: 309 DLSYNMITSLSANTFTGLSALTQLYLFENQITS 341
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 1/220 (0%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
QL F+ + +L+ L L +N++T GLT L L+L + I TG
Sbjct: 2 QLISIPANAFAGLTALQYLELSYNQLTGISAQAFTGLTALNYLDLSNNRITKIPGSLFTG 61
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
LT L +++L F I+ + GL+SL + L IT+ T L+ +T DL
Sbjct: 62 LTMLTTLSLQFNHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQTDLSYN 121
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
++T A L L++ +T DL++LT L+L+ N T + +
Sbjct: 122 KLTSLSANAFTGLTALAQLDLSMNQITSIHATAFSDLTALTQLSLTNNIIRTIPS-SAFT 180
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
GLT L +LN+ + T+ L L L+L +C +T
Sbjct: 181 GLTALNTLNLGGNLFTAIPANAFTGLSALNYLSLFACLIT 220
>gi|300691489|ref|YP_003752484.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299078549|emb|CBJ51205.2| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum PSI07]
Length = 533
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 170/371 (45%), Gaps = 5/371 (1%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L LD + C I+ G+ HL L L L+ R + I +G + A L LD+
Sbjct: 139 ASLTELDLSRCRGPITAAGIAHLSHLP-LVRLNVR-DQRIGVEGARLLANHPTLTSLDVS 196
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L +L +L++ N I K L+ L SL IS + + D G
Sbjct: 197 NGRIGPEGARALADNTRLTTLSVS-HNRIGAEGAKALAASETLTSLDISENGIGDEGACA 255
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L KLT LN+ + +L+A +L L++ + D+G + L LN+
Sbjct: 256 LATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNV 315
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
+ + + L L SL +DS IGD G L T+L ++++ GIS +
Sbjct: 316 ERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQA 375
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
LA ++L +LNL I D G A ++ T L L + ++D+GA L K + +L+
Sbjct: 376 LAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATILAASKTMTTLDA 435
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+ DAG + + +LT L++ N + + ++ T L SL++ N+R+T AG+R
Sbjct: 436 GDNTIRDAGARALAANRTLTTLDVRSN-EIENAGARALAANTWLASLDLRNNRVTEAGVR 494
Query: 440 HLKPLKNLRSL 450
L + L SL
Sbjct: 495 ALLANRTLSSL 505
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 122/416 (29%), Positives = 197/416 (47%), Gaps = 23/416 (5%)
Query: 72 SGLIHLKDCSNLQSLD-FNFCIQISDGGLEHLRGL-SNLTSLSFRR-NNAITAQGMKAFA 128
+GL +K N +L+ +D LRGL ++LT L R ITA G+ +
Sbjct: 106 AGLAGVKRAGNYPALEKLTLIGPFTD---NDLRGLPASLTELDLSRCRGPITAAGIAHLS 162
Query: 129 GLINLVKLDLERCTRI--HGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L LV+L++ R RI G L N L L+ N + I + L+ T L +
Sbjct: 163 HLP-LVRLNV-RDQRIGVEGARLLANHPTLTSLDVSNGR----IGPEGARALADNTRLTT 216
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLE--GCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L +S +++ G L + LT L++ G AC +L+ L LN+NR ++
Sbjct: 217 LSVSHNRIGAEGAKALAASETLTSLDISENGIGDEGAC--ALATNTKLTTLNVNRNRIGV 274
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNL 302
+G + + +L L++G N+I DE + L L +LN++ +G +G+ L L
Sbjct: 275 EGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERTRVGADGVGALAASKTL 334
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
S+ + I D R LA +SL +L++++ I+ G AL + T LT L+L I D
Sbjct: 335 TSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGYNGIGD 394
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
+GA L SL + GL+DAG + ++T L+ N + D ++
Sbjct: 395 AGAQAWSANTTLISLSVRRNGLSDAGATILAASKTMTTLDAGDNT-IRDAGARALAANRT 453
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR-LQSRDLPNL-VSF 476
L +L+V ++ I +AG R L L SL L + +VT ++ L +R L +L VSF
Sbjct: 454 LTTLDVRSNEIENAGARALAANTWLASLDLRNNRVTEAGVRALLANRTLSSLGVSF 509
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 158/344 (45%), Gaps = 15/344 (4%)
Query: 77 LKDCSNLQSLDFNFCIQISDG--GLEHLRGLSN---LTSLSFRRNNAITAQGMKAFAGLI 131
L + L SLD +S+G G E R L++ LT+LS N I A+G KA A
Sbjct: 184 LANHPTLTSLD------VSNGRIGPEGARALADNTRLTTLSVSHNR-IGAEGAKALAASE 236
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L LD+ G L KL +LN+ N I K L+ L SL I +
Sbjct: 237 TLTSLDISENGIGDEGACALATNTKLTTLNVN-RNRIGVEGAKALAAGEALTSLDIGGND 295
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+ D G+ L +LT LN+E V A + +L+A +L L ++ + D G +
Sbjct: 296 IGDEGVRALAANARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATN 355
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
SL L++ N I+ L T L +LNL GIGD G + T L S+++ G
Sbjct: 356 TSLTTLHIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNG 415
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
+SD LA ++ +L+ I D G AL + LT LD+ I ++GA L
Sbjct: 416 LSDAGATILAASKTMTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAAN 475
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
L SL++ +T+AGV+ + L++ TL +L + N K E
Sbjct: 476 TWLASLDLRNNRVTEAGVRAL--LANRTLSSLGVSFNYCSKPTE 517
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 151/331 (45%), Gaps = 13/331 (3%)
Query: 114 RRNNAITAQGMKAFA-GLINLVKLDLER-CTRIHGGLVNLK---GLMKLESLNIKWCNCI 168
RR+ + Q ++A + L V+ D+ + R GL +K LE L +
Sbjct: 72 RRSKPLAVQRLRAVSKPLKAAVEADMRQLVIRDRAGLAGVKRAGNYPALEKLTL--IGPF 129
Query: 169 TDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
TD+D++ L +L L +S C +T +GIA+L L L LN+ + L+
Sbjct: 130 TDNDLRGLPA--SLTELDLSRCRGPITAAGIAHLSHL-PLVRLNVRDQRIGVEGARLLAN 186
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+L L+++ ++ +G + L L++ N I E L L SL++
Sbjct: 187 HPTLTSLDVSNGRIGPEGARALADNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISEN 246
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
GIGDEG L T L ++N++ I + LA +L SL++ I D G+ AL +
Sbjct: 247 GIGDEGACALATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAA 306
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT L++ R+ G L K L SL I + DAG + + +SLT L++ N
Sbjct: 307 NARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESN 366
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
++ + ++ T L +LN+ + I AG
Sbjct: 367 -GISPAGAQALAANTTLTTLNLGYNGIGDAG 396
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 136/299 (45%), Gaps = 6/299 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+D+S + + D G L + L +L+ N +I G + L LTSL N+
Sbjct: 237 TLTSLDISENGIGDEGACALATNTKLTTLNVNRN-RIGVEGAKALAAGEALTSLDIGGND 295
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G++A A L L++ER G+ L L SL I N I D+ + L+
Sbjct: 296 -IGDEGVRALAANARLTTLNVERTRVGADGVGALAASKTLTSLRID-SNNIGDAGARALA 353
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
T+L +L I + ++ +G L LT LNL + A + SA +L L++ R
Sbjct: 354 TNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRR 413
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
LSD G + ++ L+ G N I D L L +L++ S I + G L
Sbjct: 414 NGLSDAGATILAASKTMTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALA 473
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD---ARQITDTGLAALTSLTGLTHL 353
T L S++L +++ +R L +L SL + + T++ L A + G+T L
Sbjct: 474 ANTWLASLDLRNNRVTEAGVRALLANRTLSSLGVSFNYCSKPTESALMAWATRNGVTIL 532
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 3/230 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ G +L S+D+ G+D+ D G+ L + L +L+ ++ G+ L LTSL
Sbjct: 281 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 339
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I G +A A +L L +E G L L +LN+ + N I D+
Sbjct: 340 DSNN-IGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 397
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ S T L SL + + ++D+G L + +T L+ + A +L+A +L L
Sbjct: 398 QAWSANTTLISLSVRRNGLSDAGATILAASKTMTTLDAGDNTIRDAGARALAANRTLTTL 457
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ ++ + G + L L+L N +T+ + L L SL +
Sbjct: 458 DVRSNEIENAGARALAANTWLASLDLRNNRVTEAGVRALLANRTLSSLGV 507
>gi|343413823|emb|CCD21194.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 707
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 143/429 (33%), Positives = 227/429 (52%), Gaps = 46/429 (10%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L + S+L++L +
Sbjct: 228 SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLGLSH 282
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT G+ +
Sbjct: 283 CTGITD--VSPLSELSSLRTLDLSHCTGIT--DVSPLSELSSLRTLDLSHCT----GITD 334
Query: 151 LKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLT 207
+ L KL SL + + C +D+ PLS L++L++L S C+ +TD S ++ L GL+ L
Sbjct: 335 VSPLSKLSSLRTLYFLYCTGITDVSPLSELSSLRTLYFSHCTGITDVSPLSELSGLRMLY 394
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITD 266
L + G +T + LS SL L+ + C D SK+ SL+ L+L ITD
Sbjct: 395 LSHCTG--ITD--VSPLSVFSSLRMLDFSHCTGITD-VSPLSKLSSLRTLDLSHCTGITD 449
Query: 267 ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLS 324
+ L L++L +L+L C GI D + L+ L++L +++LS TGI+D S L+ LS
Sbjct: 450 --VSPLSELSSLHTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITDVS--PLSELS 503
Query: 325 SLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG- 381
SL +L+L ITD ++ L+ L+ L LDL ITD + L F +L +L++
Sbjct: 504 SLCTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSEFSSLHTLDLSHC 559
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
G+TD V + +LSSL +LNLS +TD + +S + L +L++S+ G+ +
Sbjct: 560 TGITD--VSPLSELSSLRMLNLSHCTGITD--VSPLSEFSSLHTLDLSH----CTGITDV 611
Query: 442 KPLKNLRSL 450
PL L SL
Sbjct: 612 SPLSKLSSL 620
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 125/382 (32%), Positives = 195/382 (51%), Gaps = 38/382 (9%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L++LD + C I+D + L LS+L +L IT + + L +L L
Sbjct: 177 LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGIT--DVSPLSKLSSLRTL 232
Query: 137 DLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
DL CT G+ ++ L KL SL + +C +D+ PLS L++L++L +S C+ +TD
Sbjct: 233 DLSHCT----GITDVSPLSKLSSLRTLDLSHCTGITDVSPLSELSSLRTLGLSHCTGITD 288
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
++ L L L L+L C + LS L SL L+L+ C D SK+ SL
Sbjct: 289 --VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSKLSSL 344
Query: 255 KVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TG 311
+ L + ITD + L L++L +L C GI D + L+ L+ L + LS TG
Sbjct: 345 RTLYFLYCTGITD--VSPLSELSSLRTLYFSHCTGITD--VSPLSELSGLRMLYLSHCTG 400
Query: 312 ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLR 369
I+D S L+ SSL+ L+ ITD ++ L+ L+ L LDL ITD + L
Sbjct: 401 ITDVS--PLSVFSSLRMLDFSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLS 454
Query: 370 NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+L +L++ G+TD V + +LSSL L+LS +TD + +S L+ L +L++
Sbjct: 455 ELSSLHTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLCTLDL 510
Query: 429 SNSRITSAGLRHLKPLKNLRSL 450
S+ G+ + PL L SL
Sbjct: 511 SH----CTGITDVSPLSELSSL 528
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 111/213 (52%), Gaps = 28/213 (13%)
Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLE 303
S SL++L L ITD + L L++L +L+L C GI D + L+ ++LE
Sbjct: 14 SPLSVFSSLRMLYLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSVFSSLE 69
Query: 304 SINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR--- 359
++LS TGI+D S L+ LSSL++L+L TG+ ++ L+ L+ L G
Sbjct: 70 KLDLSHCTGITDVS--PLSKLSSLRTLDLSHC----TGITDVSPLSKLSSLHTLGLSHCT 123
Query: 360 -ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
ITD + L +L +L++ G+TD V + +LSSL L LS +TD + +
Sbjct: 124 GITD--VSPLSKLSSLHTLDLSHCTGITD--VSPLSELSSLRTLGLSHCTGITD--VSPL 177
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
S L+ L +L++S+ G+ + PL L SL
Sbjct: 178 SELSSLRTLDLSH----CTGITDVSPLSKLSSL 206
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 13/144 (9%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+ SSL ++DLS + +TD + L + S+L +LD + C I+D + L LS+L L+
Sbjct: 523 SELSSLRTLDLSHCTGITD--VSPLSEFSSLHTLDLSHCTGITD--VSPLSELSSLRMLN 578
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITDS 171
IT + + +L LDL CT G+ ++ L KL SL+I +C +
Sbjct: 579 LSHCTGIT--DVSPLSEFSSLHTLDLSHCT----GITDVSPLSKLSSLHILGLSHCTGIT 632
Query: 172 DMKPLSGLTNLKSLQIS-CSKVTD 194
D+ PL+ + + L +S C+ +TD
Sbjct: 633 DVSPLTTIIGFEKLYLSNCTGITD 656
>gi|443729605|gb|ELU15470.1| hypothetical protein CAPTEDRAFT_224593 [Capitella teleta]
Length = 858
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 182/393 (46%), Gaps = 44/393 (11%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++++ + +L+ + L +L F LQ L L YP ++ + I + L
Sbjct: 444 LPANVAEGLLKQLMKEKLLRPKTLHPFIPSHLQTLLLDYYPYATNELLHEIRLH-NCLAH 502
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L S +TD GL + L+ L+ C Q++D L +R L NL L + ++
Sbjct: 503 LSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILE-STGVS 561
Query: 121 AQGMKAF--AGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
+GM+ L +LV LDL + T++ + NL K KL LN++ S++ LS
Sbjct: 562 DRGMQELFHQPLTSLVNLDLSK-TQVTHRIFNLAKNAPKLSHLNLE------QSEVASLS 614
Query: 178 GLTNL--KSLQISCSK-VTDS---------------------GIAYLKGLQKLTLLNLEG 213
G+ L +SL +S +K VTDS G L+ LQ L LL
Sbjct: 615 GVKELCLQSLNLSHTKIVTDSLLCLSGCDIRALNISNTPNIEGDLGLEYLQSLKLLQHLS 674
Query: 214 CPVTAACLD---SLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
P + D + L L+L N + DDG KI SL+ L L +ITD L
Sbjct: 675 LPSRLSLSDHGLQFTTAMPLVLLDLTNYLNVGDDGMRHIGKITSLRRLLLCNTKITDGGL 734
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSL--RKLAGLSSLK 327
+ L+GL NLE ++LD I DEG + T L+ ++L+ TGIS+ L + L L
Sbjct: 735 LFLRGLVNLEEISLDRTAITDEGACVVEAFTRLQQLSLTETGISNAFLEHQSLNPCYLLS 794
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LNL I+D G+ L L LT L+L RI
Sbjct: 795 KLNLSRTAISDKGVRCL-RLPNLTLLNLDHTRI 826
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 163/333 (48%), Gaps = 30/333 (9%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L L++K C+ ITD ++ +S L LK L ++ C+++TD+ + ++ L L +L LE
Sbjct: 500 LAHLSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILESTG 559
Query: 216 VTAACLDSL--SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
V+ + L L SL L+L++ Q++ L LNL +E+ L
Sbjct: 560 VSDRGMQELFHQPLTSLVNLDLSKTQVTHRIFNLAKNAPKLSHLNLEQSEVAS-----LS 614
Query: 274 GLTNL--ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
G+ L +SLNL I + L+ L+G ++ ++N+S T +G L GL L+SL L
Sbjct: 615 GVKELCLQSLNLSHTKIVTDSLLCLSG-CDIRALNISNTPNIEGDL----GLEYLQSLKL 669
Query: 332 -------DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGG 383
++D GL T++ L LDL + D G ++ +LR L +C
Sbjct: 670 LQHLSLPSRLSLSDHGLQFTTAMP-LVLLDLTNYLNVGDDGMRHIGKITSLRRLLLCNTK 728
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH--L 441
+TD G+ ++ L +L ++L + +TD+ ++ T L L+++ + I++A L H L
Sbjct: 729 ITDGGLLFLRGLVNLEEISLDRTA-ITDEGACVVEAFTRLQQLSLTETGISNAFLEHQSL 787
Query: 442 KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
P L L L ++ ++ L+ LPNL
Sbjct: 788 NPCYLLSKLNLSRTAISDKGVRCLR---LPNLT 817
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 156/334 (46%), Gaps = 40/334 (11%)
Query: 133 LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L L L+ C+ I GL ++ L +L+ LN+ C +TD+ + + L NL+ L + +
Sbjct: 500 LAHLSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILESTG 559
Query: 192 VTDSGIAYL--KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKF 248
V+D G+ L + L L L+L VT + L +LNL + +++ G ++
Sbjct: 560 VSDRGMQELFHQPLTSLVNLDLSKTQVTHRIFNLAKNAPKLSHLNLEQSEVASLSGVKEL 619
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLTNLESIN 306
L+ LNL +I + L+ L G ++ +LN+ + GD GL L L L+ ++
Sbjct: 620 C----LQSLNLSHTKIVTDSLLCLSG-CDIRALNISNTPNIEGDLGLEYLQSLKLLQHLS 674
Query: 307 -----------LSFT--------------GISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
L FT + D +R + ++SL+ L L +ITD GL
Sbjct: 675 LPSRLSLSDHGLQFTTAMPLVLLDLTNYLNVGDDGMRHIGKITSLRRLLLCNTKITDGGL 734
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH--IKDLSSLT 399
L L L + L ITD GA + F L+ L + G+++A ++H + L+
Sbjct: 735 LFLRGLVNLEEISLDRTAITDEGACVVEAFTRLQQLSLTETGISNAFLEHQSLNPCYLLS 794
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
LNLS+ ++DK + + L L LN+ ++RI
Sbjct: 795 KLNLSRTA-ISDKGVRCLR-LPNLTLLNLDHTRI 826
>gi|290993458|ref|XP_002679350.1| leucine rich repeat protein [Naegleria gruberi]
gi|284092966|gb|EFC46606.1| leucine rich repeat protein [Naegleria gruberi]
Length = 528
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 118/404 (29%), Positives = 189/404 (46%), Gaps = 22/404 (5%)
Query: 83 LQSLDFNFCI----QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+ + FNF I + H + + + L + N I K F NL +LDL
Sbjct: 79 MTRIKFNFRISERREWKKLSQSHQKYIDRVECLHLKYNLLIFTIIQKRFY---NLRELDL 135
Query: 139 --ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+ C R G+ LK L L LN+ C + +K + + NL SL IS + +
Sbjct: 136 SGQNCYR--EGVKCLKSLKHLTVLNVSKTKCA--NGVKYIGMIENLTSLNISSVHLENQD 191
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
+ +L L+KLT L++ C +T D +S L SL +L++ L G S + SL+
Sbjct: 192 VEHLSSLKKLTSLDVNNCNLTFEDADIISRLKSLTFLDIGNNDLGPLGLLPISSMESLQT 251
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS----FTGI 312
L++ I E L + NL L + G+EGL ++ + NL +++ +
Sbjct: 252 LHINRIWIESESCESLTKMINLTELYISKNDFGNEGLKWISSMKNLRVLDIGNHSIIDAL 311
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
D + + +A L+ L LN+ +IT +G LTSLT LT L + G I D + + K
Sbjct: 312 GDEAAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICDDFLDSISSLK 371
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
L L I GG ++ GVK I L LT+L++S+ + L+ + + L SL++S +
Sbjct: 372 ELTYLNISGGQISVKGVKSISKLPRLTILDISECVGCCSEVLKQLGLMKQLTSLHLSLTD 431
Query: 433 ITSA--GLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+ + G ++ K L NL L + C + N IK + LPNL
Sbjct: 432 LVESVEGFKYWHKNLINLTYLEMNFCGLDDNAIKWISG--LPNL 473
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 160/347 (46%), Gaps = 35/347 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDG------------------ 97
+L S+++S + + + HL L SLD N C + D
Sbjct: 175 ENLTSLNISSVHLENQDVEHLSSLKKLTSLDVNNCNLTFEDADIISRLKSLTFLDIGNND 234
Query: 98 ----GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
GL + + +L +L R I ++ ++ +INL +L + + + GL +
Sbjct: 235 LGPLGLLPISSMESLQTLHINR-IWIESESCESLTKMINLTELYISKNDFGNEGLKWISS 293
Query: 154 LMKLESLNI---KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+ L L+I + + D K ++ LT L L IS ++T SG YL L KLT L
Sbjct: 294 MKNLRVLDIGNHSIIDALGDEAAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLF 353
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT---DE 267
++G + LDS+S+L L YLN++ Q+S G + SK+ L +L++ E E
Sbjct: 354 IDGNEICDDFLDSISSLKELTYLNISGGQISVKGVKSISKLPRLTILDIS--ECVGCCSE 411
Query: 268 CLVHLKGLTNLESLNLDSCGIGD--EGLVNL-TGLTNLESINLSFTGISDGSLRKLAGLS 324
L L + L SL+L + + EG L NL + ++F G+ D +++ ++GL
Sbjct: 412 VLKQLGLMKQLTSLHLSLTDLVESVEGFKYWHKNLINLTYLEMNFCGLDDNAIKWISGLP 471
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
+LK L+L + +TD + L + L +L LFG +T+ L +
Sbjct: 472 NLKYLDLQSNDLTDDCIQHLLGMKKLEYLSLFGNNMTEKKTKRLEKY 518
>gi|290978242|ref|XP_002671845.1| predicted protein [Naegleria gruberi]
gi|284085417|gb|EFC39101.1| predicted protein [Naegleria gruberi]
Length = 439
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 165/361 (45%), Gaps = 28/361 (7%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +D+S ++++D + H + ++L +L N C I G + L L+ LT L+ NN
Sbjct: 101 NLTRIDISDNEISDERVKHFGNLTHLTNLVIN-CNDIGVEGAKCLCQLNQLTRLNIG-NN 158
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ +G K + L NL KLD+ R NCI D + ++
Sbjct: 159 SLETEGAKYISELKNLTKLDIAR-------------------------NCIGDRGAQFIT 193
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ L SL ++ + + G ++ + +LT L++ + + +S L L L +
Sbjct: 194 EMKQLTSLNLNRNGIEYLGAKFISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYD 253
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ D+G S++ L L++ N+I E + L L +LN+ S IG+ G +++
Sbjct: 254 NNIGDEGAMHISEMKQLTNLDISRNDIDSEGAKSICELYQLTNLNICSNYIGETGAKHIS 313
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
+ NL + + I ++ + L L + A I + G ++ + LT LD++
Sbjct: 314 EMNNLTILEIGSNEIGSEGAYHISRMHQLTRLMIFANDIGEKGAKHVSEMKQLTKLDIYD 373
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
I D G ++ K L L++ + G ++I+ L+ LT LN+ N + +D ELI
Sbjct: 374 NNIGDEGTIHISEMKQLTYLDVSANNIGHEGAEYIRKLNRLTFLNVHYN-SFSDSESELI 432
Query: 418 S 418
Sbjct: 433 E 433
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 155/325 (47%), Gaps = 5/325 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIK 163
L NLT + +N I+ + +K F L +L L + C I G L L +L LNI
Sbjct: 99 LKNLTRIDIS-DNEISDERVKHFGNLTHLTNLVI-NCNDIGVEGAKCLCQLNQLTRLNIG 156
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N + K +S L NL L I+ + + D G ++ +++LT LNL +
Sbjct: 157 -NNSLETEGAKYISELKNLTKLDIARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLGAKF 215
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L L+++ + +G ++ SK+ L L + N I DE +H+ + L +L++
Sbjct: 216 ISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTNLDI 275
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
I EG ++ L L ++N+ I + + ++ +++L L + + +I G
Sbjct: 276 SRNDIDSEGAKSICELYQLTNLNICSNYIGETGAKHISEMNNLTILEIGSNEIGSEGAYH 335
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT L +F I + GA ++ K L L+I + D G HI ++ LT L++
Sbjct: 336 ISRMHQLTRLMIFANDIGEKGAKHVSEMKQLTKLDIYDNNIGDEGTIHISEMKQLTYLDV 395
Query: 404 SQNCNLTDKTLELISGLTGLVSLNV 428
S N N+ + E I L L LNV
Sbjct: 396 SAN-NIGHEGAEYIRKLNRLTFLNV 419
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 1/208 (0%)
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
C+ F + +L +++ NEI+DE + H LT+L +L ++ IG EG L L L
Sbjct: 93 CQIFECLKNLTRIDISDNEISDERVKHFGNLTHLTNLVINCNDIGVEGAKCLCQLNQLTR 152
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+N+ + + ++ L +L L++ I D G +T + LT L+L I G
Sbjct: 153 LNIGNNSLETEGAKYISELKNLTKLDIARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLG 212
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
A ++ L SL+I + G K I L LT L + N N+ D+ IS + L
Sbjct: 213 AKFISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYDN-NIGDEGAMHISEMKQLT 271
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+L++S + I S G + + L L +L +
Sbjct: 272 NLDISRNDIDSEGAKSICELYQLTNLNI 299
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 112/237 (47%), Gaps = 7/237 (2%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTNLES 280
L +L ++++ ++SD+ + F + L L + N+I E CL L LT
Sbjct: 96 FECLKNLTRIDISDNEISDERVKHFGNLTHLTNLVINCNDIGVEGAKCLCQLNQLT---R 152
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
LN+ + + EG ++ L NL ++++ I D + + + L SLNL+ I G
Sbjct: 153 LNIGNNSLETEGAKYISELKNLTKLDIARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLG 212
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
++ + LT LD+ I GA + L L I + D G HI ++ LT
Sbjct: 213 AKFISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTN 272
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L++S+N ++ + + I L L +LN+ ++ I G +H+ + NL L + S ++
Sbjct: 273 LDISRN-DIDSEGAKSICELYQLTNLNICSNYIGETGAKHISEMNNLTILEIGSNEI 328
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 31/223 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S +D+ G + L L + + I D G H+ + LT+L
Sbjct: 217 SEMYQLTSLDISNNDIGSEGAKQISKLDQLTKL-YIYDNNIGDEGAMHISEMKQLTNLDI 275
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--------------------------G 147
RN+ I ++G K+ L L L++ C+ G G
Sbjct: 276 SRND-IDSEGAKSICELYQLTNLNI--CSNYIGETGAKHISEMNNLTILEIGSNEIGSEG 332
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
++ + +L L I + N I + K +S + L L I + + D G ++ +++LT
Sbjct: 333 AYHISRMHQLTRLMI-FANDIGEKGAKHVSEMKQLTKLDIYDNNIGDEGTIHISEMKQLT 391
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
L++ + + + L L +LN++ SD E K
Sbjct: 392 YLDVSANNIGHEGAEYIRKLNRLTFLNVHYNSFSDSESELIEK 434
>gi|326487896|dbj|BAJ89787.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 145/485 (29%), Positives = 227/485 (46%), Gaps = 70/485 (14%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + ++ + + L +VDLS D L S L+ L+ C
Sbjct: 106 VRQVCLARASGVGWRGLEALVAACPRLEAVDLSHCVGAGDREAAALAAASGLRELNLEKC 165
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
+ ++D GL + G L +LSF+ I+ G+ +L LD+ + L
Sbjct: 166 LGVTDMGLAKVAVGCPRLETLSFKWCREISDIGVDLLVKKCRDLRSLDISYLKVSNESLR 225
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KGL 203
++ L KLE L + C+CI D ++ LS G +L+S+ +S C+ VT G+A L L
Sbjct: 226 SISTLEKLEELAMVACSCIDDEGLELLSRGSNSLQSVDVSRCNHVTSQGLASLIDGHSFL 285
Query: 204 QKL------------------------TLLNLEGCPVTAACLDSLSALGS----LFYLNL 235
QKL T+L L+G V+++ LSA+G L + L
Sbjct: 286 QKLNAADSLHEIGQNFLSKLVTLKATLTVLRLDGFEVSSS---LLSAIGEGCTNLVEIGL 342
Query: 236 NRCQ-LSDDG-------CEKFSKIGSLKVLNLGFNE----ITDECLVHLKGLTNLESLNL 283
++C ++D+G C KI L NL N+ I D C + LE L L
Sbjct: 343 SKCNGVTDEGISSLVARCSYLRKI-DLTCCNLVTNDSLDSIADNCKM-------LECLRL 394
Query: 284 DSCG-IGDEGLVNLTGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTG 340
+SC I ++GL + NL+ I+L+ G++D +L LA S L L L + I+D G
Sbjct: 395 ESCSSINEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLILKLGLSSSISDKG 454
Query: 341 LAALTSLTG-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGVKHIKDLS 396
L ++S G L LDL+ + ITD G A L N K ++ L +C +TD+G+ H+ L
Sbjct: 455 LGFISSKCGKLIELDLYRCSSITDDGLAALANGCKKIKLLNLCYCNKITDSGLSHLGALE 514
Query: 397 SLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLE 453
LT L L +T + ++ G LV L++ + +GL L NLR LT+
Sbjct: 515 ELTNLELRCLVRITGIGISSVVIGCKSLVELDLKRCYSVNDSGLWALARYALNLRQLTIS 574
Query: 454 SCKVT 458
C+VT
Sbjct: 575 YCQVT 579
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 126/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K ++ IAS +L +DL+ V D L HL CS L L ISD GL +
Sbjct: 400 INEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLILKLGLSSSISDKGLGFIS 459
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R ++IT G+ A A G K++ LN+
Sbjct: 460 SKCGKLIELDLYRCSSITDDGLAALA-----------------------NGCKKIKLLNL 496
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITDS + L L L +L++ C ++T GI+ + + GC
Sbjct: 497 CYCNKITDSGLSHLGALEELTNLELRCLVRITGIGISSV----------VIGCK------ 540
Query: 222 DSLSALGSLFYLNLNRC-QLSDDGCEKFSKIG-SLKVLNLGFNEITDECLVHLKGLTNLE 279
SL L+L RC ++D G ++ +L+ L + + ++T L HL L++L
Sbjct: 541 -------SLVELDLKRCYSVNDSGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 591
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L D +V+L+ ++ +E ++ G L+KL L LKS+
Sbjct: 592 CLQ-------DVKMVHLSWVS-IEGFEMALRAAC-GRLKKLKILGGLKSV 632
>gi|413949465|gb|AFW82114.1| hypothetical protein ZEAMMB73_510951 [Zea mays]
Length = 606
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 118/475 (24%), Positives = 205/475 (43%), Gaps = 65/475 (13%)
Query: 15 VYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSG 73
V+ R + EV L F VN +W+ + S L + L+ ++ +
Sbjct: 69 VFGRSVEEVDLSGFL-------------SVNSEWLAYLGS-FRYLRVLKLADCKNINNDA 114
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ L + L+ LD + C +ISD G++H+ + +L L +T G+ + L NL
Sbjct: 115 VWSLSGMNTLKELDLSRCKKISDAGIKHIVTIESLEKLHLSETE-LTDNGVMLISSLTNL 173
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
LDL L +L+ L KLE L+I W + T+ L L SL ++ ++V
Sbjct: 174 SFLDLGGILMTDKTLQSLQVLTKLEHLDI-WGSETTNEGASALKSFARLLSLNLALTRVN 232
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAAC-------------LDSLSALG------------ 228
I + LN+ C + + C + S + G
Sbjct: 233 HLSIP-----PTTSYLNMSNCEIHSICDVDSEVPVPLENFIVSAATFGNIDKVFSSIQAS 287
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCG 287
SL +L+L+ C+LS+ K+ +L+ L+L +N ITD + H+ + TNL+ L+L + G
Sbjct: 288 SLIHLDLSSCKLSN--LSFLEKMKNLEHLDLSYNIITDGAIEHIAKIGTNLQYLSLKNTG 345
Query: 288 IGDEGLVNLTG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
I + L L G + NL S++L+ T I D +L + + L++++L TS
Sbjct: 346 ITSQALCILAGTVPNLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQ-----------TS 394
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ G H ++ ++ A + K L SL + L+ + + ++L L L +
Sbjct: 395 IKGFIHTEVNSEKLLSMSA--FEHLKYLESLNLEDTPLSAEVIPPLASFATLKYLYLKSD 452
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
L+D L +S + L+ L + ++S GL P L L L C + D
Sbjct: 453 F-LSDPALHALSAASNLIHLGFRGNILSSFGLLQFVPPVTLCVLDLSGCWILTGD 506
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 169/363 (46%), Gaps = 34/363 (9%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
++ ++ + L L L C I+ V +L G+ L+ L++ C I+D+ +K +
Sbjct: 84 SVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLSRCKKISDAGIKHI 143
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ +L+ L +S +++TD+G+ + L L+ L+L G +T L SL L L +L++
Sbjct: 144 VTIESLEKLHLSETELTDNGVMLISSLTNLSFLDLGGILMTDKTLQSLQVLTKLEHLDIW 203
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ +++G L LNL + HL LN+ +C I V+
Sbjct: 204 GSETTNEGASALKSFARLLSLNLALTRVN-----HLSIPPTTSYLNMSNCEIHSICDVDS 258
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
LE N + + G++ K+ SS+++ + L HLDL
Sbjct: 259 EVPVPLE--NFIVSAATFGNIDKV--FSSIQA-------------------SSLIHLDLS 295
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLE 415
++ S ++L KNL L++ +TD ++HI + ++L L+L +N +T + L
Sbjct: 296 SCKL--SNLSFLEKMKNLEHLDLSYNIITDGAIEHIAKIGTNLQYLSL-KNTGITSQALC 352
Query: 416 LISG-LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
+++G + L SL+++N++I + L ++ + LR++ L + + S L ++
Sbjct: 353 ILAGTVPNLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQTSIKGFIHTEVNSEKLLSMS 412
Query: 475 SFR 477
+F
Sbjct: 413 AFE 415
>gi|290991127|ref|XP_002678187.1| predicted protein [Naegleria gruberi]
gi|284091798|gb|EFC45443.1| predicted protein [Naegleria gruberi]
Length = 265
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 124/246 (50%), Gaps = 3/246 (1%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+K L +L+SL I+ I D++ G L L SL IS C + + G+ ++ L KLT
Sbjct: 10 MKKLNQLKSLKIR-SKFIFGEDLRSYIGELKQLNSLNISDCINIGNRGVNVIRELDKLTE 68
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L+++ C + + A+ L L++N C L G K+ + L + N I+D
Sbjct: 69 LHIDNCCIGEKGAKKIGAMQQLRTLSINGCGLGKKGVASVCKLKDMTKLGIRKNHISDSL 128
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
+ + +T L L+ IG EG +++ +TNL+++ L F I ++ ++G+ L S
Sbjct: 129 ALEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFNDIGKEGVKYISGMKQLIS 188
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
LN+ I D G+ +++ + LT L + I D GA Y+ NL L+I LT G
Sbjct: 189 LNISENDIRDKGVKSISEMKNLTCLSVRSNSIGDEGAKYISEMSNLTQLDISCNVLTQKG 248
Query: 389 VKHIKD 394
+K +++
Sbjct: 249 IKLLQE 254
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 111/218 (50%), Gaps = 6/218 (2%)
Query: 239 QLSDDGCEKFSKIGSLKVLN-LGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 296
+LS + +K +++ SLK+ + F E + ++ L L SLN+ C IG+ G+ +
Sbjct: 4 ELSSNFMKKLNQLKSLKIRSKFIFGE---DLRSYIGELKQLNSLNISDCINIGNRGVNVI 60
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L L +++ I + +K+ + L++L+++ + G+A++ L +T L +
Sbjct: 61 RELDKLTELHIDNCCIGEKGAKKIGAMQQLRTLSINGCGLGKKGVASVCKLKDMTKLGIR 120
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+DS A + L L+ + G K I +++L L L N ++ + ++
Sbjct: 121 KNHISDSLALEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFN-DIGKEGVKY 179
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
ISG+ L+SLN+S + I G++ + +KNL L++ S
Sbjct: 180 ISGMKQLISLNISENDIRDKGVKSISEMKNLTCLSVRS 217
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 3/213 (1%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
++ + L SL+ + CI I + G+ +R L LT L N I +G K + L
Sbjct: 34 YIGELKQLNSLNISDCINIGNRGVNVIRELDKLTELHID-NCCIGEKGAKKIGAMQQLRT 92
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L + C G+ ++ L + L I+ N I+DS +S +T L L + +
Sbjct: 93 LSINGCGLGKKGVASVCKLKDMTKLGIRK-NHISDSLALEISQMTKLTELDAGVNDIGPE 151
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G + + L L L+ + + +S + L LN++ + D G + S++ +L
Sbjct: 152 GAKSISQMTNLKTLLLDFNDIGKEGVKYISGMKQLISLNISENDIRDKGVKSISEMKNLT 211
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L++ N I DE ++ ++NL L++ SC +
Sbjct: 212 CLSVRSNSIGDEGAKYISEMSNLTQLDI-SCNV 243
>gi|46447283|ref|YP_008648.1| hypothetical protein pc1649 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400924|emb|CAF24373.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 521
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 101/178 (56%), Gaps = 3/178 (1%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S +TD+GL L +NLQ L+ N C +++D GL HL L NL L + +T++G+
Sbjct: 324 SCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGL 383
Query: 125 KAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
F LI L L+L C I GL +L L+ L+ LN+ C +TD+ + L L LK
Sbjct: 384 GHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAHLVPLVALK 443
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
L +S C+ +T++G+A+L L L LNL GC ++ A L L+ L SL +LNL C+
Sbjct: 444 HLDLSWCNSLTNAGLAHLVHLVALQYLNLSGCIYLSEAGLAHLAPLTSLQHLNLEDCE 501
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 7/226 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK LQ+ SC +TD+G+A L L L LNL GC
Sbjct: 291 EIEGLNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGC 350
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T A L L+ L +L YL+L C +L+ G F + +L+ LNL G I D L H
Sbjct: 351 KKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAH 410
Query: 272 LKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
L L L+ LNL C + D GL +L L L+ ++LS+ +++ L L L +L+ L
Sbjct: 411 LTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYL 470
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
NL +++ GLA L LT L HL+L + L +FK L
Sbjct: 471 NLSGCIYLSEAGLAHLAPLTSLQHLNLEDCEHFTNARFRLAHFKAL 516
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 113/221 (51%), Gaps = 26/221 (11%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL L L+NL L+ +T G+
Sbjct: 303 LTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLT 362
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+NL LDL C ++ GL + K L+ L+ LN+ C I D+ + L+ L L+ L +
Sbjct: 363 PLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYLNL 422
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S C+ +TD+G+A+L L L L+L C +T A L L L +L YLNL+ GC
Sbjct: 423 SQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYLNLS-------GC 475
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
S+ G L HL LT+L+ LNL+ C
Sbjct: 476 IYLSEAG----------------LAHLAPLTSLQHLNLEDC 500
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 121/229 (52%), Gaps = 9/229 (3%)
Query: 246 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTN 301
EK S ++ L F+E +TD L+ LK NL+ L L SC + D GL L LTN
Sbjct: 282 EKILNYFSNEIEGLNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTN 341
Query: 302 LESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR 359
L+ +NL+ ++D L L L +L+ L+L ++T GL SL L HL+L G +
Sbjct: 342 LQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCK 401
Query: 360 -ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
I D+G A+L L+ L + LTDAG+ H+ L +L L+LS +LT+ L +
Sbjct: 402 FIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHL 461
Query: 418 SGLTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
L L LN+S ++ AGL HL PL +L+ L LE C+ N RL
Sbjct: 462 VHLVALQYLNLSGCIYLSEAGLAHLAPLTSLQHLNLEDCEHFTNARFRL 510
>gi|326505700|dbj|BAJ95521.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 145/485 (29%), Positives = 227/485 (46%), Gaps = 70/485 (14%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + ++ + + L +VDLS D L S L+ L+ C
Sbjct: 106 VRQVCLARASGVGWRGLEALVAACPRLEAVDLSHCVGAGDREAAALAAASGLRELNLEKC 165
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
+ ++D GL + G L +LSF+ I+ G+ +L LD+ + L
Sbjct: 166 LGVTDMGLAKVAVGCPRLETLSFKWCREISDIGVDLLVKKCRDLRSLDISYLKVSNESLR 225
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KGL 203
++ L KLE L + C+CI D ++ LS G +L+S+ +S C+ VT G+A L L
Sbjct: 226 SISTLEKLEELAMVACSCIDDEGLELLSRGSNSLQSVDVSRCNHVTSQGLASLIDGHSFL 285
Query: 204 QKL------------------------TLLNLEGCPVTAACLDSLSALGS----LFYLNL 235
QKL T+L L+G V+++ LSA+G L + L
Sbjct: 286 QKLNAADSLHEIGQNFLSKLVTLKATLTVLRLDGFEVSSS---LLSAIGEGCTNLVEIGL 342
Query: 236 NRCQ-LSDDG-------CEKFSKIGSLKVLNLGFNE----ITDECLVHLKGLTNLESLNL 283
++C ++D+G C KI L NL N+ I D C + LE L L
Sbjct: 343 SKCNGVTDEGISSLVARCSYLRKI-DLTCCNLVTNDSLDSIADNCKM-------LECLRL 394
Query: 284 DSCG-IGDEGLVNLTGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTG 340
+SC I ++GL + NL+ I+L+ G++D +L LA S L L L + I+D G
Sbjct: 395 ESCSSINEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLILKLGLSSSISDKG 454
Query: 341 LAALTSLTG-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGVKHIKDLS 396
L ++S G L LDL+ + ITD G A L N K ++ L +C +TD+G+ H+ L
Sbjct: 455 LGFISSKCGKLIELDLYRCSSITDDGLAALANGCKKIKLLNLCYCNKITDSGLSHLGALE 514
Query: 397 SLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLE 453
LT L L +T + ++ G LV L++ + +GL L NLR LT+
Sbjct: 515 ELTNLELRCLVRITGIGISSVVIGCKSLVELDLKRCYSVDDSGLWALARYALNLRQLTIS 574
Query: 454 SCKVT 458
C+VT
Sbjct: 575 YCQVT 579
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 125/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K ++ IAS +L +DL+ V D L HL CS L L ISD GL +
Sbjct: 400 INEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLILKLGLSSSISDKGLGFIS 459
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R ++IT G+ A A G K++ LN+
Sbjct: 460 SKCGKLIELDLYRCSSITDDGLAALAN-----------------------GCKKIKLLNL 496
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITDS + L L L +L++ C ++T GI+ + + GC
Sbjct: 497 CYCNKITDSGLSHLGALEELTNLELRCLVRITGIGISSV----------VIGCK------ 540
Query: 222 DSLSALGSLFYLNLNRCQLSDD-GCEKFSKIG-SLKVLNLGFNEITDECLVHLKGLTNLE 279
SL L+L RC DD G ++ +L+ L + + ++T L HL L++L
Sbjct: 541 -------SLVELDLKRCYSVDDSGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 591
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L D +V+L+ ++ +E ++ G L+KL L LKS+
Sbjct: 592 CLQ-------DVKMVHLSWVS-IEGFEMALRAAC-GRLKKLKILGGLKSV 632
>gi|87309359|ref|ZP_01091495.1| hypothetical protein DSM3645_22189 [Blastopirellula marina DSM
3645]
gi|87287998|gb|EAQ79896.1| hypothetical protein DSM3645_22189 [Blastopirellula marina DSM
3645]
Length = 351
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 4/265 (1%)
Query: 127 FAGL---INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
F GL + L KL L+ L L KL+SL+++ + IT ++ L LT L+
Sbjct: 67 FRGLGEAVTLRKLSLQDVGMTDESASELAPLTKLQSLDMRGVS-ITGEALQSLGQLTELE 125
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L + D+ +A L L KL +L L+ +A L+ L L L L D+
Sbjct: 126 RLLFRGQPIRDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELYLFNTPTVDE 185
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
+K +L L L +++T + L + +LE L++ + D G + L L
Sbjct: 186 ELAVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAAEIAKLPKLT 245
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+NL T ++D SL LA L++L+ LNLDA +TD LA L ++ L L L +TD+
Sbjct: 246 DLNLWKTKVTDASLPDLAKLTTLERLNLDANDLTDANLALLAAMPNLKWLHLGSTSVTDA 305
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAG 388
G L K+L +L + +TD G
Sbjct: 306 GILELAKSKSLETLIVTRTKVTDDG 330
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 116/250 (46%), Gaps = 2/250 (0%)
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L L+L ++D+ + + + L+ L++ IT E L L LT LE L I
Sbjct: 75 TLRKLSLQDVGMTDESASELAPLTKLQSLDMRGVSITGEALQSLGQLTELERLLFRGQPI 134
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
D L L LT L+ + L T S G L L LK L L D LA LT
Sbjct: 135 RDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELYLFNTPTVDEELAVLTKFP 194
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L L G+ +T SG A L +L L++ + DAG I L LT LNL +
Sbjct: 195 ALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAAEIAKLPKLTDLNLWK-TK 253
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QS 467
+TD +L ++ LT L LN+ + +T A L L + NL+ L L S VT I L +S
Sbjct: 254 VTDASLPDLAKLTTLERLNLDANDLTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKS 313
Query: 468 RDLPNLVSFR 477
+ L L+ R
Sbjct: 314 KSLETLIVTR 323
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 127/290 (43%), Gaps = 25/290 (8%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
TD D + L L+ L + +TD + L L KL L++ G +T L SL L
Sbjct: 63 TDVDFRGLGEAVTLRKLSLQDVGMTDESASELAPLTKLQSLDMRGVSITGEALQSLGQLT 122
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L L R Q I D L L LT L+ L LD
Sbjct: 123 ELERL-LFRGQ-----------------------PIRDADLAQLAPLTKLKVLGLDDTDA 158
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
GL +L +L+ + L T D L L +L L L +T +G+A L +
Sbjct: 159 SAGGLEHLQNAHDLKELYLFNTPTVDEELAVLTKFPALAKLRLRGSDVTGSGMAELAKIG 218
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L LD+ ++ D+GAA + L L + +TDA + + L++L LNL N +
Sbjct: 219 SLEDLDVSETKVDDAGAAEIAKLPKLTDLNLWKTKVTDASLPDLAKLTTLERLNLDAN-D 277
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
LTD L L++ + L L++ ++ +T AG+ L K+L +L + KVT
Sbjct: 278 LTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIVTRTKVT 327
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 27/227 (11%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
G + D+ L L + L+ L + S GGLEHL+ +L L + N + +
Sbjct: 131 GQPIRDADLAQLAPLTKLKVLGLDDT-DASAGGLEHLQNAHDLKEL-YLFNTPTVDEELA 188
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L KL R+ G + +T S M L+ + +L+ L
Sbjct: 189 VLTKFPALAKL------RLRG-------------------SDVTGSGMAELAKIGSLEDL 223
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+S +KV D+G A + L KLT LNL VT A L L+ L +L LNL+ L+D
Sbjct: 224 DVSETKVDDAGAAEIAKLPKLTDLNLWKTKVTDASLPDLAKLTTLERLNLDANDLTDANL 283
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+ + +LK L+LG +TD ++ L +LE+L + + D+G
Sbjct: 284 ALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIVTRTKVTDDG 330
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 29/185 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L P V+++ + ++ +L + L GSDVT SG+ L +L+ LD +
Sbjct: 172 LKELYLFNTPTVDEEL--AVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSET- 228
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++ D G + L LT L+ + A L +L
Sbjct: 229 KVDDAGAAEIAKLPKLTDLNLWKTKVTDA-------------------------SLPDLA 263
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L LE LN+ N +TD+++ L+ + NLK L + + VTD+GI L + L L +
Sbjct: 264 KLTTLERLNLD-ANDLTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIVT 322
Query: 213 GCPVT 217
VT
Sbjct: 323 RTKVT 327
>gi|290974572|ref|XP_002670019.1| leucine-rich repeat protein [Naegleria gruberi]
gi|284083573|gb|EFC37275.1| leucine-rich repeat protein [Naegleria gruberi]
Length = 334
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 109/204 (53%), Gaps = 3/204 (1%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
+ L SL + GIGDEG+ ++ L L S+N+S I D ++ ++ L L SL++
Sbjct: 134 MKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLN 193
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
I G+ +++ + LT L++ RI D G + K L SL I G+ D GVK I +
Sbjct: 194 DIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISE 253
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
+ LT LN+S N + D+ ++ IS L L SLN+SN+RI + G + + +K L SL++
Sbjct: 254 MKQLTSLNISNNG-IGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLSINY 312
Query: 455 CKVTANDIKRLQSRDLPNLVSFRP 478
++ +K + D+ L S
Sbjct: 313 NQIGDEGVKSI--SDMKQLTSLNK 334
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 108/204 (52%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
++ +++LT L + + + +S L L LN++ ++ D+G + S++ L L+
Sbjct: 130 FISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLD 189
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
+ N+I E + + + L SLN++ IGDEG+ ++ L L S+N+S GI D ++
Sbjct: 190 ISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVK 249
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
++ + L SLN+ I D G+ +++ L LT L++ RI GA + K L SL
Sbjct: 250 LISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLS 309
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLN 402
I + D GVK I D+ LT LN
Sbjct: 310 INYNQIGDEGVKSISDMKQLTSLN 333
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 107/189 (56%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D +K +S L L SL +S +++ D G+ + L++LT L++ + A + S+S
Sbjct: 145 NGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLNDIGAEGVKSIS 204
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ L LN+N ++ D+G + S++ L LN+ N I DE + + + L SLN+ +
Sbjct: 205 EMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISEMKQLTSLNISN 264
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
GIGDEG+ +++ L L S+N+S I + ++ + L SL+++ QI D G+ +++
Sbjct: 265 NGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLSINYNQIGDEGVKSIS 324
Query: 346 SLTGLTHLD 354
+ LT L+
Sbjct: 325 DMKQLTSLN 333
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 108/204 (52%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS + + D G+ + L++LT LN+ + + +S L L L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+++ + +G + S++ L LN+ +N I DE + + L L SLN+ + GIGDEG+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGV 248
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
++ + L S+N+S GI D ++ ++ L L SLN+ +I G +++ + LT L
Sbjct: 249 KLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSL 308
Query: 354 DLFGARITDSGAAYLRNFKNLRSL 377
+ +I D G + + K L SL
Sbjct: 309 SINYNQIGDEGVKSISDMKQLTSL 332
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 110/205 (53%), Gaps = 2/205 (0%)
Query: 247 KF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
KF S++ L L + N I DE + + L L SLN+ + IGDEG+ ++ L L S+
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
++S I ++ ++ + L SLN++ +I D G+ ++ L LT L++ I D G
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGV 248
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
+ K L SL I G+ D GVK I +L LT LN+S N + + + IS + L S
Sbjct: 249 KLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNN-RIGAEGAKSISEMKQLTS 307
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSL 450
L+++ ++I G++ + +K L SL
Sbjct: 308 LSINYNQIGDEGVKSISDMKQLTSL 332
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 1/170 (0%)
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
++ + L S+ +S GI D ++ ++ L L SLN+ +I D G+ ++ L LT LD+
Sbjct: 131 ISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDI 190
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
I G + K L SL I + D GVK I +L LT LN+S N + D+ ++
Sbjct: 191 SLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNG-IGDEGVK 249
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
LIS + L SLN+SN+ I G++ + LK L SL + + ++ A K +
Sbjct: 250 LISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSI 299
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 28/216 (12%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D+ + +I S+ L S+++S + + D G+ + + L SLD +
Sbjct: 146 GIGDEGVKLI-SELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISL------------ 192
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
N I A+G+K+ + + L L++ G+ + L +L SLNI
Sbjct: 193 --------------NDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNI 238
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I D +K +S + L SL IS + + D G+ + L++LT LN+ + A
Sbjct: 239 S-NNGIGDEGVKLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAK 297
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
S+S + L L++N Q+ D+G + S + L LN
Sbjct: 298 SISEMKQLTSLSINYNQIGDEGVKSISDMKQLTSLN 333
>gi|290981112|ref|XP_002673275.1| predicted protein [Naegleria gruberi]
gi|284086857|gb|EFC40531.1| predicted protein [Naegleria gruberi]
Length = 461
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 123/462 (26%), Positives = 205/462 (44%), Gaps = 56/462 (12%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +D++ SD+ + + L NL+ L+ I D GLE L L LT L+ R NN
Sbjct: 4 LKRLDIASSDIGNEQVKILSQFKNLELLNLGDN-HIKDEGLELLSDLKGLTLLNIR-NNR 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
I + +++ + NL L++++ G+ + + L L LN+ C + KP+S
Sbjct: 62 I--ESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGI---TSCKPIS 116
Query: 178 -GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L LKSL I+ + + G + +++LT L++ + A +S L L L +N
Sbjct: 117 EKLQYLKSLNINRNNLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCIN 176
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++ D G E K+ L L++ +N+I + +V +TNL LNL I GLV++
Sbjct: 177 GNRIGDVGAEYIIKMKQLTFLDMQYNQI-ENVMVESSEITNLTYLNLGYNKITTNGLVSI 235
Query: 297 TGLTNLESINLSFTGISDGSL---------------------RKLAGLSSLKSLNLDARQ 335
T L L+S+ L + D +L + + ++ L SL +
Sbjct: 236 TKLDQLKSLYLHYNYYLDPNLLERMKHLKKLDISKNFTQNEFKSICEMTHLTSLIVPRNS 295
Query: 336 ITDTGLAALTSLTGLTHLDL-------FGAR-----------------ITDSGAAYLRNF 371
I TG+ ++T L LT LD+ GA I GA ++
Sbjct: 296 INKTGIQSITELKHLTELDIENNEIGTTGAEKISEMKHLLILKIDYNNICSEGARFISQL 355
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
NL +L I + G K+I +S LT L + + + D+ ++ IS LT L L+++
Sbjct: 356 PNLTALSIGANNIRTVGAKYIGQMSQLTELRIYSDYEIGDEGVKAISRLTRLTKLHINGI 415
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+T G + + LKNL L N ++ + R LP L
Sbjct: 416 GMTDEGAKSILALKNLTWLCAYWPNPYGNQVRNML-RKLPAL 456
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 124/277 (44%), Gaps = 32/277 (11%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ +LK L I+ S + + + L + L L LNL
Sbjct: 1 MKHLKRLDIASSDIGNEQVKILSQFKNLEL------------------------LNLGDN 36
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT- 297
+ D+G E S + L +LN+ N I E + + + NL LN+ IGD G+ +
Sbjct: 37 HIKDEGLELLSDLKGLTLLNIRNNRI--ESVESICKMKNLTHLNIKKNRIGDLGIEEIAE 94
Query: 298 GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L +L +N+S GI+ S + ++ L LKSLN++ + G + + LT L +
Sbjct: 95 NLNHLIYLNVSGCGIT--SCKPISEKLQYLKSLNINRNNLGSKGAQNVAEMKQLTCLSIG 152
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I GA Y+ + L +L I G + D G ++I + LT L++ N + +
Sbjct: 153 NNHIHAKGALYISRLEKLTALCINGNRIGDVGAEYIIKMKQLTFLDMQYNQ--IENVMVE 210
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
S +T L LN+ ++IT+ GL + L L+SL L
Sbjct: 211 SSEITNLTYLNLGYNKITTNGLVSITKLDQLKSLYLH 247
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 7/185 (3%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
+ +L+ L++ S IG+E + L+ NLE +NL I D L L+ L L LN+
Sbjct: 1 MKHLKRLDIASSDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNN 60
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIK 393
+I + ++ + LTHL++ RI D G + N +L L + G G+T K I
Sbjct: 61 RI--ESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGITSC--KPIS 116
Query: 394 D-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ L L LN+++N NL K + ++ + L L++ N+ I + G ++ L+ L +L +
Sbjct: 117 EKLQYLKSLNINRN-NLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCI 175
Query: 453 ESCKV 457
++
Sbjct: 176 NGNRI 180
>gi|290983896|ref|XP_002674664.1| predicted protein [Naegleria gruberi]
gi|284088255|gb|EFC41920.1| predicted protein [Naegleria gruberi]
Length = 374
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 153/338 (45%), Gaps = 31/338 (9%)
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+W N T + + + LT+L+ +I+ +++ YL L +L L++ +T + ++
Sbjct: 19 RWGNSETYNKLIMMKSLTDLRISKINFVEMS----KYLISLDQLISLDISKSLITDSIVE 74
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+S L L YLN++ + + G SK+ L L + N CL ++ + L SLN
Sbjct: 75 PISKLKQLTYLNVSDNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNMRKLTSLN 134
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
++ IG+ ++ + L S+N++ I D + L L SL + I + G+
Sbjct: 135 INGNDIGNIAFEDIIKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNGIHEEGVK 194
Query: 343 ALTSLTGLTHLDLFGA------------------------RITDSGAAYLRNFKNLRSLE 378
+ L +T LD+FG RI D GA YL L L
Sbjct: 195 FINELPQVTDLDIFGISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLSGLTKLTKLS 254
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
I ++ GVK I++L LT L++S N N+ + + +SGL L L++ + + G
Sbjct: 255 ISSNSISAIGVKFIRELKLLTFLDISIN-NIGQQGSQYVSGLDKLAHLSIHRNNLGDEGA 313
Query: 439 RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
RH+ +K L +L + ++ D L DL L SF
Sbjct: 314 RHIGDMKWLTNLDINCNSIS--DEGALYFSDLKQLTSF 349
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 114/233 (48%), Gaps = 3/233 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S++++G+D+ + + L SL+ N I I D G H+ L +LTSL+ +N
Sbjct: 130 LTSLNINGNDIGNIAFEDIIKMKQLTSLNVN-NINIGDKGAFHVGKLKHLTSLAIAKN-G 187
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G+K L + LD+ + GG + + +L LNI C I D LSG
Sbjct: 188 IHEEGVKFINELPQVTDLDIFGISFGPGGAKYIGEMKQLTKLNINSCR-IGDEGATYLSG 246
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LT L L IS + ++ G+ +++ L+ LT L++ + +S L L +L+++R
Sbjct: 247 LTKLTKLSISSNSISAIGVKFIRELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHRN 306
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L D+G + L L++ N I+DE ++ L L S ++ I DE
Sbjct: 307 NLGDEGARHIGDMKWLTNLDINCNSISDEGALYFSDLKQLTSFDISGNNICDE 359
>gi|290972583|ref|XP_002669031.1| predicted protein [Naegleria gruberi]
gi|284082572|gb|EFC36287.1| predicted protein [Naegleria gruberi]
Length = 369
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 162/357 (45%), Gaps = 8/357 (2%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E + + LT L N I M+ + L +LD+ERC G+ L + +L
Sbjct: 18 IEAISEMRQLTKLGI---NGIQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMPQLT 74
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
SLN + N + D K +S ++ L L I+ +++ G Y+ L +LT L++ + +
Sbjct: 75 SLNGGY-NYLQCGDAKLISEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNNNILS 133
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ L +L LN+ R + D+G S++ L L++GFN E + + L +L
Sbjct: 134 EGAKFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNMFGFEGIKAISQLNHL 193
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLS--FTGISDGSLRKLAG-LSSLKSLNLDARQ 335
L++ I G+ +T NL S+NL F L +L + L +L+++
Sbjct: 194 IELSIQGNEITINGVKLITEKKNLTSLNLGNIFYDTKTPELSQLVSQMHQLTTLDIENNN 253
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I L + L HL++ I G +++ L SL +CG + D G K + +
Sbjct: 254 IGPEVANLLAEMKNLKHLNIAFNNIEKEGLSHITQLTQLTSLNVCGNQIDDEGAKIVSSM 313
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L LN+ +N L + E I + L L +S++RI + + KNLR + +
Sbjct: 314 KQLLKLNIEENF-LNEGGCETIIEMPQLTQLYISSNRIGEKQVEMICGKKNLRDIRI 369
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 106/213 (49%), Gaps = 2/213 (0%)
Query: 241 SDDGCEKFSKIGSLKVL-NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
++D I ++ L LG N I D + + ++ L L+++ C I EG+ L +
Sbjct: 11 TNDTSSSIEAISEMRQLTKLGINGIQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVM 70
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
L S+N + + G + ++ +S L L+++ +I G +++L LT LD+
Sbjct: 71 PQLTSLNGGYNYLQCGDAKLISEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNNN 130
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
I GA ++RN KNL L + + D G +I ++ LT L++ N + ++ IS
Sbjct: 131 ILSEGAKFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNM-FGFEGIKAISQ 189
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L L+ L++ + IT G++ + KNL SL L
Sbjct: 190 LNHLIELSIQGNEITINGVKLITEKKNLTSLNL 222
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 148/348 (42%), Gaps = 54/348 (15%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA--------- 219
T S ++ +S + L L I+ + D+ + + + +LT L++E C ++
Sbjct: 14 TSSSIEAISEMRQLTKLGING--IQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMP 71
Query: 220 -------------CLDS--LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
C D+ +S + L L++N ++ +G + S + L L++G N I
Sbjct: 72 QLTSLNGGYNYLQCGDAKLISEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNNNI 131
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS 324
E ++ L NL LN++ IGDEG ++ + L ++++ F ++ ++ L+
Sbjct: 132 LSEGAKFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNMFGFEGIKAISQLN 191
Query: 325 SLKSLNLDARQITDTGLAALTS---------------------------LTGLTHLDLFG 357
L L++ +IT G+ +T + LT LD+
Sbjct: 192 HLIELSIQGNEITINGVKLITEKKNLTSLNLGNIFYDTKTPELSQLVSQMHQLTTLDIEN 251
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
I A L KNL+ L I + G+ HI L+ LT LN+ N + D+ +++
Sbjct: 252 NNIGPEVANLLAEMKNLKHLNIAFNNIEKEGLSHITQLTQLTSLNVCGN-QIDDEGAKIV 310
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
S + L+ LN+ + + G + + L L + S ++ ++ +
Sbjct: 311 SSMKQLLKLNIEENFLNEGGCETIIEMPQLTQLYISSNRIGEKQVEMI 358
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 112/231 (48%), Gaps = 10/231 (4%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L+ +++ +++ D G ++ + L +LD F + G++ + L++L LS + N
Sbjct: 144 NLVKLNVERNNIGDEGANYISEMKQLTALDIGFNM-FGFEGIKAISQLNHLIELSI-QGN 201
Query: 118 AITAQGMKAFAGLINLVKLDL-----ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
IT G+K NL L+L + T LV+ + +L +L+I+ N I
Sbjct: 202 EITINGVKLITEKKNLTSLNLGNIFYDTKTPELSQLVS--QMHQLTTLDIE-NNNIGPEV 258
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
L+ + NLK L I+ + + G++++ L +LT LN+ G + +S++ L
Sbjct: 259 ANLLAEMKNLKHLNIAFNNIEKEGLSHITQLTQLTSLNVCGNQIDDEGAKIVSSMKQLLK 318
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
LN+ L++ GCE ++ L L + N I ++ + + G NL + +
Sbjct: 319 LNIEENFLNEGGCETIIEMPQLTQLYISSNRIGEKQVEMICGKKNLRDIRI 369
>gi|290974964|ref|XP_002670214.1| predicted protein [Naegleria gruberi]
gi|284083770|gb|EFC37470.1| predicted protein [Naegleria gruberi]
Length = 383
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 134/254 (52%), Gaps = 9/254 (3%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ + L L+++ ++ D+G + S++ L L++G+N I + + + +L SL++
Sbjct: 123 ITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYNRIGVVGVKFINEMKHLTSLDI 182
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
GIGDEG+ +++ L L S++ + I D + ++ + L L+++ I G
Sbjct: 183 SGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHLTLLSINNNHIGAEGARF 242
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + L L ++ +I D GA ++ K L SL+I G + GV I ++ LT L +
Sbjct: 243 ISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGVEGVIPISEMKQLTSLEI 302
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-------ESCK 456
N + D+ +LIS + L+SLN+ N++I G + + +K L+SL + E K
Sbjct: 303 GGN-QIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQLKSLYIGGNQIGDEGVK 361
Query: 457 VTANDIKRLQSRDL 470
+ ++K+L S D+
Sbjct: 362 FIS-EMKQLTSLDI 374
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 134/278 (48%), Gaps = 25/278 (8%)
Query: 160 LNIKWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDS----------------------- 195
+N+K+ + DS +K ++ + LKSL IS +++ D
Sbjct: 106 VNLKFSRRLLDSIQVKFITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYNRIGV 165
Query: 196 -GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
G+ ++ ++ LT L++ G + + S+S L L L+ N ++ D G + S++ L
Sbjct: 166 VGVKFINEMKHLTSLDISGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHL 225
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
+L++ N I E + + L+SL++ + IGDEG + + L S+++S I
Sbjct: 226 TLLSINNNHIGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGV 285
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+ ++ + L SL + QI D G ++ + L L+++ +I GA ++ K L
Sbjct: 286 EGVIPISEMKQLTSLEIGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQL 345
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
+SL I G + D GVK I ++ LT L++ N + DK
Sbjct: 346 KSLYIGGNQIGDEGVKFISEMKQLTSLDIGYNEIVKDK 383
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 151/318 (47%), Gaps = 15/318 (4%)
Query: 6 ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCL-GQYPG--VNDKW----MDVIA----S 54
IS+Q FN + L + F + + +LC+ Q+ VN K+ +D I +
Sbjct: 66 ISKQFFNVIKERSKLVIKFKQKFTETRI-ELCMKSQFMNSIVNLKFSRRLLDSIQVKFIT 124
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ L S+D+S + + D G + + L SLD + +I G++ + + +LTSL
Sbjct: 125 EMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYN-RIGVVGVKFINEMKHLTSLDI- 182
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I +G+K+ + L L LD G ++ + L L+I N I +
Sbjct: 183 SGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHLTLLSIN-NNHIGAEGAR 241
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S + LKSL I +++ D G ++ +++LT L++ G + + +S + L L
Sbjct: 242 FISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGVEGVIPISEMKQLTSLE 301
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ Q+ D+G + S++ L LN+ N+I E + + L+SL + IGDEG+
Sbjct: 302 IGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQLKSLYIGGNQIGDEGVK 361
Query: 295 NLTGLTNLESINLSFTGI 312
++ + L S+++ + I
Sbjct: 362 FISEMKQLTSLDIGYNEI 379
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 3/207 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+SG+ + D G+ + + L SLDFN +I D G + + + +LT LS NN
Sbjct: 177 LTSLDISGNGIGDEGVKSISELKQLTSLDFNNN-RIGDKGAKSISEMKHLTLLSI-NNNH 234
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I A+G + + + L L + G + + +L SL+I N I + P+S
Sbjct: 235 IGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDIS-GNEIGVEGVIPISE 293
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL+I +++ D G + +++L LN+ + +S + L L +
Sbjct: 294 MKQLTSLEIGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQLKSLYIGGN 353
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
Q+ D+G + S++ L L++G+NEI
Sbjct: 354 QIGDEGVKFISEMKQLTSLDIGYNEIV 380
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 31/179 (17%)
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA----------------- 365
++S+ +L R + + +T + L LD+ RI D GA
Sbjct: 102 MNSIVNLKFSRRLLDSIQVKFITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYN 161
Query: 366 -------AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
++ K+L SL+I G G+ D GVK I +L LT L+ + N + DK + IS
Sbjct: 162 RIGVVGVKFINEMKHLTSLDISGNGIGDEGVKSISELKQLTSLDFNNN-RIGDKGAKSIS 220
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TANDIKRLQSRDLP 471
+ L L+++N+ I + G R + +K L+SL++ + ++ N++K+L S D+
Sbjct: 221 EMKHLTLLSINNNHIGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDIS 279
>gi|290991518|ref|XP_002678382.1| predicted protein [Naegleria gruberi]
gi|284091994|gb|EFC45638.1| predicted protein [Naegleria gruberi]
Length = 344
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 156/338 (46%), Gaps = 27/338 (7%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN IT++G + F L L+KLD+ GG I D MK
Sbjct: 11 NNPITSKGAEYFTNLKQLIKLDI-------GGTE------------------IGDEGMKS 45
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ + L L++ +K+ D GI L L LT L + + +L L L YL+
Sbjct: 46 IGKMKQLTKLEMCGNKIGDEGIKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLD 105
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + +L + G ++ S++ L L + N I DE + + L L + IGD G +
Sbjct: 106 IRKNKLGNQGAKEISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAI 165
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
+++ L +L+++ + +T + ++ + + L L++ + ++ + + L LT L
Sbjct: 166 SVSQLRHLKTLCIQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLL 225
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ +I DSGA + L +L I + G K + + +LT LNLS N + +K L
Sbjct: 226 ISDNQIGDSGAKIISELNQLTNLRIYDSNIGIEGAKSLSGMKNLTKLNLSGN-KIGNKGL 284
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
E ISG+ L L+V + I G ++L + NLR L +
Sbjct: 285 EAISGMLQLQKLSVIHCEIGDEGAKYLLNMPNLRKLYI 322
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 148/339 (43%), Gaps = 31/339 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGL-SNLTSLSFR 114
L+ +D+ G+++ D G+ + L L+ C +I D G++ L L S+LT L R
Sbjct: 26 KQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEM--CGNKIGDEGIKALSNLNSSLTHLCVR 83
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+NN I +G K L L LD+ + N + + K
Sbjct: 84 KNN-IGQEGAKTLKHLTRLNYLDIRK-------------------------NKLGNQGAK 117
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S L L L I + + D G + +Q LT L + P+ S+S L L L
Sbjct: 118 EISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLC 177
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + +G + + L L++ N++ + + + L L L + IGD G
Sbjct: 178 IQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDNQIGDSGAK 237
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
++ L L ++ + + I + L+G+ +L LNL +I + GL A++ + L L
Sbjct: 238 IISELNQLTNLRIYDSNIGIEGAKSLSGMKNLTKLNLSGNKIGNKGLEAISGMLQLQKLS 297
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+ I D GA YL N NLR L I G ++D +K ++
Sbjct: 298 VIHCEIGDEGAKYLLNMPNLRKLYI-GDDISDRIIKELR 335
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 123/282 (43%), Gaps = 30/282 (10%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+ + T LN+ P+T+ + + L L L++ ++ D+G + K+ L L + N
Sbjct: 1 MTQFTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEMCGN 60
Query: 263 EITDECLVHLKGLTNLES----LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
+I DE +K L+NL S L + IG EG L LT L +++ + + +
Sbjct: 61 KIGDEG---IKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAK 117
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
+++ L L L + I D G A+ + LT L + I D GA + ++L++L
Sbjct: 118 EISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLC 177
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNC-----------------------NLTDKTLE 415
I + G+K I ++ LT L++ N + D +
Sbjct: 178 IQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDNQIGDSGAK 237
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
+IS L L +L + +S I G + L +KNL L L K+
Sbjct: 238 IISELNQLTNLRIYDSNIGIEGAKSLSGMKNLTKLNLSGNKI 279
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
++ LN+ IT G T+L L LD+ G I D G + K L LE+CG
Sbjct: 1 MTQFTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEMCGN 60
Query: 383 GLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
+ D G+K + +L SSLT L + +N N+ + + + LT L L++ +++ + G + +
Sbjct: 61 KIGDEGIKALSNLNSSLTHLCVRKN-NIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAKEI 119
Query: 442 KPLKNLRSLTLESCKVTAND 461
L L L + CK D
Sbjct: 120 SELPQLTRLFI--CKNNIGD 137
>gi|72385483|ref|XP_846409.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|9366582|emb|CAB95344.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1449
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 143/493 (29%), Positives = 211/493 (42%), Gaps = 75/493 (15%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 611 ALNELNLNNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRDISHFSKCKNLVTLDLSFC 668
Query: 92 IQISD-------GGLEHL---------RGLSNLTSLSFRRNNAITAQGMKAFAGLI---- 131
++ D LE L +GLS L L R + +G++ +I
Sbjct: 669 NKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELP--RLCVLNIKGVELEDSVIGSLG 726
Query: 132 ---NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI- 187
+ V+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L +
Sbjct: 727 NGNSFVRLSLEHC-KGFGDVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVLDLG 784
Query: 188 -------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACL 221
C K+T S IA L L++L N++ C +
Sbjct: 785 RTQVDNNSLENICTSSIPLVLLNLSHCKKITSISAIASLTALEEL---NIDNCCNVTSGW 841
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLES 280
+ L L L+ +++D+ S+ SL LNL F +ITD + L +T LE
Sbjct: 842 NVFGTLHQLRVATLSNTRINDENVRYVSECKSLNTLNLAFCKDITD--VTALSKITMLEE 899
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLS--FTGISDGSLRKLAGLS-SLKSLNLDARQIT 337
LNLD C +G+ L L +++ + G SD + G S SL LNL+ R +
Sbjct: 900 LNLDCCHNIRKGIETLGKLPKARILSMKECYMGDSDAQQCSILGNSKSLVKLNLE-RSMG 958
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKHIKD 394
+ AL+++ L L L AR + +F L L + TD K+I +
Sbjct: 959 FISVKALSNIATLEELVLDHAR----EVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISE 1014
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
SL LLNLS +TD + ++S L+ L LNVS+ G L L LR L
Sbjct: 1015 SKSLRLLNLSHCKWVTD--ISVLSSLSTLEELNVSSCYGIKKGWESLGKLPLLRVAILSD 1072
Query: 455 CKVTANDIKRLQS 467
+TA DI L S
Sbjct: 1073 TNITAKDIACLSS 1085
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 122/452 (26%), Positives = 187/452 (41%), Gaps = 68/452 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD----------------------GGLEH 101
LS + + D + ++ +C +L +L+ FC I+D G+E
Sbjct: 855 LSNTRINDENVRYVSECKSLNTLNLAFCKDITDVTALSKITMLEELNLDCCHNIRKGIET 914
Query: 102 LRGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
L L LS + AQ +LVKL+LER G +++K L + +
Sbjct: 915 LGKLPKARILSMKECYMGDSDAQQCSILGNSKSLVKLNLERSM----GFISVKALSNIAT 970
Query: 160 L------NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L + + CI S L L+ L + + + + + L LLNL
Sbjct: 971 LEELVLDHAREVCCI-----PSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRLLNLSH 1025
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLV 270
C + LS+L +L LN++ C G E K+ L+V L IT + CL
Sbjct: 1026 CKWVTD-ISVLSSLSTLEELNVSSCYGIKKGWESLGKLPLLRVAILSDTNITAKDIACLS 1084
Query: 271 HLKGLT--------------------NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
K L +LE L + G +GL L L L ++L
Sbjct: 1085 SCKTLVKLQFSWCEELSDVTVVYEIQSLEELIVKKYSDGLKGLNALGTLPRLRFLHLRNV 1144
Query: 311 GISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
SD S+ + SL LN++ R ++TD + L+++T L L L+ R T GA L
Sbjct: 1145 RGSDISVESIGTSKSLVRLNIEMRGELTD--ITPLSNITSLEELSLWECRDTLEGAWTLE 1202
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
LRSL++ ++D+ + +I +T LNL+ + LTD + IS LT L LN+
Sbjct: 1203 RLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLTSSWKLTD--ISGISKLTALEELNLR 1260
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
++G L L LR L LES VT D
Sbjct: 1261 GCHRITSGWEALSELPRLRVLNLESTSVTTRD 1292
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 110/368 (29%), Positives = 163/368 (44%), Gaps = 35/368 (9%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ + L L +L++ C I G +L G + L + I IT D+ LS L
Sbjct: 1032 ISVLSSLSTLEELNVSSCYGIKKGWESL-GKLPLLRVAILSDTNITAKDIACLSSCKTLV 1090
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
LQ S C +++D + Y +Q L L ++ L++L L L +L+L + SD
Sbjct: 1091 KLQFSWCEELSDVTVVY--EIQSLEELIVKKYSDGLKGLNALGTLPRLRFLHLRNVRGSD 1148
Query: 243 DGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
E SL LN+ E+TD + L +T+LE L+L C EG L L
Sbjct: 1149 ISVESIGTSKSLVRLNIEMRGELTD--ITPLSNITSLEELSLWECRDTLEGAWTLERLPR 1206
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARI 360
L S++L + ISD +L + + SLNL + ++TD ++ ++ LT L L+L G
Sbjct: 1207 LRSLDLGLSDISDSTLYYICLSRFITSLNLTSSWKLTD--ISGISKLTALEELNLRGCHR 1264
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTD-------K 412
SG L LR L + +T G +I SL LN+ Q ++TD K
Sbjct: 1265 ITSGWEALSELPRLRVLNLESTSVTTRDGGYYISRCKSLVTLNI-QLSDMTDASCLANIK 1323
Query: 413 TLE---------LISGLTGLVSL------NVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
TLE L G + L +L N+ S IT LR ++P + L L CK
Sbjct: 1324 TLEELHIGECDELTQGFSALFTLPRLRILNLMGSLITDEDLREIQPPHTIEELNLSYCK- 1382
Query: 458 TANDIKRL 465
NDI L
Sbjct: 1383 NLNDITPL 1390
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 171/390 (43%), Gaps = 55/390 (14%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++ + L NL L+L + + +KL L++ CN ITD+ P+S L L+
Sbjct: 272 IRGISRLTNLKCLELNSTDIDDSCIGEISACVKLSKLSVSECNNITDA--TPISQLAALE 329
Query: 184 SLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLS 241
L + SC +T GI L L +L +L+L G PV CL L GSL LNL+ C QL+
Sbjct: 330 ELNVNSCYHIT-KGIGTLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSLERLNLSYCIQLT 388
Query: 242 D---------------DGCEKFSK-------IGSLKVLNLGFNEITDECLVHLKGLTNLE 279
D +GC + ++ + L+VL++ ++ D + L +
Sbjct: 389 DINPLSSATAIEELNLNGCRRITRGIGVVWALPKLRVLHMKDVQLEDSVIGSLGNGNSFV 448
Query: 280 SLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L+L++C G GD L L+ + LE +N+ + L L L+ LN+ I+
Sbjct: 449 RLSLENCAGFGDMTL--LSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNVKEVHISS 506
Query: 339 ---TGLAA--------LTSLTG------------LTHLDLFGARITDSGAAYLRNFKNLR 375
TG+ A L S+TG L L L G D+G L N L+
Sbjct: 507 LDFTGIGASKSLLQLTLESITGLIDVEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLK 566
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L++ G + ++ + ++ LNLS +T+ + IS L L LN++N +
Sbjct: 567 MLDLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTN--VSHISSLEALNELNLNNCFGIN 624
Query: 436 AGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
AG ++ L+ L L + +T DI
Sbjct: 625 AGWEAIEKLQQLHVAILSNTHITDRDISHF 654
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 157/360 (43%), Gaps = 38/360 (10%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+L++L LE T GL++++ L + LE L++ C I D+ + L L LK L +S
Sbjct: 517 SLLQLTLESIT----GLIDVEALANILTLEKLSLHGCTGI-DAGIGCLGNLPQLKMLDLS 571
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ + + L Q + LNL C + +S+L +L LNLN C + G E
Sbjct: 572 GTNTDNESLRSLCLSQTMVSLNLSHC-WKMTNVSHISSLEALNELNLNNCFGINAGWEAI 630
Query: 249 SKIGSLKVLNLGFNEITDECLVH-----------------------LKGLTNLESLNLDS 285
K+ L V L ITD + H L +T LE LNLDS
Sbjct: 631 EKLQQLHVAILSNTHITDRDISHFSKCKNLVTLDLSFCNKLLDVTTLSNITTLEELNLDS 690
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAAL 344
C +GL L L L +N+ + D + L +S L+L+ + D + L
Sbjct: 691 CSNIRKGLSVLGELPRLCVLNIKGVELEDSVIGSLGNGNSFVRLSLEHCKGFGD--VTPL 748
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNL 403
++L L L+L SG L LR L++ + + +++I S L LLNL
Sbjct: 749 SNLVTLEELNLHYCDKVTSGMGTLGRLLQLRVLDLGRTQVDNNSLENICTSSIPLVLLNL 808
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
S +T ++ I+ LT L LN+ N ++G L LR TL + ++ +++
Sbjct: 809 SHCKKIT--SISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENVR 866
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 138/317 (43%), Gaps = 57/317 (17%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------------------GGLEHLRG 104
LS +++T + L C L L F++C ++SD GL+ L
Sbjct: 1070 LSDTNITAKDIACLSSCKTLVKLQFSWCEELSDVTVVYEIQSLEELIVKKYSDGLKGLNA 1129
Query: 105 LSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN---LKGLMKLES 159
L L L F RN + +++ +LV+L++E + G L + L + LE
Sbjct: 1130 LGTLPRLRFLHLRNVRGSDISVESIGTSKSLVRLNIE----MRGELTDITPLSNITSLEE 1185
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL------------------- 200
L++ C T L L L+SL + S ++DS + Y+
Sbjct: 1186 LSLWECR-DTLEGAWTLERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLTSSWKLTD 1244
Query: 201 -KGLQKLTLL---NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLK 255
G+ KLT L NL GC + ++LS L L LNL ++ DG S+ SL
Sbjct: 1245 ISGISKLTALEELNLRGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYYISRCKSLV 1304
Query: 256 VLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
LN+ +++TD CL ++K LE L++ C +G L L L +NL + I+D
Sbjct: 1305 TLNIQLSDMTDASCLANIK---TLEELHIGECDELTQGFSALFTLPRLRILNLMGSLITD 1361
Query: 315 GSLRKLAGLSSLKSLNL 331
LR++ +++ LNL
Sbjct: 1362 EDLREIQPPHTIEELNL 1378
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 112/434 (25%), Positives = 181/434 (41%), Gaps = 56/434 (12%)
Query: 20 LTEVSLEAFRD--CALQDLCLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VT 70
L E+ L+ R+ C CL + +N K+ D+ S+ SL ++LS VT
Sbjct: 971 LEELVLDHAREVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRLLNLSHCKWVT 1030
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D + L S L+ L+ + C I G E L L L ++ + ITA+ + +
Sbjct: 1031 DISV--LSSLSTLEELNVSSCYGIKKG-WESLGKLP-LLRVAILSDTNITAKDIACLSSC 1086
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD----MKPLSGLTNLKSLQ 186
LVKL C + V + + LE L +K SD + L L L+ L
Sbjct: 1087 KTLVKLQFSWCEELSDVTV-VYEIQSLEELIVK-----KYSDGLKGLNALGTLPRLRFLH 1140
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDG 244
+ + +D + + + L LN+E + D LS + SL L+L C+ + +G
Sbjct: 1141 LRNVRGSDISVESIGTSKSLVRLNIE---MRGELTDITPLSNITSLEELSLWECRDTLEG 1197
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHL-----------------------KGLTNLESL 281
++ L+ L+LG ++I+D L ++ LT LE L
Sbjct: 1198 AWTLERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLTSSWKLTDISGISKLTALEEL 1257
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINLSFTGIS--DGSLRKLAGLSSLKSLNLDARQITDT 339
NL C G L+ L L +NL T ++ DG ++ SL +LN+ +TD
Sbjct: 1258 NLRGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYY-ISRCKSLVTLNIQLSDMTDA 1316
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
+ L ++ L L + G + L LR L + G +TD ++ I+ ++
Sbjct: 1317 --SCLANIKTLEELHIGECDELTQGFSALFTLPRLRILNLMGSLITDEDLREIQPPHTIE 1374
Query: 400 LLNLSQNCNLTDKT 413
LNLS NL D T
Sbjct: 1375 ELNLSYCKNLNDIT 1388
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 10/157 (6%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLL 209
+ L LE LN++ C+ IT S + LS L L+ L + S S T G Y+ + L L
Sbjct: 1248 ISKLTALEELNLRGCHRIT-SGWEALSELPRLRVLNLESTSVTTRDGGYYISRCKSLVTL 1306
Query: 210 NLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
N++ +T A+CL ++ L L ++ C G + L++LNL + ITDE
Sbjct: 1307 NIQLSDMTDASCLANIKTLEEL---HIGECDELTQGFSALFTLPRLRILNLMGSLITDED 1363
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
L ++ +E LNL C + L ++T L ++SI
Sbjct: 1364 LREIQPPHTIEELNLSYC----KNLNDITPLGRIKSI 1396
>gi|290998998|ref|XP_002682067.1| predicted protein [Naegleria gruberi]
gi|284095693|gb|EFC49323.1| predicted protein [Naegleria gruberi]
Length = 427
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 153/316 (48%), Gaps = 16/316 (5%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLV 149
++I + G++ + L L SL + + + + + L +LD+ R C R +GG
Sbjct: 114 LKIGEDGIKAISQLKQLKSLYLYAD--VDSNALNGVFEMTQLTELDINRKQCHRWNGGFK 171
Query: 150 NLKGLMKLESLNIKWCNCITDSDM-KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
LK L L+ L C CI D+ + +S L L L I+ + + G + L+ LT+
Sbjct: 172 KLKQLTNLKKLCAVGC-CIDYEDVFQSISQLDQLTELHIASNSLYSDGAKLIGKLKNLTI 230
Query: 209 LNLEGCPVTAAC---LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L++ C V L+S+S L +L YL+ L G SK+ +L L + N I+
Sbjct: 231 LDISYCGVCIPHNEGLESISELINLTYLDCANNGLRSIG--PISKLENLTFLRVSLNRIS 288
Query: 266 --DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
DE +V LK LTNL+ + I D+ + + L S+ + I D S + ++ +
Sbjct: 289 SLDESIVKLKKLTNLD---VGYNSISDQSAEVFSSMKQLTSLFIQENNIGDKSAKSISEI 345
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
S LK+L +D+ ++D G +++++ LT LD+ I D GA L L++L I
Sbjct: 346 SQLKNLCIDSNIVSDKGAKSISTMENLTELDIRNNDIGDDGAKSLTRLTKLKTLRIAQNN 405
Query: 384 LTDAGVKHIKDLSSLT 399
+++ G+ +K L T
Sbjct: 406 ISEEGMMTLKKLKYST 421
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 142/334 (42%), Gaps = 64/334 (19%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG---LTNLK 183
FA + L KLD+ G+ + L +L+SL + D D L+G +T L
Sbjct: 100 FAKMSQLTKLDISGLKIGEDGIKAISQLKQLKSLYL-----YADVDSNALNGVFEMTQLT 154
Query: 184 SLQIS---CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQ 239
L I+ C + + G LK L L L GC + S+S L L L++
Sbjct: 155 ELDINRKQCHR-WNGGFKKLKQLTNLKKLCAVGCCIDYEDVFQSISQLDQLTELHIASNS 213
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL-ESLNLDSCGIGDEGLVNLTG 298
L DG + K+ +L +L++ + + C+ H +GL ++ E +NL + GL ++
Sbjct: 214 LYSDGAKLIGKLKNLTILDISYCGV---CIPHNEGLESISELINLTYLDCANNGLRSIGP 270
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
++ LE NL+F +S L +SSL ++ L LT+LD+
Sbjct: 271 ISKLE--NLTFLRVS------LNRISSLDE--------------SIVKLKKLTNLDVGYN 308
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I+D A + K L SL I Q N+ DK+ + IS
Sbjct: 309 SISDQSAEVFSSMKQLTSLFI-------------------------QENNIGDKSAKSIS 343
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
++ L +L + ++ ++ G + + ++NL L +
Sbjct: 344 EISQLKNLCIDSNIVSDKGAKSISTMENLTELDI 377
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 116/263 (44%), Gaps = 30/263 (11%)
Query: 73 GLIHLKDCSNLQSL-DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
G LK +NL+ L CI D + + L LT L +N++ + G K L
Sbjct: 169 GFKKLKQLTNLKKLCAVGCCIDYEDV-FQSISQLDQLTELHIA-SNSLYSDGAKLIGKLK 226
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISC 189
NL LD+ C L+ + +L +N+ + +C + + P+S L NL L++S
Sbjct: 227 NLTILDISYCGVCIPHNEGLESISEL--INLTYLDCANNGLRSIGPISKLENLTFLRVSL 284
Query: 190 SKVT--DSGIAYLKGL---------------------QKLTLLNLEGCPVTAACLDSLSA 226
++++ D I LK L ++LT L ++ + S+S
Sbjct: 285 NRISSLDESIVKLKKLTNLDVGYNSISDQSAEVFSSMKQLTSLFIQENNIGDKSAKSISE 344
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+ L L ++ +SD G + S + +L L++ N+I D+ L LT L++L +
Sbjct: 345 ISQLKNLCIDSNIVSDKGAKSISTMENLTELDIRNNDIGDDGAKSLTRLTKLKTLRIAQN 404
Query: 287 GIGDEGLVNLTGLTNLESINLSF 309
I +EG++ L L ++ + F
Sbjct: 405 NISEEGMMTLKKLKYSTNVVIHF 427
>gi|46447197|ref|YP_008562.1| hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400838|emb|CAF24287.1| hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 380
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 5/209 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL HL L L L+ +T G+
Sbjct: 172 LTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGCRKLTDAGLAHLT 231
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L L L C + GL +L L+ L+ L++ C +T + L L L+ L +
Sbjct: 232 PLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHLKPLVALQHLNL 291
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C K+TD+G+A+LK L L LNL GC +T A L L L +L +L+L C L+D G
Sbjct: 292 SWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHLDLTACSNLTDVG 351
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHL 272
+ +L+ LNLG+ +TD L H+
Sbjct: 352 LAHLKPLVALQHLNLGWCPNLTDAGLAHI 380
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 119/221 (53%), Gaps = 8/221 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK L + C +TD+G+A+L L L LNL GC
Sbjct: 160 EIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGC 219
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T A L L+ L L YL+L C L+D G + + +L+ L+L G +T L H
Sbjct: 220 RKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAH 279
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 329
LK L L+ LNL C + D GL +L L L +NL+ ++D L L L +L+ L
Sbjct: 280 LKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHL 339
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 368
+L A +TD GLA L L L HL+L + +TD+G A++
Sbjct: 340 DLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDAGLAHI 380
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 247 KFSKI---GSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGL 299
KF KI S ++ L F+E +TD L+ LK NL+ L+L C + D GL +L L
Sbjct: 149 KFEKILNHFSNEIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASL 208
Query: 300 TNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 357
L+ +NL+ ++D L L L L+ L+L +TD GLA LT L L HLDL G
Sbjct: 209 VALQHLNLAGCRKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNG 268
Query: 358 -ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+T G A+L+ L+ L + LTDAG+ H+K L +L LNL+ LTD L
Sbjct: 269 CPNLTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLV 328
Query: 416 LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
+ L L L+++ S +T GL HLKPL L+ L L C
Sbjct: 329 HLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCP 370
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 6/184 (3%)
Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLA 321
+TD L HL L L+ LNL C + D GL +LT L L+ ++L+ ++D L L
Sbjct: 197 LTDAGLAHLASLVALQHLNLAGCRKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLT 256
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI 379
L +L+ L+L+ +T GLA L L L HL+L + ++TD+G A+L+ L L +
Sbjct: 257 PLVALQHLDLNGCPNLTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNL 316
Query: 380 CG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAG 437
G LTDAG+ H+ L +L L+L+ NLTD L + L L LN+ +T AG
Sbjct: 317 AGCDKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDAG 376
Query: 438 LRHL 441
L H+
Sbjct: 377 LAHI 380
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 28/157 (17%)
Query: 62 VDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L+G D +TD+GL HL LQ LD N C ++ GL HL+
Sbjct: 239 LSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHLK----------------- 281
Query: 121 AQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
L+ L L+L C ++ GL +LK L+ L LN+ C+ +TD+ + L L
Sbjct: 282 --------PLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPL 333
Query: 180 TNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L+ L + +CS +TD G+A+LK L L LNL CP
Sbjct: 334 VTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCP 370
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DL+G ++T GL HLK LQ L+ ++C +++D GL HL+ L L L+
Sbjct: 260 ALQHLDLNGCPNLTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGC 319
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDS 171
+ +T G+ L+ L LDL C+ + GL +LK L+ L+ LN+ WC +TD+
Sbjct: 320 DKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDA 375
>gi|302753328|ref|XP_002960088.1| hypothetical protein SELMODRAFT_437235 [Selaginella moellendorffii]
gi|300171027|gb|EFJ37627.1| hypothetical protein SELMODRAFT_437235 [Selaginella moellendorffii]
Length = 657
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 117/412 (28%), Positives = 198/412 (48%), Gaps = 46/412 (11%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D + ++A L ++DLS ++VTD GL + +L+ L+ C + DGGL L
Sbjct: 190 GITDIGIALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSL 249
Query: 103 -RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN---------- 150
R +L L R + ++ G+ A A ++L +L L C+ I L+
Sbjct: 250 KRSCRSLLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQS 309
Query: 151 ----------------LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSK-V 192
+G +L+ L++ C +TD + ++ G T L L ++C + +
Sbjct: 310 IVLDGCEIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCREL 369
Query: 193 TDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEK 247
TD+ + + K + L L +E C + D L LG L L+ C +SD G +
Sbjct: 370 TDASLCRISKDCKGLESLKMESCSLITE--DGLCGLGEGCPRLEELDFTECNMSDTGLKY 427
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNL-DSCGIGDEGLVNL-TGLTNLE 303
SK +L+ L LGF + ITD+ + H+ NL L+ S GIGD G+ + +G L+
Sbjct: 428 ISKCTALRSLKLGFCSTITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLK 487
Query: 304 SINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGAR 359
++LS+ + I+D SL+ L+ L L+ L L ++ TGLA + S LT +D+ ++
Sbjct: 488 LLDLSYCSKITDCSLQSLSQLRELQRLELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQ 547
Query: 360 ITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
I ++G + L F LR + I ++ AG+ + LS L + L N+T
Sbjct: 548 IGNAGVSALSFFCPGLRMMNISYCPISKAGLLSLPRLSCLQSVRLVHLKNVT 599
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 132/468 (28%), Positives = 211/468 (45%), Gaps = 77/468 (16%)
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
G+ L S++LS G GL+ C++L +D ++C + D + L +SNL +L
Sbjct: 99 GNRLASINLSRVGGFTSAGLGLLARSCCASLTDVDLSYCSNLKDSDVLALAQISNLQALR 158
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
++IT G+ A ++KL L +K C ITD
Sbjct: 159 LTGCHSITDIGLGCLAAGCKMLKL-----------------------LTLKGCLGITDIG 195
Query: 173 MKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS-ALGS 229
+ ++ L++L +S ++VTD G+A + L L +LNL C V L SL + S
Sbjct: 196 IALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRS 255
Query: 230 LFYLNLNRCQ-LSDDGCEKFSKIG-SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
L L+++RC +SD G + SL+ L L + + ITD+ L + +L+S+ LD C
Sbjct: 256 LLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQSIVLDGC 315
Query: 287 GIGDEGLVNLT-GLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLA 342
I GL + G L+ ++LS G++D + +A G ++L LNL R++TD L
Sbjct: 316 EIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLC 375
Query: 343 ALTS--------------------LTG-------LTHLDLFGARITDSGAAYLRNFKNLR 375
++ L G L LD ++D+G Y+ LR
Sbjct: 376 RISKDCKGLESLKMESCSLITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALR 435
Query: 376 SLEI--CGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSN- 430
SL++ C +TD GV HI +L L+ ++ + D + I SG L L++S
Sbjct: 436 SLKLGFC-STITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYC 494
Query: 431 SRITSAGLRHLKPLKNLRSLTLESC--------KVTANDIKRLQSRDL 470
S+IT L+ L L+ L+ L L C V A+ KRL D+
Sbjct: 495 SKITDCSLQSLSQLRELQRLELRGCVLVSSTGLAVMASGCKRLTEIDI 542
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 28/162 (17%)
Query: 29 RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
R C L++L + G+ D + IAS C L+ LD
Sbjct: 456 RCCNLRELDFYRSKGIGDAGVAAIAS------------------------GCPKLKLLDL 491
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HG 146
++C +I+D L+ L L L L R +++ G+ A G L ++D++RC++I +
Sbjct: 492 SYCSKITDCSLQSLSQLRELQRLELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNA 551
Query: 147 GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
G+ L L +NI +C I+ + + L L+ L+S+++
Sbjct: 552 GVSALSFFCPGLRMMNISYCP-ISKAGLLSLPRLSCLQSVRL 592
>gi|254416357|ref|ZP_05030110.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176795|gb|EDX71806.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 438
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 163/339 (48%), Gaps = 45/339 (13%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ L G SNLT L + +N+IT + AGL NL L LE + ++ L +L
Sbjct: 66 ISPLAGFSNLTKL-YLESNSIT--DISPLAGLSNLTVLSLE-----SNSITDVSPLAELS 117
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+L + N + +D+ PL+GL+NL L ++ + +TD I L GL LT+L L+ +T
Sbjct: 118 NLTKLYLNNNSITDVSPLAGLSNLTKLYLNNNSITD--IGPLAGLSNLTVLYLDSNSITD 175
Query: 219 ACLDSLSALGSLFYLNLNRCQLSD--------------------DGCEKFSKIGSLKVLN 258
+ L+ L +L LNL ++D +++ +L VL
Sbjct: 176 --VSPLAGLSNLTVLNLGNNSITDVNPLAELSNLTKVFLTNNSITNISPLAELSNLTVLY 233
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLSFTGISDGS- 316
L N ITD + L GL+NL LNLD+ I D L L+ LT L N F I + S
Sbjct: 234 LYSNSITD--ISPLAGLSNLTVLNLDNNSITDISPLAGLSNLTELSLGNADFFIIGENSI 291
Query: 317 --LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+ LAGLS+L LNL ITD ++ L L+ LT L L ITD + L NL
Sbjct: 292 TDISPLAGLSNLTVLNLGRNSITD--VSPLAELSNLTKLSLGSNSITD--ISPLAGLSNL 347
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
L + +TD V + LS+LT L LS N +TD +
Sbjct: 348 TKLYLDSNSITD--VSPLAGLSNLTELFLSSNS-ITDAS 383
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 156/309 (50%), Gaps = 33/309 (10%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
W N ITD + PL+G +NL L + + +TD I+ L GL LT+L+LE +T +
Sbjct: 59 WDNSITD--ISPLAGFSNLTKLYLESNSITD--ISPLAGLSNLTVLSLESNSITD--VSP 112
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L+ L +L L LN ++D + + +L L L N ITD + L GL+NL L L
Sbjct: 113 LAELSNLTKLYLNNNSITD--VSPLAGLSNLTKLYLNNNSITD--IGPLAGLSNLTVLYL 168
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
DS I D + L GL+NL +NL I+D + LA LS+L + L IT+ ++
Sbjct: 169 DSNSITD--VSPLAGLSNLTVLNLGNNSITD--VNPLAELSNLTKVFLTNNSITN--ISP 222
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L L+ LT L L+ ITD + L NL L + +TD + + LS+LT L+L
Sbjct: 223 LAELSNLTVLYLYSNSITD--ISPLAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSL 278
Query: 404 SQ-------NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
++TD + ++GL+ L LN+ + IT + L L NL L+L S
Sbjct: 279 GNADFFIIGENSITD--ISPLAGLSNLTVLNLGRNSIT--DVSPLAELSNLTKLSLGSNS 334
Query: 457 VTANDIKRL 465
+T DI L
Sbjct: 335 IT--DISPL 341
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 148/294 (50%), Gaps = 34/294 (11%)
Query: 45 NDKWMDVIASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQ--SLDFNFCIQISDGGLEH 101
N+ DV G S+L + L+ + +TD G L SNL LD N +S
Sbjct: 126 NNSITDVSPLAGLSNLTKLYLNNNSITDIG--PLAGLSNLTVLYLDSNSITDVS-----P 178
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLSNLT L+ NN+IT + A L NL K+ L + + N+ L +L +L
Sbjct: 179 LAGLSNLTVLNLG-NNSIT--DVNPLAELSNLTKVFLT-----NNSITNISPLAELSNLT 230
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV----- 216
+ + + +D+ PL+GL+NL L + + +TD I+ L GL LT L+L
Sbjct: 231 VLYLYSNSITDISPLAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSLGNADFFIIGE 288
Query: 217 -TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ + L+ L +L LNL R ++D +++ +L L+LG N ITD + L GL
Sbjct: 289 NSITDISPLAGLSNLTVLNLGRNSITD--VSPLAELSNLTKLSLGSNSITD--ISPLAGL 344
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+NL L LDS I D + L GL+NL + LS I+D S LA L++L+ L
Sbjct: 345 SNLTKLYLDSNSITD--VSPLAGLSNLTELFLSSNSITDAS--PLAQLTNLRRL 394
>gi|302804592|ref|XP_002984048.1| hypothetical protein SELMODRAFT_445748 [Selaginella moellendorffii]
gi|300148400|gb|EFJ15060.1| hypothetical protein SELMODRAFT_445748 [Selaginella moellendorffii]
Length = 657
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 199/412 (48%), Gaps = 46/412 (11%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D + ++A L ++DLS ++VTD GL + +L+ L+ C + DGGL L
Sbjct: 190 GITDIGIALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSL 249
Query: 103 -RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN---------- 150
R +L L R + ++ G+ A A ++L +L L C+ I L+
Sbjct: 250 KRSCRSLLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQS 309
Query: 151 ----------------LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSK-V 192
+G +L+ L++ C +TD + ++ G T L L ++C + +
Sbjct: 310 IVLDGCEIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCREL 369
Query: 193 TDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEK 247
TD+ + + K + L L +E C + D L LG L L+ C +SD G +
Sbjct: 370 TDASLCRISKDCKGLESLKMESCSLITE--DGLCGLGEGCPRLEELDFTECNMSDTGLKY 427
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNL-DSCGIGDEGLVNL-TGLTNLE 303
SK +L+ L LGF + ITD+ + H+ NL L+ S GIGD G+ + +G L+
Sbjct: 428 ISKCTALRSLKLGFCSTITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLK 487
Query: 304 SINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-LTGLTHLDL-FGAR 359
++LS+ + I+D SL+ L+ L L+ + L ++ TGLA + S LT +D+ ++
Sbjct: 488 LLDLSYCSKITDCSLQSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQ 547
Query: 360 ITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
I ++G + L F LR + I +++AG+ + LS L + L N+T
Sbjct: 548 IGNAGVSALSFFCPGLRMMNISYCPISNAGLLSLPRLSCLQSVRLVHLKNVT 599
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 131/468 (27%), Positives = 211/468 (45%), Gaps = 77/468 (16%)
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
G+ L S++LS G GL+ C++L +D ++C + D + L +SNL +L
Sbjct: 99 GNRLASINLSRVGGFTSAGLGLLARSCCASLTDVDLSYCSNLKDSDVLALAQISNLQALR 158
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
++IT G+ A ++KL L +K C ITD
Sbjct: 159 LTGCHSITDIGLGCLAAGCKMLKL-----------------------LTLKGCLGITDIG 195
Query: 173 MKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS-ALGS 229
+ ++ L++L +S ++VTD G+A + L L +LNL C V L SL + S
Sbjct: 196 IALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRS 255
Query: 230 LFYLNLNRCQ-LSDDGCEKFSKIG-SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
L L+++RC +SD G + SL+ L L + + ITD+ L + +L+S+ LD C
Sbjct: 256 LLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQSIVLDGC 315
Query: 287 GIGDEGLVNLT-GLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLA 342
I GL + G L+ ++LS G++D + +A G ++L LNL R++TD L
Sbjct: 316 EIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLC 375
Query: 343 ALTS--------------------LTG-------LTHLDLFGARITDSGAAYLRNFKNLR 375
++ L G L LD ++D+G Y+ LR
Sbjct: 376 RISKDCKGLESLKMESCSLITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALR 435
Query: 376 SLEI--CGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSN- 430
SL++ C +TD GV HI +L L+ ++ + D + I SG L L++S
Sbjct: 436 SLKLGFC-STITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYC 494
Query: 431 SRITSAGLRHLKPLKNLRSLTLESC--------KVTANDIKRLQSRDL 470
S+IT L+ L L+ L+ + L C V A+ KRL D+
Sbjct: 495 SKITDCSLQSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDI 542
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 28/162 (17%)
Query: 29 RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
R C L++L + G+ D + IAS C L+ LD
Sbjct: 456 RCCNLRELDFYRSKGIGDAGVAAIAS------------------------GCPKLKLLDL 491
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HG 146
++C +I+D L+ L L L + R +++ G+ A G L ++D++RC++I +
Sbjct: 492 SYCSKITDCSLQSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNA 551
Query: 147 GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
G+ L L +NI +C I+++ + L L+ L+S+++
Sbjct: 552 GVSALSFFCPGLRMMNISYCP-ISNAGLLSLPRLSCLQSVRL 592
>gi|290994542|ref|XP_002679891.1| predicted protein [Naegleria gruberi]
gi|284093509|gb|EFC47147.1| predicted protein [Naegleria gruberi]
Length = 359
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 147/308 (47%), Gaps = 2/308 (0%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A+G + L +L LD+ + G ++ + +L LNI N I K +
Sbjct: 51 VNAEGANMISNLAHLADLDISNNQLLERGSKIIREMTQLTKLNISRNN-INAGGTKSICE 109
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+T L L IS + + + G +Y+ G+ KLT L++ + + SL + +L LN++ C
Sbjct: 110 MTQLTDLDISNNFIGNEGASYIGGMTKLTNLSISENHIGVEGIKSLFHINNLICLNISSC 169
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ D+G S++ L L + NEI + + L LN+ +G+EG +
Sbjct: 170 KIGDEGARLISEMKQLTTLEISHNEIGSYGSKAISEMYQLTKLNIRYNVLGNEGAHYIGI 229
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L +++S IS + L+ LS L L+++ +I D G+ +++ L L +LD+
Sbjct: 230 MEQLTELDISHNRISGEGAKSLSKLSQLTKLDINTNEIGDEGMKSISKLDQLLYLDIGEN 289
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I D G + L L I + + G + + + LT L++ N + D +LEL+S
Sbjct: 290 EIGDIGTGLIIGMSKLTELLINDNRVGNDGAESLAQMHQLTQLDICNNP-VNDDSLELLS 348
Query: 419 GLTGLVSL 426
L L++
Sbjct: 349 KLPDLINF 356
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 150/322 (46%), Gaps = 3/322 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +D+S V G + + ++L LD + Q+ + G + +R ++ LT L+ RNN
Sbjct: 41 LTKLDVSSWLVNAEGANMISNLAHLADLDISNN-QLLERGSKIIREMTQLTKLNISRNN- 98
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I A G K+ + L LD+ + G + G+ KL +L+I N I +K L
Sbjct: 99 INAGGTKSICEMTQLTDLDISNNFIGNEGASYIGGMTKLTNLSISE-NHIGVEGIKSLFH 157
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ NL L IS K+ D G + +++LT L + + + ++S + L LN+
Sbjct: 158 INNLICLNISSCKIGDEGARLISEMKQLTTLEISHNEIGSYGSKAISEMYQLTKLNIRYN 217
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
L ++G + L L++ N I+ E L L+ L L++++ IGDEG+ +++
Sbjct: 218 VLGNEGAHYIGIMEQLTELDISHNRISGEGAKSLSKLSQLTKLDINTNEIGDEGMKSISK 277
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L L +++ I D + G+S L L ++ ++ + G +L + LT LD+
Sbjct: 278 LDQLLYLDIGENEIGDIGTGLIIGMSKLTELLINDNRVGNDGAESLAQMHQLTQLDICNN 337
Query: 359 RITDSGAAYLRNFKNLRSLEIC 380
+ D L +L + C
Sbjct: 338 PVNDDSLELLSKLPDLINFYFC 359
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 147/348 (42%), Gaps = 35/348 (10%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
G+ L S +K CN I + G L L +S V G + L L L++
Sbjct: 20 GIGTLVSDTVKLCNFI------RMCG--KLTKLDVSSWLVNAEGANMISNLAHLADLDIS 71
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ + + L LN++R ++ G + ++ L L++ N I +E ++
Sbjct: 72 NNQLLERGSKIIREMTQLTKLNISRNNINAGGTKSICEMTQLTDLDISNNFIGNEGASYI 131
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
G+T L +L++ IG EG+ +L + NL +N+S I D R ++ + L +L +
Sbjct: 132 GGMTKLTNLSISENHIGVEGIKSLFHINNLICLNISSCKIGDEGARLISEMKQLTTLEIS 191
Query: 333 ARQITDTGLAALTS------------------------LTGLTHLDLFGARITDSGAAYL 368
+I G A++ + LT LD+ RI+ GA L
Sbjct: 192 HNEIGSYGSKAISEMYQLTKLNIRYNVLGNEGAHYIGIMEQLTELDISHNRISGEGAKSL 251
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
L L+I + D G+K I L L L++ +N + D LI G++ L L +
Sbjct: 252 SKLSQLTKLDINTNEIGDEGMKSISKLDQLLYLDIGEN-EIGDIGTGLIIGMSKLTELLI 310
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
+++R+ + G L + L L + C ND LP+L++F
Sbjct: 311 NDNRVGNDGAESLAQMHQLTQLDI--CNNPVNDDSLELLSKLPDLINF 356
>gi|195150157|ref|XP_002016021.1| GL10712 [Drosophila persimilis]
gi|194109868|gb|EDW31911.1| GL10712 [Drosophila persimilis]
Length = 529
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 123/374 (32%), Positives = 191/374 (51%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R AL+DL LG +L S++LSG
Sbjct: 193 SPSLFNCLV-RRGIKKVQILSLRR-ALKDLVLGV----------------PALTSLNLSG 234
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 235 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLENLELGGCCNI 291
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 292 TNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLS 351
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 352 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 404
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 405 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 449
Query: 286 CGIGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGL 341
C I D+G+V + L LE++N+ + I+D L+ LA L++LK+++L Q++ G+
Sbjct: 450 CQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 509
Query: 342 AALTSLTGLTHLDL 355
+ L L L+L
Sbjct: 510 DIIMKLPKLQKLNL 523
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 161/317 (50%), Gaps = 33/317 (10%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLEN 282
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 283 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 332
Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAG 322
E G LE L L C + DE L ++ GLT+L+SINLSF ++D L+ LA
Sbjct: 333 AE------GNLQLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLAR 386
Query: 323 LSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLE 378
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 387 MPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLS 446
Query: 379 ICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITS 435
+ +TD G VK K L L LN+ Q +TDK L+ L LT L ++++ ++++S
Sbjct: 447 LNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSS 506
Query: 436 AGLRHLKPLKNLRSLTL 452
G+ + L L+ L L
Sbjct: 507 KGIDIIMKLPKLQKLNL 523
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 16/209 (7%)
Query: 69 VTDSGLIHLKDCS--------NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
++D G+ HL S L+ L C ++SD L H+ +GL++L S++ ++
Sbjct: 317 ISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSV 376
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
T G+K A + L +L+L C I G+ L +G + SL++ +C+ I+D + ++
Sbjct: 377 TDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIA 436
Query: 178 -GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYL 233
GL L+SL ++ ++TD G+ + K LQ+L LN+ C +T L +L+ L +L +
Sbjct: 437 QGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTI 496
Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGF 261
+L C QLS G + K+ L+ LNLG
Sbjct: 497 DLYGCTQLSSKGIDIIMKLPKLQKLNLGL 525
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 137/273 (50%), Gaps = 37/273 (13%)
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGC-EKFS-KIGSLKVL 257
+G++K+ +L+L A D + + +L LNL+ C ++D FS + +LK L
Sbjct: 203 RGIKKVQILSLR-----RALKDLVLGVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTL 257
Query: 258 NLGF-NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINL-SFTGI 312
+L +ITD L + + L NLE+L L C I + GL+ + GL L +NL S I
Sbjct: 258 DLSLCKQITDTSLGRIAQHLRNLENLELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHI 317
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL-RN 370
SD + LAG S R+ + L L HL L R++D ++ +
Sbjct: 318 SDQGIGHLAGFS---------RETAEGNLQ-------LEHLGLQDCQRLSDEALGHIAQG 361
Query: 371 FKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLN 427
+L+S L C +TD+G+KH+ + L LNL N++D + L G +G+ SL+
Sbjct: 362 LTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLD 420
Query: 428 VSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
VS +I+ L H+ + L LRSL+L C++T
Sbjct: 421 VSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 453
>gi|359464005|ref|ZP_09252568.1| internalin A protein [Acaryochloris sp. CCMEE 5410]
Length = 624
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 154/564 (27%), Positives = 250/564 (44%), Gaps = 130/564 (23%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWM-DVIASQGSSLLS------VDLSGSDVTDSGLI 75
+SL+ L D + QYP ++ ++ D+++ + S + LSG DVT +
Sbjct: 55 LSLQGVDGHELVDASIEQYPHLSALYLFDIVSPEIVPFASLPGLSTIALSGQDVTATS-- 112
Query: 76 HLKDCSNLQSL--------DFNFCI-------------QISDGGLEHLRGLSNLTSLSFR 114
+L+ +NL ++ D++F QI+D + ++ L LTSL
Sbjct: 113 YLQQATNLTTVYLKTTHISDYSFLSDLKNLTHLDLSNNQIAD--ISFIQDLKQLTSLGLA 170
Query: 115 RNNAITAQGMK----------------AFAGLINLVKL-DLERCTRIHGGLVNLKGLMKL 157
N + G+K ++ L+N +L L R GL L+ L L
Sbjct: 171 ANKIVDISGLKDLTTLNSLNLRSNAIDDYSVLLNFKELSQLTVSVREATGLAFLQDLRGL 230
Query: 158 ESLNIKWCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTD--- 194
L++ + + I+D SD+ LS L L L +S +K++D
Sbjct: 231 TYLDLSYNHWISDISVLRHLPKLTHLDLGSNQISDIAVLSDLPQLTHLSLSANKISDLSV 290
Query: 195 -----------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN--- 234
+ IA L+ LQ LT L++ V+ + +L L +L LN
Sbjct: 291 LQTLQGLESLDISANEIADIAILQNLQGLTQLDISSNDVSD--ISALQDLTTLTQLNVSS 348
Query: 235 --------------LNRCQLSDDGCEKFSKIGSLKV---LNLGFNEITDECLVHLKGLTN 277
L +SD+ + S + L LNL +N+++D + L+ L
Sbjct: 349 NEVIDYSVLQGLTELTNLDVSDNQLSEISDLQGLHALTSLNLSYNQLSDISV--LQDLKQ 406
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L +LNL + D + L +L ++NLSFT I+D L L GL L SL+L + QI
Sbjct: 407 LATLNLSYNPVSDIAV--LQNFKDLTTLNLSFTQITD--LSTLQGLKGLTSLDLHSNQIR 462
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D ++AL L GL L++ +++D A LRN K L SL + ++D + ++DL+
Sbjct: 463 D--ISALQDLKGLYRLNVSDNQLSDISA--LRNLKGLFSLNLSINQISD--IAALQDLTR 516
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
LT LN S N L+D + ++ GLT L SL++ ++I A + L+ + L SL L V
Sbjct: 517 LTSLNASHN-RLSD--ISVLQGLTRLNSLDLGANQI--ADISVLQNIPGLFSLDLRFSDV 571
Query: 458 TA-NDIKRLQSRDL-PNLVSFRPE 479
+ D K L S +L N +S PE
Sbjct: 572 SVFQDFKGLTSLNLSSNQISSVPE 595
>gi|290972233|ref|XP_002668860.1| predicted protein [Naegleria gruberi]
gi|284082393|gb|EFC36116.1| predicted protein [Naegleria gruberi]
Length = 296
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 159/320 (49%), Gaps = 29/320 (9%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L +LN++ N I + K +S L N+ +L IS + + G Y+ +++LT L +
Sbjct: 1 MKQLTNLNVRH-NDIDEEGAKYISELMNVSTLDISGNSINKRGAKYIGEMKQLTDLGMYC 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
C + +S+L L +L++N + D+G + +I L L++ N+
Sbjct: 60 CSIGVEGTKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSICDNK---------- 109
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
IG EG+ + L NL + +S I D + ++ ++ L L++ +
Sbjct: 110 --------------IGSEGVKYIGQLKNLLKLYVSCNEIGDNGAQFISEMNQLTKLDISS 155
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
IT G+ ++ + L L + I GA ++ K L SLE+ + G K++
Sbjct: 156 VNITPIGIKYISKMEHLIDLMISDNNIDSMGAKHISQMK-LTSLEVYNNTIDVEGAKYLS 214
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
++ LT L +S+N + DK ++ +SG+ L SL+++ ++I+ G +++ +KNL L++
Sbjct: 215 EMEQLTNLEISKN-EIGDKGVQFLSGMKQLTSLDINENKISDVGAKYILEMKNLIDLSVF 273
Query: 454 SCKVTANDIKRLQSRDLPNL 473
+++ + I+RL R++ L
Sbjct: 274 DNEISEDIIERL--REMKQL 291
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 150/310 (48%), Gaps = 25/310 (8%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLE 158
+ LT+L+ R N+ I +G K + L+N+ LD I G +N +G + +L
Sbjct: 1 MKQLTNLNVRHND-IDEEGAKYISELMNVSTLD------ISGNSINKRGAKYIGEMKQLT 53
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L + +C I K +S L L L I+ + + D G Y+ +++LT L++ + +
Sbjct: 54 DLGM-YCCSIGVEGTKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSICDNKIGS 112
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ + L +L L ++ ++ D+G + S++ L L++ IT + ++ + +L
Sbjct: 113 EGVKYIGQLKNLLKLYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHL 172
Query: 279 ESL-----NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L N+DS G ++ LT+LE N I + L+ + L +L +
Sbjct: 173 IDLMISDNNIDSMGAKH---ISQMKLTSLEVYN---NTIDVEGAKYLSEMEQLTNLEISK 226
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+I D G+ L+ + LT LD+ +I+D GA Y+ KNL L + +++ ++ ++
Sbjct: 227 NEIGDKGVQFLSGMKQLTSLDINENKISDVGAKYILEMKNLIDLSVFDNEISEDIIERLR 286
Query: 394 DLSSLTLLNL 403
++ LT L++
Sbjct: 287 EMKQLTYLDI 296
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 136/297 (45%), Gaps = 32/297 (10%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++D+SG+ + G ++ + L L +C I G +++ L+ LT LS NN I
Sbjct: 30 TLDISGNSINKRGAKYIGEMKQLTDLGM-YCCSIGVEGTKYISSLNQLTHLSININN-IG 87
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G K + L DL C N I +K + L
Sbjct: 88 DEGAKYIGQIKQLT--DLSICD-----------------------NKIGSEGVKYIGQLK 122
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL L +SC+++ D+G ++ + +LT L++ +T + +S + L L ++ +
Sbjct: 123 NLLKLYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHLIDLMISDNNI 182
Query: 241 SDDGCEKFS--KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
G + S K+ SL+V N N I E +L + L +L + IGD+G+ L+G
Sbjct: 183 DSMGAKHISQMKLTSLEVYN---NTIDVEGAKYLSEMEQLTNLEISKNEIGDKGVQFLSG 239
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+ L S++++ ISD + + + +L L++ +I++ + L + LT+LD+
Sbjct: 240 MKQLTSLDINENKISDVGAKYILEMKNLIDLSVFDNEISEDIIERLREMKQLTYLDI 296
>gi|386333663|ref|YP_006029833.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334196112|gb|AEG69297.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 629
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 143/485 (29%), Positives = 209/485 (43%), Gaps = 54/485 (11%)
Query: 2 LPRDISQQIFNEL--VYSRCLTEVSLE------------AFRDCALQDLCLGQYPGVNDK 47
LP ++ QQI + R + EV+ E R+ A+ LG+YP +
Sbjct: 91 LPPELWQQIGSSAGARPRRAMREVNRELRNASRAVVTHLTIRNPAMFG-QLGKYPALKSV 149
Query: 48 W------MDVIASQGSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
++ + + + +D+S GS V+++GL L L+SL N I+I G
Sbjct: 150 RFKGALTLEALKALPPGVEHLDISRCTGSGVSNAGLALLA-TRPLKSLSLN-GIEIDAEG 207
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L ++LTSLS +I + A A ++ LDL G L G L
Sbjct: 208 ARLLATCTSLTSLSLT-GCSIGDRAATALARSRSIASLDLSVNMIGPDGARALAG-APLA 265
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
SLN+ N I D L+ LKSL S + + D+G+ LT LNL G +
Sbjct: 266 SLNLH-NNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNAVLTQLNLAGNMIGP 324
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVH---- 271
A +L SL L+L+ +L D G + + SL LNL NEI D E L
Sbjct: 325 AGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLTSLNLRHNEIGDDGTEALARNTTL 384
Query: 272 -----------------LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
L G T L L+L C I G L T+L S++L I D
Sbjct: 385 KSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGD 444
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
R +A +L L+L I D G AL LT L+L+G + D GAA L + L
Sbjct: 445 SGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAHHPRL 504
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
SL + + G +H+ ++LT L+LS+N + + + +S T L +LNVS++ I
Sbjct: 505 TSLNLGRNRIGPNGAQHLAKSATLTELDLSEN-RIGPEGADALSLSTVLTTLNVSDNAIG 563
Query: 435 SAGLR 439
G R
Sbjct: 564 EKGAR 568
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 158/407 (38%), Gaps = 46/407 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE-----------HLRGL 105
+SL S+ L+G + D L ++ SLD + + DG H G+
Sbjct: 215 TSLTSLSLTGCSIGDRAATALARSRSIASLDLSVNMIGPDGARALAGAPLASLNLHNNGI 274
Query: 106 SNLTSLSFR----------RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
+ +L+ NN I G+ FA L +L+L G L+
Sbjct: 275 GDEGALALATSGTLKSLNASNNGIGDAGVLGFADNAVLTQLNLAGNMIGPAGARALRCNT 334
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L L++ N + D+ + L+ +L SL + +++ D G L L LNL P
Sbjct: 335 SLTELDLS-TNRLGDAGAQVLAANRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLSYNP 393
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ +L +L L+L C + G ++ SL L+LG N
Sbjct: 394 IGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNR------------ 441
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
IGD G + L ++LS I D + LAG SL SLNL +
Sbjct: 442 ------------IGDSGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNE 489
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+ D G AAL LT L+L RI +GA +L L L++ + G +
Sbjct: 490 VDDDGAAALAHHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRIGPEGADALSLS 549
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ LT LN+S N T L SL+ N+ + AG + L+
Sbjct: 550 TVLTTLNVSDNAIGEKGARAFAEKSTSLTSLDARNNGMGEAGAKMLE 596
>gi|327272147|ref|XP_003220847.1| PREDICTED: f-box/LRR-repeat protein 14-like [Anolis carolinensis]
Length = 400
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 172/334 (51%), Gaps = 39/334 (11%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ ++ESLN+ C +TD+ + ++ +++L++L +S C ++TDS + YLKGL
Sbjct: 86 IQGMAEIESLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG 260
+ L L GC L L L LNL C+ LSD G IG L +
Sbjct: 146 EAL---ELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRHLSDVG------IGHLAGMTRS 196
Query: 261 FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSL 317
E G LE L L C + D L +L+ GL+ L +NLSF G ISD L
Sbjct: 197 AAE----------GCLGLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGGISDAGL 246
Query: 318 RKLAGLSSLKSLNLDA-RQITDTGLAAL-TSLTGLTHLDL-FGARITDSGAAYL-RNFKN 373
L+ +S L+ LNL + I+DTG+ L T L+ LD+ F ++ D AY+ +
Sbjct: 247 LHLSHMSCLRVLNLRSCDNISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIAQGLDG 306
Query: 374 LRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN- 430
LRSL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++
Sbjct: 307 LRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC 366
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+RIT GL + L L+ L L ++T ++ R
Sbjct: 367 TRITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 164/327 (50%), Gaps = 32/327 (9%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM + L+L C + G + + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------EIESLNLSGCYNLTDNGLGHAFVAEISSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L L++L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKGLEALELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRH 181
Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
+ A + +A G L L L CQ LSD + S+ + L+ LNL F I
Sbjct: 182 LSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL-TGLTNLESINLSFT-GISDGSLRKLA 321
+D L+HL ++ L LNL SC I D G+++L TG L +++SF + D SL +A
Sbjct: 242 SDAGLLHLSHMSCLRVLNLRSCDNISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIA 301
Query: 322 -GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSL 377
GL L+SL+L + I+D G+ + + GL L++ RITD G + + L +
Sbjct: 302 QGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGI 361
Query: 378 EICG-GGLTDAGVKHIKDLSSLTLLNL 403
++ G +T G++ I L L +LNL
Sbjct: 362 DLYGCTRITKRGLERITQLPCLKVLNL 388
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 172/343 (50%), Gaps = 72/343 (20%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++LSG ++TD+GL H + + S+L++L+ + C QI+D L +
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRI--------------- 138
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AQ +K L L+L C+ I G L+ GL +L+SLN++ C ++D +
Sbjct: 139 ---AQYLKG------LEALELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRHLSDVGIGH 189
Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
L+G+T L+ L + C K++D + +L +GL +L LNL C ++ A L L
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGGISDAGLLHL 249
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
S + L LNL C +SD G + GSL++ L++ F +++ D+ L ++ +GL L
Sbjct: 250 SHMSCLRVLNLRSCDNISDTGIMHLAT-GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLR 308
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITD 338
SL+L SC I DEG+ + +R++ G L++LN+ +ITD
Sbjct: 309 SLSLCSCHISDEGINRM--------------------VRQMHG---LRTLNIGQCVRITD 345
Query: 339 TGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 379
GL + L+ LT +DL+G RIT G + L+ L +
Sbjct: 346 KGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNL 388
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 48/241 (19%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--LTGLTNLESINLSF-TGISDGSLRKLA------ 321
++G+ +ESLNL C + D GL + + +++L ++NLS I+D SL ++A
Sbjct: 86 IQGMAEIESLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 322 ---------------------GLSSLKSLNLDA-RQITDTGLAALTSLT--------GLT 351
GL LKSLNL + R ++D G+ L +T GL
Sbjct: 146 EALELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 352 HLDLFGA-RITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L L +++D +L R LR L + CGG ++DAG+ H+ +S L +LNL
Sbjct: 206 QLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGG-ISDAGLLHLSHMSCLRVLNLRSCD 264
Query: 408 NLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKR 464
N++D + L +G L L+VS ++ L ++ + L LRSL+L SC ++ I R
Sbjct: 265 NISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINR 324
Query: 465 L 465
+
Sbjct: 325 M 325
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 51/202 (25%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
++D+GL+HL S L+ L+ C ISD G+ HL
Sbjct: 241 ISDAGLLHLSHMSCLRVLNLRSCDNISDTGIMHL------------------------AT 276
Query: 129 GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
G + L LD+ C ++ + +GL L SL++ C+ + + + + L++L
Sbjct: 277 GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLN 336
Query: 187 I-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
I C ++TD G+ + + L +LT ++L GC +++ G
Sbjct: 337 IGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRG 373
Query: 245 CEKFSKIGSLKVLNLGFNEITD 266
E+ +++ LKVLNLG ++T+
Sbjct: 374 LERITQLPCLKVLNLGLWQMTE 395
>gi|290994342|ref|XP_002679791.1| predicted protein [Naegleria gruberi]
gi|284093409|gb|EFC47047.1| predicted protein [Naegleria gruberi]
Length = 300
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 131/276 (47%), Gaps = 2/276 (0%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL SL IS + + + G Y+ L LT+L++ G + A + +S + + L++ L
Sbjct: 4 NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
+G + S++ L L + N I +E + GL L L++ IGD G +L+ L
Sbjct: 64 GKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSELK 123
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
L +N+ I D ++ + + L L++ I G ++ + L LD+ I
Sbjct: 124 QLTRLNIGENNIGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCNI 183
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
GA + K L L I D G K I D+ LT L L NC+++D + +S +
Sbjct: 184 DPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLELF-NCDISDIGAKCVSEM 242
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+ L +L++ + ++ G+R + +K L L++ S K
Sbjct: 243 SKLTNLDIGENNLSDEGVRAVSNMK-LMILSVSSSK 277
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 140/294 (47%), Gaps = 26/294 (8%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
NLTSL+ RN I +G K + L NL LD+ + G ++ + ++ +L++ N
Sbjct: 4 NLTSLNISRN-WIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVG-LN 61
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+ K +S + L +L+I+ + + + G ++ GL++LT L
Sbjct: 62 NLGKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTEL----------------- 104
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
S+ + N+ D G + S++ L LN+G N I DE + H+ + L L++ +
Sbjct: 105 --SIHFNNI-----GDVGTKHLSELKQLTRLNIGENNIGDEGVKHILEMKQLTDLDISNN 157
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
I +G ++G+ L ++++ I +K++ + L LN+ Q D G ++
Sbjct: 158 NIRHKGSEYISGMNQLRILDINSCNIDPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISD 217
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+ LT L+LF I+D GA + L +L+I L+D GV+ + ++ + L
Sbjct: 218 MKQLTTLELFNCDISDIGAKCVSEMSKLTNLDIGENNLSDEGVRAVSNMKLMIL 271
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 1/181 (0%)
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
NL SLN+ IG+EG ++ L NL +++ I ++ + + +L++ +
Sbjct: 4 NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
G ++ + LT+L++ I + GA ++ K L L I + D G KH+ +L
Sbjct: 64 GKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSELK 123
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
LT LN+ +N N+ D+ ++ I + L L++SN+ I G ++ + LR L + SC
Sbjct: 124 QLTRLNIGEN-NIGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCN 182
Query: 457 V 457
+
Sbjct: 183 I 183
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 3/198 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L +++++ +++ + G + L L +F I D G +HL L LT L+
Sbjct: 72 SEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFN-NIGDVGTKHLSELKQLTRLNI 130
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G+K + L LD+ H G + G+ +L L+I CN I
Sbjct: 131 GENN-IGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCN-IDPIGA 188
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ +S + L L I+ ++ D G ++ +++LT L L C ++ +S + L L
Sbjct: 189 QKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLELFNCDISDIGAKCVSEMSKLTNL 248
Query: 234 NLNRCQLSDDGCEKFSKI 251
++ LSD+G S +
Sbjct: 249 DIGENNLSDEGVRAVSNM 266
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
+L SLN+ I + G ++ L LT LD+ G I +GA ++ K + +L + L
Sbjct: 4 NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
G K+I ++ LT L ++ N N+ ++ + ISGL L L++ + I G +HL L
Sbjct: 64 GKEGTKYISEMKQLTNLEINNN-NIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSEL 122
Query: 445 KNLRSLTLESCKVTANDIKRL 465
K L L + + +K +
Sbjct: 123 KQLTRLNIGENNIGDEGVKHI 143
>gi|218196286|gb|EEC78713.1| hypothetical protein OsI_18882 [Oryza sativa Indica Group]
Length = 601
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 120/449 (26%), Positives = 204/449 (45%), Gaps = 23/449 (5%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
LE F+ +++++ L + V+ +W+ + + L + L+ +V S + L S L
Sbjct: 65 LEVFQH-SVEEIDLSGHIAVDAEWLAYLGA-FRYLRVLKLADCKNVNSSAVWALSGMSTL 122
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
+ LD + C +ISD G++H+ + +L L + +T G+ A + LINL LDL
Sbjct: 123 KELDLSRCSKISDAGIKHIASIESLEKLHVSQT-GLTDNGVMAISSLINLRLLDLGGVRF 181
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L +L+ L +LE L+I W + IT+ L T+L L IS ++VT L L
Sbjct: 182 TDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNISWTRVT-----CLPIL 235
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
L LN+ C + + C L L L ++ + E FS I + L +
Sbjct: 236 LTLRCLNMSNCTIHSICNGEFQVLIHLEKLVISAASFGNID-EVFSSILPSSLTYLDMSS 294
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-TNLESINLSFTGISDGSLRKLAG 322
+ L L + NLE L+L I + + + + NL ++LS + ++ +L LAG
Sbjct: 295 CSSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLMFLSLSNSEVTSQALCVLAG 354
Query: 323 -LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-----GARITDS----GAAYLRNFK 372
+ SL +L+L +I D+ L ++ + L L+L G + +S + L K
Sbjct: 355 TVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELK 414
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
L SL + L D + + +L L L + L+D L +S + L+ L +
Sbjct: 415 YLESLNLNNTQLMDDVIPPLASFRALKYLFLKSDF-LSDPALHALSSASNLIHLGFCGNI 473
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+++ GLR P LR L L C + D
Sbjct: 474 LSTTGLRKFVPPATLRMLDLSGCWILTGD 502
>gi|66807643|ref|XP_637544.1| hypothetical protein DDB_G0286583 [Dictyostelium discoideum AX4]
gi|60465980|gb|EAL64047.1| hypothetical protein DDB_G0286583 [Dictyostelium discoideum AX4]
Length = 722
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 119/366 (32%), Positives = 191/366 (52%), Gaps = 26/366 (7%)
Query: 47 KWMDVIASQGSSLLSVDLSG--SDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLR 103
K MD I + G+ + S+DLS + V + L++ K + L ++ F C ++D GL+ R
Sbjct: 309 KKMDQIVASGARIYSLDLSHQFAVVNNDFLLNCFKYMAELSNVYFRNCENLNDIGLQIFR 368
Query: 104 GLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLE 158
+ NL +L R +N IT G++ GL+NL +L L CT I GL L L+KL+
Sbjct: 369 QPNFEKNLKTLDLR-DNRITDVGIRNLKGLLNLEELYLGSTGCTDI--GLALLCNLLKLK 425
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 217
+L++ CN ITDS M + T LK L +S ++VTD GI + L L L + C +T
Sbjct: 426 TLDVSKCN-ITDSSMDIICRFTELKFLYLSGTQVTDKGINTISKLPNLIQLYVSNCLRIT 484
Query: 218 AACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 275
L L+ LG +L L++ + ++ +G + L+ L L G + I D + HL L
Sbjct: 485 NQSLFFLAYLGKTLKLLDIFQTKIGLNGFIQLRMFKQLQFLVLPGRDSINDATIGHLNSL 544
Query: 276 TNLESLNL-DSCGIGDEGLVNLTGLTNLESIN---LSFTGISDGS-LRKLAGLSSLKSLN 330
+NL L+L D I D L+ LTNL+S+ LS T ISD S + + + SL+ L+
Sbjct: 545 SNLRKLDLSDYRNISD-----LSPLTNLQSLTELLLSNTKISDNSIINSIKTMDSLEVLS 599
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L+ ++T G++ L +L + +I YL K+L+ L+I +TD +
Sbjct: 600 LNKTEVTTEGVSQLVNLNLTSLSLS-STKIDGKSLYYLGQMKSLQKLDISFNDITDNSMD 658
Query: 391 HIKDLS 396
++K ++
Sbjct: 659 YLKPIA 664
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 139/278 (50%), Gaps = 37/278 (13%)
Query: 220 CLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGL 275
C ++ L ++++ N C+ L+D G + F + +LK L+L N ITD + +LKGL
Sbjct: 341 CFKYMAELSNVYFRN---CENLNDIGLQIFRQPNFEKNLKTLDLRDNRITDVGIRNLKGL 397
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
NLE L L S G D GL L L L+++++S I+D S+ + + LK L L Q
Sbjct: 398 LNLEELYLGSTGCTDIGLALLCNLLKLKTLDVSKCNITDSSMDIICRFTELKFLYLSGTQ 457
Query: 336 ITDTGLAALTSLTGLTH--------------------------LDLFGARITDSGAAYLR 369
+TD G+ ++ L L LD+F +I +G LR
Sbjct: 458 VTDKGINTISKLPNLIQLYVSNCLRITNQSLFFLAYLGKTLKLLDIFQTKIGLNGFIQLR 517
Query: 370 NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
FK L+ L + G + DA + H+ LS+L L+LS N++D L ++ L L L +
Sbjct: 518 MFKQLQFLVLPGRDSINDATIGHLNSLSNLRKLDLSDYRNISD--LSPLTNLQSLTELLL 575
Query: 429 SNSRIT-SAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
SN++I+ ++ + +K + +L L+L +VT + +L
Sbjct: 576 SNTKISDNSIINSIKTMDSLEVLSLNKTEVTTEGVSQL 613
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 153/327 (46%), Gaps = 47/327 (14%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLL------------------------NLEGCPV 216
NLK+L + +++TD GI LKGL L L ++ C +
Sbjct: 375 NLKTLDLRDNRITDVGIRNLKGLLNLEELYLGSTGCTDIGLALLCNLLKLKTLDVSKCNI 434
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN--EITDECLVHLKG 274
T + +D + L +L L+ Q++D G SK+ +L L + N IT++ L L
Sbjct: 435 TDSSMDIICRFTELKFLYLSGTQVTDKGINTISKLPNLIQLYVS-NCLRITNQSLFFLAY 493
Query: 275 L-TNLESLNLDSCGIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL- 331
L L+ L++ IG G + L L+ + L I+D ++ L LS+L+ L+L
Sbjct: 494 LGKTLKLLDIFQTKIGLNGFIQLRMFKQLQFLVLPGRDSINDATIGHLNSLSNLRKLDLS 553
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
D R I+D L+ LT+L LT L L +I+D+ + + + K + SLE+ T+ +
Sbjct: 554 DYRNISD--LSPLTNLQSLTELLLSNTKISDN--SIINSIKTMDSLEVLSLNKTEVTTEG 609
Query: 392 IKDLSSLTLLNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN---- 446
+ L +L L +LS + D K+L + + L L++S + IT + +LKP+ +
Sbjct: 610 VSQLVNLNLTSLSLSSTKIDGKSLYYLGQMKSLQKLDISFNDITDNSMDYLKPIADTLSH 669
Query: 447 --------LRSLTLESCKVTANDIKRL 465
RSL + + K+ +K +
Sbjct: 670 IDLRGTDTFRSLHMFNEKIVRPPVKNI 696
>gi|254417119|ref|ZP_05030865.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176097|gb|EDX71115.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 414
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 166/291 (57%), Gaps = 29/291 (9%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D++PLSGLTNL++L + + ++D ++ L L L ++L +T ++ LS L +L
Sbjct: 86 TDIRPLSGLTNLRTLYLGSNLISD--VSPLVELTNLKKVDLSHNQITN--VNPLSGLTNL 141
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
+L+L+R Q+++ S++ +L+ L+LG N+IT+ + L GLTNLE LNL I +
Sbjct: 142 EWLDLSRNQITN--VNPLSELTNLEWLDLGHNQITN--ISPLSGLTNLEFLNLSHNQITN 197
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
++ + L NL+ I L+ I+D + LA L++L+ ++L+ QI T + L LT L
Sbjct: 198 FRII--SALINLKDIALNNNQITD--IYPLAELTNLRRISLNNNQI--TTVRPLVQLTNL 251
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L + +ITD L NLR L + +TD ++ + L++LT L LS N +T
Sbjct: 252 ESLYIGNNQITDIRP--LSQLTNLRQLALNHNQITD--IRPLSQLTNLTGLALSHN-QIT 306
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT---LESCKVT 458
D + +S LT L ++++ ++IT ++ PL NL +LT L S +VT
Sbjct: 307 D--VRPLSQLTNLEWIHLNYNQIT-----NITPLVNLNNLTGLDLHSNQVT 350
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 144/295 (48%), Gaps = 65/295 (22%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLS + +T+ L + +NL+ LD QI++ + L GL+NL L+ N IT
Sbjct: 144 LDLSRNQITNVN--PLSELTNLEWLDLGHN-QITN--ISPLSGLTNLEFLNLSHN-QIT- 196
Query: 122 QGMKAFAGLINL--VKLDLERCTRIH--GGLVNLK----------------GLMKLESLN 161
+ + LINL + L+ + T I+ L NL+ L LESL
Sbjct: 197 -NFRIISALINLKDIALNNNQITDIYPLAELTNLRRISLNNNQITTVRPLVQLTNLESLY 255
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
I N ITD ++PLS LTNL+ L ++ +++TD ++ L +LT NL G
Sbjct: 256 IG-NNQITD--IRPLSQLTNLRQLALNHNQITD-----IRPLSQLT--NLTG-------- 297
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
L L+ Q++D S++ +L+ ++L +N+IT+ + L L NL L
Sbjct: 298 -----------LALSHNQITD--VRPLSQLTNLEWIHLNYNQITN--ITPLVNLNNLTGL 342
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+L S + + + L L NL+ I+L F I+D S L+GL++L L L+ I
Sbjct: 343 DLHSNQVTN--VTPLVQLKNLKWIDLRFNQITDIS--SLSGLTNLMRLYLEGNPI 393
>gi|320165725|gb|EFW42624.1| hypothetical protein CAOG_07756 [Capsaspora owczarzaki ATCC 30864]
Length = 880
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 156/370 (42%), Gaps = 11/370 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-L 151
QI+ GL+ L L N IT AFAGL LV+L L RI VN
Sbjct: 430 QITTVAANAFTGLTALVQLQLYGNQ-ITTIPASAFAGLSALVQLYL-YSNRITAIFVNAF 487
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI---SCSKVTDSGIAYLKGLQKLTL 208
GL L L + N IT +GLT + L + S S V S L LQ L L
Sbjct: 488 TGLTHLSLLELS-NNQITSLPANAFAGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALYL 546
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
N + +T ++ + L +L L+L R Q++ F+ + +L L L N IT
Sbjct: 547 YNNQ---ITTVAANAFTGLTALVQLHLYRNQITTIPASAFAGLSALVQLYLNSNRITTIF 603
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
LT L L++ + I TGLT + ++L S GL++L++
Sbjct: 604 ANAFPSLTKLTYLDISNNQITSLPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQA 663
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L L QI+ A TSLT L L L+G IT A L L++ L+
Sbjct: 664 LFLFNNQISSVAANAFTSLTALIQLQLYGNLITTIPAGAFSGLSKLNLLQLYNNWLSAIP 723
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
L++LT L L N +T SGLT L+ L++ ++IT+ L L+
Sbjct: 724 SSAFTGLTALTQLRLDTN-QITTVPANAFSGLTALIYLSLYGNQITTISASAFAGLTALQ 782
Query: 449 SLTLESCKVT 458
+L L +T
Sbjct: 783 ALYLNDNTIT 792
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 116/471 (24%), Positives = 197/471 (41%), Gaps = 50/471 (10%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQG----SSLLSVDLSGSDVTD--------- 71
L A A L Y +N+ + +A+ ++L+ + L G+ +T
Sbjct: 407 LSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQLQLYGNQITTIPASAFAGL 466
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S L+ L SN +I+ + GL++L+ L NN IT+ AFAGL
Sbjct: 467 SALVQLYLYSN----------RITAIFVNAFTGLTHLSLLELS-NNQITSLPANAFAGLT 515
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+ +L L + GL L++L + + N IT +GLT L L + ++
Sbjct: 516 AMTQLSLYNNSLSAVPSSAFTGLTALQALYL-YNNQITTVAANAFTGLTALVQLHLYRNQ 574
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+T + GL L L L +T ++ +L L YL+++ Q++ F+ +
Sbjct: 575 ITTIPASAFAGLSALVQLYLNSNRITTIFANAFPSLTKLTYLDISNNQITSLPANAFTGL 634
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL---- 307
++ L+L N + GLT L++L L + I T LT L + L
Sbjct: 635 TAMTQLHLYNNLFSTVPSSAFTGLTALQALFLFNNQISSVAANAFTSLTALIQLQLYGNL 694
Query: 308 -------SFTGISDGSLRKL-------------AGLSSLKSLNLDARQITDTGLAALTSL 347
+F+G+S +L +L GL++L L LD QIT A + L
Sbjct: 695 ITTIPAGAFSGLSKLNLLQLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGL 754
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
T L +L L+G +IT A+ L++L + +T L++L L+LS +
Sbjct: 755 TALIYLSLYGNQITTISASAFAGLTALQALYLNDNTITTIAANAFAGLTALNWLDLS-DS 813
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+T + S L L LN+ N+ +++ L L LT+ ++T
Sbjct: 814 QITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRIT 864
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 174/405 (42%), Gaps = 10/405 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L+ + L G+ +T L S L L + + QI+ GL+ LT L N
Sbjct: 299 TALVQLQLYGNQITTIPSSALTGLSALTQL-YLYNNQITSVPANGFSGLTALTDLRLS-N 356
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDM 173
N IT+ AF GL L LDL + T I G + L L +L N W + + S
Sbjct: 357 NTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLFN-NWLSAVPSSAF 415
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+GLT L L ++ +++T GL L L L G +T + + L +L L
Sbjct: 416 ---TGLTALIYLYLNNNQITTVAANAFTGLTALVQLQLYGNQITTIPASAFAGLSALVQL 472
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L +++ F+ + L +L L N+IT GLT + L+L + +
Sbjct: 473 YLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPANAFAGLTAMTQLSLYNNSLSAVPS 532
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
TGLT L+++ L I+ + GL++L L+L QIT +A L+ L L
Sbjct: 533 SAFTGLTALQALYLYNNQITTVAANAFTGLTALVQLHLYRNQITTIPASAFAGLSALVQL 592
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
L RIT A + L L+I +T L+++T L+L N T +
Sbjct: 593 YLNSNRITTIFANAFPSLTKLTYLDISNNQITSLPANAFTGLTAMTQLHLYNNLFSTVPS 652
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+GLT L +L + N++I+S L L L L +T
Sbjct: 653 -SAFTGLTALQALFLFNNQISSVAANAFTSLTALIQLQLYGNLIT 696
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 119/418 (28%), Positives = 171/418 (40%), Gaps = 52/418 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+ W+ I S + L+ LI L+ LD N QI+
Sbjct: 234 LNNNWLSAIPSSAFTGLT-----------ALIQLR-------LDTN---QITTVPANAFS 272
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLN 161
GL+ L L + NN IT AF+G LV+L L + T I L GL L L
Sbjct: 273 GLTALIYL-YLYNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSA--LTGLSALTQLY 329
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPVTA 218
+ + N IT SGLT L L++S + +T GL KLT L+L + + A
Sbjct: 330 L-YNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLSLNQLTSIPA 388
Query: 219 ACLDSLSALG---------------------SLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L+AL +L YL LN Q++ F+ + +L L
Sbjct: 389 GAFSGLTALTQLLLFNNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQL 448
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSL 317
L N+IT GL+ L L L S I + TGLT+L + LS I+
Sbjct: 449 QLYGNQITTIPASAFAGLSALVQLYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPA 508
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
AGL+++ L+L ++ +A T LT L L L+ +IT A L L
Sbjct: 509 NAFAGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALYLYNNQITTVAANAFTGLTALVQL 568
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
+ +T LS+L L L+ N +T LT L L++SN++ITS
Sbjct: 569 HLYRNQITTIPASAFAGLSALVQLYLNSN-RITTIFANAFPSLTKLTYLDISNNQITS 625
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 114/414 (27%), Positives = 167/414 (40%), Gaps = 51/414 (12%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GL+ L L + NN I + AF+GL L L L I
Sbjct: 142 QITTVPSSAFTGLTALQIL-YLHNNQIATVAINAFSGLTALQTLYLYNNQIITVATNAFS 200
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L+ L + N IT SGL+ L +LQ++ + ++ + GL L L L+
Sbjct: 201 GLAALQVLRLD-TNQITTVPANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALIQLRLD 259
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+T ++ S L +L YL L Q++ FS +L L L N+IT L
Sbjct: 260 TNQITTVPANAFSGLTALIYLYLYNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSAL 319
Query: 273 KGLTNLESLNLDSCGI------GDEGLVNL------------------TGLTNLESINLS 308
GL+ L L L + I G GL L TGLT L ++LS
Sbjct: 320 TGLSALTQLYLYNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLS 379
Query: 309 ---FTGISDGSLRKL---------------------AGLSSLKSLNLDARQITDTGLAAL 344
T I G+ L GL++L L L+ QIT A
Sbjct: 380 LNQLTSIPAGAFSGLTALTQLLLFNNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAF 439
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
T LT L L L+G +IT A+ L L + +T V L+ L+LL LS
Sbjct: 440 TGLTALVQLQLYGNQITTIPASAFAGLSALVQLYLYSNRITAIFVNAFTGLTHLSLLELS 499
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
N +T +GLT + L++ N+ +++ L L++L L + ++T
Sbjct: 500 NN-QITSLPANAFAGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALYLYNNQIT 552
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 142/340 (41%), Gaps = 15/340 (4%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
QI+ GL+ L L RN IT AFAGL LV+L L R T I
Sbjct: 550 QITTVAANAFTGLTALVQLHLYRNQ-ITTIPASAFAGLSALVQLYLNSNRITTIFANA-- 606
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLT 207
L KL L+I N IT +GLT + L + S V S L LQ L
Sbjct: 607 FPSLTKLTYLDIS-NNQITSLPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQALF 665
Query: 208 LLNLEGCPVTAACLDSLSALGSL-FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L N + V A SL+AL L Y NL ++ FS + L +L L N ++
Sbjct: 666 LFNNQISSVAANAFTSLTALIQLQLYGNL----ITTIPAGAFSGLSKLNLLQLYNNWLSA 721
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
GLT L L LD+ I +GLT L ++L I+ S AGL++L
Sbjct: 722 IPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLSLYGNQITTISASAFAGLTAL 781
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
++L L+ IT A LT L LDL ++IT A + L L + L+
Sbjct: 782 QALYLNDNTITTIAANAFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSA 841
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L++LT L + N +T + +GL LV L
Sbjct: 842 VPTSAFTGLTALTQLTMYGN-RITTISANAFTGLNALVQL 880
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 141/335 (42%), Gaps = 32/335 (9%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+ T+ + ++N IT+ AF GL L + L+
Sbjct: 56 GIPATTTTLYLQSNQITSISSSAFTGLTALTYMRLD------------------------ 91
Query: 164 WCNCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
N IT SGL+ L +LQ++ S + S L L +L L N + V ++
Sbjct: 92 -TNQITTVPANAFSGLSTLNTLQLNNNWLSAIPSSAFTGLTALIQLLLNNNQITTVPSSA 150
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L+AL L+ L+ Q++ FS + +L+ L L N+I GL L+
Sbjct: 151 FTGLTALQILY---LHNNQIATVAINAFSGLTALQTLYLYNNQIITVATNAFSGLAALQV 207
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L LD+ I +GL+ L ++ L+ +S GL++L L LD QIT
Sbjct: 208 LRLDTNQITTVPANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALIQLRLDTNQITTVP 267
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
A + LT L +L L+ +IT L L++ G +T + LS+LT
Sbjct: 268 ANAFSGLTALIYLYLYNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSALTGLSALTQ 327
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L L N +T SGLT L L +SN+ ITS
Sbjct: 328 LYLYNN-QITSVPANGFSGLTALTDLRLSNNTITS 361
>gi|414878156|tpg|DAA55287.1| TPA: hypothetical protein ZEAMMB73_170021 [Zea mays]
Length = 663
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 135/473 (28%), Positives = 224/473 (47%), Gaps = 48/473 (10%)
Query: 34 QDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCI 92
+ +CL + GV + ++ + + L +VDLS D L + L+ L + C+
Sbjct: 111 RSVCLARANGVGWRGLEALVAACPKLEAVDLSHCVSAGDREAAALAAAAGLRELRLDKCL 170
Query: 93 QISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN 150
++D GL + G L LS + I+ G+ A L L++ +G L +
Sbjct: 171 AVTDMGLAKVAVGCPRLEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLRS 230
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIA-------YLK 201
+ L +LE L + C+CI D ++ LS G +L+S+ +S C VT G+A +L+
Sbjct: 231 ISSLERLEELAMVCCSCIDDEGLELLSKGSDSLQSVDVSRCDHVTSHGLASLIDGRNFLQ 290
Query: 202 GL---------------------QKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQ 239
L + LT L L+G V+ + L+++ + L + L++C
Sbjct: 291 KLYAADCLHEIGQRFVSKLATLKETLTTLKLDGLEVSDSLLEAIGESCNKLVEIGLSKCS 350
Query: 240 -LSDDGCEKF-SKIGSLKVLNLG-FNEITDECLVHLKG-LTNLESLNLDSCG-IGDEGLV 294
++D+G ++ L+ ++L N T+ L + G LE L L+SC I ++GL
Sbjct: 351 GVTDEGISSLVARCSDLRTIDLTCCNLSTNNALDSIAGNCKMLECLRLESCSLINEKGLK 410
Query: 295 NL-TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LT 351
+ T NL+ I+L+ G+ D +L LA S L+ L L I+D G+A ++S G L
Sbjct: 411 RIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRVLKLGLCSSISDKGIAFISSNCGKLV 470
Query: 352 HLDLFG-ARITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
LDL+ + ITD G A L N K ++ L +C +TD G+ H+ L LT L L
Sbjct: 471 ELDLYRCSSITDDGLAALANGCKRIKLLNLCYCNKITDTGLGHLGSLEELTNLELRCLVR 530
Query: 409 LTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 458
+T + ++ G L+ L++ + AGL L NLR LT+ C+VT
Sbjct: 531 ITGIGISSVAIGCKNLIELDLKRCYSVDDAGLWALARYALNLRQLTISYCQVT 583
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 125/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K + IA+ +L +DL+ V D+ L HL CS L+ L C ISD G+ +
Sbjct: 404 INEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRVLKLGLCSSISDKGIAFIS 463
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R ++IT G+ A A G +++ LN+
Sbjct: 464 SNCGKLVELDLYRCSSITDDGLAALAN-----------------------GCKRIKLLNL 500
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITD+ + L L L +L++ C ++T GI+ V C
Sbjct: 501 CYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGIS----------------SVAIGC- 543
Query: 222 DSLSALGSLFYLNLNRCQLSDD-GCEKFSKIG-SLKVLNLGFNEITDECLVHLKGLTNLE 279
+L L+L RC DD G ++ +L+ L + + ++T L HL L++L
Sbjct: 544 ------KNLIELDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 595
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L D +V+L+ ++ +E ++ G L+KL L LK++
Sbjct: 596 CLQ-------DIKMVHLSWVS-IEGFEIALRAAC-GRLKKLKMLCGLKTV 636
>gi|343419347|emb|CCD19427.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1478
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 206/417 (49%), Gaps = 63/417 (15%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL +L IT +
Sbjct: 624 TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLISNLRTLDLSHCTGIT--DVPP 674
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------- 170
+ LI L KLDL CT I + L L +LE+LN+ +C ITD
Sbjct: 675 LSMLIRLEKLDLSGCTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLM 733
Query: 171 -----SDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+D+ PLS +++L +L +S C+ +TD ++ L L +L L+L GC + L
Sbjct: 734 YCTGITDVSPLSKMSSLYTLNLSYCTGITD--VSPLSMLIRLETLDLTGCTGITD-VSPL 790
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
S L L LNL C D SK+ L+ LNL + ITD + L L+ LE+LNL
Sbjct: 791 SKLSRLETLNLRYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNL 847
Query: 284 DSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTG 340
C GI D ++L ++NL +++LS TGI+D S L+ +S+L SL L ITD
Sbjct: 848 MYCTGITDVSPLSL--ISNLRTLDLSHCTGITDVS--PLSLMSNLCSLYLSHCTGITD-- 901
Query: 341 LAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSL 398
+ L+ L L LDL G ITD + L L +L + G+TD V + LS L
Sbjct: 902 VPPLSMLIRLEKLDLSGCTGITD--VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRL 957
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK---NLRSLTL 452
LNL +TD + +S L+ L +LN+ + G+ + PL NLR+L L
Sbjct: 958 ETLNLMYCTGITD--VSPLSKLSRLETLNL----MYCTGITDVSPLSDFINLRTLDL 1008
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 196/379 (51%), Gaps = 40/379 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +S+L +L+ IT + + LI L LDL
Sbjct: 725 SRLETLNLMYCTGITD--VSPLSKMSSLYTLNLSYCTGIT--DVSPLSMLIRLETLDLTG 780
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAY 199
CT I + L L +LE+LN+++C IT D+ PLS L+ L++L + C+ +TD ++
Sbjct: 781 CTGI-TDVSPLSKLSRLETLNLRYCTGIT--DVSPLSKLSRLETLNLMYCTGITD--VSP 835
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L +L LNL C + LS + +L L+L+ C D S + +L L L
Sbjct: 836 LSKLSRLETLNLMYCTGITD-VSPLSLISNLRTLDLSHCTGITD-VSPLSLMSNLCSLYL 893
Query: 260 GF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGS 316
ITD + L L LE L+L C GI D + L+ L+ LE++NL + TGI+D S
Sbjct: 894 SHCTGITD--VPPLSMLIRLEKLDLSGCTGITD--VSPLSKLSRLETLNLMYCTGITDVS 949
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYLRNFK 372
L+ LS L++LNL + TG+ ++ L+ L+ L+ ++ ITD + L +F
Sbjct: 950 --PLSKLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSDFI 1001
Query: 373 NLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
NLR+L++ G+TD V + L L L+LS +TD +S L+ L+ LNV
Sbjct: 1002 NLRTLDLSFYTGITD--VSPLSMLIRLENLSLSNIAGITD-----VSPLSTLIRLNVLYL 1054
Query: 432 RITSAGLRHLKPLKNLRSL 450
G+ + PL L SL
Sbjct: 1055 S-GCTGITDVSPLSKLSSL 1072
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 203/410 (49%), Gaps = 58/410 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGG------------LEHLRGLSNLTSLS-FRRNNAITAQG 123
L D NL++LD +F I+D L ++ G+++++ LS R N + G
Sbjct: 997 LSDFINLRTLDLSFYTGITDVSPLSMLIRLENLSLSNIAGITDVSPLSTLIRLNVLYLSG 1056
Query: 124 ------MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ + L +L LDL CT I + L L +LE+LN+ +C IT D+ PLS
Sbjct: 1057 CTGITDVSPLSKLSSLRTLDLSHCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLS 1113
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
++NL++L +S C+ +TD ++ L + L L L C + LS L L L+L+
Sbjct: 1114 LISNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGITD-VPPLSMLIRLEKLDLS 1170
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLV 294
C D SK+ L+ LNL + ITD + L ++NL SL L C GI D +
Sbjct: 1171 GCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VS 1225
Query: 295 NLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
L+ L LE ++LS TGI+D S L+ LS L++LNL + TG+ ++ L+ L+ L
Sbjct: 1226 PLSMLIRLEKLDLSGCTGITDVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLSRL 1279
Query: 354 D----LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 408
+ ++ ITD L NL SL + G+TD V + LS L LNL
Sbjct: 1280 ETLNLMYCTGITDVSPLSL--MSNLCSLYLSHCTGITD--VPPLSKLSRLETLNLMYCTG 1335
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL---KNLRSLTLESC 455
+TD + +S L+ L +LN+ + G+ + PL NLR+L L C
Sbjct: 1336 ITD--VSPLSKLSRLETLNL----MYCTGITDVSPLSLISNLRTLDLSHC 1379
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 140/480 (29%), Positives = 214/480 (44%), Gaps = 75/480 (15%)
Query: 21 TEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80
+ SL RDC + CLG V+++ + G S L+ L+ ++TD L + C
Sbjct: 217 SHTSLTVGRDCFIP--CLGV---VSEEVL-----AGVSRLT--LNKVELTDRDLWRIHKC 264
Query: 81 SNLQSLDFNFCI-------QISDGG---------LEHLRGLSNLTSLSFRR-NNAITAQG 123
SNL++L C Q+ G E +RG+S L ++ N +G
Sbjct: 265 SNLKALSIEECTGRICLGTQMPHGNSPTRENCDDTERVRGISCLEEITISNCMNIKEIKG 324
Query: 124 MKAFAGL-----IN----------------LVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ A + IN +++L+ + C I L L +ESL I
Sbjct: 325 LNTLACISRLRFINSNISDDCVANISENKHILELEFQDCANI-TSLRPLANSQLIESLVI 383
Query: 163 KWCNCIT-DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
NCI +S++ L+ L L+ L++S + D+ + L + L L+L C +
Sbjct: 384 S--NCINLESEINVLAALNRLRELRLSRLAINDATLRDLDVSKCLRTLDLSHCTGITD-V 440
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLES 280
LS L SL L+L+ C D SK+ SL+ +L ITD + L L+ LE
Sbjct: 441 SPLSELSSLRTLDLSHCTGITD-VSPLSKLSSLRTFDLSHCTGITD--VSPLSTLSGLEV 497
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
LNL C G+ +L L L + LS I+D LR + L L++L+L + T
Sbjct: 498 LNLSGCTGVASGVDSLCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDL-SHCTGITN 556
Query: 341 LAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
++ L++L+GL L+L G A ITD N + +L C G+TD V + LS L
Sbjct: 557 VSPLSTLSGLEVLNLSGCADITDISPLSDLNIMHTLNLSFC-TGITD--VSPLSKLSRLE 613
Query: 400 LLNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGLRHLKPL---KNLRSLTLESC 455
LNL +TD L LIS L +L++S+ G+ + PL NLR+L L C
Sbjct: 614 TLNLMYCTGITDVSPLSLISNLR---TLDLSH----CTGITDVSPLSLISNLRTLDLSHC 666
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL SL IT +
Sbjct: 1360 TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVPP 1410
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ LI L K DL CT I + L L +LE+LN+ +C IT D+ PLS ++ L++L
Sbjct: 1411 LSMLIRLEKSDLSGCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLSKVSRLETLN 1467
Query: 187 -ISCSKVTD 194
+ C+ +TD
Sbjct: 1468 LMYCTGITD 1476
>gi|290977067|ref|XP_002671260.1| predicted protein [Naegleria gruberi]
gi|284084827|gb|EFC38516.1| predicted protein [Naegleria gruberi]
Length = 378
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 164/390 (42%), Gaps = 66/390 (16%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NLQSLDF+ + LS+ N +T G+KA A L L K++ R
Sbjct: 3 NLQSLDFS----------------TTTNELSYNHNYIVT-NGLKAIAELKQLKKINFHRN 45
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GL + +L L+I CN I K +S L LK L I+ + + D G Y+
Sbjct: 46 QIGQNGLQTISQFNQLLCLDIS-CNGIGIEGAKAVSELNQLKELDITANDIGDIGAKYIS 104
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
+++LT L + + + S+ L L LN++ + D+G + S + L L++
Sbjct: 105 QMKELTKLYVRYNDINSQGASSIGELHQLTKLNISYNNIGDEGMKVISGMKHLTKLSVHN 164
Query: 262 NEI---TDECLVHLKGLTNLE---------------------SLNLDSCGIGDEGLVNLT 297
N I + + + +K LTNL L + S IG G + ++
Sbjct: 165 NHINVGSSQFISQMKQLTNLSISENHIGIEGVETISQLSQLTRLKISSNQIGARGAILIS 224
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L L +++ I+D L+ L L L L D QI + G+ ++ L LT LD+ G
Sbjct: 225 KLDKLTKLSIGSNRINDEGLKSLCRLKHLTKLKADFNQIGNEGVKSIIQLKQLTFLDIGG 284
Query: 358 ARITDSGAAYLRNFKNLRSLEIC------------------------GGGLTDAGVKHIK 393
I+ GA ++ K LR+L I L+D GVK I
Sbjct: 285 NNISHKGAQFINQLKQLRTLYISENQIGNKGAKLISELTQLRILHIRKNELSDEGVKSIL 344
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
+ LT L+L +N ++T + +S L L
Sbjct: 345 LMKQLTELDLRENYDITVRMENQLSTLKSL 374
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 1/250 (0%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ L +++ L L +N +R Q+ +G + S+ L L++ N I E + L
Sbjct: 23 IVTNGLKAIAELKQLKKINFHRNQIGQNGLQTISQFNQLLCLDISCNGIGIEGAKAVSEL 82
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L+ L++ + IGD G ++ + L + + + I+ + L L LN+
Sbjct: 83 NQLKELDITANDIGDIGAKYISQMKELTKLYVRYNDINSQGASSIGELHQLTKLNISYNN 142
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I D G+ ++ + LT L + I + ++ K L +L I + GV+ I L
Sbjct: 143 IGDEGMKVISGMKHLTKLSVHNNHINVGSSQFISQMKQLTNLSISENHIGIEGVETISQL 202
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
S LT L +S N + + LIS L L L++ ++RI GL+ L LK+L L +
Sbjct: 203 SQLTRLKISSN-QIGARGAILISKLDKLTKLSIGSNRINDEGLKSLCRLKHLTKLKADFN 261
Query: 456 KVTANDIKRL 465
++ +K +
Sbjct: 262 QIGNEGVKSI 271
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 34/187 (18%)
Query: 299 LTNLESINLSFTG---------ISDGSLRKLAGLSSLKSLNLDARQITDTGL-------- 341
+ NL+S++ S T I L+ +A L LK +N QI GL
Sbjct: 1 MKNLQSLDFSTTTNELSYNHNYIVTNGLKAIAELKQLKKINFHRNQIGQNGLQTISQFNQ 60
Query: 342 ----------------AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
A++ L L LD+ I D GA Y+ K L L + +
Sbjct: 61 LLCLDISCNGIGIEGAKAVSELNQLKELDITANDIGDIGAKYISQMKELTKLYVRYNDIN 120
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
G I +L LT LN+S N N+ D+ +++ISG+ L L+V N+ I + + +K
Sbjct: 121 SQGASSIGELHQLTKLNISYN-NIGDEGMKVISGMKHLTKLSVHNNHINVGSSQFISQMK 179
Query: 446 NLRSLTL 452
L +L++
Sbjct: 180 QLTNLSI 186
>gi|326679785|ref|XP_002660968.2| PREDICTED: hypothetical protein LOC100332407 [Danio rerio]
Length = 537
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 129/453 (28%), Positives = 205/453 (45%), Gaps = 71/453 (15%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS----QGSSLL 60
++++ + + + R L +LE F C LQ L YP ++ + + + + S L
Sbjct: 111 ELAELLLSHMARERLLRPRTLELFFGCPLQKFVLNCYPYTTNELLRQLRAFTCLKHLSFL 170
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L +TD+GL L + S LQ L+ + C +++D L+H+ GL +LT L+ +
Sbjct: 171 NSPL----ITDAGLSVLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLTFLALDQTKV-- 224
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN------CITDSDMK 174
+ AGL L+ L+S + C IT+S ++
Sbjct: 225 -----SDAGL-----------------------LLYLQSGSSALCQLSLNQTAITESTLR 256
Query: 175 PLSG-LTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
L + L+ L I +KV+D S +A LK LQ L+L+G V L L++ SL
Sbjct: 257 VLPASVPQLRMLSIKHTKVSDVSALAELKNLQT---LHLDGTGVQENSLQCLASHPSLSA 313
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNL---GFNEITDECLVHL-KGLTNLESLNLDSCGI 288
L+L ++ DG I L++ L G + +TD L L + LE D +
Sbjct: 314 LSLAGIPVA-DGNHTLEIIAGLRLTQLTLPGRHSVTDSGLSFLSRQTLLLELDLTDYTQL 372
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
D G+ L+ +T L+ ++LS T +SD L+ L L L+ L LD +T G+AAL +T
Sbjct: 373 TDHGITQLSSMTRLKKLSLSNTQVSDSGLQGLIRLKELQELCLDRTAVTSRGVAAL--IT 430
Query: 349 GLTHLDLFGARITDSGAAYLR----NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
L HL + G T G +R + L L + +TD G+K L + LS
Sbjct: 431 HLPHLQVMGLASTQVGDTVIRRGLVHCPQLLKLNLSRTRITDQGLKF------LCRMQLS 484
Query: 405 Q-NCNLTDKTL----ELISGLTGLVSLNVSNSR 432
Q N + T TL LIS L S+ S++R
Sbjct: 485 QVNLDGTGVTLVGIANLISACPHLSSVRASHTR 517
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 154/320 (48%), Gaps = 41/320 (12%)
Query: 166 NCI---TDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 220
NC T+ ++ L T LK L S +TD+G++ L L KL LNL C +T +C
Sbjct: 145 NCYPYTTNELLRQLRAFTCLKHLSFLNSPLITDAGLSVLSNLSKLQHLNLSSCSKLTDSC 204
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE--ITDECLVHLKG-LTN 277
L ++ L SL +L L++ ++SD G + + GS + L N+ IT+ L L +
Sbjct: 205 LQHITGLRSLTFLALDQTKVSDAGLLLYLQSGSSALCQLSLNQTAITESTLRVLPASVPQ 264
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L++ + D + L L NL++++L TG+ + SL+ LA SL +L+L +
Sbjct: 265 LRMLSIKHTKVSD--VSALAELKNLQTLHLDGTGVQENSLQCLASHPSLSALSLAGIPVA 322
Query: 338 DTGLAALTSLTGL--THLDLFGAR-ITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIK 393
D G L + GL T L L G +TDSG ++L R L LTD G+ +
Sbjct: 323 D-GNHTLEIIAGLRLTQLTLPGRHSVTDSGLSFLSRQTLLLELDLTDYTQLTDHGITQL- 380
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
S +T L L++SN++++ +GL+ L LK L+ L L+
Sbjct: 381 ------------------------SSMTRLKKLSLSNTQVSDSGLQGLIRLKELQELCLD 416
Query: 454 SCKVTANDIKRLQSRDLPNL 473
VT+ + L + LP+L
Sbjct: 417 RTAVTSRGVAALITH-LPHL 435
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 163/352 (46%), Gaps = 65/352 (18%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++AF L +L L+ T GL L L KL+ LN+ C+ +TDS ++ ++GL +L
Sbjct: 158 LRAFTCLKHLSFLNSPLIT--DAGLSVLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLT 215
Query: 184 SLQISCSKVTDSG-IAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + +KV+D+G + YL+ G L L+L +T + L L A
Sbjct: 216 FLALDQTKVSDAGLLLYLQSGSSALCQLSLNQTAITESTLRVLPA--------------- 260
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
+ L++L++ +++D + L L NL++L+LD G+ + L L +
Sbjct: 261 --------SVPQLRMLSIKHTKVSD--VSALAELKNLQTLHLDGTGVQENSLQCLASHPS 310
Query: 302 LESINLSFTGISDG--SLRKLAGLSSLKSLNLDAR------------------------- 334
L +++L+ ++DG +L +AGL L L L R
Sbjct: 311 LSALSLAGIPVADGNHTLEIIAGL-RLTQLTLPGRHSVTDSGLSFLSRQTLLLELDLTDY 369
Query: 335 -QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH-I 392
Q+TD G+ L+S+T L L L +++DSG L K L+ L + +T GV I
Sbjct: 370 TQLTDHGITQLSSMTRLKKLSLSNTQVSDSGLQGLIRLKELQELCLDRTAVTSRGVAALI 429
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTG---LVSLNVSNSRITSAGLRHL 441
L L ++ L+ + + D + GL L+ LN+S +RIT GL+ L
Sbjct: 430 THLPHLQVMGLA-STQVGDTVIR--RGLVHCPQLLKLNLSRTRITDQGLKFL 478
>gi|410684076|ref|YP_006060083.1| leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum CMR15]
gi|299068565|emb|CBJ39793.1| leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum CMR15]
Length = 555
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 144/307 (46%), Gaps = 53/307 (17%)
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC--QLSDDGCEKFSKIGSLKVLN 258
+G L L LEG T L +L A SL L+L+RC Q++ G S++ L LN
Sbjct: 130 EGYAALESLTLEG-RFTDEDLATLPA--SLKALDLSRCGRQITAAGIAHLSEL-PLAELN 185
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
+ N I DE L L +LN+ S GIGD G L T LES+++SF I ++
Sbjct: 186 VRNNWIGDEGARLLAAHPTLTTLNVASNGIGDAGAQALAANTRLESLDISFNEIGSDGVQ 245
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
LA ++LK+LN+ + I D G AL T LT L+ RI+D+GA L N +L SL+
Sbjct: 246 ALADNATLKTLNISSNDIGDAGALALAVNTTLTELNTSCNRISDAGAQALANSDSLTSLD 305
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQN-----------------------CNLTDKTLE 415
I G DAGV+ I + L L++S+N C + +
Sbjct: 306 ISDNGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLAVAANTTLTKLCIADCEIGTAGAQ 365
Query: 416 LISGLTGLVSLNVSNSRITSAGL----RH--LKPL---KN---------------LRSLT 451
++ T LVSL+ ++ I + G RH LK L KN LRSL
Sbjct: 366 ALAANTRLVSLDAGHNGIGTEGAQALARHATLKQLNLEKNPIGDAGAVAFADNATLRSLN 425
Query: 452 LESCKVT 458
L+ CKVT
Sbjct: 426 LKGCKVT 432
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 188/415 (45%), Gaps = 45/415 (10%)
Query: 25 LEAFRD----CALQDLCL-GQYPGVNDKWMDVIASQGSSLLSVDLS--GSDVTDSGLIHL 77
L+A RD AL+ L L G++ + +A+ +SL ++DLS G +T +G+ HL
Sbjct: 123 LQALRDTEGYAALESLTLEGRFTDED------LATLPASLKALDLSRCGRQITAAGIAHL 176
Query: 78 KDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
+ L L+ N+ I D G L LT+L+ +N I G +A A L
Sbjct: 177 SELP-LAELNVRNNW---IGDEGARLLAAHPTLTTLNVA-SNGIGDAGAQALAANTRLES 231
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LD+ G+ L L++LNI N I D+ L+ T L L SC++++D+
Sbjct: 232 LDISFNEIGSDGVQALADNATLKTLNIS-SNDIGDAGALALAVNTTLTELNTSCNRISDA 290
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG----------- 244
G L LT L++ A + +++A L L+++R +LS+ G
Sbjct: 291 GAQALANSDSLTSLDISDNGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLAVAANTTLT 350
Query: 245 --CEKFSKIGS-----------LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
C +IG+ L L+ G N I E L L+ LNL+ IGD
Sbjct: 351 KLCIADCEIGTAGAQALAANTRLVSLDAGHNGIGTEGAQALARHATLKQLNLEKNPIGDA 410
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G V L S+NL ++D LR LA ++L++LN+ +IT G A + + LT
Sbjct: 411 GAVAFADNATLRSLNLKGCKVTDSGLRVLATNATLRTLNVSDNRITAEGAKATAANSTLT 470
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LD+ I D GA L L L IC LT GV + ++L +L++ +N
Sbjct: 471 SLDVSHNGIEDEGALALAANTVLNVLNICYNALTVKGVTALAASTTLAVLDIREN 525
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 148/320 (46%), Gaps = 5/320 (1%)
Query: 133 LVKLDLERCTR--IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
L LDL RC R G+ +L L L LN++ N I D + L+ L +L ++ +
Sbjct: 156 LKALDLSRCGRQITAAGIAHLSEL-PLAELNVR-NNWIGDEGARLLAAHPTLTTLNVASN 213
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+ D+G L +L L++ + + + +L+ +L LN++ + D G +
Sbjct: 214 GIGDAGAQALAANTRLESLDISFNEIGSDGVQALADNATLKTLNISSNDIGDAGALALAV 273
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+L LN N I+D L +L SL++ G GD G+ + T L +++S
Sbjct: 274 NTTLTELNTSCNRISDAGAQALANSDSLTSLDISDNGFGDAGVQAIAANTRLRRLDISRN 333
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+S+ + +A ++L L + +I G AL + T L LD I GA L
Sbjct: 334 RLSEAGVLAVAANTTLTKLCIADCEIGTAGAQALAANTRLVSLDAGHNGIGTEGAQALAR 393
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L+ L + + DAG D ++L LNL + C +TD L +++ L +LNVS+
Sbjct: 394 HATLKQLNLEKNPIGDAGAVAFADNATLRSLNL-KGCKVTDSGLRVLATNATLRTLNVSD 452
Query: 431 SRITSAGLRHLKPLKNLRSL 450
+RIT+ G + L SL
Sbjct: 453 NRITAEGAKATAANSTLTSL 472
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 160/356 (44%), Gaps = 33/356 (9%)
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK- 191
VKL + + L + +G LESL ++ TD D+ L +LK+L +S C +
Sbjct: 113 VKLTVRSSDELQA-LRDTEGYAALESLTLE--GRFTDEDLATLPA--SLKALDLSRCGRQ 167
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+T +GIA+L L L LN+ + L+A +L LN+ + D G + +
Sbjct: 168 ITAAGIAHLSEL-PLAELNVRNNWIGDEGARLLAAHPTLTTLNVASNGIGDAGAQALAAN 226
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
L+ L++ FNEI + + L L++LN+ S IGD G + L T L +N S
Sbjct: 227 TRLESLDISFNEIGSDGVQALADNATLKTLNISSNDIGDAGALALAVNTTLTELNTSCNR 286
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG------- 364
ISD + LA SL SL++ D G+ A+ + T L LD+ R++++G
Sbjct: 287 ISDAGAQALANSDSLTSLDISDNGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLAVAAN 346
Query: 365 -----------------AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
A L L SL+ G+ G + + ++L LNL +N
Sbjct: 347 TTLTKLCIADCEIGTAGAQALAANTRLVSLDAGHNGIGTEGAQALARHATLKQLNLEKNP 406
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+ D + L SLN+ ++T +GLR L LR+L + ++TA K
Sbjct: 407 -IGDAGAVAFADNATLRSLNLKGCKVTDSGLRVLATNATLRTLNVSDNRITAEGAK 461
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 131/297 (44%), Gaps = 26/297 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++++S +D+ D+G + L + L L+ + C +ISD G + L +LTSL +
Sbjct: 251 ATLKTLNISSNDIGDAGALALAVNTTLTELNTS-CNRISDAGAQALANSDSLTSLDIS-D 308
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC----------- 165
N G++A A L +LD+ R G++ + L L I C
Sbjct: 309 NGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLAVAANTTLTKLCIADCEIGTAGAQALA 368
Query: 166 ------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
N I + L+ LK L + + + D+G L LNL+G
Sbjct: 369 ANTRLVSLDAGHNGIGTEGAQALARHATLKQLNLEKNPIGDAGAVAFADNATLRSLNLKG 428
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
C VT + L L+ +L LN++ +++ +G + + +L L++ N I DE + L
Sbjct: 429 CKVTDSGLRVLATNATLRTLNVSDNRITAEGAKATAANSTLTSLDVSHNGIEDEGALALA 488
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL-AGLSSLKSL 329
T L LN+ + +G+ L T L +++ G S R L A + LK+L
Sbjct: 489 ANTVLNVLNICYNALTVKGVTALAASTTLAVLDIRENGYSATIERALQAAVPQLKAL 545
>gi|443723521|gb|ELU11898.1| hypothetical protein CAPTEDRAFT_102929 [Capitella teleta]
Length = 439
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 164/319 (51%), Gaps = 31/319 (9%)
Query: 151 LKGLMKLESLNIKWCNCITDSDM-KPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQK-L 206
++G+ L SLN+ C +TD M LS L +L SL +S C +TDS IA + G QK L
Sbjct: 131 VEGVPGLRSLNLSGCYNVTDVIMTHALSHDLPSLVSLNLSLCKVITDSTIACIAGHQKQL 190
Query: 207 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
L L GC T A L L +L LNL C K+ + G +
Sbjct: 191 QELELGGCAQITTNALLLLACGLSNLRRLNLRSC---------------CKITDEGVAYL 235
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLA 321
T + G LE + L C I D L L+ G + L+S+NLSF TG++D L L+
Sbjct: 236 TGQSHTVPTGTAMLEHIVLQDCQKITDVSLKYLSLGFSQLKSVNLSFCTGVTDSGLECLS 295
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRN-FKNLRSL 377
+ SL+ L+L A I+D G+ L LT L+ L L F RITD+ ++ + +L +L
Sbjct: 296 RMPSLQELDLRACDGISDHGVGYLAEGLTRLSVLHLSFCDRITDTALLHISHGLIHLTAL 355
Query: 378 EICGGGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRIT 434
+C ++D G++H I + LN+ Q LTD +LELI+ T L ++++ +RIT
Sbjct: 356 SLCDCSISDEGIQHLIGSSQDIVKLNIGQCDRLTDASLELIAQNFTQLHTIDIYGCTRIT 415
Query: 435 SAGLRHLKPLKNLRSLTLE 453
G++HL+ ++ ++ +E
Sbjct: 416 KLGVKHLRDQPHISAINME 434
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 145/283 (51%), Gaps = 31/283 (10%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDC--SNLQSLDFNFCIQISDGGLE 100
+ D + IA L ++L G + +T + L+ L C SNL+ L+ C +I+D G+
Sbjct: 175 ITDSTIACIAGHQKQLQELELGGCAQITTNALL-LLACGLSNLRRLNLRSCCKITDEGVA 233
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+L G S+ T M L ++V D ++ T + ++L G +L+S+
Sbjct: 234 YLTGQSHTVP---------TGTAM-----LEHIVLQDCQKITDVSLKYLSL-GFSQLKSV 278
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VT 217
N+ +C +TDS ++ LS + +L+ L + +C ++D G+ YL +GL +L++L+L C +T
Sbjct: 279 NLSFCTGVTDSGLECLSRMPSLQELDLRACDGISDHGVGYLAEGLTRLSVLHLSFCDRIT 338
Query: 218 AACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLG-FNEITDECLVHL 272
L +S L L L+L C +SD+G + IGS + LN+G + +TD L +
Sbjct: 339 DTALLHISHGLIHLTALSLCDCSISDEGIQHL--IGSSQDIVKLNIGQCDRLTDASLELI 396
Query: 273 -KGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGIS 313
+ T L ++++ C I G+ +L ++ +IN+ S
Sbjct: 397 AQNFTQLHTIDIYGCTRITKLGVKHLRDQPHISAINMELFAAS 439
>gi|62632752|ref|NP_001015043.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
gi|190338219|gb|AAI63001.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
gi|190338703|gb|AAI63002.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
Length = 400
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 181/385 (47%), Gaps = 75/385 (19%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 181
Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
V+ + L+ + SL YL L CQ ++TD
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQ-----------------------KLTDL 218
Query: 268 CLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L H+ KGLT L+ LNL CG GISD + L+ ++SL
Sbjct: 219 SLKHISKGLTKLKVLNLSFCG-----------------------GISDAGMIHLSHMTSL 255
Query: 327 KSLNLDA-RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGG 382
SLNL + I+DTG+ L T L+ LD+ F +I D AY+ + L+SL +C
Sbjct: 256 WSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSC 315
Query: 383 GLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLR 439
++D G+ + ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL
Sbjct: 316 HISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLE 375
Query: 440 HLKPLKNLRSLTLESCKVTANDIKR 464
+ L L+ L L ++T ++ R
Sbjct: 376 RITQLPCLKVLNLGLWQMTESEKVR 400
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 144/285 (50%), Gaps = 33/285 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L L L+ C ++ L ++ KGL KL+
Sbjct: 190 LAGMTR-----------------SAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKI 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 350
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISD 314
+ LT L ++L C I GL +T L L+ +NL +++
Sbjct: 351 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 395
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 129/253 (50%), Gaps = 42/253 (16%)
Query: 233 LNLNRCQ-LSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG 287
LNL+ C L+D+G +I SL+VLNL +ITD L + + L NLE L L C
Sbjct: 95 LNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCS 154
Query: 288 -IGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLAGLS--------SLKSLNL-DARQ 335
I + GL+ + GL L+S+NL S +SD + LAG++ SL+ L L D ++
Sbjct: 155 NITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQK 214
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+TD L ++ GLT L + +L CGG ++DAG+ H+ +
Sbjct: 215 LTDLSLKHISK--GLTKLKVL-------------------NLSFCGG-ISDAGMIHLSHM 252
Query: 396 SSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTL 452
+SL LNL N++D + L G L L+VS +I L ++ + L L+SL+L
Sbjct: 253 TSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSL 312
Query: 453 ESCKVTANDIKRL 465
SC ++ + I R+
Sbjct: 313 CSCHISDDGINRM 325
>gi|290976637|ref|XP_002671046.1| predicted protein [Naegleria gruberi]
gi|284084611|gb|EFC38302.1| predicted protein [Naegleria gruberi]
Length = 350
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 145/306 (47%), Gaps = 12/306 (3%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I+ + + L NL L I + + + YL L+KLT+LN+ C +T ++S+
Sbjct: 12 NVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKCKITNLGIESMI 71
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTNLESLN 282
+ L L ++ + D G + ++ L L++ NEI E C+ +K LT+L S+
Sbjct: 72 GMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQMKNLTDL-SVG 130
Query: 283 LDSCGIGDEGLV---NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L+ GI +EG+ L LTNL + + + DG ++ + L L SLN+ I D
Sbjct: 131 LN--GIDEEGIKFICELKQLTNLSAHAIQIVSV-DG-VQSITSLKQLISLNIGDNWIGDA 186
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
G ++ + L L + I G + NL L+I L D G K I L+ L
Sbjct: 187 GAKVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLI 246
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
L +S+ ++ ++ E IS L L L+V + I + G + L LK+L L + +
Sbjct: 247 KLWISE-ISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIED 305
Query: 460 NDIKRL 465
+ +K L
Sbjct: 306 SGVKYL 311
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 149/315 (47%), Gaps = 26/315 (8%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I+++ ++ LINL +L + + + L L KL LNI C IT+ ++ +
Sbjct: 12 NVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKCK-ITNLGIESM 70
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-------EGCP-------------- 215
G+ L SL+IS + + DSG+ L L +LT L++ EGC
Sbjct: 71 IGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQMKNLTDLSVG 130
Query: 216 ---VTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+ + + L L L+ + Q+ S DG + + + L LN+G N I D
Sbjct: 131 LNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAGAKV 190
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+ + L++L + S IG +G +++ +TNL +++S + D + ++GL+ L L +
Sbjct: 191 ISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLIKLWI 250
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
I + G +++ L LT LD+ I GA L K+L L+I + D+GVK+
Sbjct: 251 SEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIEDSGVKY 310
Query: 392 IKDLSSLTLLNLSQN 406
+ + L LN+ N
Sbjct: 311 LSKMKKLKHLNVYDN 325
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 148/327 (45%), Gaps = 29/327 (8%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+D+ + +L L L+ + C +I++ G+E + G+ LTSL N I G+K+
Sbjct: 36 NDIGYKAVEYLSKLEKLTILNISKC-KITNLGIESMIGMKQLTSLEISEN-GIDDSGVKS 93
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L KLD++ + + C CI S + NL L
Sbjct: 94 LIELSQLTKLDIDH-----------------NEIRTEGCKCI--------SQMKNLTDLS 128
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSDDGC 245
+ + + + GI ++ L++LT L+ + + + S+++L L LN+ + D G
Sbjct: 129 VGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAGA 188
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
+ S++ LK L + I + + +TNL L++ + +GDEG ++GL L +
Sbjct: 189 KVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLIKL 248
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
+S I + ++ L L L++ I G +L+ L LT LD+ I DSG
Sbjct: 249 WISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIEDSGV 308
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHI 392
YL K L+ L + G+ D G K++
Sbjct: 309 KYLSKMKKLKHLNVYDNGI-DNGNKYL 334
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
LK L+L N I+ E + L NL L++ IG + + L+ L L +N+S I+
Sbjct: 4 LKKLDLISNVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKCKIT 63
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
+ + + G+ L SL + I D+G+ +L L+ LT LD+ I G + KN
Sbjct: 64 NLGIESMIGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQMKN 123
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L L + G+ + G+K I +L LT L+ ++ ++ I+ L L+SLN+ ++ I
Sbjct: 124 LTDLSVGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWI 183
Query: 434 TSAGLRHLKPLKNLRSLTLESC 455
AG + + +K L++L + S
Sbjct: 184 GDAGAKVISEMKQLKTLYMHST 205
>gi|290994540|ref|XP_002679890.1| predicted protein [Naegleria gruberi]
gi|284093508|gb|EFC47146.1| predicted protein [Naegleria gruberi]
Length = 293
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 139/280 (49%), Gaps = 1/280 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I +++ G ++ +++LT L++ + +S + L LN+ +
Sbjct: 1 MKQLTSLSIGVNEIGVEGGKFISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNIFKN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ +G + S++ L L++ N I DE + + + L SL++ IG EG ++G
Sbjct: 61 GIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLISG 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+N+S ISD + ++ + L SL + I D G L+ + LT LD+
Sbjct: 121 MKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDISSN 180
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+ GA ++ K L SL+I + D G + I + LT LN+S N L D+ +LIS
Sbjct: 181 PMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIIL-DEGAKLIS 239
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ L SL++ + I G + + +K L SL + + +++
Sbjct: 240 EMKQLTSLDICYNEIGDEGAKFISGMKQLTSLYVYANRIS 279
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 137/282 (48%), Gaps = 2/282 (0%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LTSLS N I +G K + + L LD+ G + + +L SLNI +
Sbjct: 1 MKQLTSLSIGVNE-IGVEGGKFISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNI-F 58
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I K +S + L SL IS + + D G+ + +++LT L++ + +
Sbjct: 59 KNGIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLI 118
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L LN+++ ++SD+G + S++ L L + + I D+ +L + L SL++
Sbjct: 119 SGMKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDIS 178
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
S +G EG ++ + L S+++S I D ++G+ L SLN+ I D G +
Sbjct: 179 SNPMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIILDEGAKLI 238
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ + LT LD+ I D GA ++ K L SL + ++D
Sbjct: 239 SEMKQLTSLDICYNEIGDEGAKFISGMKQLTSLYVYANRISD 280
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 114/233 (48%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I + + G + +++LT L++ G + + S+S + L L
Sbjct: 44 KLISEMKQLTSLNIFKNGIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSL 103
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++++ ++ +G + S + L LN+ NEI+DE + + L SL + GI D+G
Sbjct: 104 DISKNEIGVEGAKLISGMKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGA 163
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
L+ + L S+++S + + ++ + L SL++ I D G ++ + LT L
Sbjct: 164 KYLSEIKQLTSLDISSNPMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSL 223
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
++ I D GA + K L SL+IC + D G K I + LT L + N
Sbjct: 224 NISNNIILDEGAKLISEMKQLTSLDICYNEIGDEGAKFISGMKQLTSLYVYAN 276
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 106/216 (49%), Gaps = 3/216 (1%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ + L SLD + + I D G++ + + LTSL +N I +G K +G+ L L
Sbjct: 70 ISEMKQLTSLDISGNL-IYDEGVKSISEMKQLTSLDISKNE-IGVEGAKLISGMKQLTSL 127
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ + G + + +L SL I + + I D K LS + L SL IS + + G
Sbjct: 128 NISKNEISDEGAKLISEMKQLTSLTI-YKSGIDDKGAKYLSEIKQLTSLDISSNPMGVEG 186
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
++ +++LT L++ + + +S + L LN++ + D+G + S++ L
Sbjct: 187 AKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIILDEGAKLISEMKQLTS 246
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L++ +NEI DE + G+ L SL + + I DE
Sbjct: 247 LDICYNEIGDEGAKFISGMKQLTSLYVYANRISDEA 282
>gi|195430566|ref|XP_002063325.1| GK21848 [Drosophila willistoni]
gi|194159410|gb|EDW74311.1| GK21848 [Drosophila willistoni]
Length = 543
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 123/374 (32%), Positives = 190/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 207 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 248
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 249 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 305
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 306 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 365
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 366 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 418
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + YL E S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 419 G-MAYLT-----------EGGSGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 463
Query: 286 CGIGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGL 341
C I D+G++ + L LE++N+ + I+D L+ LA L++LK+++L Q+T G+
Sbjct: 464 CQITDQGMLKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLTSKGI 523
Query: 342 AALTSLTGLTHLDL 355
+ L L L+L
Sbjct: 524 DIIMKLPKLQKLNL 537
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 173/329 (52%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L H V+L L
Sbjct: 217 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLP---NL 268
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 269 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 328
Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 329 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 388
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRK 319
+TD L HL + LE LNL SC I D G+ LT G + + S+++SF ISD +L
Sbjct: 389 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTH 448
Query: 320 LA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLR 375
+A GL L+SL+L+ QITD G+ + SL L +L++ +RITD G L + NL+
Sbjct: 449 IAQGLYRLRSLSLNQCQITDQGMLKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLK 508
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
++++ G LT G+ I L L LNL
Sbjct: 509 TIDLYGCTQLTSKGIDIIMKLPKLQKLNL 537
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 161/317 (50%), Gaps = 33/317 (10%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 237 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 296
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 297 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG------IGHLA----GFSRET 346
Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAG 322
E G LE L L C + DE L ++ GLT+L+SINLSF ++D L+ LA
Sbjct: 347 AE------GNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLAR 400
Query: 323 LSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLE 378
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 401 MPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLS 460
Query: 379 ICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITS 435
+ +TD G+ I K L L LN+ Q +TDK L+ L LT L ++++ +++TS
Sbjct: 461 LNQCQITDQGMLKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLTS 520
Query: 436 AGLRHLKPLKNLRSLTL 452
G+ + L L+ L L
Sbjct: 521 KGIDIIMKLPKLQKLNL 537
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 128/272 (47%), Gaps = 56/272 (20%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
G+ LT LNL GC A ++ LG F ++L +LK L+L
Sbjct: 237 GVPALTSLNLSGC-FNVADMN----LGHAFSVDLP----------------NLKTLDLSL 275
Query: 262 -NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINL-SFTGISDGS 316
+ITD L + + L NLE+L L C I + GL+ + GL L+ +NL S ISD
Sbjct: 276 CKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG 335
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYL-RNF 371
+ LAG S R+ + L L+ G R++D ++ +
Sbjct: 336 IGHLAGFS---------RETAEGNL----------QLEYLGLQDCQRLSDEALGHIAQGL 376
Query: 372 KNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNV 428
+L+S L C +TD+G+KH+ + L LNL N++D + L G +G+ SL+V
Sbjct: 377 TSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 435
Query: 429 SN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
S +I+ L H+ + L LRSL+L C++T
Sbjct: 436 SFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 467
>gi|343420998|emb|CCD18943.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1355
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 211/436 (48%), Gaps = 85/436 (19%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL +L IT +
Sbjct: 62 TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLISNLRTLDLSHCTGIT--DVPP 112
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------- 170
+ LI L KLDL CT I + L L +LE+LN+ +C ITD
Sbjct: 113 LSMLIRLEKLDLSGCTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLM 171
Query: 171 -----SDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+D+ PLS ++NL SL +S C+ +TD + L L +L L+L GC + L
Sbjct: 172 YCTGITDVSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGC-TGITDVSPL 228
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
S L L LNL C D SK+ L+ LNL + ITD + L L+ LE+LNL
Sbjct: 229 SKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNL 285
Query: 284 DSC-GIGDEGLVNL------------TGLTN---------LESINLS-FTGISDGSLRKL 320
C GI D ++L TG+T+ LE ++LS TGI+D S L
Sbjct: 286 MYCTGITDVSPLSLMSNLCSLYLSHCTGITDVSPLSMLIRLEKLDLSGCTGITDVS--PL 343
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYLRNFKNLRS 376
+ LS L++LNL + TG+ ++ L+ L+ L+ ++ ITD + L NL S
Sbjct: 344 SKLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCS 397
Query: 377 LEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL-NVSNSRIT 434
L + G+TD V + D +L L+LS +TD +S L+ L+ L N+S S I
Sbjct: 398 LNLMYCTGITD--VSPLSDFINLRTLDLSFYTGITD-----VSPLSMLIRLENLSLSNI- 449
Query: 435 SAGLRHLKPLKNLRSL 450
AG+ + PL L SL
Sbjct: 450 -AGITDVSPLSKLSSL 464
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 146/433 (33%), Positives = 217/433 (50%), Gaps = 65/433 (15%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
S+L ++DLS + +TD + L SNL SL + C I+D + L LS L +L+
Sbjct: 945 SNLRTLDLSHCTGITDVSPLSLM--SNLCSLYLSHCTGITD--VPPLSKLSRLETLNLMY 1000
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
IT + + L L L+L CT I + L L +LE+LN+ +C IT D+ P
Sbjct: 1001 CTGIT--DVSPLSKLSRLETLNLMYCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSP 1055
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
LS ++NL SL +S C+ +TD + L L +L L+L GC + LS L L LN
Sbjct: 1056 LSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGC-TGITDVSPLSKLSRLETLN 1112
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
L C D SK+ L+ LNL + ITD + L ++NL SL L C GI D
Sbjct: 1113 LMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD-- 1167
Query: 293 LVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
+ L+ L LE ++LS TGI+D S L+ LS L++LNL + TG+ ++ L+ L+
Sbjct: 1168 VPPLSMLIRLEKLDLSGCTGITDVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLS 1221
Query: 352 HLD----LFGARITDSGAAYLRNFKNLRSLEIC-GGGLTD------------------AG 388
L+ ++ ITD + L +F NLR+L++ G+TD AG
Sbjct: 1222 RLETLNLMYCTGITD--VSPLSDFINLRTLDLSFYTGITDVSPLSMLIRFENLSLSNIAG 1279
Query: 389 VKHIKDLSSLTLLN---LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL- 444
+ + LS+L LN LS +TD + +S L+ L +LN+ + G+ + PL
Sbjct: 1280 ITDVSPLSTLIRLNVLYLSGCTGITD--VSPLSKLSRLETLNL----MYCTGITDVSPLS 1333
Query: 445 --KNLRSLTLESC 455
NLR+L L C
Sbjct: 1334 LISNLRTLDLSHC 1346
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 138/392 (35%), Positives = 200/392 (51%), Gaps = 43/392 (10%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL SL IT +
Sbjct: 683 TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVSP 733
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ + NL L L CT I + L L +LE+LN+ +C IT D+ PLS ++NL++L
Sbjct: 734 LSLMSNLCSLYLSHCTGI-TDVPPLSKLSRLETLNLMYCTGIT--DVSPLSLISNLRTLD 790
Query: 187 IS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+S C+ +TD S ++ + L L L + G +T LS L L LNL C D
Sbjct: 791 LSHCTGITDVSPLSLMSNLCSLYLSHCTG--ITDV--PPLSKLSRLETLNLMYCTGITD- 845
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNL 302
SK+ L+ LNL + ITD + L L+ LE+LNL C GI D ++L ++NL
Sbjct: 846 VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGITDVSPLSL--MSNL 901
Query: 303 ESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR- 359
S+ LS TGI+D S L+ LS L++LNL ITD ++ L+ ++ L LDL
Sbjct: 902 CSLYLSHCTGITDVS--PLSKLSRLETLNLMYCTGITD--VSPLSLISNLRTLDLSHCTG 957
Query: 360 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
ITD + L NL SL + G+TD V + LS L LNL +TD + +S
Sbjct: 958 ITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSKLSRLETLNLMYCTGITD--VSPLS 1011
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
L+ L +LN+ + G+ + PL L L
Sbjct: 1012 KLSRLETLNL----MYCTGITDVSPLSKLSRL 1039
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 132/383 (34%), Positives = 197/383 (51%), Gaps = 40/383 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L D NL++LD +F I+D + L L L +LS IT + + L +L L
Sbjct: 412 LSDFINLRTLDLSFYTGITD--VSPLSMLIRLENLSLSNIAGIT--DVSPLSKLSSLRTL 467
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
DL CT I + +L L +LE+LN+ +C IT D+ PLS ++NL SL +S C+ +TD
Sbjct: 468 DLSHCTGI-TDVSSLSKLSRLETLNLMYCTGIT--DVSPLSLMSNLCSLYLSHCTGITD- 523
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
+ L L +L L+L GC + LS L L LNL C D SK+ L+
Sbjct: 524 -VPPLSMLIRLEKLDLSGC-TGITDVSPLSKLSRLETLNLMYCTGITD-VSPLSKLSRLE 580
Query: 256 VLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS-FTGI 312
LNL + ITD + L ++NL SL L C GI D + L+ L LE ++LS TGI
Sbjct: 581 TLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGCTGI 636
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYL 368
+D S L+ LS L++LNL + TG+ ++ L+ L+ L+ ++ ITD + L
Sbjct: 637 TDVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPL 688
Query: 369 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
NLR+L++ G+TD V + +S+L L LS +TD + +S ++ L SL
Sbjct: 689 SLISNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VSPLSLMSNLCSLY 744
Query: 428 VSNSRITSAGLRHLKPLKNLRSL 450
+S+ G+ + PL L L
Sbjct: 745 LSH----CTGITDVPPLSKLSRL 763
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 141/451 (31%), Positives = 204/451 (45%), Gaps = 102/451 (22%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +SNL SL IT + + LI L KLDL
Sbjct: 278 SRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVSPLSMLIRLEKLDLSG 333
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------------SDMKPLSGL 179
CT I + L L +LE+LN+ +C ITD +D+ PLS +
Sbjct: 334 CTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMYCTGITDVSPLSLM 392
Query: 180 TNLKSLQ-ISCSKVTD------------------------SGIAYLKGLQKLTLLNLEGC 214
+NL SL + C+ +TD S ++ L L+ L+L N+ G
Sbjct: 393 SNLCSLNLMYCTGITDVSPLSDFINLRTLDLSFYTGITDVSPLSMLIRLENLSLSNIAG- 451
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDEC----- 268
+T LS L SL L+L+ C D SK+ L+ LNL + ITD
Sbjct: 452 -ITDV--SPLSKLSSLRTLDLSHCTGITD-VSSLSKLSRLETLNLMYCTGITDVSPLSLM 507
Query: 269 -------LVHLKGLTN---------LESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-T 310
L H G+T+ LE L+L C GI D L+ L+ LE++NL + T
Sbjct: 508 SNLCSLYLSHCTGITDVPPLSMLIRLEKLDLSGCTGITDVS--PLSKLSRLETLNLMYCT 565
Query: 311 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL 368
GI+D S L+ LS L++LNL ITD ++ L+ ++ L L L ITD L
Sbjct: 566 GITDVS--PLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPL 619
Query: 369 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L L++ G G+TD V + LS L LNL +TD + +S L+ L +LN
Sbjct: 620 SMLIRLEKLDLSGCTGITD--VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLN 675
Query: 428 VSNSRITSAGLRHLKPL---KNLRSLTLESC 455
+ + G+ + PL NLR+L L C
Sbjct: 676 L----MYCTGITDVSPLSLISNLRTLDLSHC 702
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 170/335 (50%), Gaps = 37/335 (11%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCS 190
NL L L CT I + L L +LE+LN+ +C IT D+ PLS L+ L++L + C+
Sbjct: 3 NLCSLYLSHCTGI-TDVPPLSKLSRLETLNLMYCTGIT--DVSPLSKLSRLETLNLMYCT 59
Query: 191 KVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+TD S ++ + L+ L L + G +T LS + +L L+L+ C D S
Sbjct: 60 GITDVSPLSLISNLRTLDLSHCTG--ITDV--SPLSLISNLRTLDLSHCTGITD-VPPLS 114
Query: 250 KIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINL 307
+ L+ L+L G ITD + L L+ LE+LNL C GI D L+ L+ LE++NL
Sbjct: 115 MLIRLEKLDLSGCTGITD--VSPLSKLSRLETLNLMYCTGITDVS--PLSKLSRLETLNL 170
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSG 364
+ TGI+D S L+ +S+L SL L ITD + L+ L L LDL G ITD
Sbjct: 171 MYCTGITDVS--PLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGCTGITD-- 224
Query: 365 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
+ L L +L + G+TD V + LS L LNL +TD + +S L+ L
Sbjct: 225 VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRL 280
Query: 424 VSLNVSNSRITSAGLRHLKPL---KNLRSLTLESC 455
+LN+ + G+ + PL NL SL L C
Sbjct: 281 ETLNL----MYCTGITDVSPLSLMSNLCSLYLSHC 311
>gi|348514973|ref|XP_003445014.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oreochromis niloticus]
gi|410918767|ref|XP_003972856.1| PREDICTED: F-box/LRR-repeat protein 14-like [Takifugu rubripes]
Length = 400
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 181/378 (47%), Gaps = 61/378 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCR- 180
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+SD G IG L + E G
Sbjct: 181 ----------------------HVSDVG------IGHLAGMTRSAAE----------GCL 202
Query: 277 NLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA 333
NLE L L C + D L +++ GLT L +NLSF G ISD + L+ ++SL SLNL +
Sbjct: 203 NLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGISDAGMIHLSHMTSLWSLNLRS 262
Query: 334 -RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 389
I+DTG L T L+ LD+ F +I D AY+ + L+SL +C ++D G+
Sbjct: 263 CDNISDTGTMHLAMGTLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGI 322
Query: 390 -KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKN 446
+ ++ + L LN+ Q +TDK LELI+ LT LV +++ ++IT GL + L
Sbjct: 323 NRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPC 382
Query: 447 LRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 383 LKVLNLGLWQMTESEKVR 400
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 142/285 (49%), Gaps = 33/285 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G +NL L L+ C ++ L ++ KGL KL
Sbjct: 190 LAGMTR-----------------SAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+G +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFCDKI 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
+L+ + Y L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 293 GD--QTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 350
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISD 314
+ LT L ++L C I GL +T L L+ +NL +++
Sbjct: 351 IADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 395
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 130/253 (51%), Gaps = 42/253 (16%)
Query: 233 LNLNRC-QLSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG 287
LNL+ C L+D+G +I SL+VLNL +ITD L + + L NLE L L C
Sbjct: 95 LNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCS 154
Query: 288 -IGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLAGLS--------SLKSLNL-DARQ 335
I + GL+ + GL L+S+NL S +SD + LAG++ +L+ L L D ++
Sbjct: 155 NITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQK 214
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+TD L ++ GLT L + +L CGG ++DAG+ H+ +
Sbjct: 215 LTDLSLKHISK--GLTKLRVL-------------------NLSFCGG-ISDAGMIHLSHM 252
Query: 396 SSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTL 452
+SL LNL N++D T+ L G L L+VS +I L ++ + L L+SL+L
Sbjct: 253 TSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSL 312
Query: 453 ESCKVTANDIKRL 465
SC ++ + I R+
Sbjct: 313 CSCHISDDGINRM 325
>gi|198456933|ref|XP_001360491.2| GA22149 [Drosophila pseudoobscura pseudoobscura]
gi|198135799|gb|EAL25066.2| GA22149 [Drosophila pseudoobscura pseudoobscura]
Length = 529
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 122/374 (32%), Positives = 191/374 (51%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 193 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 234
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 235 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLENLELGGCCNI 291
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 292 TNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLS 351
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 352 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 404
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 405 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 449
Query: 286 CGIGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGL 341
C I D+G+V + L LE++N+ + I+D L+ LA L++LK+++L Q++ G+
Sbjct: 450 CQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 509
Query: 342 AALTSLTGLTHLDL 355
+ L L L+L
Sbjct: 510 DIIMKLPKLQKLNL 523
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 161/317 (50%), Gaps = 33/317 (10%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLEN 282
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 283 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 332
Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAG 322
E G LE L L C + DE L ++ GLT+L+SINLSF ++D L+ LA
Sbjct: 333 AE------GNLQLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLAR 386
Query: 323 LSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLE 378
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 387 MPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLS 446
Query: 379 ICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITS 435
+ +TD G VK K L L LN+ Q +TDK L+ L LT L ++++ ++++S
Sbjct: 447 LNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSS 506
Query: 436 AGLRHLKPLKNLRSLTL 452
G+ + L L+ L L
Sbjct: 507 KGIDIIMKLPKLQKLNL 523
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 16/209 (7%)
Query: 69 VTDSGLIHLKDCS--------NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
++D G+ HL S L+ L C ++SD L H+ +GL++L S++ ++
Sbjct: 317 ISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSV 376
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
T G+K A + L +L+L C I G+ L +G + SL++ +C+ I+D + ++
Sbjct: 377 TDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIA 436
Query: 178 -GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYL 233
GL L+SL ++ ++TD G+ + K LQ+L LN+ C +T L +L+ L +L +
Sbjct: 437 QGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTI 496
Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGF 261
+L C QLS G + K+ L+ LNLG
Sbjct: 497 DLYGCTQLSSKGIDIIMKLPKLQKLNLGL 525
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 128/269 (47%), Gaps = 50/269 (18%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
G+ LT LNL GC A ++ LG F ++L +LK L+L
Sbjct: 223 GVPALTSLNLSGC-FNVADMN----LGHAFSVDL----------------PNLKTLDLSL 261
Query: 262 -NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINL-SFTGISDGS 316
+ITD L + + L NLE+L L C I + GL+ + GL L +NL S ISD
Sbjct: 262 CKQITDTSLGRIAQHLRNLENLELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG 321
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL-RNFKNL 374
+ LAG S R+ + L L HL L R++D ++ + +L
Sbjct: 322 IGHLAGFS---------RETAEGNLQ-------LEHLGLQDCQRLSDEALGHIAQGLTSL 365
Query: 375 RS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN- 430
+S L C +TD+G+KH+ + L LNL N++D + L G +G+ SL+VS
Sbjct: 366 KSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFC 424
Query: 431 SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
+I+ L H+ + L LRSL+L C++T
Sbjct: 425 DKISDQALTHIAQGLYRLRSLSLNQCQIT 453
>gi|290981600|ref|XP_002673518.1| predicted protein [Naegleria gruberi]
gi|284087102|gb|EFC40774.1| predicted protein [Naegleria gruberi]
Length = 399
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 148/326 (45%), Gaps = 25/326 (7%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C + + ++ L NLK L I S + D YL + L LN C + L
Sbjct: 34 CRSVGVAILENFPYLENLKELIIDGSYIGDENAIYLSKFKCLKRLNACSCNLGPKSLQYF 93
Query: 225 SALGSLFYLNL--NRCQ---------------------LSDDGCEKFSKIGSLKVLNLGF 261
S L SL L L N+ LS D E+ S+I +L LNL
Sbjct: 94 SNLNSLEELTLPYNKVSGGLYHLKKLKGLKKLDLSKNVLSMDDIEQLSEISNLNHLNLNG 153
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
++ +C+ ++ L L +L L++ I + GL N++ +T L + L SLR L
Sbjct: 154 VDLGGKCMEYISKLP-LITLELEASNIDEIGLGNISQITTLSKLKLFGNNFGSESLRHLV 212
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
LS+LK L+L +I D G+ L+ L L +L L I + G ++ +NL LE+
Sbjct: 213 KLSNLKYLSLAYNKIDDEGVEYLSLLQSLEYLSLSYNNIGNDGVQFISKLENLSQLELIR 272
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
+ + GV+ I + +LT LNL +N L L S + L L++ ++I + HL
Sbjct: 273 NRIDERGVQFISKMKNLTKLNLGENPIRNIGALYL-SKMKQLKGLDLDGTKIDDFSIEHL 331
Query: 442 KPLKNLRSLTLESCKVTANDIKRLQS 467
+KNL+ L +E ++ ++ L+
Sbjct: 332 CLMKNLQYLNIERTNLSETKVETLKE 357
>gi|254416421|ref|ZP_05030174.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176859|gb|EDX71870.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 477
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 136/408 (33%), Positives = 210/408 (51%), Gaps = 52/408 (12%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGL 130
G +KD S L L + + + + + LS LTSL+ + NN IT +
Sbjct: 84 GYNQIKDVSPLSGLTNLTVLNLWNNQITDISSLSGLTSLTELYLNNNQITDISPLSGLTN 143
Query: 131 INLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITD--------------SDMK 174
+ ++ L+ + T I GL +L GL+ L IK + ++ +D+
Sbjct: 144 LTVLNLNNNQITDISPLSGLTSLTGLI-LGGNQIKDVSPLSGLTNLTVLNLNNNQITDIS 202
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
PLSGLT+L L + +++TD I+ L GL LT+L L +T + LS L +L L
Sbjct: 203 PLSGLTSLTVLILYSNQITD--ISSLSGLTSLTVLILSDNQITD--ISPLSGLTNLDALY 258
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
LN Q++D S + +L L L N+ITD + L GLTNL++L L++ I D +
Sbjct: 259 LNNNQITD--ISPLSGLTNLDALYLNNNQITD--ISPLSGLTNLDALYLNNNQITD--IS 312
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+GLTNL+++ L+ I+D SL L+GL++L +L L++ QITD ++ L LT L +L
Sbjct: 313 PLSGLTNLDALYLNSNQITDISL--LSGLTNLDALYLNSNQITD--ISPLLELTNLNYLI 368
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-----LLNLSQNCNL 409
L +ITD + L NL L + +TD I LS LT +LN +Q +
Sbjct: 369 LDNNQITD--ISPLSGLTNLTILILDNNQITD-----ISPLSGLTNLGGLILNSNQ---I 418
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
TD + +SGLT L LN+++++IT + L L NLR L L+ +
Sbjct: 419 TD--VSPLSGLTNLTVLNLNSNQITD--VSPLSGLTNLRRLHLKDNPI 462
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 120/355 (33%), Positives = 183/355 (51%), Gaps = 46/355 (12%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ +GL NL L+L + + ++ L L SL + N +D+ PLSGLTNL
Sbjct: 91 VSPLSGLTNLTVLNLW-----NNQITDISSLSGLTSLTELYLNNNQITDISPLSGLTNLT 145
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEG------CPVTAAC--------------LDS 223
L ++ +++TD I+ L GL LT L L G P++ +
Sbjct: 146 VLNLNNNQITD--ISPLSGLTSLTGLILGGNQIKDVSPLSGLTNLTVLNLNNNQITDISP 203
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
LS L SL L L Q++D S + SL VL L N+ITD + L GLTNL++L L
Sbjct: 204 LSGLTSLTVLILYSNQITD--ISSLSGLTSLTVLILSDNQITD--ISPLSGLTNLDALYL 259
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
++ I D + L+GLTNL+++ L+ I+D + L+GL++L +L L+ QITD ++
Sbjct: 260 NNNQITD--ISPLSGLTNLDALYLNNNQITD--ISPLSGLTNLDALYLNNNQITD--ISP 313
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L+ LT L L L +ITD + L NL +L + +TD + + +L++L L L
Sbjct: 314 LSGLTNLDALYLNSNQITD--ISLLSGLTNLDALYLNSNQITD--ISPLLELTNLNYLIL 369
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
N +TD + +SGLT L L + N++IT + L L NL L L S ++T
Sbjct: 370 DNN-QITD--ISPLSGLTNLTILILDNNQITD--ISPLSGLTNLGGLILNSNQIT 419
>gi|149279200|ref|ZP_01885332.1| hypothetical protein PBAL39_12805 [Pedobacter sp. BAL39]
gi|149229962|gb|EDM35349.1| hypothetical protein PBAL39_12805 [Pedobacter sp. BAL39]
Length = 1105
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 112/414 (27%), Positives = 174/414 (42%), Gaps = 34/414 (8%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++ +++S SD+ GL C+ NLQ L +F + + D LE RG +L L+ RN
Sbjct: 605 QIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNM-LEDKYLEVFRGAESLRYLNLDRN 663
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ F GL NL LDL N ITD ++K L
Sbjct: 664 R-FNGSCLRNFVGL-NLEHLDLS-------------------------YNEITDDNLKLL 696
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NLKS+ + +++ G + +L L L +T CL S L L LN
Sbjct: 697 GSCPNLKSINLHLNELEGHGFDIFESTTELEWLTLGSNRLTDDCLRYFSRNLDLTALYLN 756
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q + G SL L+L N I + L+H + L L L L + +GD GL
Sbjct: 757 ENQFNGSGFVYLKNAKSLDTLSLSDNPIDSQYLIHFRNLDKLNYLELGNIRLGD-GLKYF 815
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDL 355
T LE I L TGI+D L+ L + LK ++ +T L L LD+
Sbjct: 816 TNSYLLEDIRLYNTGITDQDLQSLVFGNKLKRIDFSGNALTGEVFDIFRGKLEFLERLDI 875
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTL 414
+I S ++ ++ + + + + + ++LT L +S N NL D L
Sbjct: 876 NDNQIGSSLPDIFKDSHHINEVNLSNTQINPGHLNYFSHCAATLTRLYMS-NLNLQDNDL 934
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVTANDIKRLQS 467
+ G L LN+S +R T + L LK L L L L + ++ ++ L++
Sbjct: 935 SVFGGFQQLKDLNLSGNRFTGSFLIQLKHLATELEELNLANNQLNDQNLYYLEA 988
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 114/258 (44%), Gaps = 4/258 (1%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNEITDE 267
+ G + L + + ++R L G FS +L++L L FN + D+
Sbjct: 585 VQFSGIVIQDEMLSCFEGCDQIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNMLEDK 644
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L +G +L LNLD L N GL NLE ++LS+ I+D +L+ L +LK
Sbjct: 645 YLEVFRGAESLRYLNLDRNRFNGSCLRNFVGL-NLEHLDLSYNEITDDNLKLLGSCPNLK 703
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
S+NL ++ G S T L L L R+TD Y +L +L + +
Sbjct: 704 SINLHLNELEGHGFDIFESTTELEWLTLGSNRLTDDCLRYFSRNLDLTALYLNENQFNGS 763
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
G ++K+ SL L+LS N + + L L L L + N R+ GL++ L
Sbjct: 764 GFVYLKNAKSLDTLSLSDNP-IDSQYLIHFRNLDKLNYLELGNIRL-GDGLKYFTNSYLL 821
Query: 448 RSLTLESCKVTANDIKRL 465
+ L + +T D++ L
Sbjct: 822 EDIRLYNTGITDQDLQSL 839
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 101/413 (24%), Positives = 173/413 (41%), Gaps = 31/413 (7%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G +L +DLS +++TD L L C NL+S++ + ++ G + + L L+
Sbjct: 675 GLNLEHLDLSYNEITDDNLKLLGSCPNLKSINLHLN-ELEGHGFDIFESTTELEWLTL-G 732
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+N +T ++ F+ ++L L L G V LK L++L++ N I +
Sbjct: 733 SNRLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLKNAKSLDTLSLS-DNPIDSQYLIH 791
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L L++ ++ D G+ Y L + L +T L SL G+
Sbjct: 792 FRNLDKLNYLELGNIRLGD-GLKYFTNSYLLEDIRLYNTGITDQDLQSL-VFGN------ 843
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLV 294
LK ++ N +T E +G L LE L+++ IG
Sbjct: 844 -----------------KLKRIDFSGNALTGEVFDIFRGKLEFLERLDINDNQIGSSLPD 886
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
++ +NLS T I+ G L + ++L L + + D L+ L L
Sbjct: 887 IFKDSHHINEVNLSNTQINPGHLNYFSHCAATLTRLYMSNLNLQDNDLSVFGGFQQLKDL 946
Query: 354 DLFGARITDSGAAYLRNFK-NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
+L G R T S L++ L L + L D + +++ SSL LNLSQN D
Sbjct: 947 NLSGNRFTGSFLIQLKHLATELEELNLANNQLNDQNLYYLEAFSSLNTLNLSQNLVEGDG 1006
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ L + + L LN+S + I+ L+ L+ + L+ + L K + +K L
Sbjct: 1007 LINLRTSASVLEVLNLSGNSISDDDLQFLEHARFLKEVRLADNKFNGSCVKFL 1059
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 3/207 (1%)
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LTNLESINLSFTGISDGSLRKLAG 322
I DE L +G + + + + GL + NL+ + LSF + D L G
Sbjct: 592 IQDEMLSCFEGCDQIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNMLEDKYLEVFRG 651
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
SL+ LNLD + + L L L HLDL ITD L + NL+S+ +
Sbjct: 652 AESLRYLNLDRNRFNGSCLRNFVGL-NLEHLDLSYNEITDDNLKLLGSCPNLKSINLHLN 710
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L G + + L L L N LTD L S L +L ++ ++ +G +LK
Sbjct: 711 ELEGHGFDIFESTTELEWLTLGSN-RLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLK 769
Query: 443 PLKNLRSLTLESCKVTANDIKRLQSRD 469
K+L +L+L + + + ++ D
Sbjct: 770 NAKSLDTLSLSDNPIDSQYLIHFRNLD 796
>gi|290978509|ref|XP_002671978.1| predicted protein [Naegleria gruberi]
gi|284085551|gb|EFC39234.1| predicted protein [Naegleria gruberi]
Length = 284
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 2/230 (0%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S L NL +L I S++ + G+ + L+ LT LN+ + ++ + L +L L
Sbjct: 57 KSISDLKNLTTLDIGYSRIGNEGLESIGQLENLTRLNIRSNNI--GLVEPIINLKTLTAL 114
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ + ++G + SK+ L L + +++I +E +L L NL L+L IGDEG
Sbjct: 115 DIGENSIGNEGVKSISKLTELTSLFIDYDDINEEGAKYLCELPNLTILDLTGSNIGDEGA 174
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ T L+ + LS IS+ + L+ L+ L L L I D GL L+SL L +L
Sbjct: 175 KFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVDLILSLNDIGDEGLKHLSSLKMLNYL 234
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ G +ITD G ++R +NL+ + I LT G I+++S T L+L
Sbjct: 235 NVSGNQITDEGVVFIREMENLKRISITNNLLTAVGENLIQEMSITTDLDL 284
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 139/267 (52%), Gaps = 9/267 (3%)
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSKIGSLK- 255
+++K ++L L +++ L L L + N+ + + DG + I LK
Sbjct: 5 SFIKLFRELELFEGIDNEISSDFLKEFKYLRELTIIRNMAKHESILDGVGRAKSISDLKN 64
Query: 256 --VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLTNLESINLSFTGI 312
L++G++ I +E L + L NL LN+ S IG E ++NL LT ++++ I
Sbjct: 65 LTTLDIGYSRIGNEGLESIGQLENLTRLNIRSNNIGLVEPIINLKTLT---ALDIGENSI 121
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
+ ++ ++ L+ L SL +D I + G L L LT LDL G+ I D GA ++
Sbjct: 122 GNEGVKSISKLTELTSLFIDYDDINEEGAKYLCELPNLTILDLTGSNIGDEGAKFIGQST 181
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
L+ L + +++ GV ++ L+ L L LS N ++ D+ L+ +S L L LNVS ++
Sbjct: 182 KLKHLFLSLADISNVGVNYLSSLNELVDLILSLN-DIGDEGLKHLSSLKMLNYLNVSGNQ 240
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVTA 459
IT G+ ++ ++NL+ +++ + +TA
Sbjct: 241 ITDEGVVFIREMENLKRISITNNLLTA 267
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 106/232 (45%), Gaps = 29/232 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ D NL +LD + +I + GLE + L NLT L+ R NN I LV+
Sbjct: 59 ISDLKNLTTLDIGYS-RIGNEGLESIGQLENLTRLNIRSNN-------------IGLVE- 103
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++NLK L L+ N I + +K +S LT L SL I + + G
Sbjct: 104 ----------PIINLKTLTALDI----GENSIGNEGVKSISKLTELTSLFIDYDDINEEG 149
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
YL L LT+L+L G + + L +L L+ +S+ G S + L
Sbjct: 150 AKYLCELPNLTILDLTGSNIGDEGAKFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVD 209
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
L L N+I DE L HL L L LN+ I DEG+V + + NL+ I+++
Sbjct: 210 LILSLNDIGDEGLKHLSSLKMLNYLNVSGNQITDEGVVFIREMENLKRISIT 261
>gi|290991310|ref|XP_002678278.1| predicted protein [Naegleria gruberi]
gi|284091890|gb|EFC45534.1| predicted protein [Naegleria gruberi]
Length = 346
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 136/274 (49%), Gaps = 5/274 (1%)
Query: 149 VNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+N + L ++ ++N +K C+CI D + L NL +L ++C K+ D G+ + +++LT
Sbjct: 71 INGQFLQRIVAVNGMKKCDCIPFLDQ--VFDLKNLTTLDVNCMKIKDEGVKIISEMKQLT 128
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
LN+ ++ + +S + L LN++R + +G S++ L LN+ N I E
Sbjct: 129 NLNVGSSGISVEGVKYISGMNQLTNLNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAE 188
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
++ + L LN+ S I D+G +L + L ++N++ IS + ++ + SL
Sbjct: 189 GTKYISEMKELTCLNIMSNAIHDKGAEHLRQMPKLNTLNINSNSISVEGAKFISEIQSLT 248
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
+L++ I D G+ ++ + LT L I + GA ++ + L SL I +
Sbjct: 249 NLDIGFNTIGDDGVKFISKMEKLTKLYTMYINIGEKGAKHISEMEQLTSLNINSNNVGTE 308
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
G K++ ++ LT +N+ N DK + I T
Sbjct: 309 GAKYLCEMKHLTYMNICNNN--VDKQSQFIKDAT 340
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
L ++ L +L +L+++ +I D G+ ++ + LT+L++ + I+ G Y+ L +
Sbjct: 94 LDQVFDLKNLTTLDVNCMKIKDEGVKIISEMKQLTNLNVGSSGISVEGVKYISGMNQLTN 153
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L I + G +++ ++ LT LN+ N + T + IS + L LN+ ++ I
Sbjct: 154 LNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAEGT-KYISEMKELTCLNIMSNAIHDK 212
Query: 437 GLRHLKPLKNLRSLTLESCKVT---ANDIKRLQS 467
G HL+ + L +L + S ++ A I +QS
Sbjct: 213 GAEHLRQMPKLNTLNINSNSISVEGAKFISEIQS 246
>gi|290989200|ref|XP_002677229.1| predicted protein [Naegleria gruberi]
gi|284090835|gb|EFC44485.1| predicted protein [Naegleria gruberi]
Length = 308
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 115/235 (48%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D K + L +L IS + + Y+ L KL LN+ G +T LS L L
Sbjct: 57 DCKIFEWMKQLTNLSISYNNMNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLN 116
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L+++ C++ +G + S++ L LN+G N I E + H+ GL+ L L++ + IG+E
Sbjct: 117 TLHIDNCEIGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEE 176
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G L + L ++++S + + ++ + L SL++ I G ++ +T LT
Sbjct: 177 GAKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIAVNLIGVEGAKHISEMTQLT 236
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L++ I G ++ N K L+ L I G + + G + I DL LT LN+ N
Sbjct: 237 KLNMNCCNIGVEGVKHIINMKQLKHLIISGNNIGNKGCELILDLEQLTFLNIENN 291
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 108/208 (51%), Gaps = 1/208 (0%)
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
C+ F + L L++ +N + E ++ L L +LN++ I EG L+ L L +
Sbjct: 58 CKIFEWMKQLTNLSISYNNMNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNT 117
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+++ I + L+ + L +LN+ + +I G+ + L+ LT LD+ +I + G
Sbjct: 118 LHIDNCEIGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEEG 177
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
A YLR + L +L++ L G+++I ++ LT L+++ N + + + IS +T L
Sbjct: 178 AKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIAVNL-IGVEGAKHISEMTQLT 236
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTL 452
LN++ I G++H+ +K L+ L +
Sbjct: 237 KLNMNCCNIGVEGVKHIINMKQLKHLII 264
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 2/242 (0%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LT+LS NN + + K L L+ L++ H G L L +L +L+I
Sbjct: 64 MKQLTNLSISYNN-MNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNTLHIDN 122
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C I K LS + +L +L I +++ G+ ++ GL KLT L++ + L
Sbjct: 123 CE-IGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEEGAKYL 181
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+ L L+++ L G E S++ L L++ N I E H+ +T L LN++
Sbjct: 182 REMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIAVNLIGVEGAKHISEMTQLTKLNMN 241
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
C IG EG+ ++ + L+ + +S I + + L L LN++ I G+A +
Sbjct: 242 CCNIGVEGVKHIINMKQLKHLIISGNNIGNKGCELILDLEQLTFLNIENNNIDVEGIAYI 301
Query: 345 TS 346
S
Sbjct: 302 AS 303
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL---AALTSLTGLTHLDLFGARITDS 363
LS T D S + L ++ +L ++ R+ +D+ + + LT+L + +
Sbjct: 22 LSLTRNHDHSKMQGQFLQNIATLKVEKRR-SDSVVFDCKIFEWMKQLTNLSISYNNMNVE 80
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
Y+ L +L I G +T G K++ +L L L++ NC + + + +S + L
Sbjct: 81 NTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNTLHID-NCEIGVEGAKYLSEMKHL 139
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 473
+LN+ ++RI G++H+ L L L + + K+ K L+ R L NL
Sbjct: 140 TNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEEGAKYLREMRQLNNL 190
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 25/213 (11%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---------------------- 92
Q L++++++G+ +T G +L + L +L + C
Sbjct: 87 QLDKLINLNINGNAITHEGAKYLSELEQLNTLHIDNCEIGVEGAKYLSEMKHLTNLNIGS 146
Query: 93 -QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+I G++H+ GLS LT L NN I +G K + L LD+ G+ +
Sbjct: 147 NRIGVEGVKHIIGLSKLTFLDI-SNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYI 205
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+ +L SL+I N I K +S +T L L ++C + G+ ++ +++L L +
Sbjct: 206 SEMKQLTSLSIA-VNLIGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLII 264
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
G + + + L L +LN+ + +G
Sbjct: 265 SGNNIGNKGCELILDLEQLTFLNIENNNIDVEG 297
>gi|29823176|emb|CAD15503.2| probable lrr-gala family type III effector protein (gala 5)
[Ralstonia solanacearum GMI1000]
Length = 538
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 157/337 (46%), Gaps = 16/337 (4%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQI 187
+L LDL RC G + G+ L L + N I + L+ L SL +
Sbjct: 145 SLKALDLSRCR----GSITAAGIAHLSRLPLVRLNVRNKRIGAEGARLLANHPTLTSLNV 200
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S ++ G L +LT LN+ G + A +L+A +L L+++ ++ D+G +
Sbjct: 201 SNGRIGPEGAQALAANTRLTTLNVSGNRIGVAGAKALAANQTLRSLDVSDNRIGDEGARE 260
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
+ L L+ N I + L L SL + IGD G++ L L ++N+
Sbjct: 261 LAACTQLTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNV 320
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
TG+ ++ LA +L L LD I + G AL + T LT L L +RI GA
Sbjct: 321 ESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQA 380
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSL 426
L L +L++ + DAGV+ + ++L L++ +N NL D + + L +G T L +L
Sbjct: 381 LAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRN-NLEDASAVSLAAGKT-LTTL 438
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
++S + I G + L + TL + V++NDIK
Sbjct: 439 DISGNGIQDQGAKALAA-----NPTLTTLDVSSNDIK 470
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 131/491 (26%), Positives = 207/491 (42%), Gaps = 87/491 (17%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP
Sbjct: 66 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 123
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
+L + L+G+ TD L L ++L++LD + C I+ G+ HL
Sbjct: 124 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGSITAAGIAHLS 167
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L L L+ R N I A+G + A L L++ G L +L +LN+
Sbjct: 168 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 225
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N I + K L+ L+SL +S +++ D G L AAC
Sbjct: 226 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL-----------------AACTQ- 266
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L L+ NR + DG + +L L +G NEI D ++ L L +LN+
Sbjct: 267 ------LTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNV 320
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+S G+G +G+ L L + L I + LA +SL +L+L+ +I G A
Sbjct: 321 ESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQA 380
Query: 344 LTSLTGLTHLDL-------FGAR-----------------ITDSGAAYLRNFKNLRSLEI 379
L + T LT LDL G R + D+ A L K L +L+I
Sbjct: 381 LAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDI 440
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G G+ D G K + +LT L++S N ++ + ++ LVSL++ N+R+ +G R
Sbjct: 441 SGNGIQDQGAKALAANPTLTTLDVSSN-DIKNAGARALAANARLVSLDLRNNRMEESGTR 499
Query: 440 HLKPLKNLRSL 450
L + L SL
Sbjct: 500 ALLANRTLSSL 510
>gi|17546520|ref|NP_519922.1| GALA protein 3 [Ralstonia solanacearum GMI1000]
Length = 522
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 157/337 (46%), Gaps = 16/337 (4%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQI 187
+L LDL RC G + G+ L L + N I + L+ L SL +
Sbjct: 129 SLKALDLSRCR----GSITAAGIAHLSRLPLVRLNVRNKRIGAEGARLLANHPTLTSLNV 184
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S ++ G L +LT LN+ G + A +L+A +L L+++ ++ D+G +
Sbjct: 185 SNGRIGPEGAQALAANTRLTTLNVSGNRIGVAGAKALAANQTLRSLDVSDNRIGDEGARE 244
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
+ L L+ N I + L L SL + IGD G++ L L ++N+
Sbjct: 245 LAACTQLTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNV 304
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
TG+ ++ LA +L L LD I + G AL + T LT L L +RI GA
Sbjct: 305 ESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQA 364
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSL 426
L L +L++ + DAGV+ + ++L L++ +N NL D + + L +G T L +L
Sbjct: 365 LAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRN-NLEDASAVSLAAGKT-LTTL 422
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
++S + I G + L + TL + V++NDIK
Sbjct: 423 DISGNGIQDQGAKALAA-----NPTLTTLDVSSNDIK 454
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 131/491 (26%), Positives = 207/491 (42%), Gaps = 87/491 (17%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP
Sbjct: 50 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 107
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
+L + L+G+ TD L L ++L++LD + C I+ G+ HL
Sbjct: 108 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGSITAAGIAHLS 151
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L L L+ R N I A+G + A L L++ G L +L +LN+
Sbjct: 152 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 209
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N I + K L+ L+SL +S +++ D G L AAC
Sbjct: 210 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL-----------------AACTQ- 250
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L L+ NR + DG + +L L +G NEI D ++ L L +LN+
Sbjct: 251 ------LTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNV 304
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+S G+G +G+ L L + L I + LA +SL +L+L+ +I G A
Sbjct: 305 ESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQA 364
Query: 344 LTSLTGLTHLDL-------FGAR-----------------ITDSGAAYLRNFKNLRSLEI 379
L + T LT LDL G R + D+ A L K L +L+I
Sbjct: 365 LAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDI 424
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G G+ D G K + +LT L++S N ++ + ++ LVSL++ N+R+ +G R
Sbjct: 425 SGNGIQDQGAKALAANPTLTTLDVSSN-DIKNAGARALAANARLVSLDLRNNRMEESGTR 483
Query: 440 HLKPLKNLRSL 450
L + L SL
Sbjct: 484 ALLANRTLSSL 494
>gi|209154162|gb|ACI33313.1| F-box/LRR-repeat protein 14 [Salmo salar]
Length = 403
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 181/384 (47%), Gaps = 69/384 (17%)
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKL 157
H RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 69 HTRGIKKVQILSLRRSLSYVIQGMP------NIESLNLCGCFNLTDNGLGHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL+ L++ S +T++G+ + GL KL LNL C
Sbjct: 123 RILNLSLCKPITDSSLGRIAQYLKNLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSC 182
Query: 215 PVTA-------ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
+ A + +A G LF QL+ C+K +TD
Sbjct: 183 RHVSDVGIGHLAGMTRSAAEGCLFLE-----QLTLQDCQK----------------LTDL 221
Query: 268 CLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLS 324
L H+ KGL NL+ LNL CG I D G+++L+ +T+L S+NL S ISD + LA +
Sbjct: 222 SLKHVSKGLANLKVLNLSFCGGISDSGMIHLSNMTHLWSLNLRSCDNISDTGIMHLA-MG 280
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGG 383
SL+ LD F +I D AY+ + L+SL +C
Sbjct: 281 SLQLSGLDVS---------------------FCDKIGDQSLAYIAQGLYQLKSLSLCSCH 319
Query: 384 LTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRH 440
++D G+ + ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL
Sbjct: 320 ISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLER 379
Query: 441 LKPLKNLRSLTLESCKVTANDIKR 464
+ L L+ L L ++T ++ R
Sbjct: 380 ITQLPCLKVLNLGLWQMTESEKVR 403
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 142/289 (49%), Gaps = 41/289 (14%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 133 ITDSSLGRIAQYLKNLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGH 192
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL------KGLM 155
L G++ A G + L +L L+ C + L +L KGL
Sbjct: 193 LAGMTR-----------------SAAEGCLFLEQLTLQDCQK----LTDLSLKHVSKGLA 231
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEG 213
L+ LN+ +C I+DS M LS +T+L SL + SC ++D+GI +L G +L+ L++
Sbjct: 232 NLKVLNLSFCGGISDSGMIHLSNMTHLWSLNLRSCDNISDTGIMHLAMGSLQLSGLDVSF 291
Query: 214 CPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDE 267
C SL+ + Y L+L C +SDDG + + + LK LN+G ITD+
Sbjct: 292 CDKIGD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDK 349
Query: 268 CLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISD 314
L + LT L ++L C I GL +T L L+ +NL +++
Sbjct: 350 GLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 398
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 48/241 (19%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--LTGLTNLESINLSF-TGISDGSLRKLA------ 321
++G+ N+ESLNL C + D GL + + + +L +NLS I+D SL ++A
Sbjct: 89 IQGMPNIESLNLCGCFNLTDNGLGHAFVQDIPSLRILNLSLCKPITDSSLGRIAQYLKNL 148
Query: 322 ---------------------GLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHLD 354
GL LKSLNL + R ++D G+ L +T G L+
Sbjct: 149 EVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLFLE 208
Query: 355 LFG----ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
++TD ++ + NL+ +L CGG ++D+G+ H+ +++ L LNL
Sbjct: 209 QLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCGG-ISDSGMIHLSNMTHLWSLNLRSCD 267
Query: 408 NLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKR 464
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ + I R
Sbjct: 268 NISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINR 327
Query: 465 L 465
+
Sbjct: 328 M 328
>gi|290987592|ref|XP_002676506.1| predicted protein [Naegleria gruberi]
gi|284090109|gb|EFC43762.1| predicted protein [Naegleria gruberi]
Length = 259
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 113/227 (49%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L L+I + + D +++LT L++ ++ + + L YLN+N
Sbjct: 32 MKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTN 91
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ + G + SK+ L LN+G N I ++ ++ + L LN+ SC IG+ G +++
Sbjct: 92 NVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANHISR 151
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+N G+ D ++ ++ L+ L LN+ I++ GL ++ + + HLD+
Sbjct: 152 MKQLISLNTGRNGLDDEGVKYISELNQLNFLNIADSNISEEGLNYISGMKQIIHLDISNN 211
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
I D GA + K L L+I + + G K+I ++ LT L++ +
Sbjct: 212 FIDDEGAEIISRMKQLTRLDISNNSIGEEGTKYISEMKKLTYLDIGE 258
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 108/208 (51%), Gaps = 7/208 (3%)
Query: 248 FSKIGSLKVLNLGFNEITDE---CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
F + L L +G N I D+ C + +K LT SL++ I EG + +T L
Sbjct: 29 FGTMKQLTKLKIGENNIGDQNAKCFIEMKQLT---SLDVYHNNISKEGAKFIGEMTQLTY 85
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+N++ + + + ++ L+ L +LN+ I + G ++ + LT L+++ I + G
Sbjct: 86 LNVNTNNVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRG 145
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
A ++ K L SL GL D GVK+I +L+ L LN++ + N++++ L ISG+ ++
Sbjct: 146 ANHISRMKQLISLNTGRNGLDDEGVKYISELNQLNFLNIA-DSNISEEGLNYISGMKQII 204
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L++SN+ I G + +K L L +
Sbjct: 205 HLDISNNFIDDEGAEIISRMKQLTRLDI 232
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 99/214 (46%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D + K + L SL + + ++ G ++ + +LT LN+ V +S
Sbjct: 43 NNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTNNVGELGAKYIS 102
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L L LN+ + + G E S++ L LN+ I + H+ + L SLN
Sbjct: 103 KLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANHISRMKQLISLNTGR 162
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
G+ DEG+ ++ L L +N++ + IS+ L ++G+ + L++ I D G ++
Sbjct: 163 NGLDDEGVKYISELNQLNFLNIADSNISEEGLNYISGMKQIIHLDISNNFIDDEGAEIIS 222
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
+ LT LD+ I + G Y+ K L L+I
Sbjct: 223 RMKQLTRLDISNNSIGEEGTKYISEMKKLTYLDI 256
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
I D + + + L SL++ I+ G + +T LT+L++ + + GA Y+
Sbjct: 45 IGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTNNVGELGAKYISKL 104
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
L +L I + + G ++I ++ LT LN+ +CN+ ++ IS + L+SLN +
Sbjct: 105 NQLITLNIGLNSIGEQGAEYISEMKQLTDLNIY-SCNIGNRGANHISRMKQLISLNTGRN 163
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVT 458
+ G++++ L L L + ++
Sbjct: 164 GLDDEGVKYISELNQLNFLNIADSNIS 190
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D+G+ ++ LT L + I D A K L SL++ ++ G K I +++
Sbjct: 25 DSGI--FGTMKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQ 82
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
LT LN++ N N+ + + IS L L++LN+ + I G ++ +K L L + SC +
Sbjct: 83 LTYLNVNTN-NVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNI 141
Query: 458 ---TANDIKRLQS 467
AN I R++
Sbjct: 142 GNRGANHISRMKQ 154
>gi|195383050|ref|XP_002050239.1| GJ20310 [Drosophila virilis]
gi|194145036|gb|EDW61432.1| GJ20310 [Drosophila virilis]
Length = 542
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 120/371 (32%), Positives = 190/371 (51%), Gaps = 62/371 (16%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 206 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 247
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQ 122
+V D L H D NL++LD + C QI+D L + + L NL +L IT
Sbjct: 248 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 307
Query: 123 GMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCITDSD 172
G+ A GL L L+L C I G+ +L G ++LE L ++ C ++D
Sbjct: 308 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 367
Query: 173 MKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +G
Sbjct: 368 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDIGMA 420
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
+ L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+ C I
Sbjct: 421 Y--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQCQI 465
Query: 289 GDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAAL 344
D+G++ + L LE++N+ + I+D L+ LA LS+LK+++L Q++ G+ +
Sbjct: 466 TDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDII 525
Query: 345 TSLTGLTHLDL 355
L L L+L
Sbjct: 526 MKLPKLQKLNL 536
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 111/329 (33%), Positives = 173/329 (52%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L H V+L L
Sbjct: 216 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 267
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 268 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 327
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 328 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 387
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRK 319
+TD L HL + LE LNL SC I D G+ LT G + + S+++SF ISD +L
Sbjct: 388 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTH 447
Query: 320 LA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLR 375
+A GL L+SL+L+ QITD G+ + SL L +L++ +RITD G L + NL+
Sbjct: 448 IAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLK 507
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
++++ G L+ G+ I L L LNL
Sbjct: 508 TIDLYGCTQLSSKGIDIIMKLPKLQKLNL 536
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 161/317 (50%), Gaps = 33/317 (10%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 236 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLET 295
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 296 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 345
Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAG 322
E G LE L L C + DE L ++ GLT+L+SINLSF ++D L+ LA
Sbjct: 346 AE------GNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLAR 399
Query: 323 LSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLE 378
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 400 MPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLS 459
Query: 379 ICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITS 435
+ +TD G+ I K L L LN+ Q +TDK L+ L L+ L ++++ ++++S
Sbjct: 460 LNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSS 519
Query: 436 AGLRHLKPLKNLRSLTL 452
G+ + L L+ L L
Sbjct: 520 KGIDIIMKLPKLQKLNL 536
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 127/272 (46%), Gaps = 56/272 (20%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
G+ LT LNL GC A ++ LG F ++L +LK L+L
Sbjct: 236 GVPALTSLNLSGC-FNVADMN----LGHAFSVDL----------------PNLKTLDLSL 274
Query: 262 -NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINL-SFTGISDGS 316
+ITD L + + L NLE+L L C I + GL+ + GL L +NL S ISD
Sbjct: 275 CKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG 334
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYL-RNF 371
+ LAG S R+ + L L+ G R++D ++ +
Sbjct: 335 IGHLAGFS---------RETAEGNL----------QLEYLGLQDCQRLSDEALGHIAQGL 375
Query: 372 KNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNV 428
+L+S L C +TD+G+KH+ + L LNL N++D + L G +G+ SL+V
Sbjct: 376 TSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 434
Query: 429 SN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
S +I+ L H+ + L LRSL+L C++T
Sbjct: 435 SFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 466
>gi|320166208|gb|EFW43107.1| tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864]
Length = 1869
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 158/367 (43%), Gaps = 7/367 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GL+ LT L NN ++A AF GL L +L L + T +
Sbjct: 70 QITSISSSAFTGLTALTYLQLN-NNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSA-- 126
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L++L + + N I + SGLT L L + +++T GL KL L
Sbjct: 127 FTGLTALQTLYL-YNNQIATVAINAFSGLTALVQLYLYNNQITSISANAFSGLSKLNTLQ 185
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L ++A + + L +L L L Q++ F+ + +L+ L L N+I +
Sbjct: 186 LNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQTLYLYNNQIATVAIN 245
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
GLT L L LD+ I +GL+ L +++L +S GL++L L
Sbjct: 246 AFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLR 305
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
LD QIT +A T LT L L L+ +I L+ L + +T
Sbjct: 306 LDTNQITTVPSSAFTGLTALQTLYLYNNQIITVATNAFSGLAALQVLRLDTNQITTVPAN 365
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
LS+L L LS N L+ +GLT L L + N++IT+ L L++L
Sbjct: 366 AFSGLSALNTLQLSNNW-LSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALQTL 424
Query: 451 TLESCKV 457
L + ++
Sbjct: 425 YLYNNQI 431
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 122/459 (26%), Positives = 191/459 (41%), Gaps = 18/459 (3%)
Query: 15 VYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQG----SSLLSVDLSGSDV 69
+Y+ +T +S AF + L L L N+ W+ I S ++L + L + +
Sbjct: 162 LYNNQITSISANAFSGLSKLNTLQL------NNNWLSAIPSSAFTGLTALTQLLLYNNQI 215
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
T + LQ+L + + QI+ + GL+ L L N IT AF+G
Sbjct: 216 TTVPSSAFTGLTALQTL-YLYNNQIATVAINAFSGLTALVQLRLDTNQ-ITTVPANAFSG 273
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L L L L GL L L + N IT +GLT L++L +
Sbjct: 274 LSKLNTLHLYNNWLSAIPSSAFTGLTALTQLRLD-TNQITTVPSSAFTGLTALQTLYLYN 332
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++ GL L +L L+ +T ++ S L +L L L+ LS F+
Sbjct: 333 NQIITVATNAFSGLAALQVLRLDTNQITTVPANAFSGLSALNTLQLSNNWLSAIPSSAFT 392
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
+ +L L L N+IT GLT L++L L + I + +GLT L + L
Sbjct: 393 GLTALTQLQLYNNQITTVPSSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYN 452
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
I+ S +GLS L +L L+ ++ +A T LT LT L L+ +IT ++
Sbjct: 453 NQITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFT 512
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
L+ L + + + L++L L L N +T SGL+ L +L++
Sbjct: 513 GLTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTN-QITTVPANAFSGLSKLNTLHLY 571
Query: 430 N---SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
N S I S+ L L LR T + V AN L
Sbjct: 572 NNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGL 610
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 147/348 (42%), Gaps = 12/348 (3%)
Query: 116 NNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN IT AF GL LV+L L + T I G+ L L + + N IT +
Sbjct: 764 NNQITTVAANAFTGLTALVQLQLYGNQITTISASA--FAGMSSLVQLYL-YSNRITAIFV 820
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+GLT+L L IS +++T GL +T L+L ++A + + L +L L
Sbjct: 821 NAFTGLTHLSLLDISNNQITSLPANAFTGLTAMTQLSLYNNSLSAVPSSAFTGLTALQAL 880
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGD 290
L Q++ F+ + +L L L N+IT GL+ L L L++ I
Sbjct: 881 WLYNNQITSVVVNAFTSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQLNNNWLSAIPS 940
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
LT LT L+ N T + + GL++L L+L QIT +A LT L
Sbjct: 941 SAFTGLTALTQLQLYNNQITTVPSSAFT---GLTALTQLSLYGNQITTISASAFAGLTAL 997
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L L IT A L L++ G +T L +L LNL N L+
Sbjct: 998 QALYLNNNTITTIAANAFAGLTALNWLDLSGSQITSIPANVFSSLPALAQLNLYNNW-LS 1056
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+GLT L L + +RIT+ L L L L+S ++T
Sbjct: 1057 AVPTSAFTGLTALTQLTMYGNRITTISANAFTGLNALVQLFLQSNQIT 1104
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 156/370 (42%), Gaps = 33/370 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-L 151
QI+ GL+ L L N IT AFAG+ +LV+L L RI VN
Sbjct: 766 QITTVAANAFTGLTALVQLQLYGNQ-ITTISASAFAGMSSLVQLYL-YSNRITAIFVNAF 823
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI---SCSKVTDSGIAYLKGLQKLTL 208
GL L L+I N IT +GLT + L + S S V S L LQ L L
Sbjct: 824 TGLTHLSLLDIS-NNQITSLPANAFTGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALWL 882
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
N + +T+ +++ ++L +L L L Q++ FS + L +L L N ++
Sbjct: 883 YNNQ---ITSVVVNAFTSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQLNNNWLSAIP 939
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
GLT L L L + I TGLT L ++L I+ S AGL++L++
Sbjct: 940 SSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALTQLSLYGNQITTISASAFAGLTALQA 999
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L L+ IT A LT L LDL G++IT A + L L + L+
Sbjct: 1000 LYLNNNTITTIAANAFAGLTALNWLDLSGSQITSIPANVFSSLPALAQLNLYNNWLSAVP 1059
Query: 389 VKHIKDLSSLTLLNLS-----------------------QNCNLTDKTLELISGLTGLVS 425
L++LT L + Q+ +T + +GL+ L
Sbjct: 1060 TSAFTGLTALTQLTMYGNRITTISANAFTGLNALVQLFLQSNQITTISASAFTGLSLLTQ 1119
Query: 426 LNVSNSRITS 435
L +SN++IT+
Sbjct: 1120 LYLSNNQITT 1129
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 157/350 (44%), Gaps = 3/350 (0%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L+ + L G+ +T S+L L + + +I+ + GL++L+ L N
Sbjct: 779 TALVQLQLYGNQITTISASAFAGMSSLVQL-YLYSNRITAIFVNAFTGLTHLSLLDIS-N 836
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT+ AF GL + +L L + GL L++L + + N IT +
Sbjct: 837 NQITSLPANAFTGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALWL-YNNQITSVVVNAF 895
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L LQ+ +++T + GL KL+LL L ++A + + L +L L L
Sbjct: 896 TSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLY 955
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++ F+ + +L L+L N+IT GLT L++L L++ I
Sbjct: 956 NNQITTVPSSAFTGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAANAF 1015
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
GLT L ++LS + I+ + L +L LNL ++ +A T LT LT L ++
Sbjct: 1016 AGLTALNWLDLSGSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMY 1075
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
G RIT A L L + +T LS LT L LS N
Sbjct: 1076 GNRITTISANAFTGLNALVQLFLQSNQITTISASAFTGLSLLTQLYLSNN 1125
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 152/345 (44%), Gaps = 7/345 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GLS L +L NN ++A AF GL L +L L + T +
Sbjct: 358 QITTVPANAFSGLSALNTLQLS-NNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSA-- 414
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L++L + + N I + SGLT L L + +++T GL KL L
Sbjct: 415 FTGLTALQTLYL-YNNQIATVAINAFSGLTALVQLYLYNNQITSISANAFSGLSKLNTLQ 473
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L ++A + + L +L L L Q++ F+ + +L+ L L N+I +
Sbjct: 474 LNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQFLYLYNNQIATVAIN 533
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
GLT L L LD+ I +GL+ L +++L +S GL++L L
Sbjct: 534 AFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLR 593
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
LD QIT A + LT L +L L+ +IT A L L++ G +T
Sbjct: 594 LDTNQITTVPANAFSGLTALLYLYLYNNQITTVPANAFSGLTALVQLQLYGNQITTIPSS 653
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
+ LS+LT L L N +T SGLT L L + N+ ITS
Sbjct: 654 ALTGLSALTQLLLYNN-RITSVPANGFSGLTALTDLRLFNNTITS 697
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 104/383 (27%), Positives = 161/383 (42%), Gaps = 30/383 (7%)
Query: 104 GLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
G S LT+L+ R NN IT+ AF GL L LDL + T I G GL L
Sbjct: 678 GFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGA--FSGLTALTQ 735
Query: 160 LNI--KWC---------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
L + W N IT +GLT L LQ+ +++T
Sbjct: 736 LLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTIS 795
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
+ G+ L L L +TA +++ + L L L+++ Q++ F+ + ++
Sbjct: 796 ASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNNQITSLPANAFTGLTAMTQ 855
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316
L+L N ++ GLT L++L L + I + T LT L + L I+
Sbjct: 856 LSLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQLYGNQITTIP 915
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+GLS L L L+ ++ +A T LT LT L L+ +IT ++ L
Sbjct: 916 ASAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALTQ 975
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L + G +T L++L L L+ N +T +GLT L L++S S+ITS
Sbjct: 976 LSLYGNQITTISASAFAGLTALQALYLNNNT-ITTIAANAFAGLTALNWLDLSGSQITSI 1034
Query: 437 GLRHLKPLKNLRSLTLESCKVTA 459
L L L L + ++A
Sbjct: 1035 PANVFSSLPALAQLNLYNNWLSA 1057
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 110/393 (27%), Positives = 165/393 (41%), Gaps = 54/393 (13%)
Query: 116 NNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN IT AF+GL LV+L L + T I L GL L L + + N IT
Sbjct: 620 NNQITTVPANAFSGLTALVQLQLYGNQITTIPSSA--LTGLSALTQL-LLYNNRITSVPA 676
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPVTAACLDSLSALGSL 230
SGLT L L++ + +T GL KLT L+L + + A L+AL L
Sbjct: 677 NGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQL 736
Query: 231 FYLN---------------------LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
N L Q++ F+ + +L L L N+IT
Sbjct: 737 LLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTISA 796
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS-----------FTGIS----- 313
G+++L L L S I + TGLT+L +++S FTG++
Sbjct: 797 SAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNNQITSLPANAFTGLTAMTQL 856
Query: 314 ---DGSLRKLA-----GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
+ SL + GL++L++L L QIT + A TSLT L L L+G +IT A
Sbjct: 857 SLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQLYGNQITTIPA 916
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
+ L L++ L+ L++LT L L N +T +GLT L
Sbjct: 917 SAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLYNN-QITTVPSSAFTGLTALTQ 975
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L++ ++IT+ L L++L L + +T
Sbjct: 976 LSLYGNQITTISASAFAGLTALQALYLNNNTIT 1008
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 120/268 (44%), Gaps = 10/268 (3%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLE- 158
GL+ L +L + NN IT+ + AF L LV+L L + T I GL KL
Sbjct: 871 FTGLTALQAL-WLYNNQITSVVVNAFTSLTALVQLQLYGNQITTIPASA--FSGLSKLSL 927
Query: 159 -SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
LN W + I S +GLT L LQ+ +++T + GL LT L+L G +T
Sbjct: 928 LQLNNNWLSAIPSSA---FTGLTALTQLQLYNNQITTVPSSAFTGLTALTQLSLYGNQIT 984
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+ + L +L L LN ++ F+ + +L L+L ++IT L
Sbjct: 985 TISASAFAGLTALQALYLNNNTITTIAANAFAGLTALNWLDLSGSQITSIPANVFSSLPA 1044
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L LNL + + TGLT L + + I+ S GL++L L L + QIT
Sbjct: 1045 LAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRITTISANAFTGLNALVQLFLQSNQIT 1104
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGA 365
+A T L+ LT L L +IT A
Sbjct: 1105 TISASAFTGLSLLTQLYLSNNQITTISA 1132
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 161/371 (43%), Gaps = 11/371 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV--KLDLERCTRIHGGLVN 150
QI+ GL+ L L + NN I + AF+GL LV +LD + T +
Sbjct: 502 QITTVPSSAFTGLTALQFL-YLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANA-- 558
Query: 151 LKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
GL KL +L++ W + I S +GLT L L++ +++T GL L
Sbjct: 559 FSGLSKLNTLHLYNNWLSAIPSSA---FTGLTALTQLRLDTNQITTVPANAFSGLTALLY 615
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L +T ++ S L +L L L Q++ + + +L L L N IT
Sbjct: 616 LYLYNNQITTVPANAFSGLTALVQLQLYGNQITTIPSSALTGLSALTQLLLYNNRITSVP 675
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
GLT L L L + I TGLT L ++LS ++ +GL++L
Sbjct: 676 ANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQ 735
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L L ++ +A T LT L +L L+ +IT A L L++ G +T
Sbjct: 736 LLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTIS 795
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
+SSL L L N +T + +GLT L L++SN++ITS L +
Sbjct: 796 ASAFAGMSSLVQLYLYSN-RITAIFVNAFTGLTHLSLLDISNNQITSLPANAFTGLTAMT 854
Query: 449 SLTLESCKVTA 459
L+L + ++A
Sbjct: 855 QLSLYNNSLSA 865
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 138/331 (41%), Gaps = 19/331 (5%)
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---CS 190
V D T I G+ ++ L S N IT +GLT L LQ++ S
Sbjct: 43 VNCDSRYLTTIPTGIPATTTILYLSS------NQITSISSSAFTGLTALTYLQLNNNWLS 96
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+ S L L +L L N + V ++ L+AL +L+ N Q++ FS
Sbjct: 97 AIPSSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALQTLYLYN---NQIATVAINAFSG 153
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLTNLESINL 307
+ +L L L N+IT GL+ L +L L++ I LT LT L N
Sbjct: 154 LTALVQLYLYNNQITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNN 213
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
T + + GL++L++L L QI + A + LT L L L +IT A
Sbjct: 214 QITTVPSSAFT---GLTALQTLYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANA 270
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L +L + L+ L++LT L L N +T +GLT L +L
Sbjct: 271 FSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLRLDTN-QITTVPSSAFTGLTALQTLY 329
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ N++I + L L+ L L++ ++T
Sbjct: 330 LYNNQIITVATNAFSGLAALQVLRLDTNQIT 360
>gi|300691655|ref|YP_003752650.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299078715|emb|CBJ51374.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum PSI07]
Length = 608
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 141/471 (29%), Positives = 206/471 (43%), Gaps = 50/471 (10%)
Query: 3 PRDISQQIFNELV-YSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWM------DVIASQ 55
PR + + EL SR + V+ RD A+ LG YP + + D + +
Sbjct: 103 PRRAMRAVSRELRDASRAV--VTHLTIRDPAVLR-HLGNYPALKSLRLKGALTLDALKAL 159
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
L +DLS GS ++ +GL HL L+SL I+I G + L ++L SLS
Sbjct: 160 PPGLEHLDLSRCTGSAMSSAGLAHLA-ARPLKSLCM-IGIEIGVEGAQRLAASTSLASLS 217
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDS 171
I + +A A ++ LDL RI G L G L SLN+ + N I D
Sbjct: 218 LI-GCEIGDRAAEALAASQSIKSLDLS-ANRIGRDGARALAG-APLVSLNL-YSNAIGDE 273
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ L+ L SL +S + + D+G L LT LNL+G
Sbjct: 274 GARALATSRTLTSLNLSSNGIDDAGAGALADNTLLTQLNLQG------------------ 315
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
NR + G + + SL L+LG N + D L G +L SL++ IGD+
Sbjct: 316 ----NR--IGRGGAQALANSTSLTDLDLGNNRLGDRGARALAGSKSLTSLSVRGNEIGDK 369
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G L L+S+NLS+ IS +R L G ++L L+L A I +G +AL L
Sbjct: 370 GAKALARNATLKSLNLSYNLISLRGVRALGGSATLSVLDLCACDIDSSGASALARNASLA 429
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
L L RI D GA L L L + G G+ G + + SL L+L N + D
Sbjct: 430 SLYLGSNRIGDRGARALAKNSTLTRLALSGNGIHTTGAQALAGNDSLISLDLGGN-EIDD 488
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
++ L+SL++ +RI SAG + L +S TL ++AN I
Sbjct: 489 DGAAALARHPRLISLDLRGNRIRSAGAQQLA-----KSATLAELDLSANRI 534
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 162/354 (45%), Gaps = 5/354 (1%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L+S++L + + D G L L SL+ + I D G L + LT L+ +
Sbjct: 257 GAPLVSLNLYSNAIGDEGARALATSRTLTSLNLSSN-GIDDAGAGALADNTLLTQLNLQ- 314
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I G +A A +L LDL G L G L SL+++ N I D K
Sbjct: 315 GNRIGRGGAQALANSTSLTDLDLGNNRLGDRGARALAGSKSLTSLSVRG-NEIGDKGAKA 373
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ LKSL +S + ++ G+ L G L++L+L C + ++ +L+ SL L L
Sbjct: 374 LARNATLKSLNLSYNLISLRGVRALGGSATLSVLDLCACDIDSSGASALARNASLASLYL 433
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ D G +K +L L L N I L G +L SL+L I D+G
Sbjct: 434 GSNRIGDRGARALAKNSTLTRLALSGNGIHTTGAQALAGNDSLISLDLGGNEIDDDGAAA 493
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L L S++L I ++LA ++L L+L A +I G AL+ T LT L++
Sbjct: 494 LARHPRLISLDLRGNRIRSAGAQQLAKSATLAELDLSANRIGAEGAEALSRSTVLTTLNV 553
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
I D+GA L +L SL+ G+ + G + ++ + LT QN N
Sbjct: 554 SDNAIGDAGALALAKSTSLISLDARRSGIGEVGARALEANTRLT--GTPQNPNF 605
>gi|299065269|emb|CBJ36437.1| leucine-rich-repeat type III effector protein (GALA8) [Ralstonia
solanacearum CMR15]
Length = 524
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 168/381 (44%), Gaps = 30/381 (7%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR----RNNAITAQGMKAFAGLINLVKL 136
++++ +D + C S + GL L L ++ +T+ G +A A L L
Sbjct: 103 ASVRHIDLSGCNATSSTSATSVAGLKYLAKLPITSLVIQDAGMTSVGARALAASDTLTSL 162
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
DL G L L +LN+ N I + L+ L +L + +K+ D+G
Sbjct: 163 DLRGNKITDLGAQALATSRTLTTLNLD-TNTIGAKGAQALAASRTLTTLNLRGNKIEDAG 221
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
L LT L+ EGC + A + +L+A SL LNL + D G + + +L
Sbjct: 222 AQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLAGNNIDDAGAQALAASRTLTT 281
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316
L+L N+I D + L L SL +D C IG G L +L ++N+S + D
Sbjct: 282 LDLSANKIGDAGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISHNPVGDAG 341
Query: 317 LRKLA---GLSSLK---------------------SLNLDARQITDTGLAALTSLTGLTH 352
+ LA L+S+K SL+LDA QI D G AL + LT
Sbjct: 342 AQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGAQALATSNTLTS 401
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L++ I D G L + L SL++ + V+ + + +LT LN+S N N+ D
Sbjct: 402 LNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALAENCTLTSLNVSGN-NIGDA 460
Query: 413 TLELISGLTGLVSLNVSNSRI 433
+L++ L SLNV SRI
Sbjct: 461 GAQLLAANRSLTSLNVCWSRI 481
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 164/349 (46%), Gaps = 3/349 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DL G+ +TD G L L +L+ + I G + L LT+L+ R N
Sbjct: 158 TLTSLDLRGNKITDLGAQALATSRTLTTLNLDTNT-IGAKGAQALAASRTLTTLNLR-GN 215
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G +A A L L E C G+ L L +LN+ N I D+ + L+
Sbjct: 216 KIEDAGAQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLA-GNNIDDAGAQALA 274
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L +L +S +K+ D+G L + L L ++ C + AA +L+ SL LN++
Sbjct: 275 ASRTLTTLDLSANKIGDAGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISH 334
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ D G + + +L + +I L +L SL+LD+ IGD+G L
Sbjct: 335 NPVGDAGAQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGAQALA 394
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L S+N+ + I D ++ LA L+SL++ +I T + AL LT L++ G
Sbjct: 395 TSNTLTSLNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALAENCTLTSLNVSG 454
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
I D+GA L ++L SL +C + DAG + SLT L++S N
Sbjct: 455 NNIGDAGAQLLAANRSLTSLNVCWSRIGDAGALALAANRSLTSLDVSVN 503
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 155/322 (48%), Gaps = 3/322 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++L G+ + D+G L + L SL C +I G++ L +LT+L+ NN
Sbjct: 206 TLTTLNLRGNKIEDAGAQALAASTTLTSLSAEGC-RIGLAGVQALAASRSLTTLNLAGNN 264
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G +A A L LDL G + L L SL + C I + + L+
Sbjct: 265 -IDDAGAQALAASRTLTTLDLSANKIGDAGALALAASRTLASLEVDHCE-IGAAGAQALA 322
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+L +L IS + V D+G L + LT + + C + AA +L+A SL L+L+
Sbjct: 323 TSDSLAALNISHNPVGDAGAQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDA 382
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
Q+ DDG + + +L LN+ +N I D + L LESL++ IG + L
Sbjct: 383 NQIGDDGAQALATSNTLTSLNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALA 442
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L S+N+S I D + LA SL SLN+ +I D G AL + LT LD+
Sbjct: 443 ENCTLTSLNVSGNNIGDAGAQLLAANRSLTSLNVCWSRIGDAGALALAANRSLTSLDVSV 502
Query: 358 ARITDSGAAYLRNFKNLRSLEI 379
RI ++GA L + L SL++
Sbjct: 503 NRIGEAGARALVANRFLVSLKM 524
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 121/257 (47%), Gaps = 11/257 (4%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLN--------LNRCQLSDDGCEKFSKIGSLKVLNLG 260
++L GC T++ S +++ L YL + ++ G + +L L+L
Sbjct: 108 IDLSGCNATSST--SATSVAGLKYLAKLPITSLVIQDAGMTSVGARALAASDTLTSLDLR 165
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
N+ITD L L +LNLD+ IG +G L L ++NL I D + L
Sbjct: 166 GNKITDLGAQALATSRTLTTLNLDTNTIGAKGAQALAASRTLTTLNLRGNKIEDAGAQAL 225
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
A ++L SL+ + +I G+ AL + LT L+L G I D+GA L + L +L++
Sbjct: 226 AASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLAGNNIDDAGAQALAASRTLTTLDLS 285
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
+ DAG + +L L + +C + + ++ L +LN+S++ + AG +
Sbjct: 286 ANKIGDAGALALAASRTLASLEV-DHCEIGAAGAQALATSDSLAALNISHNPVGDAGAQA 344
Query: 441 LKPLKNLRSLTLESCKV 457
L + L S+ + C++
Sbjct: 345 LAICRTLTSIKAKDCQI 361
>gi|442624469|ref|NP_001261138.1| partner of paired, isoform B [Drosophila melanogaster]
gi|440214583|gb|AGB93669.1| partner of paired, isoform B [Drosophila melanogaster]
Length = 562
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 190/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 300
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 301 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 360
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 361 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 413
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 414 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 458
Query: 286 CGIGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGL 341
C I D G++ + L LE++N+ + I+D L+ LA L++LK+++L Q++ G+
Sbjct: 459 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518
Query: 342 AALTSLTGLTHLDL 355
+ L L L+L
Sbjct: 519 DIIMKLPKLQKLNL 532
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 171/329 (51%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 323
Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 324 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 383
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRK 319
+TD L HL + LE LNL SC I D G+ LT G + + S+++SF ISD +L
Sbjct: 384 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTH 443
Query: 320 LA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLR 375
+A GL L+SL+L+ QITD G+ + +L L +L++ +RITD G L + NL+
Sbjct: 444 IAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLK 503
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
++++ G L+ G+ I L L LNL
Sbjct: 504 TIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 161/317 (50%), Gaps = 33/317 (10%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 291
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 292 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG------IGHLA----GFSRET 341
Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAG 322
E G LE L L C + DE L ++ GLT+L+SINLSF ++D L+ LA
Sbjct: 342 AE------GNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLAR 395
Query: 323 LSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLE 378
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 396 MPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLS 455
Query: 379 ICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITS 435
+ +TD G+ I K L L LN+ Q +TDK L+ L LT L ++++ ++++S
Sbjct: 456 LNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSS 515
Query: 436 AGLRHLKPLKNLRSLTL 452
G+ + L L+ L L
Sbjct: 516 KGIDIIMKLPKLQKLNL 532
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 127/274 (46%), Gaps = 60/274 (21%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
G+ LT LNL GC A ++ LG F ++L +LK L+L
Sbjct: 232 GVPALTSLNLSGC-FNVADMN----LGHAFSVDL----------------PNLKTLDLSL 270
Query: 262 -NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINL-SFTGISDGS 316
+ITD L + + L NLE+L L C I + GL+ + GL L+ +NL S ISD
Sbjct: 271 CKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG 330
Query: 317 LRKLAGLS--------SLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
+ LAG S L+ L L D ++++D L + GLT L
Sbjct: 331 IGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQ--GLTSLKSI----------- 377
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSL 426
+L C +TD+G+KH+ + L LNL N++D + L G +G+ SL
Sbjct: 378 --------NLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSL 428
Query: 427 NVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 429 DVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 462
>gi|209154948|gb|ACI33706.1| F-box/LRR-repeat protein 14 [Salmo salar]
Length = 400
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 180/378 (47%), Gaps = 61/378 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCR- 180
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+SD G IG L + E G
Sbjct: 181 ----------------------HVSDVG------IGHLAGMTRSAAE----------GCL 202
Query: 277 NLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA 333
NLE L L C + D L +++ GL L +NLSF G ISD + L+ ++SL SLNL +
Sbjct: 203 NLEYLTLQDCQKLTDLSLKHISKGLAKLRVLNLSFCGGISDAGMIHLSHMTSLWSLNLRS 262
Query: 334 -RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 389
I+DTG+ L T L+ LD+ F +I D AY+ + L+SL +C ++D G+
Sbjct: 263 CDNISDTGIMHLAMGTLRLSGLDMSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGI 322
Query: 390 -KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKN 446
+ ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL + L
Sbjct: 323 NRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPC 382
Query: 447 LRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 383 LKVLNLGLWQMTESEKVR 400
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 143/285 (50%), Gaps = 33/285 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G +NL L L+ C ++ L ++ KGL KL
Sbjct: 190 LAGMTR-----------------SAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLAKLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDMSFCDKI 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 350
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISD 314
+ LT L ++L C I GL +T L L+ +NL +++
Sbjct: 351 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 395
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 128/247 (51%), Gaps = 30/247 (12%)
Query: 233 LNLNRCQ-LSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG 287
LNL+ C L+D+G +I SL+VLNL +ITD L + + L NLE L L C
Sbjct: 95 LNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCS 154
Query: 288 -IGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGL 341
I + GL+ + GL L+S+NL S +SD + LAG++ + LNL+ + D
Sbjct: 155 NITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTLQDC-- 212
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
LT L+ L H+ G A LR +L CGG ++DAG+ H+ ++SL L
Sbjct: 213 QKLTDLS-LKHIS--------KGLAKLRVL----NLSFCGG-ISDAGMIHLSHMTSLWSL 258
Query: 402 NLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
NL N++D + L G L L++S +I L ++ + L L+SL+L SC ++
Sbjct: 259 NLRSCDNISDTGIMHLAMGTLRLSGLDMSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHIS 318
Query: 459 ANDIKRL 465
+ I R+
Sbjct: 319 DDGINRM 325
>gi|449464060|ref|XP_004149747.1| PREDICTED: uncharacterized protein LOC101203036 [Cucumis sativus]
gi|449505065|ref|XP_004162366.1| PREDICTED: uncharacterized protein LOC101225004 [Cucumis sativus]
Length = 586
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 98/404 (24%), Positives = 174/404 (43%), Gaps = 67/404 (16%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
NA+ ++ M L L++ C R+ G+ + G+ L LN+ C +TD+ ++
Sbjct: 71 ENAVDSEWMAYLGSFRYLQSLNVSNCHRLSSSGVWTISGMTTLRELNVSRCLKVTDAGIR 130
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L + L+ L I+ + +T G+ L L+ L L+L G PVT L SL L L YL+
Sbjct: 131 HLLSIPTLEKLCIAETGITAHGVTLLSSLKTLVFLDLGGLPVTDQALSSLQVLTKLQYLD 190
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-------G 287
L ++S+ G + L LN+ + +T L +LE LN+ +C G
Sbjct: 191 LWGSKISNSGSDVLQMFPKLSFLNIAWTSVTK-----FPNLPHLECLNMSNCIIDSTLKG 245
Query: 288 IG--------------------DEGLVNLTGLTNL-------------------ESINLS 308
+G D G V + L L E ++LS
Sbjct: 246 LGAKVPPRKLIASGATFSNETEDLGFVAMDALYYLDFSNASLHRFCFLSRMKAVEHLDLS 305
Query: 309 FTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAA 366
T I D S+ +A + +LK LNL ++ +G+ +L ++ L L L + D +
Sbjct: 306 STTIGDSSVELIASVGENLKYLNLSCTAVSSSGIGSLAGKVSNLETLSLSHTMVDDVALS 365
Query: 367 YLRNFKNLRSLEICGGGL-------TDAGVK-----HIKDLSSLTLLNLSQNCNLTDKTL 414
Y+ +L+ +++ + VK +++L L +LNL ++ ++ D++L
Sbjct: 366 YMNMMPSLKCIDLSETDIKGYIHLSAPETVKVFSLTELQNLDCLEMLNL-EHTHVDDESL 424
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+S L L + + T L +L L NL++L++ +T
Sbjct: 425 RPLSRFRKLSHLMLRSPSFTDTVLSYLSILPNLKTLSIRDAVLT 468
>gi|72385469|ref|XP_846402.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|9366571|emb|CAB95333.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1448
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 142/503 (28%), Positives = 216/503 (42%), Gaps = 70/503 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L +N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 610 ALNELNLSNCIRINAGWEAIEKLQ--QLHVAILSNTHITDRDISHFSKCKNLVTLDLSFC 667
Query: 92 IQISD-------GGLEHL---------RGLSNLTSLSFRRNNAITAQGMKAFAGLI---- 131
++ D LE L +GLS L L R + +G++ +I
Sbjct: 668 NKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELP--RLCVLNIKGVQLEDSVIGSLG 725
Query: 132 ---NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ V+L LE C + GG+ L L+ LE LN+ +C+ +T S M L L L+ L +
Sbjct: 726 NGNSFVRLSLENC-KGFGGVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVLDLG 783
Query: 189 CSKVTD------------------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
++V D + I+ + L L LN++ C + +
Sbjct: 784 RTQVDDNSLENICTCSSPLVSLNLSHCKKITSISAIASLTALEELNIDNCCNVTSGWNVF 843
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
L L L+ +++D+ + S+ SL LNL F +ITD + L +T LE LNL
Sbjct: 844 GTLHQLRVATLSNTRINDENIQHVSECKSLNTLNLAFCKDITD--VTALSTITMLEELNL 901
Query: 284 DSCGIGDEGLVNLTGLTNLESINLS--FTGISDGSLRKLAGLS-SLKSLNLDARQITDTG 340
D C +G+ L L + +++ + G SD + G S SL LNL+ R +
Sbjct: 902 DCCHNIRKGIETLGKLPKVRILSMKECYMGDSDAQQCSILGNSKSLVKLNLE-RSMGFIS 960
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNF---KNLRSLEICGGGLTDAGVKHIKDLSS 397
+ AL+++ L L L G + +F LR L + + D K+I + S
Sbjct: 961 VKALSNIATLEELVLDSV----CGIYDVLSFSCLPRLRVLNLKYTDINDDVTKNISESKS 1016
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L LNLS +TD + ++S L+ L LNV+ G L L LR L +
Sbjct: 1017 LQSLNLSHCKWVTD--ISVLSSLSTLEELNVNFCNGIRKGWESLGKLPLLRVAILSDTNI 1074
Query: 458 TANDIKRLQS-RDLPNLVSFRPE 479
TA DI L S + L L FR E
Sbjct: 1075 TAKDIACLSSCKKLVKLQFFRCE 1097
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 137/476 (28%), Positives = 212/476 (44%), Gaps = 68/476 (14%)
Query: 18 RCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSV-DLSGSDVTDSGLI 75
R + +S++A + A L++L L G+ DV++ L V +L +D+ D
Sbjct: 954 RSMGFISVKALSNIATLEELVLDSVCGI----YDVLSFSCLPRLRVLNLKYTDINDDVTK 1009
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
++ + +LQSL+ + C ++D +S L+SLS L +
Sbjct: 1010 NISESKSLQSLNLSHCKWVTD--------ISVLSSLS-------------------TLEE 1042
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTD 194
L++ C I G +L G + L + I IT D+ LS L LQ C K++D
Sbjct: 1043 LNVNFCNGIRKGWESL-GKLPLLRVAILSDTNITAKDIACLSSCKKLVKLQFFRCEKLSD 1101
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
+ Y +Q L L + L++L L L +L+L + SD E SL
Sbjct: 1102 VTVVY--EIQSLEELIVRKYSDGLKGLNALGTLSRLRFLHLRNARGSDISVESIGTSKSL 1159
Query: 255 KVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
LN+ E+TD L +T+LE L+L CG EG L L L S++L + IS
Sbjct: 1160 VRLNIETREELTDA--TPLSNITSLEELSLRDCGDTLEGAWTLGKLPRLRSLDLGLSDIS 1217
Query: 314 DGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
D +L ++ + SLNL ++TD ++++++LT L L+L G SG L
Sbjct: 1218 DNTLDEICLSRFITSLNLRYNFKLTD--ISSISNLTALEELNLSGCHRITSGWEALSELP 1275
Query: 373 NLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTD-------KTL---------E 415
LR L + +T G +I SL LNL ++C++TD KTL E
Sbjct: 1276 RLRVLNLESTSVTTRDGGYYISRCKSLVTLNL-ESCDMTDASCLANIKTLEELHIGECDE 1334
Query: 416 LISGLTGLVS------LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
L G + L + LN+ +S IT LR ++P + L L CK NDI L
Sbjct: 1335 LTQGFSALFTLPRLRILNLMDSLITDEDLREIQPPHTIEELNLSYCK-NLNDITPL 1389
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 165/373 (44%), Gaps = 20/373 (5%)
Query: 100 EHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
E LR L + T +S ++ + + L L +L+L C RI+ G ++ L +L
Sbjct: 577 ESLRSLCLSQTVVSLNLSHCWKMTNVSHISSLEALNELNLSNCIRINAGWEAIEKLQQLH 636
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+ I ITD D+ S NL +L +S C+K+ D + L + L LNL+ C
Sbjct: 637 -VAILSNTHITDRDISHFSKCKNLVTLDLSFCNKLLD--VTTLSNITTLEELNLDSCSNI 693
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL----GFNEITDECLVHLK 273
L L L L LN+ QL D S L+L GF +T L
Sbjct: 694 RKGLSVLGELPRLCVLNIKGVQLEDSVIGSLGNGNSFVRLSLENCKGFGGVTP-----LS 748
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNLD 332
L LE LNL C G+ L L L ++L T + D SL + SS L SLNL
Sbjct: 749 NLVTLEELNLHYCDKVTSGMGTLGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLS 808
Query: 333 -ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
++IT ++A+ SLT L L++ SG LR + + D ++H
Sbjct: 809 HCKKIT--SISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENIQH 866
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+ + SL LNL+ ++TD T +S +T L LN+ G+ L L +R L+
Sbjct: 867 VSECKSLNTLNLAFCKDITDVT--ALSTITMLEELNLDCCHNIRKGIETLGKLPKVRILS 924
Query: 452 LESCKVTANDIKR 464
++ C + +D ++
Sbjct: 925 MKECYMGDSDAQQ 937
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 110/428 (25%), Positives = 184/428 (42%), Gaps = 62/428 (14%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++L+ +++ DS + + C L L + C ++D + L+ L L+
Sbjct: 276 SRLTNLKCLELNSTNIDDSCVEEISACVKLSKLSVSECNNVTDAT--PISQLAALEELNL 333
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N +G+ L+ L LDL L +L LE LNI +C I +D+
Sbjct: 334 --SNCHITKGIGTLGMLLRLRILDLSGVPVEDNCLKDLCDCGSLERLNISYC--IQLTDI 389
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
PLS T ++ L ++ C ++T GI + L +L +L+++ ++ LDS+ G L
Sbjct: 390 NPLSNATAIEELNLNGCRRIT-RGIGVVWALPRLRILHMKDVHLSEPSLDSVGTGGLLVK 448
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-----G 287
++L+ C GF ++T L + LE LN+ C G
Sbjct: 449 VSLDNCA--------------------GFGDMT-----LLSSIVTLEELNIQKCADIISG 483
Query: 288 IGDEGLVNLTGLTNLESINL--------------------SFTGISDGSLRKLAGLSSLK 327
+G G + + N++ +++ SFTG+S+ + LA + +L+
Sbjct: 484 VGCLGTLPYLRVLNVKEVHISSLDFIGIGASKSLLQLTLESFTGLSN--VEALANILTLE 541
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L+L D G+ L +L L LDL G + L + + SL +
Sbjct: 542 KLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNL-SHCWKMT 600
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
V HI L +L LNLS NC + E I L L +SN+ IT + H KNL
Sbjct: 601 NVSHISSLEALNELNLS-NCIRINAGWEAIEKLQQLHVAILSNTHITDRDISHFSKCKNL 659
Query: 448 RSLTLESC 455
+L L C
Sbjct: 660 VTLDLSFC 667
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 110/421 (26%), Positives = 181/421 (42%), Gaps = 60/421 (14%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL L+L + +
Sbjct: 244 IDNNDARHLFSVGTLEELAITDTMQLT--NIREISRLTNLKCLELNSTNIDDSCVEEISA 301
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+KL L++ CN +TD+ P+S L L+ L +S +T GI L L +L +L+L G
Sbjct: 302 CVKLSKLSVSECNNVTDA--TPISQLAALEELNLSNCHIT-KGIGTLGMLLRLRILDLSG 358
Query: 214 CPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------- 250
PV CL L GSL LN++ C QL+D +GC + ++
Sbjct: 359 VPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIGVVWA 418
Query: 251 IGSLKVLNLGFNEITDECL--VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINL 307
+ L++L++ +++ L V GL L ++LD+C G GD L L+ + LE +N+
Sbjct: 419 LPRLRILHMKDVHLSEPSLDSVGTGGL--LVKVSLDNCAGFGDMTL--LSSIVTLEELNI 474
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITD--------------------TGLA---AL 344
+ L L L+ LN+ I+ TGL+ AL
Sbjct: 475 QKCADIISGVGCLGTLPYLRVLNVKEVHISSLDFIGIGASKSLLQLTLESFTGLSNVEAL 534
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
++ L L L G D+G L N L+ L++ G + ++ + ++ LNLS
Sbjct: 535 ANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLS 594
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+T+ + IS L L LN+SN +AG ++ L+ L L + +T DI
Sbjct: 595 HCWKMTN--VSHISSLEALNELNLSNCIRINAGWEAIEKLQQLHVAILSNTHITDRDISH 652
Query: 465 L 465
Sbjct: 653 F 653
>gi|215769345|dbj|BAH01574.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 178/390 (45%), Gaps = 20/390 (5%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+ LD + C +ISD G++H+ + +L L + +T G+ A + LINL LDL
Sbjct: 4 LKELDLSRCSKISDAGIKHIASIESLEKLHVSQT-GLTDNGVMAISSLINLRLLDLGGVR 62
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
L +L+ L +LE L+I W + IT+ L T+L L IS ++VT L
Sbjct: 63 FTDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNISWTRVT-----CLPI 116
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L L LN+ C + + C L L L ++ + E FS I + L +
Sbjct: 117 LPTLRCLNMSNCTIHSICNGEFQVLIHLEKLIISAASFGNID-EVFSSILPSSLTYLDMS 175
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-TNLESINLSFTGISDGSLRKLA 321
+ L L + NLE L+L I + + + + NL+ ++LS + ++ +L LA
Sbjct: 176 SCSSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLA 235
Query: 322 G-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-----GARITDS----GAAYLRNF 371
G + SL +L+L +I D+ L ++ + L L+L G + +S + L
Sbjct: 236 GTVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEEL 295
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
K L SL + L D + + L +L L L + L+D L +S + L+ L +
Sbjct: 296 KYLESLNLNNTQLMDDVIPPLASLRALKYLFLKSDF-LSDPALHALSSASNLIHLGFCGN 354
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+++ GLR P LR L L C + D
Sbjct: 355 ILSTTGLRKFVPPATLRMLDLSGCWILTGD 384
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 7/136 (5%)
Query: 275 LTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L+ L+L C I D G+ ++ + +LE +++S TG++D + ++ L +L+ L+L
Sbjct: 1 MRTLKELDLSRCSKISDAGIKHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGG 60
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+ TD L +L LT L HLD++G+ IT+ GA+ L F +L L I +T +
Sbjct: 61 VRFTDKALRSLQVLTQLEHLDIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPI---- 116
Query: 394 DLSSLTLLNLSQNCNL 409
L +L LN+S NC +
Sbjct: 117 -LPTLRCLNMS-NCTI 130
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 117/230 (50%), Gaps = 25/230 (10%)
Query: 253 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
+LK L+L ++I+D + H+ + +LE L++ G+ D G++ ++ L NL ++L
Sbjct: 3 TLKELDLSRCSKISDAGIKHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVR 62
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLR- 369
+D +LR L L+ L+ L++ +IT+ G + L + T L+ L++ R+T LR
Sbjct: 63 FTDKALRSLQVLTQLEHLDIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPILPTLRC 122
Query: 370 -NFKNLRSLEICGGG-----------LTDAGVKHIKDL------SSLTLLNLSQNCNLTD 411
N N IC G ++ A +I ++ SSLT L++S +C +
Sbjct: 123 LNMSNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILPSSLTYLDMS-SC--SS 179
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPL-KNLRSLTLESCKVTAN 460
L + + L L++S SRI S + ++ + NL+ L+L + +VT+
Sbjct: 180 SNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQ 229
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 161/380 (42%), Gaps = 55/380 (14%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L + ++D + IAS SL + +S + +TD+G++ + NL+ LD +
Sbjct: 4 LKELDLSRCSKISDAGIKHIASI-ESLEKLHVSQTGLTDNGVMAISSLINLRLLDLG-GV 61
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE------------- 139
+ +D L L+ L+ L L + IT +G +L L++
Sbjct: 62 RFTDKALRSLQVLTQLEHLDIW-GSEITNEGASVLIAFTSLSFLNISWTRVTCLPILPTL 120
Query: 140 RCTRIHGGLVN------LKGLMKLESLNIKWCN----------------------CITDS 171
RC + ++ + L+ LE L I + + S
Sbjct: 121 RCLNMSNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILPSSLTYLDMSSCSSS 180
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLS-ALGS 229
++ L + NL+ L +S S++ I Y+ + L L+L VT+ L L+ + S
Sbjct: 181 NLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAGTVPS 240
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNL------GF---NEITDECLVHLKGLTNLES 280
L L+L ++ D S + SL++LNL GF N + L L+ L LES
Sbjct: 241 LTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELKYLES 300
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
LNL++ + D+ + L L L+ + L +SD +L L+ S+L L ++ TG
Sbjct: 301 LNLNNTQLMDDVIPPLASLRALKYLFLKSDFLSDPALHALSSASNLIHLGFCGNILSTTG 360
Query: 341 LAALTSLTGLTHLDLFGARI 360
L L LDL G I
Sbjct: 361 LRKFVPPATLRMLDLSGCWI 380
>gi|195346821|ref|XP_002039953.1| GM15616 [Drosophila sechellia]
gi|194135302|gb|EDW56818.1| GM15616 [Drosophila sechellia]
Length = 538
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 190/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 300
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 301 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 360
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 361 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 413
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 414 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 458
Query: 286 CGIGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGL 341
C I D G++ + L LE++N+ + I+D L+ LA L++LK+++L Q++ G+
Sbjct: 459 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518
Query: 342 AALTSLTGLTHLDL 355
+ L L L+L
Sbjct: 519 DIIMKLPKLQKLNL 532
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 171/329 (51%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 323
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 324 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 383
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRK 319
+TD L HL + LE LNL SC I D G+ LT G + + S+++SF ISD +L
Sbjct: 384 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTH 443
Query: 320 LA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLR 375
+A GL L+SL+L+ QITD G+ + +L L +L++ +RITD G L + NL+
Sbjct: 444 IAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLK 503
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
++++ G L+ G+ I L L LNL
Sbjct: 504 TIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 161/317 (50%), Gaps = 33/317 (10%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 291
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 292 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG------IGHLA----GFSRET 341
Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAG 322
E G LE L L C + DE L ++ GLT+L+SINLSF ++D L+ LA
Sbjct: 342 AE------GNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLAR 395
Query: 323 LSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLE 378
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 396 MPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLS 455
Query: 379 ICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITS 435
+ +TD G+ I K L L LN+ Q +TDK L+ L LT L ++++ ++++S
Sbjct: 456 LNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSS 515
Query: 436 AGLRHLKPLKNLRSLTL 452
G+ + L L+ L L
Sbjct: 516 KGIDIIMKLPKLQKLNL 532
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 132/279 (47%), Gaps = 56/279 (20%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
G+ LT LNL GC A ++ LG F ++L +LK L+L
Sbjct: 232 GVPALTSLNLSGC-FNVADMN----LGHAFSVDLP----------------NLKTLDLSL 270
Query: 262 -NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINL-SFTGISDGS 316
+ITD L + + L NLE+L L C I + GL+ + GL L+ +NL S ISD
Sbjct: 271 CKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG 330
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYL-RNF 371
+ LAG S R+ + L L+ G R++D ++ +
Sbjct: 331 IGHLAGFS---------RETAEGNL----------QLEYLGLQDCQRLSDEALGHIAQGL 371
Query: 372 KNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNV 428
+L+S L C +TD+G+KH+ + L LNL N++D + L G +G+ SL+V
Sbjct: 372 TSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 430
Query: 429 SN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
S +I+ L H+ + L LRSL+L C++T + + ++
Sbjct: 431 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKI 469
>gi|195487977|ref|XP_002092120.1| GE11843 [Drosophila yakuba]
gi|194178221|gb|EDW91832.1| GE11843 [Drosophila yakuba]
Length = 533
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 190/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 197 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 238
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 239 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 295
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 296 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 355
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 356 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 408
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 409 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 453
Query: 286 CGIGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGL 341
C I D G++ + L LE++N+ + I+D L+ LA L++LK+++L Q++ G+
Sbjct: 454 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 513
Query: 342 AALTSLTGLTHLDL 355
+ L L L+L
Sbjct: 514 DIIMKLPKLQKLNL 527
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 171/329 (51%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 207 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 258
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 259 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 318
Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 319 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 378
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRK 319
+TD L HL + LE LNL SC I D G+ LT G + + S+++SF ISD +L
Sbjct: 379 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTH 438
Query: 320 LA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLR 375
+A GL L+SL+L+ QITD G+ + +L L +L++ +RITD G L + NL+
Sbjct: 439 IAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLK 498
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
++++ G L+ G+ I L L LNL
Sbjct: 499 TIDLYGCTQLSSKGIDIIMKLPKLQKLNL 527
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 161/317 (50%), Gaps = 33/317 (10%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 227 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 286
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 287 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG------IGHLA----GFSRET 336
Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAG 322
E G LE L L C + DE L ++ GLT+L+SINLSF ++D L+ LA
Sbjct: 337 AE------GNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLAR 390
Query: 323 LSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLE 378
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 391 MPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLS 450
Query: 379 ICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITS 435
+ +TD G+ I K L L LN+ Q +TDK L+ L LT L ++++ ++++S
Sbjct: 451 LNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSS 510
Query: 436 AGLRHLKPLKNLRSLTL 452
G+ + L L+ L L
Sbjct: 511 KGIDIIMKLPKLQKLNL 527
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 132/279 (47%), Gaps = 56/279 (20%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
G+ LT LNL GC A ++ LG F ++L +LK L+L
Sbjct: 227 GVPALTSLNLSGC-FNVADMN----LGHAFSVDL----------------PNLKTLDLSL 265
Query: 262 -NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINL-SFTGISDGS 316
+ITD L + + L NLE+L L C I + GL+ + GL L+ +NL S ISD
Sbjct: 266 CKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG 325
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYL-RNF 371
+ LAG S R+ + L L+ G R++D ++ +
Sbjct: 326 IGHLAGFS---------RETAEGNL----------QLEYLGLQDCQRLSDEALGHIAQGL 366
Query: 372 KNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNV 428
+L+S L C +TD+G+KH+ + L LNL N++D + L G +G+ SL+V
Sbjct: 367 TSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 425
Query: 429 SN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
S +I+ L H+ + L LRSL+L C++T + + ++
Sbjct: 426 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKI 464
>gi|432942786|ref|XP_004083072.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryzias latipes]
Length = 400
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 182/379 (48%), Gaps = 63/379 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEMLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCR- 180
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+SD G IG L + E G
Sbjct: 181 ----------------------HVSDVG------IGHLAGMTRSAAE----------GCL 202
Query: 277 NLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA 333
NLE L L C + D L +++ GLT L +NLSF G ISD + L+ + SL SLNL +
Sbjct: 203 NLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGISDAGMIHLSHMGSLWSLNLRS 262
Query: 334 -RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 388
I+DTG A+ SL L+ LD+ F +I D AY+ + L+SL +C ++D G
Sbjct: 263 CDNISDTGTMHLAMGSLR-LSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDG 321
Query: 389 V-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLK 445
+ + ++ + L LN+ Q +TDK LELI+ LT LV +++ ++IT GL + L
Sbjct: 322 INRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLP 381
Query: 446 NLRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 382 CLKVLNLGLWQMTESEKVR 400
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 168/322 (52%), Gaps = 48/322 (14%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
N++SL+ + C ++D GL H ++ + +L L+ IT + A + NL L+L
Sbjct: 91 NIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEMLEL 150
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQIS 188
C+ I G L+ GL +L+SLN++ C ++D + L+G+T NL+ L +
Sbjct: 151 GGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTLQ 210
Query: 189 -CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
C K+TD + ++ KGL KL +LNL C ++ A + LS +GSL+ LNL C +SD G
Sbjct: 211 DCQKLTDLSLKHISKGLTKLRVLNLSFCGGISDAGMIHLSHMGSLWSLNLRSCDNISDTG 270
Query: 245 CEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLT 300
+ +GSL++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G
Sbjct: 271 TMHLA-MGSLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDG-------- 321
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG- 357
IN R + + L++LN+ +ITD GL + LT L +DL+G
Sbjct: 322 ----IN-----------RMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLYGC 366
Query: 358 ARITDSGAAYLRNFKNLRSLEI 379
+IT G + L+ L +
Sbjct: 367 TKITKRGLERITQLPCLKVLNL 388
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 112/214 (52%), Gaps = 16/214 (7%)
Query: 69 VTDSGLIHL--------KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
V+D G+ HL + C NL+ L C +++D L+H+ +GL+ L L+ I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGI 241
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ GM + + +L L+L C I G + G ++L L++ +C+ I D + ++
Sbjct: 242 SDAGMIHLSHMGSLWSLNLRSCDNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIA 301
Query: 178 -GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYL 233
GL LKSL + ++D GI ++ + +L LN+ C +T L+ ++ L L +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGI 361
Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+L C +++ G E+ +++ LKVLNLG ++T+
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 395
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 129/253 (50%), Gaps = 42/253 (16%)
Query: 233 LNLNRCQ-LSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG 287
LNL+ C L+D+G +I SL+VLNL +ITD L + + L NLE L L C
Sbjct: 95 LNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEMLELGGCS 154
Query: 288 -IGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLAGLS--------SLKSLNL-DARQ 335
I + GL+ + GL L+S+NL S +SD + LAG++ +L+ L L D ++
Sbjct: 155 NITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQK 214
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+TD L ++ GLT L + +L CGG ++DAG+ H+ +
Sbjct: 215 LTDLSLKHISK--GLTKLRVL-------------------NLSFCGG-ISDAGMIHLSHM 252
Query: 396 SSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTL 452
SL LNL N++D T+ L G L L+VS +I L ++ + L L+SL+L
Sbjct: 253 GSLWSLNLRSCDNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSL 312
Query: 453 ESCKVTANDIKRL 465
SC ++ + I R+
Sbjct: 313 CSCHISDDGINRM 325
>gi|195121256|ref|XP_002005136.1| GI19235 [Drosophila mojavensis]
gi|193910204|gb|EDW09071.1| GI19235 [Drosophila mojavensis]
Length = 545
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 111/329 (33%), Positives = 173/329 (52%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L H V+L L
Sbjct: 219 RGIKKVQILSLRRSLKDLVVGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 270
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 271 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 330
Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 331 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 390
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRK 319
+TD L HL + LE LNL SC I D G+ LT G + + S+++SF ISD +L
Sbjct: 391 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTH 450
Query: 320 LA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLR 375
+A GL L+SL+L+ QITD G+ + SL L +L++ +RITD G L + NL+
Sbjct: 451 IAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLK 510
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
++++ G L+ G+ I L L LNL
Sbjct: 511 TIDLYGCTQLSSKGIDIIMKLPKLQKLNL 539
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 190/371 (51%), Gaps = 62/371 (16%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL +G +L S++LSG
Sbjct: 209 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVVGV----------------PALTSLNLSG 250
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQ 122
+V D L H D NL++LD + C QI+D L + + L NL +L IT
Sbjct: 251 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 310
Query: 123 GMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCITDSD 172
G+ A GL L L+L C I G+ +L G ++LE L ++ C ++D
Sbjct: 311 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 370
Query: 173 MKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +G
Sbjct: 371 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDIGMA 423
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
+ L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+ C I
Sbjct: 424 Y--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQCQI 468
Query: 289 GDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAAL 344
D+G++ + L LE++N+ + I+D L+ LA LS+LK+++L Q++ G+ +
Sbjct: 469 TDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDII 528
Query: 345 TSLTGLTHLDL 355
L L L+L
Sbjct: 529 MKLPKLQKLNL 539
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 161/317 (50%), Gaps = 33/317 (10%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 239 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLET 298
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 299 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 348
Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAG 322
E G LE L L C + DE L ++ GLT+L+SINLSF ++D L+ LA
Sbjct: 349 AE------GNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLAR 402
Query: 323 LSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLE 378
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 403 MPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLS 462
Query: 379 ICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITS 435
+ +TD G+ I K L L LN+ Q +TDK L+ L L+ L ++++ ++++S
Sbjct: 463 LNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSS 522
Query: 436 AGLRHLKPLKNLRSLTL 452
G+ + L L+ L L
Sbjct: 523 KGIDIIMKLPKLQKLNL 539
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 126/274 (45%), Gaps = 60/274 (21%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
G+ LT LNL GC A ++ LG F ++L +LK L+L
Sbjct: 239 GVPALTSLNLSGC-FNVADMN----LGHAFSVDL----------------PNLKTLDLSL 277
Query: 262 -NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINL-SFTGISDGS 316
+ITD L + + L NLE+L L C I + GL+ + GL L +NL S ISD
Sbjct: 278 CKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG 337
Query: 317 LRKLAGLS--------SLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
+ LAG S L+ L L D ++++D L + GLT L
Sbjct: 338 IGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQ--GLTSLKSI----------- 384
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSL 426
+L C +TD+G+KH+ + L LNL N++D + L G +G+ SL
Sbjct: 385 --------NLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSL 435
Query: 427 NVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 436 DVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 469
>gi|18568223|gb|AAL75966.1|AF467462_1 PpaB [Danio rerio]
Length = 392
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 177/357 (49%), Gaps = 55/357 (15%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + +LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 66 RGIRRVQTLSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 119
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 120 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 179
Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
V+ + L+ + SL YL L CQ L+D + SK + LKVLNL F I
Sbjct: 180 VSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGI 239
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFT-GISDGSLRKLA 321
+D ++HL +T+L SLNL SC I D G+++L G L +++SF I D SL +A
Sbjct: 240 SDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLACIA 299
Query: 322 -GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI- 379
GL LKSL+L + I+D G+ + +R LR+L I
Sbjct: 300 QGLYQLKSLSLCSCHISDDGINRM-----------------------VRQMHELRTLNIG 336
Query: 380 -CGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
C +TD G++ I D L+ LT ++L +T + LE I+ L L N+ ++T
Sbjct: 337 QC-VRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNLGLWQMT 392
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 140/278 (50%), Gaps = 33/278 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 128 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 187
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L L L+ C ++ L ++ KGL KL+
Sbjct: 188 LAGMTR-----------------SAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKV 230
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 231 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKI 290
Query: 218 A----ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
AC+ L L L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 291 GDQSLACIA--QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 348
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINL 307
+ LT L ++L C I GL +T L L+ NL
Sbjct: 349 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNL 386
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 128/253 (50%), Gaps = 42/253 (16%)
Query: 233 LNLNRCQ-LSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG 287
LNL+ C L+D+G +I SL+VLNL +ITD L + + L NLE L L C
Sbjct: 93 LNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCS 152
Query: 288 -IGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLAGLS--------SLKSLNL-DARQ 335
I + GL+ + GL L+S+NL S +SD + LAG++ SL+ L L D ++
Sbjct: 153 NITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQK 212
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+TD L ++ GLT L + +L CGG ++DAG+ H+ +
Sbjct: 213 LTDLSLKHISK--GLTKLKVL-------------------NLSFCGG-ISDAGMIHLSHM 250
Query: 396 SSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTL 452
+SL LNL N++D + L G L L+VS +I L + + L L+SL+L
Sbjct: 251 TSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLACIAQGLYQLKSLSL 310
Query: 453 ESCKVTANDIKRL 465
SC ++ + I R+
Sbjct: 311 CSCHISDDGINRM 323
>gi|157118403|ref|XP_001659098.1| F-Box protein, putative [Aedes aegypti]
gi|108875753|gb|EAT39978.1| AAEL008262-PA, partial [Aedes aegypti]
Length = 381
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 142/248 (57%), Gaps = 21/248 (8%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLT 207
+G+ K++ L C ITD + + + L NL++L +S C +VTDS + + + L+ +
Sbjct: 132 RGIKKVQILG---CYNITDISLGYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVE 188
Query: 208 LLNLEGCP--VTAACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF 261
+L L GC A L +A G +L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 189 ILELGGCSNITNTAGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLKSINLSF 248
Query: 262 -NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSL 317
+TD L HL +T LE LNL +C I D G+ LT G + + S+++SF I+D +L
Sbjct: 249 CVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQAL 308
Query: 318 RKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRN-FKN 373
++ GL LKSL+L A QITD GLA + SL L L++ AR+TD G YL + N
Sbjct: 309 THISQGLFHLKSLSLSACQITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYLADELNN 368
Query: 374 LRSLEICG 381
LR++++ G
Sbjct: 369 LRAIDLYG 376
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 123/235 (52%), Gaps = 29/235 (12%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGL----EHLR--------GLSNLTSLSFRRNNAIT 120
G + D NL++LD + C Q++D L +HL+ G SN+T+ + T
Sbjct: 151 GYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCSNITNTAGLSKE--T 208
Query: 121 AQGMKA--FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
A G A + GL + +L E I GL +LK S+N+ +C +TDS +K L+
Sbjct: 209 ADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLK------SINLSFCVSVTDSGLKHLAK 262
Query: 179 LTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLN 234
+T L+ L + +C ++D G+AYL +G + L++ C + L +S L L L+
Sbjct: 263 MTKLEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLS 322
Query: 235 LNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLKG-LTNLESLNLDSC 286
L+ CQ++D+G K +K + L+ LN+G +TD+ L +L L NL +++L C
Sbjct: 323 LSACQITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYLADELNNLRAIDLYGC 377
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++D L H+ + ++L+S++ +FC+ ++D GL+HL ++ L L+ R + I+ GM
Sbjct: 226 LSDEALRHIAQGLTSLKSINLSFCVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMAYL 285
Query: 128 A-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G ++ LD+ C +I L ++ +GL L+SL++ C + K L +L++
Sbjct: 286 TEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSLHDLET 345
Query: 185 LQI-SCSKVTDSGIAYLKG-LQKLTLLNLEGC 214
L I C++VTD G+ YL L L ++L GC
Sbjct: 346 LNIGQCARVTDKGLEYLADELNNLRAIDLYGC 377
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 14/187 (7%)
Query: 292 GLVNLTGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT 348
G V T L NL +++LS ++D SL ++A L +++ L L IT+T + +
Sbjct: 151 GYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCSNITNTAGLSKETAD 210
Query: 349 GLTHLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLL 401
G L+ G R++D ++ + +L+S L C +TD+G+KH+ ++ L L
Sbjct: 211 GTPALEYLGLQDCQRLSDEALRHIAQGLTSLKSINLSFCVS-VTDSGLKHLAKMTKLEEL 269
Query: 402 NLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
NL N++D + L G + ++SL+VS +I L H+ + L +L+SL+L +C++T
Sbjct: 270 NLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQIT 329
Query: 459 ANDIKRL 465
+ ++
Sbjct: 330 DEGLAKI 336
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNF 90
L++L L ++D M + GS+++S+D+S D + D L H+ + +L+SL +
Sbjct: 266 LEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSA 325
Query: 91 CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI 144
C QI+D GL + + L +L +L+ + +T +G++ A L NL +DL CTR+
Sbjct: 326 C-QITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYLADELNNLRAIDLYGCTRL 380
>gi|17647819|ref|NP_523812.1| partner of paired, isoform A [Drosophila melanogaster]
gi|194884489|ref|XP_001976275.1| GG20101 [Drosophila erecta]
gi|10441427|gb|AAG17034.1|AF187980_1 Partner of Paired [Drosophila melanogaster]
gi|7291460|gb|AAF46886.1| partner of paired, isoform A [Drosophila melanogaster]
gi|21430560|gb|AAM50958.1| RE01138p [Drosophila melanogaster]
gi|190659462|gb|EDV56675.1| GG20101 [Drosophila erecta]
gi|220947678|gb|ACL86382.1| CG9952-PA [synthetic construct]
gi|220957060|gb|ACL91073.1| ppa-PA [synthetic construct]
Length = 538
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 190/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 300
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 301 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 360
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 361 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 413
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 414 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 458
Query: 286 CGIGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGL 341
C I D G++ + L LE++N+ + I+D L+ LA L++LK+++L Q++ G+
Sbjct: 459 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518
Query: 342 AALTSLTGLTHLDL 355
+ L L L+L
Sbjct: 519 DIIMKLPKLQKLNL 532
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 171/329 (51%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 323
Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 324 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 383
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRK 319
+TD L HL + LE LNL SC I D G+ LT G + + S+++SF ISD +L
Sbjct: 384 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTH 443
Query: 320 LA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLR 375
+A GL L+SL+L+ QITD G+ + +L L +L++ +RITD G L + NL+
Sbjct: 444 IAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLK 503
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
++++ G L+ G+ I L L LNL
Sbjct: 504 TIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 161/317 (50%), Gaps = 33/317 (10%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 291
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 292 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG------IGHLA----GFSRET 341
Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAG 322
E G LE L L C + DE L ++ GLT+L+SINLSF ++D L+ LA
Sbjct: 342 AE------GNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLAR 395
Query: 323 LSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLE 378
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 396 MPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLS 455
Query: 379 ICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITS 435
+ +TD G+ I K L L LN+ Q +TDK L+ L LT L ++++ ++++S
Sbjct: 456 LNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSS 515
Query: 436 AGLRHLKPLKNLRSLTL 452
G+ + L L+ L L
Sbjct: 516 KGIDIIMKLPKLQKLNL 532
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 132/279 (47%), Gaps = 56/279 (20%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
G+ LT LNL GC A ++ LG F ++L +LK L+L
Sbjct: 232 GVPALTSLNLSGC-FNVADMN----LGHAFSVDL----------------PNLKTLDLSL 270
Query: 262 -NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINL-SFTGISDGS 316
+ITD L + + L NLE+L L C I + GL+ + GL L+ +NL S ISD
Sbjct: 271 CKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG 330
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYL-RNF 371
+ LAG S R+ + L L+ G R++D ++ +
Sbjct: 331 IGHLAGFS---------RETAEGNL----------QLEYLGLQDCQRLSDEALGHIAQGL 371
Query: 372 KNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNV 428
+L+S L C +TD+G+KH+ + L LNL N++D + L G +G+ SL+V
Sbjct: 372 TSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 430
Query: 429 SN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
S +I+ L H+ + L LRSL+L C++T + + ++
Sbjct: 431 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKI 469
>gi|361069065|gb|AEW08844.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137600|gb|AFG49921.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137602|gb|AFG49922.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137604|gb|AFG49923.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137606|gb|AFG49924.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137608|gb|AFG49925.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137610|gb|AFG49926.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137612|gb|AFG49927.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137614|gb|AFG49928.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137616|gb|AFG49929.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137618|gb|AFG49930.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137620|gb|AFG49931.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137622|gb|AFG49932.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137624|gb|AFG49933.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137626|gb|AFG49934.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137628|gb|AFG49935.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137630|gb|AFG49936.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137632|gb|AFG49937.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137634|gb|AFG49938.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
Length = 73
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
QN +LTD LE +SG+T LVSLNVSN+R+T+ GL+HL+PLKNL SL+L++CKVT +IK+
Sbjct: 1 QNSHLTDGALEFVSGMTALVSLNVSNTRVTNTGLQHLRPLKNLTSLSLQACKVTWPEIKK 60
Query: 465 LQSRDLPNLVSFR 477
LQ+ LPNL R
Sbjct: 61 LQA-TLPNLAGVR 72
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+TD ++ +SG+T L SL +S ++VT++G+ +L+ L+ LT L+L+ C VT + L A
Sbjct: 5 LTDGALEFVSGMTALVSLNVSNTRVTNTGLQHLRPLKNLTSLSLQACKVTWPEIKKLQA 63
>gi|125536975|gb|EAY83463.1| hypothetical protein OsI_38675 [Oryza sativa Indica Group]
Length = 702
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 141/519 (27%), Positives = 225/519 (43%), Gaps = 93/519 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS------------------------- 67
++ +CL + GV + +D + + L +VDLS
Sbjct: 104 VRRVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAATGLRELSLEKC 163
Query: 68 -DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLE-------HLRGLS----NLTSLSFR 114
VTD GL + C L+ L +C +ISD G++ LR L L L
Sbjct: 164 LGVTDMGLAKVVVGCPRLEKLSLKWCREISDIGIDLLSKKCHDLRSLDISYLKLLGLGMI 223
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV------------NLKGLMKLESLNI 162
+ T + +K V D+E GL ++ L KLE L +
Sbjct: 224 CGSTATNKAVKCDFDSSLWVDFDMENVQSSELGLTGWLILVGNESLRSISSLEKLEELAM 283
Query: 163 KWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIA---------------------- 198
C+CI D ++ L G +L+S+ +S C VT G+A
Sbjct: 284 VCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFLQKLNAADSLHEMR 343
Query: 199 --YLKGLQKL----TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKF-SK 250
+L L KL T+L L+G V ++ L ++ +L + L++C ++D+G ++
Sbjct: 344 QSFLSNLAKLKDTLTVLRLDGLEVASSVLLAIGGCNNLVEIGLSKCNGVTDEGISSLVTQ 403
Query: 251 IGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNL-TGLTNLESINL 307
L+V++L +C + + +E L L+SC I ++GL + T NL+ I+L
Sbjct: 404 CSHLRVIDLTCCNSLQQCPDSIAENCKMVERLRLESCSSISEKGLEQIATSCPNLKEIDL 463
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LTHLDLFGAR-ITDSG 364
+ G++D +LR LA S L L L I+D GLA ++S G L LDL+ ITD G
Sbjct: 464 TDCGVNDAALRPLAKCSELLVLKLGLCSSISDKGLAFISSSCGKLIELDLYRCNSITDDG 523
Query: 365 AAYLRN-FKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLT 421
A L N K ++ L +C +TD G+ H+ L LT L L +T + ++ G
Sbjct: 524 LAALANGCKKIKMLNLCYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCK 583
Query: 422 GLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 458
L+ +++ + AGL L NLR LT+ C+VT
Sbjct: 584 NLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVT 622
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 125/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
+++K ++ IA+ +L +DL+ V D+ L L CS L L C ISD GL +
Sbjct: 443 ISEKGLEQIATSCPNLKEIDLTDCGVNDAALRPLAKCSELLVLKLGLCSSISDKGLAFIS 502
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A A G K++ LN+
Sbjct: 503 SSCGKLIELDLYRCNSITDDGLAALA-----------------------NGCKKIKMLNL 539
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITD+ + L L L +L++ C ++T GI+ V C
Sbjct: 540 CYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGIS----------------SVAIGC- 582
Query: 222 DSLSALGSLFYLNLNRCQLSDD-GCEKFSKIG-SLKVLNLGFNEITDECLVHLKGLTNLE 279
+L ++L RC DD G ++ +L+ L + + ++T L HL L++L
Sbjct: 583 ------KNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 634
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L D +V+L+ ++ +E ++ G L+KL LS LKS+
Sbjct: 635 CLQ-------DVKMVHLSWVS-IEGFEMALRAAC-GRLKKLKMLSGLKSV 675
>gi|83592173|ref|YP_425925.1| hypothetical protein Rru_A0837 [Rhodospirillum rubrum ATCC 11170]
gi|386348881|ref|YP_006047129.1| hypothetical protein F11_04310 [Rhodospirillum rubrum F11]
gi|83575087|gb|ABC21638.1| Leucine-rich repeat [Rhodospirillum rubrum ATCC 11170]
gi|346717317|gb|AEO47332.1| leucine-rich repeat-containing protein [Rhodospirillum rubrum F11]
Length = 1085
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 116/352 (32%), Positives = 182/352 (51%), Gaps = 39/352 (11%)
Query: 98 GLEHL----RGLSNLTSLSF-----RRNNAITAQ---GMKAFAGLINLVKLDLERCTRIH 145
GLE + R L+ LT+L R + I+A+ + GL NL L L
Sbjct: 49 GLERIPDSIRELAELTALRLTCWDRARGSFISARLVTDLTPLTGLENLQGLFLSYTAVTD 108
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
L L G+ L+SL + +D+ PL+GL NL+S+ +S +++TD +A L GL+
Sbjct: 109 --LTPLTGIKSLQSLILSETQV---TDLTPLAGLKNLQSINLSATQITD--LAPLAGLEN 161
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L L VT L L+ L +L +L L ++ D + + SL+ L+L +T
Sbjct: 162 LQNLTLSYTTVTD--LAPLAGLENLQHLILLGTRVID--LTPLAGLKSLQSLDLSGTRVT 217
Query: 266 DECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS 324
+ + L GL +L+SL+L + D LV L L +L+S+NLS T ++D L LAGL
Sbjct: 218 N--IAPLVGLKSLQSLDLRRTRVTDIAPLVGLKSLKSLQSLNLSRTPVTD--LAPLAGLE 273
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
+L++L L +TD LA L L L ++DL G + D A L +NL+++++ G +
Sbjct: 274 NLQNLTLSYTTVTD--LAPLAGLENLQNIDLGGTEVID--LAPLAGLENLQNIDLGGTEV 329
Query: 385 TD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
D A + +++L +LTL +TD L ++GL L S++ S RITS
Sbjct: 330 IDLAPLAGLENLQNLTL----SYTTVTD--LAPLAGLENLQSIDCSGCRITS 375
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 161/305 (52%), Gaps = 30/305 (9%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D+ PL+GL NL+ L +S + VTD + L G++ L L L VT L L+ L +L
Sbjct: 85 TDLTPLTGLENLQGLFLSYTAVTD--LTPLTGIKSLQSLILSETQVTD--LTPLAGLKNL 140
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
+NL+ Q++D + + +L+ L L + +TD L L GL NL+ L L + D
Sbjct: 141 QSINLSATQITD--LAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQHLILLGTRVID 196
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTG 349
L L GL +L+S++LS T +++ + L GL SL+SL+L ++TD L L SL
Sbjct: 197 --LTPLAGLKSLQSLDLSGTRVTN--IAPLVGLKSLQSLDLRRTRVTDIAPLVGLKSLKS 252
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD----AGVKHIK----------DL 395
L L+L +TD A L +NL++L + +TD AG+++++ DL
Sbjct: 253 LQSLNLSRTPVTD--LAPLAGLENLQNLTLSYTTVTDLAPLAGLENLQNIDLGGTEVIDL 310
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSL-NVSNSRITSAGLRHLKPLKNLRSLTLES 454
+ L L QN +L + ++ L GL +L N++ S T L L L+NL+S+
Sbjct: 311 APLAGLENLQNIDLGGTEVIDLAPLAGLENLQNLTLSYTTVTDLAPLAGLENLQSIDCSG 370
Query: 455 CKVTA 459
C++T+
Sbjct: 371 CRITS 375
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 28/225 (12%)
Query: 58 SLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL S+DL + VTD + L+ LK +LQSL+ + ++D L L GL NL +L+
Sbjct: 227 SLQSLDLRRTRVTDIAPLVGLKSLKSLQSLNLSRT-PVTD--LAPLAGLENLQNLTL--- 280
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ T + AGL NL +DL I L L GL L+++++ I D+ PL
Sbjct: 281 SYTTVTDLAPLAGLENLQNIDLGGTEVID--LAPLAGLENLQNIDLGGTEVI---DLAPL 335
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+GL NL++L +S + VTD +A L GL+ L ++ GC +T+ D L +L ++ +
Sbjct: 336 AGLENLQNLTLSYTTVTD--LAPLAGLENLQSIDCSGCRITSVP-DGLFDSPALRWVICS 392
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLES 280
L+D E S+ G+ D CL H++ L +LE
Sbjct: 393 EGALADIPAEALSQGGA------------DNCLPHIRAHLRDLEQ 425
>gi|157865941|ref|XP_001681677.1| putative surface antigen protein [Leishmania major strain Friedlin]
gi|68124975|emb|CAJ02737.1| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 776
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 108/469 (23%), Positives = 209/469 (44%), Gaps = 27/469 (5%)
Query: 6 ISQQIF---NELVYSRCLTEVSLEA-FRDCALQDLCLGQYP----GVNDKWMDVIASQGS 57
+S +F N Y+ L E+ + +R ++DL P + D W SQ
Sbjct: 78 VSVNVFVGLNVSTYAGTLPEIPVNVDYRHVMIRDLGFWNMPLLSGTLPDSW-----SQLG 132
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRR- 115
LLSV LSG V+ + L+ L C ++ G L L L NL L R+
Sbjct: 133 GLLSVTLSGCGVSGTLPASWGLMVRLRELTVRDCRHLT-GSLPSLWSWLPNLQKLVLRQL 191
Query: 116 --NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSD 172
+ + A+ ++ + +L++L++ I G L + L +LN++
Sbjct: 192 QLSGTLPAE----WSRVTSLLELEIVAAGDITGTLPPEWSSIKSLRTLNLE--GTQVSGT 245
Query: 173 MKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ P S + +L +L++ ++V+ + ++ L LNLEG V+ + ++ SL
Sbjct: 246 LPPGWSEMKSLTNLELEGTQVSGTLPPGWSSIKSLRTLNLEGTQVSGSLPPEWVSMASLR 305
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
LNL Q+S +S++ SL L L +++ + +L +LNL+ +
Sbjct: 306 TLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGS 365
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
+ +L ++NL T +S + ++SL++LNL+ Q++ T + + LT
Sbjct: 366 LPPQWVSMASLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLT 425
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
L+L G +++ + K+LR+L + G ++ + ++SL LNL + ++
Sbjct: 426 SLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNL-EGTQVSG 484
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
S + L SL + ++++ +K+LR+L LE +V+ +
Sbjct: 485 TLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGS 533
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/412 (22%), Positives = 190/412 (46%), Gaps = 15/412 (3%)
Query: 54 SQGSSLLSVDL-SGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS---DGGLEHLRGLSNLT 109
S+ +SLL +++ + D+T + +L++L+ Q+S G ++ L+NL
Sbjct: 202 SRVTSLLELEIVAAGDITGTLPPEWSSIKSLRTLNLE-GTQVSGTLPPGWSEMKSLTNLE 260
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCI 168
++ ++ + +L L+LE T++ G L + L +LN++
Sbjct: 261 ----LEGTQVSGTLPPGWSSIKSLRTLNLE-GTQVSGSLPPEWVSMASLRTLNLE--GTQ 313
Query: 169 TDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ P S + +L SL++ ++V+ + ++ L LNLEG V+ + ++
Sbjct: 314 VSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPQWVSM 373
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
SL LNL Q+S ++ + SL+ LNL +++ + +L SL L+
Sbjct: 374 ASLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQ 433
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ + + +L ++NL T +S + ++SL++LNL+ Q++ T + +
Sbjct: 434 VSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEM 493
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
LT L+L G +++ + K+LR+L + G ++ + ++SL LNL +
Sbjct: 494 KSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNL-EGT 552
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
++ S + L SL + ++++ +K+LR+L LE +V+
Sbjct: 553 QVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSG 604
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/403 (22%), Positives = 186/403 (46%), Gaps = 6/403 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL +++L G+ V+ S ++L++L+ Q+S + +LTSL
Sbjct: 279 SLRTLNLEGTQVSGSLPPEWVSMASLRTLNLE-GTQVSGTLPPGWSEMKSLTSLELE-GT 336
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
++ ++ + +L L+LE T++ G L + L +LN++ ++ S
Sbjct: 337 QVSGTLPPRWSEMKSLRTLNLE-GTQVSGSLPPQWVSMASLRTLNLE-GTQVSGSLPPEW 394
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ +L++L + ++V+ + ++ LT L LEG V+ S + SL LNL
Sbjct: 395 VSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLE 454
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q+S ++ + SL+ LNL +++ + +L SL L+ +
Sbjct: 455 GTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRW 514
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ + +L ++NL T +S + ++SL++LNL+ Q++ T + + LT L+L
Sbjct: 515 SEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELE 574
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G +++ + K+LR+L + G ++ A ++ SLT L L + L+
Sbjct: 575 GTQVSGTLPPRWSEMKSLRTLNLEGTQVSGALPPGWGEMKSLTNLYL-EGTQLSGSLPTE 633
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
G+ L +L + ++++ + L +LR+L LE +V+
Sbjct: 634 WRGMKSLTNLYLEGTQVSGSLPPQWSSLTSLRTLDLEGTQVSG 676
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 141/329 (42%), Gaps = 24/329 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ SL S++L G+ V+ + + +L++L+ Q+S +++L +L+
Sbjct: 419 SEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLE-GTQVSGSLPPEWVSMASLRTLNL 477
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSD 172
++ ++ + +L L+LE T++ G L MK L +LN++ ++ S
Sbjct: 478 E-GTQVSGTLPPGWSEMKSLTSLELE-GTQVSGTLPPRWSEMKSLRTLNLE-GTQVSGSL 534
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ +L++L + ++V+ + ++ LT L LEG V+ S + SL
Sbjct: 535 PPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRT 594
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LNL Q+S + ++ SL L L +++ +G+ +L +L L+ +
Sbjct: 595 LNLEGTQVSGALPPGWGEMKSLTNLYLEGTQLSGSLPTEWRGMKSLTNLYLEGTQVSGSL 654
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ LT+L +++L T +S + + + S ++L L+ H
Sbjct: 655 PPQWSSLTSLRTLDLEGTQVSGRLPPEWSRMLSAENLQLE-------------------H 695
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICG 381
DL G+ + A LR CG
Sbjct: 696 CDLSGSLPPEWSAMPRLRLVGLRGNHFCG 724
>gi|395845616|ref|XP_003795523.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Otolemur
garnettii]
Length = 401
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 184/382 (48%), Gaps = 68/382 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 180 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 200
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 260
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 261 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 320 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 379
Query: 444 LKNLRSLTLESCKVTANDIKRL 465
L L+ L L ++T ++ KRL
Sbjct: 380 LPCLKVLNLGLWQMTDSE-KRL 400
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 175/335 (52%), Gaps = 48/335 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 325 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 361
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
DL+G RIT G + L+ L + +TD+
Sbjct: 362 DLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
>gi|126340111|ref|XP_001366661.1| PREDICTED: f-box/LRR-repeat protein 14-like [Monodelphis domestica]
Length = 400
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 182/381 (47%), Gaps = 67/381 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 180 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 200
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 260
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 261 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 320 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 379
Query: 444 LKNLRSLTLESCKVTANDIKR 464
L L+ L L ++T ++ R
Sbjct: 380 LPCLKVLNLGLWQMTESEKVR 400
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 171/327 (52%), Gaps = 48/327 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 325 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 361
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEI 379
DL+G RIT G + L+ L +
Sbjct: 362 DLYGCTRITKRGLERITQLPCLKVLNL 388
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++T+
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTE 395
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 44/263 (16%)
Query: 224 LSALGSLFYLNLNRC-QLSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
+ + ++ LNL+ C L+D+G +IGSL+ LNL +ITD L + + L L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQIT 337
E L L C N++ TG+ L GL LKSLNL + R ++
Sbjct: 146 EVLELGGCS------------------NITNTGL----LLIAWGLQRLKSLNLRSCRHLS 183
Query: 338 DTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLT 385
D G+ L +T GL L L ++TD ++ R LR +L CGG ++
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-IS 242
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-K 442
DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++ +
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
L L+SL+L SC ++ + I R+
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRM 325
>gi|291392871|ref|XP_002712822.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryctolagus cuniculus]
Length = 400
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 182/381 (47%), Gaps = 67/381 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 180 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 200
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 260
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 261 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 320 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 379
Query: 444 LKNLRSLTLESCKVTANDIKR 464
L L+ L L ++T ++ R
Sbjct: 380 LPCLKVLNLGLWQMTDSEKVR 400
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 180/351 (51%), Gaps = 72/351 (20%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++LSG ++TD+GL H +++ +L++L+ + C QI+D L +
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRI--------------- 138
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AQ +K L L+L C+ I G L+ GL +L++LN++ C ++D +
Sbjct: 139 ---AQYLKG------LEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSCRHLSDVGIGH 189
Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
L+G+T L+ L + C K+TD + ++ +GL L LLNL C ++ A L L
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 308
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITD 338
SL+L SC I D+G+ + +R++ G L++LN+ +ITD
Sbjct: 309 SLSLCSCHISDDGINRM--------------------VRQMHG---LRTLNIGQCVRITD 345
Query: 339 TGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
GL + L+ LT +DL+G RIT G + L+ L + +TD+
Sbjct: 346 KGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 127/266 (47%), Gaps = 43/266 (16%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA L ++L G S++T++GL+ + L++L+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSCRHLSDVGIGH 189
Query: 102 LRGLSN--------LTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNL 151
L G++ L L+ + +T +K + GL L L+L C I GL++L
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
+ L SLN++ C+ I+D+ + L+ G L L +S C KV D +AY+ +GL L
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKS 309
Query: 209 LNLEGCPVTAACLDSL-SALGSLFYLNLNRC---------------------------QL 240
L+L C ++ ++ + + L LN+ +C ++
Sbjct: 310 LSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRI 369
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITD 266
+ G E+ +++ LKVLNLG ++TD
Sbjct: 370 TKRGLERITQLPCLKVLNLGLWQMTD 395
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 44/263 (16%)
Query: 224 LSALGSLFYLNLNRC-QLSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
+ + ++ LNL+ C L+D+G +IGSL+ LNL +ITD L + + L L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQIT 337
E L L C N++ TG+ L GL LK+LNL + R ++
Sbjct: 146 EVLELGGCS------------------NITNTGL----LLIAWGLQRLKTLNLRSCRHLS 183
Query: 338 DTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLT 385
D G+ L +T GL L L ++TD ++ R LR +L CGG ++
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-IS 242
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-K 442
DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++ +
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
L L+SL+L SC ++ + I R+
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRM 325
>gi|51850107|dbj|BAD42395.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 538
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 156/336 (46%), Gaps = 16/336 (4%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQI 187
+L LDL RC G + G+ L L + N I + L+ L SL +
Sbjct: 145 SLKALDLSRCR----GPITAAGIAHLSRLPLVRLNVRNKRIGAEGARLLANHPTLTSLNV 200
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S ++ G L +LT LN+ G + A +L+A +L L+++ ++ D+G +
Sbjct: 201 SNGRIGPEGAQALAANTRLTTLNVSGNRIGVAGAKALAANQTLRSLDVSDNRIGDEGARE 260
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
+ L L+ N I + L L SL + IGD G++ L L ++N+
Sbjct: 261 LAACTQLTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNV 320
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
TG+ ++ LA +L L LD I + G AL + T LT L L +RI GA
Sbjct: 321 ESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQA 380
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSL 426
L L +L++ + DAGV+ + ++L L++ +N NL D + + L +G T L +L
Sbjct: 381 LAANTKLTTLDLGYNDIGDAGVRTLSANATLVWLSVRRN-NLEDASAVSLAAGKT-LTTL 438
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
++S + I G + L + TL + V++NDI
Sbjct: 439 DISGNGIQDQGAKALAA-----NPTLTTLDVSSNDI 469
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 131/491 (26%), Positives = 207/491 (42%), Gaps = 87/491 (17%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP
Sbjct: 66 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 123
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
+L + L+G+ TD L L ++L++LD + C I+ G+ HL
Sbjct: 124 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGPITAAGIAHLS 167
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L L L+ R N I A+G + A L L++ G L +L +LN+
Sbjct: 168 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 225
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N I + K L+ L+SL +S +++ D G L AAC
Sbjct: 226 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL-----------------AACTQ- 266
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L L+ NR + DG + +L L +G NEI D ++ L L +LN+
Sbjct: 267 ------LTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNV 320
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+S G+G +G+ L L + L I + LA +SL +L+L+ +I G A
Sbjct: 321 ESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQA 380
Query: 344 LTSLTGLTHLDL-------FGAR-----------------ITDSGAAYLRNFKNLRSLEI 379
L + T LT LDL G R + D+ A L K L +L+I
Sbjct: 381 LAANTKLTTLDLGYNDIGDAGVRTLSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDI 440
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G G+ D G K + +LT L++S N ++ + ++ LVSL++ N+R+ +G R
Sbjct: 441 SGNGIQDQGAKALAANPTLTTLDVSSN-DIRNAGARALAANARLVSLDLRNNRMEESGTR 499
Query: 440 HLKPLKNLRSL 450
L + L SL
Sbjct: 500 ALLANRTLSSL 510
>gi|301756605|ref|XP_002914145.1| PREDICTED: f-box/LRR-repeat protein 14-like [Ailuropoda
melanoleuca]
Length = 420
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 182/381 (47%), Gaps = 67/381 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 180 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 200
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 260
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 261 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 320 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 379
Query: 444 LKNLRSLTLESCKVTANDIKR 464
L L+ L L ++T ++ R
Sbjct: 380 LPCLKVLNLGLWQMTDSEKVR 400
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 178/343 (51%), Gaps = 50/343 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
+N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L L+
Sbjct: 90 ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 149
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+ L +
Sbjct: 150 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 209
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C +SD
Sbjct: 210 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 269
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGL 299
G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 270 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM--- 325
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG 357
+R++ G L++LN+ +ITD GL + L+ LT +DL+G
Sbjct: 326 -----------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 365
Query: 358 -ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
RIT G + L+ L + +TD+ + ++D S
Sbjct: 366 CTRITKRGLERITQLPCLKVLNLGLWQMTDS--EKVRDCSDFA 406
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 48/241 (19%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--LTGLTNLESINLSF-TGISDGSLRKLA------ 321
++G+ N+ESLNL C + D GL + + + +L ++NLS I+D SL ++A
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 322 ---------------------GLSSLKSLNLDA-RQITDTGLAALTSLT--------GLT 351
GL LKSLNL + R ++D G+ L +T GL
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 352 HLDLFGA-RITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCD 264
Query: 408 NLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKR 464
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I R
Sbjct: 265 NISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 465 L 465
+
Sbjct: 325 M 325
>gi|290993851|ref|XP_002679546.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284093163|gb|EFC46802.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 385
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 144/303 (47%), Gaps = 6/303 (1%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L +L L I W N I K +S L L L+I+ ++ G + L +LT LN+
Sbjct: 86 LQQLTRLVISW-NRIGIEGAKAISQLKQLTELEIN--QIGLEGTKIISELNQLTSLNIAN 142
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L L++ QL +G + K+ L L++ N I + L+
Sbjct: 143 NKMGKQGAKYISEMKQLTKLDIGTNQLGVEGVQYIRKLDKLTALSVFNNVIGFRGAMLLR 202
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+T L LN+ + IGD G ++ L NL +NLSF IS + ++ L L LN++
Sbjct: 203 KMTQLTELNISTNAIGDVGAKFVSDLPNLAILNLSFNSISYVGAQFISKLPKLTELNMNQ 262
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI 392
+ + G+ ++ + LT+L L RI + G ++ K LR L++C + DAG K +
Sbjct: 263 NDLGNEGVKFISGIISLTNLSLQTTRIDEHGVKFISEKLKQLRILKLCENNIGDAGAKFL 322
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLT 451
L LT L+L N N+ + + IS + L L + + I G + + + LK L+
Sbjct: 323 ITLEKLTDLSLYSN-NIGYEGAKAISTMKALTHLRIHGNPIGIEGAKEIYEQLKELKEYC 381
Query: 452 LES 454
L+
Sbjct: 382 LDQ 384
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 146/328 (44%), Gaps = 33/328 (10%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
Q L + +S + + G + L L+ N QI G + + L+ LTSL+
Sbjct: 85 QLQQLTRLVISWNRIGIEGAKAISQLKQLTELEIN---QIGLEGTKIISELNQLTSLNIA 141
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
NN + QG K + + L KLD+ G+ ++ L KL +L++ + N I
Sbjct: 142 -NNKMGKQGAKYISEMKQLTKLDIGTNQLGVEGVQYIRKLDKLTALSV-FNNVIGFRGAM 199
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L +T L L IS + + D G ++ L L +LNL +S+S +G+ F
Sbjct: 200 LLRKMTQLTELNISTNAIGDVGAKFVSDLPNLAILNL--------SFNSISYVGAQF--- 248
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
SK+ L LN+ N++ +E + + G+ +L +L+L + I + G+
Sbjct: 249 -------------ISKLPKLTELNMNQNDLGNEGVKFISGIISLTNLSLQTTRIDEHGVK 295
Query: 295 NLT-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
++ L L + L I D + L L L L+L + I G A++++ LTHL
Sbjct: 296 FISEKLKQLRILKLCENNIGDAGAKFLITLEKLTDLSLYSNNIGYEGAKAISTMKALTHL 355
Query: 354 DLFGARITDSGAAYLRNFKNLRSL-EIC 380
+ G I GA + ++ L+ L E C
Sbjct: 356 RIHGNPIGIEGAKEI--YEQLKELKEYC 381
>gi|345791735|ref|XP_543882.2| PREDICTED: F-box/LRR-repeat protein 14 [Canis lupus familiaris]
Length = 420
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 182/381 (47%), Gaps = 67/381 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 180 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 200
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 260
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 261 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 320 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 379
Query: 444 LKNLRSLTLESCKVTANDIKR 464
L L+ L L ++T ++ R
Sbjct: 380 LPCLKVLNLGLWQMTDSEKVR 400
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 178/343 (51%), Gaps = 50/343 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
+N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L L+
Sbjct: 90 ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 149
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+ L +
Sbjct: 150 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 209
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C +SD
Sbjct: 210 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 269
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGL 299
G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 270 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM--- 325
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG 357
+R++ G L++LN+ +ITD GL + L+ LT +DL+G
Sbjct: 326 -----------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 365
Query: 358 -ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
RIT G + L+ L + +TD+ + ++D S
Sbjct: 366 CTRITKRGLERITQLPCLKVLNLGLWQMTDS--EKVRDCSDFA 406
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 44/263 (16%)
Query: 224 LSALGSLFYLNLNRC-QLSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
+ + ++ LNL+ C L+D+G +IGSL+ LNL +ITD L + + L L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQIT 337
E L L C N++ TG+ L GL LKSLNL + R ++
Sbjct: 146 EVLELGGCS------------------NITNTGL----LLIAWGLQRLKSLNLRSCRHLS 183
Query: 338 DTGLAALTSLT--------GLTHLDLFGA-RITDSGAAYL-RNFKNLR--SLEICGGGLT 385
D G+ L +T GL L L ++TD ++ R LR +L CGG ++
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-IS 242
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-K 442
DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++ +
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
L L+SL+L SC ++ + I R+
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRM 325
>gi|430741732|ref|YP_007200861.1| hypothetical protein Sinac_0756 [Singulisphaera acidiphila DSM
18658]
gi|430013452|gb|AGA25166.1| hypothetical protein Sinac_0756 [Singulisphaera acidiphila DSM
18658]
Length = 304
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 6/183 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL L L+ + + F ++++ GL HL+G ++L SL R IT +G+ A
Sbjct: 113 MTDTGLAQLGGLPRLRQV-YCFKPKVTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLA 171
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
GL NL KL+L RI G GL +L L +L +L + TD+ + L TNLK L +
Sbjct: 172 GLTNLEKLNLS-GARIAGPGLPHLARLGRLRTLVL---GSTTDAGLAQLGRFTNLKQLYL 227
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
K TD+G+A L L+ LT L LE +T A L ++ L +L L+L +S EK
Sbjct: 228 GTGKYTDAGLAELSKLRSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGAPVSQAAIEK 287
Query: 248 FSK 250
F +
Sbjct: 288 FKR 290
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 99/195 (50%), Gaps = 3/195 (1%)
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L P++ +L L L + ++D G + + L+ + ++T+ L
Sbjct: 83 TLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGL 142
Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
HLKG T+L SL L I DEGLV+L GLTNLE +NLS I+ L LA L L++
Sbjct: 143 AHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLARLGRLRT 202
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L L + TD GLA L T L L L + TD+G A L ++L L + G LT+A
Sbjct: 203 LVLGS--TTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLEAGDLTEAV 260
Query: 389 VKHIKDLSSLTLLNL 403
+ H+ L +L L+L
Sbjct: 261 LIHVAGLPNLERLDL 275
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 101/226 (44%), Gaps = 25/226 (11%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I+D L L+ L + +TD+G+A L GL +L + VT A L L
Sbjct: 89 ISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGLAHLKGA 148
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L L R EITDE LVHL GLTNLE LNL
Sbjct: 149 THLVSLELLRVP-----------------------EITDEGLVHLAGLTNLEKLNLSGAR 185
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
I GL +L L L ++ L T +D L +L ++LK L L + TD GLA L+ L
Sbjct: 186 IAGPGLPHLARLGRLRTLVLGST--TDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKL 243
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
LT L L +T++ ++ NL L++ G ++ A ++ K
Sbjct: 244 RSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGAPVSQAAIEKFK 289
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 104/216 (48%), Gaps = 4/216 (1%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
GS+ L + +SD+ L+ L + +TD L L GL L +
Sbjct: 77 GSINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPK 136
Query: 288 IGDEGLVNLTGLTNLESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
+ + GL +L G T+L S+ L I+D L LAGL++L+ LNL +I GL L
Sbjct: 137 VTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLAR 196
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L L L L TD+G A L F NL+ L + G TDAG+ + L SLT L L +
Sbjct: 197 LGRLRTLVL--GSTTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGL-EA 253
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+LT+ L ++GL L L++ + ++ A + K
Sbjct: 254 GDLTEAVLIHVAGLPNLERLDLGGAPVSQAAIEKFK 289
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 64/131 (48%)
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
S+ L I+D AL L L + +TD+G A L LR + +
Sbjct: 78 SINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKV 137
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
T+AG+ H+K + L L L + +TD+ L ++GLT L LN+S +RI GL HL L
Sbjct: 138 TNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLARL 197
Query: 445 KNLRSLTLESC 455
LR+L L S
Sbjct: 198 GRLRTLVLGST 208
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++TD GL+HL +NL+ L+ + +I+ GL HL L L +L + T G+
Sbjct: 160 PEITDEGLVHLAGLTNLEKLNLSGA-RIAGPGLPHLARLGRLRTLVL---GSTTDAGLAQ 215
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
NL +L L GL L L L L ++ +T++ + ++GL NL+ L
Sbjct: 216 LGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLE-AGDLTEAVLIHVAGLPNLERLD 274
Query: 187 ISCSKVTDSGIAYLK 201
+ + V+ + I K
Sbjct: 275 LGGAPVSQAAIEKFK 289
>gi|410963525|ref|XP_003988315.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Felis catus]
Length = 411
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 182/381 (47%), Gaps = 67/381 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 59 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 112
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 113 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 170
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 171 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 191
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 192 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 251
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 252 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 310
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 311 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 370
Query: 444 LKNLRSLTLESCKVTANDIKR 464
L L+ L L ++T ++ R
Sbjct: 371 LPCLKVLNLGLWQMTDSEKVR 391
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 180/347 (51%), Gaps = 50/347 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 77 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 136
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 137 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 196
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 197 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 256
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 257 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 315
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 316 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 352
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
DL+G RIT G + L+ L + +TD+ + ++D S
Sbjct: 353 DLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS--EKVRDCSDFA 397
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 206 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 265
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 266 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 325
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 326 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 362
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 363 RGLERITQLPCLKVLNLGLWQMTD 386
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 44/263 (16%)
Query: 224 LSALGSLFYLNLNRC-QLSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
+ + ++ LNL+ C L+D+G +IGSL+ LNL +ITD L + + L L
Sbjct: 77 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 136
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQIT 337
E L L C N++ TG+ L GL LKSLNL + R ++
Sbjct: 137 EVLELGGCS------------------NITNTGL----LLIAWGLQRLKSLNLRSCRHLS 174
Query: 338 DTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLT 385
D G+ L +T GL L L ++TD ++ R LR +L CGG ++
Sbjct: 175 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-IS 233
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-K 442
DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++ +
Sbjct: 234 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 293
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
L L+SL+L SC ++ + I R+
Sbjct: 294 GLDGLKSLSLCSCHISDDGINRM 316
>gi|417399805|gb|JAA46888.1| Putative f-box/lrr-repeat protein 14 [Desmodus rotundus]
Length = 368
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 182/381 (47%), Gaps = 67/381 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 36 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEISSLRA 89
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 90 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 147
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 148 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 168
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 169 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 228
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 229 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 287
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 288 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 347
Query: 444 LKNLRSLTLESCKVTANDIKR 464
L L+ L L ++T ++ R
Sbjct: 348 LPCLKVLNLGLWQMTDSEKVR 368
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 176/335 (52%), Gaps = 48/335 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ +S+L +L+ IT + A + L
Sbjct: 54 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGL 113
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 114 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 173
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 174 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 233
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 234 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 292
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 293 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 329
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
DL+G RIT G + L+ L + +TD+
Sbjct: 330 DLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 364
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 183 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 242
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 243 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 302
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 303 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 339
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 340 RGLERITQLPCLKVLNLGLWQMTD 363
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 48/241 (19%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--LTGLTNLESINLSF-TGISDGSLRKLA------ 321
++G+ N+ESLNL C + D GL + + +++L ++NLS I+D SL ++A
Sbjct: 54 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGL 113
Query: 322 ---------------------GLSSLKSLNLDA-RQITDTGLAALTSLT--------GLT 351
GL LKSLNL + R ++D G+ L +T GL
Sbjct: 114 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 173
Query: 352 HLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 174 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCD 232
Query: 408 NLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKR 464
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I R
Sbjct: 233 NISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 292
Query: 465 L 465
+
Sbjct: 293 M 293
>gi|406835554|ref|ZP_11095148.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
Length = 392
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 139/291 (47%), Gaps = 14/291 (4%)
Query: 190 SKVTDSGIAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S++ DS I L +GL ++T +N + VT+A S+S L L L L+ +++++ C
Sbjct: 72 SEINDSAITQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRVTNEAC 131
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
EK +++ +L+VL L + D + L L+NL+SL L C + G + LE +
Sbjct: 132 EKIAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPALEYL 191
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
+ T + D SL + +L SL L ITD GL AL L G+ L+ I G
Sbjct: 192 EIRRTNLDDVSLDLVCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETGIHGWGL 251
Query: 366 AYLRNF---KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLT 421
A+ + KNL+ L + L G K I + S+ L L + L D+ L ++ G+
Sbjct: 252 AHAQKRGGGKNLKELSLFKCPLDGMGAKAIGNFKSVEKLVLGEIPQLDDEGLMTMVRGMK 311
Query: 422 GLVSLNVSN--SRITSAGLRHLKPLKNLRSLTLESCKVTAND----IKRLQ 466
L LN S S + G + L K+L L + C +D IK+++
Sbjct: 312 NLKYLNCSKTPSLFGTLGFKALLGSKDLEELHIGECSRIGDDAVPFIKKMK 362
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 5/190 (2%)
Query: 283 LDSCGIGDEGLVNLT----GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L I D + LT GL + IN F+ ++ + ++ LS L+ L L + ++T+
Sbjct: 69 LKPSEINDSAITQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRVTN 128
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+ L L L L + D G A L NL+SLE+ LT AG + I +L
Sbjct: 129 EACEKIAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPAL 188
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L + + NL D +L+L+ LVSL +SN+ IT GL L L + L +
Sbjct: 189 EYLEI-RRTNLDDVSLDLVCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETGIH 247
Query: 459 ANDIKRLQSR 468
+ Q R
Sbjct: 248 GWGLAHAQKR 257
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 125/298 (41%), Gaps = 37/298 (12%)
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL + +++ + T ++ L KL L + +T+ + ++ L L+ L +S
Sbjct: 88 GLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTR-VTNEACEKIAELPALEVLILS 146
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ V D G+A L L L L L C +T A ++ A +L YL + R L D +
Sbjct: 147 DTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPALEYLEIRRTNLDDVSLDLV 206
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT---GLTNLESI 305
+L L L N ITD+ L L L +E L + GI GL + G NL+ +
Sbjct: 207 CNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETGIHGWGLAHAQKRGGGKNLKEL 266
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLD---------L 355
+L + + + S++ L L + Q+ D GL +T + G+ +L L
Sbjct: 267 SLFKCPLDGMGAKAIGNFKSVEKLVLGEIPQLDDEGL--MTMVRGMKNLKYLNCSKTPSL 324
Query: 356 FG---------------------ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
FG +RI D +++ KNL+ L + G ++ G+ +
Sbjct: 325 FGTLGFKALLGSKDLEELHIGECSRIGDDAVPFIKKMKNLKILRVHGTSISARGMAEL 382
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 14 LVYSRC-LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS 72
L SRC LT +A + + ++D +D++ + +L+S+ LS + +TD
Sbjct: 167 LELSRCHLTRAGFQAIGAFPALEYLEIRRTNLDDVSLDLVCN-AKTLVSLRLSNNPITDQ 225
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFAG 129
GL L ++ L+FN I GL H + G NL LS + + G KA
Sbjct: 226 GLDALGKLPGIEVLEFNET-GIHGWGLAHAQKRGGGKNLKELSLFK-CPLDGMGAKAIGN 283
Query: 130 LINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDM------KPLSGLTNL 182
++ KL L ++ GL+ + MK N+K+ NC + K L G +L
Sbjct: 284 FKSVEKLVLGEIPQLDDEGLMTMVRGMK----NLKYLNCSKTPSLFGTLGFKALLGSKDL 339
Query: 183 KSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ L I CS++ D + ++K ++ L +L + G ++A + L+
Sbjct: 340 EELHIGECSRIGDDAVPFIKKMKNLKILRVHGTSISARGMAELA 383
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 117/274 (42%), Gaps = 51/274 (18%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + V D G+ L SNL+SL+ + C ++ G + + L L RR N
Sbjct: 145 LSDTVVDDVGVAALSRLSNLKSLELSRC-HLTRAGFQAIGAFPALEYLEIRRTN------ 197
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++ V LDL + N K L+ L N N ITD + L L ++
Sbjct: 198 -------LDDVSLDL---------VCNAKTLVSLRLSN----NPITDQGLDALGKLPGIE 237
Query: 184 SLQISCSKVTDSGIAYLK---GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-Q 239
L+ + + + G+A+ + G + L L+L CP+ ++ S+ L L Q
Sbjct: 238 VLEFNETGIHGWGLAHAQKRGGGKNLKELSLFKCPLDGMGAKAIGNFKSVEKLVLGEIPQ 297
Query: 240 LSDDGCEKFSK-IGSLKVLN----------LGFNEITDECLVHLKGLTNLESLNLDSCG- 287
L D+G + + +LK LN LGF L G +LE L++ C
Sbjct: 298 LDDEGLMTMVRGMKNLKYLNCSKTPSLFGTLGFK--------ALLGSKDLEELHIGECSR 349
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
IGD+ + + + NL+ + + T IS + +LA
Sbjct: 350 IGDDAVPFIKKMKNLKILRVHGTSISARGMAELA 383
>gi|290973418|ref|XP_002669445.1| predicted protein [Naegleria gruberi]
gi|284082993|gb|EFC36701.1| predicted protein [Naegleria gruberi]
Length = 280
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 137/275 (49%), Gaps = 4/275 (1%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L+I + N I K +S + L L I +++ D G + +++LT L++ G ++
Sbjct: 7 LDIGY-NQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGNQISDE 65
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
S+S + L +L++ + D G + S++ L +LN+G N+I DE + + L
Sbjct: 66 GARSISKMRQLTFLDIYGNGIGDKGAKSISEMQQLTLLNIGGNQIGDEGAKLISQMKQLT 125
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L++ I EG ++ + L S+N+ I ++ L+ + L SLN+ I D
Sbjct: 126 FLDIYCNEIDVEGAKCISEMQQLTSLNIGSNEIGVEGVKFLSEMQQLTSLNIGENLIGDE 185
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
G ++ + LT LD++ I GA + + L SL I G+ D G K I ++ LT
Sbjct: 186 GAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQLTSLNIGENGIGDEGAKLISEMKQLT 245
Query: 400 LLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRI 433
L++ CN + + + IS + L SLN+SN++I
Sbjct: 246 FLDIY--CNEIGVEGAKYISEMKQLTSLNISNNQI 278
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 112/224 (50%), Gaps = 1/224 (0%)
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L++ Q+ +G + S++ L +LN+G NEI DE + + + L L++ I
Sbjct: 3 QLTLLDIGYNQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGNQI 62
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
DEG +++ + L +++ GI D + ++ + L LN+ QI D G ++ +
Sbjct: 63 SDEGARSISKMRQLTFLDIYGNGIGDKGAKSISEMQQLTLLNIGGNQIGDEGAKLISQMK 122
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
LT LD++ I GA + + L SL I + GVK + ++ LT LN+ +N
Sbjct: 123 QLTFLDIYCNEIDVEGAKCISEMQQLTSLNIGSNEIGVEGVKFLSEMQQLTSLNIGENL- 181
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ D+ +LIS + L L++ + I G + + ++ L SL +
Sbjct: 182 IGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQLTSLNI 225
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L LN+ +I D G ++ + LT LD+ G +I+D GA + + L L+I G
Sbjct: 25 MKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGNQISDEGARSISKMRQLTFLDIYGN 84
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
G+ D G K I ++ LTLLN+ N + D+ +LIS + L L++ + I G + +
Sbjct: 85 GIGDKGAKSISEMQQLTLLNIGGN-QIGDEGAKLISQMKQLTFLDIYCNEIDVEGAKCIS 143
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
++ L SL + S ++ +K L
Sbjct: 144 EMQQLTSLNIGSNEIGVEGVKFL 166
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 131/298 (43%), Gaps = 34/298 (11%)
Query: 46 DKWMDVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
D + I +G+ L+S +++ +++ D G I + + L LD QISD G
Sbjct: 8 DIGYNQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGN-QISDEG 66
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ + LT L N I +G K+ + ++++ T L+N+ G
Sbjct: 67 ARSISKMRQLTFLDIY-GNGIGDKGAKSIS--------EMQQLT-----LLNIGG----- 107
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
N I D K +S + L L I C+++ G + +Q+LT LN+ +
Sbjct: 108 -------NQIGDEGAKLISQMKQLTFLDIYCNEIDVEGAKCISEMQQLTSLNIGSNEIGV 160
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ LS + L LN+ + D+G + S++ L L++ NEI E + + L
Sbjct: 161 EGVKFLSEMQQLTSLNIGENLIGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQL 220
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
SLN+ GIGDEG ++ + L +++ I + ++ + L SLN+ QI
Sbjct: 221 TSLNIGENGIGDEGAKLISEMKQLTFLDIYCNEIGVEGAKYISEMKQLTSLNISNNQI 278
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 5/240 (2%)
Query: 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
++ S+ L +D+ G+ ++D G + L LD + I D G + + + LT
Sbjct: 44 IMISEMKQLTFLDIGGNQISDEGARSISKMRQLTFLDI-YGNGIGDKGAKSISEMQQLTL 102
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCIT 169
L+ N I +G K + + L LD+ C I G + + +L SLNI N I
Sbjct: 103 LNIG-GNQIGDEGAKLISQMKQLTFLDI-YCNEIDVEGAKCISEMQQLTSLNI-GSNEIG 159
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+K LS + L SL I + + D G + +++LT L++ + S+S +
Sbjct: 160 VEGVKFLSEMQQLTSLNIGENLIGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQ 219
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L LN+ + D+G + S++ L L++ NEI E ++ + L SLN+ + IG
Sbjct: 220 LTSLNIGENGIGDEGAKLISEMKQLTFLDIYCNEIGVEGAKYISEMKQLTSLNISNNQIG 279
>gi|344278047|ref|XP_003410808.1| PREDICTED: F-box/LRR-repeat protein 14 [Loxodonta africana]
Length = 514
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 185/387 (47%), Gaps = 69/387 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYHLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 180 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 200
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 260
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 261 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 320 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 379
Query: 444 LKNLRSLTLESCKVTANDIKRLQSRDL 470
L L+ L L ++T D ++ SR+
Sbjct: 380 LPCLKVLNLGLWQMT--DSEKTSSREF 404
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 173/321 (53%), Gaps = 26/321 (8%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYHLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 296 LT-GLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLT 351
+ + L ++N+ I+D L +A LS L ++L +IT GL +T L L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLK 384
Query: 352 HLDLFGARITDSGAAYLRNFK 372
L+L ++TDS R F+
Sbjct: 385 VLNLGLWQMTDSEKTSSREFQ 405
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 33/206 (16%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL----KGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
A G + L LD+ C ++ G +L +GL L+SL++ C+ D + + + L
Sbjct: 275 AMGSLRLSGLDVSFCDKV--GDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGL 332
Query: 183 KSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
++L I C ++TD G+ + + L +LT ++L GC ++
Sbjct: 333 RTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC-----------------------TRI 369
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITD 266
+ G E+ +++ LKVLNLG ++TD
Sbjct: 370 TKRGLERITQLPCLKVLNLGLWQMTD 395
>gi|18204097|gb|AAH21329.1| F-box and leucine-rich repeat protein 14 [Mus musculus]
Length = 400
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 182/381 (47%), Gaps = 67/381 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 180 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 200
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 260
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 261 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 320 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 379
Query: 444 LKNLRSLTLESCKVTANDIKR 464
L L+ L L ++T ++ R
Sbjct: 380 LPCLKVLNLGLWQMTDSEKVR 400
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 175/335 (52%), Gaps = 48/335 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 325 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 361
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
DL+G RIT G + L+ L + +TD+
Sbjct: 362 DLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 44/263 (16%)
Query: 224 LSALGSLFYLNLNRC-QLSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
+ + ++ LNL+ C L+D+G +IGSL+ LNL +ITD L + + L L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQIT 337
E L L C N++ TG+ L GL LKSLNL + R ++
Sbjct: 146 EVLELGGCS------------------NITNTGL----LLIAWGLQRLKSLNLRSCRHLS 183
Query: 338 DTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLT 385
D G+ L +T GL L L ++TD ++ R LR +L CGG ++
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-IS 242
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-K 442
DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++ +
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
L L+SL+L SC ++ + I R+
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRM 325
>gi|84043372|ref|XP_951476.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348176|gb|AAQ15503.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62359981|gb|AAX80405.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1393
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 140/501 (27%), Positives = 211/501 (42%), Gaps = 70/501 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L +N W + Q L LS + +TD G+ + C NL +LD +FC
Sbjct: 556 ALNELNLSNCIRINAGWEALEKLQ--QLHVAILSNTHITDRGISYFSKCKNLVTLDLSFC 613
Query: 92 IQISD-------GGLEHL---------RGLSNLTSLSFRRNNAITAQGMKAFAGLI---- 131
++ D LE L +GLS L L R + +G++ +I
Sbjct: 614 NKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELP--RLCVLNIKGVQLEDSVIGSLG 671
Query: 132 ---NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+LV+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L +
Sbjct: 672 NGKSLVRLSLENC-KGFGDVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLPQLRVLDLG 729
Query: 189 CSKVTD------------------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
++V D + I+ + L L LN++ C + +
Sbjct: 730 RTQVDDNSLENICTSSIPLVSLNFSHCKKITSISAIASLTALEELNIDNCCNVTSGWNVF 789
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
L L L+ +++D+ S+ SL LNL F +ITD + L +T LE LNL
Sbjct: 790 GTLHQLRVATLSNTRINDEKIRHVSECKSLNTLNLAFCKDITD--VTALSKITMLEELNL 847
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTG 340
D C +G+ L L +++ + DG ++ L SL LNL+ R
Sbjct: 848 DCCPNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLE-RSRGRIS 906
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA---GVKHIKDLSS 397
+ AL+ + L L L AR + +F L L + TD K+I + S
Sbjct: 907 VKALSDIATLEELVLDHAR----EVCCIPSFSCLPRLRVLNLKYTDINGDATKNISESKS 962
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L LNLS +TD + ++S L+ L LNV+ G L L LR L +
Sbjct: 963 LRSLNLSHCKWVTD--ISVLSSLSTLEELNVNCCNAIRKGWESLGKLPLLRVAILSDTNI 1020
Query: 458 TANDIKRLQS-RDLPNLVSFR 477
TA DI L S + L L FR
Sbjct: 1021 TAKDIACLSSCKKLVKLKFFR 1041
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 114/430 (26%), Positives = 180/430 (41%), Gaps = 69/430 (16%)
Query: 37 CLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT--------DSGLIHLKDCSNLQSLDF 88
CLG P + + + SL S+ LS + V+ + + H+ L L+
Sbjct: 503 CLGNLPQLKVLDLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTNVSHISSLEALNELNL 562
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
+ CI+I + G E L L L ++ N IT +G+ F+ NLV LDL C ++
Sbjct: 563 SNCIRI-NAGWEALEKLQQL-HVAILSNTHITDRGISYFSKCKNLVTLDLSFCNKLL--- 617
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLT 207
D+ LS +T L+ L + SCS + G++ L L +L
Sbjct: 618 -----------------------DVTTLSNITTLEELNLDSCSNIR-KGLSVLGELPRLC 653
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
+LN++G + + + SL SL L+L C+ GF ++T
Sbjct: 654 VLNIKGVQLEDSVIGSLGNGKSLVRLSLENCK--------------------GFGDVTP- 692
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS-SL 326
L L LE LNL C G+ L L L ++L T + D SL + S L
Sbjct: 693 ----LSNLVTLEELNLHYCDKVTSGMGTLGRLPQLRVLDLGRTQVDDNSLENICTSSIPL 748
Query: 327 KSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
SLN ++IT ++A+ SLT L L++ SG LR + +
Sbjct: 749 VSLNFSHCKKIT--SISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRIN 806
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
D ++H+ + SL LNL+ ++TD T +S +T L LN+ G+ L L
Sbjct: 807 DEKIRHVSECKSLNTLNLAFCKDITDVT--ALSKITMLEELNLDCCPNIRKGIETLGTLP 864
Query: 446 NLRSLTLESC 455
R L+++ C
Sbjct: 865 KARILSMKEC 874
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 121/429 (28%), Positives = 187/429 (43%), Gaps = 60/429 (13%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++L +D+ ++ + +L+SL+ + C ++D +S L+SLS
Sbjct: 942 LNLKYTDINGDATKNISESKSLRSLNLSHCKWVTD--------ISVLSSLS--------- 984
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
L +L++ C I G +L G + L + I IT D+ LS
Sbjct: 985 ----------TLEELNVNCCNAIRKGWESL-GKLPLLRVAILSDTNITAKDIACLSSCKK 1033
Query: 182 LKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L L+ C K++D + Y +Q L L ++ C L++L L L +L+L
Sbjct: 1034 LVKLKFFRCKKLSDVTVVY--KIQSLEELIVKNCSGGLKGLNALGTLPRLRFLHLRNVSG 1091
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
SD E SL LN+ E+TD L +T+LE L+L CG EG+ L L
Sbjct: 1092 SDISVESIGTSKSLVRLNIETREELTDT--TPLSNITSLEELSLRKCGNNLEGVGTLGKL 1149
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
L S+ L + I+D +L + S+ SLNL A T ++ ++ LT L L+L G
Sbjct: 1150 PRLRSLYLGLSRINDSTLYYICLSRSITSLNL-ASSWKLTDISHISKLTALEELNLRGCY 1208
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTD------- 411
SG L LR L + +T G +I+ SL L+L ++C++TD
Sbjct: 1209 PITSGWEALSELPRLRVLNLESTRVTTRYGGYYIRRCKSLVTLSL-ESCDMTDASCLANI 1267
Query: 412 KTL---------ELISGLTGLVS------LNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
KTL EL G + L + LN+ S IT LR ++P + L L C+
Sbjct: 1268 KTLEELHIGRCKELRWGFSPLFTLPRLRILNLICSLITDEDLREIQPPHTIEELNLSYCE 1327
Query: 457 VTANDIKRL 465
NDI L
Sbjct: 1328 -ELNDITPL 1335
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 181/410 (44%), Gaps = 57/410 (13%)
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
HL + L L+ +T ++ + L NL+ L+L + + KL L
Sbjct: 196 HLFSVGTLEELAITDTMQLT--NIRGISRLTNLMCLELNSTDIDDTCIGEISACAKLSKL 253
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
++ CN ITD+ P+S L L+ L + SC +T GI L L +L +L+L G PV
Sbjct: 254 SVSECNNITDA--TPISQLAALEELNLNSCYHIT-KGIGTLGMLLRLRMLDLSGVPVEDN 310
Query: 220 CLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK-------IGSLKV 256
CL L GSL LN++ C QL+D +GC + ++ + L+V
Sbjct: 311 CLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIDVVWALPKLRV 370
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDG 315
++ +++ L + +L ++LD+C G GD L L+ + LE +N+
Sbjct: 371 FHMKDVHLSEPSLDSVGTGGSLVKVSLDNCAGFGDMSL--LSSIVTLEELNIQKCADIIS 428
Query: 316 SLRKLAGLSSLKSLNLDARQITD---TGLAA--------LTSLTGLTHLD---------- 354
+ L L L+ LN+ I+ TG+ A + S+TGL++++
Sbjct: 429 GVGCLGTLPYLRVLNIKEVHISSLDFTGIGASKSLLQLNMESITGLSNVEALANILTLEK 488
Query: 355 --LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L G D+G L N L+ L++ G + ++ + ++ LNLS +T+
Sbjct: 489 LSLHGCTDIDAGIGCLGNLPQLKVLDLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTN- 547
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
+ IS L L LN+SN +AG L+ L+ L L + +T I
Sbjct: 548 -VSHISSLEALNELNLSNCIRINAGWEALEKLQQLHVAILSNTHITDRGI 596
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 124/466 (26%), Positives = 193/466 (41%), Gaps = 63/466 (13%)
Query: 20 LTEVSLEAFRD-CALQDL-CLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VT 70
L E+ L+ R+ C + CL + +N K+ D+ S+ SL S++LS VT
Sbjct: 916 LEELVLDHAREVCCIPSFSCLPRLRVLNLKYTDINGDATKNISESKSLRSLNLSHCKWVT 975
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D + L S L+ L+ N C I G E L L L ++ + ITA+ + +
Sbjct: 976 DISV--LSSLSTLEELNVNCCNAIRKG-WESLGKLP-LLRVAILSDTNITAKDIACLSSC 1031
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ---- 186
LVKL RC ++ V K + LE L +K C+ +K L+ L L L+
Sbjct: 1032 KKLVKLKFFRCKKLSDVTVVYK-IQSLEELIVKNCS----GGLKGLNALGTLPRLRFLHL 1086
Query: 187 --ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+S S ++ I K L +L + E T LS + SL L+L +C + +G
Sbjct: 1087 RNVSGSDISVESIGTSKSLVRLNIETREELTDTTP----LSNITSLEELSLRKCGNNLEG 1142
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLV-----------------------HLKGLTNLESL 281
K+ L+ L LG + I D L H+ LT LE L
Sbjct: 1143 VGTLGKLPRLRSLYLGLSRINDSTLYYICLSRSITSLNLASSWKLTDISHISKLTALEEL 1202
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL-----SSLKSLNLDARQI 336
NL C G L+ L L +NL T ++ + G SL +L+L++ +
Sbjct: 1203 NLRGCYPITSGWEALSELPRLRVLNLESTRVTT----RYGGYYIRRCKSLVTLSLESCDM 1258
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD + L ++ L L + + G + L LR L + +TD ++ I+
Sbjct: 1259 TDA--SCLANIKTLEELHIGRCKELRWGFSPLFTLPRLRILNLICSLITDEDLREIQPPH 1316
Query: 397 SLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRHL 441
++ LNLS L D T L I + L ++R + G R L
Sbjct: 1317 TIEELNLSYCEELNDITPLGRIKSIKKLHLRQSHDARRPTEGFRSL 1362
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 111/460 (24%), Positives = 185/460 (40%), Gaps = 70/460 (15%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRN 116
+L ++L D SG+ L L+ LD Q+ D LE++ S L SL+F
Sbjct: 698 TLEELNLHYCDKVTSGMGTLGRLPQLRVLDLGR-TQVDDNSLENICTSSIPLVSLNFSHC 756
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT+ + A A L L +L+++ C + G L +L + I D ++ +
Sbjct: 757 KKITS--ISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTR-INDEKIRHV 813
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S +L +L ++ C +TD + L + L LNL+ CP +++L L L++
Sbjct: 814 SECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGTLPKARILSM 871
Query: 236 NRCQLSDDGCEK------------------------------------------------ 247
C + D ++
Sbjct: 872 KECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALSDIATLEELVLDHAREVCCIP 931
Query: 248 -FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN 306
FS + L+VLNL + +I + ++ +L SLNL C + V L+ L+ LE +N
Sbjct: 932 SFSCLPRLRVLNLKYTDINGDATKNISESKSLRSLNLSHCKWVTDISV-LSSLSTLEELN 990
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGA 365
++ L L L+ L IT +A L+S L L F +++D
Sbjct: 991 VNCCNAIRKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLKFFRCKKLSDVTV 1050
Query: 366 AYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
Y ++L L + C GGL G+ + L L L+L +N + +D ++E I L
Sbjct: 1051 VY--KIQSLEELIVKNCSGGL--KGLNALGTLPRLRFLHL-RNVSGSDISVESIGTSKSL 1105
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
V LN+ T L PL N+ SL S + N+++
Sbjct: 1106 VRLNIE----TREELTDTTPLSNITSLEELSLRKCGNNLE 1141
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 10/182 (5%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTL 208
++ L LE LN++ C IT S + LS L L+ L + ++VT G Y++ + L
Sbjct: 1192 HISKLTALEELNLRGCYPIT-SGWEALSELPRLRVLNLESTRVTTRYGGYYIRRCKSLVT 1250
Query: 209 LNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+LE C +T A+CL ++ L L ++ RC+ G + L++LNL + ITDE
Sbjct: 1251 LSLESCDMTDASCLANIKTLEEL---HIGRCKELRWGFSPLFTLPRLRILNLICSLITDE 1307
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L ++ +E LNL C E L ++T L ++SI S + R G SL
Sbjct: 1308 DLREIQPPHTIEELNLSYC----EELNDITPLGRIKSIKKLHLRQSHDARRPTEGFRSLL 1363
Query: 328 SL 329
L
Sbjct: 1364 EL 1365
>gi|115495249|ref|NP_001069415.1| F-box/LRR-repeat protein 14 [Bos taurus]
gi|225543352|ref|NP_598701.2| F-box/LRR-repeat protein 14 [Mus musculus]
gi|404312677|ref|NP_001258205.1| F-box/LRR-repeat protein 14 [Rattus norvegicus]
gi|296211085|ref|XP_002752262.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Callithrix
jacchus]
gi|332249161|ref|XP_003273733.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Nomascus
leucogenys]
gi|348555895|ref|XP_003463758.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cavia porcellus]
gi|395845614|ref|XP_003795522.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Otolemur
garnettii]
gi|48428059|sp|Q8BID8.1|FXL14_MOUSE RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|122144674|sp|Q17R01.1|FXL14_BOVIN RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|26351129|dbj|BAC39201.1| unnamed protein product [Mus musculus]
gi|74196388|dbj|BAE33081.1| unnamed protein product [Mus musculus]
gi|109659305|gb|AAI18094.1| F-box and leucine-rich repeat protein 14 [Bos taurus]
gi|119609336|gb|EAW88930.1| F-box and leucine-rich repeat protein 14, isoform CRA_c [Homo
sapiens]
gi|148667199|gb|EDK99615.1| F-box and leucine-rich repeat protein 14 [Mus musculus]
gi|149049602|gb|EDM02056.1| rCG29594 [Rattus norvegicus]
gi|296487055|tpg|DAA29168.1| TPA: F-box/LRR-repeat protein 14 [Bos taurus]
Length = 400
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 182/381 (47%), Gaps = 67/381 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 180 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 200
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 260
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 261 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 320 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 379
Query: 444 LKNLRSLTLESCKVTANDIKR 464
L L+ L L ++T ++ R
Sbjct: 380 LPCLKVLNLGLWQMTDSEKVR 400
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 175/335 (52%), Gaps = 48/335 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 325 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 361
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
DL+G RIT G + L+ L + +TD+
Sbjct: 362 DLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 44/263 (16%)
Query: 224 LSALGSLFYLNLNRC-QLSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
+ + ++ LNL+ C L+D+G +IGSL+ LNL +ITD L + + L L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQIT 337
E L L C N++ TG+ L GL LKSLNL + R ++
Sbjct: 146 EVLELGGCS------------------NITNTGL----LLIAWGLQRLKSLNLRSCRHLS 183
Query: 338 DTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLT 385
D G+ L +T GL L L ++TD ++ R LR +L CGG ++
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-IS 242
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-K 442
DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++ +
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
L L+SL+L SC ++ + I R+
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRM 325
>gi|374586212|ref|ZP_09659304.1| hypothetical protein Lepil_2392 [Leptonema illini DSM 21528]
gi|373875073|gb|EHQ07067.1| hypothetical protein Lepil_2392 [Leptonema illini DSM 21528]
Length = 346
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 2/267 (0%)
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
TD+ + L +Q+L L+L G T A L L+ L LNL+ ++D G + +I
Sbjct: 62 TDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLKELNLSTGPITDAGLKSIGQIK 121
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
+L+ L+L +ITD + L GL+ L+ L+L + D + ++ + +LE + L+ TGI
Sbjct: 122 TLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGI 181
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
+D + +L L+ L L +TD + + + L +I G LR K
Sbjct: 182 TDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQAK 241
Query: 373 NLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
NLR L + + D ++ ++ L +L+L + +T KT+E I+ + L V +
Sbjct: 242 NLRRLWLADTSVDDDDLIELLQPPMELDMLHLG-HLKITGKTMEAIARCNCVKDLYVGYT 300
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVT 458
+I + L L P L+S+T+ +VT
Sbjct: 301 KIGNDDLLKLIPATRLKSITVTKTRVT 327
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 8/243 (3%)
Query: 79 DCSNLQSLD-FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
D + +++++ + + Q+ + +R + + +L T M + L KL
Sbjct: 26 DWAKVRAIEQYVYTGQLKGVTMAEIRAVKDWYAL------GATDAEMPRLLSMQRLEKLS 79
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
L LV+L G L+ LN+ ITD+ +K + + L+ L ++ +K+TD+G+
Sbjct: 80 LGGQNYTDAALVHLAGFKHLKELNLS-TGPITDAGLKSIGQIKTLEKLDLAETKITDAGV 138
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A L GL +L L+L VT AC+ S+ + SL L LN ++D G E+ + L+ L
Sbjct: 139 ADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGITDRGVEQLIQHQRLRKL 198
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSL 317
LG +TDE + ++ + NL+ I +GLV L NL + L+ T + D L
Sbjct: 199 ILGGTAVTDESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQAKNLRRLWLADTSVDDDDL 258
Query: 318 RKL 320
+L
Sbjct: 259 IEL 261
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
+D + + L+ L+LG TD LVHL G +L+ LNL + I D GL ++ +
Sbjct: 62 TDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLKELNLSTGPITDAGLKSIGQIK 121
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LE ++L+ T I+D + L GLS LK L+L +TD + ++ + L L L I
Sbjct: 122 TLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGI 181
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD G L + LR L + G +TD V ++ +Q NL +
Sbjct: 182 TDRGVEQLIQHQRLRKLILGGTAVTDESVGYV-----------AQIANLDEAVF------ 224
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
S ++I GL L+ KNLR L L V +D+ L
Sbjct: 225 --------SRTKIRGKGLVRLRQAKNLRRLWLADTSVDDDDLIEL 261
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 155/341 (45%), Gaps = 37/341 (10%)
Query: 3 PRDISQ-QIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYP-GVNDKWMDVIASQGSSLL 60
P D ++ + + VY+ L V++ R A++D Y G D M + S L
Sbjct: 24 PADWAKVRAIEQYVYTGQLKGVTMAEIR--AVKDW----YALGATDAEMPRLLSM-QRLE 76
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L G + TD+ L+HL G +HL+ L NL++ IT
Sbjct: 77 KLSLGGQNYTDAALVHL-------------------AGFKHLKEL-NLST------GPIT 110
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G+K+ + L KLDL G+ +L GL +L+ L++ +TD+ M + +
Sbjct: 111 DAGLKSIGQIKTLEKLDLAETKITDAGVADLVGLSRLKDLSL-IDTAVTDACMTSIMQMK 169
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L+ LQ++ + +TD G+ L Q+L L L G VT + ++ + +L +R ++
Sbjct: 170 SLEILQLNMTGITDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLDEAVFSRTKI 229
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNLTGL 299
G + + +L+ L L + D+ L+ L+ L+ L+L I + + +
Sbjct: 230 RGKGLVRLRQAKNLRRLWLADTSVDDDDLIELLQPPMELDMLHLGHLKITGKTMEAIARC 289
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
++ + + +T I + L KL + LKS+ + ++TD G
Sbjct: 290 NCVKDLYVGYTKIGNDDLLKLIPATRLKSITVTKTRVTDDG 330
>gi|51850115|dbj|BAD42399.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 1035
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 188/409 (45%), Gaps = 9/409 (2%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL +L L SLD + I + G + L ++LTSL+
Sbjct: 632 SVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNLS 689
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L LD+ + G L L SL ++ I D ++
Sbjct: 690 -GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALASSRSLTSLELR-DTGIEDGGIE 747
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ T L+SL IS + ++D A L + LT L GC +T L+ + SL L
Sbjct: 748 ALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLE 807
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + D G ++ SL+ LNL N IT + L L L+SL++ G GD G +
Sbjct: 808 VGSNSIGDAGVLTIARNASLRSLNLSRNSITPQGLYPLALSRTLKSLDVSRIGCGDRGAL 867
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+G L S+ L F IS R+LA +L SL+L I AL + L L+
Sbjct: 868 LLSGNRALTSLKLGFNRISSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLN 927
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ R+ D+ A L + L SL++ L+ + + D L L++S N ++ +
Sbjct: 928 VSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALADNPVLASLDISHN-DIGPEGA 986
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+ ++ L L+ +RI AG R L+ +R T ++ A D+
Sbjct: 987 QALADSASLTILDARANRIGEAGARLLEANTRMRG-TPQNPHFLAQDVP 1034
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 100/211 (47%), Gaps = 3/211 (1%)
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
+++ L +L L L SL+L GIG+ G L +L S+NLS GI L
Sbjct: 646 VSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAASASLTSLNLSGNGIGTAGAEALGRN 704
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
+ L +L++ A I + G AL S LT L+L I D G L LRSL+I G
Sbjct: 705 TVLTALDISANPIRNAGAQALASSRSLTSLELRDTGIEDGGIEALAANTVLRSLDISGND 764
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
L+D + +LT L + C LT+ + ++ + L +L V ++ I AG+ +
Sbjct: 765 LSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLARIRSLRTLEVGSNSIGDAGVLTIAR 823
Query: 444 LKNLRSLTLESCKVTANDIKRLQ-SRDLPNL 473
+LRSL L +T + L SR L +L
Sbjct: 824 NASLRSLNLSRNSITPQGLYPLALSRTLKSL 854
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 130/313 (41%), Gaps = 53/313 (16%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D + LSGL + L+ +LKG TL +L+ P T L
Sbjct: 94 DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 129
Query: 232 YLNLNRCQLSDDGCEKFSKIG-----SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+L+L+ C S + F I L+ LN+ EI D L +L+SLN S
Sbjct: 130 HLDLSECTGS---AKSFRAIAYLAGLPLESLNVAGAEIGDGGARLLAANPSLKSLNAASG 186
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
GI G L LES++L+ I D + LAG SL+ L + +TD G AL
Sbjct: 187 GISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLRHLAVRNGLVTDVGTRALAL 246
Query: 347 LTGLTHLDL------------------FGARITDSGAAYLRNFKNLRSLEICGGGL-TDA 387
L LDL IT GA L ++L+SL + G L D
Sbjct: 247 NPALVSLDLGNLVTETGNQVEQDGYDKTANNITAQGAWALAQNRSLKSLSVQGNDLCGDD 306
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPLKN 446
GV+ + +LT LN++ N+T + + ++ L SL+V N + AG L ++
Sbjct: 307 GVRALARNRTLTSLNVAF-TNMTSASAKALADNPVLTSLSVRWNYGLDDAGAMELARSRS 365
Query: 447 LRSLTLESCKVTA 459
L SL ++A
Sbjct: 366 LTSLDARDTGMSA 378
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 95/213 (44%), Gaps = 21/213 (9%)
Query: 270 VHLKG----------LTNLESLNLDSC---GIGDEGLVNLTGLTNLESINLSFTGISDGS 316
VHLKG T L L+L C + L GL LES+N++ I DG
Sbjct: 110 VHLKGDFTLADLKALPTTLRHLDLSECTGSAKSFRAIAYLAGLP-LESLNVAGAEIGDGG 168
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
R LA SLKSLN + I+ +G L L LDL I D+GA L ++LR
Sbjct: 169 ARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLRH 228
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L + G +TD G + + +L L+L T +E + + + IT+
Sbjct: 229 LAVRNGLVTDVGTRALALNPALVSLDLGNLVTETGNQVEQD-------GYDKTANNITAQ 281
Query: 437 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 469
G L ++L+SL+++ + +D R +R+
Sbjct: 282 GAWALAQNRSLKSLSVQGNDLCGDDGVRALARN 314
>gi|332249163|ref|XP_003273734.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Nomascus
leucogenys]
gi|119609335|gb|EAW88929.1| F-box and leucine-rich repeat protein 14, isoform CRA_b [Homo
sapiens]
Length = 401
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 181/378 (47%), Gaps = 67/378 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 180 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 200
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 260
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 261 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 320 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 379
Query: 444 LKNLRSLTLESCKVTAND 461
L L+ L L ++T ++
Sbjct: 380 LPCLKVLNLGLWQMTDSE 397
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 175/335 (52%), Gaps = 48/335 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 325 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 361
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
DL+G RIT G + L+ L + +TD+
Sbjct: 362 DLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 44/263 (16%)
Query: 224 LSALGSLFYLNLNRC-QLSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
+ + ++ LNL+ C L+D+G +IGSL+ LNL +ITD L + + L L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQIT 337
E L L C N++ TG+ L GL LKSLNL + R ++
Sbjct: 146 EVLELGGCS------------------NITNTGL----LLIAWGLQRLKSLNLRSCRHLS 183
Query: 338 DTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLT 385
D G+ L +T GL L L ++TD ++ R LR +L CGG ++
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-IS 242
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-K 442
DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++ +
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
L L+SL+L SC ++ + I R+
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRM 325
>gi|281349609|gb|EFB25193.1| hypothetical protein PANDA_001999 [Ailuropoda melanoleuca]
Length = 398
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 181/378 (47%), Gaps = 67/378 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 180 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 200
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 260
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 261 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 320 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 379
Query: 444 LKNLRSLTLESCKVTAND 461
L L+ L L ++T ++
Sbjct: 380 LPCLKVLNLGLWQMTDSE 397
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 175/335 (52%), Gaps = 48/335 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 325 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 361
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
DL+G RIT G + L+ L + +TD+
Sbjct: 362 DLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 44/263 (16%)
Query: 224 LSALGSLFYLNLNRC-QLSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
+ + ++ LNL+ C L+D+G +IGSL+ LNL +ITD L + + L L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQIT 337
E L L C N++ TG+ L GL LKSLNL + R ++
Sbjct: 146 EVLELGGCS------------------NITNTGL----LLIAWGLQRLKSLNLRSCRHLS 183
Query: 338 DTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLT 385
D G+ L +T GL L L ++TD ++ R LR +L CGG ++
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-IS 242
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-K 442
DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++ +
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
L L+SL+L SC ++ + I R+
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRM 325
>gi|195029827|ref|XP_001987773.1| GH22100 [Drosophila grimshawi]
gi|193903773|gb|EDW02640.1| GH22100 [Drosophila grimshawi]
Length = 550
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 116/371 (31%), Positives = 189/371 (50%), Gaps = 62/371 (16%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 214 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 255
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQ 122
+V D L H D NL++LD + C QI+D L + + L NL +L IT
Sbjct: 256 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 315
Query: 123 GMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCITDSD 172
G+ A GL L L+L C I G+ +L G ++LE L ++ C ++D
Sbjct: 316 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEFLGLQDCQRLSDEA 375
Query: 173 MKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +G
Sbjct: 376 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDIGMA 428
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
+ L++ G + L++ F ++I+D+ L H+ +GL L SL+L+ C I
Sbjct: 429 Y--------LTEGG-------SGINCLDVSFCDKISDQALTHIAQGLFRLRSLSLNQCHI 473
Query: 289 GDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAAL 344
D+G++ + L LE++N+ + I+D L+ LA LS+LK+++L Q++ G+ +
Sbjct: 474 TDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDII 533
Query: 345 TSLTGLTHLDL 355
L L L+L
Sbjct: 534 MKLPKLQKLNL 544
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 171/329 (51%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L H V+L L
Sbjct: 224 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 275
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 276 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 335
Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L +L L CQ LSD+ ++ + SLK +NL F
Sbjct: 336 WHISDQGIGHLAGFSRETAEGNLQLEFLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 395
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRK 319
+TD L HL + LE LNL SC I D G+ LT G + + +++SF ISD +L
Sbjct: 396 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINCLDVSFCDKISDQALTH 455
Query: 320 LA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLR 375
+A GL L+SL+L+ ITD G+ + SL L +L++ +RITD G L + NL+
Sbjct: 456 IAQGLFRLRSLSLNQCHITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLK 515
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
++++ G L+ G+ I L L LNL
Sbjct: 516 TIDLYGCTQLSSKGIDIIMKLPKLQKLNL 544
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 161/317 (50%), Gaps = 33/317 (10%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 244 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLET 303
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 304 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 353
Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAG 322
E G LE L L C + DE L ++ GLT+L+SINLSF ++D L+ LA
Sbjct: 354 AE------GNLQLEFLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLAR 407
Query: 323 LSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLE 378
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 408 MPKLEQLNLRSCDNISDIGMAYLTEGGSGINCLDVSFCDKISDQALTHIAQGLFRLRSLS 467
Query: 379 ICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITS 435
+ +TD G+ I K L L LN+ Q +TDK L+ L L+ L ++++ ++++S
Sbjct: 468 LNQCHITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSS 527
Query: 436 AGLRHLKPLKNLRSLTL 452
G+ + L L+ L L
Sbjct: 528 KGIDIIMKLPKLQKLNL 544
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 125/272 (45%), Gaps = 56/272 (20%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
G+ LT LNL GC A ++ LG F ++L +LK L+L
Sbjct: 244 GVPALTSLNLSGC-FNVADMN----LGHAFSVDL----------------PNLKTLDLSL 282
Query: 262 -NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINL-SFTGISDGS 316
+ITD L + + L NLE+L L C I + GL+ + GL L +NL S ISD
Sbjct: 283 CKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG 342
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYL-RNF 371
+ LAG S R+ + L L+ G R++D ++ +
Sbjct: 343 IGHLAGFS---------RETAEGNL----------QLEFLGLQDCQRLSDEALGHIAQGL 383
Query: 372 KNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNV 428
+L+S L C +TD+G+KH+ + L LNL N++D + L G +G+ L+V
Sbjct: 384 TSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINCLDV 442
Query: 429 SN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
S +I+ L H+ + L LRSL+L C +T
Sbjct: 443 SFCDKISDQALTHIAQGLFRLRSLSLNQCHIT 474
>gi|22748931|ref|NP_689654.1| F-box/LRR-repeat protein 14 [Homo sapiens]
gi|386782025|ref|NP_001247451.1| F-box/LRR-repeat protein 14 [Macaca mulatta]
gi|390467358|ref|XP_003733751.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Callithrix
jacchus]
gi|402884767|ref|XP_003905846.1| PREDICTED: F-box/LRR-repeat protein 14 [Papio anubis]
gi|441670511|ref|XP_004092204.1| PREDICTED: F-box/LRR-repeat protein 14 [Nomascus leucogenys]
gi|48428083|sp|Q8N1E6.1|FXL14_HUMAN RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|20381419|gb|AAH28132.1| F-box and leucine-rich repeat protein 14 [Homo sapiens]
gi|119609334|gb|EAW88928.1| F-box and leucine-rich repeat protein 14, isoform CRA_a [Homo
sapiens]
gi|312150528|gb|ADQ31776.1| F-box and leucine-rich repeat protein 14 [synthetic construct]
gi|355563880|gb|EHH20380.1| F-box and leucine-rich repeat protein 14 [Macaca mulatta]
gi|384945426|gb|AFI36318.1| F-box/LRR-repeat protein 14 [Macaca mulatta]
gi|410217776|gb|JAA06107.1| F-box and leucine-rich repeat protein 14 [Pan troglodytes]
Length = 418
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 120/396 (30%), Positives = 186/396 (46%), Gaps = 69/396 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 180 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 200
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 260
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 261 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 320 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 379
Query: 444 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
L L+ L L ++T D ++ D L + R
Sbjct: 380 LPCLKVLNLGLWQMT--DSEKEARGDFSPLFTVRTR 413
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 179/346 (51%), Gaps = 48/346 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 325 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 361
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
DL+G RIT G + L+ L + +TD+ + D S L
Sbjct: 362 DLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKEARGDFSPL 407
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
>gi|291000432|ref|XP_002682783.1| predicted protein [Naegleria gruberi]
gi|284096411|gb|EFC50039.1| predicted protein [Naegleria gruberi]
Length = 303
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 106/202 (52%), Gaps = 6/202 (2%)
Query: 211 LEGCPVTAACLDSL------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
+E + LDS+ S + L L ++ + D+G + S++ L L++ +N+I
Sbjct: 95 IENVKFSRRLLDSIEQAKFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQI 154
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS 324
DE + + L SL++ IGDEG ++ + L S+++ F I + + ++G++
Sbjct: 155 GDEGAKSISEMNQLTSLDISGNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMN 214
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L SL++ +I D G +++ + LT L+++ RI D GA + + K L+SL I G +
Sbjct: 215 QLTSLDISGNRIGDEGAKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRI 274
Query: 385 TDAGVKHIKDLSSLTLLNLSQN 406
D K I ++ LT L++S N
Sbjct: 275 GDEEAKSISEMKQLTSLDISNN 296
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 108/207 (52%), Gaps = 2/207 (0%)
Query: 161 NIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
N+K+ + DS K +S + LKSL I + + D G ++ +++LT L++ +
Sbjct: 97 NVKFSRRLLDSIEQAKFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQIGD 156
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
S+S + L L+++ Q+ D+G + ++ L L++ FN+I +E + G+ L
Sbjct: 157 EGAKSISEMNQLTSLDISGNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMNQL 216
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
SL++ IGDEG +++G+ L S+N+ I D + + + LKSLN+ +I D
Sbjct: 217 TSLDISGNRIGDEGAKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRIGD 276
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGA 365
+++ + LT LD+ RI D A
Sbjct: 277 EEAKSISEMKQLTSLDISNNRIGDEEA 303
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 31/204 (15%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
+ L+SL +D GIGDEG ++ + L S+++ + I D + ++ ++ L SL++
Sbjct: 117 MKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQIGDEGAKSISEMNQLTSLDISGN 176
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
QI D G ++ + LT LD++ +I + GA ++ L SL+I G + D G K I
Sbjct: 177 QIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMNQLTSLDISGNRIGDEGAKSI-- 234
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
SG+ L SLNV N+RI G + + +K L+SL +
Sbjct: 235 -----------------------SGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGG 271
Query: 455 CKV------TANDIKRLQSRDLPN 472
++ + +++K+L S D+ N
Sbjct: 272 NRIGDEEAKSISEMKQLTSLDISN 295
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
Y + D+ I S+ + L S+D+SG+ + D G + + L SLD F QI + G +
Sbjct: 151 YNQIGDEGAKSI-SEMNQLTSLDISGNQIGDEGAKSIIEVKQLTSLDIYFN-QIGEEGAK 208
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ G++ LTSL N I +G K+ +G+ L L++ G ++ + +L+SL
Sbjct: 209 FISGMNQLTSLDI-SGNRIGDEGAKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSL 267
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
NI N I D + K +S + L SL IS +++ D
Sbjct: 268 NI-GGNRIGDEEAKSISEMKQLTSLDISNNRIGD 300
>gi|17548893|ref|NP_522233.1| GALA protein [Ralstonia solanacearum GMI1000]
Length = 981
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 188/409 (45%), Gaps = 9/409 (2%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL +L L SLD + I + G + L ++LTSL+
Sbjct: 578 SVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNLS 635
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L LD+ + G L G L SL ++ I D ++
Sbjct: 636 -GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELR-DTGIEDGGIE 693
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ T L+SL IS + ++D A L + LT L GC +T L+ + SL L
Sbjct: 694 ALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLE 753
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + D G ++ SL+ LNL N IT + L L L+SL++ G GD G +
Sbjct: 754 VGSNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSLDVSRIGCGDRGAL 813
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+G L S+ L F +S R+LA +L SL+L I AL + L L+
Sbjct: 814 LLSGNRALTSLKLGFNRVSSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLN 873
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ R+ D+ A L + L SL++ L+ + + + L L +S N ++ +
Sbjct: 874 VSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALANNPVLASLYISHN-DIGPEGA 932
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+ ++ L L+ +RI AG R L+ +R T ++ A D+
Sbjct: 933 QALADSASLTFLDARANRIGEAGARLLEANTRMRG-TPQNPHFLAQDVP 980
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 3/211 (1%)
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
+++ L +L L L SL+L GIG+ G L +L S+NLS GI L
Sbjct: 592 VSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAASASLTSLNLSGNGIGTAGAEALGRN 650
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
+ L +L++ A I + G AL LT L+L I D G L LRSL+I G
Sbjct: 651 TVLTALDISANPIRNAGAQALAGSRSLTSLELRDTGIEDGGIEALAANTVLRSLDISGND 710
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
L+D + +LT L + C LT+ + ++ + L +L V ++ I AG+ +
Sbjct: 711 LSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLARIRSLRTLEVGSNSIGDAGVLTIAR 769
Query: 444 LKNLRSLTLESCKVTANDIKRLQ-SRDLPNL 473
+LRSL L +T + L SR L +L
Sbjct: 770 NASLRSLNLSRNPITPQGLYPLALSRTLKSL 800
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 129/310 (41%), Gaps = 47/310 (15%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D + LSGL + L+ +LKG TL +L+ P T L
Sbjct: 40 DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 75
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKV--LNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+L+L+ C S + + L + LN+ EI D L +L+SLN S GI
Sbjct: 76 HLDLSECTGSAKSFRAIAYLAGLPLESLNVAGAEIGDGGARLLAANPSLKSLNAASGGIS 135
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
G L LES++L+ I D + LAG SL+ L + +TD G AL
Sbjct: 136 ASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLRHLAVRNGLVTDLGTRALALNPA 195
Query: 350 LTHLDL------------------FGARITDSGAAYLRNFKNLRSLEICGGGL-TDAGVK 390
L LDL IT GA L ++L+SL + G L D GV+
Sbjct: 196 LVSLDLGNLVTETGNQVEQDGYDKTANNITAQGAWALAQNRSLKSLSVQGNDLCGDDGVR 255
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRS 449
+ +LT LN++ N+T + + ++ L SL+V N + AG L ++L S
Sbjct: 256 ALARNRTLTSLNVAF-TNMTSASAKALADNPVLTSLSVRWNYGLDDAGAMELAMSRSLTS 314
Query: 450 LTLESCKVTA 459
L ++A
Sbjct: 315 LDARDTGMSA 324
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 95/213 (44%), Gaps = 21/213 (9%)
Query: 270 VHLKG----------LTNLESLNLDSC---GIGDEGLVNLTGLTNLESINLSFTGISDGS 316
VHLKG T L L+L C + L GL LES+N++ I DG
Sbjct: 56 VHLKGDFTLADLKALPTTLRHLDLSECTGSAKSFRAIAYLAGLP-LESLNVAGAEIGDGG 114
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
R LA SLKSLN + I+ +G L L LDL I D+GA L ++LR
Sbjct: 115 ARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLRH 174
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L + G +TD G + + +L L+L T +E + + + IT+
Sbjct: 175 LAVRNGLVTDLGTRALALNPALVSLDLGNLVTETGNQVEQD-------GYDKTANNITAQ 227
Query: 437 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 469
G L ++L+SL+++ + +D R +R+
Sbjct: 228 GAWALAQNRSLKSLSVQGNDLCGDDGVRALARN 260
>gi|290997297|ref|XP_002681218.1| leucine-rich repeat ribonuclease inhibitor family protein
[Naegleria gruberi]
gi|284094841|gb|EFC48474.1| leucine-rich repeat ribonuclease inhibitor family protein
[Naegleria gruberi]
Length = 342
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 110/218 (50%), Gaps = 1/218 (0%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ + L LN+ ++ D+G + S++ L LN+ NEI DE + + L SL++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
IGDEG ++ + L S+N+ +T I + ++ + L LN+ I G
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKF 243
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT LD+ I GA ++ K L SL I + D G K I ++ LT LN+
Sbjct: 244 ISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNI 303
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
S N D+ + IS + L SL++SN+RI G +++
Sbjct: 304 SYNIT-GDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 108/215 (50%), Gaps = 1/215 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI+ N I D K +S + L SL I +++ D G ++ +++LT L++ G
Sbjct: 127 MKQLTSLNIR-GNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDIRG 185
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L LN+ + +G + S++ L +LN+ +N I E +
Sbjct: 186 NRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKFIS 245
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L L++ + IG EG ++ + L S+N+++ I D + ++ + L SLN+
Sbjct: 246 EMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNISY 305
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
D G ++ + LT LD+ RI D GA Y+
Sbjct: 306 NITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 1/157 (0%)
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+T + L S+N+ I D + ++ + L SLN+ +I D G ++ + LT LD+
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
G RI D GA Y+ K L SL I + G K I ++ LTLLN+ N + + +
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNL-IGIEGAK 242
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
IS + L L++SN+ I G + + +K L SL +
Sbjct: 243 FISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNI 279
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 104/217 (47%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
++ + L SL I +++ D G Y+ +++LT LN+ + +S + L L++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ D+G + S++ L LN+ + I E + + L LN+ IG EG
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKF 243
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
++ + L +++S I + ++ + L SLN++ +I D G ++ + LT L++
Sbjct: 244 ISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNI 303
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
D GA ++ K L SL+I + D G K+I
Sbjct: 304 SYNITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 4/201 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL 151
+I D G +++ + LTSL+ R N I +G K + + L LD+ R RI G +
Sbjct: 139 RIGDEGAKYISEMKQLTSLNIRE-NEIGDEGAKFISEMKQLTSLDI-RGNRIGDEGAKYI 196
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+ +L SLNI + I K +S + L L I + + G ++ +++LTLL++
Sbjct: 197 SEMKQLTSLNI-YYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKFISEMKQLTLLDI 255
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+ +S + L LN+N ++ D G + S++ L LN+ +N D
Sbjct: 256 SNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNISYNITGDRGAKF 315
Query: 272 LKGLTNLESLNLDSCGIGDEG 292
+ + L SL++ + I DEG
Sbjct: 316 ISEMKQLTSLDISNNRICDEG 336
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ G+ + D G ++ + L SL+ + + I G + + + LT L+
Sbjct: 173 SEMKQLTSLDIRGNRIGDEGAKYISEMKQLTSLNIYYTL-IGIEGAKFISEMKQLTLLNI 231
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L LD+ G + + +L SLNI + N I D
Sbjct: 232 YY-NLIGIEGAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINY-NEIGDRGA 289
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K +S + L SL IS + D G ++ +++LT L++
Sbjct: 290 KFISEMKQLTSLNISYNITGDRGAKFISEMKQLTSLDI 327
>gi|334119190|ref|ZP_08493277.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
gi|333458661|gb|EGK87278.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
Length = 489
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 169/349 (48%), Gaps = 34/349 (9%)
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
++ L L+NLT L N +K L NL KL L + + ++K L
Sbjct: 99 NDIKPLESLTNLTGLVLSDNQI---NDIKPLESLTNLTKLYLG-----NNKIKDIKPLQS 150
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L +L + SD+KPL LTNL L +S +K D I L+ L LT L L+ +
Sbjct: 151 LTNLTQLGLHNTRISDIKPLQSLTNLTKLDLSNNKTLD--IKPLQSLTNLTKLYLDNNKI 208
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+ L +L +L +L L Q+ D + + +L L+L N+I+D + L+ LT
Sbjct: 209 KD--IKPLESLTNLTHLQLMSNQIKD--IKPLESLTNLTSLHLYNNQISD--IKPLESLT 262
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L L LD+ I D + L LTNL I L ISD ++ L L++L SL L QI
Sbjct: 263 KLTWLWLDNNKISD--IKPLKSLTNLTEIKLGSNKISD--IKPLESLTNLTSLYLHNNQI 318
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
+D + L SLT LT L L +I+D L + NL + + ++D +K ++ L+
Sbjct: 319 SD--IKPLESLTKLTSLWLINNQISDIKP--LESLTNLTGIVLSNNRISD--IKPLESLN 372
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
LTLL L+ N K LE ++ LTG+V + S ++ +KPL+
Sbjct: 373 KLTLLALTNNQISDIKPLESLTNLTGIV--------LMSNQIQDIKPLQ 413
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 167/338 (49%), Gaps = 49/338 (14%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
KL S+ + N +D+KPL LTNL L +S +++ D I L+ L LT L L
Sbjct: 81 AYQKLSSIEELYLNDKKINDIKPLESLTNLTGLVLSDNQIND--IKPLESLTNLTKLYLG 138
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ + L +L +L L L+ ++SD + + +L L+L N+ D + L
Sbjct: 139 NNKIKD--IKPLQSLTNLTQLGLHNTRISD--IKPLQSLTNLTKLDLSNNKTLD--IKPL 192
Query: 273 KGLTNLESLNLDSCGIGD----EGLVNLT----------------GLTNLESINLSFTGI 312
+ LTNL L LD+ I D E L NLT LTNL S++L I
Sbjct: 193 QSLTNLTKLYLDNNKIKDIKPLESLTNLTHLQLMSNQIKDIKPLESLTNLTSLHLYNNQI 252
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
SD ++ L L+ L L LD +I+D + L SLT LT + L +I+D L +
Sbjct: 253 SD--IKPLESLTKLTWLWLDNNKISD--IKPLKSLTNLTEIKLGSNKISDIKP--LESLT 306
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
NL SL + ++D +K ++ L+ LT L L N K LE ++ LTG+V +SN+R
Sbjct: 307 NLTSLYLHNNQISD--IKPLESLTKLTSLWLINNQISDIKPLESLTNLTGIV---LSNNR 361
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVTAN---DIKRLQS 467
I+ +KPL++L LTL +T N DIK L+S
Sbjct: 362 ISD-----IKPLESLNKLTL--LALTNNQISDIKPLES 392
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 125/285 (43%), Gaps = 65/285 (22%)
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
D LQSL + + + ++ ++ L +LT+L+ + + + +K L NL L L
Sbjct: 188 DIKPLQSLTNLTKLYLDNNKIKDIKPLESLTNLTHLQLMSNQIKDIKPLESLTNLTSLHL 247
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ + ++K L L L W + SD+KPL LTNL +++ +K++D
Sbjct: 248 -----YNNQISDIKPLESLTKLTWLWLDNNKISDIKPLKSLTNLTEIKLGSNKISD---- 298
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVL 257
L+SL+ L SL+ L+ Q+SD E +K+ SL ++
Sbjct: 299 -------------------IKPLESLTNLTSLY---LHNNQISDIKPLESLTKLTSLWLI 336
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSL 317
N N+I+D +K L E L NLTG+ LS ISD +
Sbjct: 337 N---NQISD-----IKPL---------------ESLTNLTGIV------LSNNRISD--I 365
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
+ L L+ L L L QI+D + L SLT LT + L +I D
Sbjct: 366 KPLESLNKLTLLALTNNQISD--IKPLESLTNLTGIVLMSNQIQD 408
>gi|198432493|ref|XP_002130800.1| PREDICTED: similar to F-box and leucine-rich repeat protein 13
[Ciona intestinalis]
Length = 798
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 136/485 (28%), Positives = 207/485 (42%), Gaps = 97/485 (20%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFC 91
+QDL + GVND+ M IA +LL +++S +++TD L L C N+Q L +C
Sbjct: 321 VQDLNFSECKGVNDEVMRTIAESCPTLLYLNISHTEITDGTLRTLSRCCLNMQYLSLAYC 380
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
+ +D GL ++ +G LT + F ITAQG + A
Sbjct: 381 SKYTDRGLHYMASGKGCRKLTYIDFSGCLQITAQGFRHVA-------------------- 420
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKL 206
G L+S+ + +TDS + L TNL+S+ I +TD L +KL
Sbjct: 421 ---HGCTSLQSIVLNDMPSLTDSCIISLVEKCTNLRSVSLIGSPNLTDMAFKALAQAKKL 477
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK----IGSLKVLNLGFN 262
L +E N N ++D+ + K IG V++
Sbjct: 478 QKLRIES--------------------NQN---ITDNTFKTLGKMCPYIGHFYVVDC--Q 512
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEG---LVNLTGLTNLESINLS-FTGISDGSL 317
+TD L L L ++ LNL C I D G +V + + +NL+ +SD SL
Sbjct: 513 RLTDMMLKALSPLRSIIVLNLADCVRISDSGVRQMVEGPSGSKIREMNLTNCVRVSDVSL 572
Query: 318 RKLAG-LSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
++A SL L L +TD G+ L S+ L H+DL G I D G A L +R
Sbjct: 573 LRVAQRCHSLTHLCLCFCEHVTDAGIELLGSMPALLHVDLSGTNIKDQGLASLGVNSRIR 632
Query: 376 SLEICG-GGLTDAG---------------VKHIKDLSSLTLLNLSQNCN----------- 408
S+ + G+TD G V H LS + NL+ C
Sbjct: 633 SVVMSECQGITDLGLQKFCQKVTELDTLDVSHCMSLSDAAIKNLAFCCRMLTSLNVAGCP 692
Query: 409 -LTDKTLELISGLTGLVS-LNVSNS-RITSAGLRHL-KPLKNLRSLTLESCK-VTANDIK 463
LTD +++ +SG+ + LN+S I+ +++L K K LRSLT+ C+ +T +
Sbjct: 693 LLTDLSIQYLSGVCHYIHFLNLSGCIHISDRAVKYLRKGCKQLRSLTILYCRSITKITAQ 752
Query: 464 RLQSR 468
RL SR
Sbjct: 753 RLASR 757
>gi|18378037|emb|CAD21749.1| hypothetical leucine-rich repeat protein 1, LRRP1 [Trypanosoma
brucei]
Length = 1394
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 141/509 (27%), Positives = 210/509 (41%), Gaps = 82/509 (16%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L L + +TD + H +C NL +LD +FC
Sbjct: 556 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILPNTHITDRDISHFSNCKNLVTLDLSFC 613
Query: 92 IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G+ +I
Sbjct: 614 NKLLD-----VTTLSNITTLEDLNLDNCSNIRKGLSVLGELPRLCVLNIKGVHLKDSVIG 668
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ VKL LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 669 SLGNGNSFVKLSLENC-KGFGDVKPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVL 726
Query: 186 QI--------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 218
+ C K+T S IA L L++L N++ C
Sbjct: 727 DLGRTQVDNNSLENICTSSSPLVSLNLSHCKKITSISAIASLTALEEL---NIDNCCNVT 783
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 277
+ + L L L+ +++D+ S+ SL LNL F +ITD + L +T
Sbjct: 784 SGWNVFGTLHQLRVATLSNTRINDENVRHVSECKSLNTLNLAFCKDITD--VTALSKITM 841
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDAR 334
LE LNLD C +G+ L L +++ I D ++ L SL LNL+ R
Sbjct: 842 LEELNLDCCPNIRKGIETLGTLPKARILSMKECQIGDSDAQQCSILGNSKSLVKLNLE-R 900
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKH 391
+ AL+++ L L L A+ + +F L L + TD K+
Sbjct: 901 SRGRISVKALSNIATLEELVLDHAQ----EVCCIPSFSCLPHLRVLNVKYTDINGDVTKN 956
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
I + SL LLNLS +TD + ++S L+ L LNV G L L LR
Sbjct: 957 ISESKSLRLLNLSHCKWVTD--ISVLSSLSTLEKLNVKCCNGIRKGWESLGKLPLLRVAI 1014
Query: 452 LESCKVTANDIKRLQS-RDLPNLVSFRPE 479
L +TA DI L S + L L FR E
Sbjct: 1015 LSDTNITAKDIACLSSCKTLVKLKFFRCE 1043
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 114/431 (26%), Positives = 189/431 (43%), Gaps = 59/431 (13%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL+ LDL + +
Sbjct: 189 IDNNDARHLFNIGTLEKLAITDTMQLT--NIRGISRLTNLMCLDLNSTNIDDSCVRRICA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
+KL L++ CN ITD+ P+S L L+ L + SC +T GI L L +L +L+L
Sbjct: 247 CVKLSKLSVSECNNITDA--TPISQLEALEELNLNSCYHIT-KGIGTLGMLLRLRILDLS 303
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------ 250
G PV CL L GSL LN++ C QL D +GC + ++
Sbjct: 304 GVPVEDNCLKGLCDCGSLERLNISYCIQLKDINPLSNATATEELNLNGCRRITRGIGVVW 363
Query: 251 -IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS 308
+ L+VL++ +++ L + L ++LD+C G GD L L+ + LE +N+
Sbjct: 364 ALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQ 421
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITD---TGLAA--------LTSLTGLTHLD--- 354
+ L L L+ LN+ I+ TG+ A + S+TGL++++
Sbjct: 422 KCADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSNVEALA 481
Query: 355 ---------LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L G D+G L N L+ L++ G + ++ + ++ LNLS
Sbjct: 482 NILTLEKLSLHGCTDIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTMVSLNLSH 541
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T+ + IS L L LN+SN +AG ++ L+ L L + +T DI
Sbjct: 542 CWKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILPNTHITDRDISHF 599
Query: 466 QSRDLPNLVSF 476
+ NLV+
Sbjct: 600 S--NCKNLVTL 608
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 99/346 (28%), Positives = 159/346 (45%), Gaps = 12/346 (3%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ + L L KL+++ C I G +L G + L + I IT D+ LS L
Sbjct: 977 ISVLSSLSTLEKLNVKCCNGIRKGWESL-GKLPLLRVAILSDTNITAKDIACLSSCKTLV 1035
Query: 184 SLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L+ C K++D + Y +Q L L + C L++L L L +L+L + SD
Sbjct: 1036 KLKFFRCEKLSDVTVVY--KIQSLEELMVRSCSDGLKGLNALGTLPRLRFLHLRNLKGSD 1093
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
E SL LN+ E+T+ L +T+LE L+L CG EG+ L L
Sbjct: 1094 ISVESIGTSKSLVRLNIEMREELTNA--TPLSNITSLEELSLRDCGDNLEGVGTLGKLPR 1151
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L+S++L + ISD +L + S+ SLNL A T ++ +++LT L ++L G
Sbjct: 1152 LKSLDLGLSRISDDTLDDICLSRSITSLNL-ASSWKLTDISHISNLTALEEMNLSGCYPI 1210
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
+SG L LR + + +T +I L LN+ Q ++TD + I+ +
Sbjct: 1211 NSGWKALSELPRLRVVNLESASVTTRYDGYYISRCKYLVTLNI-QLSDMTDAS--YIANI 1267
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
L L + S+ + G L L LR L L ++T D++ +Q
Sbjct: 1268 KTLEELRIGKSKELTQGFSALFTLPRLRILDLFMSRITDEDLREIQ 1313
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/406 (25%), Positives = 179/406 (44%), Gaps = 38/406 (9%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLSG++ + L L + SL+ + C ++++ + H+ L L L+ I A
Sbjct: 513 LDLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINA 570
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G +A L L L + + L +L++ +CN + D + LS +T
Sbjct: 571 -GWEAIEKLQQLHVAILPNTHITDRDISHFSNCKNLVTLDLSFCNKLLD--VTTLSNITT 627
Query: 182 LKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L+ L + +CS + G++ L L +L +LN++G + + + SL S L+L C+
Sbjct: 628 LEDLNLDNCSNIR-KGLSVLGELPRLCVLNIKGVHLKDSVIGSLGNGNSFVKLSLENCK- 685
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
GF ++ L L LE LNL C G+ L L
Sbjct: 686 -------------------GFGDVKP-----LSNLVTLEELNLHYCDKVTSGMGTLGRLL 721
Query: 301 NLESINLSFTGISDGSLRKLAGLSS-LKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGA 358
L ++L T + + SL + SS L SLNL ++IT ++A+ SLT L L++
Sbjct: 722 QLRVLDLGRTQVDNNSLENICTSSSPLVSLNLSHCKKIT--SISAIASLTALEELNIDNC 779
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
SG LR + + D V+H+ + SL LNL+ ++TD T +S
Sbjct: 780 CNVTSGWNVFGTLHQLRVATLSNTRINDENVRHVSECKSLNTLNLAFCKDITDVT--ALS 837
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+T L LN+ G+ L L R L+++ C++ +D ++
Sbjct: 838 KITMLEELNLDCCPNIRKGIETLGTLPKARILSMKECQIGDSDAQQ 883
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 111/415 (26%), Positives = 173/415 (41%), Gaps = 54/415 (13%)
Query: 37 CLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFN 89
CL +N K+ D+ S+ SL ++LS VTD + L S L+ L+
Sbjct: 935 CLPHLRVLNVKYTDINGDVTKNISESKSLRLLNLSHCKWVTDISV--LSSLSTLEKLNVK 992
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C I G E L L L ++ + ITA+ + + LVKL RC ++ V
Sbjct: 993 CCNGIRKG-WESLGKLP-LLRVAILSDTNITAKDIACLSSCKTLVKLKFFRCEKLSDVTV 1050
Query: 150 NLKGLMKLESLNIKWCNCITDSD----MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
K + LE L ++ C SD + L L L+ L + K +D + + +
Sbjct: 1051 VYK-IQSLEELMVRSC-----SDGLKGLNALGTLPRLRFLHLRNLKGSDISVESIGTSKS 1104
Query: 206 LTLLNLE-GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
L LN+E +T A LS + SL L+L C + +G K+ LK L+LG + I
Sbjct: 1105 LVRLNIEMREELTNA--TPLSNITSLEELSLRDCGDNLEGVGTLGKLPRLKSLDLGLSRI 1162
Query: 265 TDECL-----------------------VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
+D+ L H+ LT LE +NL C + G L+ L
Sbjct: 1163 SDDTLDDICLSRSITSLNLASSWKLTDISHISNLTALEEMNLSGCYPINSGWKALSELPR 1222
Query: 302 LESINL---SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L +NL S T DG ++ L +LN+ +TD A ++ L L + +
Sbjct: 1223 LRVVNLESASVTTRYDGYY--ISRCKYLVTLNIQLSDMTDASYIA--NIKTLEELRIGKS 1278
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
+ G + L LR L++ +TD ++ I+ ++ LNLS L D T
Sbjct: 1279 KELTQGFSALFTLPRLRILDLFMSRITDEDLREIQPPHTIEELNLSYCEELNDIT 1333
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 102/409 (24%), Positives = 178/409 (43%), Gaps = 26/409 (6%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
+L ++L D SG+ L L+ LD Q+ + LE++ S L SL+
Sbjct: 698 TLEELNLHYCDKVTSGMGTLGRLLQLRVLDLGR-TQVDNNSLENICTSSSPLVSLNLSHC 756
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT+ + A A L L +L+++ C + G L +L + I D +++ +
Sbjct: 757 KKITS--ISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTR-INDENVRHV 813
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S +L +L ++ C +TD + L + L LNL+ CP +++L L L++
Sbjct: 814 SECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGTLPKARILSM 871
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN---LESLNLDS----CGI 288
CQ+ D ++ S +G+ K L + N + +K L+N LE L LD C I
Sbjct: 872 KECQIGDSDAQQCSILGNSKSL-VKLNLERSRGRISVKALSNIATLEELVLDHAQEVCCI 930
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSL 347
+ + L +L +N+ +T I+ + ++ SL+ LNL + +TD ++ L+SL
Sbjct: 931 P-----SFSCLPHLRVLNVKYTDINGDVTKNISESKSLRLLNLSHCKWVTD--ISVLSSL 983
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ L L++ G L LR + +T + + +L L +
Sbjct: 984 STLEKLNVKCCNGIRKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKTLVKLKFFRCE 1043
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
L+D T ++ + L L V + GL L L LR L L + K
Sbjct: 1044 KLSDVT--VVYKIQSLEELMVRSCSDGLKGLNALGTLPRLRFLHLRNLK 1090
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 35/224 (15%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+SLD +ISD L+ + ++TSL+ + +T + + L L +++L C
Sbjct: 1152 LKSLDLGLS-RISDDTLDDICLSRSITSLNLASSWKLT--DISHISNLTALEEMNLSGCY 1208
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLK 201
I+ G L L +L +N++ + T D +S L +L I S +TD S IA +K
Sbjct: 1209 PINSGWKALSELPRLRVVNLESASVTTRYDGYYISRCKYLVTLNIQLSDMTDASYIANIK 1268
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
L++L + + +LF L L++L+L
Sbjct: 1269 TLEELRI---------GKSKELTQGFSALFTL------------------PRLRILDLFM 1301
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
+ ITDE L ++ +E LNL C E L ++T L ++SI
Sbjct: 1302 SRITDEDLREIQPPHTIEELNLSYC----EELNDITPLGRIKSI 1341
>gi|406831323|ref|ZP_11090917.1| hypothetical protein SpalD1_06790 [Schlesneria paludicola DSM
18645]
Length = 539
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 21/242 (8%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGF-----NEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
Q + +G SK+ +L+ L+ F NE+ D L + + +L LNL CG+ DEGL
Sbjct: 197 QFTVEGLSHLSKLTNLERLSASFSSQSANELGDATLRSISEIESLRELNLSECGVTDEGL 256
Query: 294 VNLTGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDAR--------QITDTGLAAL 344
+L L NL +++ G ++D +L +A L LK L L +++ L
Sbjct: 257 KSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHLKVLTLTTHVGTPLGRMHFSESATNQL 316
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
+LT L HLDL G ++ L NF L+SL I D K I LT L++S
Sbjct: 317 IALTELEHLDLSGHDVSTD----LLNFPRLKSLRINRNQFDDDLAKAIAKCRELTHLDVS 372
Query: 405 QNCN-LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
C+ +TD LE + L L L++ I+ + HLK NL S+TL + ++T ++
Sbjct: 373 --CSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHLKLFPNLASVTLHTAELTDKSLE 430
Query: 464 RL 465
L
Sbjct: 431 YL 432
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 164/364 (45%), Gaps = 19/364 (5%)
Query: 24 SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
+++A ++ A Q L + + + + + +++S+ G + D L S L
Sbjct: 129 TMKAVKERAKQRLPKWIHEYFDSPKLRIFSDDDGNVVSLSDYGV-LNDKALAKFSVLSTL 187
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNL----TSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
+ + F Q + GL HL L+NL S S + N + +++ + + +L +L+L
Sbjct: 188 RGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGDATLRSISEIESLRELNLS 247
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS--------K 191
C GL +L+ L L L+I +TD+ + ++ L +LK L ++
Sbjct: 248 ECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHLKVLTLTTHVGTPLGRMH 307
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
++S L L +L L+L G V+ L+ L L +NR Q DD + +K
Sbjct: 308 FSESATNQLIALTELEHLDLSGHDVSTDLLN----FPRLKSLRINRNQFDDDLAKAIAKC 363
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
L L++ +E+TD L HL+ L +L L++ + I D + +L NL S+ L
Sbjct: 364 RELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHLKLFPNLASVTLHTAE 423
Query: 312 ISDGSLRKLAGLSSLKSLNLD--ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
++D SL L+ +SL L+L+ + GL L +L L L+L G +R
Sbjct: 424 LTDKSLEYLSQTASLTKLDLNWATNHFSRHGLEQLANLPNLETLELRIIPFQGGGLKLIR 483
Query: 370 NFKN 373
+ K
Sbjct: 484 DAKE 487
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 148/326 (45%), Gaps = 25/326 (7%)
Query: 147 GLVNLKGLMK------LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-----KVTDS 195
G++N K L K L + + T + LS LTNL+ L S S ++ D+
Sbjct: 171 GVLNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGDA 230
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSL 254
+ + ++ L LNL C VT L SL L +L +L++ +L+D +K+ L
Sbjct: 231 TLRSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHL 290
Query: 255 KVLNL--------GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN 306
KVL L G ++ L LT LE L+L G + +L L+S+
Sbjct: 291 KVLTLTTHVGTPLGRMHFSESATNQLIALTELEHLDLS----GHDVSTDLLNFPRLKSLR 346
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
++ D + +A L L++ ++TDT L L L LT L + I+D+ A
Sbjct: 347 INRNQFDDDLAKAIAKCRELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIA 406
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVS 425
+L+ F NL S+ + LTD ++++ +SLT L+L+ N + LE ++ L L +
Sbjct: 407 HLKLFPNLASVTLHTAELTDKSLEYLSQTASLTKLDLNWATNHFSRHGLEQLANLPNLET 466
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLT 451
L + GL+ ++ K LT
Sbjct: 467 LELRIIPFQGGGLKLIRDAKEPEILT 492
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 118/249 (47%), Gaps = 36/249 (14%)
Query: 261 FNEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLTNLESINLSFTGIS-----D 314
+ + D+ L L+ L + + + EGL +L+ LTNLE ++ SF+ S D
Sbjct: 170 YGVLNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGD 229
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKN 373
+LR ++ + SL+ LNL +TD GL +L L LTHL ++ R+TD+ + + K+
Sbjct: 230 ATLRSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKH 289
Query: 374 LRSLEICGGGLTDAGVKHIKD--------LSSLTLLNLSQNCNLTD-------KTLEL-- 416
L+ L + T G H + L+ L L+LS + TD K+L +
Sbjct: 290 LKVLTLTTHVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTDLLNFPRLKSLRINR 349
Query: 417 ----------ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
I+ L L+VS S +T L HL+PL +L L + + +++ N I L+
Sbjct: 350 NQFDDDLAKAIAKCRELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHLK 409
Query: 467 SRDLPNLVS 475
PNL S
Sbjct: 410 L--FPNLAS 416
>gi|428317664|ref|YP_007115546.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
gi|428241344|gb|AFZ07130.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
Length = 782
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 165/335 (49%), Gaps = 40/335 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++L + +TD + L +NL L+ N QI+D + L GL+NLT LS N
Sbjct: 97 TNLTYLNLESNQITD--ITPLSALTNLTYLNLNHN-QITD--ITPLSGLTNLTILSLEYN 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMK 174
G+ A L +L L + T I G GL NL + SLN N ITD +
Sbjct: 152 QITDITGLSALTNLTDLC-LGCNQITDITGLLGLTNLTRV----SLN---NNEITD--VT 201
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
PLS LTNL L I ++TD I+ L L LT L++ + + L +L+ L LF
Sbjct: 202 PLSALTNLTKLGIENQEITD--ISPLSALTNLTELSISDGIIDISPLSALTNLTELFI-- 257
Query: 235 LNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+G S + + L L++ +N+ E + L LTNL SL I D
Sbjct: 258 -------SEGITDISPLSALTNLTKLSIIYNDTITE-ISPLSALTNLTSLYFLYTQITD- 308
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
+ L+ LTNL + LS I+D + L+ L++L LNL QITD +AAL++LT LT
Sbjct: 309 -ITALSALTNLTYLYLSDNQITD--ITALSALTNLTYLNLSNNQITD--IAALSALTNLT 363
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+L+L +ITD A L NL L + +TD
Sbjct: 364 YLNLSNNQITDITA--LSALTNLTELHLETNQITD 396
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 166/353 (47%), Gaps = 58/353 (16%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
H + N L L +L + +D+ LS LTNL L + +++TD I L L
Sbjct: 62 HRSITNFTSLSALTNLTALYLQGSQINDIASLSALTNLTYLNLESNQITD--ITPLSALT 119
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD--------------GCEKFSK 250
LT LNL +T + LS L +L L+L Q++D GC + +
Sbjct: 120 NLTYLNLNHNQITD--ITPLSGLTNLTILSLEYNQITDITGLSALTNLTDLCLGCNQITD 177
Query: 251 I------GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLT--- 297
I +L ++L NEITD + L LTNL L +++ I D L NLT
Sbjct: 178 ITGLLGLTNLTRVSLNNNEITD--VTPLSALTNLTKLGIENQEITDISPLSALTNLTELS 235
Query: 298 ------------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
LTNL + +S GI+D + L+ L++L L++ T T ++ L+
Sbjct: 236 ISDGIIDISPLSALTNLTELFIS-EGITD--ISPLSALTNLTKLSIIYND-TITEISPLS 291
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
+LT LT L +ITD A L NL L + +TD + + L++LT LNLS
Sbjct: 292 ALTNLTSLYFLYTQITDITA--LSALTNLTYLYLSDNQITD--ITALSALTNLTYLNLSN 347
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
N +TD + +S LT L LN+SN++IT + L L NL L LE+ ++T
Sbjct: 348 N-QITD--IAALSALTNLTYLNLSNNQIT--DITALSALTNLTELHLETNQIT 395
>gi|414076287|ref|YP_006995605.1| hypothetical protein ANA_C11003 [Anabaena sp. 90]
gi|413969703|gb|AFW93792.1| leucine-rich repeat-containing protein [Anabaena sp. 90]
Length = 474
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 151/274 (55%), Gaps = 26/274 (9%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+KPLS LT L SL +S +K++D I L L KLT L L ++ + SLS L L
Sbjct: 98 SDIKPLSNLTKLTSLGLSKNKISD--IKSLSNLTKLTSLGLSKNKISD--IKSLSNLTKL 153
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L+L Q+SD S + L L+L N+I+D + L LTNL LNL I D
Sbjct: 154 TKLDLVGNQISD--TTPLSNLTKLTSLDLWGNQISD--IKPLSNLTNLTFLNLVGNKISD 209
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+ L+ LT L S+ LS ISD ++ L+ ++L L+L QI+DT L++LT L
Sbjct: 210 --IKPLSNLTKLTSLGLSKNKISD--IKSLSNFTNLTKLDLVGNQISDT--TPLSNLTKL 263
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T LDL+G +I+D L N NL L + G + + +K + +L++LT L LS N ++
Sbjct: 264 TSLDLWGNQISD--IKPLSNLTNLTFLILWGNQI--SNIKPLSNLTNLTSLTLSLN-QIS 318
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
D ++ +S LT L L++ ++I+ +KPL
Sbjct: 319 D--IKPLSNLTNLTYLDLWGNKIS-----DIKPL 345
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 137/437 (31%), Positives = 212/437 (48%), Gaps = 84/437 (19%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN---LTS 110
SQ + +L+ +L+ ++++ + +K SNL L + +S + ++ LSN LTS
Sbjct: 78 SQANQILT-NLTSLGLSENKISDIKPLSNLTKLT---SLGLSKNKISDIKSLSNLTKLTS 133
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
L +N +K+ + L L KLDL L L KL SL++ W N I
Sbjct: 134 LGLSKNK---ISDIKSLSNLTKLTKLDL--VGNQISDTTPLSNLTKLTSLDL-WGNQI-- 185
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+KPLS LTNL L + +K++D I L L KLT +LG
Sbjct: 186 SDIKPLSNLTNLTFLNLVGNKISD--IKPLSNLTKLT------------------SLG-- 223
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L++ ++SD + S +L L+L N+I+D L LT L SL+L I D
Sbjct: 224 ----LSKNKISD--IKSLSNFTNLTKLDLVGNQISDTT--PLSNLTKLTSLDLWGNQISD 275
Query: 291 -EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
+ L NLT LT L G +++ L+ L++L SL L QI+D + L++LT
Sbjct: 276 IKPLSNLTNLT-----FLILWGNQISNIKPLSNLTNLTSLTLSLNQISD--IKPLSNLTN 328
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD--------------------AGV 389
LT+LDL+G +I+D L N NL L + ++D + +
Sbjct: 329 LTYLDLWGNKISD--IKPLSNLTNLTYLYLLSNKISDIKPLSNLTNLTLLFLSLNQISDI 386
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
K + L++LT L LS+N ++D ++ +S LT L SL +S ++I+ +KPL NL +
Sbjct: 387 KPLSSLTNLTFLILSKN-QISD--IKPLSNLTNLTSLGLSENKIS-----DIKPLSNLTN 438
Query: 450 LT-LESCKVTANDIKRL 465
LT L + +DIK L
Sbjct: 439 LTYLSLWENPISDIKPL 455
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 168/331 (50%), Gaps = 33/331 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI--QISDGGLEHLRGLSNLTSLSFR 114
+ L S+DL G+ ++D +K SNL +L F + +ISD ++ L L+ LTSL
Sbjct: 173 TKLTSLDLWGNQISD-----IKPLSNLTNLTFLNLVGNKISD--IKPLSNLTKLTSLGLS 225
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+N +K+ + NL KLDL L L KL SL++ W N I SD+K
Sbjct: 226 KNK---ISDIKSLSNFTNLTKLDL--VGNQISDTTPLSNLTKLTSLDL-WGNQI--SDIK 277
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
PLS LTNL L + +++ S I L L LT L L ++ + LS L +L YL+
Sbjct: 278 PLSNLTNLTFLILWGNQI--SNIKPLSNLTNLTSLTLSLNQISD--IKPLSNLTNLTYLD 333
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L ++SD + S + +L L L N+I+D + L LTNL L L I D +
Sbjct: 334 LWGNKISD--IKPLSNLTNLTYLYLLSNKISD--IKPLSNLTNLTLLFLSLNQISD--IK 387
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+ LTNL + LS ISD ++ L+ L++L SL L +I+D + L++LT LT+L
Sbjct: 388 PLSSLTNLTFLILSKNQISD--IKPLSNLTNLTSLGLSENKISD--IKPLSNLTNLTYLS 443
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L+ I+D L N NL L + T
Sbjct: 444 LWENPISD--IKPLSNLTNLTELYLWENPFT 472
>gi|301617436|ref|XP_002938142.1| PREDICTED: f-box/LRR-repeat protein 14-like [Xenopus (Silurana)
tropicalis]
Length = 400
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 107/334 (32%), Positives = 168/334 (50%), Gaps = 39/334 (11%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++GL +ESLN+ C +TD+ + + + +L+SL +S C +VTDS + YLKGL
Sbjct: 86 IQGLPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIAQYLKGL 145
Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
Q +L L GC L L L LNL C+ V ++G
Sbjct: 146 Q---VLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCR---------------HVSDVGI 187
Query: 262 NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLR 318
+ +G LE L L C + D L +++ GL L +NLSF G ISD L
Sbjct: 188 GHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGGISDAGLL 247
Query: 319 KLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKN 373
L+ + L+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 248 HLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLYG 306
Query: 374 LRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN- 430
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++
Sbjct: 307 LKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC 366
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+RIT GL + L L+ L L ++T ++ R
Sbjct: 367 TRITKKGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 141/289 (48%), Gaps = 41/289 (14%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA L ++L G +++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 VTDSSLGRIAQYLKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL------KGLM 155
L G++ A G + L +L L+ C + L +L +GL
Sbjct: 190 LAGMTR-----------------SAAEGCLGLEQLTLQDCQK----LTDLSLKHISRGLQ 228
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEG 213
L LN+ +C I+D+ + LS + L+SL + SC ++D+GI +L G +L+ L++
Sbjct: 229 GLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSF 288
Query: 214 CPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDE 267
C SL+ + Y L+L C +SDDG + + + L+ LN+G ITD+
Sbjct: 289 CDKVGD--QSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDK 346
Query: 268 CLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGISD 314
L + + L+ L ++L C I +GL +T L L+ +NL +++
Sbjct: 347 GLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPCLKVLNLGLWQMTE 395
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 48/241 (19%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--LTGLTNLESINLSF-TGISDGSLRKLA------ 321
++GL ++ESLNL C + D GL + + + +L S+NLS ++D SL ++A
Sbjct: 86 IQGLPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIAQYLKGL 145
Query: 322 ---------------------GLSSLKSLNLDA-RQITDTGLAALTSLT--------GLT 351
GL LKSLNL + R ++D G+ L +T GL
Sbjct: 146 QVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 352 HLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L L ++TD ++ R + LR +L CGG ++DAG+ H+ + L LNL
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGG-ISDAGLLHLSHMGGLRSLNLRSCD 264
Query: 408 NLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKR 464
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I R
Sbjct: 265 NISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGINR 324
Query: 465 L 465
+
Sbjct: 325 M 325
>gi|95108203|emb|CAD17823.3| lrr-gala family type III effector protein (gala 2) [Ralstonia
solanacearum GMI1000]
Length = 1035
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 188/409 (45%), Gaps = 9/409 (2%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL +L L SLD + I + G + L ++LTSL+
Sbjct: 632 SVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNLS 689
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L LD+ + G L G L SL ++ I D ++
Sbjct: 690 -GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELR-DTGIEDGGIE 747
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ T L+SL IS + ++D A L + LT L GC +T L+ + SL L
Sbjct: 748 ALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLE 807
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + D G ++ SL+ LNL N IT + L L L+SL++ G GD G +
Sbjct: 808 VGSNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSLDVSRIGCGDRGAL 867
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+G L S+ L F +S R+LA +L SL+L I AL + L L+
Sbjct: 868 LLSGNRALTSLKLGFNRVSSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLN 927
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ R+ D+ A L + L SL++ L+ + + + L L +S N ++ +
Sbjct: 928 VSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALANNPVLASLYISHN-DIGPEGA 986
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+ ++ L L+ +RI AG R L+ +R T ++ A D+
Sbjct: 987 QALADSASLTFLDARANRIGEAGARLLEANTRMRG-TPQNPHFLAQDVP 1034
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 3/211 (1%)
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
+++ L +L L L SL+L GIG+ G L +L S+NLS GI L
Sbjct: 646 VSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAASASLTSLNLSGNGIGTAGAEALGRN 704
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
+ L +L++ A I + G AL LT L+L I D G L LRSL+I G
Sbjct: 705 TVLTALDISANPIRNAGAQALAGSRSLTSLELRDTGIEDGGIEALAANTVLRSLDISGND 764
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
L+D + +LT L + C LT+ + ++ + L +L V ++ I AG+ +
Sbjct: 765 LSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLARIRSLRTLEVGSNSIGDAGVLTIAR 823
Query: 444 LKNLRSLTLESCKVTANDIKRLQ-SRDLPNL 473
+LRSL L +T + L SR L +L
Sbjct: 824 NASLRSLNLSRNPITPQGLYPLALSRTLKSL 854
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 129/310 (41%), Gaps = 47/310 (15%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D + LSGL + L+ +LKG TL +L+ P T L
Sbjct: 94 DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 129
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKV--LNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+L+L+ C S + + L + LN+ EI D L +L+SLN S GI
Sbjct: 130 HLDLSECTGSAKSFRAIAYLAGLPLESLNVAGAEIGDGGARLLAANPSLKSLNAASGGIS 189
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
G L LES++L+ I D + LAG SL+ L + +TD G AL
Sbjct: 190 ASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLRHLAVRNGLVTDLGTRALALNPA 249
Query: 350 LTHLDL------------------FGARITDSGAAYLRNFKNLRSLEICGGGL-TDAGVK 390
L LDL IT GA L ++L+SL + G L D GV+
Sbjct: 250 LVSLDLGNLVTETGNQVEQDGYDKTANNITAQGAWALAQNRSLKSLSVQGNDLCGDDGVR 309
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRS 449
+ +LT LN++ N+T + + ++ L SL+V N + AG L ++L S
Sbjct: 310 ALARNRTLTSLNVAF-TNMTSASAKALADNPVLTSLSVRWNYGLDDAGAMELAMSRSLTS 368
Query: 450 LTLESCKVTA 459
L ++A
Sbjct: 369 LDARDTGMSA 378
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 95/213 (44%), Gaps = 21/213 (9%)
Query: 270 VHLKG----------LTNLESLNLDSC---GIGDEGLVNLTGLTNLESINLSFTGISDGS 316
VHLKG T L L+L C + L GL LES+N++ I DG
Sbjct: 110 VHLKGDFTLADLKALPTTLRHLDLSECTGSAKSFRAIAYLAGLP-LESLNVAGAEIGDGG 168
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
R LA SLKSLN + I+ +G L L LDL I D+GA L ++LR
Sbjct: 169 ARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLRH 228
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L + G +TD G + + +L L+L T +E + + + IT+
Sbjct: 229 LAVRNGLVTDLGTRALALNPALVSLDLGNLVTETGNQVEQD-------GYDKTANNITAQ 281
Query: 437 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 469
G L ++L+SL+++ + +D R +R+
Sbjct: 282 GAWALAQNRSLKSLSVQGNDLCGDDGVRALARN 314
>gi|403286756|ref|XP_003934642.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Saimiri
boliviensis boliviensis]
Length = 349
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 182/378 (48%), Gaps = 67/378 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 16 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 69
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 70 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 127
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 128 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 148
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
+LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 149 CLSLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 208
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 209 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 267
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 268 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 327
Query: 444 LKNLRSLTLESCKVTAND 461
L L+ L L ++T ++
Sbjct: 328 LPCLKVLNLGLWQMTDSE 345
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 176/335 (52%), Gaps = 48/335 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 34 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 93
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +L+
Sbjct: 94 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLSLE 153
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 154 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 213
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 214 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 272
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 273 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 309
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
DL+G RIT G + L+ L + +TD+
Sbjct: 310 DLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 344
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 163 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 222
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 223 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 282
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 283 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 319
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 320 RGLERITQLPCLKVLNLGLWQMTD 343
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 131/262 (50%), Gaps = 42/262 (16%)
Query: 224 LSALGSLFYLNLNRC-QLSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
+ + ++ LNL+ C L+D+G +IGSL+ LNL +ITD L + + L L
Sbjct: 34 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 93
Query: 279 ESLNLDSCG-IGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLAGLS--------SLK 327
E L L C I + GL+ + GL L+S+NL S +SD + LAG++ SL+
Sbjct: 94 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLSLE 153
Query: 328 SLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
L L D +++TD L ++ GLT L L +L CGG ++D
Sbjct: 154 QLTLQDCQKLTDLSLKHISR--GLTGLRLL-------------------NLSFCGG-ISD 191
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KP 443
AG+ H+ + SL LNL N++D + L G L L+VS ++ L ++ +
Sbjct: 192 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQG 251
Query: 444 LKNLRSLTLESCKVTANDIKRL 465
L L+SL+L SC ++ + I R+
Sbjct: 252 LDGLKSLSLCSCHISDDGINRM 273
>gi|148228501|ref|NP_001083845.1| F-box and leucine-rich repeat protein 14 [Xenopus laevis]
gi|50603939|gb|AAH77430.1| Fbl13 protein [Xenopus laevis]
Length = 400
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 172/335 (51%), Gaps = 41/335 (12%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++GL +ESLN+ C +TD+ + + + +L++L +S C +VTDS + YLKGL
Sbjct: 86 IQGLPNIESLNLSGCYNLTDNGLGHAFVQEIGSLRTLNLSLCKQVTDSSLGRIAQYLKGL 145
Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG 260
Q +L L GC L L L LNL C+ +SD G IG L +
Sbjct: 146 Q---VLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVG------IGHLAGMTRS 196
Query: 261 FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSL 317
E G +LE L L C + D L +++ GL L +NLSF G ISD L
Sbjct: 197 AAE----------GCLSLEQLTLQDCQKLTDLALKHISRGLQGLRVLNLSFCGGISDAGL 246
Query: 318 RKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFK 372
L+ + L+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 247 LHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLY 305
Query: 373 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 430
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++
Sbjct: 306 GLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 365
Query: 431 -SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+RIT GL + L L+ L L ++T ++ R
Sbjct: 366 CTRITKKGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 143/285 (50%), Gaps = 33/285 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA L ++L G +++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 VTDSSLGRIAQYLKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L +L L+ C ++ L ++ +GL L
Sbjct: 190 LAGMTR-----------------SAAEGCLSLEQLTLQDCQKLTDLALKHISRGLQGLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ + LS + L+SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKV 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 293 GD--QSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLEL 350
Query: 272 L-KGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGISD 314
+ + L+ L ++L C I +GL +T L L+ +NL +++
Sbjct: 351 IAEHLSQLTGIDLYGCTRITKKGLERITQLPCLKVLNLGLWQMTE 395
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 116/241 (48%), Gaps = 48/241 (19%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--LTGLTNLESINLSF-TGISDGSLRKLA------ 321
++GL N+ESLNL C + D GL + + + +L ++NLS ++D SL ++A
Sbjct: 86 IQGLPNIESLNLSGCYNLTDNGLGHAFVQEIGSLRTLNLSLCKQVTDSSLGRIAQYLKGL 145
Query: 322 ---------------------GLSSLKSLNLDA-RQITDTGLAALTSLT--------GLT 351
GL LKSLNL + R ++D G+ L +T L
Sbjct: 146 QVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLE 205
Query: 352 HLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L L ++TD ++ R + LR +L CGG ++DAG+ H+ + L LNL
Sbjct: 206 QLTLQDCQKLTDLALKHISRGLQGLRVLNLSFCGG-ISDAGLLHLSHMGGLRSLNLRSCD 264
Query: 408 NLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKR 464
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I R
Sbjct: 265 NISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGINR 324
Query: 465 L 465
+
Sbjct: 325 M 325
>gi|290972682|ref|XP_002669080.1| predicted protein [Naegleria gruberi]
gi|284082622|gb|EFC36336.1| predicted protein [Naegleria gruberi]
Length = 434
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 151/316 (47%), Gaps = 27/316 (8%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I+ + MK +S L+ L L + + + + GI + L KLT LN+ +T+ + +
Sbjct: 79 NEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLSKLTCLNIINANITSEGVKLIG 138
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL-----NLG---------FNEITDECLV- 270
L +L L+++ + +G + ++ +LK+L LG N++T CL+
Sbjct: 139 KLSNLTILDISGNLIGAEGGQYIGELNNLKILVASDNELGVFGAKSIGEMNQLTSLCLIG 198
Query: 271 ---------HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
++ LT L L+L IG+EG LT L L ++++ ISD L +
Sbjct: 199 NSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLTNLDMVSNNISD--LSSIG 256
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
L L L++ +I DTG+ + L GL L L G IT GA L L +L I
Sbjct: 257 QLGLLNCLDVRKNKIEDTGIRNICQLGGLNALRLCGNPITSEGAKILSEMVQLTNLSISE 316
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
+ D G K I L++L L++S +T ++ I L+ L+SL+++ + I G+ ++
Sbjct: 317 THIDDEGAKFIAQLTTLKYLDISTK-RITANGVKFICQLSKLISLDINWNNIGDEGVLYI 375
Query: 442 KPLKNLRSLTLESCKV 457
++ L +L C +
Sbjct: 376 SRMQQLETLNAVYCNI 391
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 155/319 (48%), Gaps = 24/319 (7%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L LN+ W N + D D+K + L NL L++S ++++ + + ++ L +LT L++
Sbjct: 46 QLTELNVNW-NRLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNS 104
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ ++S+ L L LN+ ++ +G + K+ +L +L++ N I E ++ L
Sbjct: 105 IENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGEL 164
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
NL+ L +G G ++ + L S+ L I + + ++ L+ L L+L +
Sbjct: 165 NNLKILVASDNELGVFGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLTQLTDLDLGRNE 224
Query: 336 ITDTGLAALTSLTGLTHLDLFG----------------------ARITDSGAAYLRNFKN 373
I + G LT L LT+LD+ +I D+G +
Sbjct: 225 IGNEGFKLLTKLEKLTNLDMVSNNISDLSSIGQLGLLNCLDVRKNKIEDTGIRNICQLGG 284
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L +L +CG +T G K + ++ LT L++S+ ++ D+ + I+ LT L L++S RI
Sbjct: 285 LNALRLCGNPITSEGAKILSEMVQLTNLSISE-THIDDEGAKFIAQLTTLKYLDISTKRI 343
Query: 434 TSAGLRHLKPLKNLRSLTL 452
T+ G++ + L L SL +
Sbjct: 344 TANGVKFICQLSKLISLDI 362
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 166/352 (47%), Gaps = 25/352 (7%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LSG++++ + + + S L L I + G+ + LS LT L+ N IT+
Sbjct: 74 LELSGNEISKNSMKFISQLSELTKLSVGLN-SIENEGINSIINLSKLTCLNIINAN-ITS 131
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM-----KPL 176
+G+K L NL LD I G L+ +G + LN +D+++ K +
Sbjct: 132 EGVKLIGKLSNLTILD------ISGNLIGAEGGQYIGELNNLKILVASDNELGVFGAKSI 185
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L SL + + + + G Y+ L +LT L+L + L+ L L L++
Sbjct: 186 GEMNQLTSLCLIGNSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLTNLDMV 245
Query: 237 RCQLSDDGCEKFSKIGSLKVLN---LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+SD S IG L +LN + N+I D + ++ L L +L L I EG
Sbjct: 246 SNNISD-----LSSIGQLGLLNCLDVRKNKIEDTGIRNICQLGGLNALRLCGNPITSEGA 300
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
L+ + L ++++S T I D + +A L++LK L++ ++IT G+ + L+ L L
Sbjct: 301 KILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISL 360
Query: 354 DLFGARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHIKDLSSLTLLNL 403
D+ I D G Y+ + L +L C GL G K + ++ LT+L++
Sbjct: 361 DINWNNIGDEGVLYISRMQQLETLNAVYCNIGL--EGAKLLSEMEQLTVLDV 410
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 148/297 (49%), Gaps = 5/297 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L +D+SG+ + G ++ + +NL+ L + ++ G + + ++ LTSL
Sbjct: 141 SNLTILDISGNLIGAEGGQYIGELNNLKILVASDN-ELGVFGAKSIGEMNQLTSLCLI-G 198
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N+I +G K + L L LDL R + G L L KL +L++ N SD+ +
Sbjct: 199 NSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLTNLDMVSNNI---SDLSSI 255
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L L + +K+ D+GI + L L L L G P+T+ LS + L L+++
Sbjct: 256 GQLGLLNCLDVRKNKIEDTGIRNICQLGGLNALRLCGNPITSEGAKILSEMVQLTNLSIS 315
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ D+G + +++ +LK L++ IT + + L+ L SL+++ IGDEG++ +
Sbjct: 316 ETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGDEGVLYI 375
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ + LE++N + I + L+ + L L++ ++I G+ L ++ L
Sbjct: 376 SRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKIKRIPGEGIQLLENIARFKSL 432
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
+ NL LN+D I ++ + L+G+ +L+ S + K + L L LN++
Sbjct: 1 MKNLTYLNIDWNKISEKSKIILSGMKHLK-----ILAASGSEIDKFSRLDQLTELNVNWN 55
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
++ D + ++ +L LT L+L G I+ + ++ L L + + + G+ I +
Sbjct: 56 RLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIIN 115
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
LS LT LN+ N N+T + ++LI L+ L L++S + I + G +++ L NL+ L
Sbjct: 116 LSKLTCLNII-NANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELNNLKILV 171
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 116/248 (46%), Gaps = 42/248 (16%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLE-------------------SLNLDSCGIGDEGL 293
+L LN+ +N+I+++ + L G+ +L+ LN++ + DE +
Sbjct: 3 NLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEIDKFSRLDQLTELNVNWNRLKDEDV 62
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
++ L NL + LS IS S++ ++ LS L L++ I + G+ ++ +L+ LT L
Sbjct: 63 KSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLSKLTCL 122
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN------- 406
++ A IT G + NL L+I G + G ++I +L++L +L S N
Sbjct: 123 NIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELNNLKILVASDNELGVFGA 182
Query: 407 ------------C----NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
C ++ ++ + IS LT L L++ + I + G + L L+ L +L
Sbjct: 183 KSIGEMNQLTSLCLIGNSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLTNL 242
Query: 451 TLESCKVT 458
+ S ++
Sbjct: 243 DMVSNNIS 250
>gi|410907724|ref|XP_003967341.1| PREDICTED: F-box/LRR-repeat protein 14-like [Takifugu rubripes]
Length = 403
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 176/381 (46%), Gaps = 67/381 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDSGL--------GHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDM-KPLSGLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + K L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 123 RVLNLSLCKQITDSSLGKIAEYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSC 182
Query: 215 ----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
V L ++ + L+L + L D C+K +TD L
Sbjct: 183 RHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQD--CQK----------------LTDLSLK 224
Query: 271 HL-KGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLK 327
H+ KGL L+ LNL CG I D G+++L+ +T+L S+NL S ISD + LA + SL+
Sbjct: 225 HVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRSCDNISDTGIMHLA-MGSLR 283
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
LD F +I D AY+ + L+SL +C ++D
Sbjct: 284 LSGLDVS---------------------FCDKIGDQSLAYIAQGLYQLKSLSLCSCHISD 322
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL +
Sbjct: 323 DGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQ 382
Query: 444 LKNLRSLTLESCKVTANDIKR 464
L L+ L L ++T N+ R
Sbjct: 383 LPCLKVLNLGLWQMTENERMR 403
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 164/322 (50%), Gaps = 48/322 (14%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
+++SL+ C ++D GL H ++ + +L L+ IT + A + NL L+L
Sbjct: 94 HIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCKQITDSSLGKIAEYLKNLEVLEL 153
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQIS 188
C+ I G L+ GL +L+SLN++ C ++D + LSG+T +L+ L +
Sbjct: 154 GGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQ 213
Query: 189 -CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
C K+TD + ++ KGL KL +LNL C ++ + LS + L LNL C +SD G
Sbjct: 214 DCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRSCDNISDTG 273
Query: 245 CEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLT 300
+ +GSL++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G
Sbjct: 274 IMHLA-MGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDG-------- 324
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG- 357
IN R + + LK+LN+ +ITD GL + LT LT +DL+G
Sbjct: 325 ----IN-----------RMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGC 369
Query: 358 ARITDSGAAYLRNFKNLRSLEI 379
+IT G + L+ L +
Sbjct: 370 TKITKRGLERITQLPCLKVLNL 391
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + L +LT ++L GC +++
Sbjct: 338 LNIGQCGRITDKGLELIADHLTQLTGIDLYGCT-----------------------KITK 374
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++T+
Sbjct: 375 RGLERITQLPCLKVLNLGLWQMTE 398
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 119/242 (49%), Gaps = 41/242 (16%)
Query: 251 IGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESIN 306
I SL+VLNL +ITD L + + L NLE L L C I + GL+ + GL L+S+N
Sbjct: 119 IPSLRVLNLSLCKQITDSSLGKIAEYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLN 178
Query: 307 L-SFTGISDGSLRKLAGLS--------SLKSLNL-DARQITDTGLAALTSLTGLTHLDLF 356
L S +SD + L+G++ SL+ L L D +++TD L ++ GL L +
Sbjct: 179 LRSCRHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSK--GLNKLKVL 236
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLE 415
+L CGG ++D G+ H+ ++ L LNL N++D +
Sbjct: 237 -------------------NLSFCGG-ISDVGMIHLSHMTHLCSLNLRSCDNISDTGIMH 276
Query: 416 LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL--QSRDLP 471
L G L L+VS +I L ++ + L L+SL+L SC ++ + I R+ Q +L
Sbjct: 277 LAMGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELK 336
Query: 472 NL 473
L
Sbjct: 337 TL 338
>gi|395845618|ref|XP_003795524.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 3 [Otolemur
garnettii]
Length = 387
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 175/367 (47%), Gaps = 67/367 (18%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 180 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 200
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 260
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 261 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 320 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 379
Query: 444 LKNLRSL 450
L L+ L
Sbjct: 380 LPCLKRL 386
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 170/325 (52%), Gaps = 48/325 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 325 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 361
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSL 377
DL+G RIT G + L+ L
Sbjct: 362 DLYGCTRITKRGLERITQLPCLKRL 386
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 48/241 (19%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--LTGLTNLESINLSF-TGISDGSLRKLA------ 321
++G+ N+ESLNL C + D GL + + + +L ++NLS I+D SL ++A
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 322 ---------------------GLSSLKSLNLDA-RQITDTGLAALTSLT--------GLT 351
GL LKSLNL + R ++D G+ L +T GL
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 352 HLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCD 264
Query: 408 NLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKR 464
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I R
Sbjct: 265 NISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 465 L 465
+
Sbjct: 325 M 325
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSAL 227
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
>gi|291001373|ref|XP_002683253.1| hypothetical protein NAEGRDRAFT_45222 [Naegleria gruberi]
gi|284096882|gb|EFC50509.1| hypothetical protein NAEGRDRAFT_45222 [Naegleria gruberi]
Length = 461
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 164/319 (51%), Gaps = 19/319 (5%)
Query: 68 DVTDSGLIH---LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
D+ +G+I + +NLQ L+ N C +I + G++ + L NL LS N + A+G+
Sbjct: 145 DIPKAGIIFCQAISQLTNLQKLNVNNC-KIGNLGVQFITQLGNLMELSVI-NTGMDAKGL 202
Query: 125 KAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A L NL KL + L N+K +L SL++ + + K +S + NL
Sbjct: 203 NLIATRLKNLTKLQFNGTVQHVTSLSNMK---QLTSLSMGFDVDVDVKGAKAISEMNNLT 259
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSD 242
+L ++ + D G+ + + +LT L + G +T L L L L LNLN + +
Sbjct: 260 NLSLNTN---DEGLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNLNDHEDFGN 316
Query: 243 DGCE---KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+G + + ++ SL++ ++G ++ + + +LK LT SL + + I +EG+ LT L
Sbjct: 317 EGAKLISELDQLTSLEINDIGIDKKGAKFITNLKQLT---SLTISNNPIFNEGVKYLTEL 373
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
L ++N FT I + ++ L+ +++LK LN+ + D G+ ++ + LT LD+
Sbjct: 374 PQLTNLNARFTKIDNEGVKYLSEMANLKILNIKRNYVQDLGVESICGMKNLTELDIEQNE 433
Query: 360 ITDSGAAYLRNFKNLRSLE 378
I++ G A L+ K L+ L+
Sbjct: 434 ISEEGVAKLKEMKQLKVLK 452
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 143/300 (47%), Gaps = 16/300 (5%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-LGSLFY 232
+ +S LTNL+ L ++ K+ + G+ ++ L L L++ + A L+ ++ L +L
Sbjct: 155 QAISQLTNLQKLNVNNCKIGNLGVQFITQLGNLMELSVINTGMDAKGLNLIATRLKNLTK 214
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD----ECLVHLKGLTNLESLNLDSCGI 288
L N + S + L L++GF+ D + + + LTNL S
Sbjct: 215 LQFNG---TVQHVTSLSNMKQLTSLSMGFDVDVDVKGAKAISEMNNLTNL------SLNT 265
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL 347
DEGL + +T L S+ + ++ L+ L L L+ LNL D + G ++ L
Sbjct: 266 NDEGLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNLNDHEDFGNEGAKLISEL 325
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
LT L++ I GA ++ N K L SL I + + GVK++ +L LT LN ++
Sbjct: 326 DQLTSLEINDIGIDKKGAKFITNLKQLTSLTISNNPIFNEGVKYLTELPQLTNLN-ARFT 384
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ ++ ++ +S + L LN+ + + G+ + +KNL L +E +++ + +L+
Sbjct: 385 KIDNEGVKYLSEMANLKILNIKRNYVQDLGVESICGMKNLTELDIEQNEISEEGVAKLKE 444
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 125/261 (47%), Gaps = 7/261 (2%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G++ K +++IA++ +L + +G T + L + L SL F + + G + +
Sbjct: 196 GMDAKGLNLIATRLKNLTKLQFNG---TVQHVTSLSNMKQLTSLSMGFDVDVDVKGAKAI 252
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
++NLT+LS N+ +G++ + L L + GL L L KL LN+
Sbjct: 253 SEMNNLTNLSLNTND----EGLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNL 308
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ K +S L L SL+I+ + G ++ L++LT L + P+ +
Sbjct: 309 NDHEDFGNEGAKLISELDQLTSLEINDIGIDKKGAKFITNLKQLTSLTISNNPIFNEGVK 368
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L+ L L LN ++ ++G + S++ +LK+LN+ N + D + + G+ NL L+
Sbjct: 369 YLTELPQLTNLNARFTKIDNEGVKYLSEMANLKILNIKRNYVQDLGVESICGMKNLTELD 428
Query: 283 LDSCGIGDEGLVNLTGLTNLE 303
++ I +EG+ L + L+
Sbjct: 429 IEQNEISEEGVAKLKEMKQLK 449
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 126/265 (47%), Gaps = 45/265 (16%)
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKG--------------LTNLESLNLDSCGIGDEGLV 294
+++ SL++ N+ EI+ E H+K LTNL+ LN+++C IG+ G+
Sbjct: 121 TQLTSLEIPNVDLGEIS-ESYFHVKDIPKAGIIFCQAISQLTNLQKLNVNNCKIGNLGVQ 179
Query: 295 NLTGLTNLESINLSFTGIS-------------------DGSLRKLAGLSSLK-----SLN 330
+T L NL +++ TG+ +G+++ + LS++K S+
Sbjct: 180 FITQLGNLMELSVINTGMDAKGLNLIATRLKNLTKLQFNGTVQHVTSLSNMKQLTSLSMG 239
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
D + G A++ + LT+L L D G + L SL++CG LT G+K
Sbjct: 240 FDV-DVDVKGAKAISEMNNLTNLSL---NTNDEGLEEICKMTQLTSLKVCGFYLTTLGLK 295
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+ L L LNL+ + + ++ +LIS L L SL +++ I G + + LK L SL
Sbjct: 296 FLPRLKKLRKLNLNDHEDFGNEGAKLISELDQLTSLEINDIGIDKKGAKFITNLKQLTSL 355
Query: 451 TLESCKVTANDIKRLQSRDLPNLVS 475
T+ + + +K L +LP L +
Sbjct: 356 TISNNPIFNEGVKYLT--ELPQLTN 378
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 150/333 (45%), Gaps = 39/333 (11%)
Query: 99 LEHLRGLSNLTSL------------SFRRNNAITAQGM---KAFAGLINLVKLDLERCTR 143
LE + ++ LTSL S+ I G+ +A + L NL KL++ C
Sbjct: 114 LESFKFMTQLTSLEIPNVDLGEISESYFHVKDIPKAGIIFCQAISQLTNLQKLNVNNCKI 173
Query: 144 IHGG---LVNLKGLMKLESLNIKWCNCITDSDMKPL----SGLTNLKSLQISCSKVTDSG 196
+ G + L LM+L +N T D K L + L NL LQ + T
Sbjct: 174 GNLGVQFITQLGNLMELSVIN-------TGMDAKGLNLIATRLKNLTKLQFNG---TVQH 223
Query: 197 IAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
+ L +++LT L++ V ++S + +L L+LN +D+G E+ K+ L
Sbjct: 224 VTSLSNMKQLTSLSMGFDVDVDVKGAKAISEMNNLTNLSLNT---NDEGLEEICKMTQLT 280
Query: 256 VLNL-GFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
L + GF +T L L L L LNL D G+EG ++ L L S+ ++ GI
Sbjct: 281 SLKVCGF-YLTTLGLKFLPRLKKLRKLNLNDHEDFGNEGAKLISELDQLTSLEINDIGID 339
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
+ + L L SL + I + G+ LT L LT+L+ +I + G YL N
Sbjct: 340 KKGAKFITNLKQLTSLTISNNPIFNEGVKYLTELPQLTNLNARFTKIDNEGVKYLSEMAN 399
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L+ L I + D GV+ I + +LT L++ QN
Sbjct: 400 LKILNIKRNYVQDLGVESICGMKNLTELDIEQN 432
>gi|260804809|ref|XP_002597280.1| hypothetical protein BRAFLDRAFT_260896 [Branchiostoma floridae]
gi|229282543|gb|EEN53292.1| hypothetical protein BRAFLDRAFT_260896 [Branchiostoma floridae]
Length = 398
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 115/366 (31%), Positives = 178/366 (48%), Gaps = 61/366 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+V L+L C T I + + L
Sbjct: 69 RGIRKVQILSLRRSLSYVVQGMS------NIVSLNLSGCYNLTDIGLSHAFTQDVPSLTE 122
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L + C +T++G+ GL KL LNL C
Sbjct: 123 LNLSLCKQITDSSLGRIAQYLKNLERLDLGGCCNITNTGLLLCAWGLLKLRYLNLRSCR- 181
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+SD G IG L G ++ E G
Sbjct: 182 ----------------------HISDVG------IGHLS----GISKNAAE------GCL 203
Query: 277 NLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDA 333
+LE L L C + D L +++ GL L+S+NLSF GISDG + LA +SSLK LNL +
Sbjct: 204 HLEHLCLQDCQKLTDLALKHVSKGLQRLKSLNLSFCCGISDGGMMYLAKMSSLKELNLRS 263
Query: 334 -RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAAYLRN-FKNLRSLEICGGGLTDAGV 389
I+D G+A L + ++HLD+ F ++ DS ++ + +L SL + ++D G+
Sbjct: 264 CDNISDIGIAHLADGSATISHLDVSFCDKVGDSALGHIAHGLYHLHSLSLGSCNISDEGL 323
Query: 390 -KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKN 446
+ ++ + LT L++ Q +TDK L LI+ LT L ++++ ++IT+AGL + L
Sbjct: 324 NRMVRSMHELTTLDIGQCYKITDKGLGLIADNLTQLTNIDLYGCTKITTAGLERIMQLPR 383
Query: 447 LRSLTL 452
L L L
Sbjct: 384 LSVLNL 389
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 159/322 (49%), Gaps = 46/322 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLD 137
SN+ SL+ + C ++D GL H + + +LT L+ IT + A + NL +LD
Sbjct: 91 SNIVSLNLSGCYNLTDIGLSHAFTQDVPSLTELNLSLCKQITDSSLGRIAQYLKNLERLD 150
Query: 138 LERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
L C I G L+ GL+KL LN++ C I+D + LSG++ +L+ L +
Sbjct: 151 LGGCCNITNTGLLLCAWGLLKLRYLNLRSCRHISDVGIGHLSGISKNAAEGCLHLEHLCL 210
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
C K+TD + ++ KGLQ+L LNL C C +SD G
Sbjct: 211 QDCQKLTDLALKHVSKGLQRLKSLNLSFC-----------------------CGISDGGM 247
Query: 246 EKFSKIGSLKVLNL-GFNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLT-GLTN 301
+K+ SLK LNL + I+D + HL G + L++ C +GD L ++ GL +
Sbjct: 248 MYLAKMSSLKELNLRSCDNISDIGIAHLADGSATISHLDVSFCDKVGDSALGHIAHGLYH 307
Query: 302 LESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG- 357
L S++L ISD L R + + L +L++ +ITD GL + +LT LT++DL+G
Sbjct: 308 LHSLSLGSCNISDEGLNRMVRSMHELTTLDIGQCYKITDKGLGLIADNLTQLTNIDLYGC 367
Query: 358 ARITDSGAAYLRNFKNLRSLEI 379
+IT +G + L L +
Sbjct: 368 TKITTAGLERIMQLPRLSVLNL 389
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 145/291 (49%), Gaps = 35/291 (12%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCS----NLQSL 86
+L +L L + D + IA +L +DL G ++T++GL+ C+ L+ L
Sbjct: 119 SLTELNLSLCKQITDSSLGRIAQYLKNLERLDLGGCCNITNTGLLL---CAWGLLKLRYL 175
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
+ C ISD G+ HL G+S A G ++L L L+ C ++
Sbjct: 176 NLRSCRHISDVGIGHLSGISK-----------------NAAEGCLHLEHLCLQDCQKLTD 218
Query: 147 -GLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-G 202
L ++ KGL +L+SLN+ +C I+D M L+ +++LK L + SC ++D GIA+L G
Sbjct: 219 LALKHVSKGLQRLKSLNLSFCCGISDGGMMYLAKMSSLKELNLRSCDNISDIGIAHLADG 278
Query: 203 LQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNL 259
++ L++ C V + L ++ L L L+L C +SD+G + + + L L++
Sbjct: 279 SATISHLDVSFCDKVGDSALGHIAHGLYHLHSLSLGSCNISDEGLNRMVRSMHELTTLDI 338
Query: 260 G-FNEITDECL-VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINL 307
G +ITD+ L + LT L +++L C I GL + L L +NL
Sbjct: 339 GQCYKITDKGLGLIADNLTQLTNIDLYGCTKITTAGLERIMQLPRLSVLNL 389
>gi|149173873|ref|ZP_01852502.1| hypothetical protein PM8797T_05530 [Planctomyces maris DSM 8797]
gi|148847403|gb|EDL61737.1| hypothetical protein PM8797T_05530 [Planctomyces maris DSM 8797]
Length = 473
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 158/380 (41%), Gaps = 46/380 (12%)
Query: 117 NAITAQGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N A G F+ + D L TR+ G L + ++ N + + K
Sbjct: 72 NKPEAGGGYYFSNYFDYCSEDELPMLTRVEG----------LRAFDMFDGNSFSPAGWKQ 121
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT---LLN--LEGCPVTAACLDSLSALGSL 230
+ ++ L++ +SC VTD + L+GL +L +LN ++ PV+ L LS+ +L
Sbjct: 122 IGQISGLEAFNVSCQYVTDEHLMGLQGLPQLKDLKILNNCMKQSPVSDQGLQVLSSFPAL 181
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV-------------------- 270
L L+ +++ GCE L+ L L + ITDECL
Sbjct: 182 RRLVLHSREINVRGCELIGDCTELRALEL-WGPITDECLKPLGKLKNLKHLIVVGTFSDA 240
Query: 271 ---HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
HL GL L L L S + GL + L S + + +L++L L L
Sbjct: 241 GLKHLSGLKQLTRLVLHSDQMTGSGLNSFAEAPELREFGFSGSPAGNATLKQLDQLPGLA 300
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
LNL + D L + L L L L + ITD G L KNLR L + +T+A
Sbjct: 301 VLNLSTPSVNDAVLQTMPDLPQLEALSLKNSNITDKGLDALVKVKNLRELVLYSTEITNA 360
Query: 388 GVKHIKDLSSLTLLNLSQNCN---LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
G+ ++ L L LL L + +T K LE LT L L V + +A L+PL
Sbjct: 361 GLIRLEPLQQLRLLVLGNPGHTELITGKGLE---SLTKLSRLEVLDIDYVNAEQLDLRPL 417
Query: 445 KNLRSLTLESCKVTANDIKR 464
SL ++D+++
Sbjct: 418 ARCSSLVEVILNFGSDDVRK 437
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 115/256 (44%), Gaps = 30/256 (11%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN-LDSC----GIGDEGLV 294
S G ++ +I L+ N+ +TDE L+ L+GL L+ L L++C + D+GL
Sbjct: 114 FSPAGWKQIGQISGLEAFNVSCQYVTDEHLMGLQGLPQLKDLKILNNCMKQSPVSDQGLQ 173
Query: 295 NLTGLTNLESINLS-----------------------FTGISDGSLRKLAGLSSLKSLNL 331
L+ L + L + I+D L+ L L +LK L +
Sbjct: 174 VLSSFPALRRLVLHSREINVRGCELIGDCTELRALELWGPITDECLKPLGKLKNLKHL-I 232
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+D GL L+ L LT L L ++T SG LR G +A +K
Sbjct: 233 VVGTFSDAGLKHLSGLKQLTRLVLHSDQMTGSGLNSFAEAPELREFGFSGSPAGNATLKQ 292
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+ L L +LNLS ++ D L+ + L L +L++ NS IT GL L +KNLR L
Sbjct: 293 LDQLPGLAVLNLS-TPSVNDAVLQTMPDLPQLEALSLKNSNITDKGLDALVKVKNLRELV 351
Query: 452 LESCKVTANDIKRLQS 467
L S ++T + RL+
Sbjct: 352 LYSTEITNAGLIRLEP 367
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 131/292 (44%), Gaps = 57/292 (19%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L +D + + C+ Q P V+D+ + V++S +L + L ++ G + DC+ L+
Sbjct: 149 LPQLKDLKILNNCMKQSP-VSDQGLQVLSS-FPALRRLVLHSREINVRGCELIGDCTELR 206
Query: 85 SLDF-----NFCIQ----------------ISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+L+ + C++ SD GL+HL GL LT L ++ +T G
Sbjct: 207 ALELWGPITDECLKPLGKLKNLKHLIVVGTFSDAGLKHLSGLKQLTRLVL-HSDQMTGSG 265
Query: 124 MKAFA------------------------GLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ +FA L L L+L + L + L +LE+
Sbjct: 266 LNSFAEAPELREFGFSGSPAGNATLKQLDQLPGLAVLNLSTPSVNDAVLQTMPDLPQLEA 325
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP---- 215
L++K N ITD + L + NL+ L + +++T++G+ L+ LQ+L LL L G P
Sbjct: 326 LSLKNSN-ITDKGLDALVKVKNLRELVLYSTEITNAGLIRLEPLQQLRLLVL-GNPGHTE 383
Query: 216 -VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL--KVLNLGFNEI 264
+T L+SL+ L L L+++ ++ SL +LN G +++
Sbjct: 384 LITGKGLESLTKLSRLEVLDIDYVNAEQLDLRPLARCSSLVEVILNFGSDDV 435
>gi|348505743|ref|XP_003440420.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oreochromis niloticus]
Length = 403
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 176/381 (46%), Gaps = 67/381 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDNGL--------GHAFVQDISSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 123 RVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSC 182
Query: 215 ----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
V L ++ + L L + L D C+K +TD L
Sbjct: 183 RHVSDVGIGHLSGMTRSAAEGCLTLEKLTLQD--CQK----------------LTDLSLK 224
Query: 271 HL-KGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLK 327
H+ KGL L+ LNL CG I D G+++L+ +T+L S+NL S ISD + LA + SL+
Sbjct: 225 HISKGLNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLRSCDNISDTGIMHLA-MGSLR 283
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
LD F +I D AY+ + L+SL +C ++D
Sbjct: 284 LTGLDVS---------------------FCDKIGDQSLAYIAQGLYQLKSLSLCSCHISD 322
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL +
Sbjct: 323 DGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQ 382
Query: 444 LKNLRSLTLESCKVTANDIKR 464
L L+ L L ++T ++ R
Sbjct: 383 LPCLKVLNLGLWQMTESERVR 403
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 165/322 (51%), Gaps = 48/322 (14%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
+++SL+ C ++D GL H ++ +S+L L+ IT + A + NL L+L
Sbjct: 94 HIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLEL 153
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS 188
C+ I G L+ GL +L+SLN++ C ++D + LSG+T L+ L +
Sbjct: 154 GGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLTLEKLTLQ 213
Query: 189 -CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
C K+TD + ++ KGL KL +LNL C ++ A + LS + L LNL C +SD G
Sbjct: 214 DCQKLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLRSCDNISDTG 273
Query: 245 CEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLT 300
+ +GSL++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G
Sbjct: 274 IMHLA-MGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDG-------- 324
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG- 357
IN R + + LK+LN+ +ITD GL + LT LT +DL+G
Sbjct: 325 ----IN-----------RMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGC 369
Query: 358 ARITDSGAAYLRNFKNLRSLEI 379
+IT G + L+ L +
Sbjct: 370 TKITKRGLERITQLPCLKVLNL 391
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + L +LT ++L GC +++
Sbjct: 338 LNIGQCVRITDKGLELIADHLTQLTGIDLYGCT-----------------------KITK 374
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++T+
Sbjct: 375 RGLERITQLPCLKVLNLGLWQMTE 398
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 131/263 (49%), Gaps = 44/263 (16%)
Query: 233 LNLNRC-QLSDDGC-EKFSK-IGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG 287
LNL C L+D+G F + I SL+VLNL +ITD L + + L NLE L L C
Sbjct: 98 LNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCS 157
Query: 288 -IGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLAGLS--------SLKSLNL-DARQ 335
I + GL+ + GL L+S+NL S +SD + L+G++ +L+ L L D ++
Sbjct: 158 NITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLTLEKLTLQDCQK 217
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+TD L ++ GL L + +L CGG ++DAG+ H+ +
Sbjct: 218 LTDLSLKHISK--GLNKLKVL-------------------NLSFCGG-ISDAGMIHLSHM 255
Query: 396 SSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTL 452
+ L LNL N++D + L G L L+VS +I L ++ + L L+SL+L
Sbjct: 256 THLCSLNLRSCDNISDTGIMHLAMGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSL 315
Query: 453 ESCKVTANDIKRL--QSRDLPNL 473
SC ++ + I R+ Q +L L
Sbjct: 316 CSCHISDDGINRMVRQMHELKTL 338
>gi|13905232|gb|AAH06913.1| Fbx14l protein, partial [Mus musculus]
Length = 327
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 173/335 (51%), Gaps = 41/335 (12%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ +ESLN+ C +TD+ + + + +L++L +S C ++TDS + YLKGL
Sbjct: 13 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 72
Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG 260
+ +L L GC L L L LNL C+ LSD G IG L +
Sbjct: 73 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVG------IGHLAGMTRS 123
Query: 261 FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSL 317
E G LE L L C + D L +++ GLT L +NLSF G ISD L
Sbjct: 124 AAE----------GCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGL 173
Query: 318 RKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFK 372
L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 174 LHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLD 232
Query: 373 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 430
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++
Sbjct: 233 GLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 292
Query: 431 -SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+RIT GL + L L+ L L ++T ++ R
Sbjct: 293 CTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 327
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 175/335 (52%), Gaps = 48/335 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 13 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 72
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 73 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 132
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 133 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 192
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 193 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 251
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 252 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 288
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
DL+G RIT G + L+ L + +TD+
Sbjct: 289 DLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 323
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 142 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 201
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 202 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 261
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 262 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 298
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 299 RGLERITQLPCLKVLNLGLWQMTD 322
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 44/263 (16%)
Query: 224 LSALGSLFYLNLNRC-QLSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
+ + ++ LNL+ C L+D+G +IGSL+ LNL +ITD L + + L L
Sbjct: 13 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 72
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQIT 337
E L L C N++ TG+ L GL LKSLNL + R ++
Sbjct: 73 EVLELGGCS------------------NITNTGL----LLIAWGLQRLKSLNLRSCRHLS 110
Query: 338 DTGLAALTSLT--------GLTHLDLFGA-RITDSGAAYL-RNFKNLR--SLEICGGGLT 385
D G+ L +T GL L L ++TD ++ R LR +L CGG ++
Sbjct: 111 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-IS 169
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-K 442
DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++ +
Sbjct: 170 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 229
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
L L+SL+L SC ++ + I R+
Sbjct: 230 GLDGLKSLSLCSCHISDDGINRM 252
>gi|428163352|gb|EKX32427.1| hypothetical protein GUITHDRAFT_121393 [Guillardia theta CCMP2712]
Length = 1894
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 159/356 (44%), Gaps = 3/356 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L +L + +N +T+ F GL +L L L GL L++L +
Sbjct: 472 GLASLQTL-YLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTLYLS 530
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N +T +GL +L++L +S +++T GL L L L +T+
Sbjct: 531 -GNELTSVPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSSNELTSIPETV 589
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L SL YL L+ +L+ F+ + SL+ L L +NE+T GL +L++L L
Sbjct: 590 FAGLASLQYLYLSSNKLTSVPETVFAGLASLQTLYLSYNELTSVPETVFNGLASLQTLYL 649
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+ GL +L S+ L ++ AGL+SL+SL+LD ++T
Sbjct: 650 SYNKLTSVPATVFAGLASLRSLGLYDNKLTSVPATVFAGLASLRSLSLDFNELTSIPETV 709
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
LT L L L+ +T +L+ L + LT L+S+ L L
Sbjct: 710 FAGLTSLQTLYLYDNELTSVPETVFNGLASLQYLYLDNNKLTSIPETVFAGLASVQTLYL 769
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
S N LT + +GL L LNVS++ +TS L +L++L L K+T+
Sbjct: 770 SGN-ELTSVPETVFNGLASLQYLNVSSNELTSVPETVFDGLASLQTLDLSYNKLTS 824
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 161/356 (45%), Gaps = 3/356 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L +L + +N +T+ F GL +L L L GL L+ L +
Sbjct: 352 GLASLQTL-YLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATVFAGLASLQYLYL- 409
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N +T +GLT+L+SL +S +K+T GL L L L +T+
Sbjct: 410 YDNELTSIPATVFAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYLSSNKLTSVPATV 469
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L SL L L +L+ F+ + SL+ L L NE+T GL +L++L L
Sbjct: 470 FNGLASLQTLYLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTLYL 529
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+ GL +L+++ LS ++ AGL+SL++L L + ++T
Sbjct: 530 SGNELTSVPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSSNELTSIPETV 589
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L L +L L ++T +L++L + LT L+SL L L
Sbjct: 590 FAGLASLQYLYLSSNKLTSVPETVFAGLASLQTLYLSYNELTSVPETVFNGLASLQTLYL 649
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
S N LT + +GL L SL + ++++TS L +LRSL+L+ ++T+
Sbjct: 650 SYN-KLTSVPATVFAGLASLRSLGLYDNKLTSVPATVFAGLASLRSLSLDFNELTS 704
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 157/356 (44%), Gaps = 3/356 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L SL + N +T+ F GL +L L L GL L++L +
Sbjct: 280 GLASLRSL-YLSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLS 338
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N +T +GL +L++L +S +K+T GL L L L +T+
Sbjct: 339 -GNELTSVPETVFTGLASLQTLYLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATV 397
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L SL YL L +L+ F+ + SL+ L L N++T GL +L++L L
Sbjct: 398 FAGLASLQYLYLYDNELTSIPATVFAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYL 457
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
S + GL +L+++ L ++ GL+SL++L L + ++T
Sbjct: 458 SSNKLTSVPATVFNGLASLQTLYLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPETV 517
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L L L L G +T +L++L + G LT L+SL L L
Sbjct: 518 FAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYL 577
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
S N LT + +GL L L +S++++TS L +L++L L ++T+
Sbjct: 578 SSN-ELTSIPETVFAGLASLQYLYLSSNKLTSVPETVFAGLASLQTLYLSYNELTS 632
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 158/356 (44%), Gaps = 3/356 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L +L + +N +T+ F GL +L L L+ GL L++L +
Sbjct: 184 GLASLQTL-YLSSNKLTSVPETVFNGLASLRSLYLDNNELTSVPETVFAGLASLQTLYL- 241
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N +T +GL +L++L +S +K+T GL L L L +T+
Sbjct: 242 YDNELTSIPATVFAGLASLQTLYLSYNKLTSVPETVFDGLASLRSLYLSYNELTSVPETV 301
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L SL YL L+ +L+ F+ + SL+ L L NE+T GL +L++L L
Sbjct: 302 FDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLSGNELTSVPETVFTGLASLQTLYL 361
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
S + GL +L+++ LS ++ AGL+SL+ L L ++T
Sbjct: 362 SSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATVFAGLASLQYLYLYDNELTSIPATV 421
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
LT L L L ++T +L++L + LT L+SL L L
Sbjct: 422 FAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYLSSNKLTSVPATVFNGLASLQTLYL 481
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
N LT +GL L +L +S++ +TS L +L++L L ++T+
Sbjct: 482 YDN-ELTSIPATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTLYLSGNELTS 536
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 132/294 (44%), Gaps = 1/294 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N +T +GL +L+ L +S +K+T GL + +L L G +T+ +
Sbjct: 100 NKLTSVPATVFAGLASLQYLYLSSNKLTSIPETVFAGLASIRVLILSGNELTSVPETVFA 159
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L SL YL L+ +L+ F+ + SL+ L L N++T GL +L SL LD+
Sbjct: 160 GLASLQYLYLDNNKLTSVPATVFNGLASLQTLYLSSNKLTSVPETVFNGLASLRSLYLDN 219
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+ GL +L+++ L ++ AGL+SL++L L ++T
Sbjct: 220 NELTSVPETVFAGLASLQTLYLYDNELTSIPATVFAGLASLQTLYLSYNKLTSVPETVFD 279
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L L +T +L+ L + LT L+SL L LS
Sbjct: 280 GLASLRSLYLSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLSG 339
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
N LT + +GL L +L +S++++TS L +L++L L S K+T+
Sbjct: 340 N-ELTSVPETVFTGLASLQTLYLSSNKLTSVPETVFNGLASLQTLYLSSNKLTS 392
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 173/372 (46%), Gaps = 18/372 (4%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLN 161
GL++L L + NN +T+ FAGL ++ L L T + + N GL L+ LN
Sbjct: 736 GLASLQYL-YLDNNKLTSIPETVFAGLASVQTLYLSGNELTSVPETVFN--GLASLQYLN 792
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ N +T GL +L++L +S +K+T GL L L L+ +T+
Sbjct: 793 VS-SNELTSVPETVFDGLASLQTLDLSYNKLTSVPETVFAGLASLRSLYLDNNELTSVPE 851
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ L SL+ L+L+ +L+ F L L L N ++ L GL +LE+L
Sbjct: 852 TVFAGLDSLWRLDLHSNRLASLALSLFYDCHDLMELYLNNNLLSGLLPGSLDGLVSLEAL 911
Query: 282 NLDSCGIGD---EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L S + D + L+ LT L N + +S G+ AGL+ L +L++ ++T
Sbjct: 912 YLHSNQLADISSDVFAQLSSLTTLTLHNNRLSSLSPGA---FAGLARLTTLSIHHNRLTR 968
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
A L+ L LDL +T A L +R+L++ L D + + +L+ L
Sbjct: 969 LSPGAFQGLSTLATLDLHDNHLTSLTAGALTGLDAMRALDLSSNKLADLPAQALHNLTGL 1028
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI--TSAGLRHLKPLKNLRSLTLESCK 456
L+L N LT + ++ L GL L +S++R+ AGL L +LR L L+
Sbjct: 1029 RNLSLDDN-QLTSLSAGVLEPLAGLEYLWLSHNRLAEVPAGLGS---LASLRYLLLDHNP 1084
Query: 457 VTANDIKRLQSR 468
+T+ D+ L ++
Sbjct: 1085 LTSLDVSLLDNK 1096
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 116/254 (45%), Gaps = 1/254 (0%)
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT + L G +T+ + L SL YL L+ +L+ F+ + S++VL L NE+T
Sbjct: 92 LTEIRLSGNKLTSVPATVFAGLASLQYLYLSSNKLTSIPETVFAGLASIRVLILSGNELT 151
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
GL +L+ L LD+ + GL +L+++ LS ++ GL+S
Sbjct: 152 SVPETVFAGLASLQYLYLDNNKLTSVPATVFNGLASLQTLYLSSNKLTSVPETVFNGLAS 211
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L+SL LD ++T L L L L+ +T A +L++L + LT
Sbjct: 212 LRSLYLDNNELTSVPETVFAGLASLQTLYLYDNELTSIPATVFAGLASLQTLYLSYNKLT 271
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
L+SL L LS N LT + GL L L +S++++TS L
Sbjct: 272 SVPETVFDGLASLRSLYLSYN-ELTSVPETVFDGLASLQYLYLSSNKLTSVPATVFAGLT 330
Query: 446 NLRSLTLESCKVTA 459
+L++L L ++T+
Sbjct: 331 SLQTLYLSGNELTS 344
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 159/369 (43%), Gaps = 62/369 (16%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
Q++D + LS+LT+L+ NN +++ AFAGL L L + R TR+ G
Sbjct: 917 QLADISSDVFAQLSSLTTLTLH-NNRLSSLSPGAFAGLARLTTLSIHHNRLTRLSPG--A 973
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+GL L +L++ N +T L+GL +++L +S +K+ D L L L L+
Sbjct: 974 FQGLSTLATLDLH-DNHLTSLTAGALTGLDAMRALDLSSNKLADLPAQALHNLTGLRNLS 1032
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L+ +T+ L L L YL L+ +L++ + SL+ L L N +T +
Sbjct: 1033 LDDNQLTSLSAGVLEPLAGLEYLWLSHNRLAEVPA-GLGSLASLRYLLLDHNPLTSLDVS 1091
Query: 271 HLKGLTNLESLNLDSCGIG----------------------------------------- 289
L +L +L ++S
Sbjct: 1092 LLDNKPDLRALGVNSDAFKALSAQRPSVLETLLELWLCKSDDDQDQSAAGELLDKLSQLT 1151
Query: 290 -------DEGLVNLTGLTNLESINLSFTGISDGSLRKLAG-----LSSLKSLNLDARQIT 337
D+ L++ L++L S+ + + + D L +L L SL+SL L +T
Sbjct: 1152 GLYLFGFDQSLIHAGMLSSLSSVRVLW--LEDNLLDQLPPGTFDQLPSLQSLYLIHNGLT 1209
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
+AAL++L+GLT L + IT A R+ LR+L++ G ++ + +L +
Sbjct: 1210 AVPVAALSNLSGLTELHIVNDGITRVPAGAFRSLSGLRTLDLSGNLISSIEAEAFDNLDN 1269
Query: 398 LTLLNLSQN 406
+ L+LS N
Sbjct: 1270 VRQLDLSNN 1278
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 144/353 (40%), Gaps = 74/353 (20%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLN 161
GL+ LT+LS N +T AF GL L LDL T + G L GL + +L+
Sbjct: 952 GLARLTTLSIHHNR-LTRLSPGAFQGLSTLATLDLHDNHLTSLTAG--ALTGLDAMRALD 1008
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---------SGIAYLK----------- 201
+ N + D + L LT L++L + +++T +G+ YL
Sbjct: 1009 LS-SNKLADLPAQALHNLTGLRNLSLDDNQLTSLSAGVLEPLAGLEYLWLSHNRLAEVPA 1067
Query: 202 ---GLQKLTLLNLEGCPVTA---ACLDS---LSALG----SLFYLNLNR----------- 237
L L L L+ P+T+ + LD+ L ALG + L+ R
Sbjct: 1068 GLGSLASLRYLLLDHNPLTSLDVSLLDNKPDLRALGVNSDAFKALSAQRPSVLETLLELW 1127
Query: 238 -CQLSDD-----GCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLN-------- 282
C+ DD E K+ L L L GF D+ L+H L++L S+
Sbjct: 1128 LCKSDDDQDQSAAGELLDKLSQLTGLYLFGF----DQSLIHAGMLSSLSSVRVLWLEDNL 1183
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
LD G L +L+S+ L G++ + L+ LS L L++ IT
Sbjct: 1184 LDQLPPG-----TFDQLPSLQSLYLIHNGLTAVPVAALSNLSGLTELHIVNDGITRVPAG 1238
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
A SL+GL LDL G I+ A N N+R L++ L V ++ L
Sbjct: 1239 AFRSLSGLRTLDLSGNLISSIEAEAFDNLDNVRQLDLSNNRLVMLDVAELRGL 1291
>gi|449019210|dbj|BAM82612.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]
Length = 2325
Score = 89.7 bits (221), Expect = 3e-15, Method: Composition-based stats.
Identities = 138/520 (26%), Positives = 215/520 (41%), Gaps = 134/520 (25%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR----RNNAI-TAQGMKAFAGLINLVKLD 137
L+ LD + CI ++D GL L ++ L++ + + AI + +A AGL+ L
Sbjct: 1801 LKHLDLSSCIHLTDEGLGAL--VAALSTPEAKAGDSEDTAIESVATTEASAGLV--APLT 1856
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQISCSKVTDS 195
E + G LE+L++ C + D ++PL +L+ + +S +++T +
Sbjct: 1857 TEALLYSSSSNSSSSG--TLETLSVAHCFRLGDRSLRPLLRQHRQSLRVVDLSYTRITGA 1914
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALG--------SLFYLNLNRC-QLSDDG- 244
+ L L +L L+L GC T + D+ + G L +L+L +C QL DG
Sbjct: 1915 VLQELGALPQLQSLSLCGCGETLSVESDAATRFGEELALPGKQLVHLDLGKCAQLVTDGF 1974
Query: 245 ----------------------------CEK--------FSKIGSLKVLNLGFNEITDEC 268
E+ +S +L+ L++ +TD
Sbjct: 1975 LAALAGLASGRRTHHQYNRQQYQQNPAAVERLVHATHGVYSSRDTLRSLSVHGCRLTDRS 2034
Query: 269 LVH-LKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINL------------------- 307
L H ++ LE L+L C I D GL +L L +L ++L
Sbjct: 2035 LSHYVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLRELDLADTNVTSAVGASLLARLRQ 2094
Query: 308 ------SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA------------------- 342
S+T + + L+ L L+ L LDAR I+D L
Sbjct: 2095 LRRLDLSYTAVQSNITKSLSTLEQLEWLGLDARLISDDALQVEENEASPEPVSSRDVAAP 2154
Query: 343 ALTSLT-------------GLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 388
AL+S T L HLDLFGA ITD G +YL + + SLE+C G LTDA
Sbjct: 2155 ALSSATVAVHLHRRIGLPRHLRHLDLFGAHITDRGMSYLVQACPYVESLEVCSGALTDAA 2214
Query: 389 VKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTG----------LVSLNVSNSRITSAG 437
++ I + L L LN+SQN ++D L + L L +LN++ + +T G
Sbjct: 2215 LRLIAQHLPYLRALNISQNMRISDAGLREYARLAQVQQDLGQPHLLETLNLAFTAVTWRG 2274
Query: 438 LRHLKP-LKNLRSLTLESCKVTANDIKRLQS--RDLPNLV 474
L L P L LR L + C + +QS R P LV
Sbjct: 2275 LAVLLPTLPYLRLLCVRGCNKDSFSAVSVQSLERMRPGLV 2314
Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats.
Identities = 109/387 (28%), Positives = 171/387 (44%), Gaps = 55/387 (14%)
Query: 61 SVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN 117
++DLSG S +TD GLI L L+ + C+ I G+ L R S L LS
Sbjct: 1713 TLDLSGCSHITDRGLIGLAPHLRQLKECILDGCLGIWGPGVRALLRLCSKLERLSLAGCR 1772
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++T + AF GL + V C R G LK L++ C +TD + L
Sbjct: 1773 SLTDE---AFQGLASGVARG--PCQRTSAGRFALK------HLDLSSCIHLTDEGLGAL- 1820
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL-----DSLSALGSLFY 232
+ +L +K DS ++ + P+T L + S+ G+L
Sbjct: 1821 ----VAALSTPEAKAGDSEDTAIESVATTEASAGLVAPLTTEALLYSSSSNSSSSGTLET 1876
Query: 233 LNLNRC-QLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-- 287
L++ C +L D + SL+V++L + IT L L L L+SL+L CG
Sbjct: 1877 LSVAHCFRLGDRSLRPLLRQHRQSLRVVDLSYTRITGAVLQELGALPQLQSLSLCGCGET 1936
Query: 288 ----------IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNLDARQI 336
G+E + L +L+ + ++DG L LAGL+S ++ + RQ
Sbjct: 1937 LSVESDAATRFGEELALPGKQLVHLD-LGKCAQLVTDGFLAALAGLASGRRTHHQYNRQQ 1995
Query: 337 TDTGLAALTSLTGLTH-----------LDLFGARITD-SGAAYLRNFKNLRSLEICGGGL 384
AA+ L TH L + G R+TD S + Y+R F+ L L++ L
Sbjct: 1996 YQQNPAAVERLVHATHGVYSSRDTLRSLSVHGCRLTDRSLSHYVRLFQGLERLDLSQCRL 2055
Query: 385 -TDAGVKHIKDLSSLTLLNLSQNCNLT 410
TDAG++H++ L SL L+L+ + N+T
Sbjct: 2056 ITDAGLEHLQSLKSLRELDLA-DTNVT 2081
Score = 42.0 bits (97), Expect = 0.62, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
+ S +L S+ + G +TD L H ++ L+ LD + C I+D GLEHL+ L +L
Sbjct: 2013 VYSSRDTLRSLSVHGCRLTDRSLSHYVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLRE 2072
Query: 111 LSFRRNNAITAQG 123
L N +A G
Sbjct: 2073 LDLADTNVTSAVG 2085
>gi|290984286|ref|XP_002674858.1| predicted protein [Naegleria gruberi]
gi|284088451|gb|EFC42114.1| predicted protein [Naegleria gruberi]
Length = 385
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 26/228 (11%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L +L LN+ C + ++G ++ +K L+NL L +
Sbjct: 179 IGKLNNLITLNITSCNIGEEGSKEIAK------------------------LSNLTELKI 214
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
D+ IG EG+ + L+NL S+N+ I +++ L +LK+LN+D I D G
Sbjct: 215 DNNNIGSEGVKYIAQLSNLTSLNVYNNNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQE 274
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ L LT L+++ I GA + NLR+L I + + G K I L++LT LN+
Sbjct: 275 ISKLINLTSLNMYKNSIGYEGAKAISKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNI 334
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP-LKNLRSL 450
S N N+ D+ + I+ L+ L L + N+ I + ++ LKNL+ L
Sbjct: 335 SNN-NIGDEGAKEITKLSNLTGLKIDNNNIGYEAAKEIRQLLKNLKYL 381
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 140/292 (47%), Gaps = 34/292 (11%)
Query: 64 LSGSDVTDSGLIHLK-----------DCSNLQSLDFNFCI---QISDGGLEHLRGLS-NL 108
+S SD T+S L +++ + N +++ F CI S G + L+G++ N
Sbjct: 87 ISDSDFTESKLENIQFILCKFNNSNFNYENFENVTFTDCIYDDNCSFSGEKQLKGIALNQ 146
Query: 109 TSLSF----RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
S+ F ++NN I IN + L+ ++ + L L+ +LNI
Sbjct: 147 NSIKFEILDQKNNWI-----------INYLDLNNNVGYKLAKFIGKLNNLI---TLNITS 192
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
CN I + K ++ L+NL L+I + + G+ Y+ L LT LN+ + +
Sbjct: 193 CN-IGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNVYNNNIGTEGAKEI 251
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
L +L LN++ + D+G ++ SK+ +L LN+ N I E + L NL +L +
Sbjct: 252 GKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKAISKLGNLRALTIY 311
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+ IG+EG ++ LTNL S+N+S I D +++ LS+L L +D I
Sbjct: 312 NNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEITKLSNLTGLKIDNNNI 363
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 28/219 (12%)
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
K+ +L LN+ I +E + L+NL L +D+ IG EG+ + L+NL S+N+
Sbjct: 181 KLNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNVYN 240
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
I +++ L +LK+LN+D I D G ++ L LT L+++ I GA +
Sbjct: 241 NNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKAIS 300
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
NLR+L I + + G K I S LT L SLN+S
Sbjct: 301 KLGNLRALTIYNNYIGEEGAKEI-------------------------SKLTNLTSLNIS 335
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKV---TANDIKRL 465
N+ I G + + L NL L +++ + A +I++L
Sbjct: 336 NNNIGDEGAKEITKLSNLTGLKIDNNNIGYEAAKEIRQL 374
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 95/197 (48%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
++ L L LN+ C + ++ L +L L ++ + +G + +++ +L LN
Sbjct: 178 FIGKLNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLN 237
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
+ N I E + L NL++LN+D+ IGDEG ++ L NL S+N+ I +
Sbjct: 238 VYNNNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAK 297
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
++ L +L++L + I + G ++ LT LT L++ I D GA + NL L+
Sbjct: 298 AISKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEITKLSNLTGLK 357
Query: 379 ICGGGLTDAGVKHIKDL 395
I + K I+ L
Sbjct: 358 IDNNNIGYEAAKEIRQL 374
>gi|410046126|ref|XP_003952131.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 14 [Pan
troglodytes]
Length = 568
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 120/394 (30%), Positives = 186/394 (47%), Gaps = 69/394 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 218 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 271
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 272 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 329
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 330 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 350
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 351 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 410
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 411 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 469
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 470 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 529
Query: 444 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
L L+ L L ++T D ++ D L + R
Sbjct: 530 LPCLKVLNLGLWQMT--DSEKEARGDFSPLFTVR 561
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 179/346 (51%), Gaps = 48/346 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 236 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 295
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 296 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 355
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 356 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 415
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 416 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 474
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 475 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 511
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
DL+G RIT G + L+ L + +TD+ + D S L
Sbjct: 512 DLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKEARGDFSPL 557
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 365 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 424
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 425 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 484
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 485 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGC-----------------------TRITK 521
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 522 RGLERITQLPCLKVLNLGLWQMTD 545
>gi|290987030|ref|XP_002676226.1| predicted protein [Naegleria gruberi]
gi|284089827|gb|EFC43482.1| predicted protein [Naegleria gruberi]
Length = 298
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 148/305 (48%), Gaps = 13/305 (4%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERC-TRIHGGLVNLKGLMKLESLNI 162
L NLT L R I G+K + L NL L++ + C T GL ++ + KL L +
Sbjct: 1 LENLTFLEISR---IGDMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCLKV 57
Query: 163 ---KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
K CN + +S T L L + + D G+ L +++LT L L CP A
Sbjct: 58 RDLKICN----EGVNWISQSTQLTDLDFTTCTL-DQGLESLCEMKRLTSLWLPSCPKYAN 112
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
++ + L L LN+ ++D ++ L L++ N+I E + + LTNL
Sbjct: 113 KVELIGQLTQLTSLNICARGINDQDGVHIKELTQLTELDISLNQIVFETIESISQLTNLI 172
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
LN+ C IGD+G + L+ L + + I+D + ++ L L L++ +I+ T
Sbjct: 173 ILNMSYCNIGDDGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISNNEISKT 232
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
G +++ L LT+L++ I D G ++ + LRSL G++ G+K I++L LT
Sbjct: 233 GAESISGLRNLTYLNIGYNLIGDEGCDFICDLSLLRSLHADKTGISSEGIKSIRNLRKLT 292
Query: 400 LLNLS 404
L+LS
Sbjct: 293 SLSLS 297
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 146/301 (48%), Gaps = 10/301 (3%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGC-PVTAACLDSLSALGSLFYLNLN 236
L NL L+IS ++ D G+ Y+ L+ L +LN+ + C T L+S+S + L L +
Sbjct: 1 LENLTFLEIS--RIGDMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCLKVR 58
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ ++G S+ S ++ +L F T D+ L L + L SL L SC +
Sbjct: 59 DLKICNEGVNWISQ--STQLTDLDFTTCTLDQGLESLCEMKRLTSLWLPSCPKYANKVEL 116
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+ LT L S+N+ GI+D + L+ L L++ QI + +++ LT L L++
Sbjct: 117 IGQLTQLTSLNICARGINDQDGVHIKELTQLTELDISLNQIVFETIESISQLTNLIILNM 176
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
I D GA + LR L++ +TDAGV I L L L++S N ++ E
Sbjct: 177 SYCNIGDDGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISNN-EISKTGAE 235
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
ISGL L LN+ + I G + L LRSL + +++ IK + R+L L S
Sbjct: 236 SISGLRNLTYLNIGYNLIGDEGCDFICDLSLLRSLHADKTGISSEGIKSI--RNLRKLTS 293
Query: 476 F 476
Sbjct: 294 L 294
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 143/298 (47%), Gaps = 4/298 (1%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQI--SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
LE+L + I D +K +S L NL+ L I C T G+ + + KLT L +
Sbjct: 1 LENLTFLEISRIGDMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCLKVRDL 60
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ ++ +S L L+ C L D G E ++ L L L + +
Sbjct: 61 KICNEGVNWISQSTQLTDLDFTTCTL-DQGLESLCEMKRLTSLWLPSCPKYANKVELIGQ 119
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
LT L SLN+ + GI D+ V++ LT L +++S I ++ ++ L++L LN+
Sbjct: 120 LTQLTSLNICARGINDQDGVHIKELTQLTELDISLNQIVFETIESISQLTNLIILNMSYC 179
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
I D G + L+ L L + ITD+G + K+L L+I ++ G + I
Sbjct: 180 NIGDDGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISNNEISKTGAESISG 239
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L +LT LN+ N + D+ + I L+ L SL+ + I+S G++ ++ L+ L SL+L
Sbjct: 240 LRNLTYLNIGYNL-IGDEGCDFICDLSLLRSLHADKTGISSEGIKSIRNLRKLTSLSL 296
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 120/245 (48%), Gaps = 14/245 (5%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ + G+ + + L LDF C D GLE L + LTSL + + A ++
Sbjct: 62 ICNEGVNWISQSTQLTDLDFTTCTL--DQGLESLCEMKRLTSL-WLPSCPKYANKVELIG 118
Query: 129 GLINLVKLDLERCTRIHGGL-----VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L++ C R G+ V++K L +L L+I N I ++ +S LTNL
Sbjct: 119 QLTQLTSLNI--CAR---GINDQDGVHIKELTQLTELDISL-NQIVFETIESISQLTNLI 172
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L +S + D G + L +L L + +T A + S+S L L L+++ ++S
Sbjct: 173 ILNMSYCNIGDDGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISNNEISKT 232
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
G E S + +L LN+G+N I DE + L+ L SL+ D GI EG+ ++ L L
Sbjct: 233 GAESISGLRNLTYLNIGYNLIGDEGCDFICDLSLLRSLHADKTGISSEGIKSIRNLRKLT 292
Query: 304 SINLS 308
S++LS
Sbjct: 293 SLSLS 297
>gi|321455314|gb|EFX66450.1| hypothetical protein DAPPUDRAFT_302690 [Daphnia pulex]
Length = 397
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 164/316 (51%), Gaps = 43/316 (13%)
Query: 61 SVDLSGS-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S+DLSG +VTD G+ H D L+ L+ + C QI+D L L + L L
Sbjct: 98 SLDLSGCFNVTDIGIAHALTADVPTLKRLNLSLCKQITDSSLSKLAQYCRQLQELDLGGC 157
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL-------MKLESLNIKWCNC 167
+T G+ A GL +L L+L C + G+ +L GL + LE L ++ C
Sbjct: 158 CNVTNAGLLLIAWGLKSLKSLNLRSCWHVSDLGIASLAGLGSDAEGNLALEHLGLQDCQK 217
Query: 168 ITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD + +S GL LKS+ +S C ++DSG+ YL + L LNL C D++S
Sbjct: 218 LTDDALMHVSTGLKQLKSINLSFCLSISDSGLKYLAKMPSLAELNLRSC-------DNIS 270
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNL 283
+G + YL E S+I SL V F + I D+ +VH+ +GL +L+ L+L
Sbjct: 271 DVG-MAYL-----------AEGGSRITSLDV---SFCDRIDDQAVVHVAQGLVHLKQLSL 315
Query: 284 DSCGIGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNL-DARQITDT 339
+C + DEGL+ + L +L+++N+ + I+D S++ +A L L+ ++L +IT +
Sbjct: 316 SACHVSDEGLIRVALSLLDLQTLNIGQCSRITDRSIQAVADHLRKLRCIDLYGCTKITTS 375
Query: 340 GLAALTSLTGLTHLDL 355
GL + L L+ L+L
Sbjct: 376 GLEKIMKLPELSVLNL 391
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 45/238 (18%)
Query: 273 KGLTNLESLNLDSC-GIGDEGLVN-LTG-LTNLESINLSF-TGISDGSLRKLA------- 321
+GL N+ESL+L C + D G+ + LT + L+ +NLS I+D SL KLA
Sbjct: 91 QGLPNIESLDLSGCFNVTDIGIAHALTADVPTLKRLNLSLCKQITDSSLSKLAQYCRQLQ 150
Query: 322 --------------------GLSSLKSLNLDA-RQITDTGLAALTSL-------TGLTHL 353
GL SLKSLNL + ++D G+A+L L L HL
Sbjct: 151 ELDLGGCCNVTNAGLLLIAWGLKSLKSLNLRSCWHVSDLGIASLAGLGSDAEGNLALEHL 210
Query: 354 DLFG-ARITDSGAAYLRN-FKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L ++TD ++ K L+S+ + ++D+G+K++ + SL LNL N++
Sbjct: 211 GLQDCQKLTDDALMHVSTGLKQLKSINLSFCLSISDSGLKYLAKMPSLAELNLRSCDNIS 270
Query: 411 DKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
D + L G + + SL+VS RI + H+ + L +L+ L+L +C V+ + R+
Sbjct: 271 DVGMAYLAEGGSRITSLDVSFCDRIDDQAVVHVAQGLVHLKQLSLSACHVSDEGLIRV 328
>gi|290991272|ref|XP_002678259.1| predicted protein [Naegleria gruberi]
gi|284091871|gb|EFC45515.1| predicted protein [Naegleria gruberi]
Length = 434
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 158/311 (50%), Gaps = 10/311 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L LN+ W N + D D++ + L NL L++S ++++ + + ++ L +LT L++
Sbjct: 46 QLTELNVNW-NRLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNS 104
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ ++S+ L L LN+ ++ +G + K+ +L +L++ N I E ++ L
Sbjct: 105 IENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGEL 164
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
NL++L +G G ++ + L S+ L I + + ++ LS L L+L +
Sbjct: 165 KNLKTLVASDNELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNE 224
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITD---SGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
I D G L L LT+LDL I+D +G L N ++R +I D G+++I
Sbjct: 225 IGDEGFKLLAKLEKLTNLDLVSNNISDLSSTGQLGLLNCLDVRKNKI-----EDKGIRNI 279
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
LS L L L N +T + +++S + L +L++S + I G + + L L+ L +
Sbjct: 280 CQLSGLQSLRLCANP-ITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDI 338
Query: 453 ESCKVTANDIK 463
+ ++TAN +K
Sbjct: 339 STKRITANGVK 349
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 165/375 (44%), Gaps = 30/375 (8%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L L+ N+ ++ D +E + L NLT L N I+ MK + L L KL + +
Sbjct: 47 LTELNVNWN-RLKDEDVESIGNLKNLTLLELS-GNEISKNSMKFISQLSELTKLSVGLNS 104
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+ G+ ++ L KL LNI N IT +K + L+NL L IS + + G Y+
Sbjct: 105 IENEGINSIINLSKLTCLNIINAN-ITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGE 163
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L+ L L + S+ + L L L + ++G + S++ L L+LG N
Sbjct: 164 LKNLKTLVASDNELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKN 223
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
EI DE L L L +L+L S I D GL N +++ I D +R +
Sbjct: 224 EIGDEGFKLLAKLEKLTNLDLVSNNISDLSSTGQLGLLN--CLDVRKNKIEDKGIRNICQ 281
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
LS L+SL L A IT G L+ + LT+L + I D GA ++ L+ L+I
Sbjct: 282 LSGLQSLRLCANPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTK 341
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+T GVK I LS L +SL+++ + I G+ ++
Sbjct: 342 RITANGVKFICQLSKL-------------------------ISLDINWNNIGDEGVLYIS 376
Query: 443 PLKNLRSLTLESCKV 457
++ L +L C +
Sbjct: 377 RMQQLETLNAVYCNI 391
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 169/352 (48%), Gaps = 19/352 (5%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LSG++++ + + + S L L I + G+ + LS LT L+ N IT+
Sbjct: 74 LELSGNEISKNSMKFISQLSELTKLSVGLN-SIENEGINSIINLSKLTCLNIINAN-ITS 131
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM-----KPL 176
+G+K L NL LD I G L+ +G + L +D+++ K +
Sbjct: 132 EGVKLIGKLSNLTILD------ISGNLIGAEGGQYIGELKNLKTLVASDNELGVLGAKSI 185
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L SL + + + + G Y+ L +LT L+L + L+ L L L+L
Sbjct: 186 GEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNEIGDEGFKLLAKLEKLTNLDLV 245
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+SD ++G L L++ N+I D+ + ++ L+ L+SL L + I EG L
Sbjct: 246 SNNISD--LSSTGQLGLLNCLDVRKNKIEDKGIRNICQLSGLQSLRLCANPITSEGAKIL 303
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ + L ++++S T I D + +A L++LK L++ ++IT G+ + L+ L LD+
Sbjct: 304 SEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDIN 363
Query: 357 GARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
I D G Y+ + L +L C GL G K + ++ LT+L++ N
Sbjct: 364 WNNIGDEGVLYISRMQQLETLNAVYCNIGL--EGAKLLSEMEQLTVLDVKIN 413
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 121/256 (47%), Gaps = 6/256 (2%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
++ LT LN++ ++ LS + L L + ++ +KFS++ L LN+ +N
Sbjct: 1 MKNLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEI-----DKFSRLDQLTELNVNWN 55
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
+ DE + + L NL L L I + ++ L+ L +++ I + + +
Sbjct: 56 RLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIIN 115
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
LS L LN+ IT G+ + L+ LT LD+ G I G Y+ KNL++L
Sbjct: 116 LSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELKNLKTLVASDN 175
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L G K I +++ LT L L N + ++ + IS L+ L L++ + I G + L
Sbjct: 176 ELGVLGAKSIGEMNQLTSLCLIGNS-IGNEGAKYISQLSQLTDLDLGKNEIGDEGFKLLA 234
Query: 443 PLKNLRSLTLESCKVT 458
L+ L +L L S ++
Sbjct: 235 KLEKLTNLDLVSNNIS 250
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 151/340 (44%), Gaps = 29/340 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +++ +++T G+ + SNL LD + + ++GG +++ L NL +L +
Sbjct: 117 SKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGG-QYIGELKNLKTL-VASD 174
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N + G K+ + L L L N I + K +
Sbjct: 175 NELGVLGAKSIGEMNQLTSLCL-------------------------IGNSIGNEGAKYI 209
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S L+ L L + +++ D G L L+KLT NL+ + L S LG L L++
Sbjct: 210 SQLSQLTDLDLGKNEIGDEGFKLLAKLEKLT--NLDLVSNNISDLSSTGQLGLLNCLDVR 267
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ ++ D G ++ L+ L L N IT E L + L +L++ I DEG +
Sbjct: 268 KNKIEDKGIRNICQLSGLQSLRLCANPITSEGAKILSEMVQLTNLSISETHIDDEGAKFI 327
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
LT L+ +++S I+ ++ + LS L SL+++ I D G+ ++ + L L+
Sbjct: 328 AQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAV 387
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
I GA L + L L++ + G++ +++++
Sbjct: 388 YCNIGLEGAKLLSEMEQLTVLDVKINRIPGEGIQLLENIA 427
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 5/228 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ S L +DL +++ D G L L +LD ISD L L L L
Sbjct: 210 SQLSQLTDLDLGKNEIGDEGFKLLAKLEKLTNLDL-VSNNISD--LSSTGQLGLLNCLDV 266
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
R+ N I +G++ L L L L G L +++L +L+I + I D
Sbjct: 267 RK-NKIEDKGIRNICQLSGLQSLRLCANPITSEGAKILSEMVQLTNLSISETH-IDDEGA 324
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K ++ LT LK L IS ++T +G+ ++ L KL L++ + + +S + L L
Sbjct: 325 KFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETL 384
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
N C + +G + S++ L VL++ N I E + L+ + +SL
Sbjct: 385 NAVYCNIGLEGAKLLSEMEQLTVLDVKINRIPGEGIQLLENIARFKSL 432
>gi|290983152|ref|XP_002674293.1| predicted protein [Naegleria gruberi]
gi|284087882|gb|EFC41549.1| predicted protein [Naegleria gruberi]
Length = 338
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 118/246 (47%), Gaps = 26/246 (10%)
Query: 160 LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K+ + DS KP ++ + L SL IS +++ D G+ ++
Sbjct: 112 VNVKFSKRLFDSIEKPTFITEMKQLTSLDISNNRIGDEGVKFI----------------- 154
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
S + L L + + D+G + ++ L L +G N+I DE + +
Sbjct: 155 -------SEMKQLISLGIYNNGIGDEGVKSIIEMKRLTSLGIGGNQIGDEGAKSISEMKQ 207
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L SL++++ GDEG+ + + L S+ + I D + ++ + L SLN+ +I
Sbjct: 208 LTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNRIGDEGAKSISEMKQLTSLNISENRIG 267
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D G ++ L LT LD+ RI D A ++ K L+SL+I G + D GVK I +++
Sbjct: 268 DEGAIFISELKQLTSLDICYNRIGDKEAKFICEMKQLKSLDIGGNQIGDEGVKFISEMTR 327
Query: 398 LTLLNL 403
LT L++
Sbjct: 328 LTSLDI 333
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 105/203 (51%), Gaps = 1/203 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I N I D +K +S + L SL I + + D G+ + +++LT L + G
Sbjct: 133 MKQLTSLDIS-NNRIGDEGVKFISEMKQLISLGIYNNGIGDEGVKSIIEMKRLTSLGIGG 191
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ S+S + L L++N Q D+G + ++ L L + N I DE +
Sbjct: 192 NQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNRIGDEGAKSIS 251
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L SLN+ IGDEG + ++ L L S+++ + I D + + + LKSL++
Sbjct: 252 EMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIGDKEAKFICEMKQLKSLDIGG 311
Query: 334 RQITDTGLAALTSLTGLTHLDLF 356
QI D G+ ++ +T LT LD+F
Sbjct: 312 NQIGDEGVKFISEMTRLTSLDIF 334
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 107/205 (52%), Gaps = 1/205 (0%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ + L L+++ ++ D+G + S++ L L + N I DE + + + L SL +
Sbjct: 130 ITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIGDEGVKSIIEMKRLTSLGI 189
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
IGDEG +++ + L S++++ D ++ + + L SL + +I D G +
Sbjct: 190 GGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNRIGDEGAKS 249
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT L++ RI D GA ++ K L SL+IC + D K I ++ L L++
Sbjct: 250 ISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIGDKEAKFICEMKQLKSLDI 309
Query: 404 SQNCNLTDKTLELISGLTGLVSLNV 428
N + D+ ++ IS +T L SL++
Sbjct: 310 GGN-QIGDEGVKFISEMTRLTSLDI 333
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 5/179 (2%)
Query: 34 QDLCLGQYP-GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
Q + LG Y G+ D+ + I + L S+ + G+ + D G + + L SLD N
Sbjct: 159 QLISLGIYNNGIGDEGVKSII-EMKRLTSLGIGGNQIGDEGAKSISEMKQLTSLDINNN- 216
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q D G++ + + LTSL+ NN I +G K+ + + L L++ G + +
Sbjct: 217 QTGDEGVKFICEMKQLTSLTI-YNNRIGDEGAKSISEMKQLTSLNISENRIGDEGAIFIS 275
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L +L SL+I + N I D + K + + LKSL I +++ D G+ ++ + +LT L++
Sbjct: 276 ELKQLTSLDICY-NRIGDKEAKFICEMKQLKSLDIGGNQIGDEGVKFISEMTRLTSLDI 333
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 27/230 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
++ L S+D+S + + D G+ + + L SL + I D G++ + + LTSL
Sbjct: 131 TEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGI-YNNGIGDEGVKSIIEMKRLTSLGI 189
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K+ + + L LD+ G+ + + +L SL I + N I D
Sbjct: 190 -GGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTI-YNNRIGDEGA 247
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS +++ D G ++ L++LT L++ C + + + F
Sbjct: 248 KSISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDI--------CYNRIGDKEAKFI- 298
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
CE + LK L++G N+I DE + + +T L SL++
Sbjct: 299 -----------CE----MKQLKSLDIGGNQIGDEGVKFISEMTRLTSLDI 333
>gi|158298684|ref|XP_318863.4| AGAP009775-PA [Anopheles gambiae str. PEST]
gi|157014003|gb|EAA14468.4| AGAP009775-PA [Anopheles gambiae str. PEST]
Length = 547
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 28/316 (8%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH----GGLVNLKGLMKLES 159
GL L ++ RNN IT M+ F G NL++LDL R R+ G +LK L L
Sbjct: 110 GLVRLKTIDLSRNN-ITQLAMENFRGQDNLIELDLSR-NRLDNIASGTFAHLKELKTLHL 167
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
++ N IT+ + + L LK L +S + + D K +Q L +L + GC ++
Sbjct: 168 ID----NSITEFNQRLFLHLAKLKHLDLSYNSIDDLPPEVFKDVQDLKILRVRGCRLSNI 223
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLT 276
+ L L L+L + Q+ E+F + L+ L L N+ I DE +H KGLT
Sbjct: 224 NPQIYNILSHLTELDLGQNQIKFLDKEEFKDLRHLQTLRLDGNQLSVIIDELFIHQKGLT 283
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK---SLNLDA 333
L+ I D NL LT L++ + I R L L +L ++ LD
Sbjct: 284 LLDISRNRLAKIADRAFENLANLTFLDASYNKLSHIEPVCFRPLRNLQTLNISGNIQLDL 343
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVK 390
++ DT + + ++TGL + D G L F++L +L + G + + ++
Sbjct: 344 GEMEDT-INVIKNITGLM--------VADMGTLPLNLFSPFRHLSALNLSGNHIDNFTLQ 394
Query: 391 HIKDLSSLTLLNLSQN 406
I+ L+ L L+LS+N
Sbjct: 395 IIEPLNQLEFLDLSRN 410
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 131/325 (40%), Gaps = 24/325 (7%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+ KLE L I N + D + GL LK++ +S + +T + +G L L+
Sbjct: 84 FQYFKKLEILRIIDANVPSVGD-RSFWGLVRLKTIDLSRNNITQLAMENFRGQDNLIELD 142
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L + + + L L L+L +++ F + LK L+L +N I D
Sbjct: 143 LSRNRLDNIASGTFAHLKELKTLHLIDNSITEFNQRLFLHLAKLKHLDLSYNSIDDLPPE 202
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
K + +L+ L + C + + L++L ++L I + L L++L
Sbjct: 203 VFKDVQDLKILRVRGCRLSNINPQIYNILSHLTELDLGQNQIKFLDKEEFKDLRHLQTLR 262
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
LD Q++ GLT LD+ R+ N NL L+ L+
Sbjct: 263 LDGNQLSVIIDELFIHQKGLTLLDISRNRLAKIADRAFENLANLTFLDASYNKLSHIEPV 322
Query: 391 HIKDLSSLTLLNLSQNCNL----TDKTLELISGLTGLV-------------------SLN 427
+ L +L LN+S N L + T+ +I +TGL+ +LN
Sbjct: 323 CFRPLRNLQTLNISGNIQLDLGEMEDTINVIKNITGLMVADMGTLPLNLFSPFRHLSALN 382
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTL 452
+S + I + L+ ++PL L L L
Sbjct: 383 LSGNHIDNFTLQIIEPLNQLEFLDL 407
>gi|91085811|ref|XP_974701.1| PREDICTED: similar to partner of paired CG9952-PA [Tribolium
castaneum]
Length = 439
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 168/321 (52%), Gaps = 28/321 (8%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM-----KL 157
RG+ + LS R++ QG+ NL L+L C + G V + L
Sbjct: 121 RGIKRVQVLSLRKSLRDVIQGIP------NLESLNLRGCYNV--GDVGISHAFVADSPTL 172
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
L++ C +TD+ + ++ L NL+ L++ CS VT+SG+ + GL+KL LNL C
Sbjct: 173 TELDLSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSC 232
Query: 215 -PVTAACLDSL-SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLV 270
V + L S SL +L L CQ LSD+ + + + SL +NL F ITD L
Sbjct: 233 WHVGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLK 292
Query: 271 HLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLA-GLSSL 326
HL +TNL LNL SC I D G+ L G + + S+++SF I D +L ++ GL +L
Sbjct: 293 HLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNL 352
Query: 327 KSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-G 382
++L + A Q++D GLA + SL L L++ +R+TD G + + L+ +++ G
Sbjct: 353 RNLLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCT 412
Query: 383 GLTDAGVKHIKDLSSLTLLNL 403
+T G++ I L L++LNL
Sbjct: 413 RITTVGLERIMKLPQLSVLNL 433
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 160/318 (50%), Gaps = 39/318 (12%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
++G+ LESLN++ C + D + ++ L L +S C +VTD+ + + + L+ L
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 198
Query: 207 TLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
+L L GC VT + L ++ L L LNL C +
Sbjct: 199 EVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCW-----------------------HV 235
Query: 265 TDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLA 321
D+ + HL G +LE L L C + DE L + TGLT+L SINLSF I+D L+ LA
Sbjct: 236 GDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLA 295
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSL 377
+++L+ LNL + I+DTG+A L + ++ LD+ F +I D ++ + NLR+L
Sbjct: 296 KMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNL 355
Query: 378 EICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRIT 434
+ L+D G+ I + L L LN+ Q +TDK L I+ L L +++ +RIT
Sbjct: 356 LMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRIT 415
Query: 435 SAGLRHLKPLKNLRSLTL 452
+ GL + L L L L
Sbjct: 416 TVGLERIMKLPQLSVLNL 433
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D+ + +AS SL + L ++D L H ++L S++ +FC+ I+D GL+HL
Sbjct: 235 VGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHL 294
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
++NL L+ R + I+ GM A G + LD+ C +I LV++ +GL L +
Sbjct: 295 AKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRN 354
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-V 216
L + C + K + L +L++L I CS+VTD G+ + + L +L ++L GC +
Sbjct: 355 LLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRI 414
Query: 217 TAACLDSLSALGSLFYLNL 235
T L+ + L L LNL
Sbjct: 415 TTVGLERIMKLPQLSVLNL 433
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 98/196 (50%), Gaps = 38/196 (19%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
++G+ NLESLNL C +GD G+ S ++D +L L+
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGI--------------SHAFVADSP--------TLTELD 176
Query: 331 LD-ARQITDTGLAALTS-LTGLTHLDLFG-ARITDSG----AAYLRNFK--NLRSLEICG 381
L +Q+TDT L + L L L+L G + +T+SG A L+ K NLRS G
Sbjct: 177 LSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVG 236
Query: 382 GGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLR 439
D G++H+ SL L L L+D+ L+ +GLT L+S+N+S IT +GL+
Sbjct: 237 ----DQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLK 292
Query: 440 HLKPLKNLRSLTLESC 455
HL + NLR L L SC
Sbjct: 293 HLAKMTNLRELNLRSC 308
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 134/279 (48%), Gaps = 60/279 (21%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSK-IGSL 254
++G+ L LNL GC S + + +L L+L+ C Q++D + ++ + +L
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 198
Query: 255 KVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNL-TGLTNLESINLS-F 309
+VL LG + +T+ L+ + GL L+ LNL SC +GD+G+ +L +G +LE + L
Sbjct: 199 EVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQDC 258
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
+SD +L+ GL+SL S+NL F ITDSG
Sbjct: 259 QKLSDEALKHATGLTSLISINLS-----------------------FCVSITDSG----- 290
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNV 428
+KH+ +++L LNL N++D + ++ G + + SL+V
Sbjct: 291 -------------------LKHLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDV 331
Query: 429 SN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
S +I L H+ + L NLR+L + +C+++ + ++
Sbjct: 332 SFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKI 370
>gi|320165522|gb|EFW42421.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 743
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 156/346 (45%), Gaps = 2/346 (0%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+ NN+IT AFAGL L +L+L+ GL L L + + N IT
Sbjct: 64 YLNNNSITIISASAFAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNY-NQITSFP 122
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
GLT L+ L ++ +++T + L L+L +T+ D+ L L
Sbjct: 123 ADTFIGLTFLRELFLNYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGLTMLKN 182
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L ++ Q + F+ + +L L+L N+I GLT L L+L + I +
Sbjct: 183 LYMDFNQFTSIPANTFTGLTALTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQITNTS 242
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ TGLT L ++L+ I+ S +GL++L+ LNL+ QIT + LT L +
Sbjct: 243 VDAFTGLTALTHLDLTDNRITTISASTFSGLTALRLLNLNGNQITTISANTFSGLTTLNY 302
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L L +I+ + L + + +T L++LT+L+LS N +T
Sbjct: 303 LFLTTNQISSISTSAFAGLTVLTEMSLNNNSITSISANTFAVLTALTILDLSDN-QITSI 361
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ + LT L +L++++++ITS L L L LE+ +T
Sbjct: 362 PADAFASLTALDTLSLNDNQITSIPANAFTSLTTLHRLPLENNPLT 407
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 131/294 (44%), Gaps = 1/294 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT +GLT L L++ +++T GL L L L +T+ D+
Sbjct: 68 NSITIISASAFAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNYNQITSFPADTFI 127
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L L L LN Q++ F+ +L L+L N IT GLT L++L +D
Sbjct: 128 GLTFLRELFLNYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGLTMLKNLYMDF 187
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
TGLT L ++L I+ GL++L L+L QIT+T + A T
Sbjct: 188 NQFTSIPANTFTGLTALTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQITNTSVDAFT 247
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
LT LTHLDL RIT A+ LR L + G +T L++L L L+
Sbjct: 248 GLTALTHLDLTDNRITTISASTFSGLTALRLLNLNGNQITTISANTFSGLTTLNYLFLTT 307
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
N ++ + +GLT L ++++N+ ITS L L L L ++T+
Sbjct: 308 N-QISSISTSAFAGLTVLTEMSLNNNSITSISANTFAVLTALTILDLSDNQITS 360
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 132/321 (41%), Gaps = 29/321 (9%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L++N QI+ + GL+ L L F N IT+ AFA L++LDL
Sbjct: 113 LNYN---QITSFPADTFIGLTFLREL-FLNYNQITSIPTSAFASQTALIQLDLRS----- 163
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
N IT GLT LK+L + ++ T GL
Sbjct: 164 --------------------NLITSFPADTFIGLTMLKNLYMDFNQFTSIPANTFTGLTA 203
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT L+L + + ++ + L +L +L+L Q+++ + F+ + +L L+L N IT
Sbjct: 204 LTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQITNTSVDAFTGLTALTHLDLTDNRIT 263
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
GLT L LNL+ I +GLT L + L+ IS S AGL+
Sbjct: 264 TISASTFSGLTALRLLNLNGNQITTISANTFSGLTTLNYLFLTTNQISSISTSAFAGLTV 323
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L ++L+ IT LT LT LDL +IT A + L +L + +T
Sbjct: 324 LTEMSLNNNSITSISANTFAVLTALTILDLSDNQITSIPADAFASLTALDTLSLNDNQIT 383
Query: 386 DAGVKHIKDLSSLTLLNLSQN 406
L++L L L N
Sbjct: 384 SIPANAFTSLTTLHRLPLENN 404
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 86/207 (41%), Gaps = 1/207 (0%)
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
G+ L L N IT GLT L L L + I GLT L + L++
Sbjct: 58 GTTTQLYLNNNSITIISASAFAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNYNQ 117
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
I+ GL+ L+ L L+ QIT +A S T L LDL IT A
Sbjct: 118 ITSFPADTFIGLTFLRELFLNYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGL 177
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
L++L + T L++LT L+L N + +GLT L L+++N+
Sbjct: 178 TMLKNLYMDFNQFTSIPANTFTGLTALTFLSLHTN-QIASIPANTFTGLTALTFLDLTNN 236
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVT 458
+IT+ + L L L L ++T
Sbjct: 237 QITNTSVDAFTGLTALTHLDLTDNRIT 263
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 102/256 (39%), Gaps = 25/256 (9%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G+ L LN ++ F+ + +L L L N+IT GLT L L L+
Sbjct: 58 GTTTQLYLNNNSITIISASAFAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNYNQ 117
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA------------------------GL 323
I GLT L + L++ I+ A GL
Sbjct: 118 ITSFPADTFIGLTFLRELFLNYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGL 177
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
+ LK+L +D Q T T LT LT L L +I A L L++
Sbjct: 178 TMLKNLYMDFNQFTSIPANTFTGLTALTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQ 237
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
+T+ V L++LT L+L+ N +T + SGLT L LN++ ++IT+
Sbjct: 238 ITNTSVDAFTGLTALTHLDLTDN-RITTISASTFSGLTALRLLNLNGNQITTISANTFSG 296
Query: 444 LKNLRSLTLESCKVTA 459
L L L L + ++++
Sbjct: 297 LTTLNYLFLTTNQISS 312
>gi|270010132|gb|EFA06580.1| hypothetical protein TcasGA2_TC009492 [Tribolium castaneum]
Length = 474
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 168/321 (52%), Gaps = 28/321 (8%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM-----KL 157
RG+ + LS R++ QG+ NL L+L C + G V + L
Sbjct: 156 RGIKRVQVLSLRKSLRDVIQGIP------NLESLNLRGCYNV--GDVGISHAFVADSPTL 207
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
L++ C +TD+ + ++ L NL+ L++ CS VT+SG+ + GL+KL LNL C
Sbjct: 208 TELDLSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSC 267
Query: 215 -PVTAACLDSL-SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLV 270
V + L S SL +L L CQ LSD+ + + + SL +NL F ITD L
Sbjct: 268 WHVGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLK 327
Query: 271 HLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFT-GISDGSLRKLA-GLSSL 326
HL +TNL LNL SC I D G+ L G + + S+++SF I D +L ++ GL +L
Sbjct: 328 HLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNL 387
Query: 327 KSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-G 382
++L + A Q++D GLA + SL L L++ +R+TD G + + L+ +++ G
Sbjct: 388 RNLLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCT 447
Query: 383 GLTDAGVKHIKDLSSLTLLNL 403
+T G++ I L L++LNL
Sbjct: 448 RITTVGLERIMKLPQLSVLNL 468
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 160/318 (50%), Gaps = 39/318 (12%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
++G+ LESLN++ C + D + ++ L L +S C +VTD+ + + + L+ L
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 233
Query: 207 TLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
+L L GC VT + L ++ L L LNL C +
Sbjct: 234 EVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCW-----------------------HV 270
Query: 265 TDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLA 321
D+ + HL G +LE L L C + DE L + TGLT+L SINLSF I+D L+ LA
Sbjct: 271 GDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLA 330
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSL 377
+++L+ LNL + I+DTG+A L + ++ LD+ F +I D ++ + NLR+L
Sbjct: 331 KMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNL 390
Query: 378 EICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRIT 434
+ L+D G+ I + L L LN+ Q +TDK L I+ L L +++ +RIT
Sbjct: 391 LMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRIT 450
Query: 435 SAGLRHLKPLKNLRSLTL 452
+ GL + L L L L
Sbjct: 451 TVGLERIMKLPQLSVLNL 468
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D+ + +AS SL + L ++D L H ++L S++ +FC+ I+D GL+HL
Sbjct: 270 VGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHL 329
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
++NL L+ R + I+ GM A G + LD+ C +I LV++ +GL L +
Sbjct: 330 AKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRN 389
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-V 216
L + C + K + L +L++L I CS+VTD G+ + + L +L ++L GC +
Sbjct: 390 LLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRI 449
Query: 217 TAACLDSLSALGSLFYLNL 235
T L+ + L L LNL
Sbjct: 450 TTVGLERIMKLPQLSVLNL 468
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 98/196 (50%), Gaps = 38/196 (19%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
++G+ NLESLNL C +GD G+ S ++D +L L+
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGI--------------SHAFVADSP--------TLTELD 211
Query: 331 LD-ARQITDTGLAALTS-LTGLTHLDLFG-ARITDSG----AAYLRNFK--NLRSLEICG 381
L +Q+TDT L + L L L+L G + +T+SG A L+ K NLRS G
Sbjct: 212 LSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVG 271
Query: 382 GGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLR 439
D G++H+ SL L L L+D+ L+ +GLT L+S+N+S IT +GL+
Sbjct: 272 ----DQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLK 327
Query: 440 HLKPLKNLRSLTLESC 455
HL + NLR L L SC
Sbjct: 328 HLAKMTNLRELNLRSC 343
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 134/279 (48%), Gaps = 60/279 (21%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSK-IGSL 254
++G+ L LNL GC S + + +L L+L+ C Q++D + ++ + +L
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 233
Query: 255 KVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNL-TGLTNLESINLS-F 309
+VL LG + +T+ L+ + GL L+ LNL SC +GD+G+ +L +G +LE + L
Sbjct: 234 EVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQDC 293
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
+SD +L+ GL+SL S+NL F ITDSG
Sbjct: 294 QKLSDEALKHATGLTSLISINLS-----------------------FCVSITDSG----- 325
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNV 428
+KH+ +++L LNL N++D + ++ G + + SL+V
Sbjct: 326 -------------------LKHLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDV 366
Query: 429 SN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
S +I L H+ + L NLR+L + +C+++ + ++
Sbjct: 367 SFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKI 405
>gi|397499401|ref|XP_003820442.1| PREDICTED: F-box/LRR-repeat protein 14 [Pan paniscus]
Length = 561
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 172/332 (51%), Gaps = 41/332 (12%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ +ESLN+ C +TD+ + + + +L++L +S C ++TDS + YLKGL
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 305
Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG 260
+ +L L GC L L L LNL C+ LSD G IG L +
Sbjct: 306 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVG------IGHLAGMTRS 356
Query: 261 FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSL 317
E G LE L L C + D L +++ GLT L +NLSF G ISD L
Sbjct: 357 AAE----------GCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGL 406
Query: 318 RKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFK 372
L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 407 LHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLD 465
Query: 373 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 430
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++
Sbjct: 466 GLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 525
Query: 431 -SRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+RIT GL + L L+ L L ++T ++
Sbjct: 526 CTRITKRGLERITQLPCLKVLNLGLWQMTDSE 557
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 175/335 (52%), Gaps = 48/335 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 305
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 306 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 365
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 366 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 425
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 426 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 484
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 485 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 521
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
DL+G RIT G + L+ L + +TD+
Sbjct: 522 DLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 556
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 228 RGIRRVQILSLRRSLSYVIQGM------ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 281
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 282 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 339
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 340 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 399
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRK 319
I+D L+HL + +L SLNL SC I D G+++L G L +++SF + D SL
Sbjct: 400 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 459
Query: 320 LA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLR 375
+A GL LKSL+L + I+D G+ + + GL L++ RITD G + + L
Sbjct: 460 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 519
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
+++ G +T G++ I L L +LNL
Sbjct: 520 GIDLYGCTRITKRGLERITQLPCLKVLNL 548
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 375 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 434
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 435 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 494
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 495 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGC-----------------------TRITK 531
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 532 RGLERITQLPCLKVLNLGLWQMTD 555
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 44/263 (16%)
Query: 224 LSALGSLFYLNLNRC-QLSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
+ + ++ LNL+ C L+D+G +IGSL+ LNL +ITD L + + L L
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 305
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQIT 337
E L L C N++ TG+ L GL LKSLNL + R ++
Sbjct: 306 EVLELGGCS------------------NITNTGL----LLIAWGLQRLKSLNLRSCRHLS 343
Query: 338 DTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLT 385
D G+ L +T GL L L ++TD ++ R LR +L CGG ++
Sbjct: 344 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-IS 402
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-K 442
DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++ +
Sbjct: 403 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 462
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
L L+SL+L SC ++ + I R+
Sbjct: 463 GLDGLKSLSLCSCHISDDGINRM 485
>gi|207743293|ref|YP_002259685.1| type III effector gala6 protein [Ralstonia solanacearum IPO1609]
gi|206594690|emb|CAQ61617.1| type III effector gala6 protein [Ralstonia solanacearum IPO1609]
Length = 625
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 127/457 (27%), Positives = 190/457 (41%), Gaps = 59/457 (12%)
Query: 11 FNELVYSRCLTEVSLEAFR--DCALQDLCLGQY--PGVNDKWMDVIASQGSSLLSVDLSG 66
+ L R E++LEA + ++ L +G+ GV++ + ++A++ L S+ L+G
Sbjct: 139 YPALKSVRFKGELTLEALKALPPGVEHLEIGRSTGSGVSNAGLALLATR--PLKSLSLNG 196
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++ G L C++L SL C I D L ++ SL N I G +A
Sbjct: 197 IEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGARA 254
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
AG LV L+L N I D L+ LKSL
Sbjct: 255 LAG-APLVSLNLHN-------------------------NGIGDEGALALATSGTLKSLN 288
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
S + + D+G+ LT LNL G + A +L SL L+L+ +L D G +
Sbjct: 289 ASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQ 348
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD---------------------- 284
+ SL LN+ NEI D+ L T L+SLNL
Sbjct: 349 VLAGSRSLTSLNVRNNEIGDDGTEALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELD 408
Query: 285 --SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+C I G L T++ S++L I D R +A + +L L+L I D G
Sbjct: 409 LRACAIDPYGASALARNTSVASLHLGSNRIGDSGARAIATIRTLTLLDLSRNNIHDAGAQ 468
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
L L L+L I D G A L L SL + + G +H+ ++LT L+
Sbjct: 469 VLAGNDSLMSLNLDDNEIGDDGTAALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELD 528
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
LS+N + + E +S T L +LNVS + I AG R
Sbjct: 529 LSEN-RIGPEGAEALSLSTVLTTLNVSGNAIGEAGAR 564
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 166/410 (40%), Gaps = 52/410 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL S+ L+G + D L ++ SLD + + I G L G + L SL+ N
Sbjct: 211 ASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNM-IGPDGARALAG-APLVSLNLH-N 267
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I +G A A L L+ G++ L LN+ N I + + L
Sbjct: 268 NGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLA-GNMIGPAGARAL 326
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL- 235
T+L L +S +++ D+G L G + LT LN+ + ++L+ +L LNL
Sbjct: 327 RRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIGDDGTEALARNTTLKSLNLS 386
Query: 236 -NR----------------------CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
NR C + G ++ S+ L+LG N
Sbjct: 387 YNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTSVASLHLGSNR--------- 437
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
IGD G + + L ++LS I D + LAG SL SLNLD
Sbjct: 438 ---------------IGDSGARAIATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLD 482
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+I D G AAL LT L+L RI +GA +L L L++ + G + +
Sbjct: 483 DNEIGDDGTAALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRIGPEGAEAL 542
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ LT LN+S N T L SL+ N+R+ AG + L+
Sbjct: 543 SLSTVLTTLNVSGNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGAKMLE 592
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 134/309 (43%), Gaps = 39/309 (12%)
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
V KG + LE+L + P G+ +L+ + + S V+++G+A L + L
Sbjct: 145 VRFKGELTLEALKA----------LPP--GVEHLEIGRSTGSGVSNAGLALLA-TRPLKS 191
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L+L G + A L+ SL L+L C + D ++ S+ L+L N I +
Sbjct: 192 LSLNGIEIDAEGARLLATCASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIGPDG 251
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L G L SLNL + GIGDEG + L L+S+N S GI D + A + L
Sbjct: 252 ARALAGAP-LVSLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQ 310
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
LNL I G AL T LT LDL R+ D+GA L ++L SL +
Sbjct: 311 LNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNV--------- 361
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
+N + D E ++ T L SLN+S +RI G L L
Sbjct: 362 ----------------RNNEIGDDGTEALARNTTLKSLNLSYNRIGLQGAGALGGNTTLS 405
Query: 449 SLTLESCKV 457
L L +C +
Sbjct: 406 ELDLRACAI 414
>gi|326430775|gb|EGD76345.1| variable lymphocyte receptor [Salpingoeca sp. ATCC 50818]
Length = 1124
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 108/389 (27%), Positives = 165/389 (42%), Gaps = 23/389 (5%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKA--FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GLS LT+L+ R + Q + A F GL +L +LDL GL +ESLN
Sbjct: 229 GLSALTTLNLNR---VPLQTLSAQTFQGLSSLTELDLSNKKIAAIPTQAFVGLSSIESLN 285
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++ N ++ +S + L SL +S +T L L + L+G P+
Sbjct: 286 LQG-NPLSKLSEGAISDMPKLTSLDLSNLAITAIPARSFDNLAALGNITLQGNPIAQLTN 344
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
S S++ SL L+L+RC+L+ F+ L L L N IT L+GL+ L +
Sbjct: 345 ASFSSVPSLHTLDLSRCKLTSVPAAAFTAATRLSALTLARNAITTIAARALRGLSKLTAF 404
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
++ + + GLT+L ++NL+ T + L L +L S++ +
Sbjct: 405 DISNNPLRALPASIFQGLTSLATLNLAHTNCTLLPPALLTPLHALTSISAAGTPLRAIAT 464
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTL 400
L L HLDL ARIT L N L L + G L + + DLSSLT
Sbjct: 465 GTFDGLPALQHLDLSNARITALAPHSLHNLPRLHDLALGGNPLANISSHALGGDLSSLTT 524
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L+LS + +SG T L +L + ++ IT+ L L +L + S A
Sbjct: 525 LDLSA-LRIAAIAPHAMSGATNLTTLLLDHNAITALAADTFAGLSRLATLRITSNPALAT 583
Query: 461 ---------------DIKRLQSRDLPNLV 474
D+ RL +LP+ V
Sbjct: 584 LAGGAFDGLSALATLDLSRLPVAELPSHV 612
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 161/363 (44%), Gaps = 11/363 (3%)
Query: 75 IHLKDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
+ D + + LDF N +S ++ L + + NN IT+ AFA L
Sbjct: 76 LQFDDGTPIAQLDFSNNLISMVSAAAFQNAVSLQHTLTALILDNNPITSIEAGAFATLTA 135
Query: 133 LVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L L++ ++ G L N+ + N + GLT+L+SL ++ +
Sbjct: 136 LNHLNMSSL-KLAGALSGNMFSTLTALLTLQLDGNQLDTLPANAFDGLTSLQSLNLANNP 194
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
++ +GL L L+L G P++ S + L +L LNLNR L + F +
Sbjct: 195 ISILNADTFQGLSSLLSLSLAGAPISTLSSSSFAGLSALTTLNLNRVPLQTLSAQTFQGL 254
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLV-NLTGLTNLESINLS 308
SL L+L +I GL+++ESLNL + EG + ++ LT+L+ NL+
Sbjct: 255 SSLTELDLSNKKIAAIPTQAFVGLSSIESLNLQGNPLSKLSEGAISDMPKLTSLDLSNLA 314
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
T I R L++L ++ L I A+ +S+ L LDL ++T AA
Sbjct: 315 ITAIPA---RSFDNLAALGNITLQGNPIAQLTNASFSSVPSLHTLDLSRCKLTSVPAAAF 371
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
L +L + +T + ++ LS LT ++S N L + GLT L +LN+
Sbjct: 372 TAATRLSALTLARNAITTIAARALRGLSKLTAFDISNNP-LRALPASIFQGLTSLATLNL 430
Query: 429 SNS 431
+++
Sbjct: 431 AHT 433
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 111/435 (25%), Positives = 179/435 (41%), Gaps = 51/435 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQG-----SSLLSVDLSGSDVTDSGLIHLKDCSNLQSL- 86
L DL LG P N I+S SSL ++DLS + + +NL +L
Sbjct: 497 LHDLALGGNPLAN------ISSHALGGDLSSLTTLDLSALRIAAIAPHAMSGATNLTTLL 550
Query: 87 -DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
D N I+ + GLS L +L N A+ AF GL L LDL R
Sbjct: 551 LDHN---AITALAADTFAGLSRLATLRITSNPALATLAGGAFDGLSALATLDLSRLPVAE 607
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGL 203
G+ L+S+ + + T ++P + L+++ ++ ++ ++ L
Sbjct: 608 LPSHVFAGMSSLQSVVLTGVDLHT---LQPNAFANLSHVAAISLAGMSLSSLPSHAFGAL 664
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 262
LT L+L+ P+ + D+ + L ++ FS +++ LNL N
Sbjct: 665 PALTSLSLDNNPLASLNTDTFAGPLPLLTTLDLSSHGITALPPRTFSGATAVRSLNLAHN 724
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS---FTGISDGSLRK 319
IT GL++ L L I + GL L S++LS TGI GS
Sbjct: 725 AITTIAPDAFLGLSSATQLVLAGNPIAHVSAGSFAGLGALTSLDLSTSALTGIVSGS--- 781
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
+GL++L +L +D + + T L+ L HL + +T L ++R+L +
Sbjct: 782 FSGLANLTTLTVDTPHLRHLFPGSFTGLSSLHHLSIANTCVTALPDGVLSPLVHVRTLSL 841
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
L A V S+LT LSQ LV+L++SN+ +T+ G +
Sbjct: 842 RNSSLAGAAV------STLTFDGLSQ-----------------LVALDLSNNDMTAIGDK 878
Query: 440 HLKPLKNLRSLTLES 454
+PL R+L L S
Sbjct: 879 AFRPLSATRTLNLSS 893
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 139/335 (41%), Gaps = 43/335 (12%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA----CLDSLSALGSLF 231
+SG TNL +L + + +T GL +L L + P A D LSAL +L
Sbjct: 540 MSGATNLTTLLLDHNAITALAADTFAGLSRLATLRITSNPALATLAGGAFDGLSALATL- 598
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNL-----------GFNEITDECLVHLKGLTNLES 280
+L+R +++ F+ + SL+ + L F ++ + L G++ L S
Sbjct: 599 --DLSRLPVAELPSHVFAGMSSLQSVVLTGVDLHTLQPNAFANLSHVAAISLAGMS-LSS 655
Query: 281 LNLDSCGIGDEGLVNLTGLT----NLESIN---------------LSFTGISDGSLRKLA 321
L + G L LT L+ L S+N LS GI+ R +
Sbjct: 656 LPSHAFG----ALPALTSLSLDNNPLASLNTDTFAGPLPLLTTLDLSSHGITALPPRTFS 711
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
G ++++SLNL IT A L+ T L L G I A L SL++
Sbjct: 712 GATAVRSLNLAHNAITTIAPDAFLGLSSATQLVLAGNPIAHVSAGSFAGLGALTSLDLST 771
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
LT L++LT L + +L +GL+ L L+++N+ +T+ L
Sbjct: 772 SALTGIVSGSFSGLANLTTLTV-DTPHLRHLFPGSFTGLSSLHHLSIANTCVTALPDGVL 830
Query: 442 KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
PL ++R+L+L + + + L L LV+
Sbjct: 831 SPLVHVRTLSLRNSSLAGAAVSTLTFDGLSQLVAL 865
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 109/261 (41%), Gaps = 42/261 (16%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
IT + SG T ++SL ++ + +T GL T L L G P+ S + L
Sbjct: 702 ITALPPRTFSGATAVRSLNLAHNAITTIAPDAFLGLSSATQLVLAGNPIAHVSAGSFAGL 761
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVL-------------------NLGFNEITDEC 268
G+L L+L+ L+ FS + +L L +L I + C
Sbjct: 762 GALTSLDLSTSALTGIVSGSFSGLANLTTLTVDTPHLRHLFPGSFTGLSSLHHLSIANTC 821
Query: 269 LVHLK-----GLTNLESLNLDSCGIGDEGLVNLT--GLTNLESINLS---FTGISDGSLR 318
+ L L ++ +L+L + + + LT GL+ L +++LS T I D + R
Sbjct: 822 VTALPDGVLSPLVHVRTLSLRNSSLAGAAVSTLTFDGLSQLVALDLSNNDMTAIGDKAFR 881
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL--FGARITDSGAAYLRNFKNLRS 376
L S+ ++LNL + + + AA G+ L + + + A L + +LRS
Sbjct: 882 PL---SATRTLNLSSNALGNFTQAASHVFKGMKALQVLDLSSNPFSTPPANLASLSSLRS 938
Query: 377 -------LEICG-GGLTDAGV 389
L+ CG L D+GV
Sbjct: 939 VCMGDVPLDCCGLEDLRDSGV 959
>gi|15896519|ref|NP_349868.1| ChW repeat-containing protein [Clostridium acetobutylicum ATCC 824]
gi|337738478|ref|YP_004637925.1| ChW repeat-containing protein [Clostridium acetobutylicum DSM 1731]
gi|384459988|ref|YP_005672408.1| putative surface protein, responsible for cell interaction;
contains cell adhesion domain and ChW-repeats
[Clostridium acetobutylicum EA 2018]
gi|15026350|gb|AAK81208.1|AE007823_2 Possible surface protein, responsible for cell interaction;
contains cell adhesion domain and ChW-repeats
[Clostridium acetobutylicum ATCC 824]
gi|325510677|gb|ADZ22313.1| putative surface protein, responsible for cell interaction;
contains cell adhesion domain and ChW-repeats
[Clostridium acetobutylicum EA 2018]
gi|336291611|gb|AEI32745.1| ChW repeat-containing protein [Clostridium acetobutylicum DSM 1731]
Length = 874
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 104/333 (31%), Positives = 171/333 (51%), Gaps = 34/333 (10%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+G + +L + KL +L I N TD D+ P+ LTNL L I SK+++ +
Sbjct: 540 YGNVTDLTPISKLSNLKILSLNGDTDIDISPIGNLTNLNQLDIGESKISNINVLNKLNNL 599
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNL---NRCQLSDDGCEKFSKIGSLKVLNLGF 261
+L+ + S LGSL L L + C SD +K+ +L ++L +
Sbjct: 600 NYLILDKN------TSIKDFSPLGSLTNLTLLQASYCNFSD--LTPLAKMKNLSRVSLNY 651
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
N IT + LK TNL L L I D + + LTNLESI+LS+ +++ + LA
Sbjct: 652 NNIT--SIEPLKSSTNLVDLVLSGNKISD--ITPVANLTNLESISLSYNQVNN--ISSLA 705
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEIC 380
L+ LKSL LD TG++ ++SL+GLT+L+ G + + L+N NL +L+I
Sbjct: 706 KLTKLKSLMLD-----HTGISDISSLSGLTNLNYLGVQDNNIEDITSLKNLTNLANLKIS 760
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
+++ V I +L++LTLL+++ N + I T L+SL++ +++++ +
Sbjct: 761 QNKISN--VDAIGNLTNLTLLDMNNN---QISNINAIKNSTKLISLSMHHNKVSD--ISA 813
Query: 441 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
L L NL SL L + + ND+ L +DL +L
Sbjct: 814 LSKLTNLESLNLGNNPI--NDVTPL--KDLSHL 842
>gi|149175123|ref|ZP_01853746.1| hypothetical protein PM8797T_25626 [Planctomyces maris DSM 8797]
gi|148846101|gb|EDL60441.1| hypothetical protein PM8797T_25626 [Planctomyces maris DSM 8797]
Length = 1079
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 122/234 (52%), Gaps = 7/234 (2%)
Query: 239 QLSDDGCEKF------SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
QL+ +G +F +K GS +++ L +T E L L+ L+ L + +GDE
Sbjct: 36 QLAVEGLRRFCTNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGDEA 95
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
L+ + LTNL+++ LS + + D L L L+ L+ L LD ++TD GL L+SL L
Sbjct: 96 LLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKV 155
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L L +TD G L + NL L + G ++DAG+K + +L L +L L++ +T
Sbjct: 156 LSLRNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTA-ITGS 214
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
L ++ L L L+++ +++ + L L L+ L ++ + + I++L+
Sbjct: 215 QLSALNTLESLEHLSLNRTKLQPVVVDALSGLTQLKGLEIQYTGLGESSIQQLK 268
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 109/215 (50%), Gaps = 1/215 (0%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
GS + L++ ++ + + + L L + + DE L++++ LTNL++L L
Sbjct: 55 GSARLVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGDEALLYIRDLTNLDTLMLSESA 114
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+GD GL L L LE + L T ++D L+ L+ L LK L+L +TD G+ L L
Sbjct: 115 VGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKVLSLRNLNVTDQGMQTLADL 174
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L L L G +++D+G L K L+ L + +T + + + L SL L+L++
Sbjct: 175 NNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGSQLSALNTLESLEHLSLNR-T 233
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L ++ +SGLT L L + + + + ++ LK
Sbjct: 234 KLQPVVVDALSGLTQLKGLEIQYTGLGESSIQQLK 268
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 122/264 (46%), Gaps = 9/264 (3%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN---- 161
+ + R + +G++ F + K R R+ V L+ L +LE
Sbjct: 24 EKVAPVEARTPEQLAVEGLRRFCTNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDY 83
Query: 162 -IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
C + D + + LTNL +L +S S V DSG++ LK L KL L L+ VT A
Sbjct: 84 LAMVCPHLGDEALLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAG 143
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L LS+L L L+L ++D G + + + +L+VL L +++D L L L L+
Sbjct: 144 LQHLSSLKQLKVLSLRNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKI 203
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L L I L L L +LE ++L+ T + + L+GL+ LK L + Q T G
Sbjct: 204 LYLARTAITGSQLSALNTLESLEHLSLNRTKLQPVVVDALSGLTQLKGLEI---QYTGLG 260
Query: 341 LAALTSLT-GLTHLDLFGARITDS 363
+++ L L ++F +D+
Sbjct: 261 ESSIQQLKRNLEKTNIFTGEKSDA 284
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 77/147 (52%), Gaps = 9/147 (6%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS S V DSGL LK + L+ L + +++D GL+HL L L LS R N +T QG
Sbjct: 110 LSESAVGDSGLSCLKKLNKLERLYLD-NTKVTDAGLQHLSSLKQLKVLSLRNLN-VTDQG 167
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
M+ A L NL L L GL +L L +L+ L + IT S + L+ L +L+
Sbjct: 168 MQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLA-RTAITGSQLSALNTLESLE 226
Query: 184 SLQISCSK----VTD--SGIAYLKGLQ 204
L ++ +K V D SG+ LKGL+
Sbjct: 227 HLSLNRTKLQPVVVDALSGLTQLKGLE 253
>gi|83748568|ref|ZP_00945588.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|83724776|gb|EAP71934.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
Length = 629
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 127/457 (27%), Positives = 190/457 (41%), Gaps = 59/457 (12%)
Query: 11 FNELVYSRCLTEVSLEAFR--DCALQDLCLGQY--PGVNDKWMDVIASQGSSLLSVDLSG 66
+ L R E++LEA + ++ L +G+ GV++ + ++A++ L S+ L+G
Sbjct: 143 YPALKSVRFKGELTLEALKALPPGVEHLEIGRSTGSGVSNAGLALLATR--PLKSLSLNG 200
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++ G L C++L SL C I D L ++ SL N I G +A
Sbjct: 201 IEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGARA 258
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
AG LV L+L N I D L+ LKSL
Sbjct: 259 LAG-APLVSLNLHN-------------------------NGIGDEGALALATSGTLKSLN 292
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
S + + D+G+ LT LNL G + A +L SL L+L+ +L D G +
Sbjct: 293 ASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQ 352
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD---------------------- 284
+ SL LN+ NEI D+ L T L+SLNL
Sbjct: 353 VLAGSRSLTSLNVRNNEIGDDGTEALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELD 412
Query: 285 --SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+C I G L T++ S++L I D R +A + +L L+L I D G
Sbjct: 413 LRACAIDPYGASALARNTSVASLHLGSNRIGDSGARAIATIRTLTLLDLSRNNIHDAGAQ 472
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
L L L+L I D G A L L SL + + G +H+ ++LT L+
Sbjct: 473 VLAGNDSLMSLNLDDNEIGDDGTAALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELD 532
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
LS+N + + E +S T L +LNVS + I AG R
Sbjct: 533 LSEN-RIGPEGAEALSLSTVLTTLNVSGNAIGEAGAR 568
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 166/410 (40%), Gaps = 52/410 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL S+ L+G + D L ++ SLD + + I G L G + L SL+ N
Sbjct: 215 ASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNM-IGPDGARALAG-APLVSLNLH-N 271
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I +G A A L L+ G++ L LN+ N I + + L
Sbjct: 272 NGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLA-GNMIGPAGARAL 330
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL- 235
T+L L +S +++ D+G L G + LT LN+ + ++L+ +L LNL
Sbjct: 331 RRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIGDDGTEALARNTTLKSLNLS 390
Query: 236 -NR----------------------CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
NR C + G ++ S+ L+LG N
Sbjct: 391 YNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTSVASLHLGSNR--------- 441
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
IGD G + + L ++LS I D + LAG SL SLNLD
Sbjct: 442 ---------------IGDSGARAIATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLD 486
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+I D G AAL LT L+L RI +GA +L L L++ + G + +
Sbjct: 487 DNEIGDDGTAALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRIGPEGAEAL 546
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ LT LN+S N T L SL+ N+R+ AG + L+
Sbjct: 547 SLSTVLTTLNVSGNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGAKMLE 596
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 134/309 (43%), Gaps = 39/309 (12%)
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
V KG + LE+L + P G+ +L+ + + S V+++G+A L + L
Sbjct: 149 VRFKGELTLEALKA----------LPP--GVEHLEIGRSTGSGVSNAGLALLA-TRPLKS 195
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L+L G + A L+ SL L+L C + D ++ S+ L+L N I +
Sbjct: 196 LSLNGIEIDAEGARLLATCASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIGPDG 255
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L G L SLNL + GIGDEG + L L+S+N S GI D + A + L
Sbjct: 256 ARALAGAP-LVSLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQ 314
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
LNL I G AL T LT LDL R+ D+GA L ++L SL +
Sbjct: 315 LNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNV--------- 365
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
+N + D E ++ T L SLN+S +RI G L L
Sbjct: 366 ----------------RNNEIGDDGTEALARNTTLKSLNLSYNRIGLQGAGALGGNTTLS 409
Query: 449 SLTLESCKV 457
L L +C +
Sbjct: 410 ELDLRACAI 418
>gi|320166209|gb|EFW43108.1| ephrin type-B receptor 3 [Capsaspora owczarzaki ATCC 30864]
Length = 1219
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 108/362 (29%), Positives = 155/362 (42%), Gaps = 14/362 (3%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
HL D ++L FN QI+ GL+ LT L NN IT FA L L +
Sbjct: 54 HLGD----RTLSFN---QITSISANAFAGLTALTDLQLNNNN-ITIIPDYTFANLPALTE 105
Query: 136 LDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L T I + GL L LN C IT + L+ L ++Q+S +++T
Sbjct: 106 LHLFFNPITSISAN--SFAGLTVLNLLNSYNCQ-ITSIAANAFTDLSKLTNMQMSGNQIT 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
G+ L +L L G +T+ + + L +L YL+L+ Q+S F + +
Sbjct: 163 SIAPNVFSGMSALKILYLNGNQITSISASAFTGLTALTYLSLDSNQISSIALNAFPGMSA 222
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
LK+L L N+IT L+ L+ L L+ I TGLT L + L I+
Sbjct: 223 LKILRLNINQITGISAGVFTDLSALKELWLNDNQITSISANAFTGLTALTFLRLYVNQIT 282
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
S L +L +L L +IT A T LT LT L L +IT A +
Sbjct: 283 SISPGAFTDLGALTTLILSTNKITSISENAFTGLTALTFLQLDANQITSISAGAFTDLGA 342
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L +L + +T L++LT L L QN L + +GLT L L + + I
Sbjct: 343 LTTLILSINTITSISANAFTGLTALTALYLQQN-QLDSISAIAFTGLTALRELWLQVNLI 401
Query: 434 TS 435
TS
Sbjct: 402 TS 403
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 141/344 (40%), Gaps = 29/344 (8%)
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
+LSF N IT+ AFAGL L L L N IT
Sbjct: 59 TLSF---NQITSISANAFAGLTALTDLQLNN-------------------------NNIT 90
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ L L L + + +T GL L LLN C +T+ ++ + L
Sbjct: 91 IIPDYTFANLPALTELHLFFNPITSISANSFAGLTVLNLLNSYNCQITSIAANAFTDLSK 150
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L + ++ Q++ FS + +LK+L L N+IT GLT L L+LDS I
Sbjct: 151 LTNMQMSGNQITSIAPNVFSGMSALKILYLNGNQITSISASAFTGLTALTYLSLDSNQIS 210
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
L G++ L+ + L+ I+ S LS+LK L L+ QIT A T LT
Sbjct: 211 SIALNAFPGMSALKILRLNINQITGISAGVFTDLSALKELWLNDNQITSISANAFTGLTA 270
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
LT L L+ +IT + L +L + +T L++LT L L N +
Sbjct: 271 LTFLRLYVNQITSISPGAFTDLGALTTLILSTNKITSISENAFTGLTALTFLQLDAN-QI 329
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
T + + L L +L +S + ITS L L +L L+
Sbjct: 330 TSISAGAFTDLGALTTLILSINTITSISANAFTGLTALTALYLQ 373
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 138/313 (44%), Gaps = 13/313 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L ++ +SG+ +T S L+ L N QI+ GL+ LT LS +
Sbjct: 149 SKLTNMQMSGNQITSIAPNVFSGMSALKILYLN-GNQITSISASAFTGLTALTYLSLD-S 206
Query: 117 NAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN--CITDSD 172
N I++ + AF G+ + +++L++ + T I G+ L +L W N IT
Sbjct: 207 NQISSIALNAFPGMSALKILRLNINQITGISAGV-----FTDLSALKELWLNDNQITSIS 261
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+GLT L L++ +++T L LT L L +T+ ++ + L +L +
Sbjct: 262 ANAFTGLTALTFLRLYVNQITSISPGAFTDLGALTTLILSTNKITSISENAFTGLTALTF 321
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L+ Q++ F+ +G+L L L N IT GLT L +L L +
Sbjct: 322 LQLDANQITSISAGAFTDLGALTTLILSINTITSISANAFTGLTALTALYLQQNQLDSIS 381
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ TGLT L + L I+ S + L++L + L+ T L ++H
Sbjct: 382 AIAFTGLTALRELWLQVNLITSISANAFSDLTTLVGIYLNRNPFTTLPPGLFKGLRNVSH 441
Query: 353 L--DLFGARITDS 363
L DL A+++ S
Sbjct: 442 LSRDLSTAQVSQS 454
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 1/244 (0%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T+ ++ + L +L L LN ++ F+ + +L L+L FN IT GL
Sbjct: 65 ITSISANAFAGLTALTDLQLNNNNITIIPDYTFANLPALTELHLFFNPITSISANSFAGL 124
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
T L LN +C I T L+ L ++ +S I+ + +G+S+LK L L+ Q
Sbjct: 125 TVLNLLNSYNCQITSIAANAFTDLSKLTNMQMSGNQITSIAPNVFSGMSALKILYLNGNQ 184
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
IT +A T LT LT+L L +I+ L+ L + +T DL
Sbjct: 185 ITSISASAFTGLTALTYLSLDSNQISSIALNAFPGMSALKILRLNINQITGISAGVFTDL 244
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
S+L L L+ N +T + +GLT L L + ++ITS L L +L L +
Sbjct: 245 SALKELWLNDN-QITSISANAFTGLTALTFLRLYVNQITSISPGAFTDLGALTTLILSTN 303
Query: 456 KVTA 459
K+T+
Sbjct: 304 KITS 307
>gi|326507660|dbj|BAK03223.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 454
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 124/424 (29%), Positives = 198/424 (46%), Gaps = 48/424 (11%)
Query: 82 NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+L+ LD + C ++ G+ + + L NL L+ +TA K F L L L LE
Sbjct: 41 SLRVLDMSTCRNVTHTGVSSVVKALPNLLELNLSYCCNVTASMGKCFQMLPKLQTLKLEG 100
Query: 141 CTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMK-PLSGLTNLKSLQISCSK-VTDSGI 197
C + GL ++ + L L++ C+ +TD+D+ +S L NL L I+C++ +TD +
Sbjct: 101 CKFMADGLKHIGISCVSLRELSLSKCSGVTDTDLSFVVSRLKNLLKLDITCNRNITDVSL 160
Query: 198 AYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEKFSKIG 252
A + L L +E C ++ + L +G L L++ L D+G + S
Sbjct: 161 AAITSSCHSLISLRIESCSHFSS--EGLRLIGKRCCHLEELDITDSDLDDEGLKALSGCS 218
Query: 253 SLKVLNLGF-NEITDECLVHL-KGLTNLESLNL-DSCGIGDEGLVNLT-GLTNLESINLS 308
L L +G I+D+ L+H+ K L ++L S GI DEG+ + G LESINLS
Sbjct: 219 KLSSLKIGICMRISDQGLIHIGKSCPELRDIDLYRSGGISDEGVTQIAQGCPMLESINLS 278
Query: 309 F-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFGA-RITDSG 364
+ T I+D SL L+ + L +L + I+ GL+ + L LD+ I D G
Sbjct: 279 YCTEITDVSLMSLSKCAKLNTLEIRGCPSISSAGLSEIAIGCRLLAKLDVKKCFAINDVG 338
Query: 365 AAYLRNFKN-LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG- 422
+L F + LR + + +TD G LL+LS C L + T+ ++G+T
Sbjct: 339 MFFLSQFSHSLRQINLSYCSVTDIG-----------LLSLSSICGLQNMTIVHLAGITPN 387
Query: 423 --LVSLNVSN--SRIT-SAGLRHLKPLKNLRSLTLESC---------KVTAN--DIKRLQ 466
L +L VS +R+ A R + P L+ + C KV DI + Q
Sbjct: 388 GLLAALMVSGGLTRVKLHAAFRSMMPPHMLKVVEARGCAFQWIDKPFKVEQERCDIWQQQ 447
Query: 467 SRDL 470
SRD+
Sbjct: 448 SRDV 451
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 136/293 (46%), Gaps = 60/293 (20%)
Query: 13 ELVYSRCLTEVSLEAFRDC--ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
++ +R +T+VSL A +L L + + + + +I + L +D++ SD+
Sbjct: 148 DITCNRNITDVSLAAITSSCHSLISLRIESCSHFSSEGLRLIGKRCCHLEELDITDSDLD 207
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG 129
D GL L CS L SL C++ISD GL H+ + L + R+ I+ +G+ A
Sbjct: 208 DEGLKALSGCSKLSSLKIGICMRISDQGLIHIGKSCPELRDIDLYRSGGISDEGVTQIA- 266
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-S 188
+G LES+N+ +C ITD + LS L +L+I
Sbjct: 267 ----------------------QGCPMLESINLSYCTEITDVSLMSLSKCAKLNTLEIRG 304
Query: 189 CSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
C ++ +G++ + G + L L+++ C +++ +G +F+L+ +
Sbjct: 305 CPSISSAGLSEIAIGCRLLAKLDVKKC-------FAINDVG-MFFLS------------Q 344
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
FS SL+ +NL + +TD GL +L S+ CG+ + +V+L G+T
Sbjct: 345 FSH--SLRQINLSYCSVTD------IGLLSLSSI----CGLQNMTIVHLAGIT 385
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 30/210 (14%)
Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
I+ +CL + L NLE L L C GI D+ L+GL N S
Sbjct: 1 ISKDCLPAIMELPNLEVLALVGCVGIDDDA---LSGLENESS------------------ 39
Query: 323 LSSLKSLNLD-ARQITDTGLAALT-SLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI 379
SL+ L++ R +T TG++++ +L L L+L + +T S + L++L++
Sbjct: 40 -KSLRVLDMSTCRNVTHTGVSSVVKALPNLLELNLSYCCNVTASMGKCFQMLPKLQTLKL 98
Query: 380 CGGGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVS-NSRITSA 436
G G+KHI SL L+LS+ +TD L ++S L L+ L+++ N IT
Sbjct: 99 EGCKFMADGLKHIGISCVSLRELSLSKCSGVTDTDLSFVVSRLKNLLKLDITCNRNITDV 158
Query: 437 GLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
L + +L SL +ESC +++ RL
Sbjct: 159 SLAAITSSCHSLISLRIESCSHFSSEGLRL 188
>gi|384253405|gb|EIE26880.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 641
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 125/474 (26%), Positives = 193/474 (40%), Gaps = 100/474 (21%)
Query: 55 QGSSLLSVDLSGSDVTDSG---------LIHLKDCSNLQSLD-FNFCIQISDGGLEHLRG 104
+G++L +DLSG D+T L L+ + Q L ++ C Q+ D E L
Sbjct: 57 RGTTLRKLDLSGCDLTMPAGTLLDLLWNLTQLEHLAIAQQLPKYDACFQVDDELCEALGR 116
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT-RIHGGLVNLKGLMKLESLNI- 162
+ LT L R+ + IT +G+ AGL L L L C + ++ +L L+I
Sbjct: 117 MRGLTHLDLRQPSPITGRGLDRLAGLERLRTLRLGPCAGLLDSSFQSIACHTQLTELDIC 176
Query: 163 -----KWCNCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ C + + L+ L NL SLQ++ S+ D + L L LT L L
Sbjct: 177 FGEKGRTCTSLPAEVLAQLATLPNLVSLQLAGFDTSRTED--LPSLHCLSTLTHLGLSQV 234
Query: 215 -----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDEC 268
P A + SL L LN+C + D S+ +L+ L++ + +
Sbjct: 235 TNSRSPGGVATFLRCMPIQSLIRLELNQCNIGIDVFPLISQATTLRALSVTQCSPVYGLD 294
Query: 269 LVHLKGLTNLESLNLD---------------------SCGIGDEGLV------------- 294
L H+ GL+ LESL LD SC + L
Sbjct: 295 LHHMSGLSRLESLTLDHSHPLSSNWSFLQHLTRLTQFSCAAHKDALPMSSDHNIAGLLEN 354
Query: 295 ----------------------NLTGLTNLESINLSFTGISDGS-----------LRKLA 321
++ LT L +++S G S L +LA
Sbjct: 355 AIARKDLQRLDLRGHLLGKELGDIAALTALTELDISAAGCDVASHPSIACVFNLGLAQLA 414
Query: 322 GLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
GLS L+ LNL + + GL + S L L HLDL G+ + D+ A+L L+SL I
Sbjct: 415 GLSRLQRLNLACTAVDEEGLRGICSGLRELLHLDLSGSAVEDADLAHLTKLPRLQSLRIN 474
Query: 381 GGG----LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
++DAG+ + +S+L L + N +T L+ +S LTGL L+VS+
Sbjct: 475 NQPALDDISDAGLAEVSRVSALRCLEVKGNQCITAAGLKHLSALTGLSDLDVSD 528
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN---FCIQISDGGL 99
V+++ + I S LL +DLSGS V D+ L HL LQSL N ISD GL
Sbjct: 428 AVDEEGLRGICSGLRELLHLDLSGSAVEDADLAHLTKLPRLQSLRINNQPALDDISDAGL 487
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKL 157
+ +S L L + N ITA G+K + L L LD+ C+ I+ L +L+G L
Sbjct: 488 AEVSRVSALRCLEVKGNQCITAAGLKHLSALTGLSDLDVSDCSAINPKRALNSLQGCTAL 547
Query: 158 ESL 160
L
Sbjct: 548 RML 550
>gi|51850103|dbj|BAD42392.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 621
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 174/391 (44%), Gaps = 31/391 (7%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D+ +A+ S+ S+DLS + + G L D L SL+ + +I D G L
Sbjct: 224 GIGDRAAQALAAS-RSIRSLDLSVNMIGCDGAQALADAP-LVSLNL-YSNEIGDDGARAL 280
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
LTSL RRN I G AFA L KL+L G L G L L++
Sbjct: 281 ATSQTLTSLELRRN-GIGNAGAGAFANNTVLRKLNLANNMIDKRGARVLAGNTSLTELDL 339
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI------AYLKGLQ------------ 204
N + D + L+G +L SL++ ++++D G+ A L+ L
Sbjct: 340 G-GNRLGDKGARALAGNRSLLSLKVDHNEISDEGVQALAQHATLRSLDLSFNFVGLQGAG 398
Query: 205 ------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
+L+ LNL C + + +L+ SL L LN ++ DDG +K +L +L+
Sbjct: 399 ALGGNTRLSELNLSLCGINSYSASALARNKSLASLYLNGNRIGDDGARALAKNSTLTLLD 458
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
L N I + L G L SL L GI D+G L L +++LS I R
Sbjct: 459 LSRNNIQNAGAEALGGNQALISLKLAGNGIDDDGAAALARHPRLTTLDLSQNRIGSEGAR 518
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
LA ++L L+L +I G AL+ T LT L + I + GA L + +L SL+
Sbjct: 519 HLAQSATLAELDLSENRIGPEGAKALSLSTVLTTLKVIDNAIGEDGARALADSTSLTSLD 578
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
G+ +AG + ++ + +T QN N
Sbjct: 579 ARRNGIGEAGAQVLEANTRIT--GTPQNPNF 607
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 184/420 (43%), Gaps = 27/420 (6%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+GS ++ GL HL L+SL+ N I+I G L +L SLS I +
Sbjct: 174 TGSAISAEGLAHLAAMP-LKSLNLN-GIEIGVEGARTLATSKSLVSLSLI-GCGIGDRAA 230
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKWCNCITDSDMKPL 176
+A A ++ LDL VN+ G L SLN+ + N I D + L
Sbjct: 231 QALAASRSIRSLDLS---------VNMIGCDGAQALADAPLVSLNL-YSNEIGDDGARAL 280
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L SL++ + + ++G L LNL + L+ SL L+L
Sbjct: 281 ATSQTLTSLELRRNGIGNAGAGAFANNTVLRKLNLANNMIDKRGARVLAGNTSLTELDLG 340
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+L D G + SL L + NEI+DE + L L SL+L +G +G L
Sbjct: 341 GNRLGDKGARALAGNRSLLSLKVDHNEISDEGVQALAQHATLRSLDLSFNFVGLQGAGAL 400
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
G T L +NLS GI+ S LA SL SL L+ +I D G AL + LT LDL
Sbjct: 401 GGNTRLSELNLSLCGINSYSASALARNKSLASLYLNGNRIGDDGARALAKNSTLTLLDLS 460
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I ++GA L + L SL++ G G+ D G + LT L+LSQN ++ L
Sbjct: 461 RNNIQNAGAEALGGNQALISLKLAGNGIDDDGAAALARHPRLTTLDLSQNRIGSEGARHL 520
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
T L L++S +RI G + L S L + KV N I +R L + S
Sbjct: 521 AQSAT-LAELDLSENRIGPEGAKALS-----LSTVLTTLKVIDNAIGEDGARALADSTSL 574
>gi|218960535|ref|YP_001740310.1| putative Phosphoprotein phosphatase [Candidatus Cloacamonas
acidaminovorans]
gi|167729192|emb|CAO80103.1| putative Phosphoprotein phosphatase [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 3445
Score = 88.6 bits (218), Expect = 7e-15, Method: Composition-based stats.
Identities = 106/326 (32%), Positives = 172/326 (52%), Gaps = 27/326 (8%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L+SL++ N I SD+ PL+GLTNL+ L + ++++D ++ L L L L+L G
Sbjct: 2943 LTNLQSLDLD-SNQI--SDLSPLAGLTNLQELYLYYNQISD--LSPLAELTNLQYLDLGG 2997
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
++ L L+ L +L L L Q+ D + + +L+ L+L N+I+D L L
Sbjct: 2998 NQISD--LSPLAGLNNLQELYLYWNQIGD--LSPLAGLTNLQELDLYSNQISD--LSPLA 3051
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
LTNL L+L I D L L GLTNL+ + L + I+ L LAGL++L+ LNL +
Sbjct: 3052 ELTNLWYLDLSYNQISD--LSPLAGLTNLQDLYLGWNQIN--YLSPLAGLTNLQVLNLYS 3107
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QI+D L+ L LT L +L L+ +I+D + L NL L + ++D + +
Sbjct: 3108 NQISD--LSPLAELTNLQYLHLYYNQISD--LSPLTGLTNLHYLYLAYNQISD--LSPLI 3161
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
L++L L+L N ++D + ++ LT L L + +++I+ L L L NL L L+
Sbjct: 3162 GLTNLQYLHLYYN-QISD--ISPLAELTNLQYLWLDSNQISD--LSPLAGLTNLWWLWLD 3216
Query: 454 SCKVTANDIKRLQSRDLP-NLVSFRP 478
++ + QS LP + S+ P
Sbjct: 3217 GNPISYESMLLAQSWSLPWSTTSYNP 3242
Score = 87.4 bits (215), Expect = 2e-14, Method: Composition-based stats.
Identities = 114/327 (34%), Positives = 163/327 (49%), Gaps = 53/327 (16%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NLQSLD + QISD L L GL+NL L N + AGL NL LDL
Sbjct: 2313 TNLQSLDLD-SNQISD--LSPLAGLTNLLELYLLDN---MINYLSPLAGLTNLQYLDL-- 2364
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAY 199
GG N I SD+ PL+GLTNL+ L + +++ S +A
Sbjct: 2365 -----GG------------------NQI--SDLSPLAGLTNLQDLYLGWNQINYLSPLAG 2399
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L LQ+L L N + + ++ L+ L +L L L Q+SD S + +L+ L L
Sbjct: 2400 LTNLQELDLNNNQ-----ISNINPLAGLTNLQKLYLYYNQISD--LSPLSGLTNLQYLLL 2452
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
+N+I++ + L GLTNL+ L+L S I D L L LTNL ++LS+ ISD L
Sbjct: 2453 EYNQISN--ISPLAGLTNLQVLDLYSNQISD--LSPLAELTNLWYLDLSYNQISD--LSP 2506
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L GL +L+ L LD QI D L+ L LT L +L L+ +I+D + L NL L +
Sbjct: 2507 LVGLVNLQGLWLDNNQIND--LSPLIGLTNLQYLHLYYNQISD--LSPLTGLTNLHYLYL 2562
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQN 406
++D + ++ L++L L L N
Sbjct: 2563 AYNQISD--LSSVEGLTNLQELYLDYN 2587
Score = 82.4 bits (202), Expect = 5e-13, Method: Composition-based stats.
Identities = 97/310 (31%), Positives = 159/310 (51%), Gaps = 35/310 (11%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL+SL + ++++D ++ L GL L L L + L L+ L +L YL+L
Sbjct: 2312 LTNLQSLDLDSNQISD--LSPLAGLTNLLELYLLDNMINY--LSPLAGLTNLQYLDLGGN 2367
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
Q+SD + + +L+ L LG+N+I L L GLTNL+ L+L++ I + + L G
Sbjct: 2368 QISD--LSPLAGLTNLQDLYLGWNQIN--YLSPLAGLTNLQELDLNNNQISN--INPLAG 2421
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
LTNL+ + L + ISD L L+GL++L+ L L+ QI++ ++ L LT L LDL+
Sbjct: 2422 LTNLQKLYLYYNQISD--LSPLSGLTNLQYLLLEYNQISN--ISPLAGLTNLQVLDLYSN 2477
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGV--------------KHIKDLSSLTLLNLS 404
+I+D + L NL L++ ++D I DLS L L
Sbjct: 2478 QISD--LSPLAELTNLWYLDLSYNQISDLSPLVGLVNLQGLWLDNNQINDLSPLIGLTNL 2535
Query: 405 QNCNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
Q +L + +S LTGL +L+ ++ ++I+ L ++ L NL+ L L+ ++
Sbjct: 2536 QYLHLYYNQISDLSPLTGLTNLHYLYLAYNQISD--LSSVEGLTNLQELYLDYNPISYES 2593
Query: 462 IKRLQSRDLP 471
+ QS LP
Sbjct: 2594 MLLAQSWSLP 2603
Score = 79.7 bits (195), Expect = 3e-12, Method: Composition-based stats.
Identities = 90/261 (34%), Positives = 130/261 (49%), Gaps = 39/261 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L +NLQ LD QISD L L GL+NL L N + AGL NL +L
Sbjct: 2353 LAGLTNLQYLDLG-GNQISD--LSPLAGLTNLQDLYLGWNQI---NYLSPLAGLTNLQEL 2406
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
DL +I + L GL L+ L + + N I SD+ PLSGLTNL+ L + +++ S
Sbjct: 2407 DLNN-NQI-SNINPLAGLTNLQKLYLYY-NQI--SDLSPLSGLTNLQYLLLEYNQI--SN 2459
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-------------- 242
I+ L GL L +L+L ++ L L+ L +L+YL+L+ Q+SD
Sbjct: 2460 ISPLAGLTNLQVLDLYSNQISD--LSPLAELTNLWYLDLSYNQISDLSPLVGLVNLQGLW 2517
Query: 243 ------DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ + +L+ L+L +N+I+D L L GLTNL L L I D L ++
Sbjct: 2518 LDNNQINDLSPLIGLTNLQYLHLYYNQISD--LSPLTGLTNLHYLYLAYNQISD--LSSV 2573
Query: 297 TGLTNLESINLSFTGISDGSL 317
GLTNL+ + L + IS S+
Sbjct: 2574 EGLTNLQELYLDYNPISYESM 2594
Score = 76.3 bits (186), Expect = 3e-11, Method: Composition-based stats.
Identities = 77/215 (35%), Positives = 118/215 (54%), Gaps = 14/215 (6%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+++++G L +L + + SD+ PL+GL NL+ L + ++++D I+ L GL L
Sbjct: 1089 IISIEGAQYLTNLQVMYLYSNQISDLSPLAGLANLQELLLYANQISD--ISPLAGLNNLQ 1146
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L L+ ++ L L+ L +L L L Q+SD + + +L+VL+L N+I+
Sbjct: 1147 YLLLQYNQISD--LSPLAGLTNLQNLILAYNQISD--ISPLAGLTNLQVLDLYSNQIS-- 1200
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L L GLTNL+ L L S I D L L G+TNL INL ISD L LAGL++L+
Sbjct: 1201 YLSPLAGLTNLQELYLHSNQISD--LSPLAGMTNLRVINLKNNQISD--LSPLAGLTNLQ 1256
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
L L +I D ++ L LT L L+L +I+D
Sbjct: 1257 YLLLGWNKIND--ISPLAGLTNLWSLNLSYNQISD 1289
Score = 70.5 bits (171), Expect = 2e-09, Method: Composition-based stats.
Identities = 84/258 (32%), Positives = 130/258 (50%), Gaps = 39/258 (15%)
Query: 57 SSLLSVDLSGSDVTD----SGLIHLKDC----------------SNLQSLDFNFCIQISD 96
++L +DL G+ ++D +GL +L+D +NLQ LD N QIS+
Sbjct: 2357 TNLQYLDLGGNQISDLSPLAGLTNLQDLYLGWNQINYLSPLAGLTNLQELDLNNN-QISN 2415
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
+ L GL+NL L N + +GL NL L LE +I + L GL
Sbjct: 2416 --INPLAGLTNLQKLYLYYNQI---SDLSPLSGLTNLQYLLLEY-NQI-SNISPLAGLTN 2468
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+ L++ + N I SD+ PL+ LTNL L +S ++++D ++ L GL L L L+ +
Sbjct: 2469 LQVLDL-YSNQI--SDLSPLAELTNLWYLDLSYNQISD--LSPLVGLVNLQGLWLDNNQI 2523
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
L L L +L YL+L Q+SD + + +L L L +N+I+D L ++GLT
Sbjct: 2524 ND--LSPLIGLTNLQYLHLYYNQISD--LSPLTGLTNLHYLYLAYNQISD--LSSVEGLT 2577
Query: 277 NLESLNLDSCGIGDEGLV 294
NL+ L LD I E ++
Sbjct: 2578 NLQELYLDYNPISYESML 2595
Score = 69.7 bits (169), Expect = 3e-09, Method: Composition-based stats.
Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 14/215 (6%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+++++G +L+ + + S++ PL+GLTNLK L + ++++D I L GL ++
Sbjct: 1694 IISIEGAQYFTNLDSLYLSYNQISNLNPLAGLTNLKGLNLGSNQISD--INPLAGLTNIS 1751
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L L G ++ + L L +L L L+ Q+SD + + + + LG N+I D
Sbjct: 1752 WLFLFGNYISN--IAPLEGLYNLRNLQLHYNQISD--ITPLAALIDIGGIALGSNQIVD- 1806
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
+ L GLT+L L L I + + L+GL NL+ + L I D + LAGLS L+
Sbjct: 1807 -ITPLAGLTHLIGLELYHNQINN--IDALSGLINLQWLYLDGNQIID--ISPLAGLSILR 1861
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
L L+ QI D ++ L+ L L +L L+ +I+D
Sbjct: 1862 ELYLENNQIND--ISTLSELNNLQYLFLYNNQISD 1894
Score = 65.9 bits (159), Expect = 4e-08, Method: Composition-based stats.
Identities = 78/247 (31%), Positives = 124/247 (50%), Gaps = 36/247 (14%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--------------------EG 292
+L+V+ L N+I+D L L GL NL+ L L + I D
Sbjct: 1100 NLQVMYLYSNQISD--LSPLAGLANLQELLLYANQISDISPLAGLNNLQYLLLQYNQISD 1157
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
L L GLTNL+++ L++ ISD + LAGL++L+ L+L + QI+ L+ L LT L
Sbjct: 1158 LSPLAGLTNLQNLILAYNQISD--ISPLAGLTNLQVLDLYSNQIS--YLSPLAGLTNLQE 1213
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L L +I+D + L NLR + + ++D + + L++L L L N + D
Sbjct: 1214 LYLHSNQISD--LSPLAGMTNLRVINLKNNQISD--LSPLAGLTNLQYLLLGWN-KIND- 1267
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP- 471
+ ++GLT L SLN+S ++I+ L L L NL L L++ ++ + QS LP
Sbjct: 1268 -ISPLAGLTNLWSLNLSYNQISD--LSPLAGLTNLWYLYLDNNPISYESMLLSQSWALPW 1324
Query: 472 NLVSFRP 478
+ S+ P
Sbjct: 1325 STSSYNP 1331
Score = 45.8 bits (107), Expect = 0.046, Method: Composition-based stats.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 23/170 (13%)
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ +L GL NL G + S+ L++L+SL+LD+ QI+D L+ L LT L
Sbjct: 2917 IADLQGLAG----NLHADGRNIISIEGAQYLTNLQSLDLDSNQISD--LSPLAGLTNLQE 2970
Query: 353 LDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL-- 409
L L+ +I+D S A L N + L D G I DLS L LN Q L
Sbjct: 2971 LYLYYNQISDLSPLAELTNLQYL-----------DLGGNQISDLSPLAGLNNLQELYLYW 3019
Query: 410 -TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L ++GLT L L++ +++I+ L L L NL L L +++
Sbjct: 3020 NQIGDLSPLAGLTNLQELDLYSNQISD--LSPLAELTNLWYLDLSYNQIS 3067
Score = 45.1 bits (105), Expect = 0.076, Method: Composition-based stats.
Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 57/255 (22%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQDL LG + +N ++ +A ++L +DL+ + + S + L +NLQ L + +
Sbjct: 2381 LQDLYLG-WNQIN--YLSPLAGL-TNLQELDLNNNQI--SNINPLAGLTNLQKL-YLYYN 2433
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-----------ERC 141
QISD L L GL+NL L N + AGL NL LDL
Sbjct: 2434 QISD--LSPLSGLTNLQYLLLEYNQI---SNISPLAGLTNLQVLDLYSNQISDLSPLAEL 2488
Query: 142 TRI------HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
T + + + +L L+ L +L W + +D+ PL GLTNL+ L + ++++D
Sbjct: 2489 TNLWYLDLSYNQISDLSPLVGLVNLQGLWLDNNQINDLSPLIGLTNLQYLHLYYNQISD- 2547
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
L L+ L +L YL L Q+SD + +L+
Sbjct: 2548 -------------------------LSPLTGLTNLHYLYLAYNQISD--LSSVEGLTNLQ 2580
Query: 256 VLNLGFNEITDECLV 270
L L +N I+ E ++
Sbjct: 2581 ELYLDYNPISYESML 2595
Score = 40.8 bits (94), Expect = 1.4, Method: Composition-based stats.
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 39/189 (20%)
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG------------ 340
+ +L GL NL G + S+ L++L+SL+LD+ QI+D
Sbjct: 2286 IADLQGLAG----NLHADGRNIISIEGAQYLTNLQSLDLDSNQISDLSPLAGLTNLLELY 2341
Query: 341 --------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
L+ L LT L +LDL G +I+D + L NL+ L + G I
Sbjct: 2342 LLDNMINYLSPLAGLTNLQYLDLGGNQISD--LSPLAGLTNLQDLYL--------GWNQI 2391
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELI---SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
LS L L Q +L + + I +GLT L L + ++I+ L L L NL+
Sbjct: 2392 NYLSPLAGLTNLQELDLNNNQISNINPLAGLTNLQKLYLYYNQISD--LSPLSGLTNLQY 2449
Query: 450 LTLESCKVT 458
L LE +++
Sbjct: 2450 LLLEYNQIS 2458
Score = 40.4 bits (93), Expect = 2.3, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 13/126 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DL + + S L L +NLQ L + QISD L L G++NL ++ + N
Sbjct: 1187 TNLQVLDLYSNQI--SYLSPLAGLTNLQEL-YLHSNQISD--LSPLAGMTNLRVINLK-N 1240
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I+ + AGL NL L L +I+ + L GL L SLN+ + N I SD+ PL
Sbjct: 1241 NQIS--DLSPLAGLTNLQYL-LLGWNKIND-ISPLAGLTNLWSLNLSY-NQI--SDLSPL 1293
Query: 177 SGLTNL 182
+GLTNL
Sbjct: 1294 AGLTNL 1299
Score = 38.5 bits (88), Expect = 8.3, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 21/168 (12%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S + L+ NL++L ++ QISD + L L ++ ++ N + + AGL
Sbjct: 1761 SNIAPLEGLYNLRNLQLHYN-QISD--ITPLAALIDIGGIALGSNQIVD---ITPLAGLT 1814
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISC 189
+L+ L+L H + N+ L L +N++W + D+ PL+GL+ L+ L +
Sbjct: 1815 HLIGLEL-----YHNQINNIDALSGL--INLQWLYLDGNQIIDISPLAGLSILRELYLEN 1867
Query: 190 SKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+++ D S ++ L LQ L L N + + L L+ L +L++L L+
Sbjct: 1868 NQINDISTLSELNNLQYLFLYNNQ-----ISDLSPLAGLTNLWWLLLD 1910
>gi|343415517|emb|CCD20643.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 1289
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 117/410 (28%), Positives = 181/410 (44%), Gaps = 17/410 (4%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L L S D L ++ C LQ+L + C I+D + L L +L SL R
Sbjct: 550 LKQFHLRDSSAGDDALEYITACQQLQALVLHRCSSITD--ISPLSDLQSLVSLDIRECMN 607
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G F L L L L + L +L +L+ L + CN ITD+ + L
Sbjct: 608 IV-EGWNCFMRLRMLKMLHLLEARVSNDSLRSLAACTQLQVLVLHRCNNITDTSL--LGS 664
Query: 179 LTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L L+ L + CS ++ G AYL L L + L G + + + L+ + L L
Sbjct: 665 LQYLQVLDVRECSGIS-QGCAYLNNLPYLRAMQLRGLVMNGSFVHRLANQRHIRVLMLQP 723
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
C D + L+VL+L + L GL L+ L + G++ L L
Sbjct: 724 CVFISD-ISPLWHLRELEVLSLCHCGRIERGWDALGGLEKLKDLYILKGPFGNDFLRALQ 782
Query: 298 GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
T+L S+ L S GISD + L +S L+ L++D G L L GL L L
Sbjct: 783 RNTHLRSLALYSCPGISD--ISSLGDVSGLEMLDIDNCAAIRDGWYGLGKLKGLEELYLR 840
Query: 357 GARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
R+ S A+ LR+ +NLR LEI C ++ + + I L L + CN + L
Sbjct: 841 QVRLPRSLASVLRSCENLRVLEIFACNPVVSVSALGTINGLEVLVI----DKCNASATEL 896
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+ L LV+L++S + ++ + L L+ +L+S+ + CKV + R
Sbjct: 897 NSLLQLKCLVALHLSEAILSCSFLHGLRSCVHLQSVRFDRCKVEKGAVFR 946
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 127/495 (25%), Positives = 191/495 (38%), Gaps = 84/495 (16%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD---------------GGLEHLR 103
L +VD S + V D+ L L S L L C I+D GG ++
Sbjct: 336 LRAVDFSHTAVNDACLRELGMASGLSELRLEGCPCITDLSSLSGSPVLKTLVLGGDKNSV 395
Query: 104 G--------LSNLTSLSFR----------------------RNNAITAQGMKAFAGLINL 133
G S+L S+ R R + + + L
Sbjct: 396 GGVCGVTQMYSSLESIDVRYSRDAERFTRRISDRYGERSSYRCGCKNIRNITPLGSIGRL 455
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKV 192
LDL CT I G L L L L + I + ++ L L+ L + C+ +
Sbjct: 456 EVLDLCGCTNIAHGWQRLPQLNYLRELRVGGAG-INNKFIQMLGAHGRLRVLVLEYCNNI 514
Query: 193 TD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
TD S + Y++GL+ L + +CL L L +L DD E +
Sbjct: 515 TDISPLGYIRGLEVLGICECTSVKGGWSCLARLCMLKQ---FHLRDSSAGDDALEYITAC 571
Query: 252 GSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
L+ L L + ITD + L L +L SL++ C EG L L+ ++L
Sbjct: 572 QQLQALVLHRCSSITD--ISPLSDLQSLVSLDIRECMNIVEGWNCFMRLRMLKMLHLLEA 629
Query: 311 GISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
+S+ SLR LA + L+ L L ITDT L L SL L LD+ G AYL
Sbjct: 630 RVSNDSLRSLAACTQLQVLVLHRCNNITDTSL--LGSLQYLQVLDVRECSGISQGCAYLN 687
Query: 370 NFKNLRSLEICG----GGLTD--AGVKHIK-----------DLSSLTLLNLSQ-----NC 407
N LR++++ G G A +HI+ D+S L L + +C
Sbjct: 688 NLPYLRAMQLRGLVMNGSFVHRLANQRHIRVLMLQPCVFISDISPLWHLRELEVLSLCHC 747
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-----DI 462
++ + + GL L L + + LR L+ +LRSL L SC ++ D+
Sbjct: 748 GRIERGWDALGGLEKLKDLYILKGPFGNDFLRALQRNTHLRSLALYSCPGISDISSLGDV 807
Query: 463 KRLQSRDLPNLVSFR 477
L+ D+ N + R
Sbjct: 808 SGLEMLDIDNCAAIR 822
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 100/383 (26%), Positives = 155/383 (40%), Gaps = 41/383 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDG--GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L D S L+ LD + C I DG GL L+GL L R ++ + NL
Sbjct: 804 LGDVSGLEMLDIDNCAAIRDGWYGLGKLKGLEELYLRQVRLPRSLAS----VLRSCENLR 859
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L++ C + + L + LE L I CN + +++ L L L +L +S + ++
Sbjct: 860 VLEIFACNPV-VSVSALGTINGLEVLVIDKCN-ASATELNSLLQLKCLVALHLSEAILSC 917
Query: 195 SGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
S + L+ L + + C V A S L L + +L + ++ + FS++
Sbjct: 918 SFLHGLRSCVHLQSVRFDRCKVEKGAVFRSHHGLSVLDFTSLGKKRV--NALSFFSQVKP 975
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
+ L + L LK T+L +L L C FT +S
Sbjct: 976 SE-FRLQIKSLNKAFLCTLKLNTHLRTLMLYQC---------------------YFTNVS 1013
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
L + +L+ L+LD +GL L L GL L L + DS L K+
Sbjct: 1014 -----PLGDIKTLEVLDLDGCSRIRSGLTDLHKLVGLKTLRLASRGVCDSFLDGLAKLKH 1068
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
LRSL + G +TD V + + L L+LS C +K + I + L L + RI
Sbjct: 1069 LRSLSLIGCRITD--VSELGRIHWLEALDLSY-CTKINKGWKCIGEIKSLKELTLRGCRI 1125
Query: 434 TSAGLRHLKPLKNLRSLTLESCK 456
L LR L+L+ CK
Sbjct: 1126 YYPLFYALNGSDTLRKLSLKYCK 1148
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 99/412 (24%), Positives = 173/412 (41%), Gaps = 43/412 (10%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDG-----GLEHLRGLSNLTS-------LSFRRNNAI 119
S L HL++ L+ L C +I G GLE L+ L L + +RN +
Sbjct: 731 SPLWHLRE---LEVLSLCHCGRIERGWDALGGLEKLKDLYILKGPFGNDFLRALQRNTHL 787
Query: 120 TAQGMKAFAGLIN---------LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+ + + G+ + L LD++ C I G L L LE L ++ +
Sbjct: 788 RSLALYSCPGISDISSLGDVSGLEMLDIDNCAAIRDGWYGLGKLKGLEELYLRQVR-LPR 846
Query: 171 SDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
S L NL+ L+I +C+ V ++ L + L +L ++ C +A L+SL L
Sbjct: 847 SLASVLRSCENLRVLEIFACNPVVS--VSALGTINGLEVLVIDKCNASATELNSLLQLKC 904
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L+L+ LS C + S + + ++ F+ E + L L+ S G
Sbjct: 905 LVALHLSEAILS---CSFLHGLRSCVHLQSVRFDRCKVEKGAVFRSHHGLSVLDFTSLGK 961
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
++ L ++ L L + L++L L Q T ++ L +
Sbjct: 962 KRVNALSFFSQVKPSEFRLQIKSLNKAFLCTLKLNTHLRTLML--YQCYFTNVSPLGDIK 1019
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA---GVKHIKDLSSLTLLNLSQ 405
L LDL G SG L L++L + G+ D+ G+ +K L SL+L+
Sbjct: 1020 TLEVLDLDGCSRIRSGLTDLHKLVGLKTLRLASRGVCDSFLDGLAKLKHLRSLSLIG--- 1076
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
C +TD + + + L +L++S + G + + +K+L+ LTL C++
Sbjct: 1077 -CRITD--VSELGRIHWLEALDLSYCTKINKGWKCIGEIKSLKELTLRGCRI 1125
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 111/438 (25%), Positives = 179/438 (40%), Gaps = 59/438 (13%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDG-----GLEHLRGL---------SNLTSLSF 113
++TD+ L L LQ LD C IS G L +LR + S + L+
Sbjct: 655 NITDTSL--LGSLQYLQVLDVRECSGISQGCAYLNNLPYLRAMQLRGLVMNGSFVHRLAN 712
Query: 114 RRN-------NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
+R+ + + L L L L C RI G L GL KL+ L I
Sbjct: 713 QRHIRVLMLQPCVFISDISPLWHLRELEVLSLCHCGRIERGWDALGGLEKLKDLYILK-G 771
Query: 167 CITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ ++ L T+L+SL + SC ++D I+ L + L +L+++ C L
Sbjct: 772 PFGNDFLRALQRNTHLRSLALYSCPGISD--ISSLGDVSGLEMLDIDNCAAIRDGWYGLG 829
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLD 284
L L L L + +L +L+VL + N + + L + LE L +D
Sbjct: 830 KLKGLEELYLRQVRLPRSLASVLRSCENLRVLEIFACNPVVS--VSALGTINGLEVLVID 887
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
C L +L L L +++LS +S L L L+S+ D ++ A
Sbjct: 888 KCNASATELNSLLQLKCLVALHLSEAILSCSFLHGLRSCVHLQSVRFDRCKVEKG--AVF 945
Query: 345 TSLTGLTHLDL---------------------FGARITDSGAAYLRNFK---NLRSLEIC 380
S GL+ LD F +I A+L K +LR+L +
Sbjct: 946 RSHHGLSVLDFTSLGKKRVNALSFFSQVKPSEFRLQIKSLNKAFLCTLKLNTHLRTLMLY 1005
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
T+ V + D+ +L +L+L C+ L + L GL +L +++ + + L
Sbjct: 1006 QCYFTN--VSPLGDIKTLEVLDLD-GCSRIRSGLTDLHKLVGLKTLRLASRGVCDSFLDG 1062
Query: 441 LKPLKNLRSLTLESCKVT 458
L LK+LRSL+L C++T
Sbjct: 1063 LAKLKHLRSLSLIGCRIT 1080
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 129/285 (45%), Gaps = 41/285 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFRRN 116
L+++ LS + ++ S L L+ C +LQS+ F+ C GLS + TSL +R
Sbjct: 905 LVALHLSEAILSCSFLHGLRSCVHLQSVRFDRCKVEKGAVFRSHHGLSVLDFTSLGKKRV 964
Query: 117 NAITAQGM--------------KAFAGLI----NLVKLDLERCTRIHGGLVNLKGLMKLE 158
NA++ KAF + +L L L +C + L + LE
Sbjct: 965 NALSFFSQVKPSEFRLQIKSLNKAFLCTLKLNTHLRTLMLYQC--YFTNVSPLGDIKTLE 1022
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS---GIAYLKGLQKLTLLNLEGCP 215
L++ C+ I S + L L LK+L+++ V DS G+A LK L+ L+L+ GC
Sbjct: 1023 VLDLDGCSRIR-SGLTDLHKLVGLKTLRLASRGVCDSFLDGLAKLKHLRSLSLI---GCR 1078
Query: 216 VTAACLDSLSALGSLFY---LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+T +S LG + + L+L+ C + G + +I SLK L L I L
Sbjct: 1079 IT-----DVSELGRIHWLEALDLSYCTKINKGWKCIGEIKSLKELTLRGCRIYYPLFYAL 1133
Query: 273 KGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDG 315
G L L+L C G+ D + L + LE +++ + GI G
Sbjct: 1134 NGSDTLRKLSLKYCKGLTD--VYPLGAIHMLEDLDIRYCNGIEKG 1176
>gi|291230586|ref|XP_002735244.1| PREDICTED: partner of paired-like [Saccoglossus kowalevskii]
Length = 396
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 155/306 (50%), Gaps = 46/306 (15%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
NLQSL+ + C ++D GL H +R + +LT L+ IT + A + NL LDL
Sbjct: 93 NLQSLNLSGCYNLTDVGLAHAFVREMPSLTVLNLSLCKQITDSSLGRIAQYLRNLEHLDL 152
Query: 139 ERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS 188
C I G L+ GL KL LN++ C ++DS + L+GLT L+ L +
Sbjct: 153 GGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAHLAGLTKNDAGGTLFLQHLVLQ 212
Query: 189 -CSKVTDSGIA-YLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
C K+TD + +GL KL LNL C +T + + LS + SL LNL C +SD G
Sbjct: 213 DCQKLTDLALLNAARGLVKLESLNLSFCGGITDSGMVHLSRMPSLKELNLRSCDNISDIG 272
Query: 245 CEKFSKIGS-LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
++ G+ L+ L++ F +++ D L H+ +G+ +L S++L SC I D+G+ L
Sbjct: 273 IAHLAEGGAYLRTLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPITDDGMARL----- 327
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGLTHLDLFG-A 358
+ L LK+LN+ +ITD GL + T+L L+ +DL+G
Sbjct: 328 ------------------VRTLRDLKTLNIGQCSRITDEGLGLIATNLRKLSCIDLYGCT 369
Query: 359 RITDSG 364
+IT G
Sbjct: 370 KITTVG 375
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 29/278 (10%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G ++T++GL+ + + L+ L+ C +SD G+ H
Sbjct: 132 ITDSSLGRIAQYLRNLEHLDLGGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAH 191
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L GL+ +N+A G + L L L+ C ++ L+N +GL+KLES
Sbjct: 192 LAGLT--------KNDA---------GGTLFLQHLVLQDCQKLTDLALLNAARGLVKLES 234
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGC-PV 216
LN+ +C ITDS M LS + +LK L + SC ++D GIA+L +G L L++ C V
Sbjct: 235 LNLSFCGGITDSGMVHLSRMPSLKELNLRSCDNISDIGIAHLAEGGAYLRTLDVSFCDKV 294
Query: 217 TAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECL-VHL 272
A L ++ + SL ++L+ C ++DDG + + + LK LN+G + ITDE L +
Sbjct: 295 GDASLTHIAQGMYSLMSISLSSCPITDDGMARLVRTLRDLKTLNIGQCSRITDEGLGLIA 354
Query: 273 KGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF 309
L L ++L C I GL + L L +NL
Sbjct: 355 TNLRKLSCIDLYGCTKITTVGLEKIMQLPCLSVLNLGL 392
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 108/348 (31%), Positives = 178/348 (51%), Gaps = 38/348 (10%)
Query: 134 VKLDLERC-TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 191
KL L R + LVN +G+ +++ L++K S + G+ NL+SL +S C
Sbjct: 52 AKLHLRRANPSLFPSLVN-RGIRRVQILSLK------RSLSSVVQGMHNLQSLNLSGCYN 104
Query: 192 VTDSGIA--YLKGLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRC-QLSDDGCE 246
+TD G+A +++ + LT+LNL C +T + L ++ L +L +L+L C +++ G
Sbjct: 105 LTDVGLAHAFVREMPSLTVLNLSLCKQITDSSLGRIAQYLRNLEHLDLGGCCNITNTGLL 164
Query: 247 KFSK-IGSLKVLNL-GFNEITDECLVHLKGLTN--------LESLNLDSC-GIGDEGLVN 295
+ + L+ LNL ++D + HL GLT L+ L L C + D L+N
Sbjct: 165 LIAWGLTKLRYLNLRSCRHVSDSGIAHLAGLTKNDAGGTLFLQHLVLQDCQKLTDLALLN 224
Query: 296 LT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG-LT 351
GL LES+NLSF G I+D + L+ + SLK LNL + I+D G+A L L
Sbjct: 225 AARGLVKLESLNLSFCGGITDSGMVHLSRMPSLKELNLRSCDNISDIGIAHLAEGGAYLR 284
Query: 352 HLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKH-IKDLSSLTLLNLSQNCN 408
LD+ F ++ D+ ++ + +L S+ + +TD G+ ++ L L LN+ Q
Sbjct: 285 TLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPITDDGMARLVRTLRDLKTLNIGQCSR 344
Query: 409 LTDKTLELISGLTGLVSLNVSN----SRITSAGLRHLKPLKNLRSLTL 452
+TD+ L LI+ T L L+ + ++IT+ GL + L L L L
Sbjct: 345 ITDEGLGLIA--TNLRKLSCIDLYGCTKITTVGLEKIMQLPCLSVLNL 390
>gi|307215039|gb|EFN89866.1| F-box/LRR-repeat protein 14 [Harpegnathos saltator]
Length = 457
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 175/352 (49%), Gaps = 42/352 (11%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG--- 178
Q FA L+ ++ + HG L+G+ LE+LN+ C ITD+ + +SG
Sbjct: 121 QAPALFASLVRRGVKKVQVLSLRHGLSAVLRGVPNLEALNLSGCYNITDTGI--MSGFCQ 178
Query: 179 -LTNLKSLQIS-CSKVTDSGIA----YLKGLQKLTLLNLEGCPVTAACLDSLS-ALGSLF 231
L L L +S C +VTD+ + YLK L+ L L C +T L ++ L L
Sbjct: 179 ELPTLTVLNLSLCKQVTDTSLGRIAQYLKNLEHLELGGC--CNITNTGLMVIAWGLKKLK 236
Query: 232 YLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IG 289
L+L C +SD G + G N D G LE L+L C +
Sbjct: 237 RLDLRSCWHVSDQGIAYLA----------GLNREAD-------GNLALEHLSLQDCQRLS 279
Query: 290 DEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS 346
DE L N++ GLT L+SINLSF I+D ++ LA +SSL+ LNL + I+D G+A L
Sbjct: 280 DEALRNVSLGLTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAE 339
Query: 347 L-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLN 402
+ +T LD+ F +I D ++ + NL+SL + ++D G+ K K L L LN
Sbjct: 340 GGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLN 399
Query: 403 LSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 452
+ Q LTD++L ++ + L +++ ++IT++GL + L L +L L
Sbjct: 400 IGQCSRLTDRSLHTMAENMKHLKCIDLYGCTKITTSGLERIMKLPQLSTLNL 451
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 139/264 (52%), Gaps = 19/264 (7%)
Query: 68 DVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMK 125
VTD+ L + NL+ L+ C I++ GL + GL L L R ++ QG+
Sbjct: 193 QVTDTSLGRIAQYLKNLEHLELGGCCNITNTGLMVIAWGLKKLKRLDLRSCWHVSDQGIA 252
Query: 126 AFAGL-------INLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPL 176
AGL + L L L+ C R+ L N+ GL L+S+N+ +C CITDS +K L
Sbjct: 253 YLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKSINLSFCVCITDSGVKHL 312
Query: 177 SGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFY 232
+ +++L+ L + SC ++D G+AYL +G ++T L++ C A + L +L
Sbjct: 313 ARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKS 372
Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHL-KGLTNLESLNLDSC-GI 288
L+L+ CQ+SD+G K +K + L+ LN+G + +TD L + + + +L+ ++L C I
Sbjct: 373 LSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRSLHTMAENMKHLKCIDLYGCTKI 432
Query: 289 GDEGLVNLTGLTNLESINLSFTGI 312
GL + L L ++NL +
Sbjct: 433 TTSGLERIMKLPQLSTLNLGLWHV 456
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 160/302 (52%), Gaps = 23/302 (7%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLE--HLRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NL 133
L+ NL++L+ + C I+D G+ + L LT L+ +T + A + NL
Sbjct: 150 LRGVPNLEALNLSGCYNITDTGIMSGFCQELPTLTVLNLSLCKQVTDTSLGRIAQYLKNL 209
Query: 134 VKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-----NLKSLQ 186
L+L C I G +V GL KL+ L+++ C ++D + L+GL NL
Sbjct: 210 EHLELGGCCNITNTGLMVIAWGLKKLKRLDLRSCWHVSDQGIAYLAGLNREADGNLALEH 269
Query: 187 IS---CSKVTDSGIAYLK-GLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
+S C +++D + + GL L +NL C +T + + L+ + SL LNL C +
Sbjct: 270 LSLQDCQRLSDEALRNVSLGLTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSCDNI 329
Query: 241 SDDGCEKFSKIGS-LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT 297
SD G ++ GS + L++ F ++I D+ LVH+ +GL NL+SL+L +C I DEG+ +
Sbjct: 330 SDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKIA 389
Query: 298 G-LTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLTHL 353
L +LE++N+ + ++D SL +A + LK ++L +IT +GL + L L+ L
Sbjct: 390 KTLHDLETLNIGQCSRLTDRSLHTMAENMKHLKCIDLYGCTKITTSGLERIMKLPQLSTL 449
Query: 354 DL 355
+L
Sbjct: 450 NL 451
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 136/307 (44%), Gaps = 85/307 (27%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF 231
L G+ NL++L +S C +TD+GI + + L LT+LNL C VT L ++ +
Sbjct: 150 LRGVPNLEALNLSGCYNITDTGIMSGFCQELPTLTVLNLSLCKQVTDTSLGRIAQ----Y 205
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGD 290
NL +L G + N G +V GL L+ L+L SC + D
Sbjct: 206 LKNLEHLELG----------GCCNITNTGL-------MVIAWGLKKLKRLDLRSCWHVSD 248
Query: 291 EGLVNLTGLTNLESINLSFTGIS--------DGSLRKLA-GLSSLKSLNLDARQITDTGL 341
+G+ L GL NL+ +S D +LR ++ GL++LKS+NL
Sbjct: 249 QGIAYLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKSINL---------- 298
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
S +C +TD+GVKH+ +SSL L
Sbjct: 299 ----------------------------------SFCVC---ITDSGVKHLARMSSLREL 321
Query: 402 NLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
NL N++D + L G + + SL+VS +I L H+ + L NL+SL+L +C+++
Sbjct: 322 NLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQIS 381
Query: 459 ANDIKRL 465
I ++
Sbjct: 382 DEGICKI 388
>gi|384252696|gb|EIE26172.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 663
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 150/311 (48%), Gaps = 56/311 (18%)
Query: 168 ITDSDMKPLSGLTNLKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGC-PVTA-ACL 221
IT+ D L GL+ L+ LQ + + S ++ L+GL++L + N+ G P A L
Sbjct: 186 ITERDAVLLGGLSRLQHLQFNAVAFDGRTLISKLSSLQGLRQLEMANVVGAYPAEGDAFL 245
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL--- 278
SL+ L SL N D K + CL L+ L L
Sbjct: 246 KSLTKLSSLRMRN-------DSATAKLPPM---------------HCLSELRSLQELSLT 283
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQIT 337
E L+L GL NL+ LT+L + L G+++G LR L+ L+SL++ DA ++T
Sbjct: 284 EHLHLLL-----PGLTNLSALTDLRQLRLVKVGVTNGVLRCAGALTKLQSLHIPDAFRVT 338
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
DTGL L+SLTGLTHLD ++ R+ +T+AGV + L++
Sbjct: 339 DTGLHHLSSLTGLTHLDF-------CSPSHRRD-----------EDITNAGVAALSALTN 380
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI-TSAGLRHLKPLKNLRSLTLESCK 456
L LNL+ + +T + L ++ T L L++S + + G+ L L NLRSL L+ +
Sbjct: 381 LRSLNLAGHSEVTAEGLAFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQ 440
Query: 457 VTANDIKRLQS 467
++ +++L S
Sbjct: 441 LSNEHVQQLGS 451
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 140/295 (47%), Gaps = 27/295 (9%)
Query: 102 LRGLSNLTSLSFRRNNAITAQ--GMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMKLE 158
L+ L+ L+SL R N++ TA+ M + L +L +L L E + GL NL L L
Sbjct: 245 LKSLTKLSSLRMR-NDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTNLSALTDLR 303
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L + +T+ ++ LT L+SL I +VTD+G+ +L L LT L+
Sbjct: 304 QLRLVKVG-VTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDF------ 356
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLT 276
C S + +++ G S + +L+ LNL G +E+T E L L T
Sbjct: 357 --CSPS----------HRRDEDITNAGVAALSALTNLRSLNLAGHSEVTAEGLAFLADAT 404
Query: 277 NLESLNLDSCGIGDEGLVN-LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L L+L +G G V+ L LTNL S+ L T +S+ +++L L++L SL L
Sbjct: 405 ALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSNEHVQQLGSLTALTSLGLAWCA 464
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 389
I D AAL LT L LD+ +T++G L R +L + G T G+
Sbjct: 465 IDDEAAAALAPLTKLADLDVRYCPMTNAGLCQLSRAMPDLAIFAVEGCPATSIGI 519
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 38/184 (20%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQ-------ISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VTD+GL HL + L LDF C I++ G+ L L+NL SL+ ++ +TA
Sbjct: 337 VTDTGLHHLSSLTGLTHLDF--CSPSHRRDEDITNAGVAALSALTNLRSLNLAGHSEVTA 394
Query: 122 QGMKAF--------------------------AGLINLVKLDLERCTRIHGGLVNLKGLM 155
+G+ AF A L NL L L+R + + L L
Sbjct: 395 EGL-AFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSNEHVQQLGSLT 453
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGC 214
L SL + WC I D L+ LT L L + +T++G+ L + + L + +EGC
Sbjct: 454 ALTSLGLAWC-AIDDEAAAALAPLTKLADLDVRYCPMTNAGLCQLSRAMPDLAIFAVEGC 512
Query: 215 PVTA 218
P T+
Sbjct: 513 PATS 516
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-----RRNNAITAQGMKAFAGLINLVK 135
+ LQSL +++D GL HL L+ LT L F RR+ IT G+ A + L NL
Sbjct: 324 TKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDFCSPSHRRDEDITNAGVAALSALTNLRS 383
Query: 136 LDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L + + GL L L L++ + L+ LTNL+SL + +++++
Sbjct: 384 LNLAGHSEVTAEGLAFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSN 443
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+ L L LT L L C + +L+ L L L++ C +++ G + S+
Sbjct: 444 EHVQQLGSLTALTSLGLAWCAIDDEAAAALAPLTKLADLDVRYCPMTNAGLCQLSR 499
>gi|363728137|ref|XP_003640464.1| PREDICTED: F-box/LRR-repeat protein 14 [Gallus gallus]
Length = 399
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 114/341 (33%), Positives = 168/341 (49%), Gaps = 53/341 (15%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---------CSKVTDSGIA--- 198
++G+ +ESLN+ C +TD+ GL + +IS C ++TDS +
Sbjct: 85 IQGMADIESLNLSGCYNLTDN------GLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA 138
Query: 199 -YLKGLQKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSL 254
YLKGL+ +L L GC L L L LNL C+ LSD G IG L
Sbjct: 139 QYLKGLE---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVG------IGHL 189
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG- 311
+ E G LE L L C + D L +L GL L +NLSF G
Sbjct: 190 AGMTRSAAE----------GCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGG 239
Query: 312 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAY 367
ISD L L+ +SSL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY
Sbjct: 240 ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAY 298
Query: 368 L-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLV 424
+ + LRSL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L
Sbjct: 299 IAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 358
Query: 425 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+++ +RIT GL + L L+ L L ++T ++ R
Sbjct: 359 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWEMTESEKVR 399
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM ++ L+L C + G + + L S
Sbjct: 67 RGIRRVQILSLRRSLSYVIQGMA------DIESLNLSGCYNLTDNGLGHAFVAEISSLRS 120
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 121 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 178
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ LSD + ++ +G L+ LNL F
Sbjct: 179 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCG 238
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFT-GISDGSLRK 319
I+D L+HL +++L SLNL SC I D G+++L G L +++SF + D SL
Sbjct: 239 GISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 298
Query: 320 LA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLR 375
+A GL L+SL+L + I+D G+ + + GL L++ RITD G + + L
Sbjct: 299 IAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 358
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
+++ G +T G++ I L L +LNL
Sbjct: 359 GIDLYGCTRITKRGLERITQLPCLKVLNL 387
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 169/327 (51%), Gaps = 48/327 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ ++++SL+ + C ++D GL H + +S+L SL+ IT + A + L
Sbjct: 85 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 144
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 145 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 204
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K++D + +L +GL +L LNL C ++ A L LS + SL LNL C
Sbjct: 205 QLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDN 264
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L SL+L SC I DEG+
Sbjct: 265 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINR 323
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 324 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 360
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEI 379
DL+G RIT G + L+ L +
Sbjct: 361 DLYGCTRITKRGLERITQLPCLKVLNL 387
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 51/202 (25%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
++D+GL+HL S+L+SL+ C ISD G+ HL
Sbjct: 240 ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHL------------------------AM 275
Query: 129 GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
G + L LD+ C ++ + +GL L SL++ C+ + + + + L++L
Sbjct: 276 GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLN 335
Query: 187 I-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
I C ++TD G+ + + L +LT ++L GC +++ G
Sbjct: 336 IGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRG 372
Query: 245 CEKFSKIGSLKVLNLGFNEITD 266
E+ +++ LKVLNLG E+T+
Sbjct: 373 LERITQLPCLKVLNLGLWEMTE 394
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 17/160 (10%)
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RN 370
GL LKSLNL + R ++D G+ L +T GL L L +++D +L R
Sbjct: 166 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARG 225
Query: 371 FKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLN 427
LR L + CGG ++DAG+ H+ +SSL LNL N++D + L G L L+
Sbjct: 226 LGRLRQLNLSFCGG-ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 284
Query: 428 VSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
VS ++ L ++ + L LRSL+L SC ++ I R+
Sbjct: 285 VSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRM 324
>gi|320165720|gb|EFW42619.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 664
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 150/345 (43%), Gaps = 7/345 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
QI+ GLS L +L + NN ++A AF GL L +L L + T +
Sbjct: 118 QITTVPANAFSGLSKLNTL-YLYNNWLSAIPSSAFTGLTALTQLLLHNNQITTVPSSA-- 174
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L+ L + + N I + SGLT L L + +++T GL KL L
Sbjct: 175 FTGLTALQLLYL-YNNQIATVAIDAFSGLTALVQLYLYNNQITSISANAFSGLSKLNTLQ 233
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L ++A + + L +L L L Q++ F+ + +L+ L L N+I +
Sbjct: 234 LNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQFLYLYNNQIATVAIN 293
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
GLT L L LD+ I +GL+ L +++L +S GL++L L
Sbjct: 294 AFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLR 353
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
LD QIT A + LT L +L L+ +IT A L L + +T
Sbjct: 354 LDTNQITTVPANAFSGLTALIYLYLYNNQITTVPANAFSGLTALVQLYLYNNQITTIPSS 413
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
+ LS+LT L L N +T SGLT L L + N+ ITS
Sbjct: 414 ALTGLSALTQLYLYNN-QITSVPANGFSGLTALTDLRLFNNTITS 457
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 186/450 (41%), Gaps = 39/450 (8%)
Query: 15 VYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
+Y+ +T +S AF + L L L N+ W+ I S +G
Sbjct: 210 LYNNQITSISANAFSGLSKLNTLQL------NNNWLSAIPSSA-------FTGLTALTQL 256
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
L++ + + S F GL L+ L + NN I + AF+GL L
Sbjct: 257 LLYNNQITTVPSSAFT--------GLTALQFL-------YLYNNQIATVAINAFSGLTAL 301
Query: 134 V--KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISC 189
V +LD + T + GL KL +L++ W + I S +GLT L L++
Sbjct: 302 VQLRLDTNQITTVPANA--FSGLSKLNTLHLYNNWLSAIPSSAF---TGLTALTQLRLDT 356
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++T GL L L L +T ++ S L +L L L Q++ +
Sbjct: 357 NQITTVPANAFSGLTALIYLYLYNNQITTVPANAFSGLTALVQLYLYNNQITTIPSSALT 416
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
+ +L L L N+IT GLT L L L + I TGLT L ++LS
Sbjct: 417 GLSALTQLYLYNNQITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSL 476
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
++ +GL++L L L ++ +A T LT L +L L+ +IT A
Sbjct: 477 NQLTSIPAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFT 536
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
L L++ G +T +SSL L L N +T + +GLT L L +S
Sbjct: 537 GLTALVQLQLYGNQITTISASAFAGMSSLVQLYLYSN-RITAIFVNAFTGLTHLSLLELS 595
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
N++ITS L + L+L + ++A
Sbjct: 596 NNQITSLPANAFSGLTAMTQLSLYNNSLSA 625
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 157/384 (40%), Gaps = 34/384 (8%)
Query: 104 GLSNLTSLSFRRNNAITAQGM------------------------KAFAGLINLVKLDL- 138
G+ T++ + +NN IT+ AF+GL L LDL
Sbjct: 56 GIPVTTTILYLQNNQITSISANAFSSLTLLTYLSLSSNPITNIASSAFSGLSVLNTLDLT 115
Query: 139 -ERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
+ T + GL KL +L + W + I S +GLT L L + +++T
Sbjct: 116 NNQITTVPANA--FSGLSKLNTLYLYNNWLSAIPSSAF---TGLTALTQLLLHNNQITTV 170
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
+ GL L LL L + +D+ S L +L L L Q++ FS + L
Sbjct: 171 PSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQLYLYNNQITSISANAFSGLSKLN 230
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N ++ GLT L L L + I TGLT L+ + L I+
Sbjct: 231 TLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQFLYLYNNQIATV 290
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
++ +GL++L L LD QIT A + L+ L L L+ ++ ++ L
Sbjct: 291 AINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALT 350
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + +T L++L L L N +T SGLT LV L + N++IT+
Sbjct: 351 QLRLDTNQITTVPANAFSGLTALIYLYLYNN-QITTVPANAFSGLTALVQLYLYNNQITT 409
Query: 436 AGLRHLKPLKNLRSLTLESCKVTA 459
L L L L L + ++T+
Sbjct: 410 IPSSALTGLSALTQLYLYNNQITS 433
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 138/325 (42%), Gaps = 7/325 (2%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLES 159
GL+ LT L N IT AF+GL L+ L L + T + GL L
Sbjct: 343 FTGLTALTQLRLDTNQ-ITTVPANAFSGLTALIYLYLYNNQITTVPANA--FSGLTALVQ 399
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L + + N IT L+GL+ L L + +++T GL LT L L +T+
Sbjct: 400 LYL-YNNQITTIPSSALTGLSALTQLYLYNNQITSVPANGFSGLTALTDLRLFNNTITSI 458
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
++ + L L YL+L+ QL+ FS + +L L L N ++ GLT L
Sbjct: 459 LANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALL 518
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + I TGLT L + L I+ S AG+SSL L L + +IT
Sbjct: 519 YLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTISASAFAGMSSLVQLYLYSNRITAI 578
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
+ A T LT L+ L+L +IT A + L + L+ L++L
Sbjct: 579 FVNAFTGLTHLSLLELSNNQITSLPANAFSGLTAMTQLSLYNNSLSAVPSSAFTGLTALQ 638
Query: 400 LLNLSQNCNLTDKTLELISGLTGLV 424
L L N +T +GLT LV
Sbjct: 639 AL-LLYNNQITSVAANAFTGLTALV 662
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 118/280 (42%), Gaps = 4/280 (1%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+T+ + GL L L+L +T ++ S L L L L LS F+
Sbjct: 94 PITNIASSAFSGLSVLNTLDLTNNQITTVPANAFSGLSKLNTLYLYNNWLSAIPSSAFTG 153
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ +L L L N+IT GLT L+ L L + I + +GLT L + L
Sbjct: 154 LTALTQLLLHNNQITTVPSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQLYLYNN 213
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I+ S +GLS L +L L+ ++ +A T LT LT L L+ +IT ++
Sbjct: 214 QITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTG 273
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L+ L + + + L++L L L N +T SGL+ L +L++ N
Sbjct: 274 LTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTN-QITTVPANAFSGLSKLNTLHLYN 332
Query: 431 ---SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
S I S+ L L LR T + V AN L +
Sbjct: 333 NWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTA 372
>gi|343417958|emb|CCD19884.1| leucine-rich repeat region [Trypanosoma vivax Y486]
Length = 389
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 130/380 (34%), Positives = 191/380 (50%), Gaps = 34/380 (8%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S+L+ LD + C I+D + L LS+L L IT + + L +L LDL
Sbjct: 20 SSLRMLDLSHCTGITD--VSPLSVLSSLRMLDLSHCTGIT--DVSPLSELSSLRTLDLSH 75
Query: 141 CTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
CT G+ ++ L KL SL + +C +D+ PLS L++L+ L +S C+ +TD ++
Sbjct: 76 CT----GITDVSPLSKLSSLRTLDLSHCTAITDVSPLSKLSSLRMLDLSHCTGITD--VS 129
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
L L L L+L C + LS L SL L+L+ C D S++ SL+ L+
Sbjct: 130 PLSKLSSLRTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD-VSPLSELSSLRTLD 187
Query: 259 LGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDG 315
L ITD + L L++L L+L C GI D L L L+ + LS TGI+D
Sbjct: 188 LSHCTGITD--VSPLSKLSSLHELDLSHCTGITDVSL--LYRFFGLDKLGLSHCTGITDV 243
Query: 316 SLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKN 373
S L+ LS L++L+L ITD ++ L+ L GL LDL ITD + L +
Sbjct: 244 S--PLSKLSGLRTLDLSHCTGITD--VSPLSKLGGLCELDLSHCTGITD--VSPLSKLSS 297
Query: 374 LRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
LR L++ G+TD V + LSSL L+LS +TD + +S L+GL L++S
Sbjct: 298 LRKLDLSHCTGITD--VSPLSVLSSLRTLDLSHCRGITD--VSPLSTLSGLEVLDLSGCT 353
Query: 433 ITSAGLRHLKPLKNLRSLTL 452
+GL L L LR L+
Sbjct: 354 GVRSGLESLCSLSFLRYLSF 373
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 166/333 (49%), Gaps = 47/333 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L++LD + C I+D + L LS+L +L AIT + + L +L L
Sbjct: 62 LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTAIT--DVSPLSKLSSLRML 117
Query: 137 DLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
DL CT G+ ++ L KL SL + +C +D+ PLS L++L++L +S C+ +TD
Sbjct: 118 DLSHCT----GITDVSPLSKLSSLRTLDLSHCTGITDVSPLSELSSLRTLDLSHCTGITD 173
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD--------GCE 246
++ L L L L+L C + LS L SL L+L+ C D G +
Sbjct: 174 --VSPLSELSSLRTLDLSHCTGITD-VSPLSKLSSLHELDLSHCTGITDVSLLYRFFGLD 230
Query: 247 KF--------------SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGD 290
K SK+ L+ L+L ITD + L L L L+L C GI D
Sbjct: 231 KLGLSHCTGITDVSPLSKLSGLRTLDLSHCTGITD--VSPLSKLGGLCELDLSHCTGITD 288
Query: 291 EGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLT 348
+ L+ L++L ++LS TGI+D S L+ LSSL++L+L R ITD ++ L++L+
Sbjct: 289 --VSPLSKLSSLRKLDLSHCTGITDVS--PLSVLSSLRTLDLSHCRGITD--VSPLSTLS 342
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
GL LDL G SG L + LR L G
Sbjct: 343 GLEVLDLSGCTGVRSGLESLCSLSFLRYLSFLG 375
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 33/226 (14%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L LD +
Sbjct: 159 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLHELDLSH 213
Query: 91 CIQISDG------------GLEHLRGLSNLTSLS-------FRRNNAITAQGMKAFAGLI 131
C I+D GL H G+++++ LS ++ + + L
Sbjct: 214 CTGITDVSLLYRFFGLDKLGLSHCTGITDVSPLSKLSGLRTLDLSHCTGITDVSPLSKLG 273
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-C 189
L +LDL CT G+ ++ L KL SL + +C +D+ PLS L++L++L +S C
Sbjct: 274 GLCELDLSHCT----GITDVSPLSKLSSLRKLDLSHCTGITDVSPLSVLSSLRTLDLSHC 329
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+TD ++ L L L +L+L GC + L+SL +L L YL+
Sbjct: 330 RGITD--VSPLSTLSGLEVLDLSGCTGVRSGLESLCSLSFLRYLSF 373
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 25/224 (11%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGD 290
L+L+ C D S + SL++L+L ITD + L L++L L+L C GI D
Sbjct: 2 LDLSHCTGITD-VSPLSVLSSLRMLDLSHCTGITD--VSPLSVLSSLRMLDLSHCTGITD 58
Query: 291 EGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLT 348
+ L+ L++L +++LS TGI+D S L+ LSSL++L+L ITD ++ L+ L+
Sbjct: 59 --VSPLSELSSLRTLDLSHCTGITDVS--PLSKLSSLRTLDLSHCTAITD--VSPLSKLS 112
Query: 349 GLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQN 406
L LDL ITD + L +LR+L++ G+TD V + +LSSL L+LS
Sbjct: 113 SLRMLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHC 168
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+TD + +S L+ L +L++S+ G+ + PL L SL
Sbjct: 169 TGITD--VSPLSELSSLRTLDLSH----CTGITDVSPLSKLSSL 206
>gi|290977411|ref|XP_002671431.1| leucine rich repeat protein [Naegleria gruberi]
gi|284085000|gb|EFC38687.1| leucine rich repeat protein [Naegleria gruberi]
Length = 389
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 142/306 (46%), Gaps = 31/306 (10%)
Query: 130 LINLVKLDLERC----TRIHGGLVNLKGLMKLESLNIKWC-------------------- 165
L N+ K+ L C I G + LK +L S++I +C
Sbjct: 68 LHNISKIKLRACDDYLESIKGLMEILKSYDQLRSVDIGYCYIGNSQTISEMKQLTSLDID 127
Query: 166 -NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL--EGCPVTAACLD 222
NC+ + +K + L NL L I C+++ G + G++++ LN+ G V A L
Sbjct: 128 NNCVDEQGVKLIGELHNLTRLNIGCNRIGLEGFKSISGMKQMRDLNVSSSGAGVEGAKL- 186
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+S L L N++ ++ ++G + ++ L +L++ N+I E + L L L
Sbjct: 187 -MSQLKHLTKFNISGNEIGEEGAKSIGELKWLTMLDICSNQIGAEGAKSISQLERLTKLY 245
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+ GIG EG +++ L++L ++ + I + ++ L L L +D+ +I G
Sbjct: 246 ISGNGIGPEGAQSISQLSHLTTLFIGGNQIGSKGSKSISQLKRLTILYIDSNEIGSEGAN 305
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
+++ L+ L L + +I D GA + K+L +LEI + D G K I L LT L+
Sbjct: 306 SISQLSNLKELYISDNQIGDEGAKSISQLKHLTTLEILRNEIGDQGAKSISQLKQLTRLH 365
Query: 403 LSQNCN 408
+S CN
Sbjct: 366 IS--CN 369
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 137/326 (42%), Gaps = 29/326 (8%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK L+S+D +C G + + + LTSL NN + QG+K L NL +L
Sbjct: 93 LKSYDQLRSVDIGYCY---IGNSQTISEMKQLTSLDID-NNCVDEQGVKLIGELHNLTRL 148
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ CN I K +SG+ ++ L +S S G
Sbjct: 149 NI-------------------------GCNRIGLEGFKSISGMKQMRDLNVSSSGAGVEG 183
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
+ L+ LT N+ G + S+ L L L++ Q+ +G + S++ L
Sbjct: 184 AKLMSQLKHLTKFNISGNEIGEEGAKSIGELKWLTMLDICSNQIGAEGAKSISQLERLTK 243
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316
L + N I E + L++L +L + IG +G +++ L L + + I
Sbjct: 244 LYISGNGIGPEGAQSISQLSHLTTLFIGGNQIGSKGSKSISQLKRLTILYIDSNEIGSEG 303
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
++ LS+LK L + QI D G +++ L LT L++ I D GA + K L
Sbjct: 304 ANSISQLSNLKELYISDNQIGDEGAKSISQLKHLTTLEILRNEIGDQGAKSISQLKQLTR 363
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLN 402
L I + D G K + + +L+N
Sbjct: 364 LHISCNRIGDQGAKLLNRMKINSLIN 389
>gi|299066813|emb|CBJ38007.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum CMR15]
Length = 457
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 173/376 (46%), Gaps = 15/376 (3%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L+ LD + C I+ G+ HL L L L+ R N I A+G + A L L++
Sbjct: 63 ASLKELDLSQCRGPITAAGMAHLSRLP-LVRLNVR-NKRIGAKGARLLANHPTLTSLNVS 120
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L G M+L +LN+ N + + K L+ L+SL +S +++ D G
Sbjct: 121 NNRIGPEGAQALAGNMRLTTLNVS-GNRLGVEEAKALAANQTLRSLDVSDNRIGDEGARV 179
Query: 200 LKGLQKLTLL--NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L +LT L N G V A +L+A +L L + + D G + L L
Sbjct: 180 LAACTQLTTLDANRNGIGVDGAT--ALAACPTLRSLGIGGNAIGDAGVLALAANARLTTL 237
Query: 258 NL---GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
N+ G + L K LT L LD GIG+ G L T L +++L+ I
Sbjct: 238 NVESTGVGAVGVGALAASKALT---WLRLDGNGIGNAGATALAASTRLTTLHLARNKIGA 294
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+ LA + L +L+L +I DTG+ AL + L L + + D A L + L
Sbjct: 295 EGAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLTVRRNDLKDESAVILAASRTL 354
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
+L++ G G+ D G K + +LT L++S N ++ + ++ LV L++ ++R+
Sbjct: 355 TTLDLSGNGIEDQGAKALAANPTLTTLDVSSN-DIKNAGARALAANARLVWLDLRHNRME 413
Query: 435 SAGLRHLKPLKNLRSL 450
AG R L + L SL
Sbjct: 414 EAGTRALLANRTLSSL 429
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 152/335 (45%), Gaps = 14/335 (4%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 188
L +LDL +C G + G+ L L + N I + L+ L SL +S
Sbjct: 65 LKELDLSQCR----GPITAAGMAHLSRLPLVRLNVRNKRIGAKGARLLANHPTLTSLNVS 120
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++ G L G +LT LN+ G + +L+A +L L+++ ++ D+G
Sbjct: 121 NNRIGPEGAQALAGNMRLTTLNVSGNRLGVEEAKALAANQTLRSLDVSDNRIGDEGARVL 180
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
+ L L+ N I + L L SL + IGD G++ L L ++N+
Sbjct: 181 AACTQLTTLDANRNGIGVDGATALAACPTLRSLGIGGNAIGDAGVLALAANARLTTLNVE 240
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
TG+ + LA +L L LD I + G AL + T LT L L +I GA L
Sbjct: 241 STGVGAVGVGALAASKALTWLRLDGNGIGNAGATALAASTRLTTLHLARNKIGAEGAQAL 300
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
L +L++ + D GV+ + ++L L + +N +L D++ +++ L +L++
Sbjct: 301 AANTKLTTLDLGYNKIGDTGVRALAANATLVSLTVRRN-DLKDESAVILAASRTLTTLDL 359
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
S + I G + L + TL + V++NDIK
Sbjct: 360 SGNGIEDQGAKALAA-----NPTLTTLDVSSNDIK 389
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 130/322 (40%), Gaps = 51/322 (15%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+D+S + + D G L C+ L +LD N N
Sbjct: 161 TLRSLDVSDNRIGDEGARVLAACTQLTTLDAN--------------------------RN 194
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G A A L L + GG N I D+ + L+
Sbjct: 195 GIGVDGATALAACPTLRSLGI-------GG------------------NAIGDAGVLALA 229
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L +L + + V G+ L + LT L L+G + A +L+A L L+L R
Sbjct: 230 ANARLTTLNVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATALAASTRLTTLHLAR 289
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++ +G + + L L+LG+N+I D + L L SL + + DE V L
Sbjct: 290 NKIGAEGAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLTVRRNDLKDESAVILA 349
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L +++LS GI D + LA +L +L++ + I + G AL + L LDL
Sbjct: 350 ASRTLTTLDLSGNGIEDQGAKALAANPTLTTLDVSSNDIKNAGARALAANARLVWLDLRH 409
Query: 358 ARITDSGAAYLRNFKNLRSLEI 379
R+ ++G L + L SL +
Sbjct: 410 NRMEEAGTRALLANRTLSSLGV 431
>gi|290998898|ref|XP_002682017.1| predicted protein [Naegleria gruberi]
gi|284095643|gb|EFC49273.1| predicted protein [Naegleria gruberi]
Length = 408
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 128/253 (50%), Gaps = 2/253 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I N I K +S + L SL IS +++ G+ ++ +++LT L++
Sbjct: 154 MTQLTSLDIS-VNRIGVEGAKFISEMKQLTSLDISVNRIGVEGVKFISEMKQLTSLDISD 212
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L L+++ ++ +G + S++ L LN+ N I E + +
Sbjct: 213 NQIGLEGSKYISEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLNISVNRIGVEGVKFIS 272
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L SL++ IG G ++ +T L S+++S I D + ++ + L SL++
Sbjct: 273 EMKQLTSLDISDNQIG-LGAKYISEMTQLTSLDISVNRIGDEGAKFISEMKQLTSLDICD 331
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QI G ++ +T LT L + RI GA ++ K L SL+I G + D GVK I
Sbjct: 332 NQIGVEGAKFISEMTQLTSLVITSNRIGVEGAKFISEMKQLTSLDISGNRIGDEGVKFIS 391
Query: 394 DLSSLTLLNLSQN 406
++ LT LN+S N
Sbjct: 392 EMKQLTSLNISVN 404
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 135/277 (48%), Gaps = 24/277 (8%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
++ +++LT LN+ + +S + L L+++ ++ +G + S++ L L+
Sbjct: 126 FISEMKQLTSLNISDNQIGLEGAKYISEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLD 185
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
+ N I E + + + L SL++ IG EG ++ +T L S+++S I +
Sbjct: 186 ISVNRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTSLDISVNRIGVEGAK 245
Query: 319 KLAGLSSLKSLNL--------------DARQIT-------DTGLAA--LTSLTGLTHLDL 355
++ + L SLN+ + +Q+T GL A ++ +T LT LD+
Sbjct: 246 FISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQIGLGAKYISEMTQLTSLDI 305
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
RI D GA ++ K L SL+IC + G K I +++ LT L ++ N + + +
Sbjct: 306 SVNRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSLVITSN-RIGVEGAK 364
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
IS + L SL++S +RI G++ + +K L SL +
Sbjct: 365 FISEMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNI 401
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 5/228 (2%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ S+ L ++R L KF S++ L LN+ N+I E ++ +T L SL++
Sbjct: 105 MNSIVNLKVSRRLLDSLEQPKFISEMKQLTSLNISDNQIGLEGAKYISEMTQLTSLDISV 164
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
IG EG ++ + L S+++S I ++ ++ + L SL++ QI G ++
Sbjct: 165 NRIGVEGAKFISEMKQLTSLDISVNRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYIS 224
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
+T LT LD+ RI GA ++ K L SL I + GVK I ++ LT L++S
Sbjct: 225 EMTQLTSLDISVNRIGVEGAKFISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISD 284
Query: 406 N-CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
N L K IS +T L SL++S +RI G + + +K L SL +
Sbjct: 285 NQIGLGAK---YISEMTQLTSLDISVNRIGDEGAKFISEMKQLTSLDI 329
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 138/283 (48%), Gaps = 4/283 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++S + + G ++ + + L SLD + +I G + + + LTSL
Sbjct: 128 SEMKQLTSLNISDNQIGLEGAKYISEMTQLTSLDISVN-RIGVEGAKFISEMKQLTSLDI 186
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G+K + + L LD+ G + + +L SL+I N I
Sbjct: 187 SVNR-IGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTSLDIS-VNRIGVEGA 244
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS +++ G+ ++ +++LT L++ + +S + L L
Sbjct: 245 KFISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQIGLGA-KYISEMTQLTSL 303
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+++ ++ D+G + S++ L L++ N+I E + +T L SL + S IG EG
Sbjct: 304 DISVNRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSLVITSNRIGVEGA 363
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
++ + L S+++S I D ++ ++ + L SLN+ +I
Sbjct: 364 KFISEMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNISVNRI 406
>gi|431930507|ref|YP_007243553.1| TIR domain-containing protein [Thioflavicoccus mobilis 8321]
gi|431828810|gb|AGA89923.1| TIR domain-containing protein [Thioflavicoccus mobilis 8321]
Length = 1283
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/313 (33%), Positives = 151/313 (48%), Gaps = 27/313 (8%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L NL L L +L C+ +D+ PL+GLTNL++L C+ VTD + L GL L
Sbjct: 108 LSNLGFLAGLTALQYLKCSSTQVADLTPLAGLTNLQALDCGCTPVTD--LTPLAGLTNLR 165
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+ PV A L+ L+ L +L L+ +++D + + L+ L+ G + D
Sbjct: 166 SLDCAYTPV--AGLEPLADLTTLKSLDCRHTRVAD--LAPLAGLTELQFLDCGDTRVAD- 220
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L + L NL+SL+ + D L L GL NL++++ FT ++D L LA L++L+
Sbjct: 221 -LEPVASLANLQSLDCGGTRVVD--LTPLAGLANLQALDCGFTQVAD--LAPLASLTNLQ 275
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD- 386
SL+ + +TD G L SL L L + D A L NL SL + D
Sbjct: 276 SLDCRSAPVTDLG--PLASLGNLQSLICQFTPVAD--LAPLAGLTNLLSLNCWNTPVIDL 331
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
A + I +L SL NC+ T L ++GLT L SL + S +T L L L
Sbjct: 332 APLASIGNLQSL-------NCSSTPVADLASLAGLTNLRSLECAGSPVTD--LAPLAGLT 382
Query: 446 NLRSLTLESCKVT 458
NLRSL E V
Sbjct: 383 NLRSLDCEGTPVA 395
>gi|344169683|emb|CCA82044.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
[blood disease bacterium R229]
Length = 590
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 124/426 (29%), Positives = 186/426 (43%), Gaps = 32/426 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
++L + LSG DVTD L L ++L++LD + C QI+ G+ HL L L L+
Sbjct: 121 AALEKLTLSG-DVTDDDLKGLP--ASLKALDLSDCRAQITSEGIAHLSKLP-LVRLNVSH 176
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I A+G + A + L +LD+ G L L LN+ N I D +
Sbjct: 177 NR-IDAEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTLLNVG-NNRIGDRGAQA 234
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ T L SL S + + +G+ L L L+L P+ +L+ +L LN+
Sbjct: 235 LAANTKLTSLNASANGIGSAGVQALAANATLAALDLSCTPIDEESAQALARNTTLTSLNV 294
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-- 293
+L D G + +L LN+ NEI E L T+L SL++ +G +G
Sbjct: 295 RLSRLGDAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQA 354
Query: 294 ----VNLTGL------------------TNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+ LT L T L S+++S G+ R +L SL +
Sbjct: 355 LATSMTLTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRI 414
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
I D G L T LT LD+ RI ++GA L L SL I G + GV
Sbjct: 415 ATNMIGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLR 474
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+ ++L LN+S+N +L T L SL V+ + I + G R L K L SL+
Sbjct: 475 LARNTTLAALNVSRNQIGVAGAQDLARNTT-LRSLVVNYNEIGNEGARALAGNKTLVSLS 533
Query: 452 LESCKV 457
+ C++
Sbjct: 534 VVDCRI 539
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 155/376 (41%), Gaps = 27/376 (7%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN- 116
+L +D+S +D+ G L D + L L+ +I D G + L + LTSL+ N
Sbjct: 192 TLTELDISHNDIRADGAQALADSATLTLLNVGNN-RIGDRGAQALAANTKLTSLNASANG 250
Query: 117 ----------------------NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKG 153
I + +A A L L++ R +R+ G L
Sbjct: 251 IGSAGVQALAANATLAALDLSCTPIDEESAQALARNTTLTSLNV-RLSRLGDAGARALAA 309
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L SLN+ N I K L+ T+L SL I +KV G L LT L +
Sbjct: 310 TTTLTSLNVS-LNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVIHR 368
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ A +L+ L L+++ L G F +L L + N I DE L
Sbjct: 369 NRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRIATNMIGDEGAKWLA 428
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
T L SL++ IG+ G L G T L S+N+S I + +LA ++L +LN+
Sbjct: 429 RNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARNTTLAALNVSR 488
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QI G L T L L + I + GA L K L SL + + D G +
Sbjct: 489 NQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLVSLSVVDCRIGDEGAHALA 548
Query: 394 DLSSLTLLNLSQNCNL 409
++L LL++S N ++
Sbjct: 549 ANTTLALLDVSLNRHI 564
>gi|290997259|ref|XP_002681199.1| predicted protein [Naegleria gruberi]
gi|284094822|gb|EFC48455.1| predicted protein [Naegleria gruberi]
Length = 449
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 134/290 (46%), Gaps = 35/290 (12%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L L I CSK + I + L LT LN C +++ L L L L L
Sbjct: 155 KSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYLNASQCNISSVNLKFLQ-LFKLTKL 213
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L++ + DG + + + +LK LNL IT++C+ HL LT L LN+ IG+EGL
Sbjct: 214 DLSKNNIGGDGMKVIALLTNLKYLNLQDCNITNDCITHLTSLTKLVHLNVGDNYIGNEGL 273
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
++ L NL++ + G+ R+ + RQ+
Sbjct: 274 FLISSLR-----NLTYLSVERGTGRR-----------FNERQVDIANQ------------ 305
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
G I G A+L N NLR L+ G + D G++ I L+S+ +LN+S+ CN +
Sbjct: 306 ---GMEINHQGIAHLTNLHNLRHLDFSGKPICDKGIEFIGKLNSIEILNVSR-CNCSGD- 360
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+E + L++LN+ + I G L + L L +C ++ + +K
Sbjct: 361 IESLQKSPHLINLNIVGNPIGDKGAEILSRM-TLEELNARNCGISYDGVK 409
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 106/230 (46%), Gaps = 23/230 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
SNL L+ + C IS L+ L+ L LT L +NN I GMK A L NL L+L+
Sbjct: 185 SNLTYLNASQC-NISSVNLKFLQ-LFKLTKLDLSKNN-IGGDGMKVIALLTNLKYLNLQD 241
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS---------- 190
C + + +L L KL LN+ N I + + +S L NL L +
Sbjct: 242 CNITNDCITHLTSLTKLVHLNV-GDNYIGNEGLFLISSLRNLTYLSVERGTGRRFNERQV 300
Query: 191 -------KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
++ GIA+L L L L+ G P+ ++ + L S+ LN++RC S D
Sbjct: 301 DIANQGMEINHQGIAHLTNLHNLRHLDFSGKPICDKGIEFIGKLNSIEILNVSRCNCSGD 360
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
E K L LN+ N I D+ L +T LE LN +CGI +G+
Sbjct: 361 -IESLQKSPHLINLNIVGNPIGDKGAEILSRMT-LEELNARNCGISYDGV 408
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 138/280 (49%), Gaps = 24/280 (8%)
Query: 185 LQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN-LNRCQLS 241
+Q+S C V + + +L L++LTLL P+ + GS++YLN + ++
Sbjct: 22 IQLSQCPTVDELKALRHLSALKELTLL--RELPL---------SYGSIYYLNNITSLKVR 70
Query: 242 DDGCEKFSKIGSLKVLNLGFN-----EITDECLVHLKGLTNLES--LNLDSCGIGDEGLV 294
+ ++ LK L + N + TD + + L NLES + + + E
Sbjct: 71 FNTVVLIPRMNHLKHLEILENPNEKSQFTDIRVGTICKLKNLESFVVRFPNPRLPPEYFE 130
Query: 295 NLTGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
L+ L+ L + +S +D K ++ S L LN+ + + + ++ SL+ LT+L
Sbjct: 131 KLSVLSKLTELEISTDSSNDWEKAKSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYL 190
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
+ I+ +L+ FK L L++ + G+K I L++L LNL Q+CN+T+
Sbjct: 191 NASQCNISSVNLKFLQLFK-LTKLDLSKNNIGGDGMKVIALLTNLKYLNL-QDCNITNDC 248
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
+ ++ LT LV LNV ++ I + GL + L+NL L++E
Sbjct: 249 ITHLTSLTKLVHLNVGDNYIGNEGLFLISSLRNLTYLSVE 288
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 109/262 (41%), Gaps = 32/262 (12%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEIT-D 266
+ L CP T L +L L +L L L R LS + I SLKV FN +
Sbjct: 22 IQLSQCP-TVDELKALRHLSALKELTLLRELPLSYGSIYYLNNITSLKV---RFNTVVLI 77
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ HLK L LE+ N S FT I G++ KL L S
Sbjct: 78 PRMNHLKHLEILENPNEKS----------------------QFTDIRVGTICKLKNLESF 115
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLT 385
+ ++ L+ L+ LT L++ D A + F L L I
Sbjct: 116 -VVRFPNPRLPPEYFEKLSVLSKLTELEISTDSSNDWEKAKSISTFSQLTKLNIQCSKNI 174
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
+ + + LS+LT LN SQ CN++ L+ + L L L++S + I G++ + L
Sbjct: 175 NMIITSVGSLSNLTYLNASQ-CNISSVNLKFLQ-LFKLTKLDLSKNNIGGDGMKVIALLT 232
Query: 446 NLRSLTLESCKVTANDIKRLQS 467
NL+ L L+ C +T + I L S
Sbjct: 233 NLKYLNLQDCNITNDCITHLTS 254
>gi|149918909|ref|ZP_01907395.1| hypothetical protein PPSIR1_16600 [Plesiocystis pacifica SIR-1]
gi|149820283|gb|EDM79700.1| hypothetical protein PPSIR1_16600 [Plesiocystis pacifica SIR-1]
Length = 1503
Score = 87.8 bits (216), Expect = 1e-14, Method: Composition-based stats.
Identities = 69/202 (34%), Positives = 105/202 (51%), Gaps = 7/202 (3%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGI---AYLKGLQKLTLLNLEGCPVTAACLDSL 224
I D+ ++ LS LT L+ L +S + +T +G+ +++ GL +L+L + +G A + L
Sbjct: 90 IDDAMVEVLSKLTGLQILDLSRNAITATGVESLSWIGGLTQLSLRSNQGVGDRGA--EIL 147
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
++L SL LNL+RC + G + K+G L+ L L N I DE V L L L L L
Sbjct: 148 ASLRSLEVLNLDRCGIGPIGAQALGKLGELRELVLSHNRILDEGAVALAKLAKLRELELS 207
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAA 343
C +GDEG L L LE + L + + AG L L+ L L Q+ + G +
Sbjct: 208 VCQLGDEGAAALAKLRALEILRLGGNHVGPKAAAAFAGHLDKLQELELAVNQVGEEGARS 267
Query: 344 LTSLTG-LTHLDLFGARITDSG 364
L+ + G L LDL +I D+G
Sbjct: 268 LSGMLGHLRRLDLSYNKIGDAG 289
Score = 76.3 bits (186), Expect = 3e-11, Method: Composition-based stats.
Identities = 75/218 (34%), Positives = 107/218 (49%), Gaps = 7/218 (3%)
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
+GL++L L+ L+ + A ++ LS L L L+L+R ++ G E S IG L L+L
Sbjct: 78 QGLERLALVALD---IDDAMVEVLSKLTGLQILDLSRNAITATGVESLSWIGGLTQLSLR 134
Query: 261 FNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
N+ + D L L +LE LNLD CGIG G L L L + LS I D
Sbjct: 135 SNQGVGDRGAEILASLRSLEVLNLDRCGIGPIGAQALGKLGELRELVLSHNRILDEGAVA 194
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI-TDSGAAYLRNFKNLRSLE 378
LA L+ L+ L L Q+ D G AAL L L L L G + + AA+ + L+ LE
Sbjct: 195 LAKLAKLRELELSVCQLGDEGAAALAKLRALEILRLGGNHVGPKAAAAFAGHLDKLQELE 254
Query: 379 ICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLE 415
+ + + G + + L L L+LS N + D LE
Sbjct: 255 LAVNQVGEEGARSLSGMLGHLRRLDLSYN-KIGDAGLE 291
Score = 65.1 bits (157), Expect = 8e-08, Method: Composition-based stats.
Identities = 69/257 (26%), Positives = 114/257 (44%), Gaps = 29/257 (11%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVN 150
+ I D +E L L+ L L RN AITA G+++ + + L +L L + G
Sbjct: 88 LDIDDAMVEVLSKLTGLQILDLSRN-AITATGVESLSWIGGLTQLSLRSNQGVGDRGAEI 146
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L L LE LN+ C I + L L L+ L +S +++ D G
Sbjct: 147 LASLRSLEVLNLDRCG-IGPIGAQALGKLGELRELVLSHNRILDEGAV------------ 193
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+L+ L L L L+ CQL D+G +K+ +L++L LG N + +
Sbjct: 194 ------------ALAKLAKLRELELSVCQLGDEGAAALAKLRALEILRLGGNHVGPKAAA 241
Query: 271 HLKG-LTNLESLNLDSCGIGDEGLVNLTG-LTNLESINLSFTGISDGSLRKLAGLSSLKS 328
G L L+ L L +G+EG +L+G L +L ++LS+ I D L L +
Sbjct: 242 AFAGHLDKLQELELAVNQVGEEGARSLSGMLGHLRRLDLSYNKIGDAGLEGLLQPWGKRR 301
Query: 329 LNLDARQITDTGLAALT 345
+ L+ + + G+ ++
Sbjct: 302 VALEHLDLIENGITLVS 318
Score = 46.2 bits (108), Expect = 0.038, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 341 LAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
LAAL GL L L I D+ L L+ L++ +T GV+ + + LT
Sbjct: 70 LAALVERGQGLERLALVALDIDDAMVEVLSKLTGLQILDLSRNAITATGVESLSWIGGLT 129
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L+L N + D+ E+++ L L LN+ I G + L L LR L L ++
Sbjct: 130 QLSLRSNQGVGDRGAEILASLRSLEVLNLDRCGIGPIGAQALGKLGELRELVLSHNRI 187
>gi|326427049|gb|EGD72619.1| hypothetical protein PTSG_04354 [Salpingoeca sp. ATCC 50818]
Length = 1165
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 178/409 (43%), Gaps = 35/409 (8%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP +++++ L S++AFR C +Q L V D ++ V+ +Q +L
Sbjct: 736 LPETLAREVMTAAAEKETLNSKSIKAFRSCGIQHLAFRSSVVVTDAFLRVLGTQFPTLYE 795
Query: 62 VDLSGSDV-TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA-I 119
+++ + T G+ LK NL SL + +D ++ L L L S N A +
Sbjct: 796 LEIYDCPMLTFRGIAALKGAPNLASLHLSGA--FTDSCVDALMSLHPLEHFSL--NGARV 851
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
++Q F L T H L+SL + C + D + + GL
Sbjct: 852 SSQQFARF----------LSSPTATH-----------LQSLALTSCPALDDGILPSICGL 890
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
T+L L +S + V + L L L LNL + + +L+A ++ L L
Sbjct: 891 TDLGHLSLSKTPV--RAVGQLASLPHLYSLNLSYTRASEREVGALAAATNMTTLGLFGLN 948
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLT 297
LS D ++ GSL L L + D CL H+ LT++ +L+L + +GL +
Sbjct: 949 LSSDAYAPWAGHGSLAELTLSSRDSFDDACLAHVCTLTHVTTLDLSGYYQLTPDGLKAIA 1008
Query: 298 GLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+ L+S++LS T ++D +L + GL SL + ++ +TD A + L+L
Sbjct: 1009 AMQQLQSLSLSNTALTDAALLHIGGVGLPSLDTFDISRTDVTDACAPAFKGFAAVARLNL 1068
Query: 356 FGARITDS--GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
RIT++ A L + L++L I + G+ + LS L +N
Sbjct: 1069 SRTRITNTFFHAHALNDCAALQTLSIERTHTSTKGLAELNGLSRLQSVN 1117
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 161/354 (45%), Gaps = 48/354 (13%)
Query: 157 LESLNIKWCNCITDSDMKPL-SGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++ L + +TD+ ++ L + L L+I C +T GIA LKG L L+L G
Sbjct: 767 IQHLAFRSSVVVTDAFLRVLGTQFPTLYELEIYDCPMLTFRGIAALKGAPNLASLHLSGA 826
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNE---ITDECLV 270
T +C+D+L +L L + +LN ++S +F S + + +L + D L
Sbjct: 827 -FTDSCVDALMSLHPLEHFSLNGARVSSQQFARFLSSPTATHLQSLALTSCPALDDGILP 885
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA--------- 321
+ GLT+L L+L + G L L +L S+NLS+T S+ + LA
Sbjct: 886 SICGLTDLGHLSLSKTPVRAVG--QLASLPHLYSLNLSYTRASEREVGALAAATNMTTLG 943
Query: 322 ---------------GLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGA-RITDSG 364
G SL L L +R D LA + +LT +T LDL G ++T G
Sbjct: 944 LFGLNLSSDAYAPWAGHGSLAELTLSSRDSFDDACLAHVCTLTHVTTLDLSGYYQLTPDG 1003
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKD--LSSLTLLNLSQNCNLTDKTLELISGLTG 422
+ + L+SL + LTDA + HI L SL ++S+ ++TD G
Sbjct: 1004 LKAIAAMQQLQSLSLSNTALTDAALLHIGGVGLPSLDTFDISRT-DVTDACAPAFKGFAA 1062
Query: 423 LVSLNVSNSRITSAGLRHLKPLKN---LRSLTLESCKVTA------NDIKRLQS 467
+ LN+S +RIT+ H L + L++L++E + N + RLQS
Sbjct: 1063 VARLNLSRTRITNTFF-HAHALNDCAALQTLSIERTHTSTKGLAELNGLSRLQS 1115
>gi|390335362|ref|XP_003724129.1| PREDICTED: uncharacterized protein LOC100890653 [Strongylocentrotus
purpuratus]
Length = 990
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 158/316 (50%), Gaps = 32/316 (10%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKL 206
L ++ + L SLN+ C ITD + ++ L L+ L +S +K +TD ++ L
Sbjct: 636 LQTVRPHIHLSSLNLASCPLITDQGLLQITSLKKLQHLNLSNNKSLTDKVFQTVQEFSSL 695
Query: 207 TLLNLEGCPVTAACLDSLSALGS--LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
T L LEG VT A L++ A+ L L+LNR ++D +++ LK NLG +
Sbjct: 696 TTLLLEGTGVTDAGLETFVAVPPPNLTNLSLNRTNVTDMAVLFLARLSKLK--NLGLEQT 753
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT-GIS-DGSLRKLAG 322
+ L H+ L+ L SLN+ + + L+ L +T+L+ +++S GI+ D +L L G
Sbjct: 754 QVKSLEHVGHLSQLVSLNVSRNRLQRDALLKLHQVTHLKVLHISHVEGITGDEALTCLQG 813
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
L ++ D TD GL + ++ L +DL ++ N+
Sbjct: 814 LQLMQLSLPDRHTTTDNGLKCIAGMS-LCSIDLT-------------DYSNI-------- 851
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
TDAG+ H+ D++SL L+++ N +T ++ +SGLT L+ L++ + + G + +
Sbjct: 852 --TDAGIHHLADMTSLHKLSIT-NTKVTSAGMQYLSGLTELLELHLDRTLVDDEGAKVIG 908
Query: 443 PLKNLRSLTLESCKVT 458
L L+ L++ K+T
Sbjct: 909 QLTKLQVLSMAETKIT 924
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 182/422 (43%), Gaps = 57/422 (13%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++++ EL S L +L F C LQ L L Y ++ + +
Sbjct: 589 VPPTVAERLLTELKKSGHLRPKTLMMFIPCHLQRLALDCYKYTTNELLQTVRPH------ 642
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
IHL SL+ C I+D GL + L L L+ N ++T
Sbjct: 643 -------------IHLS------SLNLASCPLITDQGLLQITSLKKLQHLNLSNNKSLTD 683
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ + +L L LE GL + P LTN
Sbjct: 684 KVFQTVQEFSSLTTLLLEGTGVTDAGLETFVAV--------------------PPPNLTN 723
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L ++ + VTD + +L L KL L LE V + L+ + L L LN++R +L
Sbjct: 724 LS---LNRTNVTDMAVLFLARLSKLKNLGLEQTQVKS--LEHVGHLSQLVSLNVSRNRLQ 778
Query: 242 DDGCEKFSKIGSLKVLNLGFNE-IT-DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
D K ++ LKVL++ E IT DE L L+GL ++ D D GL + G+
Sbjct: 779 RDALLKLHQVTHLKVLHISHVEGITGDEALTCLQGLQLMQLSLPDRHTTTDNGLKCIAGM 838
Query: 300 TNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L SI+L+ ++ I+D + LA ++SL L++ ++T G+ L+ LT L L L
Sbjct: 839 S-LCSIDLTDYSNITDAGIHHLADMTSLHKLSITNTKVTSAGMQYLSGLTELLELHLDRT 897
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGV--KHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+ D GA + L+ L + +TD + I ++ LNLS+ N++++ + +
Sbjct: 898 LVDDEGAKVIGQLTKLQVLSMAETKITDRFLLSNVINSCPHISRLNLSR-TNISERGITV 956
Query: 417 IS 418
+S
Sbjct: 957 LS 958
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 142/277 (51%), Gaps = 13/277 (4%)
Query: 43 GVNDKWMDV-IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
GV D ++ +A +L ++ L+ ++VTD ++ L S L++L Q LEH
Sbjct: 704 GVTDAGLETFVAVPPPNLTNLSLNRTNVTDMAVLFLARLSKLKNLGLE---QTQVKSLEH 760
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLES 159
+ LS L SL+ RN + + + +L L + I G L L+GL +L
Sbjct: 761 VGHLSQLVSLNVSRNR-LQRDALLKLHQVTHLKVLHISHVEGITGDEALTCLQGL-QLMQ 818
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L++ + TD+ +K ++G++ L S+ ++ S +TD+GI +L + L L++ VT+
Sbjct: 819 LSLPDRHTTTDNGLKCIAGMS-LCSIDLTDYSNITDAGIHHLADMTSLHKLSITNTKVTS 877
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH--LKGLT 276
A + LS L L L+L+R + D+G + ++ L+VL++ +ITD L+ +
Sbjct: 878 AGMQYLSGLTELLELHLDRTLVDDEGAKVIGQLTKLQVLSMAETKITDRFLLSNVINSCP 937
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
++ LNL I + G+ L+ L L +NL +T +S
Sbjct: 938 HISRLNLSRTNISERGITVLS-LPYLTLLNLDYTCVS 973
>gi|434405929|ref|YP_007148814.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
gi|428260184|gb|AFZ26134.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
Length = 384
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 166/314 (52%), Gaps = 37/314 (11%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ C + + L LK L KL S I SD+KPLS L NL L + +++ D I
Sbjct: 61 QNCNQANQKLTQLKEL-KLGSNKI--------SDIKPLSNLNNLIYLDLGFNQIID--IK 109
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
L L LT +N+ + + LS L L YLNL + + SD + S + +L L
Sbjct: 110 PLSNLTNLTGINIYYNQIID--IKPLSNLTKLIYLNLIKNEFSD--IKPLSNLTNLIYLG 165
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLSFTGISDGSL 317
L N+I D + L LTNL +L+L I D E L NLT LT L I ISD +
Sbjct: 166 LSRNQIND--IKPLSNLTNLTTLDLIENKISDIEPLSNLTKLTYLTLIE---NKISD--I 218
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
+ L+ L++L +L L +I+D + L++LT LT+L L +I+D L N NL SL
Sbjct: 219 KPLSNLTNLTALYLWNNEISD--IKHLSNLTKLTYLLLSENKISDIKP--LSNLTNLTSL 274
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
+ ++D +K + +L++LT LNL N ++D ++++S LT L SL + ++I+
Sbjct: 275 GLDENQISD--IKPLSNLTNLTYLNLGLN-QISD--IKVLSNLTNLTSLYLDYNQIS--- 326
Query: 438 LRHLKPLKNLRSLT 451
+++PL NL +LT
Sbjct: 327 --NIQPLFNLNNLT 338
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 118/270 (43%), Gaps = 52/270 (19%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
+L+G ++ + +I +K SNL L + I+ ++ L L+NL L RN
Sbjct: 116 NLTGINIYYNQIIDIKPLSNLTKLIYLNLIKNEFSDIKPLSNLTNLIYLGLSRNQI---N 172
Query: 123 GMKAFAGLINLVKLDL-----------------ERCTRIHGGLVNLKGLMKLESLN--IK 163
+K + L NL LDL T I + ++K L L +L
Sbjct: 173 DIKPLSNLTNLTTLDLIENKISDIEPLSNLTKLTYLTLIENKISDIKPLSNLTNLTALYL 232
Query: 164 WCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
W N I+D SD+KPLS LTNL SL + ++++D I L L
Sbjct: 233 WNNEISDIKHLSNLTKLTYLLLSENKISDIKPLSNLTNLTSLGLDENQISD--IKPLSNL 290
Query: 204 QKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
LT LNL ++ L +L+ L SL YL+ N+ + + +L ++L +N
Sbjct: 291 TNLTYLNLGLNQISDIKVLSNLTNLTSL-YLDYNQIS----NIQPLFNLNNLTKIDLDYN 345
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+I+D + L +T LE L + + I D+
Sbjct: 346 QISD--IKPLSNMTKLEKLEIQNNPIPDKA 373
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 72 SGLIHLKDCSNLQSL--DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
S + L + +NL SL D N QISD ++ LSNLT+L++ +K +
Sbjct: 260 SDIKPLSNLTNLTSLGLDEN---QISD-----IKPLSNLTNLTYLNLGLNQISDIKVLSN 311
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L NL L L+ + + N++ L L +L + SD+KPLS +T L+ L+I
Sbjct: 312 LTNLTSLYLD-----YNQISNIQPLFNLNNLTKIDLDYNQISDIKPLSNMTKLEKLEIQN 366
Query: 190 SKVTDSGIAYL 200
+ + D ++
Sbjct: 367 NPIPDKACPFI 377
>gi|259489824|ref|NP_001159243.1| uncharacterized protein LOC100304332 [Zea mays]
gi|223942967|gb|ACN25567.1| unknown [Zea mays]
gi|413920256|gb|AFW60188.1| hypothetical protein ZEAMMB73_234209 [Zea mays]
Length = 648
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 131/471 (27%), Positives = 225/471 (47%), Gaps = 53/471 (11%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCIQISD 96
L + GV + +D + + SL +VDLS D + L + L+ L + C+ ++D
Sbjct: 101 LARASGVGWRGLDALVAACPSLEAVDLSHCVAAGDREMAALAAAAGLRDLVMDKCLGVTD 160
Query: 97 GGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNLKGL 154
GL + G L SLS + I+ G+ A L LD+ + L +L L
Sbjct: 161 VGLAKVAVGCPGLQSLSLKWCREISDIGVDLLAKKCPQLRSLDISYLKVTNESLRSLSTL 220
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQK-------- 205
KLE + + C + D ++ LS ++L+S+ ++ C V+ G+A L Q+
Sbjct: 221 EKLEDIAMVSCLFVDDDGLQMLSMCSSLQSIDVARCHHVSSLGLASLMDGQRSLRKINVA 280
Query: 206 --------------------LTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQ-L 240
LT+L L+G + A+ +L A+GS L + L++C +
Sbjct: 281 HSLHEIEACVLSKLSTIGETLTVLRLDGLEIFAS---NLQAIGSTCKNLVEIGLSKCNGV 337
Query: 241 SDDGCEKF-SKIGSLKVLNLGFNEI-TDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNL 296
+DDG ++ L+ +++ + T+ L + + +E L L+SC + ++GL ++
Sbjct: 338 TDDGIVSLVARCRDLRTIDVTCCHLLTNAALAAIAENCRKIECLRLESCPFVSEKGLESI 397
Query: 297 TGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LTHL 353
L ++L+ I+L+ I+D +L++LA S L L L I+D GL +++ G L L
Sbjct: 398 ATLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSSISDEGLVYISANCGKLVEL 457
Query: 354 DLFG-ARITDSG-AAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
DL+ + +TD G AA K +R L +C +TD G+KH+ L L L L +T
Sbjct: 458 DLYRCSAVTDDGLAAVASGCKKMRMLNLCYCTQITDGGLKHVGGLEELANLELRCLVRVT 517
Query: 411 DKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHL-KPLKNLRSLTLESCKVT 458
+ I+ G + LV L++ + AGL L + +NLR LT+ C+VT
Sbjct: 518 GVGITSIAVGCSSLVELDLKRCYSVDDAGLWALSRYSQNLRQLTVSYCQVT 568
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 112/429 (26%), Positives = 205/429 (47%), Gaps = 47/429 (10%)
Query: 11 FNELVYSRCL--TEVSLE--AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
+LV +CL T+V L A LQ L L ++D +D++A + L S+D+S
Sbjct: 147 LRDLVMDKCLGVTDVGLAKVAVGCPGLQSLSLKWCREISDIGVDLLAKKCPQLRSLDISY 206
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
VT+ L L L+ + C+ + D GL+ L S+L S+ R + +++ G+ +
Sbjct: 207 LKVTNESLRSLSTLEKLEDIAMVSCLFVDDDGLQMLSMCSSLQSIDVARCHHVSSLGLAS 266
Query: 127 FA-GLINLVKL-------DLERCT--------------RIHGGLV---NLKGL----MKL 157
G +L K+ ++E C R+ G + NL+ + L
Sbjct: 267 LMDGQRSLRKINVAHSLHEIEACVLSKLSTIGETLTVLRLDGLEIFASNLQAIGSTCKNL 326
Query: 158 ESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSK-VTDSGIAYL-KGLQKLTLLNLEGC 214
+ + CN +TD + L + +L+++ ++C +T++ +A + + +K+ L LE C
Sbjct: 327 VEIGLSKCNGVTDDGIVSLVARCRDLRTIDVTCCHLLTNAALAAIAENCRKIECLRLESC 386
Query: 215 P-VTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
P V+ L+S++ L S L ++L C+++D ++ + L +L LG + I+DE LV+
Sbjct: 387 PFVSEKGLESIATLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSSISDEGLVY 446
Query: 272 LKG-LTNLESLNLDSC-GIGDEGLVNL-TGLTNLESINLSF-TGISDGSLRKLAGLSSLK 327
+ L L+L C + D+GL + +G + +NL + T I+DG L+ + GL L
Sbjct: 447 ISANCGKLVELDLYRCSAVTDDGLAAVASGCKKMRMLNLCYCTQITDGGLKHVGGLEELA 506
Query: 328 SLNLDA-RQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYL--RNFKNLRSLEICGGG 383
+L L ++T G+ ++ + L LDL D + R +NLR L +
Sbjct: 507 NLELRCLVRVTGVGITSIAVGCSSLVELDLKRCYSVDDAGLWALSRYSQNLRQLTVSYCQ 566
Query: 384 LTDAGVKHI 392
+T G+ H+
Sbjct: 567 VTGLGLCHL 575
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 98/237 (41%), Gaps = 50/237 (21%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P V++K ++ IA+ S L +DL+ + D+ L L CS L L C ISD GL +
Sbjct: 387 PFVSEKGLESIATLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSSISDEGLVY 446
Query: 102 LRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ L L R +A+T G+ A A G K+ L
Sbjct: 447 ISANCGKLVELDLYRCSAVTDDGLAAVA-----------------------SGCKKMRML 483
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
N+ +C ITD +K + GL L +L++ C +VT GI + GC
Sbjct: 484 NLCYCTQITDGGLKHVGGLEELANLELRCLVRVTGVGITSIA----------VGC----- 528
Query: 220 CLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGS-LKVLNLGFNEITDECLVHLKG 274
SL L+L RC DD G S+ L+ L + + ++T L HL G
Sbjct: 529 --------SSLVELDLKRCYSVDDAGLWALSRYSQNLRQLTVSYCQVTGLGLCHLLG 577
>gi|328950290|ref|YP_004367625.1| hypothetical protein Marky_0765 [Marinithermus hydrothermalis DSM
14884]
gi|328450614|gb|AEB11515.1| hypothetical protein Marky_0765 [Marinithermus hydrothermalis DSM
14884]
Length = 462
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 172/355 (48%), Gaps = 35/355 (9%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+L+++DL G+ + D L L + L+ LD +I+D L L+NLT L
Sbjct: 81 EHAVNLVTLDLKGNRIAD--LTPLAELRYLEELDL-VSNRITD-----LAPLANLTRLKR 132
Query: 114 RR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
NN + Q ++ AGL L +L + R+ L L L +L L + W N +TD
Sbjct: 133 LHLGNNQV--QSLEPLAGLTQLTELRIGN-NRV-ADLAPLADLGRLAVL-VAWRNAVTD- 186
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
++PL+ LT ++ L ++ ++VTD + L L +L L L + A L L+ L L
Sbjct: 187 -LQPLANLTRMRVLSLASNRVTD--LTPLAELAQLDTLFLSENQI--ADLAPLAGLTQLK 241
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L+L+ +++ + +++ L L L N+I D L L GLTNL+ L+ I D
Sbjct: 242 VLSLDFNRITH--LDPLARLVELTELGLDANQIAD--LTPLAGLTNLQVLSASENRIAD- 296
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
L L GL LE + L+F I D S L GL +LK L L+ QI + LA L LT L
Sbjct: 297 -LTPLGGLVRLEQLGLNFNRIRDIS--ALEGLKALKVLELEGNQIVN--LAPLAGLTELR 351
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L L RI D L NL LE+ +TD G + L +L ++L +N
Sbjct: 352 VLVLGQNRIAD--LTPLGALVNLVQLEVSRNEITDLGA--LAQLENLVRVSLVRN 402
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 115/261 (44%), Gaps = 46/261 (17%)
Query: 124 MKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ AGL L + LD R T + L L++L L + N I +D+ PL+GLTN
Sbjct: 231 LAPLAGLTQLKVLSLDFNRITHLDP----LARLVELTELGLD-ANQI--ADLTPLAGLTN 283
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L+ L S +++ D + L GL +L L LN NR +
Sbjct: 284 LQVLSASENRIAD--LTPLGGLVRLEQLG----------------------LNFNRIR-- 317
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
+ +LKVL L N+I + L L GLT L L L I D L L L N
Sbjct: 318 --DISALEGLKALKVLELEGNQIVN--LAPLAGLTELRVLVLGQNRIAD--LTPLGALVN 371
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARI 360
L + +S I+D L LA L +L ++L ++T+ G L A L G +D+ +
Sbjct: 372 LVQLEVSRNEITD--LGALAQLENLVRVSLVRNRVTNLGPLVANAGLQGGEVIDVRLNCL 429
Query: 361 TDSGAAYLRNFKNLRSLEICG 381
SG + F+ L++LE G
Sbjct: 430 DLSGDPEV--FEQLKALEARG 448
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 29/156 (18%)
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
L+ L++LN R+I L L L LDL G RI D L + L L++
Sbjct: 61 LARLEALNAAERRIQ--SLEGLEHAVNLVTLDLKGNRIAD--LTPLAELRYLEELDLVSN 116
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA------ 436
+TD + + +L+ L L+L N ++LE ++GLT L L + N+R+
Sbjct: 117 RITD--LAPLANLTRLKRLHLGNN---QVQSLEPLAGLTQLTELRIGNNRVADLAPLADL 171
Query: 437 -----------GLRHLKPLKNL---RSLTLESCKVT 458
+ L+PL NL R L+L S +VT
Sbjct: 172 GRLAVLVAWRNAVTDLQPLANLTRMRVLSLASNRVT 207
>gi|290972196|ref|XP_002668843.1| predicted protein [Naegleria gruberi]
gi|284082373|gb|EFC36099.1| predicted protein [Naegleria gruberi]
Length = 348
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 112/214 (52%), Gaps = 16/214 (7%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D++ +S L NLK+L IS + + + G+ + L LT LN+E + + +S L +L
Sbjct: 8 NDVQDISKLVNLKTLNISINNIGNEGLIIVCNLINLTNLNIENNDIGDEGVQDISKLVNL 67
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN----------------EITDECLVHLKG 274
LN+ L G ++ SK+ +L LN+ N +I ++ + +
Sbjct: 68 TNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNLSRNNITHQIENDGIKSIFN 127
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L NL +LN+ + IGDEG+ +++ L NL ++++ I D ++ + L +L +LN+
Sbjct: 128 LINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLINLTNLNIQNN 187
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
I D G+ ++ L LT+LD+ +I D+GA +
Sbjct: 188 DIGDEGVQDISKLINLTNLDICQTKIGDNGAKEI 221
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++++S +++ + GLI + + NL +L+ I D G++ + L NLT+L+ + N
Sbjct: 18 NLKTLNISINNIGNEGLIIVCNLINLTNLNIENN-DIGDEGVQDISKLVNLTNLNIKSN- 75
Query: 118 AITAQGMKAFAGLINLVKLD------------LERCTRIH----GGLVNLKGLMKLESLN 161
A+ ++G + + L NL L+ L R H G+ ++ L+ L +LN
Sbjct: 76 ALRSKGAQEISKLTNLTSLNVAENNVMLSEKNLSRNNITHQIENDGIKSIFNLINLTNLN 135
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
I+ N I D ++ +S L NL +L I +K+ D GI + L LT LN++ + +
Sbjct: 136 IQ-NNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLINLTNLNIQNNDIGDEGV 194
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
+S L +L L++ + ++ D+G ++ K+ +L
Sbjct: 195 QDISKLINLTNLDICQTKIGDNGAKEICKLINL 227
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 26/233 (11%)
Query: 66 GSDVTD-SGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
G+DV D S L++LK N I I + GL + L NLT+L+ NN I +G
Sbjct: 7 GNDVQDISKLVNLKT--------LNISINNIGNEGLIIVCNLINLTNLNIE-NNDIGDEG 57
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC---------------I 168
++ + L+NL L+++ G + L L SLN+ N I
Sbjct: 58 VQDISKLVNLTNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNLSRNNITHQI 117
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+ +K + L NL +L I + + D G+ + L LT L++ + + S+ L
Sbjct: 118 ENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLI 177
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+L LN+ + D+G + SK+ +L L++ +I D + L NL L
Sbjct: 178 NLTNLNIQNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEICKLINLTKL 230
>gi|290980538|ref|XP_002672989.1| predicted protein [Naegleria gruberi]
gi|284086569|gb|EFC40245.1| predicted protein [Naegleria gruberi]
Length = 315
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 26/228 (11%)
Query: 160 LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K+ + + DS + +S + L SL I +++ D G Y+ +++LT LN+ G +
Sbjct: 107 VNVKFSSWLLDSFERAEFISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIG 166
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+S + L L+ ++ D+G + S++ L L++G N+I DE + G+
Sbjct: 167 IKGAKLISEMKQLTSLHTYNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKR 226
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L SL++ + IGDEG + ++G+ L SLN+ +I
Sbjct: 227 LTSLHIYNNRIGDEG------------------------AKLISGMKQLTSLNIGVNEIG 262
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
D G ++ + LT L ++ RI D GA Y+ K L SL I G L
Sbjct: 263 DEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMKQLTSLNIGGNELV 310
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 4/186 (2%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
E + +K LT SLN+ + IGD G + + L S+N+ I + ++ + L
Sbjct: 123 EFISEMKQLT---SLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQL 179
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
SL+ +I D G ++ + LT LD+ G +I D GA + K L SL I + D
Sbjct: 180 TSLHTYNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRIGD 239
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G K I + LT LN+ N + D+ +LISG+ L SL + N+RI G +++ +K
Sbjct: 240 EGAKLISGMKQLTSLNIGVN-EIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMKQ 298
Query: 447 LRSLTL 452
L SL +
Sbjct: 299 LTSLNI 304
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
++ + L S+N+ I D + + + L SLN+ +I G ++ + LT L
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+ RI D GA Y+ K L SL+I G + D G K I + LT L++ N + D+ +
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNN-RIGDEGAK 243
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
LISG+ L SLN+ + I G + + +K L SL + + ++
Sbjct: 244 LISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRI 285
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L LN+ ++ D G + +++ L LN+G N I + + + L SL+
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+ IGDEG ++ + L S+++ I D + ++G+ L SL++ +I D G
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRIGDEGAKL 244
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT L++ I D GA + K L SL+I + D G K+I ++ LT LN+
Sbjct: 245 ISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMKQLTSLNI 304
Query: 404 SQN 406
N
Sbjct: 305 GGN 307
>gi|428317856|ref|YP_007115738.1| Tetratricopeptide TPR_1 repeat-containing protein [Oscillatoria
nigro-viridis PCC 7112]
gi|428241536|gb|AFZ07322.1| Tetratricopeptide TPR_1 repeat-containing protein [Oscillatoria
nigro-viridis PCC 7112]
Length = 1221
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 149/287 (51%), Gaps = 29/287 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++LS + +TD + L +NL+ L QISD ++ L GL+NLT L
Sbjct: 105 SKFTNLRKLNLSINQITD--VQPLSGLTNLRYLTLT-SNQISD--VKPLSGLTNLTLLYL 159
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDS 171
N + + + F L L L + + T + GL NL+ L+ LN N I S
Sbjct: 160 ADNQIVDIKPLSKFTNLRRL-NLSVNQITDVQPLSGLTNLRSLV----LNF---NQI--S 209
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D+KPLSGLTNL L + +++ D + L GL LT L+L + LS + L
Sbjct: 210 DVKPLSGLTNLTELFLEANQIVD--VKPLAGLTNLTGLSLASNQIVDVT--PLSTMTELN 265
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+L L+ +++D + S + +L VL L N+I D + L GLTNL +L+L I D
Sbjct: 266 FLYLSGNKIAD--VKPLSGLTNLIVLFLASNQIAD--VKPLSGLTNLPTLDLSRNQIADA 321
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L GLTNL +++LS I+D + LAGL L +L+L QI D
Sbjct: 322 --TPLAGLTNLTNLDLSRNQIADAT--PLAGLVYLTTLDLSRNQIPD 364
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 137/301 (45%), Gaps = 48/301 (15%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNL--------- 151
+ L+NLT LS RN + + + F L L L + + T + GL NL
Sbjct: 83 KTLTNLTELSLIRNQIVDIKPLSKFTNLRKL-NLSINQITDVQPLSGLTNLRYLTLTSNQ 141
Query: 152 ----KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------- 194
K L L +L + + D+KPLS TNL+ L +S +++TD
Sbjct: 142 ISDVKPLSGLTNLTLLYLADNQIVDIKPLSKFTNLRRLNLSVNQITDVQPLSGLTNLRSL 201
Query: 195 -------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S + L GL LT L LE + + L+ L +L L+L Q+ D
Sbjct: 202 VLNFNQISDVKPLSGLTNLTELFLEANQIV--DVKPLAGLTNLTGLSLASNQIVD--VTP 257
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
S + L L L N+I D + L GLTNL L L S I D + L+GLTNL +++L
Sbjct: 258 LSTMTELNFLYLSGNKIAD--VKPLSGLTNLIVLFLASNQIAD--VKPLSGLTNLPTLDL 313
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
S I+D + LAGL++L +L+L QI D L L LT LDL +I D A
Sbjct: 314 SRNQIADAT--PLAGLTNLTNLDLSRNQIADA--TPLAGLVYLTTLDLSRNQIPDGEAER 369
Query: 368 L 368
L
Sbjct: 370 L 370
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 113/237 (47%), Gaps = 44/237 (18%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++LS + +TD + L +NL+SL NF QISD ++ L GL+NLT L
Sbjct: 171 SKFTNLRRLNLSVNQITD--VQPLSGLTNLRSLVLNFN-QISD--VKPLSGLTNLTELFL 225
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITD- 170
N + +K AGL NL L L +V++ L + LN + N I D
Sbjct: 226 EANQIV---DVKPLAGLTNLTGLSL-----ASNQIVDVTPLSTMTELNFLYLSGNKIADV 277
Query: 171 -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+D+KPLSGLTNL +L +S +++ D+ L GL LT L+L
Sbjct: 278 KPLSGLTNLIVLFLASNQIADVKPLSGLTNLPTLDLSRNQIADA--TPLAGLTNLTNLDL 335
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
+ A L+ L L L+L+R Q+ D E+ I K L N+ TDE
Sbjct: 336 SRNQIADAT--PLAGLVYLTTLDLSRNQIPDGEAERL--IQKNKQL---LNQKTDEA 385
>gi|302767392|ref|XP_002967116.1| hypothetical protein SELMODRAFT_87311 [Selaginella moellendorffii]
gi|300165107|gb|EFJ31715.1| hypothetical protein SELMODRAFT_87311 [Selaginella moellendorffii]
Length = 637
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 200/432 (46%), Gaps = 55/432 (12%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQ + L G++D + +AS L ++D+S +++TD G+ L + +L+ L+ C
Sbjct: 171 LQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACS 230
Query: 93 QISDGGLEH------------LRGLSNL-------TSLSF---------RRNNAITAQGM 124
+ D GL R ++N+ SL F ++ + IT Q +
Sbjct: 231 NVGDAGLTRTSTSLLELDLSCCRSVTNVGISFLSKRSLQFLKLGFCSPVKKRSQITGQLL 290
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPL-SGLTN 181
+A L + L L C I G + G ++L L++ C +TDS M + G N
Sbjct: 291 EAVGKLTQIQTLKLAGC-EIAGDGLRFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKN 349
Query: 182 LKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL----GSLFYL 233
L+ L ++C +++T IA + L L +E C + +++ L L L
Sbjct: 350 LRKLDLTCCLDLTEITAYNIA--RSSAGLVSLKIEACRILTE--NNIPLLMERCSCLEEL 405
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCG-IGDE 291
++ C + D G E +K LK L LGF +++D + H+ + ++L L+L G +GD
Sbjct: 406 DVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDA 465
Query: 292 GLVNL-TGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLT 348
G+ ++ G L +NLS+ I+D S+ ++ LS L+ L + R GL L
Sbjct: 466 GVASIAAGCRKLRILNLSYCPNITDASIVSISQLSHLQQLEI--RGCKRVGLEKKLPEFK 523
Query: 349 GLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L LDL I D G + + F NL+ L + +++AG+ + +L L + L Q
Sbjct: 524 NLVELDLKHCGIGDRGMTSIVYCFPNLQQLNLSYCRISNAGLVMLGNLRCLQNVKLVQ-- 581
Query: 408 NLTDKTLELISG 419
+ D ++E+++
Sbjct: 582 -IGDVSIEVLAA 592
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 136/477 (28%), Positives = 204/477 (42%), Gaps = 106/477 (22%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFRRNNAITAQGMKAFA---------- 128
+ ++SLD + CI+I+D L + L+ L SL R T G+ A A
Sbjct: 65 TGIESLDLSSCIKITDEDLALVGELAGTRLRSLGLARMGGFTVAGIVALARNCSALVELD 124
Query: 129 ----------------GLINLVKLDLERCTRIH-GGLVNLK-GLMKLESLNIKWCNCITD 170
L +L KLDL C I GL L G KL+ + +K C I+D
Sbjct: 125 LRCCNSLGDLELAAVCQLGSLRKLDLTGCYMISDAGLGCLAAGCKKLQVVVLKGCVGISD 184
Query: 171 SDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALG 228
+ + L S L ++ +S +++TD G+ L L L +LNL C V A L S
Sbjct: 185 AGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTST-- 242
Query: 229 SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-------NEITDECLVHLKGLTNLES 280
SL L+L+ C+ +++ G SK SL+ L LGF ++IT + L + LT +++
Sbjct: 243 SLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFCSPVKKRSQITGQLLEAVGKLTQIQT 301
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFT---GISDG----------SLRKL------- 320
L L C I +GL G L+ +LS + G++D +LRKL
Sbjct: 302 LKLAGCEIAGDGL-RFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKNLRKLDLTCCLD 360
Query: 321 -------------AGLSSLK-----------------------SLNLDARQITDTGLAAL 344
AGL SLK L++ I D GL +
Sbjct: 361 LTEITAYNIARSSAGLVSLKIEACRILTENNIPLLMERCSCLEELDVTDCNIDDAGLECI 420
Query: 345 TSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGVKHIK-DLSSLTLL 401
L L L +++D+G ++ RN +L L++ G + DAGV I L +L
Sbjct: 421 AKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDAGVASIAAGCRKLRIL 480
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKV 457
NLS N+TD ++ IS L+ L L + + GL + L KNL L L+ C +
Sbjct: 481 NLSYCPNITDASIVSISQLSHLQQLEIRGCK--RVGLEKKLPEFKNLVELDLKHCGI 535
>gi|18413537|emb|CAD21866.1| hypothetical leucine-rich repeat protein 1 (LRRP1) [Trypanosoma
brucei]
Length = 1393
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 134/504 (26%), Positives = 207/504 (41%), Gaps = 76/504 (15%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H +C NL +LD +FC
Sbjct: 555 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRDISHFSNCKNLITLDLSFC 612
Query: 92 IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G++ +I
Sbjct: 613 NKLLD-----VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIV 667
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ V+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 668 SLGNGNSFVRLSLENC-KGFGDVAPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVL 725
Query: 186 QISCSKVTD------------------------SGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ ++V D + I+ + L L LN++ C +
Sbjct: 726 DLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISAIASLTALEELNIDNCCNVTSGW 785
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLES 280
+ L L L+ + +D+ S+ SL LNL F +ITD + L +T LE
Sbjct: 786 NVFGTLHQLRVATLSNTRTNDENIRHVSECKSLNTLNLAFCKDITD--VTALSKITMLEE 843
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQIT 337
LNLD C +G+ L L +++ + DG ++ L SL LNL+ R
Sbjct: 844 LNLDCCHNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLE-RSRG 902
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKHIKD 394
+ AL+++ L L L AR + +F L L + TD K+I +
Sbjct: 903 RISVKALSNVATLEELVLDHAR----KVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISE 958
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
SL LNLS +TD ++ +++N N G L L LR L
Sbjct: 959 SKSLRSLNLSHCKWVTDISVLSSLLTLEELNVNCCNG--IRKGWESLGKLPLLRVAILSD 1016
Query: 455 CKVTANDIKRLQS-RDLPNLVSFR 477
K+TA DI L S + L L FR
Sbjct: 1017 TKITAKDIACLSSCKKLVKLKFFR 1040
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 109/419 (26%), Positives = 184/419 (43%), Gaps = 56/419 (13%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL L+L + +
Sbjct: 189 IDNNDARHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTNIDDSCVRRICA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+KL L++ CN ITD+ P+S L+ L+ L +S +T GI L L +L +L+L G
Sbjct: 247 CVKLSKLSVSECNNITDA--TPISQLSALEELNLSNCHIT-KGIGTLGMLLRLRILDLSG 303
Query: 214 CPVTAACLDSLSALGSLFYLNLN-RCQLSD---------------DGCEKFSK------- 250
PV CL L GSL LN++ R QL+D +GC + ++
Sbjct: 304 VPVEDNCLKDLCDCGSLERLNISYRIQLTDINPLSNATAIEELNLNGCRRITRGIGVVWA 363
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF 309
+ L+VL++ +++ L + L ++LD+C G GD L L+ + LE +N+
Sbjct: 364 LPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQK 421
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITD---TGLAA--------LTSLTGLTHLD---- 354
+ L L L+ LN+ I+ TG+ A + S+TGL++++
Sbjct: 422 CADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSNVEALAN 481
Query: 355 --------LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L G D+G L N L+ L++ G + ++ + ++ LNLS
Sbjct: 482 ILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHC 541
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T+ + IS L L LN+SN +AG ++ L+ L L + +T DI
Sbjct: 542 WKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITDRDISHF 598
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 176/406 (43%), Gaps = 24/406 (5%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRN 116
+L + L G D+G+ L + L+ LD + ++ E LR L + T +S +
Sbjct: 484 TLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSG----TNTDNESLRSLCLSQTVVSLNLS 539
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ + + L L +L+L C I+ G ++ L +L + I ITD D+
Sbjct: 540 HCWKMTNVSHISSLEALNELNLSNCFGINAGWEAIEKLQQLH-VAILSNTHITDRDISHF 598
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S NL +L +S C+K+ D + L + L LNL+ C L L L L LN+
Sbjct: 599 SNCKNLITLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNI 656
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNL----GFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
QL D S L+L GF ++ L L LE LNL C
Sbjct: 657 KGVQLEDSVIVSLGNGNSFVRLSLENCKGFGDVAP-----LSNLVTLEELNLHYCDKVTS 711
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-DARQITDTGLAALTSLTG 349
G+ L L L ++L T + D SL + SS L SLNL + ++IT ++A+ SLT
Sbjct: 712 GMGTLGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKIT--SISAIASLTA 769
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
L L++ SG LR + D ++H+ + SL LNL+ ++
Sbjct: 770 LEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENIRHVSECKSLNTLNLAFCKDI 829
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
TD T +S +T L LN+ G+ L L R L+++ C
Sbjct: 830 TDVT--ALSKITMLEELNLDCCHNIRKGIETLGTLPKARILSMKEC 873
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 147/325 (45%), Gaps = 36/325 (11%)
Query: 168 ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
IT D+ LS L L+ C K++D + Y +Q L L + C L++L
Sbjct: 1019 ITAKDIACLSSCKKLVKLKFFRCKKLSDVTVVY--KIQSLEELIVTSCSDGLKGLNALGT 1076
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
L L + +L + SD E SL L++ E+TD + L +T+LE L+L
Sbjct: 1077 LPRLRFHHLRNVRGSDISVESIGTSKSLVRLHIEVGEELTD--ITPLSNITSLEELSLRD 1134
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAAL 344
EG+ L L L+S++L + ISD +L + S+ SLNLD+ ++TD ++ +
Sbjct: 1135 YRKPPEGVGTLGKLPRLKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTD--ISHI 1192
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 402
++LT L L+L G SG L LR +LE D G +I L LN
Sbjct: 1193 SNLTALEELNLGGCYYITSGWKALSELPRLRVLNLEFTRVTTRDGGY-YISRCKYLVTLN 1251
Query: 403 LSQNCNLTD-------KTL---------ELISGLTGLVS------LNVSNSRITSAGLRH 440
L + C++TD KTL EL G + L + LN+ S IT LR
Sbjct: 1252 L-ELCDMTDASCLANIKTLEELHIGGCDELTQGFSALFTLPQLRILNLICSLITDEDLRE 1310
Query: 441 LKPLKNLRSLTLESCKVTANDIKRL 465
++P + L L C V NDI L
Sbjct: 1311 IQPPHTIEELNLSYC-VELNDITPL 1334
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 130/521 (24%), Positives = 210/521 (40%), Gaps = 124/521 (23%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGL 105
+DLSG V D+ L L DC +L+ L+ ++ IQ++D +E L RG+
Sbjct: 299 LDLSGVPVEDNCLKDLCDCGSLERLNISYRIQLTDINPLSNATAIEELNLNGCRRITRGI 358
Query: 106 SNLTSLSFRR----------------------------NNAITAQGMKAFAGLINLVKLD 137
+ +L R +N M + ++ L +L+
Sbjct: 359 GVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELN 418
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNC-------------ITDSDMKPLSGLTNLKS 184
+++C I G+ L L L LNIK + + +M+ ++GL+N+++
Sbjct: 419 IQKCADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSNVEA 478
Query: 185 LQ--ISCSKVT-------DSGIAYLKGLQKLTLLNLEGCPVTAACLDSL----------- 224
L ++ K++ D+GI L L +L +L+L G L SL
Sbjct: 479 LANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNL 538
Query: 225 ------------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
S+L +L LNL+ C + G E K+ L V L ITD + H
Sbjct: 539 SHCWKMTNVSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITDRDISHF 598
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTN---LESINL-SFTGISDGSLRKLAGLSSLKS 328
NL +L+L C L+++T L+N LE +NL S + I G L L L L
Sbjct: 599 SNCKNLITLDLSFCN----KLLDVTALSNITTLEELNLDSCSNIRKG-LSVLGELPRLCV 653
Query: 329 LNLDARQITDT-----------------------GLAALTSLTGLTHLDLFGARITDSGA 365
LN+ Q+ D+ +A L++L L L+L SG
Sbjct: 654 LNIKGVQLEDSVIVSLGNGNSFVRLSLENCKGFGDVAPLSNLVTLEELNLHYCDKVTSGM 713
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS-LTLLNLSQNCNLTDKTLELISGLTGLV 424
L LR L++ + D +++I SS L LNLS +T ++ I+ LT L
Sbjct: 714 GTLGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKIT--SISAIASLTALE 771
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
LN+ N ++G L LR TL + + +I+ +
Sbjct: 772 ELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENIRHV 812
>gi|195585785|ref|XP_002082659.1| GD25110 [Drosophila simulans]
gi|194194668|gb|EDX08244.1| GD25110 [Drosophila simulans]
Length = 522
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 163/324 (50%), Gaps = 42/324 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
RG+ + LS RR+ G+ A L NL G + +N+
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSL-------------------NLSGCFNVADMNL 252
Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPVTA- 218
ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C +
Sbjct: 253 GHAFSITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISD 312
Query: 219 ------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDE 267
A +A G+L YL L CQ LSD+ ++ + SLK +NL F +TD
Sbjct: 313 QGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDS 372
Query: 268 CLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLA-GL 323
L HL + LE LNL SC I D G+ LT G + + S+++SF ISD +L +A GL
Sbjct: 373 GLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGL 432
Query: 324 SSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEIC 380
L+SL+L+ QITD G+ + +L L +L++ +RITD G L + NL+++++
Sbjct: 433 YRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLY 492
Query: 381 G-GGLTDAGVKHIKDLSSLTLLNL 403
G L+ G+ I L L LNL
Sbjct: 493 GCTQLSSKGIDIIMKLPKLQKLNL 516
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 149/285 (52%), Gaps = 29/285 (10%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCI 92
D+ LG + D + IA +L +++L G ++T++GL+ + L+ L+ C
Sbjct: 249 DMNLGHAFSITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCW 308
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-- 150
ISD G+ HL G S T+ G + L L L+ C R+ +
Sbjct: 309 HISDQGIGHLAGFSRETA-----------------EGNLQLEYLGLQDCQRLSDEALGHI 351
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTL 208
+GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL +G +
Sbjct: 352 AQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINS 411
Query: 209 LNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGF-NEI 264
L++ C ++ L ++ L L L+LN+CQ++D G K +K + L+ LN+G + I
Sbjct: 412 LDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRI 471
Query: 265 TDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINL 307
TD+ L L + LTNL++++L C + +G+ + L L+ +NL
Sbjct: 472 TDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 516
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 24/233 (10%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLT-GLTNLESINLS-F 309
SLK L LG +T ++L G N+ +NL + I D L + L NLE++ L
Sbjct: 225 SLKDLVLGVPALTS---LNLSGCFNVADMNLGHAFSITDTSLGRIAQHLRNLETLELGGC 281
Query: 310 TGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHLDLFG----A 358
I++ L +A GL LK LNL + I+D G+ L + G L+ G
Sbjct: 282 CNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQ 341
Query: 359 RITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
R++D ++ + +L+S L C +TD+G+KH+ + L LNL N++D +
Sbjct: 342 RLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIGMA 400
Query: 416 -LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T + + ++
Sbjct: 401 YLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKI 453
>gi|320169501|gb|EFW46400.1| tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864]
Length = 1286
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 165/369 (44%), Gaps = 7/369 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
+++D GLS L+ L F NN +++ AFAGL L +L L R T I L
Sbjct: 120 RLTDISANAFTGLSALSQL-FLNNNRLSSVPAGAFAGLPALKQLQLNSNRITSISATL-- 176
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L L +++ N IT + LT L L + + +T GL L+ ++
Sbjct: 177 FTGLTALTWLRLEF-NQITSIPASVFTDLTGLSVLVLRSNNITSIPPYAFTGLTALSQID 235
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ +T+ + + L + YL+L Q++ F+ + +L LN+ N +T
Sbjct: 236 VSINLITSIPAFAFAGLTAATYLDLYINQITSISDSAFTGLTALTFLNMDNNRLTSILST 295
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
GLT L+ L L S + GLT L S+ L I+ LS L +L+
Sbjct: 296 TFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQLYDNQITSIPANAFDDLSVLNTLS 355
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L+ IT +A +LT L +L LF RIT A + L SL + +T+
Sbjct: 356 LNDNLITSVPASAFANLTSLQYLSLFNNRITSIAANAFDDLTALGSLHLHTNRITNIPST 415
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
LS+LT L+L N ++T + S L+ + + + +++I+S + +L+ L
Sbjct: 416 AFASLSALTQLHLYNN-SITSISAGTFSSLSAVTYMYMYDNQISSIPANTFTGMTSLKLL 474
Query: 451 TLESCKVTA 459
L ++T+
Sbjct: 475 YLSGNQITS 483
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 158/379 (41%), Gaps = 50/379 (13%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+ N T+ + NN IT+ AF GL L L +++G
Sbjct: 58 GIPNTTTQLYLNNNQITSIPTSAFPGLTVLQIL------QVYG----------------- 94
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N IT +GLT + SLQ++ +++TD GL L+ L L +++ +
Sbjct: 95 --NQITYIPADAFTGLTAVISLQLNNNRLTDISANAFTGLSALSQLFLNNNRLSSVPAGA 152
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L +L L LN +++ F+ + +L L L FN+IT LT L L L
Sbjct: 153 FAGLPALKQLQLNSNRITSISATLFTGLTALTWLRLEFNQITSIPASVFTDLTGLSVLVL 212
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
S I TGLT L I++S I+ AGL++ L+L QIT +A
Sbjct: 213 RSNNITSIPPYAFTGLTALSQIDVSINLITSIPAFAFAGLTAATYLDLYINQITSISDSA 272
Query: 344 LTSLTGLTHLDLFGARITD---------SGAAYLRNFKN---------------LRSLEI 379
T LT LT L++ R+T + YL + N L SL++
Sbjct: 273 FTGLTALTFLNMDNNRLTSILSTTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQL 332
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+T DLS L L+L+ N +T + LT L L++ N+RITS
Sbjct: 333 YDNQITSIPANAFDDLSVLNTLSLNDNL-ITSVPASAFANLTSLQYLSLFNNRITSIAAN 391
Query: 440 HLKPLKNLRSLTLESCKVT 458
L L SL L + ++T
Sbjct: 392 AFDDLTALGSLHLHTNRIT 410
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 146/353 (41%), Gaps = 36/353 (10%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L+FN I L GLS L R+N IT+ AF GL L ++D+
Sbjct: 188 LEFNQITSIPASVFTDLTGLSVLV----LRSNNITSIPPYAFTGLTALSQIDVS------ 237
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
N IT +GLT L + +++T + GL
Sbjct: 238 -------------------INLITSIPAFAFAGLTAATYLDLYINQITSISDSAFTGLTA 278
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT LN++ +T+ + + L +L YL L Q++ F+ + +L L L N+IT
Sbjct: 279 LTFLNMDNNRLTSILSTTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQLYDNQIT 338
Query: 266 DECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
L+ L +L+L+ + NLT L L N T I+ + L
Sbjct: 339 SIPANAFDDLSVLNTLSLNDNLITSVPASAFANLTSLQYLSLFNNRITSIAANAFDDL-- 396
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
++L SL+L +IT+ A SL+ LT L L+ IT A + + + +
Sbjct: 397 -TALGSLHLHTNRITNIPSTAFASLSALTQLHLYNNSITSISAGTFSSLSAVTYMYMYDN 455
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
++ ++SL LL LS N +T + SGLT L L++ +RITS
Sbjct: 456 QISSIPANTFTGMTSLKLLYLSGN-QITSVSANAFSGLTALTQLSLYLNRITS 507
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 137/321 (42%), Gaps = 6/321 (1%)
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N IT+ AF GL L L+++ R T I GL L+ L + W N +T
Sbjct: 263 NQITSISDSAFTGLTALTFLNMDNNRLTSILS--TTFAGLTALQYLYL-WSNQVTSIAPN 319
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+GLT L SLQ+ +++T L L L+L +T+ + + L SL YL+
Sbjct: 320 TFAGLTALNSLQLYDNQITSIPANAFDDLSVLNTLSLNDNLITSVPASAFANLTSLQYLS 379
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L +++ F + +L L+L N IT+ L+ L L+L + I
Sbjct: 380 LFNNRITSIAANAFDDLTALGSLHLHTNRITNIPSTAFASLSALTQLHLYNNSITSISAG 439
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
+ L+ + + + IS G++SLK L L QIT A + LT LT L
Sbjct: 440 TFSSLSAVTYMYMYDNQISSIPANTFTGMTSLKLLYLSGNQITSVSANAFSGLTALTQLS 499
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L+ RIT AA L +L + ++ DL+ L L L N +T
Sbjct: 500 LYLNRITSISAAAFPGLTALLTLSLSDNQISSIPSSAFTDLTLLKFLYLYNN-QITSIAA 558
Query: 415 ELISGLTGLVSLNVSNSRITS 435
GL L +L + N+ ITS
Sbjct: 559 NAFVGLPALSTLLLHNNTITS 579
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 115/276 (41%), Gaps = 8/276 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHG-GLV 149
Q++ GL+ L SL +N IT+ AF L +N + L+ T +
Sbjct: 312 QVTSIAPNTFAGLTALNSLQLY-DNQITSIPANAFDDLSVLNTLSLNDNLITSVPASAFA 370
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
NL L L N N IT LT L SL + +++T+ L LT L
Sbjct: 371 NLTSLQYLSLFN----NRITSIAANAFDDLTALGSLHLHTNRITNIPSTAFASLSALTQL 426
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+L +T+ + S+L ++ Y+ + Q+S F+ + SLK+L L N+IT
Sbjct: 427 HLYNNSITSISAGTFSSLSAVTYMYMYDNQISSIPANTFTGMTSLKLLYLSGNQITSVSA 486
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
GLT L L+L I GLT L +++LS IS L+ LK L
Sbjct: 487 NAFSGLTALTQLSLYLNRITSISAAAFPGLTALLTLSLSDNQISSIPSSAFTDLTLLKFL 546
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
L QIT A L L+ L L IT + A
Sbjct: 547 YLYNNQITSIAANAFVGLPALSTLLLHNNTITSTFA 582
>gi|300868028|ref|ZP_07112666.1| Small GTP-binding protein (fragment) [Oscillatoria sp. PCC 6506]
gi|300333948|emb|CBN57844.1| Small GTP-binding protein (fragment) [Oscillatoria sp. PCC 6506]
Length = 376
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 165/316 (52%), Gaps = 26/316 (8%)
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+A A L L +LDL+ C ++ + L +L+ LN+ N +T+ + ++ L+ L++
Sbjct: 37 EAIATLTQLQRLDLD-CNQLTKVPEAIASLSQLQILNLS-NNKLTEVP-EAIASLSQLQT 93
Query: 185 LQISCSKVTD--SGIAYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L + +K+T+ IA L LQKL L N L P +++++L L LNLN QL
Sbjct: 94 LNLIYNKLTEVPEAIATLTQLQKLYLSNNQLTQVP------EAIASLSQLQTLNLNFNQL 147
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTG 298
++ E + + L+ LNL +N++T E + LT LE L L++ + E + +LT
Sbjct: 148 TE-VPEAIASLSQLRRLNLSYNQLT-EVPETIASLTQLEWLYLNNNQLRKVPEAIASLTQ 205
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L L + T + + +A LS L+SLNL Q+T+ A+ SLT L L L G
Sbjct: 206 LQRLSLSDNELTAVPEA----IASLSQLRSLNLSNNQLTELP-EAIASLTQLQELYLVGN 260
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
++T+ A + + L+ L + G LT A + I L+ L L+LS N LT E I+
Sbjct: 261 QLTELPEA-IASLTQLQELYLVGNELT-AVPEAIASLTQLQRLSLSDN-ELT-AVPEAIA 316
Query: 419 GLTGLVSLNVSNSRIT 434
LT L L++S +++T
Sbjct: 317 SLTHLQGLDLSYNQLT 332
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 127/272 (46%), Gaps = 40/272 (14%)
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
K CI + + G T L + ++V + IA L LQ+L L C +
Sbjct: 9 KAEQCIEKAQQE---GATKLDLGYMELTEVPE-AIATLTQLQRLDL----DCNQLTKVPE 60
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
++++L L LNL+ +L++ E + + L+ LNL +N++T E + LT L+ L
Sbjct: 61 AIASLSQLQILNLSNNKLTE-VPEAIASLSQLQTLNLIYNKLT-EVPEAIATLTQLQKLY 118
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L + + + L+ L+++NL+F +++ +A LS L+ LNL Q+T+
Sbjct: 119 LSNNQLTQVPEA-IASLSQLQTLNLNFNQLTEVP-EAIASLSQLRRLNLSYNQLTEVP-- 174
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
++ LT L+ YL N LR + + I L+ L L+
Sbjct: 175 --ETIASLTQLEWL----------YLNN-NQLRKVP-----------EAIASLTQLQRLS 210
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
LS N LT E I+ L+ L SLN+SN+++T
Sbjct: 211 LSDN-ELT-AVPEAIASLSQLRSLNLSNNQLT 240
>gi|290983780|ref|XP_002674606.1| predicted protein [Naegleria gruberi]
gi|284088197|gb|EFC41862.1| predicted protein [Naegleria gruberi]
Length = 232
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 1/217 (0%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
L L++GFN + D + LT L LN+ + EG ++ LT L +N++F GI
Sbjct: 4 LTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFNGIG 63
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
D + LS L +L++ + IT+ G +++ L LT LDL RI GA YL
Sbjct: 64 DLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQ 123
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L+ L + + D G K + L +LT LNL++N ++ ++ ++ I L L LN+S +RI
Sbjct: 124 LKKLNLLANYIQDKGAKSVSQLENLTELNLTRN-SIQNEGIKSIIELPLLTKLNISQNRI 182
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 470
++ + + +K L+ L ++ K+L +L
Sbjct: 183 SNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEMEL 219
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 1/207 (0%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+L D G E ++ +L LN+ N ++ E + LT L LN++ GIGD G +
Sbjct: 13 RLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFNGIGDLGAAYIGE 72
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L+ L +++++ I++ R ++ L L L+L+ +I G L L+ L L+L
Sbjct: 73 LSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQLKKLNLLAN 132
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I D GA + +NL L + + + G+K I +L LT LN+SQN ++++ +LIS
Sbjct: 133 YIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN-RISNEEAQLIS 191
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLK 445
G+ L L ++++I + G + L ++
Sbjct: 192 GMKQLKELVATHTQIDNEGAKKLHEME 218
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 2/206 (0%)
Query: 143 RIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
R+H + G L L LN+ N ++ + + LT L L I+ + + D G AY+
Sbjct: 13 RLHDAGAEIIGQLTTLTELNVAE-NFLSHEGAESICKLTQLTVLNINFNGIGDLGAAYIG 71
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
L KLT L++ +T S+S L L L+LN +++ G + ++ LK LNL
Sbjct: 72 ELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQLKKLNLLA 131
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
N I D+ + L NL LNL I +EG+ ++ L L +N+S IS+ + ++
Sbjct: 132 NYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQNRISNEEAQLIS 191
Query: 322 GLSSLKSLNLDARQITDTGLAALTSL 347
G+ LK L QI + G L +
Sbjct: 192 GMKQLKELVATHTQIDNEGAKKLHEM 217
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 1/226 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L L I +++ D+G + L LT LN+ ++ +S+ L L LN+N
Sbjct: 1 MNRLTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D G ++ L L++ N IT+E + L L L+L+ I +G L
Sbjct: 61 GIGDLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGE 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L+ L+ +NL I D + ++ L +L LNL I + G+ ++ L LT L++
Sbjct: 121 LSQLKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN 180
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
RI++ A + K L+ L + + G K + ++ L +L+LS
Sbjct: 181 RISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEM-ELDILDLS 225
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 111/229 (48%), Gaps = 6/229 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L L +G + ++D ++I Q ++L ++++ + ++ G + + L L+ NF
Sbjct: 4 LTKLSIG-FNRLHDAGAEIIG-QLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN- 60
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
I D G ++ LS LT+LS +N IT +G ++ + L L LDL G L
Sbjct: 61 GIGDLGAAYIGELSKLTNLSIA-SNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLG 119
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L +L+ LN+ N I D K +S L NL L ++ + + + GI + L LT LN+
Sbjct: 120 ELSQLKKLNL-LANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNIS 178
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
++ +S + L L Q+ ++G +K ++ L +L+L +
Sbjct: 179 QNRISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEM-ELDILDLSY 226
>gi|440802686|gb|ELR23615.1| leucine rich repeat domain containing protein, partial
[Acanthamoeba castellanii str. Neff]
Length = 431
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 127/419 (30%), Positives = 189/419 (45%), Gaps = 31/419 (7%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++ ++I L + LT +LE F+ ++ L L V D W+DV+ SSL
Sbjct: 29 LPIEVIERILLYLHRTERLTLEALEFFKAFPVETLFLSNIRAVEDTWLDVLKGY-SSLTY 87
Query: 62 VDLSGS-DVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNA 118
+DLS S +TD+GL LK L+SL + C +I+D GL L NL +
Sbjct: 88 LDLSNSYRITDTGLAECLKCMPQLRSLFVDRCKRITDAGLAPLGTHCPNLRRVHVG-GTM 146
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + A L +L + + TR L L+K + W + D +
Sbjct: 147 ITYYALAALNSLEDLQDVSVN-GTRFPDK--ALYTLLKRKEAPDSWA----EEDYGEVRQ 199
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN- 236
LT+ Q S + V D G+ LKGL L LNL P A L +L SL +L+++
Sbjct: 200 LTDF---QASRTLVRDDGVRLLKGLGASLHTLNLAFNPGIADW-SFLGSLASLTHLDISL 255
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VN 295
+D K+ SL +LNL E+TDE + L L+ L SL++ I L
Sbjct: 256 NVGFTDQFAADVGKLSSLTLLNLSKTELTDEGIPALMELSQLRSLDVGKTAITHRALGPG 315
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS--LTGLTHL 353
L L NL +++L +T + R L L L S TGL L LT L
Sbjct: 316 LAKLPNLTALSLPYTNVGGKFSRYLTVLHRLTSFK-------TTGLLELAKGRYPHLTAL 368
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT---LLNLSQNCNL 409
D+ ++TDSG A++ LR+ + +T+ G + ++ L+ L L+N SQ L
Sbjct: 369 DVGCDQLTDSGLAHIGELAALRNFNMWNTKVTNQGAELVQQLTGLVLDDLMNTSQGTYL 427
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 157/351 (44%), Gaps = 48/351 (13%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN-LKGLMKLESLNIKWCNCITDSDMK 174
A+ + G +L LDL RI GL LK + +L SL + C ITD+ +
Sbjct: 69 RAVEDTWLDVLKGYSSLTYLDLSNSYRITDTGLAECLKCMPQLRSLFVDRCKRITDAGLA 128
Query: 175 PL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKL----------------TLLNLEGCPVT 217
PL + NL+ + + + +T +A L L+ L TLL + P +
Sbjct: 129 PLGTHCPNLRRVHVGGTMITYYALAALNSLEDLQDVSVNGTRFPDKALYTLLKRKEAPDS 188
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNE-ITDECLV-HLKG 274
A D + L +R + DDG +G SL LNL FN I D + L
Sbjct: 189 WAEED-YGEVRQLTDFQASRTLVRDDGVRLLKGLGASLHTLNLAFNPGIADWSFLGSLAS 247
Query: 275 LTNLE-SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
LT+L+ SLN+ G D+ ++ L++L +NLS T ++D + L LS L+SL++
Sbjct: 248 LTHLDISLNV---GFTDQFAADVGKLSSLTLLNLSKTELTDEGIPALMELSQLRSLDVGK 304
Query: 334 RQITDTGLAA-LTSLTGLTHLDLFGARITDSGAAYLR-------------------NFKN 373
IT L L L LT L L + + YL + +
Sbjct: 305 TAITHRALGPGLAKLPNLTALSLPYTNVGGKFSRYLTVLHRLTSFKTTGLLELAKGRYPH 364
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L +L++ LTD+G+ HI +L++L N+ N +T++ EL+ LTGLV
Sbjct: 365 LTALDVGCDQLTDSGLAHIGELAALRNFNM-WNTKVTNQGAELVQQLTGLV 414
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 82/349 (23%), Positives = 148/349 (42%), Gaps = 60/349 (17%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
+I + L L R R+ + +E+L + + D+ + L G ++L L +S
Sbjct: 33 VIERILLYLHRTERLTLEALEFFKAFPVETLFLSNIRAVEDTWLDVLKGYSSLTYLDLSN 92
Query: 190 S-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEK 247
S ++TD+G+A CL + L SLF ++RC+ ++D G
Sbjct: 93 SYRITDTGLA--------------------ECLKCMPQLRSLF---VDRCKRITDAGLAP 129
Query: 248 F-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN 306
+ +L+ +++G IT L L L +L+ ++++ D+ L L L E+ +
Sbjct: 130 LGTHCPNLRRVHVGGTMITYYALAALNSLEDLQDVSVNGTRFPDKALYTL--LKRKEAPD 187
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
S+ G +R+L + ++L + D G+ L L GA + A
Sbjct: 188 -SWAEEDYGEVRQLTDFQASRTL------VRDDGVRLLKGL---------GASLHTLNLA 231
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
+ G+ D + L+SLT L++S N TD+ + L+ L L
Sbjct: 232 F-------------NPGIADWSF--LGSLASLTHLDISLNVGFTDQFAADVGKLSSLTLL 276
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
N+S + +T G+ L L LRSL + +T + ++ LPNL +
Sbjct: 277 NLSKTELTDEGIPALMELSQLRSLDVGKTAITHRALGPGLAK-LPNLTA 324
>gi|449269519|gb|EMC80282.1| F-box/LRR-repeat protein 14, partial [Columba livia]
Length = 344
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 167/338 (49%), Gaps = 53/338 (15%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---------CSKVTDSGIA--- 198
++G+ +ESLN+ C +TD+ GL + +IS C ++TDS +
Sbjct: 19 IQGMADIESLNLSGCYNLTDN------GLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA 72
Query: 199 -YLKGLQKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSL 254
YLKGL+ +L L GC L L L LNL C+ LSD G IG L
Sbjct: 73 QYLKGLE---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVG------IGHL 123
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG- 311
+ E G LE L L C + D L +L GL L +NLSF G
Sbjct: 124 AGMTRSAAE----------GCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGG 173
Query: 312 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAY 367
ISD L L+ +SSL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY
Sbjct: 174 ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAY 232
Query: 368 L-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLV 424
+ + LRSL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L
Sbjct: 233 IAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 292
Query: 425 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+++ +RIT GL + L L+ L L ++T ++
Sbjct: 293 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWEMTESE 330
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM ++ L+L C + G + + L S
Sbjct: 1 RGIRRVQILSLRRSLSYVIQGMA------DIESLNLSGCYNLTDNGLGHAFVAEISSLRS 54
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 55 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 112
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ LSD + ++ +G L+ LNL F
Sbjct: 113 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCG 172
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFT-GISDGSLRK 319
I+D L+HL +++L SLNL SC I D G+++L G L +++SF + D SL
Sbjct: 173 GISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 232
Query: 320 LA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLR 375
+A GL L+SL+L + I+D G+ + + GL L++ RITD G + + L
Sbjct: 233 IAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 292
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
+++ G +T G++ I L L +LNL
Sbjct: 293 GIDLYGCTRITKRGLERITQLPCLKVLNL 321
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 169/327 (51%), Gaps = 48/327 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ ++++SL+ + C ++D GL H + +S+L SL+ IT + A + L
Sbjct: 19 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 78
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 79 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 138
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K++D + +L +GL +L LNL C ++ A L LS + SL LNL C
Sbjct: 139 QLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDN 198
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L SL+L SC I DEG+
Sbjct: 199 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINR 257
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 258 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 294
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEI 379
DL+G RIT G + L+ L +
Sbjct: 295 DLYGCTRITKRGLERITQLPCLKVLNL 321
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 49/201 (24%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAF 127
++D+GL+HL S+L+SL+ C ISD G+ HL G L+ L + + Q +
Sbjct: 174 ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 233
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A +GL L SL++ C+ + + + + L++L I
Sbjct: 234 A-----------------------QGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNI 270
Query: 188 -SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
C ++TD G+ + + L +LT ++L GC +++ G
Sbjct: 271 GQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRGL 307
Query: 246 EKFSKIGSLKVLNLGFNEITD 266
E+ +++ LKVLNLG E+T+
Sbjct: 308 ERITQLPCLKVLNLGLWEMTE 328
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 17/160 (10%)
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RN 370
GL LKSLNL + R ++D G+ L +T GL L L +++D +L R
Sbjct: 100 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARG 159
Query: 371 FKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLN 427
LR L + CGG ++DAG+ H+ +SSL LNL N++D + L G L L+
Sbjct: 160 LGRLRQLNLSFCGG-ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 218
Query: 428 VSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
VS ++ L ++ + L LRSL+L SC ++ I R+
Sbjct: 219 VSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRM 258
>gi|21674346|ref|NP_662411.1| Rab family protein [Chlorobium tepidum TLS]
gi|21647522|gb|AAM72753.1| Rab family protein [Chlorobium tepidum TLS]
Length = 1102
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 107/319 (33%), Positives = 157/319 (49%), Gaps = 30/319 (9%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+ ++ L L SL++ W SD+ PL L +L LQ+S +++TD IA L L+ LT
Sbjct: 97 ITDIAPLASLNSLSMLWLFGNKISDIAPLESLKSLTELQLSSNQITD--IAPLASLKSLT 154
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+L G ++ L +L SL L+L+ Q++D + + SL L+L N+I+D
Sbjct: 155 ELSLSGNNISDIA--PLESLKSLTELSLSSNQITD--IAPLASLKSLTELSLSSNQISD- 209
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
+ L+ L +L L L I D + L L +L + LS I+D + LA L SL
Sbjct: 210 -IAPLESLKSLTELQLSRNQISD--IAPLESLKSLTELQLSSNQITD--IAPLASLKSLT 264
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L L QI+D +A L SL L+ L L G +ITD A L + +L LE+ +TD
Sbjct: 265 ELQLSRNQISD--IAPLESLNSLSKLWLNGNQITD--IAPLASLNSLTELELSSNQITD- 319
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG-LRHLKPLKN 446
+ + L SL+ L LS N IS + L SL + S+ + + PL +
Sbjct: 320 -IAPLASLKSLSTLWLSSNQ---------ISDIAPLASLESLSELSLSSNQISDISPLAS 369
Query: 447 LRSLTLESCKVTANDIKRL 465
L SLT V N IKRL
Sbjct: 370 LNSLT--GFDVRRNPIKRL 386
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 139/282 (49%), Gaps = 33/282 (11%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++TD I+ L L L++L L+ +T L++L SL L L ++SD
Sbjct: 73 NQITD--ISPLASLNSLSMLWLDRNQITDIA--PLASLNSLSMLWLFGNKISD--IAPLE 126
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
+ SL L L N+ITD + L L +L L+L I D + L L +L ++LS
Sbjct: 127 SLKSLTELQLSSNQITD--IAPLASLKSLTELSLSGNNISD--IAPLESLKSLTELSLSS 182
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
I+D + LA L SL L+L + QI+D +A L SL LT L L +I+D A L
Sbjct: 183 NQITD--IAPLASLKSLTELSLSSNQISD--IAPLESLKSLTELQLSRNQISD--IAPLE 236
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN-V 428
+ K+L L++ +TD + + L SLT L LS+N IS + L SLN +
Sbjct: 237 SLKSLTELQLSSNQITD--IAPLASLKSLTELQLSRNQ---------ISDIAPLESLNSL 285
Query: 429 SNSRITSAGLRHLKPLKNLRSLT---LESCKVTANDIKRLQS 467
S + + + PL +L SLT L S ++T DI L S
Sbjct: 286 SKLWLNGNQITDIAPLASLNSLTELELSSNQIT--DIAPLAS 325
>gi|115504803|ref|XP_001219194.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|83642676|emb|CAJ16709.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 735
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 179/409 (43%), Gaps = 11/409 (2%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLSG+ +++ L ++ + L+ LD +FC + D + + + L L+ + +IT
Sbjct: 329 LDLSGTSISNESLWNISESKLLRRLDLSFCGGVKD--ISPISDIVTLEELNLKGCTSIT- 385
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+G+ L+NL L++ G L N+ + L L++ C + D + +
Sbjct: 386 EGVDKLGNLVNLHILNMSNTPLQSGFLYNISSIESLVELDLSSCWGVASLDSSVQTAVRM 445
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QL 240
K + GI L L KL LLN+ PVT CL L SL +LNL+ C L
Sbjct: 446 RKGSYPLARHI--EGINALGRLPKLRLLNMSSTPVTDECLHGLQMCKSLVWLNLSLCANL 503
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
+D S + +L+ ++LG L+ L L L+L + I D L ++T
Sbjct: 504 TD--VSPLSSVKTLEEVDLGCCGNLKWGAGSLRRLPQLRILDLKNTVITDHCLGDVTYGG 561
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGAR 359
+ S L G++D S + + + LD T +A LTS+T L L G R
Sbjct: 562 GVVSRMLGRCGMADLSFSRWSIRRGGNLVRLDLSSCWGLTDIAHLTSITTLEELRFTGCR 621
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
G L L L++ G +TD ++ + SL LN+S NLTD + +S
Sbjct: 622 NLKDGVDALGQLPVLHLLDLSGTSITDDSLQGLSTCRSLVTLNISSCANLTD--VSPLSR 679
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 468
++ L LN+ S+ G+ L L L + L + + L+ R
Sbjct: 680 ISSLEELNLQKSKHIRRGIDELVSLPRLYLVYLCRADFSRGVAEELEKR 728
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 152/354 (42%), Gaps = 62/354 (17%)
Query: 159 SLN-IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN---LEGC 214
SLN + + C D+ LSG + L L++ D +++ K L++L L L
Sbjct: 91 SLNKLHFIECSGSCDLGMLSGHSFLSELRVD----VDGEVSHYKALRELPSLRTLWLRNS 146
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+T + + +L L L R L+ E +++ L+ L+L + D+CL +
Sbjct: 147 NMTLTDFFHVGEVDTLESLTL-RGALNFKCLEAVARLPRLRALDLSETLVNDKCLHAISA 205
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF------------------------- 309
L+ L L SC + + LT + +LE +NLS
Sbjct: 206 CKTLQQLGLSSCKRLRD-VSPLTQIASLEELNLSHCENLKEVGALYRLSHLFRLDLRGVH 264
Query: 310 ------------TGISD------GSLRKLAGLSSLKSL-NLDA---RQITDTGLAALTSL 347
TG+++ L +A LS+L+SL +LD + + TG L L
Sbjct: 265 LTYRVVYSLSKCTGLTELYVSSCEGLSGVAWLSNLESLGDLDVQWRKNLKHTG-DVLACL 323
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQN 406
L LDL G I++ + K LR L++ GG+ D + I D+ +L LNL +
Sbjct: 324 PLLRVLDLSGTSISNESLWNISESKLLRRLDLSFCGGVKD--ISPISDIVTLEELNL-KG 380
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
C + ++ + L L LN+SN+ + S L ++ +++L L L SC A+
Sbjct: 381 CTSITEGVDKLGNLVNLHILNMSNTPLQSGFLYNISSIESLVELDLSSCWGVAS 434
>gi|224144082|ref|XP_002325179.1| predicted protein [Populus trichocarpa]
gi|222866613|gb|EEF03744.1| predicted protein [Populus trichocarpa]
Length = 66
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 52/58 (89%)
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
+GLT LVSLNVSNS IT GLR+LKPLKNLRS++LESCKVTA+ IK+LQS +LPNLVS
Sbjct: 9 TGLTELVSLNVSNSLITIDGLRYLKPLKNLRSVSLESCKVTASGIKKLQSTELPNLVS 66
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+GLT L SL +S S +T G+ YLK L+ L ++LE C VTA+ + L +
Sbjct: 9 TGLTELVSLNVSNSLITIDGLRYLKPLKNLRSVSLESCKVTASGIKKLQS 58
>gi|390362171|ref|XP_003730087.1| PREDICTED: F-box/LRR-repeat protein 14-like [Strongylocentrotus
purpuratus]
Length = 478
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 154/298 (51%), Gaps = 24/298 (8%)
Query: 82 NLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDL 138
N+QSL+ + C ++D GL H + + LT L+ IT + + L L LDL
Sbjct: 175 NIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSLWRIEQYLKQLEVLDL 234
Query: 139 ERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-----NLKSLQI---- 187
C+ I G LV +GL KL+ LN++ C I+D + L+G++ + L++
Sbjct: 235 AGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGTRDLELLVLQ 294
Query: 188 SCSKVTDSGIAYL-KGLQKLTLLNLE-GCPVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
C K++D+ + + KGL KL LNL C +T + SLS + SL LNL C +SD G
Sbjct: 295 DCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLSRMQSLRELNLRSCDNISDIG 354
Query: 245 CEKFSKI-GSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-GLT 300
++ G L+ F ++I D L H+ +G+ NL++++L SC I DEG+ L L
Sbjct: 355 LAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITDEGVGRLVRSLH 414
Query: 301 NLESINL-SFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 355
N+ ++N+ ++D L +A L LK ++L IT GL + L LT L+L
Sbjct: 415 NMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYGCTMITTVGLERIMQLPCLTVLNL 472
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 172/368 (46%), Gaps = 65/368 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL--KGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + GL + K + L
Sbjct: 152 RGIKRVQILSLRRSLSHVMQGMP------NIQSLNLSGCYNLTDVGLSHAFSKEIPTLTV 205
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYL-KGLQKLTLLNLEGC 214
LN+ C ITD+ + + LK L++ CS +T++G+ + +GL KL LNL C
Sbjct: 206 LNLSLCKQITDTSLWRIE--QYLKQLEVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSC 263
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+SD G IG L +++ +G
Sbjct: 264 R-----------------------HISDVG------IGYLAGVSVEAA----------RG 284
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNL 331
+LE L L C + D L+++ GL L S+NLSF GI+D + L+ + SL+ LNL
Sbjct: 285 TRDLELLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLSRMQSLRELNL 344
Query: 332 DA-RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+D GLA L G LD F +I D+ +++ + NL+++ + +TD
Sbjct: 345 RSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITDE 404
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
GV + ++ L ++T LN+ Q +TDK L LI+ L L +++ + IT+ GL + L
Sbjct: 405 GVGRLVRSLHNMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYGCTMITTVGLERIMQL 464
Query: 445 KNLRSLTL 452
L L L
Sbjct: 465 PCLTVLNL 472
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 134/256 (52%), Gaps = 32/256 (12%)
Query: 62 VDLSG-SDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+DL+G S++T++GL+ + + L+ L+ C ISD G+ +L G+S
Sbjct: 232 LDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVS------------- 278
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
++A G +L L L+ C ++ L+++ KGL KL SLN+ +C ITD+ M LS
Sbjct: 279 ----VEAARGTRDLELLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLS 334
Query: 178 GLTNLKSLQI-SCSKVTDSGIAYLKGL-QKLTLLNLEGC-PVTAACLDSLS-ALGSLFYL 233
+ +L+ L + SC ++D G+A+L L+ C + A L +S + +L +
Sbjct: 335 RMQSLRELNLRSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNV 394
Query: 234 NLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHL-KGLTNLESLNLDSC---- 286
+L+ C ++D+G + + + ++ LN+G +TD+ L + + L L+ ++L C
Sbjct: 395 SLSSCHITDEGVGRLVRSLHNMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYGCTMIT 454
Query: 287 GIGDEGLVNLTGLTNL 302
+G E ++ L LT L
Sbjct: 455 TVGLERIMQLPCLTVL 470
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 125/255 (49%), Gaps = 25/255 (9%)
Query: 233 LNLNRC-QLSDDG-CEKFSK-IGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNLDSCG 287
LNL+ C L+D G FSK I +L VLNL +ITD L ++ L LE L+L C
Sbjct: 179 LNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSLWRIEQYLKQLEVLDLAGCS 238
Query: 288 -IGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
I + GL+ + GL L+ +NL S ISD + LAG+S AR D L L
Sbjct: 239 NITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEA-----ARGTRDLELLVL 293
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
L+ L S A L ++L +L C G +TD G+ + + SL LNL
Sbjct: 294 QDCQKLSDTALM------SIAKGLHKLRSL-NLSFCCG-ITDTGMISLSRMQSLRELNLR 345
Query: 405 QNCNLTDKTLELISGLTG-LVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAND 461
N++D L ++ G +L+ S +I A L H+ + + NL++++L SC +T
Sbjct: 346 SCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITDEG 405
Query: 462 IKRLQSRDLPNLVSF 476
+ RL R L N+ +
Sbjct: 406 VGRL-VRSLHNMTTL 419
>gi|355785801|gb|EHH65984.1| F-box and leucine-rich repeat protein 14 [Macaca fascicularis]
Length = 330
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 174/347 (50%), Gaps = 43/347 (12%)
Query: 154 LMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGLQKL 206
+ +ESLN+ C +TD+ + + + +L++L +S C ++TDS + YLKGL+
Sbjct: 1 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLE-- 58
Query: 207 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE 263
+L L GC L L L LNL C+ LSD G IG L + E
Sbjct: 59 -VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVG------IGHLAGMTRSAAE 111
Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKL 320
G LE L L C + D L +++ GLT L +NLSF G ISD L L
Sbjct: 112 ----------GCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHL 161
Query: 321 AGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLR 375
+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+
Sbjct: 162 SHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLK 220
Query: 376 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SR 432
SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +R
Sbjct: 221 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTR 280
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
IT GL + L L+ L L ++T D ++ D L + R
Sbjct: 281 ITKRGLERITQLPCLKVLNLGLWQMT--DSEKEARGDFSPLFTVRTR 325
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 177/342 (51%), Gaps = 48/342 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
+N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L L+
Sbjct: 2 ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 61
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+ L +
Sbjct: 62 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 121
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C +SD
Sbjct: 122 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 181
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGL 299
G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 182 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM--- 237
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG 357
+R++ G L++LN+ +ITD GL + L+ LT +DL+G
Sbjct: 238 -----------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 277
Query: 358 -ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
RIT G + L+ L + +TD+ + D S L
Sbjct: 278 CTRITKRGLERITQLPCLKVLNLGLWQMTDSEKEARGDFSPL 319
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 127 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 186
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 187 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 246
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 247 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 283
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 284 RGLERITQLPCLKVLNLGLWQMTD 307
>gi|432862145|ref|XP_004069745.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryzias latipes]
Length = 403
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 178/377 (47%), Gaps = 59/377 (15%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDNGL--------GHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL++L + CS +T++G+ + GL KL LNL C
Sbjct: 123 RLLNLSLCKQITDSSLGRIAQYLKNLEALDLGGCSNITNTGLLLIAWGLHKLKSLNLRSC 182
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
+S +G + R + +GC K+ +L+ ++TD L H+ K
Sbjct: 183 R-------HVSDVGIGHISGMTRS--AAEGCLSLEKL-TLQ----DCQKLTDLSLKHVSK 228
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 331
GL L+ LNL CG I D G+++L+ + +L S+NL S ISD + LA + SL+ L
Sbjct: 229 GLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLRSCDNISDTGIMHLA-MGSLQLSGL 287
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV- 389
D F +I D AY+ + L+SL +C ++D G+
Sbjct: 288 DVS---------------------FCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDDGIN 326
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNL 447
+ ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL + L L
Sbjct: 327 RMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCL 386
Query: 448 RSLTLESCKVTANDIKR 464
+ L L ++T ++ R
Sbjct: 387 KVLNLGLWQMTDSERVR 403
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 169/330 (51%), Gaps = 48/330 (14%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
+++SL+ C ++D GL H ++ + +L L+ IT + A + NL LDL
Sbjct: 94 HIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITDSSLGRIAQYLKNLEALDL 153
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQIS 188
C+ I G L+ GL KL+SLN++ C ++D + +SG+T +L+ L +
Sbjct: 154 GGCSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHISGMTRSAAEGCLSLEKLTLQ 213
Query: 189 -CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
C K+TD + ++ KGL KL +LNL C ++ A + LS + L LNL C +SD G
Sbjct: 214 DCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLRSCDNISDTG 273
Query: 245 CEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLT 300
+ +GSL++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G
Sbjct: 274 IMHLA-MGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDDG-------- 324
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG- 357
IN R + + LK+LN+ +ITD GL + LT LT +DL+G
Sbjct: 325 ----IN-----------RMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGC 369
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
+IT G + L+ L + +TD+
Sbjct: 370 TKITKRGLERITQLPCLKVLNLGLWQMTDS 399
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHVSKGLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + L +LT ++L GC +++
Sbjct: 338 LNIGQCVRITDKGLELIADHLTQLTGIDLYGCT-----------------------KITK 374
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 375 RGLERITQLPCLKVLNLGLWQMTD 398
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 133/263 (50%), Gaps = 44/263 (16%)
Query: 233 LNLNRC-QLSDDGC-EKFSK-IGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG 287
LNL C L+D+G F + I SL++LNL +ITD L + + L NLE+L+L C
Sbjct: 98 LNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITDSSLGRIAQYLKNLEALDLGGCS 157
Query: 288 -IGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLAGLS--------SLKSLNL-DARQ 335
I + GL+ + GL L+S+NL S +SD + ++G++ SL+ L L D ++
Sbjct: 158 NITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHISGMTRSAAEGCLSLEKLTLQDCQK 217
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+TD L ++ GL L + +L CGG ++DAG+ H+ +
Sbjct: 218 LTDLSLKHVSK--GLNKLKVL-------------------NLSFCGG-ISDAGMIHLSHM 255
Query: 396 SSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTL 452
+ L LNL N++D + L G L L+VS +I L ++ + L L+SL+L
Sbjct: 256 AHLCSLNLRSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSL 315
Query: 453 ESCKVTANDIKRL--QSRDLPNL 473
SC ++ + I R+ Q +L L
Sbjct: 316 CSCHISDDGINRMVRQMHELKTL 338
>gi|395538856|ref|XP_003771390.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Sarcophilus
harrisii]
Length = 341
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 179/381 (46%), Gaps = 67/381 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + +
Sbjct: 9 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAVVQEIGSPRA 62
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL GC
Sbjct: 63 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGC 120
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
LSD G IG L + E G
Sbjct: 121 R-----------------------HLSDVG------IGHLAGMTRSAAE----------G 141
Query: 275 LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
LE L L C + D L +++ GL L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 142 CLGLEQLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNL 201
Query: 332 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 386
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L SL C ++D
Sbjct: 202 RSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISD 260
Query: 387 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 261 DGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 320
Query: 444 LKNLRSLTLESCKVTANDIKR 464
L L+ L L ++T ++ R
Sbjct: 321 LPCLKVLNLGLWQMTESEKVR 341
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 167/327 (51%), Gaps = 48/327 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + + +L+ IT + A + L
Sbjct: 27 IQGMANIESLNLSGCYNLTDNGLGHAVVQEIGSPRALNLSLCKQITDSSLGRIAQYLKGL 86
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 87 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGCRHLSDVGIGHLAGMTRSAAEGCLGLE 146
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 147 QLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 206
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L SL+ C I D+G+
Sbjct: 207 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISDDGINR 265
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 353
+ +R++ G L++LN+ +ITD GL + L+ LT +
Sbjct: 266 M--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGI 302
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEI 379
DL+G RIT G + L+ L +
Sbjct: 303 DLYGCTRITKRGLERITQLPCLKVLNL 329
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 156 LTDLSLKHISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 215
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L SL+ C+ D + + + L++
Sbjct: 216 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISDDGINRMVRQMHGLRT 275
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 276 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 312
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++T+
Sbjct: 313 RGLERITQLPCLKVLNLGLWQMTE 336
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 121/263 (46%), Gaps = 44/263 (16%)
Query: 224 LSALGSLFYLNLNRC-QLSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
+ + ++ LNL+ C L+D+G +IGS + LNL +ITD L + + L L
Sbjct: 27 IQGMANIESLNLSGCYNLTDNGLGHAVVQEIGSPRALNLSLCKQITDSSLGRIAQYLKGL 86
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQIT 337
E L L C N++ TG+ L GL LKSLNL R ++
Sbjct: 87 EVLELGGCS------------------NITNTGL----LLIAWGLQRLKSLNLRGCRHLS 124
Query: 338 DTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLT 385
D G+ L +T GL L L ++TD ++ R LR +L CGG ++
Sbjct: 125 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGG-IS 183
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-K 442
DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++ +
Sbjct: 184 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 243
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
L L SL+ C ++ + I R+
Sbjct: 244 GLDGLNSLSRCPCHISDDGINRM 266
>gi|374850803|dbj|BAL53782.1| hypothetical conserved protein, partial [uncultured planctomycete]
Length = 351
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 128/277 (46%), Gaps = 26/277 (9%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+T + ++ L L+ L ++ S V D + YL L L L+L P+ L + +
Sbjct: 100 LTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWTPMKGTGLKHVGQI 159
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L L L +++D+ + + L+ L+LG +TD+ + + L NL+ L
Sbjct: 160 RNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLKDLRCPE-S 218
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ D+ L L L ++ LS + ++ + L LS L+SL+L +I D L +T L
Sbjct: 219 LTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRTKIDDRALDQITVL 278
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ L HL L ITD+ A + F NL+SL + G ++D+ ++ + + +L LNLS+
Sbjct: 279 SKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKISDSVLQEVGKVHTLERLNLSKTA 338
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
+T GL+HL PL
Sbjct: 339 -------------------------VTGEGLQHLTPL 350
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 126/252 (50%), Gaps = 6/252 (2%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T QG + A L L +L L L L L LE+L++ W + + +K +
Sbjct: 100 LTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWTP-MKGTGLKHVGQ 158
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ NL+ L ++ +K+ D IA + L KL L+L G VT ++ +S L +L L RC
Sbjct: 159 IRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLKDL---RC 215
Query: 239 Q--LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
L+DD + +++ L+ L L + +T + + LK L+ L SL+L I D L +
Sbjct: 216 PESLTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRTKIDDRALDQI 275
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
T L+ LE + LS T I+D + +LKSL LD +I+D+ L + + L L+L
Sbjct: 276 TVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKISDSVLQEVGKVHTLERLNLS 335
Query: 357 GARITDSGAAYL 368
+T G +L
Sbjct: 336 KTAVTGEGLQHL 347
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 119/226 (52%), Gaps = 2/226 (0%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L+ +L+ G K +++ +L+ L L + + DE L +L L +LE+L+L + G
Sbjct: 93 LDLSHARLTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWTPMKGTG 152
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
L ++ + NL + L+ T I+D + ++ L+ L+ L+L +TD G+ ++ L L
Sbjct: 153 LKHVGQIRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLKD 212
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L +TD L LR+L + +T GV+ +K LS L L+LS+ + D+
Sbjct: 213 LRC-PESLTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRT-KIDDR 270
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L+ I+ L+ L L +S + IT A + NL+SL L+ K++
Sbjct: 271 ALDQITVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKIS 316
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 122/256 (47%), Gaps = 14/256 (5%)
Query: 48 WMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN 107
W + ++ +L + L+ S+V D L +L + +L++LD + + GL+H+ + N
Sbjct: 105 WRKI--AELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWT-PMKGTGLKHVGQIRN 161
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCN 166
L L + I + + L L KLDL G LV KG+ + L N+K
Sbjct: 162 LRVL-LLTHTKIADEHIAQIVPLTKLEKLDL------GGTLVTDKGMEFVSRLANLKDLR 214
Query: 167 C---ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C +TD K L+ L L++L +S S VT G+ LK L +L L+L + LD
Sbjct: 215 CPESLTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRTKIDDRALDQ 274
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ L L +L L+ ++D + +LK L L +I+D L + + LE LNL
Sbjct: 275 ITVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKISDSVLQEVGKVHTLERLNL 334
Query: 284 DSCGIGDEGLVNLTGL 299
+ EGL +LT L
Sbjct: 335 SKTAVTGEGLQHLTPL 350
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 4/182 (2%)
Query: 288 IGDEGLVNLTGLTN--LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
IGD + L + + S++LS ++ RK+A L +L+ L L + D L L
Sbjct: 74 IGDVEIAKLASIPEVCICSLDLSHARLTPQGWRKIAELRALRELYLADSNVDDEDLQYLA 133
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
+L L LDL + +G ++ +NLR L + + D + I L+ L L+L
Sbjct: 134 NLGSLETLDLAWTPMKGTGLKHVGQIRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGG 193
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+TDK +E +S L L L S +T + L L LR+L L S VT+ ++ L
Sbjct: 194 TL-VTDKGMEFVSRLANLKDLRCPES-LTDDATKLLARLVQLRTLCLSSSCVTSQGVESL 251
Query: 466 QS 467
++
Sbjct: 252 KT 253
>gi|290990083|ref|XP_002677666.1| predicted protein [Naegleria gruberi]
gi|284091275|gb|EFC44922.1| predicted protein [Naegleria gruberi]
Length = 262
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 8/245 (3%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLE 212
L +L SLNI +C+ D+ PL L +L L I+ + G+ + + LQ+L L++
Sbjct: 5 LKQLNSLNIGYCSV---EDIAPLGQLKDLTCLNINHIPIGLEGLKIIGENLQQLKSLDVT 61
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC--QLSDDGCEKFSKIGSLKVLNLGFNEIT--DEC 268
C +T + L +L L + Q G E S++ LK LN+G + +
Sbjct: 62 NCGITNEAAQYIRQLNNLESLTITFVFYQKCLKGVEALSEMKQLKSLNIGNSSDIGGPQG 121
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
+ L NL SL +D I DEG ++ L +L ++L+ ISD + ++GL +
Sbjct: 122 AKLISSLYNLTSLRMDGTMIEDEGARFISELKHLRFLDLTGNNISDEGAKSISGLKHVTD 181
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L++ I D G A+ ++ L L L +I D GA Y+ LRSL +CG +T
Sbjct: 182 LDMARNDIGDEGAKAIATMNQLKRLILDNNKIGDDGAQYIGKLPQLRSLAVCGNRITPVS 241
Query: 389 VKHIK 393
+++++
Sbjct: 242 IQNLR 246
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 102/229 (44%), Gaps = 27/229 (11%)
Query: 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLRGL 105
+ + +I L S+D++ +T+ +++ +NL+SL F Q G+E L +
Sbjct: 43 EGLKIIGENLQQLKSLDVTNCGITNEAAQYIRQLNNLESLTITFVFYQKCLKGVEALSEM 102
Query: 106 SNLTSLSFRRNNAI-TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L SL+ ++ I QG K + L NL L R+ G +
Sbjct: 103 KQLKSLNIGNSSDIGGPQGAKLISSLYNLTSL------RMDGTM---------------- 140
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
I D + +S L +L+ L ++ + ++D G + GL+ +T L++ + ++
Sbjct: 141 ---IEDEGARFISELKHLRFLDLTGNNISDEGAKSISGLKHVTDLDMARNDIGDEGAKAI 197
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + L L L+ ++ DDG + K+ L+ L + N IT + +L+
Sbjct: 198 ATMNQLKRLILDNNKIGDDGAQYIGKLPQLRSLAVCGNRITPVSIQNLR 246
>gi|242071889|ref|XP_002451221.1| hypothetical protein SORBIDRAFT_05g026000 [Sorghum bicolor]
gi|241937064|gb|EES10209.1| hypothetical protein SORBIDRAFT_05g026000 [Sorghum bicolor]
Length = 569
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 202/416 (48%), Gaps = 44/416 (10%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLERC 141
L SLD + C + D L + L+ RR +T G+ K G L +L ++ C
Sbjct: 78 LSSLDLSACAGLDDASLAAALPEAPAPLLAVRRCLGVTDVGLAKVAVGCPGLERLSVKWC 137
Query: 142 TRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL-QISCSKVTDSGIA 198
I V L K +L S++I + +T+ ++ LS L L+ + + C + D G+
Sbjct: 138 REISDIGVELLAKKCPQLRSVDISYLK-VTNESLRSLSTLEKLEDIAMVGCLFIDDDGLQ 196
Query: 199 YLK---GLQK---------------LTLLNLEGCPVTAACLDSLSALGS----LFYLNLN 236
L LQ+ LT+L L+G + A+ +L A+GS L + L+
Sbjct: 197 MLSMCNSLQEIETCLLSKLSTIGETLTVLRLDGLEIFAS---NLQAIGSTCKNLVEIGLS 253
Query: 237 RCQ-LSDDGCEKF-SKIGSLKVLNLGFNEI-TDECLVHL-KGLTNLESLNLDSCG-IGDE 291
+C ++DDG + L+ +++ + T++ L + + +E L L+SC I ++
Sbjct: 254 KCNGITDDGIVSLVAHCCDLRTIDVTCCHLLTNDALAAIAENCRKIECLQLESCPFISEK 313
Query: 292 GLVNLTGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG 349
GL +T L ++L+ I+L+ I+D +L+ LA S L L L I+D GL ++S G
Sbjct: 314 GLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKLGLCSSISDEGLVYISSNCG 373
Query: 350 -LTHLDLFGAR-ITDSG-AAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQ 405
L LDL+ ITD G AA K +R L +C +TDAG+KH+ L LT L L
Sbjct: 374 KLVELDLYRCSGITDDGLAAVASGCKKIRVLNLCYCTQITDAGLKHVSALEELTNLELRC 433
Query: 406 NCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHL-KPLKNLRSLTLESCKVT 458
+T + I+ G T L+ L++ + AGL L + +NLR LT+ C+VT
Sbjct: 434 LVRITGIGITSIAIGCTSLIELDLKRCYSVDDAGLWALSRYSQNLRQLTISYCQVT 489
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 173/368 (47%), Gaps = 30/368 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
++D ++++A + L SVD+S VT+ L L L+ + C+ I D GL+ L
Sbjct: 140 ISDIGVELLAKKCPQLRSVDISYLKVTNESLRSLSTLEKLEDIAMVGCLFIDDDGLQMLS 199
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGL----MKLE 158
++L + + + +++LD LE I NL+ + L
Sbjct: 200 MCNSLQEI-----ETCLLSKLSTIGETLTVLRLDGLE----IFAS--NLQAIGSTCKNLV 248
Query: 159 SLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKV--TDSGIAYLKGLQKLTLLNLEGCP 215
+ + CN ITD + L + +L+++ ++C + D+ A + +K+ L LE CP
Sbjct: 249 EIGLSKCNGITDDGIVSLVAHCCDLRTIDVTCCHLLTNDALAAIAENCRKIECLQLESCP 308
Query: 216 -VTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL 272
++ L+ ++ L S L ++L C+++D + + L +L LG + I+DE LV++
Sbjct: 309 FISEKGLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKLGLCSSISDEGLVYI 368
Query: 273 KG-LTNLESLNLDSC-GIGDEGLVNL-TGLTNLESINLSF-TGISDGSLRKLAGLSSLKS 328
L L+L C GI D+GL + +G + +NL + T I+D L+ ++ L L +
Sbjct: 369 SSNCGKLVELDLYRCSGITDDGLAAVASGCKKIRVLNLCYCTQITDAGLKHVSALEELTN 428
Query: 329 LNLDA-RQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYL--RNFKNLRSLEICGGGL 384
L L +IT G+ ++ T L LDL D + R +NLR L I +
Sbjct: 429 LELRCLVRITGIGITSIAIGCTSLIELDLKRCYSVDDAGLWALSRYSQNLRQLTISYCQV 488
Query: 385 TDAGVKHI 392
T G+ H+
Sbjct: 489 TGLGLCHL 496
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 98/237 (41%), Gaps = 50/237 (21%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P +++K ++ I + S L +DL+ + D+ L HL CS L L C ISD GL +
Sbjct: 308 PFISEKGLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKLGLCSSISDEGLVY 367
Query: 102 LRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ L L R + IT G+ A A G K+ L
Sbjct: 368 ISSNCGKLVELDLYRCSGITDDGLAAVA-----------------------SGCKKIRVL 404
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
N+ +C ITD+ +K +S L L +L++ C ++T GI + GC
Sbjct: 405 NLCYCTQITDAGLKHVSALEELTNLELRCLVRITGIGITSIA----------IGCT---- 450
Query: 220 CLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGS-LKVLNLGFNEITDECLVHLKG 274
SL L+L RC DD G S+ L+ L + + ++T L HL G
Sbjct: 451 ---------SLIELDLKRCYSVDDAGLWALSRYSQNLRQLTISYCQVTGLGLCHLLG 498
>gi|290984031|ref|XP_002674731.1| predicted protein [Naegleria gruberi]
gi|284088323|gb|EFC41987.1| predicted protein [Naegleria gruberi]
Length = 356
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 128/276 (46%), Gaps = 4/276 (1%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L N+ L++ + LV +K L +L N N I + K +S L L L I
Sbjct: 76 LQNIATLEINTTFDNYKKLVLMKSLTELIGCN----NNIGNEGAKYISKLKQLTHLYILN 131
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++ D G Y+ L +L L++ + +S L L L+++ + +G + +
Sbjct: 132 NEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISELKQLTNLDISVNHIGAEGAQHIA 191
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
++ L +LN+ N I E ++ L L L + + I EG ++ + L +N+S+
Sbjct: 192 EMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNNIDVEGAKYISEMKQLTDLNISY 251
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
I + ++ L L L++ QI G+ + + LT L I D GA Y+
Sbjct: 252 NNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYIS 311
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
K L +L+I +++ GVK I+++ LT+LN+ Q
Sbjct: 312 EMKQLTNLDISNNSISNEGVKCIEEMKHLTVLNIRQ 347
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 113/257 (43%), Gaps = 9/257 (3%)
Query: 173 MKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
MK L+ L I C+ + + G Y+ L++LT L + + +S L L
Sbjct: 97 MKSLTEL-------IGCNNNIGNEGAKYISKLKQLTHLYILNNEIDDEGAKYISELNQLV 149
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L+++ + +G + S++ L L++ N I E H+ + L LN+ + IG E
Sbjct: 150 SLDISYNNIGVEGAKYISELKQLTNLDISVNHIGAEGAQHIAEMNQLTILNISTNNIGYE 209
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G + L L + + I + ++ + L LN+ I G ++ L LT
Sbjct: 210 GAKYIGKLKQLTCLTIFNNNIDVEGAKYISEMKQLTDLNISYNNIDVEGAKYISELKQLT 269
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
LD+ +I G Y+ L L + D G K+I ++ LT L++S N +++
Sbjct: 270 DLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYISEMKQLTNLDISNNS-ISN 328
Query: 412 KTLELISGLTGLVSLNV 428
+ ++ I + L LN+
Sbjct: 329 EGVKCIEEMKHLTVLNI 345
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
LK LT+L LN + I DEG ++ L L S+++S+ I + ++ L L +L++
Sbjct: 121 LKQLTHLYILNNE---IDDEGAKYISELNQLVSLDISYNNIGVEGAKYISELKQLTNLDI 177
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
I G + + LT L++ I GA Y+ K L L I + G K+
Sbjct: 178 SVNHIGAEGAQHIAEMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNNIDVEGAKY 237
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
I ++ LT LN+S N N+ + + IS L L L++S ++I + G++++ + L L+
Sbjct: 238 ISEMKQLTDLNISYN-NIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTILS 296
Query: 452 L-------ESCKVTANDIKRLQSRDLPN 472
E K + ++K+L + D+ N
Sbjct: 297 ASHNNIGDEGAKYIS-EMKQLTNLDISN 323
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 111/238 (46%), Gaps = 2/238 (0%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + G +++ L LT L + NN I +G K + L LV LD+ G +
Sbjct: 110 IGNEGAKYISKLKQLTHL-YILNNEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISE 168
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L +L +L+I N I + ++ + L L IS + + G Y+ L++LT L +
Sbjct: 169 LKQLTNLDIS-VNHIGAEGAQHIAEMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFN 227
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L LN++ + +G + S++ L L++ N+I + + ++
Sbjct: 228 NNIDVEGAKYISEMKQLTDLNISYNNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIA 287
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+ L L+ IGDEG ++ + L ++++S IS+ ++ + + L LN+
Sbjct: 288 EMNQLTILSASHNNIGDEGAKYISEMKQLTNLDISNNSISNEGVKCIEEMKHLTVLNI 345
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+ +KL + SL L I + G ++ L LTHL + I D GA Y+ L
Sbjct: 90 NYKKLVLMKSLTELIGCNNNIGNEGAKYISKLKQLTHLYILNNEIDDEGAKYISELNQLV 149
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
SL+I + G K+I +L LT L++S N ++ + + I+ + L LN+S + I
Sbjct: 150 SLDISYNNIGVEGAKYISELKQLTNLDISVN-HIGAEGAQHIAEMNQLTILNISTNNIGY 208
Query: 436 AGLRHLKPLKNLRSLTL 452
G +++ LK L LT+
Sbjct: 209 EGAKYIGKLKQLTCLTI 225
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 101/212 (47%), Gaps = 15/212 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L+S+D+S +++ G ++ + L +LD + I G +H+ ++ LT L+
Sbjct: 143 SELNQLVSLDISYNNIGVEGAKYISELKQLTNLDISVN-HIGAEGAQHIAEMNQLTILNI 201
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLESLNIKWCNC 167
NN I +G K L L C I ++++G + +L LNI + N
Sbjct: 202 STNN-IGYEGAKYIGKLKQLT------CLTIFNNNIDVEGAKYISEMKQLTDLNISY-NN 253
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I K +S L L L IS +++ G+ Y+ + +LT+L+ + +S +
Sbjct: 254 IDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYISEM 313
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L+++ +S++G + ++ L VLN+
Sbjct: 314 KQLTNLDISNNSISNEGVKCIEEMKHLTVLNI 345
>gi|72385461|ref|XP_846398.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|25956236|emb|CAB95328.2| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1448
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 134/506 (26%), Positives = 208/506 (41%), Gaps = 76/506 (15%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H +C NL +LD +FC
Sbjct: 610 ALNELNLSNCFGINAGWEALEKLQ--QLHVAILSNTHITDRDISHFSNCKNLITLDLSFC 667
Query: 92 IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G++ +I
Sbjct: 668 NKLLD-----VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIV 722
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ V+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 723 SLGNGNSFVRLSLENC-KGFGDVAPLSNLVTLEELNLHYCDKVT-SGMGTLGRLPQLRVL 780
Query: 186 QISCSKVTD------------------------SGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ ++V D + I+ + L L LN++ C +
Sbjct: 781 DLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISAIASLTALEELNIDNCCNVTSGW 840
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLES 280
+ L L L+ + +D+ S+ SL LNL F +ITD + L +T LE
Sbjct: 841 NVFGTLHQLRVATLSNTRTNDENVRHVSECKSLNTLNLAFCKDITD--VTALSKITMLEE 898
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQIT 337
LNLD C +G+ L L +++ + DG ++ L SL LNL+ R
Sbjct: 899 LNLDCCHNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLE-RSRG 957
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKHIKD 394
+ AL+++ L L L AR + +F L L + TD K+I +
Sbjct: 958 RISVKALSNVATLEELVLDHAR----KVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISE 1013
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
SL LNLS +TD ++ +++N N G L L LR L
Sbjct: 1014 SKSLRSLNLSHCKWVTDISVLSSLLTLEELNVNCCNG--IRKGWESLGKLPLLRVAILSD 1071
Query: 455 CKVTANDIKRLQS-RDLPNLVSFRPE 479
K+TA DI L S + L L F+ E
Sbjct: 1072 TKITAKDIACLSSCKKLVKLKFFQCE 1097
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 176/406 (43%), Gaps = 24/406 (5%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRN 116
+L + L G D+G+ L + L+ LD + ++ E LR L + T +S +
Sbjct: 539 TLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSG----TNTDNESLRSLCLSQTVVSLNLS 594
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ + + L L +L+L C I+ G L+ L +L + I ITD D+
Sbjct: 595 HCWKMTNVSHISSLEALNELNLSNCFGINAGWEALEKLQQLH-VAILSNTHITDRDISHF 653
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S NL +L +S C+K+ D + L + L LNL+ C L L L L LN+
Sbjct: 654 SNCKNLITLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNI 711
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNL----GFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
QL D S L+L GF ++ L L LE LNL C
Sbjct: 712 KGVQLEDSVIVSLGNGNSFVRLSLENCKGFGDVAP-----LSNLVTLEELNLHYCDKVTS 766
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-DARQITDTGLAALTSLTG 349
G+ L L L ++L T + D SL + SS L SLNL + ++IT ++A+ SLT
Sbjct: 767 GMGTLGRLPQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKIT--SISAIASLTA 824
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
L L++ SG LR + D V+H+ + SL LNL+ ++
Sbjct: 825 LEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENVRHVSECKSLNTLNLAFCKDI 884
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
TD T +S +T L LN+ G+ L L R L+++ C
Sbjct: 885 TDVT--ALSKITMLEELNLDCCHNIRKGIETLGTLPKARILSMKEC 928
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 147/325 (45%), Gaps = 36/325 (11%)
Query: 168 ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
IT D+ LS L L+ C K++D + Y +Q L L + C L++L
Sbjct: 1074 ITAKDIACLSSCKKLVKLKFFQCEKLSDVTVVY--KIQSLEELIVTSCSDGLKGLNALGT 1131
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
L L + +L + SD E SL L++ E+TD + L +T+LE L+L
Sbjct: 1132 LPRLRFHHLRNVRGSDISVESIGTSKSLVRLHIEVGEELTD--ITPLSNITSLEELSLRD 1189
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAAL 344
EG+ L L L+S++L + ISD +L + S+ SLNLD+ ++TD ++ +
Sbjct: 1190 YRKPPEGVGTLGKLPRLKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTD--ISHI 1247
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 402
++LT L L+L G SG L LR +LE D G +I L LN
Sbjct: 1248 SNLTALEELNLGGCYYITSGWEALSELPRLRVLNLEFTRATTRDGGY-YISRCKYLVTLN 1306
Query: 403 LSQNCNLTD-------KTL---------ELISGLTGLVS------LNVSNSRITSAGLRH 440
L + C++TD KTL EL G + L + LN+ S IT LR
Sbjct: 1307 L-ELCDMTDASCLANIKTLEELHIGGCDELTQGFSALFTLPQLRILNLICSLITDEDLRE 1365
Query: 441 LKPLKNLRSLTLESCKVTANDIKRL 465
++P + L L C V NDI L
Sbjct: 1366 IQPPHTIEELNLSYC-VELNDITPL 1389
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 179/412 (43%), Gaps = 56/412 (13%)
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
HL + L L+ +T ++ + L NL L+L + + KL L
Sbjct: 251 HLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTNIDDSCVEEISACAKLSKL 308
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
I CN ITD+ P+S L L+ L +S +T GI L L +L +L+L G PV C
Sbjct: 309 CISKCNNITDA--TPISQLAALEELNLSNCHIT-KGIGTLGMLLRLRMLDLSGVPVEDNC 365
Query: 221 LDSLSALGSLFYLNLN-RCQLSD---------------DGCEKFSK-------IGSLKVL 257
L L GSL LN++ R QL+D +GC + ++ + L+VL
Sbjct: 366 LKDLCDCGSLERLNISYRIQLTDINPLSNATAIEELNLNGCRRITRGIGVVWALPKLRVL 425
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGS 316
++ +++ L + L ++LD+C G GD L L+ + LE +N+
Sbjct: 426 HMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQKCADIISG 483
Query: 317 LRKLAGLSSLKSLNLDARQITD---TGLAA--------LTSLTGLTHLD----------- 354
+ L L L+ LN+ I+ TG+ A + S+TGL++++
Sbjct: 484 VGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSNVEALANILTLEKL 543
Query: 355 -LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
L G D+G L N L+ L++ G + ++ + ++ LNLS +T+
Sbjct: 544 SLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTN-- 601
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ IS L L LN+SN +AG L+ L+ L L + +T DI
Sbjct: 602 VSHISSLEALNELNLSNCFGINAGWEALEKLQQLHVAILSNTHITDRDISHF 653
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 127/518 (24%), Positives = 207/518 (39%), Gaps = 124/518 (23%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSNL 108
SG V D+ L L DC +L+ L+ ++ IQ++D +E L RG+ +
Sbjct: 357 SGVPVEDNCLKDLCDCGSLERLNISYRIQLTDINPLSNATAIEELNLNGCRRITRGIGVV 416
Query: 109 TSLSFRR----------------------------NNAITAQGMKAFAGLINLVKLDLER 140
+L R +N M + ++ L +L++++
Sbjct: 417 WALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQK 476
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNC-------------ITDSDMKPLSGLTNLKSLQ- 186
C I G+ L L L LNIK + + +M+ ++GL+N+++L
Sbjct: 477 CADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSNVEALAN 536
Query: 187 -ISCSKVT-------DSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-------------- 224
++ K++ D+GI L L +L +L+L G L SL
Sbjct: 537 ILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHC 596
Query: 225 ---------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
S+L +L LNL+ C + G E K+ L V L ITD + H
Sbjct: 597 WKMTNVSHISSLEALNELNLSNCFGINAGWEALEKLQQLHVAILSNTHITDRDISHFSNC 656
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTN---LESINL-SFTGISDGSLRKLAGLSSLKSLNL 331
NL +L+L C L+++T L+N LE +NL S + I G L L L L LN+
Sbjct: 657 KNLITLDLSFCN----KLLDVTALSNITTLEELNLDSCSNIRKG-LSVLGELPRLCVLNI 711
Query: 332 DARQITDT-----------------------GLAALTSLTGLTHLDLFGARITDSGAAYL 368
Q+ D+ +A L++L L L+L SG L
Sbjct: 712 KGVQLEDSVIVSLGNGNSFVRLSLENCKGFGDVAPLSNLVTLEELNLHYCDKVTSGMGTL 771
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSS-LTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
LR L++ + D +++I SS L LNLS +T ++ I+ LT L LN
Sbjct: 772 GRLPQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKIT--SISAIASLTALEELN 829
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ N ++G L LR TL + + +++ +
Sbjct: 830 IDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENVRHV 867
>gi|334117579|ref|ZP_08491670.1| Adenylate cyclase [Microcoleus vaginatus FGP-2]
gi|333460688|gb|EGK89296.1| Adenylate cyclase [Microcoleus vaginatus FGP-2]
Length = 516
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 186/372 (50%), Gaps = 35/372 (9%)
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
G + L L+NLT L N A G +K A L NL +L+L G + L L
Sbjct: 100 GDITPLASLTNLTVLDLGFN----ALGDIKPLASLTNLTRLNL--FGNQIGDIKPLASLT 153
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
KL L + N I D+KPL+ LTNL L +S ++V D I L L LT L+L+G
Sbjct: 154 KLTELTLN-NNKI--GDIKPLASLTNLTDLVLSSNQVGD--IKPLASLTNLTRLDLDGNV 208
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ + L++L +L L+L+ + D + + + +L L+L N+I D + L L
Sbjct: 209 I--GDIKPLASLTNLTRLDLDGNVIGD--IKPLASLTNLSSLDLDDNQIGD--IKPLASL 262
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
TNL L+L IGD + L LTNL ++L I G ++ LA L++L L L + Q
Sbjct: 263 TNLMGLDLRRIVIGD--IKPLASLTNLTDLSLDDNQI--GDIKPLASLTNLTRLVLSSNQ 318
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I D + L SLT L+ LDL G I D L + NL SL++ + D +K + L
Sbjct: 319 IRD--IKPLASLTNLSSLDLSGNVIGD--IKPLASLTNLSSLDLNNNKIGD--IKPLASL 372
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+ LT L LS N + D ++ ++ LT L SL + + I ++ L L NL SL L+
Sbjct: 373 TKLTELTLSGNV-IGD--IKPLASLTNLSSLVLFGNVI--GDIKPLASLTNLSSLVLDGN 427
Query: 456 KVTANDIKRLQS 467
+ DIK L S
Sbjct: 428 VI--GDIKALAS 437
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 126/275 (45%), Gaps = 37/275 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+DL + + D + L +NL LD +I G ++ L L+NLT LS N
Sbjct: 241 TNLSSLDLDDNQIGD--IKPLASLTNLMGLDLR---RIVIGDIKPLASLTNLTDLSLDDN 295
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+K A L NL +L L +I + L L L SL++ N I D+KPL
Sbjct: 296 QI---GDIKPLASLTNLTRLVLS-SNQIRD-IKPLASLTNLSSLDLS-GNVI--GDIKPL 347
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLN- 234
+ LTNL SL ++ +K+ D I L L KLT L L G + L SL+ L SL
Sbjct: 348 ASLTNLSSLDLNNNKIGD--IKPLASLTKLTELTLSGNVIGDIKPLASLTNLSSLVLFGN 405
Query: 235 -----------LNRCQLSDDG-----CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
N L DG + + + +L L L N I D + L LTNL
Sbjct: 406 VIGDIKPLASLTNLSSLVLDGNVIGDIKALASLTNLAGLFLSSNVIGD--IKPLASLTNL 463
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
SL+L IGD + L LTNL ++LS I+
Sbjct: 464 SSLDLSDNHIGD--IKPLASLTNLIELHLSGNPIA 496
>gi|47219755|emb|CAG03382.1| unnamed protein product [Tetraodon nigroviridis]
Length = 388
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 152/315 (48%), Gaps = 46/315 (14%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDNGL--------GHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 123 RVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSC 182
Query: 215 -PVTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
V+ + LS + SL L L CQ L+D + SK + LKVLNL F
Sbjct: 183 RHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCG 242
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF----------- 309
I+D ++HL +T+L SLNL SC I D G+++L G L +++SF
Sbjct: 243 GISDGGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAH 302
Query: 310 --TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 364
G+ DG R + + LK+LN+ +ITD GL + LT LT +DL+G +IT G
Sbjct: 303 IAQGLDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRG 362
Query: 365 AAYLRNFKNLRSLEI 379
+ L+ L +
Sbjct: 363 LERITQLPCLKVLNL 377
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 155/306 (50%), Gaps = 59/306 (19%)
Query: 68 DVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
++TD+GL H ++D +L+ L+ + C QI+D L + AQ +K
Sbjct: 105 NLTDNGLGHAFVQDIPSLRVLNLSLCKQITDSSLGRI------------------AQYLK 146
Query: 126 AFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--- 180
NL L+L C+ I G L+ GL +L+SLN++ C ++D + LSG+T
Sbjct: 147 ------NLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSA 200
Query: 181 -----NLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFY 232
+L+ L + C K+TD + ++ KGL KL +LNL C ++ + LS + L
Sbjct: 201 AEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDGGMIHLSHMTHLCS 260
Query: 233 LNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL------------KGLT 276
LNL C +SD G + +GSL++ L++ F ++I D+ L H+ + +
Sbjct: 261 LNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKIGDQSLAHIAQGLDDGINRMVRQMH 319
Query: 277 NLESLNLDSCG-IGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA 333
L++LN+ CG I D+GL + LT L I+L T I+ L ++ L LK LNL
Sbjct: 320 ELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGL 379
Query: 334 RQITDT 339
Q+T++
Sbjct: 380 WQMTES 385
>gi|413916550|gb|AFW56482.1| hypothetical protein ZEAMMB73_356315 [Zea mays]
Length = 660
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 141/485 (29%), Positives = 215/485 (44%), Gaps = 72/485 (14%)
Query: 34 QDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCI 92
+ +CL + GV + ++ + + L +VDLS D L S L+ L + C+
Sbjct: 108 RSVCLARANGVGWRGLEALVAACPKLAAVDLSHCVTAGDREAAALAAASELRDLRLDKCL 167
Query: 93 QISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN 150
++D GL + G L LS + I+ G+ A L L++ +G L +
Sbjct: 168 AVTDMGLAKVAVGCPKLEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLGS 227
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KGLQ 204
+ L +LE L + C+ I D ++ LS G +L+S+ +S C VT G+A L LQ
Sbjct: 228 ISSLERLEELAMVCCSGIDDEGLELLSKGSDSLQSVDVSRCDHVTSEGLASLIDGRNFLQ 287
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC------------QLSD-------DGC 245
KL AA D L +G F L R ++SD + C
Sbjct: 288 KL----------YAA--DCLHEIGQRFLSKLARLKETLTLLKLDGLEVSDSLLQAIGESC 335
Query: 246 EKFSKIGSLK---VLNLGFNEITDEC-------LVHLKGLTN------------LESLNL 283
K +IG K V + G + + C L +TN LE L L
Sbjct: 336 NKLVEIGLSKCSGVTDGGISSLVARCSDLRTIDLTCCNLITNNALDSIADNCKMLECLRL 395
Query: 284 DSCG-IGDEGLVNLTG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTG 340
+SC I ++GL +T NL+ I+L+ G+ D +L+ LA S L+ L L I+D G
Sbjct: 396 ESCSLINEKGLERITTCCPNLKEIDLTDCGVDDAALQHLAKCSELRILKLGLCSSISDRG 455
Query: 341 LAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGVKHIKDLS 396
+A ++S G L LDL+ ITD G A L N K ++ L +C +TD G+ H+ L
Sbjct: 456 IAFISSNCGKLVELDLYRCNSITDDGLAALANGCKRIKLLNLCYCNKITDTGLGHLGSLE 515
Query: 397 SLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLE 453
LT L L +T + ++ G L+ L++ + AGL L NLR LT+
Sbjct: 516 ELTNLELRCLVRVTGIGISSVAIGCKNLIELDLKRCYSVDDAGLWALARYALNLRQLTIS 575
Query: 454 SCKVT 458
C+VT
Sbjct: 576 YCQVT 580
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 125/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K ++ I + +L +DL+ V D+ L HL CS L+ L C ISD G+ +
Sbjct: 401 INEKGLERITTCCPNLKEIDLTDCGVDDAALQHLAKCSELRILKLGLCSSISDRGIAFIS 460
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A A G +++ LN+
Sbjct: 461 SNCGKLVELDLYRCNSITDDGLAALA-----------------------NGCKRIKLLNL 497
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITD+ + L L L +L++ C +VT GI+ V C
Sbjct: 498 CYCNKITDTGLGHLGSLEELTNLELRCLVRVTGIGIS----------------SVAIGC- 540
Query: 222 DSLSALGSLFYLNLNRCQLSDD-GCEKFSKIG-SLKVLNLGFNEITDECLVHLKGLTNLE 279
+L L+L RC DD G ++ +L+ L + + ++T L HL L++L
Sbjct: 541 ------KNLIELDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 592
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L D +V+L+ ++ +E ++ G L+KL L LK++
Sbjct: 593 CLQ-------DIKMVHLSWVS-IEGFEMALRAAC-GRLKKLKMLCGLKTV 633
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 150/333 (45%), Gaps = 54/333 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSN-LQSLDFNF 90
L++L + G++D+ +++++ SL SVD+S D VT GL L D N LQ L
Sbjct: 234 LEELAMVCCSGIDDEGLELLSKGSDSLQSVDVSRCDHVTSEGLASLIDGRNFLQKLYAAD 293
Query: 91 CI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLDLERCTRI-HGG 147
C+ +I L L L +L ++ ++A N LV++ L +C+ + GG
Sbjct: 294 CLHEIGQRFLSKLARLKETLTLLKLDGLEVSDSLLQAIGESCNKLVEIGLSKCSGVTDGG 353
Query: 148 LVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +L L ++++ CN IT++ + ++ N K L+ C ++ + KGL+++
Sbjct: 354 ISSLVARCSDLRTIDLTCCNLITNNALDSIA--DNCKMLE--CLRLESCSLINEKGLERI 409
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEIT 265
T CP +L ++L C + D + +K L++L LG + I+
Sbjct: 410 TTC----CP-------------NLKEIDLTDCGVDDAALQHLAKCSELRILKLGLCSSIS 452
Query: 266 DECLVHLKG-LTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTGISDGSLRKLAG 322
D + + L L+L C I D+GL L G ++ +NL +
Sbjct: 453 DRGIAFISSNCGKLVELDLYRCNSITDDGLAALANGCKRIKLLNLCYCN----------- 501
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+ITDTGL L SL LT+L+L
Sbjct: 502 ------------KITDTGLGHLGSLEELTNLEL 522
>gi|290993827|ref|XP_002679534.1| predicted protein [Naegleria gruberi]
gi|284093151|gb|EFC46790.1| predicted protein [Naegleria gruberi]
Length = 305
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 18/230 (7%)
Query: 251 IGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
I L + L N I E L+G+ NL SLN+ S IG EG ++G+ LE + L F
Sbjct: 18 IHRLMIYKLDDNAIYGEVFYRALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKLILVF 77
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
+ + ++ + +L SL + + I D G L+ + LT+LD+ I + G +R
Sbjct: 78 NNVGTEGAKYISEMENLTSLIIRSNNIGDEGAIHLSGMKKLTNLDVSDNMIREDGMRAIR 137
Query: 370 NFKNLRSLEICGG----------GLTDAGVKH------IKDLSSLTLLNLSQNCNLTDKT 413
N LRS CG LT V H I ++LT L++ C + D
Sbjct: 138 NMTQLRSFVDCGSCALEEVSKMDQLTYLDVSHNLSGAAIGKFNNLTWLSMVNTC-IGDNE 196
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
LELIS L L VSN+ ITS G++ L +K L++L + + +K
Sbjct: 197 LELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDNGINEEGVK 246
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 128/264 (48%), Gaps = 10/264 (3%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
+L + +L + L+ + +L + +L LN++ Q+ +G + S + L+ L
Sbjct: 14 FLGNIHRLMIYKLDDNAIYGEVFYRALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKL 73
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSL 317
L FN + E ++ + NL SL + S IGDEG ++L+G+ L ++++S I + +
Sbjct: 74 ILVFNNVGTEGAKYISEMENLTSLIIRSNNIGDEGAIHLSGMKKLTNLDVSDNMIREDGM 133
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
R + ++ L+S D G AL ++ + L SGAA + F NL L
Sbjct: 134 RAIRNMTQLRSF-------VDCGSCALEEVSKMDQLTYLDVSHNLSGAA-IGKFNNLTWL 185
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
+ + D ++ I LT L +S N +T + ++ +S + L +L++ ++ I G
Sbjct: 186 SMVNTCIGDNELELISKYPKLTKLFVSNNF-ITSEGVKPLSEMKQLKALHIGDNGINEEG 244
Query: 438 LRHLKPLKNLRSLTLESCKVTAND 461
++ + +K L L +E ++ ND
Sbjct: 245 VKIISEMKQLTELNVEGLNISEND 268
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 136/284 (47%), Gaps = 15/284 (5%)
Query: 103 RGLSNLTSLSFRR--NNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
R L N+ L + +NAI + +A G+ NL L++ G + G+ +LE
Sbjct: 13 RFLGNIHRLMIYKLDDNAIYGEVFYRALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEK 72
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L + + N T+ K +S + NL SL I + + D G +L G++KLT L++ +
Sbjct: 73 LILVFNNVGTEG-AKYISEMENLTSLIIRSNNIGDEGAIHLSGMKKLTNLDVSDNMIRED 131
Query: 220 CLDSLSALGSLF-YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ ++ + L +++ C L E+ SK+ L L++ N ++ + LT L
Sbjct: 132 GMRAIRNMTQLRSFVDCGSCAL-----EEVSKMDQLTYLDVSHN-LSGAAIGKFNNLTWL 185
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
+N +C IGD L ++ L + +S I+ ++ L+ + LK+L++ I +
Sbjct: 186 SMVN--TC-IGDNELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDNGINE 242
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK-NLRSLEICG 381
G+ ++ + LT L++ G I+++ L K L+SL I G
Sbjct: 243 EGVKIISEMKQLTELNVEGLNISENDREVLLCMKSQLKSLNITG 286
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 122/281 (43%), Gaps = 37/281 (13%)
Query: 53 ASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
A QG ++L S+++S + G + L+ L F + G +++ + NLTSL
Sbjct: 39 ALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKLILVFN-NVGTEGAKYISEMENLTSL 97
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
R NN G ++L G+ KL +L++ N I +
Sbjct: 98 IIRSNNIGDE-------------------------GAIHLSGMKKLTNLDVS-DNMIRED 131
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
M+ + +T L+S + C + + + +LT L++ AA + +L
Sbjct: 132 GMRAIRNMTQLRSF-VDCGSC---ALEEVSKMDQLTYLDVSHNLSGAA----IGKFNNLT 183
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+L++ + D+ E SK L L + N IT E + L + L++L++ GI +E
Sbjct: 184 WLSMVNTCIGDNELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDNGINEE 243
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNL 331
G+ ++ + L +N+ IS+ L + S LKSLN+
Sbjct: 244 GVKIISEMKQLTELNVEGLNISENDREVLLCMKSQLKSLNI 284
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 42/213 (19%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++V G ++ + NL SL I D G HL G+ LT+L +N I GM+A
Sbjct: 78 NNVGTEGAKYISEMENLTSLIIR-SNNIGDEGAIHLSGMKKLTNLDVS-DNMIREDGMRA 135
Query: 127 FAGLINLVKL------DLERCTRIHGGLV-----NLKGLMKLESLNIKWC---------- 165
+ L LE +++ NL G + N+ W
Sbjct: 136 IRNMTQLRSFVDCGSCALEEVSKMDQLTYLDVSHNLSGAAIGKFNNLTWLSMVNTCIGDN 195
Query: 166 ------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
N IT +KPLS + LK+L I + + + G+ + +++LT
Sbjct: 196 ELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDNGINEEGVKIISEMKQLT 255
Query: 208 LLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQ 239
LN+EG ++ + L + S L LN+ C+
Sbjct: 256 ELNVEGLNISENDREVLLCMKSQLKSLNITGCE 288
>gi|290977818|ref|XP_002671634.1| predicted protein [Naegleria gruberi]
gi|284085204|gb|EFC38890.1| predicted protein [Naegleria gruberi]
Length = 359
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 157/338 (46%), Gaps = 10/338 (2%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD-FNFCIQISDGGLEHL 102
V+ +W +VI + L++ D G L++ NLQ D F + E +
Sbjct: 6 VSKQWFNVIRNGIKHSLTIR---KDTKLKGQF-LENVENLQVFDKFRLPNRFDCEIFESM 61
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLN 161
+ L+ + + + I ++G K AGL NL + ++ + L L L +L L+
Sbjct: 62 KKLTKV----YLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLS 117
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
I N IT ++ LS L+ L L I+ ++ TD + + ++L LN+ ++
Sbjct: 118 IGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSA 177
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ +S L L L +N Q+ G + S + LK L+ + ++ + + H+ +T L L
Sbjct: 178 EYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHL 237
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
+ + IG+ G N+ L L+ +++S+ GI++ + L+ L L LN+ I + L
Sbjct: 238 YICNTKIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLAL 297
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
+ + LT+LD+ I D G Y+ K L+ + I
Sbjct: 298 TFINKMNQLTYLDVSYNGINDEGLIYISKMKPLKQVGI 335
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 6/286 (2%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
F + L K+ L T G L GL L +++ N + + LS L+ L L
Sbjct: 58 FESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLS 117
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
I S + +T G+ YL L KLT L + G T + +S+ L LN+ +SD
Sbjct: 118 IGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSA 177
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
E S + L VL + N+I + + G+ L+ L+ +G+ G+ ++ +T L +
Sbjct: 178 EYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHL 237
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
+ T I + + + L L+ L++ I + + L+ L LT L++ G+ I +
Sbjct: 238 YICNTKIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLAL 297
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-----LLNLSQN 406
++ L L++ G+ D G+ +I + L L LS+N
Sbjct: 298 TFINKMNQLTYLDVSYNGINDEGLIYISKMKPLKQVGIGFLQLSRN 343
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 132/286 (46%), Gaps = 1/286 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L V LS + G +L +NL + + + L +L LS LT LS N
Sbjct: 64 LTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLSIGSKNN 123
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G++ + L L L + + + +L++LNI + N I+D + +S
Sbjct: 124 ITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNI-YSNLISDKSAEYISN 182
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L L L I+ +++ G ++ G+++L L+ + + + + L +L +
Sbjct: 183 LDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHLYICNT 242
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ + G + K+ L++L++ +N I +E + L L L LN+ I + L +
Sbjct: 243 KIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLALTFINK 302
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ L +++S+ GI+D L ++ + LK + + Q++ + +L
Sbjct: 303 MNQLTYLDVSYNGINDEGLIYISKMKPLKQVGIGFLQLSRNQMGSL 348
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 98/188 (52%), Gaps = 3/188 (1%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLN 330
+ + L + L S I +G L GL NL I++ S+ + SL L+ LS L L+
Sbjct: 58 FESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLS 117
Query: 331 LDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+ ++ IT G+ L+ L+ LT+L + G TD + +FK L++L I ++D
Sbjct: 118 IGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSA 177
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
++I +L LT+L ++ N + K + ISG+ L L+ S +++ G++H+ + L
Sbjct: 178 EYISNLDELTVLVINNN-QIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTH 236
Query: 450 LTLESCKV 457
L + + K+
Sbjct: 237 LYICNTKI 244
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 126/281 (44%), Gaps = 27/281 (9%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSL 230
D + + L + +S + G YL GL LT ++++ L LS L L
Sbjct: 54 DCEIFESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQL 113
Query: 231 FYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L++ ++ ++ +G E S++ L L + NE TDE + + L++LN+ S I
Sbjct: 114 TKLSIGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLIS 173
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
D+ ++ L L + ++ I + ++G+ LK L+ ++ +TG+ + +T
Sbjct: 174 DKSAEYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQ 233
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
LTHL IC + ++G K+I L L LL++S N +
Sbjct: 234 LTHL------------------------YICNTKIGNSGAKNIIKLKQLQLLDISYN-GI 268
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
++ +EL+S L L LN+S S I + L + + L L
Sbjct: 269 NNEIVELLSQLDQLTFLNISGSAIDNLALTFINKMNQLTYL 309
>gi|290980799|ref|XP_002673119.1| predicted protein [Naegleria gruberi]
gi|284086700|gb|EFC40375.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/401 (23%), Positives = 172/401 (42%), Gaps = 51/401 (12%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S + SG ++ L L FC D +HL L +LT L N I +G K
Sbjct: 43 SKIDPSGFKYICSLEQLTDLYMTFCYFGFDIA-KHLPSLKSLTYL-LITGNYIGVEGAKY 100
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L +L + G + GL +L LNI+ N IT K +S + L L+
Sbjct: 101 IGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIR-ANEITMDGAKFISEMKQLTGLK 159
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNL-------EGCPVTAACL-------------DSLSA 226
I + + D G ++ G+++LT L++ G + + D +
Sbjct: 160 IVGNNICDEGAKFISGMKQLTNLDIASNNIGENGAKYVSEMMNIRKLDIGFNSINDGVKC 219
Query: 227 LGSLFYL---NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
G + L N+N C + DG + S FN++T HL NL
Sbjct: 220 FGEMKQLTDLNVNSCCIGLDGTKYISS----------FNQLT-----HLSIAENL----- 259
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
I G ++++ + NL +++S I D ++ ++ ++ L LN+ + IT G+
Sbjct: 260 ----ITPYGAIHISQMKNLIKLDISDNRIRDNGVQSISEMNQLTELNVSSIDITPIGIQY 315
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
+ + LT+L + I + A + K+L L I + D G K I ++ LT L++
Sbjct: 316 ICKMDNLTYLIIAHNNIGEKSANQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDI 375
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
N + D+ ++ +SG+ L LN ++ I+ G ++++ +
Sbjct: 376 GYN-EIGDEGVKALSGMKQLTRLNAVDNNISDEGEKYIREM 415
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 146/318 (45%), Gaps = 9/318 (2%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G +++ GL LT L+ R N IT G K + + L L + G + G
Sbjct: 117 IGPEGAKYISGLEQLTFLNIRAN-EITMDGAKFISEMKQLTGLKIVGNNICDEGAKFISG 175
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L +L+I N I ++ K +S + N++ L I + + D G+ +++LT LN+
Sbjct: 176 MKQLTNLDIA-SNNIGENGAKYVSEMMNIRKLDIGFNSIND-GVKCFGEMKQLTDLNVNS 233
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
C + +S+ L +L++ ++ G S++ +L L++ N I D + +
Sbjct: 234 CCIGLDGTKYISSFNQLTHLSIAENLITPYGAIHISQMKNLIKLDISDNRIRDNGVQSIS 293
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L LN+ S I G+ + + NL + ++ I + S +++ + L L++
Sbjct: 294 EMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGEKSANQISEMKHLAQLSIYH 353
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+ D G ++ + LT LD+ I D G L K L L ++D G K+I+
Sbjct: 354 NAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKALSGMKQLTRLNAVDNNISDEGEKYIR 413
Query: 394 DLSSLTLLNLSQNCNLTD 411
+ +NL+ + ++ D
Sbjct: 414 E------MNLADHVDIYD 425
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 146/315 (46%), Gaps = 17/315 (5%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSG---LIHLKDCSNLQSLDFNFCIQISDGGLEH 101
I +G+ +S +++ +++T G + +K + L+ + N C D G +
Sbjct: 117 IGPEGAKYISGLEQLTFLNIRANEITMDGAKFISEMKQLTGLKIVGNNIC----DEGAKF 172
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
+ G+ LT+L NN I G K + ++N+ KLD+ I+ G+ + +L LN
Sbjct: 173 ISGMKQLTNLDIASNN-IGENGAKYVSEMMNIRKLDI-GFNSINDGVKCFGEMKQLTDLN 230
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ C CI K +S L L I+ + +T G ++ ++ L L++ + +
Sbjct: 231 VNSC-CIGLDGTKYISSFNQLTHLSIAENLITPYGAIHISQMKNLIKLDISDNRIRDNGV 289
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
S+S + L LN++ ++ G + K+ +L L + N I ++ + + +L L
Sbjct: 290 QSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGEKSANQISEMKHLAQL 349
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
++ +GDEG ++ + L +++ + I D ++ L+G+ L LN I+D G
Sbjct: 350 SIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKALSGMKQLTRLNAVDNNISDEGE 409
Query: 342 AALTSLTGLTHLDLF 356
+ + H+D++
Sbjct: 410 KYIREMNLADHVDIY 424
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 113/268 (42%), Gaps = 47/268 (17%)
Query: 245 CEKFSKIGSLKVLNLGFN---------------EITD----------ECLVHLKGLTNLE 279
CE + LK LN+ FN ++TD + HL L +L
Sbjct: 25 CEILDSMKELKKLNIEFNSKIDPSGFKYICSLEQLTDLYMTFCYFGFDIAKHLPSLKSLT 84
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L + IG EG + + L+ ++++ I + ++GL L LN+ A +IT
Sbjct: 85 YLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEITMD 144
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
G ++ + LT L + G I D GA ++ K L +L+I + + G K++ ++ ++
Sbjct: 145 GAKFISEMKQLTGLKIVGNNICDEGAKFISGMKQLTNLDIASNNIGENGAKYVSEMMNIR 204
Query: 400 LLNLSQNC------------NLTDKTL----------ELISGLTGLVSLNVSNSRITSAG 437
L++ N LTD + + IS L L+++ + IT G
Sbjct: 205 KLDIGFNSINDGVKCFGEMKQLTDLNVNSCCIGLDGTKYISSFNQLTHLSIAENLITPYG 264
Query: 438 LRHLKPLKNLRSLTLESCKVTANDIKRL 465
H+ +KNL L + ++ N ++ +
Sbjct: 265 AIHISQMKNLIKLDISDNRIRDNGVQSI 292
>gi|357134265|ref|XP_003568738.1| PREDICTED: uncharacterized protein LOC100844673 [Brachypodium
distachyon]
Length = 547
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 98/410 (23%), Positives = 178/410 (43%), Gaps = 39/410 (9%)
Query: 58 SLLSVDLSGSDVTDS-GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+ +DLSG+ D+ L +L L+ L C +++ + L L +
Sbjct: 73 SVEEIDLSGNIAVDAEWLAYLGSFRYLRVLKLADCKNVNNSAVWALSDLGGIH------- 125
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + +++ L L LD+ + G LK +L LN+ W + + + PL
Sbjct: 126 --MTDKTLRSLQVLTRLEHLDIWGSEITNEGASVLKAFTRLSFLNVSWTHV---TRLPPL 180
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSAL--GSLFYL 233
L +L + + D L+K T+ C + + S++ SL YL
Sbjct: 181 PNLQHLNMSNCTIHSIRDGDSEVNVPLEKFTV-----CAASFGNIFEVFSSIQGSSLLYL 235
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEG 292
+++ C LS+ F K+ ++ L+L F+ ITD + H+ + NL L+L + GI +
Sbjct: 236 DMSGCSLSN--LHIFEKMKHIEHLDLSFSRITDAAIQHVANIGMNLRHLSLKNTGITSQA 293
Query: 293 LVNLTG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
L G + NL S++L++T I D +L ++ + SL+ ++L TS+ G T
Sbjct: 294 PCILAGTVPNLSSLSLAYTEIDDSALAYISMMPSLRVIDLSH-----------TSIKGFT 342
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
+++ +I L + L SL + L+D + + ++ L L + L+D
Sbjct: 343 CVEVNSEKIPSMPP--LEHLMYLESLNLEDTALSDEVIPPLASFRAIKYLYLKSDF-LSD 399
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
L +S + L L + ++ +GL P LR L L C + D
Sbjct: 400 PALHALSSASNLTHLGFCGNILSDSGLLQFVPPAKLRVLDLSGCWILTGD 449
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 98/418 (23%), Positives = 177/418 (42%), Gaps = 57/418 (13%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS------- 54
LP ++ + L R L+ LE FR +++++ L V+ +W+ + S
Sbjct: 44 LPGQLADALLQRLAARRLLSPSLLEVFRH-SVEEIDLSGNIAVDAEWLAYLGSFRYLRVL 102
Query: 55 --------QGSSLLSV-DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
S++ ++ DL G +TD L L+ + L+ LD + +I++ G L+
Sbjct: 103 KLADCKNVNNSAVWALSDLGGIHMTDKTLRSLQVLTRLEHLDI-WGSEITNEGASVLKAF 161
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-----GLVNLKGLMKLESL 160
+ L+ L+ ++ + L NL L++ CT IH VN+ LE
Sbjct: 162 TRLSFLN------VSWTHVTRLPPLPNLQHLNMSNCT-IHSIRDGDSEVNVP----LEKF 210
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ C + + S + L + S + S + + ++ + L+L +T A
Sbjct: 211 TV--CAASFGNIFEVFSSIQGSSLLYLDMSGCSLSNLHIFEKMKHIEHLDLSFSRITDAA 268
Query: 221 LDSLSALGSLFYLNLNRCQLSDDG------CEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ ++ +G +NL L + G C + +L L+L + EI D L ++
Sbjct: 269 IQHVANIG----MNLRHLSLKNTGITSQAPCILAGTVPNLSSLSLAYTEIDDSALAYISM 324
Query: 275 LTNLESLNLDSCGIGD-----------EGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
+ +L ++L I + L L LES+NL T +SD + LA
Sbjct: 325 MPSLRVIDLSHTSIKGFTCVEVNSEKIPSMPPLEHLMYLESLNLEDTALSDEVIPPLASF 384
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
++K L L + ++D L AL+S + LTHL G ++DSG LR L++ G
Sbjct: 385 RAIKYLYLKSDFLSDPALHALSSASNLTHLGFCGNILSDSGLLQFVPPAKLRVLDLSG 442
>gi|281210637|gb|EFA84803.1| hypothetical protein PPL_01796 [Polysphondylium pallidum PN500]
Length = 739
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 141/287 (49%), Gaps = 34/287 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLL 209
G K+E LN+ + + I +D LS + +L+ + ++C TD G+ K ++ LT L
Sbjct: 335 GNAKIEELNLNYQHLIVSNDFLQNCLSRMYHLQKVSLVACFGFTDLGMENFKRMEHLTSL 394
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L C VT + SL + L L+L +++D G L
Sbjct: 395 ILTDCAVTNVSVKSLKQMVKLEELSLRNTKITDSG------------------------L 430
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLV-NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L L L+ L+L +C I DEG+ + T LE++NLS T +++ +++KL L L S
Sbjct: 431 TLLSSLVELKFLDLSACNITDEGITFAIPCFTKLETLNLSATSVTEKAIQKLTKL-PLVS 489
Query: 329 LNL-DARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLT 385
L L + I + L +T L LD+FG +I +G L+ NL L++ G L+
Sbjct: 490 LYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAGFVNLQRLPNLTVLKLPGRDSLS 549
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
DA + H+ L ++ L+LS N+T T+ ++ L L L++SN++
Sbjct: 550 DAHISHLNALQNVRRLDLSDYINIT--TIAPLNPLRYLCELSLSNTK 594
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 156/325 (48%), Gaps = 7/325 (2%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
+LQ + C +D G+E+ + + +LTSL + A+T +K+ ++ L +L L
Sbjct: 365 HLQKVSLVACFGFTDLGMENFKRMEHLTSLILT-DCAVTNVSVKSLKQMVKLEELSLRNT 423
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GL L L++L+ L++ CN + + T L++L +S + VT+ I L
Sbjct: 424 KITDSGLTLLSSLVELKFLDLSACNITDEGITFAIPCFTKLETLNLSATSVTEKAIQKLT 483
Query: 202 GLQKLTLLNLEGCPVTA-ACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L L L CP+ L ++ G +L L++ ++ G ++ +L VL L
Sbjct: 484 KL-PLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAGFVNLQRLPNLTVLKL 542
Query: 260 -GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
G + ++D + HL L N+ L+L S I + L L L ++LS T ISD S+
Sbjct: 543 PGRDSLSDAHISHLNALQNVRRLDL-SDYINITTIAPLNPLRYLCELSLSNTKISDDSID 601
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
+ G S+L LNLD ++ D G++ L SL+ L L L I L L SL
Sbjct: 602 SIIGCSNLVILNLDRTRVRDIGVSKLISLS-LHTLSLMATGIRGDCLTTLSQLITLTSLN 660
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNL 403
I + DA V + DL +LT ++L
Sbjct: 661 ISSNDIQDAKVLPLLDLPNLTYIDL 685
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 109/213 (51%), Gaps = 17/213 (7%)
Query: 252 GSLKVLNLGF------NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLES 304
++ LNL + N+ CL + +L+ ++L +C G D G+ N + +L S
Sbjct: 337 AKIEELNLNYQHLIVSNDFLQNCL---SRMYHLQKVSLVACFGFTDLGMENFKRMEHLTS 393
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+ L+ +++ S++ L + L+ L+L +ITD+GL L+SL L LDL ITD G
Sbjct: 394 LILTDCAVTNVSVKSLKQMVKLEELSLRNTKITDSGLTLLSSLVELKFLDLSACNITDEG 453
Query: 365 AAY-LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLT-DKTLELISGL- 420
+ + F L +L + +T+ K I+ L+ L L++L NC + +++L I+
Sbjct: 454 ITFAIPCFTKLETLNLSATSVTE---KAIQKLTKLPLVSLYLSNCPMIGNQSLFFITLFG 510
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
L L++ ++I AG +L+ L NL L L
Sbjct: 511 KTLKLLDIFGTKIGGAGFVNLQRLPNLTVLKLP 543
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 131/291 (45%), Gaps = 32/291 (10%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSF 113
Q L + L + +TDSGL L L+ LD + C I+D G+ + + L +L+
Sbjct: 411 QMVKLEELSLRNTKITDSGLTLLSSLVELKFLDLSAC-NITDEGITFAIPCFTKLETLNL 469
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERC-------------------------TRIHG-G 147
++T + ++ L LV L L C T+I G G
Sbjct: 470 SAT-SVTEKAIQKLTKL-PLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAG 527
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
VNL+ L L L + + ++D+ + L+ L N++ L +S + + IA L L+ L
Sbjct: 528 FVNLQRLPNLTVLKLPGRDSLSDAHISHLNALQNVRRLDLS-DYINITTIAPLNPLRYLC 586
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+L ++ +DS+ +L LNL+R ++ D G K + SL L+L I +
Sbjct: 587 ELSLSNTKISDDSIDSIIGCSNLVILNLDRTRVRDIGVSKLISL-SLHTLSLMATGIRGD 645
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
CL L L L SLN+ S I D ++ L L NL I+L T SL+
Sbjct: 646 CLTTLSQLITLTSLNISSNDIQDAKVLPLLDLPNLTYIDLRNTQAFTASLK 696
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 42/233 (18%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
+TE +++ L L L P + ++ + I G +L +D+ G+ + +G ++L+
Sbjct: 474 VTEKAIQKLTKLPLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAGFVNLQR 533
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR----------------------RNN 117
NL L +SD + HL L N+ L N
Sbjct: 534 LPNLTVLKLPGRDSLSDAHISHLNALQNVRRLDLSDYINITTIAPLNPLRYLCELSLSNT 593
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC---------NCI 168
I+ + + G NLV L+L+R TR+ G+ KL SL++ +C+
Sbjct: 594 KISDDSIDSIIGCSNLVILNLDR-TRVRDI-----GVSKLISLSLHTLSLMATGIRGDCL 647
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
T LS L L SL IS + + D+ + L L LT ++L A L
Sbjct: 648 TT-----LSQLITLTSLNISSNDIQDAKVLPLLDLPNLTYIDLRNTQAFTASL 695
>gi|430746592|ref|YP_007205721.1| WD40 repeat-containing protein [Singulisphaera acidiphila DSM
18658]
gi|430018312|gb|AGA30026.1| WD40 repeat-containing protein [Singulisphaera acidiphila DSM
18658]
Length = 830
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 103/192 (53%), Gaps = 14/192 (7%)
Query: 264 ITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
I D L HL L NLE L++ + I GL +L L L +NLS +G+SD ++ +LA
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLS-SGLSDKAVARLAP 691
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL----- 377
L LK L+LD + D+G+AAL +T LT L L ++TD+G + L+ + L
Sbjct: 692 LKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMVQMERLSLGNV 751
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQ--NCNLTDKTLELISGLTGLVSLNVSNSRITS 435
+ G GL A +K + L SL+ + ++Q LTD L + L L LN+ + +T
Sbjct: 752 SVRGPGL--ANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSVTD 809
Query: 436 AGL---RHLKPL 444
AG+ R +KPL
Sbjct: 810 AGMAAARKIKPL 821
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 98/214 (45%), Gaps = 32/214 (14%)
Query: 168 ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
I D+ ++ L+ L NL+ L I +++ G+A+L L KLT LNL
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLS-------------- 678
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
LSD + + + LK L+L ++ D + LKG+T L L+LD
Sbjct: 679 -----------SGLSDKAVARLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDET 727
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA------RQITDTG 340
+ D GL L G+ +E ++L + L L G+S LKSL+ A +TD G
Sbjct: 728 KVTDAGLSALKGMVQMERLSLGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAG 787
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L L +L L L+L +TD+G A R K L
Sbjct: 788 LVHLENLPALDFLNLGETSVTDAGMAAARKIKPL 821
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
I G++ A L+NL L + + RI G GL +L L KL LN+ + ++D +
Sbjct: 630 EEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL--SSGLSDKAVA 687
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ L LK L + + + DSG+A LKG+ LT L+L+ VT A L +L + + L+
Sbjct: 688 RLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMVQMERLS 747
Query: 235 LNRCQLSDDGCEKFSKIGSLK------VLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L + G + LK V + +TD LVHL+ L L+ LNL +
Sbjct: 748 LGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSV 807
Query: 289 GDEGLV 294
D G+
Sbjct: 808 TDAGMA 813
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 9/192 (4%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ D+GL HL NL+ L + +I GL HL L LT L+ ++ ++ + + A
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL--SSGLSDKAVARLA 690
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L +L L+ G+ LKG+ L L++ +TD+ + L G+ ++ L +
Sbjct: 691 PLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETK-VTDAGLSALKGMVQMERLSLG 749
Query: 189 CSKVTDSGIAYLKGLQKLTLLNL------EGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
V G+A LKG+ +L L+ + P+T A L L L +L +LNL ++D
Sbjct: 750 NVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSVTD 809
Query: 243 DGCEKFSKIGSL 254
G KI L
Sbjct: 810 AGMAAARKIKPL 821
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S ++D + L L+ L + + D G+ L+G++ LT LS +T G+ A
Sbjct: 679 SGLSDKAVARLAPLKELKRLSLDHT-DLRDSGMAALKGMTTLTELSLDETK-VTDAGLSA 736
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-----NCITDSDMKPLSGLTN 181
G++ + +L L + GL NLKG+ +L+SL+ + +TD+ + L L
Sbjct: 737 LKGMVQMERLSLGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPA 796
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTL 208
L L + + VTD+G+A + ++ L L
Sbjct: 797 LDFLNLGETSVTDAGMAAARKIKPLIL 823
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 327 KSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGL 384
K L +D+ + I D GL L L L L + ARI G A+L L L + G L
Sbjct: 623 KDLRIDSEEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLSSG-L 681
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
+D V + L L L+L + +L D + + G+T L L++ +++T AGL LK +
Sbjct: 682 SDKAVARLAPLKELKRLSL-DHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGM 740
Query: 445 KNLRSLTLESCKVTA------NDIKRLQSRDLPNLVSFRP 478
+ L+L + V + RL+S + ++P
Sbjct: 741 VQMERLSLGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKP 780
>gi|290994276|ref|XP_002679758.1| predicted protein [Naegleria gruberi]
gi|284093376|gb|EFC47014.1| predicted protein [Naegleria gruberi]
Length = 205
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 25/225 (11%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+ L LN++ + D+ + S++ L L++ N I DE +L + L SLN+
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
IGDEG ++ L S+N+ FT I + ++ + L SLN+ +I G ++
Sbjct: 61 EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ LT LD+ G RI D GA + K L SL+I + D G K I ++
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQ--------- 171
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
L+SLN+ +RI G++++ +K L SLT
Sbjct: 172 ----------------LISLNIRGNRIGDEGVKYISEMKQLTSLT 200
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++L LN+ G +S + L L+++ ++ D+G + S++ L LN+G N
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
EI DE + L SLN+ IG E ++ + L S+N+S I + ++
Sbjct: 61 EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L SL++ +I D G ++ + LT LD+ RI D GA ++ K L SL I G
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGN 180
Query: 383 GLTDAGVKHIKDLSSLTLL 401
+ D GVK+I ++ LT L
Sbjct: 181 RIGDEGVKYISEMKQLTSL 199
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 96/203 (47%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL IS ++ D + +++LT L++ G + LS + L LN+
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ D+G + S+ L LN+ F +I E + + L SLN+ I EG ++
Sbjct: 61 EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+++S I D + ++ + L SL++ +I D G ++ + L L++ G
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGN 180
Query: 359 RITDSGAAYLRNFKNLRSLEICG 381
RI D G Y+ K L SL G
Sbjct: 181 RIGDEGVKYISEMKQLTSLTYKG 203
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L SLN+ + D ++ + LT LD+ G RI D GA YL K L SL I
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
+ D G K I + L LN+ C + + +LIS + L SLN+S++RI G +
Sbjct: 61 EIGDEGAKLISETRQLASLNI---CFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKW 117
Query: 441 LKPLKNLRSLTLESCKV------TANDIKRLQSRDLP 471
+ ++ L SL + ++ T +++K+L S D+
Sbjct: 118 ISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDIS 154
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 33/226 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+S+++SG++ D + + L SLD + +I D G ++L + L SL+ N
Sbjct: 4 LISLNISGNEFGDEEAKLISEMKQLTSLDISGN-RIGDEGAKYLSEMKQLISLNIGENE- 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---SDMKP 175
I +G K + TR +L SLNI C T + K
Sbjct: 62 IGDEGAKLIS------------ETR------------QLASLNI----CFTQIGIEEAKL 93
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+S + L SL IS +++ G ++ +++LT L++ G + ++S + L L++
Sbjct: 94 ISEMRQLTSLNISDNRICVEGAKWISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDI 153
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ ++ D+G + S++ L LN+ N I DE + ++ + L SL
Sbjct: 154 SYNRIGDEGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLTSL 199
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 3/166 (1%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G L + +L SLNI N I D K +S L SL I +++ + +++L
Sbjct: 42 GAKYLSEMKQLISLNI-GENEIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQL 100
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T LN+ + +S + L L+++ ++ D+G + S++ L L++ +N I D
Sbjct: 101 TSLNISDNRICVEGAKWISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGD 160
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
E + + L SLN+ IGDEG+ ++ + L S L++ G+
Sbjct: 161 EGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLTS--LTYKGL 204
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF----------------------NFC 91
S+ L S+D+SG+ + D G +L + L SL+ N C
Sbjct: 23 SEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGENEIGDEGAKLISETRQLASLNIC 82
Query: 92 I-QISDGGLEHLRGLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
QI G+E + +S LTSL+ +N I +G K + + L LD+ G
Sbjct: 83 FTQI---GIEEAKLISEMRQLTSLNI-SDNRICVEGAKWISEMRQLTSLDISGNRIGDEG 138
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+ + +L SL+I + N I D K +S + L SL I +++ D G+ Y+ +++LT
Sbjct: 139 AKTISEMKQLTSLDISY-NRIGDEGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLT 197
Query: 208 LLNLEG 213
L +G
Sbjct: 198 SLTYKG 203
>gi|320169763|gb|EFW46662.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 684
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 135/297 (45%), Gaps = 7/297 (2%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N T SGLT L SL +S + +T + GL LT L+L G P+T ++ +
Sbjct: 43 NLFTSVAANAFSGLTALNSLFLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIPDNTFT 102
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVHLKGLTNLESLN 282
L +L L++ Q++ F+ + L+VL+L N+IT+ L LT L N
Sbjct: 103 GLTALTRLDVYVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTRLSLFN 162
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+ I +L+ LT L+ L+ ++ S GL+ L L+L + +IT A
Sbjct: 163 NNITSIPASAFADLSALTYLD---LAGNQMTSLSANAFIGLTELTYLSLTSNEITSISPA 219
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
A T LT LT L L I A +L L + +T L SLT L+
Sbjct: 220 AFTGLTALTELVLENNLIASISANDFAGLTSLNLLRMRNNQITSLSANGFAGLPSLTELD 279
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
L N +T +GLT L L+V N++ITS L +L +L LES ++T+
Sbjct: 280 LDLNL-MTSIDASAFAGLTSLNLLSVQNNQITSISANGFAGLPSLTALGLESNQITS 335
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 154/359 (42%), Gaps = 7/359 (1%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
GL+ L SL F NN IT+ + AF+GL L +L L T I GL L
Sbjct: 53 FSGLTALNSL-FLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIPDN--TFTGLTALTR 109
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++ + I +GL L+ L ++ +++T+ GL LT L+L +T+
Sbjct: 110 LDV-YVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTRLSLFNNNITSI 168
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ + L +L YL+L Q++ F + L L+L NEIT GLT L
Sbjct: 169 PASAFADLSALTYLDLAGNQMTSLSANAFIGLTELTYLSLTSNEITSISPAAFTGLTALT 228
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L++ I + GLT+L + + I+ S AGL SL L+LD +T
Sbjct: 229 ELVLENNLIASISANDFAGLTSLNLLRMRNNQITSLSANGFAGLPSLTELDLDLNLMTSI 288
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
+A LT L L + +IT A +L +L + +T L+SL
Sbjct: 289 DASAFAGLTSLNLLSVQNNQITSISANGFAGLPSLTALGLESNQITSISANAFAGLTSLN 348
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L L N +T + + +T L L++ ++ITS L + L L S T
Sbjct: 349 FLRLEGN-QITSISANAFAAVTSLSVLSLHFNQITSFSANAFTGLTTMMYLLLNSNPFT 406
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 112/265 (42%), Gaps = 35/265 (13%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+G PVT L +LNL + FS + +L L L N IT +
Sbjct: 29 DGIPVTTTDLR--------LHLNL----FTSVAANAFSGLTALNSLFLSNNPITSIAVNA 76
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
GLT L L+L + TGLT L +++ T I+ S AGL L+ L+L
Sbjct: 77 FSGLTALTQLSLAGNPLTTIPDNTFTGLTALTRLDVYVTQIASISASAFAGLPVLEVLSL 136
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+ QIT+ T LT LT L LF IT A+ + L L++ G +T
Sbjct: 137 NDNQITNIASNTFTGLTALTRLSLFNNNITSIPASAFADLSALTYLDLAGNQMTSLSANA 196
Query: 392 IKDLSSLTLLNLSQN-------------CNLTDKTLE--LISGLT-----GLVSLN---V 428
L+ LT L+L+ N LT+ LE LI+ ++ GL SLN +
Sbjct: 197 FIGLTELTYLSLTSNEITSISPAAFTGLTALTELVLENNLIASISANDFAGLTSLNLLRM 256
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLE 453
N++ITS L +L L L+
Sbjct: 257 RNNQITSLSANGFAGLPSLTELDLD 281
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 132/327 (40%), Gaps = 36/327 (11%)
Query: 15 VYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQG----SSLLSVDLSGSDVT 70
VY + +S AF + ++ +ND + IAS ++L + L +++T
Sbjct: 112 VYVTQIASISASAFAGLPVLEVL-----SLNDNQITNIASNTFTGLTALTRLSLFNNNIT 166
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D S L LD Q++ GL+ LT LS N IT+ AF GL
Sbjct: 167 SIPASAFADLSALTYLDLA-GNQMTSLSANAFIGLTELTYLSLTSNE-ITSISPAAFTGL 224
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
L +L LE N I +GLT+L L++ +
Sbjct: 225 TALTELVLEN-------------------------NLIASISANDFAGLTSLNLLRMRNN 259
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++T GL LT L+L+ +T+ + + L SL L++ Q++ F+
Sbjct: 260 QITSLSANGFAGLPSLTELDLDLNLMTSIDASAFAGLTSLNLLSVQNNQITSISANGFAG 319
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ SL L L N+IT GLT+L L L+ I +T+L ++L F
Sbjct: 320 LPSLTALGLESNQITSISANAFAGLTSLNFLRLEGNQITSISANAFAAVTSLSVLSLHFN 379
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQIT 337
I+ S GL+++ L L++ T
Sbjct: 380 QITSFSANAFTGLTTMMYLLLNSNPFT 406
>gi|41393121|ref|NP_958890.1| F-box and leucine-rich repeat protein 14a [Danio rerio]
gi|37681873|gb|AAQ97814.1| hypothetical protein MGC40195 [Danio rerio]
gi|66911816|gb|AAH96775.1| F-box and leucine-rich repeat protein 14a [Danio rerio]
gi|157423043|gb|AAI53540.1| Fbxl14a protein [Danio rerio]
gi|182891432|gb|AAI64514.1| Fbxl14a protein [Danio rerio]
Length = 411
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 166/327 (50%), Gaps = 32/327 (9%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIKKVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQDIPSLRI 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
LN+ C ITDS + ++ L NL+ L + CS +T++G+ + GL L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRH 181
Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
V+ + L+ + +L +L L CQ L+D + SK + LKVLNL F I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFT-GISDGSLRKLA 321
+D ++HL +T L +LNL SC I D G+++L+ G L +++SF + D SL +A
Sbjct: 242 SDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIA 301
Query: 322 -GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLR-NFKNLRSL 377
GL LKSL+L + I+D G+ + + L L++ RITD G + + L +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGI 361
Query: 378 EICG-GGLTDAGVKHIKDLSSLTLLNL 403
++ G +T G++ I L L +LNL
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNL 388
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 182/362 (50%), Gaps = 74/362 (20%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++LSG ++TD+GL H ++D +L+ L+ + C QI+D L +
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRI--------------- 138
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AQ +K NL LDL C+ I G L+ GL L+SLN++ C ++D +
Sbjct: 139 ---AQYLK------NLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 189
Query: 176 LSGLT--------NLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
L+G+T L+ L + C K+TD + ++ KGL KL +LNL C ++ A + L
Sbjct: 190 LAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHL 249
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
S + L+ LNL C +SD G S +G+L++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMTQLWTLNLRSCDNISDTGIMHLS-MGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLK 308
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITD 338
SL+L SC I D+G IN R + + LK+LN+ +ITD
Sbjct: 309 SLSLCSCHISDDG------------IN-----------RMVRQMHELKTLNIGQCVRITD 345
Query: 339 TGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
GL + LT LT +DL+G +IT G + L+ L + +T+ VK + D S
Sbjct: 346 KGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE--VKGLGDAS 403
Query: 397 SL 398
+
Sbjct: 404 EI 405
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 142/285 (49%), Gaps = 33/285 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G S++T++GL+ + NL+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G + L L L+ C ++ L ++ KGL KL+
Sbjct: 190 LAGMTR-----------------SAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T L +L + SC ++D+GI +L G +L L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKV 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + LK LN+G ITD+ L
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLEL 350
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISD 314
+ LT L ++L C I GL +T L L+ +NL +++
Sbjct: 351 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 395
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 130/253 (51%), Gaps = 42/253 (16%)
Query: 233 LNLNRC-QLSDDGC-EKFSK-IGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG 287
LNL+ C L+D+G F + I SL++LNL +ITD L + + L NLE L+L C
Sbjct: 95 LNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRIAQYLKNLELLDLGGCS 154
Query: 288 -IGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLAGLS--------SLKSLNL-DARQ 335
I + GL+ + GL NL+S+NL S +SD + LAG++ +L+ L L D ++
Sbjct: 155 NITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQK 214
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+TD L ++ GL L + +L CGG ++DAG+ H+ +
Sbjct: 215 LTDLSLKHISK--GLNKLKVL-------------------NLSFCGG-ISDAGMIHLSHM 252
Query: 396 SSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTL 452
+ L LNL N++D + L G L L+VS ++ L ++ + L L+SL+L
Sbjct: 253 TQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSL 312
Query: 453 ESCKVTANDIKRL 465
SC ++ + I R+
Sbjct: 313 CSCHISDDGINRM 325
>gi|83747318|ref|ZP_00944359.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|207739111|ref|YP_002257504.1| type III effector protein gala2 [Ralstonia solanacearum IPO1609]
gi|83726018|gb|EAP73155.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|206592484|emb|CAQ59390.1| type III effector protein gala2 [Ralstonia solanacearum IPO1609]
Length = 978
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 177/388 (45%), Gaps = 8/388 (2%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL L L+SLD + +I D ++ L ++LTSL+
Sbjct: 575 SVRHLDLSGCTGSAVSEAGLAVLARLP-LESLDLS-GTRIGDREVQALASSTSLTSLNLS 632
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L L++ G+ L L SL ++ I ++ +
Sbjct: 633 -GNRIGNAGAQALGRNTVLTALNVSANPIGDAGVQALADSRSLTSLELRGIG-IGEAGIA 690
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ T L+SL IS + +++ A L Q L L C +T + L+ + SL L
Sbjct: 691 ALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNSMAQQLARIRSLRTLE 750
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + D G ++ SL+ LNL N IT + L L+ L SL++ G GD G +
Sbjct: 751 VGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSGIGCGDRGAL 810
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+ L S+ L F GI + LA +L SL+L I AL + LT L+
Sbjct: 811 LLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTIDVDAAKALANTGCLTSLN 870
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ ++ D A+ L L SL++ L+ + + ++LT LN+S N D
Sbjct: 871 VSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAGNATLTSLNISHNHIGPDGAQ 930
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLK 442
L + L SL+ + I AG R L+
Sbjct: 931 ALAESPS-LTSLDARANGIGEAGARALE 957
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 155/351 (44%), Gaps = 28/351 (7%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + ++G L + L +L+ + I D G++ L
Sbjct: 612 IGDREVQALASS-TSLTSLNLSGNRIGNAGAQALGRNTVLTALNVS-ANPIGDAGVQALA 669
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+LTSL R I G+ A A L LD+ L L SL
Sbjct: 670 DSRSLTSLELR-GIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKAN 728
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C +T+S + L+ + +L++L++ + + D+G+ + L LNL P+T L
Sbjct: 729 ACG-LTNSMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRP 787
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI---------TDECLVHL-- 272
L +L L+++ D G SK +L L LGFN I + L+ L
Sbjct: 788 LELSRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDL 847
Query: 273 ----------KGLTN---LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
K L N L SLN+ C + DE L L S+++S +S + R
Sbjct: 848 RGNTIDVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARA 907
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
LAG ++L SLN+ I G AL LT LD I ++GA L N
Sbjct: 908 LAGNATLTSLNISHNHIGPDGAQALAESPSLTSLDARANGIGEAGARALEN 958
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 5/225 (2%)
Query: 229 SLFYLNLNRC---QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
S+ +L+L+ C +S+ G +++ L+ L+L I D + L T+L SLNL
Sbjct: 575 SVRHLDLSGCTGSAVSEAGLAVLARL-PLESLDLSGTRIGDREVQALASSTSLTSLNLSG 633
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
IG+ G L T L ++N+S I D ++ LA SL SL L I + G+AAL
Sbjct: 634 NRIGNAGAQALGRNTVLTALNVSANPIGDAGVQALADSRSLTSLELRGIGIGEAGIAALA 693
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
S T L LD+ +++ AA L + L SL+ GLT++ + + + SL L +
Sbjct: 694 SNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNSMAQQLARIRSLRTLEVGS 753
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
N ++ D + I+ L +LN+S++ IT GLR L+ + L SL
Sbjct: 754 N-SIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSL 797
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 93/236 (39%), Gaps = 27/236 (11%)
Query: 200 LKGLQK-LTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
LK L L L+L C A ++++ L L LN+ + DDG + SL+
Sbjct: 122 LKALPATLRHLDLSACTGGAKSFEAIAYLAGLPLESLNVAGADIGDDGARLLAANPSLRA 181
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG---LVNLTGLTNLESINLSFTGIS 313
LN I L L SL+L GIGDEG L + LTNL +N T
Sbjct: 182 LNAANGGIGAAGARALAESPVLASLDLTRNGIGDEGARALADSRSLTNLAVLNCLVT--- 238
Query: 314 DGSLRKLAGLSSLKSLNL------------------DARQITDTGLAALTSLTGLTHLDL 355
D R LAG +L +L+L A +IT G AL LT L +
Sbjct: 239 DVGARALAGNGTLTALDLGNLITETGNELEQAGYDRTANEITARGAWALAQNRSLTSLSI 298
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
G D G L + L SL + +T A + LT L++ N L D
Sbjct: 299 QGNLCGDGGVQALAKNRTLTSLNVAYTDMTPASATELARNPVLTSLSVRWNYGLGD 354
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 92/204 (45%), Gaps = 18/204 (8%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
E + +L GL LESLN+ IGD+G L +L ++N + GI R LA L
Sbjct: 145 EAIAYLAGLP-LESLNVAGADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVL 203
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI------C 380
SL+L I D G AL LT+L + +TD GA L L +L++
Sbjct: 204 ASLDLTRNGIGDEGARALADSRSLTNLAVLNCLVTDVGARALAGNGTLTALDLGNLITET 263
Query: 381 GGGLTDAGV-KHIKDLSSLTLLNLSQNCNLT----------DKTLELISGLTGLVSLNVS 429
G L AG + ++++ L+QN +LT D ++ ++ L SLNV+
Sbjct: 264 GNELEQAGYDRTANEITARGAWALAQNRSLTSLSIQGNLCGDGGVQALAKNRTLTSLNVA 323
Query: 430 NSRITSAGLRHLKPLKNLRSLTLE 453
+ +T A L L SL++
Sbjct: 324 YTDMTPASATELARNPVLTSLSVR 347
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 352 HLDL---FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
HLDL G+ ++++G A L L SL++ G + D V+ + +SLT LNLS N
Sbjct: 578 HLDLSGCTGSAVSEAGLAVLARLP-LESLDLSGTRIGDREVQALASSTSLTSLNLSGN-R 635
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ + + + T L +LNVS + I AG++ L ++L SL L + I L S
Sbjct: 636 IGNAGAQALGRNTVLTALNVSANPIGDAGVQALADSRSLTSLELRGIGIGEAGIAALAS 694
>gi|77556733|gb|ABA99529.1| Leucine Rich Repeat family protein, expressed [Oryza sativa
Japonica Group]
Length = 488
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 122/431 (28%), Positives = 199/431 (46%), Gaps = 84/431 (19%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
C L+ L +C +ISD G++ L + L SL I+ +K+
Sbjct: 10 CPRLEKLSLKWCREISDIGIDLLSKKCHELRSLD------------------ISYLKVGN 51
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSG 196
E L ++ L KLE L + C+CI D ++ L G +L+S+ +S C VT G
Sbjct: 52 E-------SLRSISSLEKLEELAMVCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQG 104
Query: 197 IA------------------------YLKGLQKL----TLLNLEGCPVTAACLDSLSALG 228
+A +L L KL T+L L+G V+++ L ++
Sbjct: 105 LASLIDGHNFLQKLNAADSLHEMRQSFLSNLAKLKDTLTVLRLDGLEVSSSVLLAIGGCN 164
Query: 229 SLFYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNL---------GFNEITDECLVHLKGLTN 277
+L + L++C ++D+G ++ L+V++L + I + C +
Sbjct: 165 NLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSIAENCKM------- 217
Query: 278 LESLNLDSCG-IGDEGLVNL-TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-AR 334
+E L L+SC I ++GL + T NL+ I+L+ G++D +L+ LA S L L L
Sbjct: 218 VEHLRLESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCS 277
Query: 335 QITDTGLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGVK 390
I+D GLA ++S G L LDL+ ITD G A L N K ++ L +C +TD+G+
Sbjct: 278 SISDKGLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDSGLG 337
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NL 447
H+ L LT L L +T + ++ G L+ +++ + AGL L NL
Sbjct: 338 HLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRCYSVDDAGLWALARYALNL 397
Query: 448 RSLTLESCKVT 458
R LT+ C+VT
Sbjct: 398 RQLTISYCQVT 408
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 127/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
+++K ++ IA+ +L +DL+ V D+ L HL CS L L C ISD GL +
Sbjct: 229 ISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFIS 288
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A A G K++ LN+
Sbjct: 289 SSCGKLIELDLYRCNSITDDGLAALA-----------------------NGCKKIKMLNL 325
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITDS + L L L +L++ C ++T GI+ V C
Sbjct: 326 CYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGIS----------------SVAIGC- 368
Query: 222 DSLSALGSLFYLNLNRCQLSDD-GCEKFSKIG-SLKVLNLGFNEITDECLVHLKGLTNLE 279
+L ++L RC DD G ++ +L+ L + + ++T L HL L++L
Sbjct: 369 ------KNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 420
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L D +V+L+ ++ +E ++ + G L+KL LS LKS+
Sbjct: 421 CLQ-------DVKMVHLSWVS-IEGFEMALRA-ACGRLKKLKMLSGLKSV 461
>gi|326201424|ref|ZP_08191295.1| Dockerin type 1 [Clostridium papyrosolvens DSM 2782]
gi|325988024|gb|EGD48849.1| Dockerin type 1 [Clostridium papyrosolvens DSM 2782]
Length = 1098
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 135/477 (28%), Positives = 214/477 (44%), Gaps = 69/477 (14%)
Query: 10 IFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
I +L + + F D L+ + G +N D++ + SS+ S+ ++
Sbjct: 18 ILTQLFVHNAFADSDIVTFADPNLEAVVRG---AINKPTGDILKTDVSSITSIIAENKNI 74
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
+ L ++ +NL L + +ISD + L GL++L L+ ++N + A AG
Sbjct: 75 NN--LTGIECLTNLTMLSLSKN-KISD--VTPLAGLTSLKYLALYQSNI---SNINALAG 126
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
LINL LDL + + LK + KL L + W N +D+ LS LTNL+ LQ+ C
Sbjct: 127 LINLEYLDLGMNSV--SDISALKNMTKLTYLELSWNNI---TDISALSKLTNLQYLQLGC 181
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++ D I+ + L KL L+L ++ + LS L +L YL+LN +S+ +
Sbjct: 182 NRIVD--ISPISNLTKLKTLHLFYNRISD--ISGLSGLKTLTYLHLNSNNVSN--INPLN 235
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLS 308
+ L L+LGFN+ITD + L LT + L+L I + L NLT L +L+ N
Sbjct: 236 GLTMLSYLDLGFNKITD--ISALNKLTKITDLDLSYNKITNINVLSNLTSLNDLKLENNP 293
Query: 309 FTGISD--GSLRKLAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGA 365
S G + KL K NL+ D LA A+ G D+
Sbjct: 294 INNYSPITGIISKLTK----KDFNLEPISFPDADLAKAVCHQLGKNSEDM---------- 339
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--------KTLELI 417
+ +E + DAG IK LS + Q CNL D + I
Sbjct: 340 --------IYKIEAPQITVLDAGNMEIKSLSG-----IEQLCNLKDLYLAGNELDNINPI 386
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA----NDIKRLQSRDL 470
S LT L +LN+ ++I+ L L+ L NL+ L L K++ +D+ L++ DL
Sbjct: 387 SALTSLEALNLEKNQISD--LNVLRNLHNLKYLILRDNKISDITPLSDLSSLKTLDL 441
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 178/375 (47%), Gaps = 43/375 (11%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D G+ + D S L+++ +++S + + LS LT+L + + + + + +
Sbjct: 134 DLGMNSVSDISALKNMTKLTYLELSWNNITDISALSKLTNLQYLQ---LGCNRIVDISPI 190
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
NL KL + + + ++ GL L++L N S++ PL+GLT L L + +
Sbjct: 191 SNLTKL--KTLHLFYNRISDISGLSGLKTLTYLHLNSNNVSNINPLNGLTMLSYLDLGFN 248
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
K+TD I+ L L K+T L+L +T ++ LS L S LN +L ++ +S
Sbjct: 249 KITD--ISALNKLTKITDLDLSYNKITN--INVLSNLTS-----LNDLKLENNPINNYSP 299
Query: 251 IGSL------KVLNLGFNEITD----ECLVHLKG------LTNLESLNLDSCGIGDEGLV 294
I + K NL D + + H G + +E+ + G+ +
Sbjct: 300 ITGIISKLTKKDFNLEPISFPDADLAKAVCHQLGKNSEDMIYKIEAPQITVLDAGNMEIK 359
Query: 295 NLTGLTNLESI-NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+L+G+ L ++ +L G ++ ++ L+SL++LNL+ QI+D L L +L L +L
Sbjct: 360 SLSGIEQLCNLKDLYLAGNELDNINPISALTSLEALNLEKNQISD--LNVLRNLHNLKYL 417
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
L +I+D L + +L++L++ LT+ K+LS L+NL + +L D
Sbjct: 418 ILRDNKISD--ITPLSDLSSLKTLDLSYNSLTNT-----KNLSK--LVNLYE-LHLDDNE 467
Query: 414 LELISGLTGLVSLNV 428
+ I+GL + L +
Sbjct: 468 INDINGLQNITKLKI 482
>gi|302754944|ref|XP_002960896.1| hypothetical protein SELMODRAFT_75506 [Selaginella moellendorffii]
gi|300171835|gb|EFJ38435.1| hypothetical protein SELMODRAFT_75506 [Selaginella moellendorffii]
Length = 637
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 199/432 (46%), Gaps = 55/432 (12%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQ + L G++D + +AS L ++D+S +++TD G+ L + +L+ L+ C
Sbjct: 171 LQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACS 230
Query: 93 QISDGGLEH------------LRGLSNL-------TSLSF---------RRNNAITAQGM 124
+ D GL R ++N+ SL F ++ + IT Q +
Sbjct: 231 NVGDAGLTRTSTSLLELDLSCCRSVTNVGISFLSKRSLQFLKLGFCSPVKKRSQITGQLL 290
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPL-SGLTN 181
+A L + L L C I G + G ++L L++ C +TDS M + G N
Sbjct: 291 EAVGKLTQIQTLKLAGC-EIAGDGLRFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKN 349
Query: 182 LKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL----GSLFYL 233
L+ L ++C +++T IA + L L +E C + +++ L L L
Sbjct: 350 LRKLDLTCCLDLTEITACNIA--RSSAGLVSLKIEACRILTE--NNIPLLMERCSCLEEL 405
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCG-IGDE 291
++ C + D G E +K LK L LGF +++D + H+ + ++L L+L G +GD
Sbjct: 406 DVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDA 465
Query: 292 GLVNL-TGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLT 348
G+ ++ G L +NLS+ I+D S+ ++ LS L+ L + R GL L
Sbjct: 466 GVASIAAGCRKLRILNLSYCPNITDASIVSISQLSHLQQLEI--RGCKGVGLEKKLPEFK 523
Query: 349 GLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L LDL I D G + + F NL+ L + +++A + + +L L + L Q
Sbjct: 524 NLVELDLKHCGIGDRGMTSIVHCFPNLQQLNLSYCRISNAALVMLGNLRCLQNVKLVQ-- 581
Query: 408 NLTDKTLELISG 419
+ D ++E+++
Sbjct: 582 -IGDVSIEVLAA 592
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 137/477 (28%), Positives = 204/477 (42%), Gaps = 106/477 (22%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFRRNNAITAQGMKAFA---------- 128
+ ++SLD + CI+I+D L + L+ L SL R T G+ A A
Sbjct: 65 TGIESLDLSSCIKITDEDLALVGELAGTRLRSLGLARMGGFTVAGIVALARDCSALVELD 124
Query: 129 ----------------GLINLVKLDLERCTRIH-GGLVNLK-GLMKLESLNIKWCNCITD 170
L NL KLDL C I GL L G KL+ + +K C I+D
Sbjct: 125 LRCCNSLGDLELAAVCQLGNLRKLDLTGCYMISDAGLGCLAAGCKKLQVVVLKGCVGISD 184
Query: 171 SDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALG 228
+ + L S L ++ +S +++TD G+ L L L +LNL C V A L S
Sbjct: 185 AGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTST-- 242
Query: 229 SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-------NEITDECLVHLKGLTNLES 280
SL L+L+ C+ +++ G SK SL+ L LGF ++IT + L + LT +++
Sbjct: 243 SLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFCSPVKKRSQITGQLLEAVGKLTQIQT 301
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFT---GISDG----------SLRKL------- 320
L L C I +GL G L+ +LS + G++D +LRKL
Sbjct: 302 LKLAGCEIAGDGL-RFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKNLRKLDLTCCLD 360
Query: 321 -------------AGLSSLK-----------------------SLNLDARQITDTGLAAL 344
AGL SLK L++ I D GL +
Sbjct: 361 LTEITACNIARSSAGLVSLKIEACRILTENNIPLLMERCSCLEELDVTDCNIDDAGLECI 420
Query: 345 TSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGVKHIK-DLSSLTLL 401
L L L +++D+G ++ RN +L L++ G + DAGV I L +L
Sbjct: 421 AKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDAGVASIAAGCRKLRIL 480
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKV 457
NLS N+TD ++ IS L+ L L + + GL + L KNL L L+ C +
Sbjct: 481 NLSYCPNITDASIVSISQLSHLQQLEIRGCK--GVGLEKKLPEFKNLVELDLKHCGI 535
>gi|149174147|ref|ZP_01852775.1| hypothetical protein PM8797T_13198 [Planctomyces maris DSM 8797]
gi|148847127|gb|EDL61462.1| hypothetical protein PM8797T_13198 [Planctomyces maris DSM 8797]
Length = 476
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 97/192 (50%), Gaps = 20/192 (10%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ +TD ++ + + L +S SKVTD+GI YL+G +L LNL G VT A L+ L
Sbjct: 265 SAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTEVTDATLEHLK 324
Query: 226 ALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKV-----------------LNLGFNEITDE 267
L L +NL Q+S G E + S+++ L L +T E
Sbjct: 325 GLPELHSVNLRGTQVSPRGVLELIASSDSMQIAFPGGWVWKLENAHGFQLKLSSPAVTGE 384
Query: 268 CLVHLKGLTNLES-LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L+ L G +++ L+LD + DEGL +L G +L ++ +S T IS L LAGL+SL
Sbjct: 385 -LLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLRTLRISNTQISSAGLNHLAGLASL 443
Query: 327 KSLNLDARQITD 338
+ L+L + D
Sbjct: 444 RELDLRGSAVAD 455
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 18/190 (9%)
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+ +L ++D F+ + L L +++TD + +L+G T L SLNL + D
Sbjct: 259 FESLGHSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTEVTDA 318
Query: 292 GLVNLTGLTNLESINLSFTGISD-GSLRKLAGLSSLK-----------------SLNLDA 333
L +L GL L S+NL T +S G L +A S++ L L +
Sbjct: 319 TLEHLKGLPELHSVNLRGTQVSPRGVLELIASSDSMQIAFPGGWVWKLENAHGFQLKLSS 378
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+T L ++ +LDL G +TD G A L F++LR+L I ++ AG+ H+
Sbjct: 379 PAVTGELLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLRTLRISNTQISSAGLNHLA 438
Query: 394 DLSSLTLLNL 403
L+SL L+L
Sbjct: 439 GLASLRELDL 448
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 23/246 (9%)
Query: 22 EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS 81
E+S+ FRD + L + V D+ + + + + + LS S VTD+G+ +L+ +
Sbjct: 248 EISMVEFRDTGFESLG---HSAVTDQILRDF-NYWNKVSGLWLSRSKVTDAGIEYLRGAT 303
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L SL+ + +++D LEHL+GL L S++ R ++ +G ++ L+
Sbjct: 304 RLYSLNLS-GTEVTDATLEHLKGLPELHSVNLR-GTQVSPRG------VLELIASSDSMQ 355
Query: 142 TRIHGGLVNLKGLMKLES---LNIKWCNCITDSDMKPLSGLTNLKS-LQISCSKVTDSGI 197
GG V KLE+ +K + ++ L G +++ L + +TD G+
Sbjct: 356 IAFPGGWV-----WKLENAHGFQLKLSSPAVTGELLKLFGTVRVQAYLDLDGIALTDEGL 410
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A L G + L L + +++A L+ L+ L SL L+L ++D+ K + +L
Sbjct: 411 ASLGGFEDLRTLRISNTQISSAGLNHLAGLASLRELDLRGSAVADEDINKLQR--ALPNC 468
Query: 258 NLGFNE 263
+ +NE
Sbjct: 469 KIDWNE 474
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%)
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
+FT I+ G + +L +TD L ++ L L +++TD+G Y
Sbjct: 239 AFTTIAAGDEISMVEFRDTGFESLGHSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEY 298
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
LR L SL + G +TDA ++H+K L L +NL LELI+
Sbjct: 299 LRGATRLYSLNLSGTEVTDATLEHLKGLPELHSVNLRGTQVSPRGVLELIA 349
>gi|300704109|ref|YP_003745711.1| leucine-rich-repeat type III effector protein (gala5) [Ralstonia
solanacearum CFBP2957]
gi|299071772|emb|CBJ43096.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum CFBP2957]
Length = 535
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 172/364 (47%), Gaps = 13/364 (3%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES------LNIKWCNCITDSDMKP 175
QG+ AG+ +L +L L R + G + L G+ +L + L++ C I + +
Sbjct: 152 QGLITAAGIAHLSRLPLVRLN-LSGNRIGLAGVQRLANHPTLTELDVSRCG-IGPEEARA 209
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L +L S + V G+ L G + LT L+L + A L + L LN+
Sbjct: 210 LAASARLTTLNASHNGVGSEGVQALVGCKTLTSLDLSDNGLGDAEAQRLGSSERLTTLNV 269
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
NR ++ G + +L L++G N I D + L L +LN++ IG G+
Sbjct: 270 NRNRIDVQGARALAACKTLTSLDIGGNSIGDAGVNALVANAQLTTLNVERAEIGAHGVQA 329
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L L S+ + I D LA +SL +L+ ++ I TG AL + T LT L+L
Sbjct: 330 LADCKTLTSLRIDNNNIGDEGANTLAASTSLTTLHSESNGIGPTGAQALAANTRLTTLNL 389
Query: 356 FGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
I D+GA A+L N L L + GL+DA + +LT L+ S N + D
Sbjct: 390 GHNSIGDAGAQAWLAN-TTLVWLSVRRNGLSDACAIRLAASKTLTTLDASDNA-IKDAGA 447
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR-LQSRDLPNL 473
++ L +LNVS++ I +AG R L L+SL L + ++ ++ L +R L +L
Sbjct: 448 RALAANRTLTALNVSSNEIGNAGARALAANTMLKSLDLRNNRMLEAGVRALLANRTLSSL 507
Query: 474 -VSF 476
VSF
Sbjct: 508 GVSF 511
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 159/349 (45%), Gaps = 3/349 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ ++LSG+ + +G+ L + L LD + C I L + LT+L+ +N
Sbjct: 168 LVRLNLSGNRIGLAGVQRLANHPTLTELDVSRC-GIGPEEARALAASARLTTLNAS-HNG 225
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ ++G++A G L LDL L +L +LN+ N I + L+
Sbjct: 226 VGSEGVQALVGCKTLTSLDLSDNGLGDAEAQRLGSSERLTTLNVNR-NRIDVQGARALAA 284
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L SL I + + D+G+ L +LT LN+E + A + +L+ +L L ++
Sbjct: 285 CKTLTSLDIGGNSIGDAGVNALVANAQLTTLNVERAEIGAHGVQALADCKTLTSLRIDNN 344
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D+G + SL L+ N I L T L +LNL IGD G
Sbjct: 345 NIGDEGANTLAASTSLTTLHSESNGIGPTGAQALAANTRLTTLNLGHNSIGDAGAQAWLA 404
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
T L +++ G+SD +LA +L +L+ I D G AL + LT L++
Sbjct: 405 NTTLVWLSVRRNGLSDACAIRLAASKTLTTLDASDNAIKDAGARALAANRTLTALNVSSN 464
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
I ++GA L L+SL++ + +AGV+ + +L+ L +S NC
Sbjct: 465 EIGNAGARALAANTMLKSLDLRNNRMLEAGVRALLANRTLSSLGVSFNC 513
>gi|427735495|ref|YP_007055039.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
7116]
gi|427370536|gb|AFY54492.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
7116]
Length = 396
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 168/313 (53%), Gaps = 35/313 (11%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+KPLSGLTNL ++ + +K++D + L L LT LN+ G ++ + L++L +L
Sbjct: 84 SDLKPLSGLTNLTNIDLWGNKISD--VKPLVNLTNLTNLNIGGNKISD--VKPLASLTNL 139
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L+L ++SD + + +L L++ N+I+D + L+ L NL L + S I D
Sbjct: 140 TNLDLGGNKISD--VTPLASLTNLIRLDVYSNQISD--INSLENLNNLTFLRVGSNRIVD 195
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+ TNL + L ISD +R L+ L++L LNL + QI+D + + SL L
Sbjct: 196 --VKQFANFTNLTELWLEENQISD--VRPLSSLNNLTKLNLMSNQISD--IKPIASLNSL 249
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN---LSQNC 407
LDL +I+D A L N NL +L GL + +IK LS+LT L L QN
Sbjct: 250 NSLDLDKNQISDIEA--LSNLTNLTTL-----GLDRNQIINIKPLSNLTKLRWLFLRQN- 301
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
++D ++ +S LT L L + +++I R +KPL NL L + +++N I +QS
Sbjct: 302 QISD--IKPLSSLTNLRWLELKSNKI-----RDVKPLTNLAK--LRNLNLSSNQITNVQS 352
Query: 468 -RDLPNLVSFRPE 479
+L NLV+F E
Sbjct: 353 LANLTNLVNFNVE 365
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 166/354 (46%), Gaps = 61/354 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SSL + L ++D L L +NL ++D + +ISD ++ L L+NLT+L+ N
Sbjct: 71 SSLTELRLLTKQISD--LKPLSGLTNLTNIDL-WGNKISD--VKPLVNLTNLTNLNIGGN 125
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+K A L NL LDL GG N I SD+ PL
Sbjct: 126 ---KISDVKPLASLTNLTNLDL-------GG------------------NKI--SDVTPL 155
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LTNL L + ++++D I L+ L LT L + + + + +L L L
Sbjct: 156 ASLTNLIRLDVYSNQISD--INSLENLNNLTFLRVGSNRIVD--VKQFANFTNLTELWLE 211
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVN 295
Q+SD S + +L LNL N+I+D + + L +L SL+LD I D E L N
Sbjct: 212 ENQISD--VRPLSSLNNLTKLNLMSNQISD--IKPIASLNSLNSLDLDKNQISDIEALSN 267
Query: 296 LTGLTNLESINLSFTGISDG---SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
LT LT L G+ +++ L+ L+ L+ L L QI+D + L+SLT L
Sbjct: 268 LTNLTTL--------GLDRNQIINIKPLSNLTKLRWLFLRQNQISD--IKPLSSLTNLRW 317
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L+L +I D L N LR+L + +T+ V+ + +L++L N+ +N
Sbjct: 318 LELKSNKIRD--VKPLTNLAKLRNLNLSSNQITN--VQSLANLTNLVNFNVEEN 367
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 137/280 (48%), Gaps = 47/280 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++DL G+ ++D + L +NL LD + QISD + L NL +L+F R
Sbjct: 137 TNLTNLDLGGNKISD--VTPLASLTNLIRLDV-YSNQISD-----INSLENLNNLTFLRV 188
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ +K FA NL +L LE N I SD++PL
Sbjct: 189 GSNRIVDVKQFANFTNLTELWLEE-------------------------NQI--SDVRPL 221
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S L NL L + ++++D I + L L L+L+ ++ +++LS L +L L L+
Sbjct: 222 SSLNNLTKLNLMSNQISD--IKPIASLNSLNSLDLDKNQISD--IEALSNLTNLTTLGLD 277
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R Q+ + + S + L+ L L N+I+D + L LTNL L L S I D + L
Sbjct: 278 RNQIIN--IKPLSNLTKLRWLFLRQNQISD--IKPLSSLTNLRWLELKSNKIRD--VKPL 331
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
T L L ++NLS I++ ++ LA L++L + N++ I
Sbjct: 332 TNLAKLRNLNLSSNQITN--VQSLANLTNLVNFNVEENPI 369
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 15/170 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QISD ++ + L++L SL +N ++A + L NL L L+R ++N+K
Sbjct: 236 QISD--IKPIASLNSLNSLDLDKN---QISDIEALSNLTNLTTLGLDR-----NQIINIK 285
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L L + SD+KPLS LTNL+ L++ +K+ D + L L KL LNL
Sbjct: 286 PLSNLTKLRWLFLRQNQISDIKPLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLNLS 343
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE-KFSKIGSLKVLNLGF 261
+T + SL+ L +L N+ ++ C + +K GS K+ + F
Sbjct: 344 SNQITN--VQSLANLTNLVNFNVEENPINTKSCPGRSTKCGSTKLKHRTF 391
>gi|343414369|emb|CCD21014.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 469
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 123/377 (32%), Positives = 193/377 (51%), Gaps = 44/377 (11%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+ L + C I+D + L LS+L +L IT + + L N V+LDL CT
Sbjct: 45 LEKLYLSHCTGITD--VPPLSKLSSLRTLDISHCTGIT--DVSPLSKLNNFVQLDLSHCT 100
Query: 143 RIHGGLVNLKGLMKLESLNIKW-CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
G+ ++ L L SL + + +C +D+ PLS L++L++L +S C+ + ++ L
Sbjct: 101 ----GITDVSPLSVLSSLRMLFFSHCTGITDVSPLSVLSSLRTLDLSYCTGI--KHVSPL 154
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
L L L+L C + LS L SL L+L+ C SK+ SL+ L+L
Sbjct: 155 SKLSSLEKLDLSHCTAIKH-VSPLSKLSSLCTLDLSYCTGIKHE-SPLSKLSSLRTLDLS 212
Query: 261 F-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSL 317
ITD + L L++L +L+L C GI D + L+ L++L +++LS TGI+D S
Sbjct: 213 HCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITDVS- 267
Query: 318 RKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLR 375
L+ LSSL++L+L ITD ++ L+ L+ L LDL ITD + L +LR
Sbjct: 268 -PLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLR 322
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G+TD V + +LSSL +L+LS +TD +S L+ L SL++
Sbjct: 323 MLYLSHCTGITD--VSPLSELSSLRMLDLSHCTGITD-----VSPLSELSSLHI------ 369
Query: 435 SAGLRHLKPLKNLRSLT 451
GL H + ++ LT
Sbjct: 370 -LGLSHCTGITDVSPLT 385
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 20/233 (8%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD L + S+L++LD +
Sbjct: 251 SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSH 305
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L L IT + + L +L LDL CT G+ +
Sbjct: 306 CTGITD--VSPLSELSSLRMLYLSHCTGIT--DVSPLSELSSLRMLDLSHCT----GITD 357
Query: 151 LKGLMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+ L +L SL+I +C +D+ PL+ + + L +S C+ +TD ++ L L L
Sbjct: 358 VSPLSELSSLHILGLSHCTGITDVSPLTTIIGFEKLYLSNCTGITD--VSPLSKLSSLRS 415
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
L+L C + LS L SL L+++ C D SK+ SL +L L
Sbjct: 416 LDLSHCTGITD-VSPLSELSSLRTLDISHCTGITD-VSPLSKLSSLHILGLSH 466
>gi|320163275|gb|EFW40174.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 989
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 125/464 (26%), Positives = 201/464 (43%), Gaps = 88/464 (18%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
+++ Q+ +LV + L++ ++ F C LQ + L YP
Sbjct: 460 QEVGMQLMAQLVRDKQLSDKNMGVFLPCHLQVIRLDAYPY-------------------- 499
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF---RRNNAIT 120
VT+ L ++ S LQ L ++ G+ H+ GL+NL L R N+
Sbjct: 500 -----VTNELLCAMRFFSLLQELSIRSAEFVTHVGINHIAGLNNLRVLDLGITRLND--- 551
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
Q M + L L L+LER L+ GL +L L G T
Sbjct: 552 -QAMPTISQL-PLTVLNLERT------LITDSGLARLAPL-----------------GAT 586
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L+ L IS CSK+T+ G+A L +L L + G P+T + LS L LNL R
Sbjct: 587 -LQHLDISDCSKLTERGLALLAAFPQLRTLAIAGLPLT--DVGRLSNFPELRSLNLARTA 643
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTG 298
+ + + + L L+L ++ D + +L+ LTNL SL L S IG+ + +++
Sbjct: 644 IVEGKLDSIRRYIHLVHLSLANTKLGDNDVRYLQYLTNLSSLKLPSRFQIGNSSIAHISK 703
Query: 299 LTNLESINLS-FTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L L ++L+ + ++D ++ ++ L+ +L SL+L ++T G+ A+ + T L L L
Sbjct: 704 LP-LTELDLTDYIHVTDEGIQFISALAPTLVSLSLSNTKLTSAGIPAVAACTKLEVLQLD 762
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+ D L LR+L + LT A V+
Sbjct: 763 RTPLKDDVIPLLAPLTRLRTLSLSRTHLTSAVVRS-----------------------GA 799
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
S T L SLN+S + I + GL L+ L L +L L+S +VTAN
Sbjct: 800 FSPFTRLESLNLSWTFIENQGLDQLR-LPMLTTLNLDSTRVTAN 842
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 160/320 (50%), Gaps = 14/320 (4%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHL 102
+ND+ M I+ ++L +L + +TDSGL L + LQ LD + C ++++ GL L
Sbjct: 549 LNDQAMPTISQLPLTVL--NLERTLITDSGLARLAPLGATLQHLDISDCSKLTERGLALL 606
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L +L+ + + + L L+L R + G L +++ + L L++
Sbjct: 607 AAFPQLRTLAI---AGLPLTDVGRLSNFPELRSLNLARTAIVEGKLDSIRRYIHLVHLSL 663
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNL-EGCPVTAAC 220
+ D+D++ L LTNL SL++ ++ +S IA++ L LT L+L + VT
Sbjct: 664 ANTK-LGDNDVRYLQYLTNLSSLKLPSRFQIGNSSIAHISKL-PLTELDLTDYIHVTDEG 721
Query: 221 LDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ +SAL +L L+L+ +L+ G + L+VL L + D+ + L LT L
Sbjct: 722 IQFISALAPTLVSLSLSNTKLTSAGIPAVAACTKLEVLQLDRTPLKDDVIPLLAPLTRLR 781
Query: 280 SLNLDSCGIGDEGLVN--LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
+L+L + + + + T LES+NLS+T I + L +L L L +LNLD+ ++T
Sbjct: 782 TLSLSRTHLTSAVVRSGAFSPFTRLESLNLSWTFIENQGLDQL-RLPMLTTLNLDSTRVT 840
Query: 338 DTGLAALTSLTGLTHLDLFG 357
LT L LT + + G
Sbjct: 841 ANVPLMLTQLPALTTVRMVG 860
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 33/232 (14%)
Query: 239 QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL 296
QLSD F L+V+ L + +T+E L ++ + L+ L++ S + G+ ++
Sbjct: 475 QLSDKNMGVFLPC-HLQVIRLDAYPYVTNELLCAMRFFSLLQELSIRSAEFVTHVGINHI 533
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDL 355
GL NL ++L T ++D ++ ++ L L LNL+ ITD+GLA L L L HLD+
Sbjct: 534 AGLNNLRVLDLGITRLNDQAMPTISQLP-LTVLNLERTLITDSGLARLAPLGATLQHLDI 592
Query: 356 FG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+++T+ G A L F LR+L I G LTD G
Sbjct: 593 SDCSKLTERGLALLAAFPQLRTLAIAGLPLTDVG-------------------------- 626
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+S L SLN++ + I L ++ +L L+L + K+ ND++ LQ
Sbjct: 627 -RLSNFPELRSLNLARTAIVEGKLDSIRRYIHLVHLSLANTKLGDNDVRYLQ 677
>gi|194755888|ref|XP_001960211.1| GF13252 [Drosophila ananassae]
gi|190621509|gb|EDV37033.1| GF13252 [Drosophila ananassae]
Length = 492
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 106/323 (32%), Positives = 162/323 (50%), Gaps = 65/323 (20%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 208 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 249
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 250 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 306
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 307 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 366
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 367 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 419
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 420 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 464
Query: 286 CGIGDEGLVNLT-GLTNLESINL 307
C I D G++ + L LE++N+
Sbjct: 465 CQITDHGMLKIAKALHELENLNI 487
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 131/281 (46%), Gaps = 60/281 (21%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
G+ LT LNL GC A ++ LG F ++L +LK L+L
Sbjct: 238 GVPALTSLNLSGC-FNVADMN----LGHAFSVDL----------------PNLKTLDLSL 276
Query: 262 -NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINL-SFTGISDGS 316
+ITD L + + L NLE+L L C I + GL+ + GL L+ +NL S ISD
Sbjct: 277 CKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG 336
Query: 317 LRKLAGLS--------SLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
+ LAG S L+ L L D ++++D L + GLT L
Sbjct: 337 IGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQ--GLTSLKSI----------- 383
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSL 426
+L C +TD+G+KH+ + L LNL N++D + L G +G+ SL
Sbjct: 384 --------NLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSL 434
Query: 427 NVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
+VS +I+ L H+ + L LRSL+L C++T + + ++
Sbjct: 435 DVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKI 475
>gi|242004502|ref|XP_002423122.1| fbxl14, putative [Pediculus humanus corporis]
gi|212506068|gb|EEB10384.1| fbxl14, putative [Pediculus humanus corporis]
Length = 461
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 164/317 (51%), Gaps = 44/317 (13%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S++LSG +VTD GL H + L L+ + C Q++D L + + L+NL L
Sbjct: 161 SLNLSGCYNVTDIGLSHAFVTTLPTLTELNLSLCKQVTDTSLGRIAQYLTNLEVLELGGC 220
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNIKWCN 166
+T G+ GL L +L+L C I G+ +L G LE L ++ C
Sbjct: 221 CNVTNTGLLLVGWGLKKLKRLNLRSCWHISDQGISHLAGPNPDVGDGNPALEYLGLQDCQ 280
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
++D ++ +S GLT LKS+ +S C +TDSG+ YL + L LNL C D++
Sbjct: 281 RLSDEALRHVSVGLTGLKSINLSFCVSITDSGLKYLAKMTSLRELNLRAC-------DNI 333
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLN 282
S LG + L++ G S+I SL V F ++I D+ L+H+ +GL +L+SL+
Sbjct: 334 SDLGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALLHVSQGLFHLKSLS 378
Query: 283 LDSCGIGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA-RQITD 338
L++C I D+G+V + L +LE++N+ I+D + + L L+ ++L +IT
Sbjct: 379 LNACNISDDGIVRIAITLHDLETLNIGQCWKITDRGVHTIVDSLKHLRCIDLYGCSKITT 438
Query: 339 TGLAALTSLTGLTHLDL 355
GL + L LT L+L
Sbjct: 439 VGLERIMKLPQLTTLNL 455
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 156/319 (48%), Gaps = 33/319 (10%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
++G+ L+SLN+ C +TD + ++ L L L +S C +VTD+ + + + L L
Sbjct: 153 VQGIPNLDSLNLSGCYNVTDIGLSHAFVTTLPTLTELNLSLCKQVTDTSLGRIAQYLTNL 212
Query: 207 TLLNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE 263
+L L GC L L L LNL C +SD G + G N
Sbjct: 213 EVLELGGCCNVTNTGLLLVGWGLKKLKRLNLRSCWHISDQGISHLA----------GPNP 262
Query: 264 ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKL 320
+ G LE L L C + DE L +++ GLT L+SINLSF I+D L+ L
Sbjct: 263 DVGD------GNPALEYLGLQDCQRLSDEALRHVSVGLTGLKSINLSFCVSITDSGLKYL 316
Query: 321 AGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYL-RNFKNLRS 376
A ++SL+ LNL A I+D G+A L + ++ LD+ F +I D ++ + +L+S
Sbjct: 317 AKMTSLRELNLRACDNISDLGMAYLAEGGSRISSLDVSFCDKIGDQALLHVSQGLFHLKS 376
Query: 377 LEICGGGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRI 433
L + ++D G+ I L L LN+ Q +TD+ + ++ L L +++ S+I
Sbjct: 377 LSLNACNISDDGIVRIAITLHDLETLNIGQCWKITDRGVHTIVDSLKHLRCIDLYGCSKI 436
Query: 434 TSAGLRHLKPLKNLRSLTL 452
T+ GL + L L +L L
Sbjct: 437 TTVGLERIMKLPQLTTLNL 455
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 149/325 (45%), Gaps = 78/325 (24%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTL 208
+G+ +++ L++K S + G+ NL SL +S C VTD G+ A++ L LT
Sbjct: 135 RGIRRVQVLSLK------RSLRDVVQGIPNLDSLNLSGCYNVTDIGLSHAFVTTLPTLTE 188
Query: 209 LNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
LNL C VT L ++ + NL +L GC + G L V G+
Sbjct: 189 LNLSLCKQVTDTSLGRIAQ----YLTNLEVLELG--GCCNVTNTGLLLV---GW------ 233
Query: 268 CLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
GL L+ LNL SC I D+G+ +L G + DG+ +L
Sbjct: 234 ------GLKKLKRLNLRSCWHISDQGISHLAGPN---------PDVGDGN-------PAL 271
Query: 327 KSLNL-DARQITDTGLAALT-SLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGG 383
+ L L D ++++D L ++ LTGL ++L F ITDSG
Sbjct: 272 EYLGLQDCQRLSDEALRHVSVGLTGLKSINLSFCVSITDSG------------------- 312
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL 441
+K++ ++SL LNL N++D + L G + + SL+VS +I L H+
Sbjct: 313 -----LKYLAKMTSLRELNLRACDNISDLGMAYLAEGGSRISSLDVSFCDKIGDQALLHV 367
Query: 442 -KPLKNLRSLTLESCKVTANDIKRL 465
+ L +L+SL+L +C ++ + I R+
Sbjct: 368 SQGLFHLKSLSLNACNISDDGIVRI 392
>gi|300697280|ref|YP_003747941.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum CFBP2957]
gi|299074004|emb|CBJ53541.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum CFBP2957]
Length = 1051
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 158/354 (44%), Gaps = 31/354 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + D+G L + L SL+ + I D G++ L
Sbjct: 685 IGDREVQALASS-ASLTSLNLSGNRIGDAGAQALGRNTVLTSLNVS-ANPIGDTGVQALA 742
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G +LTSL R I G+ A A L LD+ L L SL
Sbjct: 743 GSRSLTSLELR-GIRIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLTSLKAN 801
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C +T+ + L+ + +L++L++ + + D+G+ + L LNL P+T L
Sbjct: 802 DCG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRP 860
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI---------TDECLVH--L 272
L +L L+++R D G SK +L L LGFN I + L+ L
Sbjct: 861 LELSRTLTSLDVSRIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLTANRTLISLDL 920
Query: 273 KGLT-------------NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
+G T L SLN+ C + DE L L ++++S +S + R
Sbjct: 921 RGNTIDVAAATALAHTGRLGSLNVSDCKLDDEAASALAESLTLTALDVSMNRLSSQAARA 980
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
LAG ++L SLN+ I G AL T LT LD AR D G A R +N
Sbjct: 981 LAGNATLTSLNISHNHIGPDGAQALAESTSLTFLD---ARANDIGEAGARALEN 1031
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/388 (27%), Positives = 176/388 (45%), Gaps = 8/388 (2%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG + V+++GL L L SLD + +I D ++ L ++LTSL+
Sbjct: 648 SVRHLDLSGCTGAAVSEAGLADLAR-RPLASLDLSRT-RIGDREVQALASSASLTSLNLS 705
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L L++ G+ L G L SL ++ I ++ +
Sbjct: 706 -GNRIGDAGAQALGRNTVLTSLNVSANPIGDTGVQALAGSRSLTSLELRGIR-IGEAGIA 763
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ T L+SL IS + +++ A L Q LT L C +T L+ + SL L
Sbjct: 764 ALASNTVLRSLDISSNDLSEQSAAELARNQTLTSLKANDCGLTNGMAQQLARIRSLRTLE 823
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + D G ++ SL+ LNL N IT + L L+ L SL++ G GD G +
Sbjct: 824 VGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSRIGCGDRGAL 883
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+ L S+ L F GI + L +L SL+L I AL L L+
Sbjct: 884 LLSKNRALTSLKLGFNGIGSAGAQGLTANRTLISLDLRGNTIDVAAATALAHTGRLGSLN 943
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ ++ D A+ L L +L++ L+ + + ++LT LN+S N ++
Sbjct: 944 VSDCKLDDEAASALAESLTLTALDVSMNRLSSQAARALAGNATLTSLNISHN-HIGPDGA 1002
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ ++ T L L+ + I AG R L+
Sbjct: 1003 QALAESTSLTFLDARANDIGEAGARALE 1030
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 115/226 (50%), Gaps = 8/226 (3%)
Query: 229 SLFYLNLNRC---QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
S+ +L+L+ C +S+ G ++ L L+L I D + L +L SLNL
Sbjct: 648 SVRHLDLSGCTGAAVSEAGLADLARR-PLASLDLSRTRIGDREVQALASSASLTSLNLSG 706
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
IGD G L T L S+N+S I D ++ LAG SL SL L +I + G+AAL
Sbjct: 707 NRIGDAGAQALGRNTVLTSLNVSANPIGDTGVQALAGSRSLTSLELRGIRIGEAGIAALA 766
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
S T L LD+ +++ AA L + L SL+ GLT+ + + + SL L +
Sbjct: 767 SNTVLRSLDISSNDLSEQSAAELARNQTLTSLKANDCGLTNGMAQQLARIRSLRTLEVGS 826
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
N ++ D + I+ L +LN+S++ IT GLR PL+ R+LT
Sbjct: 827 N-SIGDTGVLAIARNASLRTLNLSHNPITLQGLR---PLELSRTLT 868
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 156/364 (42%), Gaps = 38/364 (10%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM--- 155
L L+ L SLSF + ++ + ++A + LDL CT G V+ GL
Sbjct: 619 LGRLQNYPALESLSF--HGHLSIEDLRALPPSVR--HLDLSGCT---GAAVSEAGLADLA 671
Query: 156 --KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L SL++ I D +++ L+ +L SL +S +++ D+G L LT LN+
Sbjct: 672 RRPLASLDLSRTR-IGDREVQALASSASLTSLNLSGNRIGDAGAQALGRNTVLTSLNVSA 730
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
P+ + +L+ SL L L ++ + G + L+ L++ N+++++ L
Sbjct: 731 NPIGDTGVQALAGSRSLTSLELRGIRIGEAGIAALASNTVLRSLDISSNDLSEQSAAELA 790
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L SL + CG+ + L + +L ++ + I D + +A +SL++LNL
Sbjct: 791 RNQTLTSLKANDCGLTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSH 850
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
IT GL L LT LD+ D GA L + L SL++ G+ AG + +
Sbjct: 851 NPITLQGLRPLELSRTLTSLDVSRIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGL- 909
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
N T L+SL++ + I A L L SL +
Sbjct: 910 ------------TANRT------------LISLDLRGNTIDVAAATALAHTGRLGSLNVS 945
Query: 454 SCKV 457
CK+
Sbjct: 946 DCKL 949
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 113/240 (47%), Gaps = 29/240 (12%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
++ L LT L L+G +T A L +L A +L +L+L+ C S E + + L +
Sbjct: 99 LSELHHYPNLTSLQLKGN-LTLADLKALPA--TLRHLDLSACTGSAKSSEAIAYLAGLPL 155
Query: 257 --LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
LN+ +I D L +L +LN + GIG G L L S++LS GI D
Sbjct: 156 ESLNVAGADIGDGGARLLAANPSLRALNAANGGIGAAGARALAESPVLTSLDLSQNGIGD 215
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-----AAYLR 369
R LAG SL +L + +TD G AL LT LDL G IT++G AAY R
Sbjct: 216 EGARALAGSRSLTNLAVLNCLVTDVGARALAGNRTLTALDL-GNLITETGNELEQAAYDR 274
Query: 370 NF--------------KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
++L SL I G DAGV+ + S+LT LN++ TD TLE
Sbjct: 275 TANEITAQGAWALAQNRSLTSLSIQGNLCGDAGVQALAGSSTLTSLNVA----YTDMTLE 330
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 306 NLSFTG-ISDGSLRKLAGLSSLKSLNLDA---RQITDTGLAALTSLTGLTHLDLFGARIT 361
+LSF G +S LR L S++ L+L +++ GLA L L LDL RI
Sbjct: 630 SLSFHGHLSIEDLRALP--PSVRHLDLSGCTGAAVSEAGLADLARRP-LASLDLSRTRIG 686
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
D L + +L SL + G + DAG + + + LT LN+S N + D ++ ++G
Sbjct: 687 DREVQALASSASLTSLNLSGNRIGDAGAQALGRNTVLTSLNVSANP-IGDTGVQALAGSR 745
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES---CKVTANDIKRLQS 467
L SL + RI AG+ L LRSL + S + +A ++ R Q+
Sbjct: 746 SLTSLELRGIRIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQT 794
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 86/190 (45%), Gaps = 12/190 (6%)
Query: 268 CLVHLKGL-TNLESLNLDSC---GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
L LK L L L+L +C E + L GL LES+N++ I DG R LA
Sbjct: 118 TLADLKALPATLRHLDLSACTGSAKSSEAIAYLAGLP-LESLNVAGADIGDGGARLLAAN 176
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
SL++LN I G AL LT LDL I D GA L ++L +L +
Sbjct: 177 PSLRALNAANGGIGAAGARALAESPVLTSLDLSQNGIGDEGARALAGSRSLTNLAVLNCL 236
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
+TD G + + +LT L+L T LE + + + + IT+ G L
Sbjct: 237 VTDVGARALAGNRTLTALDLGNLITETGNELE-------QAAYDRTANEITAQGAWALAQ 289
Query: 444 LKNLRSLTLE 453
++L SL+++
Sbjct: 290 NRSLTSLSIQ 299
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 128/320 (40%), Gaps = 54/320 (16%)
Query: 14 LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
L SR LT + L R + + + +AS + L S+D+S +D+++
Sbjct: 741 LAGSRSLTSLELRGIR--------------IGEAGIAALASN-TVLRSLDISSNDLSEQS 785
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
L L SL N C +++G + L + +L +L +N+I G+ A A +L
Sbjct: 786 AAELARNQTLTSLKANDC-GLTNGMAQQLARIRSLRTLEVG-SNSIGDTGVLAIARNASL 843
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLE------SLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+L + L+GL LE SL++ C D LS L SL++
Sbjct: 844 RTLNLSHNP------ITLQGLRPLELSRTLTSLDVSRIGC-GDRGALLLSKNRALTSLKL 896
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ + +G L + L L+L G + A +L+ G L LN++ C+L D+
Sbjct: 897 GFNGIGSAGAQGLTANRTLISLDLRGNTIDVAAATALAHTGRLGSLNVSDCKLDDEAASA 956
Query: 248 FSKI------------------------GSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ +L LN+ N I + L T+L L+
Sbjct: 957 LAESLTLTALDVSMNRLSSQAARALAGNATLTSLNISHNHIGPDGAQALAESTSLTFLDA 1016
Query: 284 DSCGIGDEGLVNLTGLTNLE 303
+ IG+ G L T ++
Sbjct: 1017 RANDIGEAGARALENNTRMQ 1036
>gi|290992226|ref|XP_002678735.1| predicted protein [Naegleria gruberi]
gi|284092349|gb|EFC45991.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 102/364 (28%), Positives = 170/364 (46%), Gaps = 22/364 (6%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL ++ + G K L L KLD+ T G + + +L LNI +
Sbjct: 88 LEQLKSLEISSDHKVGYDGAKVIGQLKQLTKLDISFNTIGAEGAKFIGEMQQLTYLNI-Y 146
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTD--------SGIAYLKGLQKLTLLNLEGCPV 216
N +T ++ +S LTNL L + ++ G YL+ LQKLT L++ +
Sbjct: 147 GNSLTSEGIRFISQLTNLTYLNVRFNEDFRFGGHDKGLEGAQYLRNLQKLTSLDIGYNQI 206
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+ + SL L + L +G SK+ +L++L++ N I DE +VH+ L
Sbjct: 207 GNDGAKFIGEIQSLTELTIRNNNLKAEGVRWLSKLKNLRLLSINNNHIKDEGVVHICKLK 266
Query: 277 NLESLNLDSCGIGDEGLVNLTG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L L+L + I EG+ ++ L + +++S I DG+ + L + L +L D +
Sbjct: 267 QLTHLDLWNTEITAEGIELVSKQLPKVTHLHISINVIRDGT-KFLGEMKQLTTLEADEIE 325
Query: 336 ITDTGLAALTSLTGLTHL----DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+ GL L L L L +LFGA G + K L L + + D GV++
Sbjct: 326 LDAEGLKYLVGLKKLNFLSVNNNLFGAE----GCKVVSEMKQLEELCMNDNNIGDNGVQY 381
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELI-SG-LTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
+ +L SLT L L N N+ + ++L+ SG L L +L++ ++IT + + +K L
Sbjct: 382 LCELKSLTSLCLWNN-NIGIEGVKLLCSGNLNNLTTLDIRGNQITKSDSHLFENMKQLTE 440
Query: 450 LTLE 453
L +E
Sbjct: 441 LLIE 444
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 11/348 (3%)
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
D + T N+ L +L+SL I + + K + L L L IS + + G
Sbjct: 71 DNTKITEFTKWAANIAQLEQLKSLEISSDHKVGYDGAKVIGQLKQLTKLDISFNTIGAEG 130
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-----RCQLSD---DGCEKF 248
++ +Q+LT LN+ G +T+ + +S L +L YLN+ R D +G +
Sbjct: 131 AKFIGEMQQLTYLNIYGNSLTSEGIRFISQLTNLTYLNVRFNEDFRFGGHDKGLEGAQYL 190
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
+ L L++G+N+I ++ + + +L L + + + EG+ L+ L NL ++++
Sbjct: 191 RNLQKLTSLDIGYNQIGNDGAKFIGEIQSLTELTIRNNNLKAEGVRWLSKLKNLRLLSIN 250
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAY 367
I D + + L L L+L +IT G+ ++ L +THL + I D G +
Sbjct: 251 NNHIKDEGVVHICKLKQLTHLDLWNTEITAEGIELVSKQLPKVTHLHISINVIRD-GTKF 309
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L K L +LE L G+K++ L L L+++ N + +++S + L L
Sbjct: 310 LGEMKQLTTLEADEIELDAEGLKYLVGLKKLNFLSVNNNL-FGAEGCKVVSEMKQLEELC 368
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
++++ I G+++L LK+L SL L + + +K L S +L NL +
Sbjct: 369 MNDNNIGDNGVQYLCELKSLTSLCLWNNNIGIEGVKLLCSGNLNNLTT 416
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 149/333 (44%), Gaps = 37/333 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI----SDGGLE---HLRGLSNLT 109
L +++ G+ +T G+ + +NL L+ F D GLE +LR L LT
Sbjct: 138 QQLTYLNIYGNSLTSEGIRFISQLTNLTYLNVRFNEDFRFGGHDKGLEGAQYLRNLQKLT 197
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
SL N I G K + +L +L + L++ ++W
Sbjct: 198 SLDIGYN-QIGNDGAKFIGEIQSLTELTIRNNN--------------LKAEGVRW----- 237
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-LG 228
LS L NL+ L I+ + + D G+ ++ L++LT L+L +TA ++ +S L
Sbjct: 238 ------LSKLKNLRLLSINNNHIKDEGVVHICKLKQLTHLDLWNTEITAEGIELVSKQLP 291
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+ +L+++ + DG + ++ L L E+ E L +L GL L L++++
Sbjct: 292 KVTHLHIS-INVIRDGTKFLGEMKQLTTLEADEIELDAEGLKYLVGLKKLNFLSVNNNLF 350
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-- 346
G EG ++ + LE + ++ I D ++ L L SL SL L I G+ L S
Sbjct: 351 GAEGCKVVSEMKQLEELCMNDNNIGDNGVQYLCELKSLTSLCLWNNNIGIEGVKLLCSGN 410
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L LT LD+ G +IT S + N K L L I
Sbjct: 411 LNNLTTLDIRGNQITKSDSHLFENMKQLTELLI 443
>gi|300694035|ref|YP_003750008.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299076072|emb|CBJ35382.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum PSI07]
Length = 590
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 147/335 (43%), Gaps = 54/335 (16%)
Query: 168 ITDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD D+K L +LK+L +S C +++T GIA+L L L LN+ + A L+
Sbjct: 132 VTDDDLKGLPA--SLKALDLSDCRAQITSEGIAHLSKL-PLVRLNVSHNRIDAEGARLLA 188
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
A+ +L L+++ + DG + + +L +LN+G N I D L T L SLN +
Sbjct: 189 AMPTLTELDISHNDIRADGAQALADSATLTLLNVGNNRIGDRGAQALAANTKLTSLNASA 248
Query: 286 CGIGDEGLVN------------------------LTGLTNLESINLSFTGISDGSLRKLA 321
GIG G+ L T L S+N+ + + D R LA
Sbjct: 249 NGIGSAGVQALAANATLAALDLSCTSIDEESAQALARNTTLTSLNVRLSRLGDAGARALA 308
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG------------------------ 357
++L SLN+ +I G AL + T LT LD+ G
Sbjct: 309 ATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVIHR 368
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
RI +GA L N L SL+I GL G + D +LT L ++ N + D+ + +
Sbjct: 369 NRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRIATNM-IGDEGAKWL 427
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ T L SL++ +RI G + L L SL +
Sbjct: 428 ARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNI 462
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 119/426 (27%), Positives = 182/426 (42%), Gaps = 32/426 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
++L + LSG DVTD L L ++L++LD + C QI+ G+ HL L L L+
Sbjct: 121 AALEKLTLSG-DVTDDDLKGLP--ASLKALDLSDCRAQITSEGIAHLSKLP-LVRLNVSH 176
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I A+G + A + L +LD+ G L L LN+ N I D +
Sbjct: 177 NR-IDAEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTLLNVG-NNRIGDRGAQA 234
Query: 176 LSGLTNLKSLQI------------------------SCSKVTDSGIAYLKGLQKLTLLNL 211
L+ T L SL SC+ + + L LT LN+
Sbjct: 235 LAANTKLTSLNASANGIGSAGVQALAANATLAALDLSCTSIDEESAQALARNTTLTSLNV 294
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+ A +L+A +L LN++ ++ +G + + SL L++G N++ +
Sbjct: 295 RLSRLGDAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQA 354
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L L SL + I G L T L S+++S G+ R +L SL +
Sbjct: 355 LATSMTLTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRI 414
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
I D G L T LT LD+ RI ++GA L L SL I G + GV
Sbjct: 415 ATNMIGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLR 474
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+ ++L LN+S+N +L T L SL V+ + I + G R L K L SL+
Sbjct: 475 LARNTTLAALNVSRNQIGVAGAQDLARNTT-LRSLVVNYNEIGNEGARALAGNKTLASLS 533
Query: 452 LESCKV 457
+ C++
Sbjct: 534 VVDCRI 539
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 156/376 (41%), Gaps = 27/376 (7%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN- 116
+L +D+S +D+ G L D + L L+ +I D G + L + LTSL+ N
Sbjct: 192 TLTELDISHNDIRADGAQALADSATLTLLNVGNN-RIGDRGAQALAANTKLTSLNASANG 250
Query: 117 ----------------------NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKG 153
+I + +A A L L++ R +R+ G L
Sbjct: 251 IGSAGVQALAANATLAALDLSCTSIDEESAQALARNTTLTSLNV-RLSRLGDAGARALAA 309
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L SLN+ N I K L+ T+L SL I +KV G L LT L +
Sbjct: 310 TTTLTSLNVS-LNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVIHR 368
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ A +L+ L L+++ L G F +L L + N I DE L
Sbjct: 369 NRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRIATNMIGDEGAKWLA 428
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
T L SL++ IG+ G L G T L S+N+S I + +LA ++L +LN+
Sbjct: 429 RNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARNTTLAALNVSR 488
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QI G L T L L + I + GA L K L SL + + D G +
Sbjct: 489 NQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLASLSVVDCRIGDEGAHALA 548
Query: 394 DLSSLTLLNLSQNCNL 409
++L LL++S N ++
Sbjct: 549 ANTTLALLDVSLNRHI 564
>gi|242083750|ref|XP_002442300.1| hypothetical protein SORBIDRAFT_08g017670 [Sorghum bicolor]
gi|241942993|gb|EES16138.1| hypothetical protein SORBIDRAFT_08g017670 [Sorghum bicolor]
Length = 489
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 123/432 (28%), Positives = 198/432 (45%), Gaps = 85/432 (19%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
C L+ L +C +ISD G++ L + L SL+ I+ +K+
Sbjct: 10 CPRLEKLSLKWCREISDIGIDLLAKKCPELRSLN------------------ISYLKVG- 50
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSG 196
+G L ++ L +LE L + C+CI D ++ LS G +L+S+ +S C VT G
Sbjct: 51 ------NGSLRSISSLERLEELAMVCCSCIDDEGLELLSKGSDSLQSVDVSRCDHVTSEG 104
Query: 197 IA------------------------YLKGL----QKLTLLNLEGCPVTAACLDSL-SAL 227
+A +L L + LT+L L+G V+ + L ++ +
Sbjct: 105 LASLIDGRNFVQKLYAADCLHEIGQRFLSKLATLKETLTMLKLDGLEVSDSLLQAIGESC 164
Query: 228 GSLFYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNL---------GFNEITDECLVHLKGLT 276
L + L++C ++DDG ++ L+ ++L + I D C +
Sbjct: 165 NKLVEIGLSKCSGVTDDGISSLVAQCSDLRTIDLTCCNLITNNALDSIADNCKM------ 218
Query: 277 NLESLNLDSCG-IGDEGLVNL-TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-A 333
LE L L+SC I ++GL + T NL+ I+L+ G+ D +L LA S L+ L L
Sbjct: 219 -LECLRLESCSLINEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRILKLGLC 277
Query: 334 RQITDTGLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGV 389
I+D G+A ++S G L LDL+ ITD G A L N K ++ L +C +TD G+
Sbjct: 278 SSISDKGIAFISSNCGKLVELDLYRCNSITDDGLAALVNGCKRIKLLNLCYCNKITDTGL 337
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-N 446
H+ L LT L L +T + ++ G L+ L++ + AGL L N
Sbjct: 338 GHLGSLEELTNLELRCLVRITGIGISSVAIGCKSLIELDLKRCYSVDDAGLWALARYALN 397
Query: 447 LRSLTLESCKVT 458
LR LT+ C+VT
Sbjct: 398 LRQLTISYCQVT 409
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 127/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K + IA+ +L +DL+ V D+ L HL CS L+ L C ISD G+ +
Sbjct: 230 INEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRILKLGLCSSISDKGIAFIS 289
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A LVN G +++ LN+
Sbjct: 290 SNCGKLVELDLYRCNSITDDGLAA---------------------LVN--GCKRIKLLNL 326
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITD+ + L L L +L++ C ++T GI+ V C
Sbjct: 327 CYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGIS----------------SVAIGC- 369
Query: 222 DSLSALGSLFYLNLNRCQLSDD-GCEKFSKIG-SLKVLNLGFNEITDECLVHLKGLTNLE 279
SL L+L RC DD G ++ +L+ L + + ++T L HL L++L
Sbjct: 370 ------KSLIELDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 421
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L D +V+L+ ++ +E ++ G L+KL L LK++
Sbjct: 422 CLQ-------DIKMVHLSWVS-IEGFEMALRAAC-GRLKKLKMLCGLKTV 462
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 165/356 (46%), Gaps = 31/356 (8%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L ++D +D++A + L S+++S V + L + L+ L C
Sbjct: 13 LEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLRSISSLERLEELAMVCCS 72
Query: 93 QISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLV-KLDLERC-----TRIH 145
I D GLE L +G +L S+ R + +T++G+ + N V KL C R
Sbjct: 73 CIDDEGLELLSKGSDSLQSVDVSRCDHVTSEGLASLIDGRNFVQKLYAADCLHEIGQRFL 132
Query: 146 GGLVNLK---GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI---SCSKVTDSGIAY 199
L LK ++KL+ L + +DS ++ + N K ++I CS VTD GI+
Sbjct: 133 SKLATLKETLTMLKLDGLEV------SDSLLQAIGESCN-KLVEIGLSKCSGVTDDGISS 185
Query: 200 LKG-LQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRCQL-SDDGCEKFSKI-GSL 254
L L ++L C +T LDS++ L L L C L ++ G ++ + +L
Sbjct: 186 LVAQCSDLRTIDLTCCNLITNNALDSIADNCKMLECLRLESCSLINEKGLKRIATCCPNL 245
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTG-LTNLESINL-SFTG 311
K ++L + D L HL + L L L C I D+G+ ++ L ++L
Sbjct: 246 KEIDLTDCGVDDAALEHLAKCSELRILKLGLCSSISDKGIAFISSNCGKLVELDLYRCNS 305
Query: 312 ISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSG 364
I+D L L G +K LNL +ITDTGL L SL LT+L+L RIT G
Sbjct: 306 ITDDGLAALVNGCKRIKLLNLCYCNKITDTGLGHLGSLEELTNLELRCLVRITGIG 361
>gi|406831652|ref|ZP_11091246.1| hypothetical protein SpalD1_08439 [Schlesneria paludicola DSM
18645]
Length = 267
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%)
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
P+ A L + L L L L Q++D EK + +L L LG+++++D + HLKG
Sbjct: 92 PLPAELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKG 151
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L+ LE + L +GD+ L GL NL+SI L+ T ++D ++KL L L+ L L
Sbjct: 152 LSGLEWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGT 211
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
++D GL L + L LD+ I+D G A +R
Sbjct: 212 DVSDDGLKYLIEMKALKRLDIGNTLISDEGQAAIRK 247
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 245 CEKFSKIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
E S+IG+LK L + ++TD + L G+ NL L L + D G+ +L GL+
Sbjct: 95 AELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSG 154
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
LE I L T + D + L GL +LKS+ L+ +TD G+ L +L L +L L G ++
Sbjct: 155 LEWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVS 214
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
D G YL K L+ L+I ++D G I+
Sbjct: 215 DDGLKYLIEMKALKRLDIGNTLISDEGQAAIR 246
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query: 305 INLSFTG--ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
+ FTG S+R G++S+ SL R + L+ + +L L L L G ++TD
Sbjct: 61 VEFRFTGPMWVPKSIRSHGGVTSI-SLTTTDRPLPAELLSEIGTLKELKTLWLLGPQVTD 119
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
L KNL L + L+D G++H+K LS L + L Q + DKT +++ GL
Sbjct: 120 VAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLIQT-QVGDKTCDILQGLPN 178
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
L S+ ++++ +T AG++ LK L +L+ L L V+ + +K L
Sbjct: 179 LKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYL 221
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
S I LK L+ L LL G VT ++ L + +L L L QLSD G E + L
Sbjct: 99 SEIGTLKELKTLWLL---GPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGL 155
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
+ + L ++ D+ L+GL NL+S+ L+ + D G+ L L +L+ + L+ T +SD
Sbjct: 156 EWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSD 215
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
L+ L + +LK L++ I+D G AA+
Sbjct: 216 DGLKYLIEMKALKRLDIGNTLISDEGQAAI 245
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 20/200 (10%)
Query: 112 SFRRNNAITAQGMKAFAGLINLV---KLDLERCTRIHGGLVN--------------LKGL 154
SF+ I A+ +++ G + + + + R HGG+ + L +
Sbjct: 43 SFQDERRIAAK-IESLGGRVEFRFTGPMWVPKSIRSHGGVTSISLTTTDRPLPAELLSEI 101
Query: 155 MKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L+ L W +TD ++ L G+ NL L + S+++D GI +LKGL L + L
Sbjct: 102 GTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLI 161
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
V D L L +L + LN ++D G +K +G L+ L L +++D+ L +L
Sbjct: 162 QTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYL 221
Query: 273 KGLTNLESLNLDSCGIGDEG 292
+ L+ L++ + I DEG
Sbjct: 222 IEMKALKRLDIGNTLISDEG 241
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G VTD + L NL L + Q+SD G+EHL+GLS L + F + +
Sbjct: 112 LLGPQVTDVAVEKLVGMKNLTGLYLGYS-QLSDRGIEHLKGLSGLEWI-FLIQTQVGDKT 169
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
GL NL + L G+ LK L L+ L + + ++D +K L + LK
Sbjct: 170 CDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTD-VSDDGLKYLIEMKALK 228
Query: 184 SLQISCSKVTDSGIAYLK 201
L I + ++D G A ++
Sbjct: 229 RLDIGNTLISDEGQAAIR 246
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
K L++L + G +TD V+ + + +LT L L + L+D+ +E + GL+GL + +
Sbjct: 103 TLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYS-QLSDRGIEHLKGLSGLEWIFLI 161
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+++ L+ L NL+S+ L VT +K+L++
Sbjct: 162 QTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKA 199
>gi|290980460|ref|XP_002672950.1| predicted protein [Naegleria gruberi]
gi|284086530|gb|EFC40206.1| predicted protein [Naegleria gruberi]
Length = 331
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 104/205 (50%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K +S + L SL IS +++ G + +++LT LN+ G + +S + L
Sbjct: 125 LKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMKQLTS 184
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L + ++ +G + S++ L L++G N+I DE + + + L SLN+ + IGD G
Sbjct: 185 LYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVIGDAG 244
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ + L S+N+S+ I D + + + L SLN+ +I + G ++ + LT
Sbjct: 245 AKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEMKQLTS 304
Query: 353 LDLFGARITDSGAAYLRNFKNLRSL 377
LD+ G RI GA ++ K L SL
Sbjct: 305 LDIAGNRIGGEGAKFISEMKQLISL 329
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 3/212 (1%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
E L + + L SL++ I EG ++ + L S+N++ I + ++G+ L
Sbjct: 123 EKLKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMKQL 182
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
SL + +I G ++ + L LD+ G +I D + K L SL I + D
Sbjct: 183 TSLYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVIGD 242
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
AG K I D+ LT LN+S N + D+ + I+ + L SLN++ + I +AG + + +K
Sbjct: 243 AGAKFIGDMKQLTSLNISYNV-IGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEMKQ 301
Query: 447 LRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478
L SL + ++ K + ++ L+S R
Sbjct: 302 LTSLDIAGNRIGGEGAKFIS--EMKQLISLRK 331
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 1/206 (0%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L +S + L L+++ ++ +G + S++ L LN+ N I E + G+ L S
Sbjct: 125 LKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMKQLTS 184
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L + + IG EG ++ + L S+++ I D ++ ++ + L SLN+ I D G
Sbjct: 185 LYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVIGDAG 244
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+ + LT L++ I D GA Y+ K L SL I + +AG K I ++ LT
Sbjct: 245 AKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEMKQLTS 304
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSL 426
L+++ N + + + IS + L+SL
Sbjct: 305 LDIAGN-RIGGEGAKFISEMKQLISL 329
>gi|290974952|ref|XP_002670208.1| leucine-rich repeat protein [Naegleria gruberi]
gi|284083764|gb|EFC37464.1| leucine-rich repeat protein [Naegleria gruberi]
Length = 252
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 128/288 (44%), Gaps = 49/288 (17%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+CN + K +S + L SL IS +++ D G ++ G+++LT
Sbjct: 10 YCNQVGVEGAKSISEMKQLTSLNISNNEIGDKGANFISGMKQLT---------------- 53
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
LN+ + ++G + S++ L VL +G N+
Sbjct: 54 --------SLNIGSNKFGNEGAKSISEMKQLTVLYIGLNQ-------------------- 85
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
IGDEG+ ++ + L S+++ + GI ++ + L SL++ QI D G +
Sbjct: 86 ----IGDEGVKFISEMKRLTSVDICYNGIGVKGANSISEMKQLTSLDICLNQIGDEGAKS 141
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ L LT L + +I D GA + K L SL I + G + I +L LT L
Sbjct: 142 ISELEQLTLLYISANQIGDEGAKSISELKQLTSLAISANQIGVKGAESISELKQLTSLAA 201
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
S N + + ++ IS + L SL++ N+RI + G+ L L +L+ L
Sbjct: 202 SAN-QIGAEGVKFISEMKQLTSLDIGNNRIGAEGVTLLTSLTSLKFLV 248
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 118/239 (49%), Gaps = 5/239 (2%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N + +G K+ + + L L++ G + G+ +L SLNI N + K +
Sbjct: 12 NQVGVEGAKSISEMKQLTSLNISNNEIGDKGANFISGMKQLTSLNI-GSNKFGNEGAKSI 70
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL--EGCPVTAACLDSLSALGSLFYLN 234
S + L L I +++ D G+ ++ +++LT +++ G V A +S+S + L L+
Sbjct: 71 SEMKQLTVLYIGLNQIGDEGVKFISEMKRLTSVDICYNGIGVKGA--NSISEMKQLTSLD 128
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ Q+ D+G + S++ L +L + N+I DE + L L SL + + IG +G
Sbjct: 129 ICLNQIGDEGAKSISELEQLTLLYISANQIGDEGAKSISELKQLTSLAISANQIGVKGAE 188
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+++ L L S+ S I ++ ++ + L SL++ +I G+ LTSLT L L
Sbjct: 189 SISELKQLTSLAASANQIGAEGVKFISEMKQLTSLDIGNNRIGAEGVTLLTSLTSLKFL 247
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
G K I ++ LT LN+S N + DK ISG+ L SLN+ +++ + G + + +K L
Sbjct: 18 GAKSISEMKQLTSLNISNN-EIGDKGANFISGMKQLTSLNIGSNKFGNEGAKSISEMKQL 76
Query: 448 RSLTL-------ESCKVTANDIKRLQSRDL 470
L + E K + ++KRL S D+
Sbjct: 77 TVLYIGLNQIGDEGVKFIS-EMKRLTSVDI 105
>gi|290989399|ref|XP_002677325.1| predicted protein [Naegleria gruberi]
gi|284090932|gb|EFC44581.1| predicted protein [Naegleria gruberi]
Length = 412
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 146/311 (46%), Gaps = 28/311 (9%)
Query: 94 ISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+SD ++H G S++ L F + MK ++ + NL L +++C V L
Sbjct: 64 VSDK-IDHKWGFTGSSIKKLKFSHLTIKSTDFMKIYSNMKNLKSLSMKKCRIEKKDFVYL 122
Query: 152 KGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+ +LESLNI + N + K + LTNLK IS + + Y+ ++ LT L
Sbjct: 123 MKIKQLESLNIIPHFSNITNEEICKICTNLTNLKDFGISGMSLQYKTLQYITNMKSLTSL 182
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL----------KVLNL 259
++ + L + + L LN+ D+G I SL + +N
Sbjct: 183 DISNTELYEEYLQEIGKMTHLTSLNI-----GDNGTIPLQYIKSLAGLKSLNINGRFINN 237
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LTNLESINLSFTGISDGSLR 318
GF E+ + LK L +L L++ I +GL L +L S+++S+ G+ GS++
Sbjct: 238 GFYELRE-----LKDLHSLTELSVSHNTIKTKGLKYLIDTFPDLTSLDISYNGL--GSIK 290
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
K+ L L L++ I+D L +T L LT L++ +ITD+GA + ++LR+++
Sbjct: 291 KIRKLKHLTKLDISNNSISDQDLIYITCLPQLTKLNISSNQITDNGALLFASMESLRNID 350
Query: 379 ICGGGLTDAGV 389
+ +T+ V
Sbjct: 351 VRFNDITNDKV 361
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 38/245 (15%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK---GLTNLESLNLDSCGIGDEGLVNL 296
+SD K+ GS + L F+ +T + +K + NL+SL++ C I + V L
Sbjct: 64 VSDKIDHKWGFTGS-SIKKLKFSHLTIKSTDFMKIYSNMKNLKSLSMKKCRIEKKDFVYL 122
Query: 297 TGLTNLESINL--SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
+ LES+N+ F+ I++ + K+ T+LT L
Sbjct: 123 MKIKQLESLNIIPHFSNITNEEICKIC-----------------------TNLTNLKDFG 159
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ G + Y+ N K+L SL+I L + ++ I ++ LT LN+ N + L
Sbjct: 160 ISGMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIGKMTHLTSLNIGDNGTI---PL 216
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
+ I L GL SLN+ N R + G L+ LK+L SLT V+ N IK ++ L L+
Sbjct: 217 QYIKSLAGLKSLNI-NGRFINNGFYELRELKDLHSLT--ELSVSHNTIK---TKGLKYLI 270
Query: 475 SFRPE 479
P+
Sbjct: 271 DTFPD 275
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 117/230 (50%), Gaps = 15/230 (6%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL--DSCGIGDEGLVNL-T 297
S D + +S + +LK L++ I + V+L + LESLN+ I +E + + T
Sbjct: 91 STDFMKIYSNMKNLKSLSMKKCRIEKKDFVYLMKIKQLESLNIIPHFSNITNEEICKICT 150
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
LTNL+ +S + +L+ + + SL SL++ ++ + L + +T LT L+
Sbjct: 151 NLTNLKDFGISGMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIGKMTHLTSLN--- 207
Query: 358 ARITDSGA---AYLRNFKNLRSLEICGGGLTDA--GVKHIKDLSSLTLLNLSQNCNLTDK 412
I D+G Y+++ L+SL I G + + ++ +KDL SLT L++S N T
Sbjct: 208 --IGDNGTIPLQYIKSLAGLKSLNINGRFINNGFYELRELKDLHSLTELSVSHNTIKTKG 265
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
LI L SL++S + + S ++ ++ LK+L L + + ++ D+
Sbjct: 266 LKYLIDTFPDLTSLDISYNGLGS--IKKIRKLKHLTKLDISNNSISDQDL 313
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 24/244 (9%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+SG + L ++ + +L SLD + ++ + L+ + +++LTSL+ N I Q
Sbjct: 160 ISGMSLQYKTLQYITNMKSLTSLDIS-NTELYEEYLQEIGKMTHLTSLNIGDNGTIPLQY 218
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVN--------LKGLMKLESLNIKWCNCITDSDMKP 175
+K+ AGL +L I+G +N LK L L L++ N I +K
Sbjct: 219 IKSLAGLKSL---------NINGRFINNGFYELRELKDLHSLTELSVS-HNTIKTKGLKY 268
Query: 176 L-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L +L SL IS + + I ++ L+ LT L++ ++ L ++ L L LN
Sbjct: 269 LIDTFPDLTSLDISYNGL--GSIKKIRKLKHLTKLDISNNSISDQDLIYITCLPQLTKLN 326
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ Q++D+G F+ + SL+ +++ FN+IT++ + +G+ NLE L S +
Sbjct: 327 ISSNQITDNGALLFASMESLRNIDVRFNDITNDKV--FQGMINLEKLKFKSFSLEPSSRK 384
Query: 295 NLTG 298
N G
Sbjct: 385 NKDG 388
>gi|149175637|ref|ZP_01854257.1| putative serine/threonine-protein kinase [Planctomyces maris DSM
8797]
gi|148845622|gb|EDL59965.1| putative serine/threonine-protein kinase [Planctomyces maris DSM
8797]
Length = 718
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 95/188 (50%), Gaps = 8/188 (4%)
Query: 165 CNCITDSDMKPLSGLTNL-------KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
C I D +P++ + L + ++ +T +A LKGL KL L+LE C V
Sbjct: 519 CEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVM 578
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLT 276
L L +L L+L+ L++ G S + +L L+L N EITDE L L L
Sbjct: 579 DDALAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANLK 638
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L S+NLD I DEG+ + L+ +N+ T ISD S+ L L+ +K+L L+ +I
Sbjct: 639 KLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRMKNLYLEGSKI 698
Query: 337 TDTGLAAL 344
TD G+ +
Sbjct: 699 TDQGIQKI 706
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 108/199 (54%), Gaps = 11/199 (5%)
Query: 228 GSLFYLNLNRCQLSDDG-CEKFSKIGSLKVLNLGFNEI-------TDECLVHLKGLTNLE 279
+++ LN ++C++ DG E +++ L V++ EI T E + LKGL LE
Sbjct: 510 AAVWLLN-HQCEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLE 568
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITD 338
+L+L+ C + D+ L L G L++++L TG+++ L ++ L +L L+L R+ITD
Sbjct: 569 TLHLEDCHVMDDALAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITD 628
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
GL AL +L L+ ++L ITD G ++++ L L I ++D + + L+ +
Sbjct: 629 EGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRM 688
Query: 399 TLLNLSQNCNLTDKTLELI 417
L L + +TD+ ++ I
Sbjct: 689 KNLYL-EGSKITDQGIQKI 706
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++ L V D L L+ L++LD + +++ GL H+ L NLT LS ++N
Sbjct: 565 AKLETLHLEDCHVMDDALAPLEGKLTLKTLDLHET-GLTNAGLSHISSLLNLTHLSLQKN 623
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +G++A A L L ++L+R G+ +K +L+ LNIK I+D+ + L
Sbjct: 624 REITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIK-DTQISDTSIPLL 682
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
L +K+L + SK+TD GI +K
Sbjct: 683 IKLNRMKNLYLEGSKITDQGIQKIK 707
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 8/190 (4%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFR------RNNAITAQGMKAFAGLINLVKLDLERCTRI 144
C I DG E + + L + F IT + M GL L L LE C +
Sbjct: 519 CEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVM 578
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGL 203
L L+G + L++L++ +T++ + +S L NL L + ++ +TD G+ L L
Sbjct: 579 DDALAPLEGKLTLKTLDLHETG-LTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANL 637
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
+KL+ +NL+ +T + + L +LN+ Q+SD K+ +K L L ++
Sbjct: 638 KKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRMKNLYLEGSK 697
Query: 264 ITDECLVHLK 273
ITD+ + +K
Sbjct: 698 ITDQGIQKIK 707
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 7/161 (4%)
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQI-------TDTGLAALTSLTGLTHLDLFGARITDSG 364
I DG + + L ++ R+I T +A L L L L L + D
Sbjct: 522 IIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVMDDA 581
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
A L L++L++ GLT+AG+ HI L +LT L+L +N +TD+ L+ ++ L L
Sbjct: 582 LAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANLKKLS 641
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
S+N+ IT G+ +K L L ++ +++ I L
Sbjct: 642 SINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLL 682
>gi|343423900|emb|CCD18013.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
Length = 648
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 202/388 (52%), Gaps = 37/388 (9%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT-AQGMKAFAGLINLVK 135
L + S+L++LD + C I+D + L S+L +L IT + F+ +L
Sbjct: 131 LSELSSLRTLDLSHCTGITD--VSPLLKFSSLHTLDLSHCTGITDVSPLLMFS---SLRM 185
Query: 136 LDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
LD+ CT G+ N+ L KL SL + + C +++ PLS L++L++L IS C+ +T
Sbjct: 186 LDISHCT----GITNVSPLSKLSSLRTLYFLYCTGITNVSPLSELSSLRTLDISHCTGIT 241
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
D ++ L L L +L+L C + + LS + +L L+L+ C D SK+
Sbjct: 242 D--VSPLSELSSLRMLDLSHC-TDISNVSRLSKIIALQKLDLSHCTGVTD-VSPLSKMIG 297
Query: 254 LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-T 310
L+ L L ITD + L L++L LNL C GI D + L+ ++L +++LS T
Sbjct: 298 LEKLYLSHCTGITD--VPPLSELSSLRMLNLSHCTGITD--VSPLSEFSSLHTLDLSHCT 353
Query: 311 GISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL 368
GI+D S L+ LSSL++L+L ITD ++ L+ L+ L LDL ITD + L
Sbjct: 354 GITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSELSSLCTLDLSHCTGITD--VSPL 407
Query: 369 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
+L +LE+ G+TD V + +LSSL L+LS +TD + +S L+GL L
Sbjct: 408 SKLSSLCTLELSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSGLRMLY 463
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESC 455
+S+ + + L L +LR L L C
Sbjct: 464 LSHCP-SITDVSPLSELSSLRMLNLSHC 490
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 194/380 (51%), Gaps = 42/380 (11%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S+L+ LD + C I++ + L LS+L +L F IT + + L +L LD+
Sbjct: 181 SSLRMLDISHCTGITN--VSPLSKLSSLRTLYFLYCTGIT--NVSPLSELSSLRTLDISH 236
Query: 141 CTRIHGGLVNLKGLMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGI 197
CT G+ ++ L +L SL + +C S++ LS + L+ L +S C+ VTD S +
Sbjct: 237 CT----GITDVSPLSELSSLRMLDLSHCTDISNVSRLSKIIALQKLDLSHCTGVTDVSPL 292
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
+ + GL+KL L + G +T LS L SL LNL+ C D S+ SL L
Sbjct: 293 SKMIGLEKLYLSHCTG--ITDV--PPLSELSSLRMLNLSHCTGITD-VSPLSEFSSLHTL 347
Query: 258 NLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISD 314
+L ITD + L L++L +L+L C GI D + L+ L++L +++LS TGI+D
Sbjct: 348 DLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLCTLDLSHCTGITD 403
Query: 315 GSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK 372
S L+ LSSL +L L ITD ++ L+ L+ L LDL ITD + L
Sbjct: 404 VS--PLSKLSSLCTLELSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELS 457
Query: 373 NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN- 430
LR L + +TD V + +LSSL +LNLS +TD +S L+ SL++
Sbjct: 458 GLRMLYLSHCPSITD--VSPLSELSSLRMLNLSHCTGITD-----VSPLSEFSSLHILGL 510
Query: 431 SRITSAGLRHLKPLKNLRSL 450
S T G+ + PL L SL
Sbjct: 511 SHCT--GITDVSPLSKLSSL 528
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 132/423 (31%), Positives = 199/423 (47%), Gaps = 74/423 (17%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L++LD + C I+D + L LS+L L I + + +I L KL
Sbjct: 223 LSELSSLRTLDISHCTGITD--VSPLSELSSLRMLDLSHCTDI--SNVSRLSKIIALQKL 278
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
DL CT + + L ++ LE L + C ITD + PLS L++L+ L +S C+ +TD
Sbjct: 279 DLSHCTGV-TDVSPLSKMIGLEKLYLSHCTGITD--VPPLSELSSLRMLNLSHCTGITD- 334
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
++ L L L+L C + LS L SL L+L+ C D S++ SL
Sbjct: 335 -VSPLSEFSSLHTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSELSSLC 391
Query: 256 VLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGI 312
L+L ITD + L L++L +L L C GI D + L+ L++L +++LS TGI
Sbjct: 392 TLDLSHCTGITD--VSPLSKLSSLCTLELSHCTGITD--VSPLSELSSLRTLDLSHCTGI 447
Query: 313 SDGS-LRKLAGL--------------------SSLKSLNLD-ARQITD------------ 338
+D S L +L+GL SSL+ LNL ITD
Sbjct: 448 TDVSPLSELSGLRMLYLSHCPSITDVSPLSELSSLRMLNLSHCTGITDVSPLSEFSSLHI 507
Query: 339 ------TGLAALTSLTGLTHLDLFGAR----ITD-SGAAYLRNFKNLRSLEICGGGLTDA 387
TG+ ++ L+ L+ L + G ITD S + F+ L L C G +TD
Sbjct: 508 LGLSHCTGITDVSPLSKLSSLHILGLSHCTGITDVSPLTTIIGFEKLY-LSNCTG-ITD- 564
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
V + +LSSL L+LS +TD + +S L+ L +L S+ G+ + PL L
Sbjct: 565 -VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLYFSH----CTGITDVSPLSEL 617
Query: 448 RSL 450
SL
Sbjct: 618 SSL 620
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 12/184 (6%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L+ L+ + C I+D + L S+L L IT + + L +L L
Sbjct: 476 LSELSSLRMLNLSHCTGITD--VSPLSEFSSLHILGLSHCTGIT--DVSPLSKLSSLHIL 531
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L CT I + L ++ E L + C ITD + PLS L++L++L +S C+ +TD
Sbjct: 532 GLSHCTGI-TDVSPLTTIIGFEKLYLSNCTGITD--VSPLSELSSLRTLDLSHCTGITD- 587
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
++ L L L L C + LS L SL L+L C D S++ SL
Sbjct: 588 -VSPLSKLSSLRTLYFSHC-TGITDVSPLSELSSLRTLDLLHCTGITD-VSPLSELSSLG 644
Query: 256 VLNL 259
L+
Sbjct: 645 TLDF 648
>gi|242067197|ref|XP_002448875.1| hypothetical protein SORBIDRAFT_05g000740 [Sorghum bicolor]
gi|241934718|gb|EES07863.1| hypothetical protein SORBIDRAFT_05g000740 [Sorghum bicolor]
Length = 691
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 113/397 (28%), Positives = 185/397 (46%), Gaps = 43/397 (10%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L GV+D + ++A + L S+DLS + +T + NLQ L CI
Sbjct: 202 LRELSLKWCLGVSDLGIQLLALKCRKLTSLDLSYTMITKDSFPPIMKLPNLQELTLVGCI 261
Query: 93 QISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
I D L L+ +L L IT G+ + L+ NL +LDL C + +V
Sbjct: 262 GIDDDALGSLQKECSKSLQVLDLSHCQNITDVGVSSILKLVPNLFELDLSYCCPVTPSMV 321
Query: 150 -NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY-LKGLQKL 206
+ + + KL +L ++ C + D + +LK L +S CS +TD+ ++ + L+ L
Sbjct: 322 RSFQKIPKLRTLKLEGCKFMVDGLKAIGTSCVSLKELNLSKCSGMTDTEFSFAMSRLKNL 381
Query: 207 TLLNLEGCP-VTAACLDSL-SALGSLFYLNLNRCQ------------------------- 239
L++ C +T L ++ S+ SL L + C
Sbjct: 382 LKLDITCCRNITDVSLAAMTSSCTSLISLRMESCSRVSSGALQLIGKHCSHLEQLDLTDS 441
Query: 240 -LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVN 295
L D+G + S+ G L L +G +I+DE L H+ + NL ++L C G+ D+G++
Sbjct: 442 DLDDEGLKALSRCGKLSSLKIGICLKISDEGLTHIGRSCPNLRDIDLYRCGGLSDDGIIP 501
Query: 296 LT-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT-SLTGLT 351
+ G LESINLS+ T I+D SL L+ + L +L + IT TGL+ + L+
Sbjct: 502 IAQGCPMLESINLSYCTEITDRSLISLSKCTKLNTLEIRGCPMITSTGLSEIAMGCRLLS 561
Query: 352 HLDLFGA-RITDSGAAYLRNFKN-LRSLEICGGGLTD 386
LD+ + D G YL F + LR + + +TD
Sbjct: 562 KLDIKKCFEVNDVGMLYLSQFSHSLREINLSYCSVTD 598
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 114/382 (29%), Positives = 173/382 (45%), Gaps = 47/382 (12%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
C L+ L +C+ +SD G++ L LTSL IT L NL +L L
Sbjct: 199 CMELRELSLKWCLGVSDLGIQLLALKCRKLTSLDLS-YTMITKDSFPPIMKLPNLQELTL 257
Query: 139 ERCTRIHG---GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQIS-CSKVT 193
C I G + + L+ L++ C ITD + + L NL L +S C VT
Sbjct: 258 VGCIGIDDDALGSLQKECSKSLQVLDLSHCQNITDVGVSSILKLVPNLFELDLSYCCPVT 317
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG----SLFYLNLNRCQLSDDGCEKF- 248
S + + + KL L LEGC +D L A+G SL LNL++C D F
Sbjct: 318 PSMVRSFQKIPKLRTLKLEGCKFM---VDGLKAIGTSCVSLKELNLSKCSGMTDTEFSFA 374
Query: 249 -SKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTG--LTNLE 303
S++ +L L++ ITD L + T+L SL ++SC G + L G ++LE
Sbjct: 375 MSRLKNLLKLDITCCRNITDVSLAAMTSSCTSLISLRMESCSRVSSGALQLIGKHCSHLE 434
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
++L+ + + D L+ L+ L SL + G+ S GLTH+
Sbjct: 435 QLDLTDSDLDDEGLKALSRCGKLSSLKI--------GICLKISDEGLTHIG--------- 477
Query: 364 GAAYLRNFKNLRSLEI--CGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGL 420
R+ NLR +++ CGG L+D G+ I + L +NLS +TD++L +S
Sbjct: 478 -----RSCPNLRDIDLYRCGG-LSDDGIIPIAQGCPMLESINLSYCTEITDRSLISLSKC 531
Query: 421 TGLVSLNVSN-SRITSAGLRHL 441
T L +L + ITS GL +
Sbjct: 532 TKLNTLEIRGCPMITSTGLSEI 553
>gi|156377140|ref|XP_001630715.1| predicted protein [Nematostella vectensis]
gi|156217741|gb|EDO38652.1| predicted protein [Nematostella vectensis]
Length = 398
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 161/323 (49%), Gaps = 47/323 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLD 137
S ++SL+ C ++D + H ++ L LT L IT + A + NL LD
Sbjct: 94 SCIESLNLKGCYNVTDTSIGHAFVKYLPTLTVLDLSLCKQITDSSLGKIADFLKNLEFLD 153
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT---------NLKSLQ 186
L C I G L+ GL+KL+ LN++ C I+D+ + LSGL+ NL +L
Sbjct: 154 LAGCCNITNTGLLLCSWGLVKLKHLNLRSCRHISDAGILHLSGLSNNINAHGNKNLTTLC 213
Query: 187 IS-CSKVTDSGIAYL-KGLQKLTLLNLE-GCPVTAACLDSLSALGSLFYLNLNRCQ-LSD 242
+ C K+TD+ + ++ KGL L LNL C ++ A L L+ L SL LNL C+ +++
Sbjct: 214 LQDCQKITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSLRELNLRSCEGVNN 273
Query: 243 DGCEKFSKIG-SLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGL 299
+G + G +L L++ F ++I D L H+ GL +L++L L+S I DEGL ++
Sbjct: 274 EGIAHLAVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLNSSHITDEGLCKIS-- 331
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG 357
L L+ LN+ QITD +A++ S L +T++DL+G
Sbjct: 332 ---------------------RHLRELRVLNIGQCTQITDQSIASIASNLICITNIDLYG 370
Query: 358 -ARITDSGAAYLRNFKNLRSLEI 379
++T G L + LR L +
Sbjct: 371 CTKVTKCGLEKLMHLPKLRVLNL 393
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 104/201 (51%), Gaps = 29/201 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD+ L H+ K NL+ L+ +FC IS GL HL L +L L+ R + +G+
Sbjct: 220 ITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSLRELNLRSCEGVNNEGIAHL 279
Query: 128 A-GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
A G +NLV LD+ C +I G + L ++ SGL +L++L
Sbjct: 280 AVGGLNLVCLDVSFCDKI--------GDVALNHIS---------------SGLNHLQNLG 316
Query: 187 ISCSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSA-LGSLFYLNLNRC-QLSD 242
++ S +TD G+ + + L++L +LN+ C +T + S+++ L + ++L C +++
Sbjct: 317 LNSSHITDEGLCKISRHLRELRVLNIGQCTQITDQSIASIASNLICITNIDLYGCTKVTK 376
Query: 243 DGCEKFSKIGSLKVLNLGFNE 263
G EK + L+VLNLG +
Sbjct: 377 CGLEKLMHLPKLRVLNLGLWQ 397
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 101/201 (50%), Gaps = 27/201 (13%)
Query: 272 LKGLTNLESLNLDSC-GIGDE--GLVNLTGLTNLESINLSFTG-ISDGSLRKLAG-LSSL 326
++ L+ +ESLNL C + D G + L L ++LS I+D SL K+A L +L
Sbjct: 90 VQSLSCIESLNLKGCYNVTDTSIGHAFVKYLPTLTVLDLSLCKQITDSSLGKIADFLKNL 149
Query: 327 KSLNLDAR-QITDTGLAALT-SLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGG 383
+ L+L IT+TGL + L L HL+L R I+D+G +L N
Sbjct: 150 EFLDLAGCCNITNTGLLLCSWGLVKLKHLNLRSCRHISDAGILHLSGLSN---------- 199
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELIS-GLTGLVSLNVSNS-RITSAGLRH 440
+ K+L++L L Q+C +TD L IS GL L LN+S I+ AGL H
Sbjct: 200 --NINAHGNKNLTTLCL----QDCQKITDNALRHISKGLINLECLNLSFCCGISGAGLAH 253
Query: 441 LKPLKNLRSLTLESCKVTAND 461
L L++LR L L SC+ N+
Sbjct: 254 LATLRSLRELNLRSCEGVNNE 274
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 27/181 (14%)
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDS--GA 365
F ++ +RK+ LS KSL+ + SL+ + L+L G +TD+ G
Sbjct: 66 FPSLAKRGIRKIRILSLKKSLSF-----------VVQSLSCIESLNLKGCYNVTDTSIGH 114
Query: 366 AYLRNFKNLRSLEIC-GGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELIS-GLTG 422
A+++ L L++ +TD+ + I D L +L L+L+ CN+T+ L L S GL
Sbjct: 115 AFVKYLPTLTVLDLSLCKQITDSSLGKIADFLKNLEFLDLAGCCNITNTGLLLCSWGLVK 174
Query: 423 LVSLNVSNSR-ITSAGLRHLKPL---------KNLRSLTLESCKVTANDIKRLQSRDLPN 472
L LN+ + R I+ AG+ HL L KNL +L L+ C+ ++ R S+ L N
Sbjct: 175 LKHLNLRSCRHISDAGILHLSGLSNNINAHGNKNLTTLCLQDCQKITDNALRHISKGLIN 234
Query: 473 L 473
L
Sbjct: 235 L 235
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKD-CSNLQSLDFN 89
+L++L L GVN++ + +A G +L+ +D+S D + D L H+ ++LQ+L N
Sbjct: 259 SLRELNLRSCEGVNNEGIAHLAVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLN 318
Query: 90 FCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI-HG 146
I+D GL + R L L L+ + IT Q + + A LI + +DL CT++
Sbjct: 319 SS-HITDEGLCKISRHLRELRVLNIGQCTQITDQSIASIASNLICITNIDLYGCTKVTKC 377
Query: 147 GLVNLKGLMKLESLNI 162
GL L L KL LN+
Sbjct: 378 GLEKLMHLPKLRVLNL 393
>gi|254411888|ref|ZP_05025664.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196181610|gb|EDX76598.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 415
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 102/319 (31%), Positives = 161/319 (50%), Gaps = 61/319 (19%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD--------------------SGIAYLKGLQKLTLLN 210
SD+ PLS LTNL+SL + +++TD + I L L LT L+
Sbjct: 86 SDLSPLSELTNLESLHLDGNQITDICPLTELTNLKYLTLRRNQITDICPLTELTNLTELS 145
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
LEG + A ++SL+ L +L +LNL Q++ +++ +LK L+L N+ITD +
Sbjct: 146 LEGNQI--ADVNSLAELTNLEFLNLENNQIT--TISPLAELQNLKRLHLEDNQITD--IS 199
Query: 271 HLKGLTNLESLNLDSCGIGD----EGLVNLTG----------------LTNLESINLSFT 310
L GL NL L+L+ I D NL G LTNL+++ L F
Sbjct: 200 SLAGLQNLTWLHLEDNQITDISPLSEFTNLKGLFLVLNQIKDISPLSQLTNLKALELKFN 259
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I D + LA L +L L+L+ QITD ++ L+ LT LT L L +I D + L
Sbjct: 260 QIQD--ISPLAELQNLTWLDLEDNQITD--ISPLSGLTNLTFLSLTYNQIQD--VSPLSG 313
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
NL+ L++ + D + + +L++L L+L+ N +TD + +SGL L +L+++
Sbjct: 314 LTNLKRLQLNFNQIQD--ISPLAELTNLETLSLNGN-QITD--VSPLSGLQNLNALSLNG 368
Query: 431 SRITS----AGLRHLKPLK 445
++IT +GL +LK L
Sbjct: 369 NQITDISPLSGLTNLKVLH 387
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 102/203 (50%), Gaps = 23/203 (11%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L + +TD + L + +NL+ L F QI D + L L+NL +L + N Q
Sbjct: 212 LEDNQITD--ISPLSEFTNLKGL-FLVLNQIKD--ISPLSQLTNLKALELKFNQI---QD 263
Query: 124 MKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ A L NL LDLE + T I L GL L L++ + D+ PLSGLTN
Sbjct: 264 ISPLAELQNLTWLDLEDNQITDISP----LSGLTNLTFLSLTYNQI---QDVSPLSGLTN 316
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK LQ++ +++ D I+ L L L L+L G +T LS L +L L+LN Q++
Sbjct: 317 LKRLQLNFNQIQD--ISPLAELTNLETLSLNGNQITDVS--PLSGLQNLNALSLNGNQIT 372
Query: 242 DDGCEKFSKIGSLKVLNLGFNEI 264
D S + +LKVL+L N I
Sbjct: 373 D--ISPLSGLTNLKVLHLTENPI 393
>gi|290991638|ref|XP_002678442.1| leucine rich repeat domain-containing protein [Naegleria gruberi]
gi|284092054|gb|EFC45698.1| leucine rich repeat domain-containing protein [Naegleria gruberi]
Length = 646
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 165/352 (46%), Gaps = 48/352 (13%)
Query: 64 LSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITA 121
L+ S VT +GL L+ S+ +S+ C +++G L+ L L +L SL+ NN I +
Sbjct: 256 LTSSAVTSLTGLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDVSLESLNETNNNGIKS 315
Query: 122 QGMKAFAG--LINLVKLDL-------ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
G K A L +L++L+L + C + G GL+ L LN+ C D+
Sbjct: 316 NGCKYLANGNLNHLIQLNLSGNRIYSKGCQYLSNG-----GLLTLTHLNLSCCALDFDAC 370
Query: 173 MKPLSG-LTNLKSLQISCSKVTDSGIAYL--KGLQKLTLLNLEGCPVTAA--CLDSLSAL 227
+G L NL L +S + + SGI ++ + LT L+LE C V + + +
Sbjct: 371 QYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSLESCEVRPSDCAFIGNADV 430
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL----------GFNEITDECLVHLKGLTN 277
SL YLN++ +SD+GC+ +K L + +L GF E+T G+
Sbjct: 431 SSLVYLNISNNPISDEGCKNLAKAQFLSLQDLYLRDCQIGSSGFAELT------ANGIGK 484
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L +D+ IGDEG +N++ L L +++S + R ++ L L+ L + +
Sbjct: 485 LTKLYVDNNNIGDEGCLNISSLPFLNLLSVSNNNLGSKGCRCISLLPQLQHLTISRNNVG 544
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+G L +L+ L +LDL G I D+G L C G LT+ V
Sbjct: 545 SSGCLYLNALSKLEYLDLVGNDIRDAGCEIL-----------CNGSLTNVRV 585
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 143/341 (41%), Gaps = 61/341 (17%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSL-QISCSKVTDSGIAYLKG-- 202
GL +L+ + S+ K C + + +K L+ L +L+SL + + + + +G YL
Sbjct: 266 GLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDVSLESLNETNNNGIKSNGCKYLANGN 325
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLK---VL 257
L L LNL G + + LS G +L +LNL+ C L D C+ G+LK L
Sbjct: 326 LNHLIQLNLSGNRIYSKGCQYLSNGGLLTLTHLNLSCCALDFDACQYLGN-GNLKNLVQL 384
Query: 258 NLGFNEITDECLVHL--KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
NL N + + + + NL L+L+SC + + +F G +D
Sbjct: 385 NLSKNMLIGSGIQFIFNGNMPNLTWLSLESCEV--------------RPSDCAFIGNAD- 429
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+SSL LN+ I+D G L L+ DL+ LR
Sbjct: 430 -------VSSLVYLNISNNPISDEGCKNLAKAQFLSLQDLY-----------------LR 465
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
+I G + I L+ L + N N+ D+ IS L L L+VSN+ + S
Sbjct: 466 DCQIGSSGFAELTANGIGKLTKLYV----DNNNIGDEGCLNISSLPFLNLLSVSNNNLGS 521
Query: 436 AGLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSRDL 470
G R + L L+ LT+ V + N + +L+ DL
Sbjct: 522 KGCRCISLLPQLQHLTISRNNVGSSGCLYLNALSKLEYLDL 562
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 92/198 (46%), Gaps = 38/198 (19%)
Query: 292 GLVNLTGLTNLESINLSFT-------GISDGSLRKLAGLS-SLKSLN-LDARQITDTGLA 342
+ +LTGLT+LE ++ + +++G L+ L L SL+SLN + I G
Sbjct: 260 AVTSLTGLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDVSLESLNETNNNGIKSNGCK 319
Query: 343 ALTS--LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
L + L L L+L G RI G YL N GG LT LT
Sbjct: 320 YLANGNLNHLIQLNLSGNRIYSKGCQYLSN----------GGLLT------------LTH 357
Query: 401 LNLSQNCNLTDKTLELISG--LTGLVSLNVSNSRITSAGLRHL--KPLKNLRSLTLESCK 456
LNLS C L + + L LV LN+S + + +G++ + + NL L+LESC+
Sbjct: 358 LNLSC-CALDFDACQYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSLESCE 416
Query: 457 VTANDIKRLQSRDLPNLV 474
V +D + + D+ +LV
Sbjct: 417 VRPSDCAFIGNADVSSLV 434
>gi|84043398|ref|XP_951489.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348218|gb|AAQ15545.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62359994|gb|AAX80418.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1110
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 131/471 (27%), Positives = 202/471 (42%), Gaps = 70/471 (14%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSNL 108
SG V D+ L L DC +L+ L+ ++CIQ++D +E L RG+ +
Sbjct: 303 SGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIGVV 362
Query: 109 TSLS-----FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+L ++ ++ + + +LV+L LE C + G + L L+ LE LN+
Sbjct: 363 WALPKLRVLHMKDVHLSEPSLDSVGTGGSLVRLSLENC-KGFGDVKPLSNLVTLEELNLH 421
Query: 164 WCNCITDSDMKPLSGLTNLKSLQI--------------------------SCSKVTD-SG 196
+C+ +T S M L L L+ L + C K+T S
Sbjct: 422 YCDKVT-SGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCKKITSISA 480
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
IA L L++L + N C VT+ + L L L+ +++D+ S+ SL
Sbjct: 481 IASLTALEELNIDN--SCNVTSG-WNVFGTLHQLRVATLSNTRINDENIRHVSECKSLNT 537
Query: 257 LNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
LNL F +ITD + L +T LE LNLD C +G+ L L +++ + DG
Sbjct: 538 LNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGKLPKARILSMKECYMGDG 595
Query: 316 SLRK---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
++ L SL LNL+ R + + AL+++ L L L A + +F
Sbjct: 596 YAQQCSILGNSKSLVKLNLE-RSMGFISVKALSNIATLEELVLDHA----EEVCCIPSFS 650
Query: 373 NLRSLEICGGGLTDAG---VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
L L + TD K+I + SL LNLS +TD + ++S L+ L LNV+
Sbjct: 651 CLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTD--ISVLSSLSTLEELNVN 708
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVSFRPE 479
G L L LR L + A DI L S + L L FR E
Sbjct: 709 CCNGIRKGWESLGKLPLLRVAILSDTNIAAKDIACLSSCKTLVKLKFFRCE 759
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 119/426 (27%), Positives = 179/426 (42%), Gaps = 80/426 (18%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL---DLERCTRIHG--GLVNLKGL-- 154
L+ L L L FR NN I + ++ L +L D + T I G L NLK L
Sbjct: 173 LKRLHMLKRLCFRSNN-IDNNDARHLFNIVTLEELAITDTMQLTNIRGISRLTNLKCLEL 231
Query: 155 ----------------MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGI 197
KL L++ CN ITD+ P+S L L+ L + SC +T GI
Sbjct: 232 NSTDIDDSCIGEISACAKLSKLSVSECNNITDA--TPISQLAALEELNLNSCYHIT-KGI 288
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSD-------------- 242
L L +L +L+L G PV CL L GSL LN++ C QL+D
Sbjct: 289 ETLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELN 348
Query: 243 -DGCEKFSK-------IGSLKVLNLGFNEITDECL-----------------------VH 271
+GC + ++ + L+VL++ +++ L
Sbjct: 349 LNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGSLVRLSLENCKGFGDVKP 408
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLN 330
L L LE LNL C G+ L L L ++L T + + SL + S L SLN
Sbjct: 409 LSNLVTLEELNLHYCDKVTSGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLN 468
Query: 331 LD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
L ++I T ++A+ SLT L L++ + SG LR + + D +
Sbjct: 469 LSHCKKI--TSISAIASLTALEELNIDNSCNVTSGWNVFGTLHQLRVATLSNTRINDENI 526
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
+H+ + SL LNL+ ++TD T +S +T L LN+ G+ L L R
Sbjct: 527 RHVSECKSLNTLNLAFCKDITDVT--ALSKITMLEELNLDCCPNIRKGIETLGKLPKARI 584
Query: 450 LTLESC 455
L+++ C
Sbjct: 585 LSMKEC 590
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 118/441 (26%), Positives = 187/441 (42%), Gaps = 81/441 (18%)
Query: 98 GLEHLRGLSNLTSLS-FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLM 155
G ++ LSN+ +L ++A + +F+ L L L+L + T I+G + N+
Sbjct: 619 GFISVKALSNIATLEELVLDHAEEVCCIPSFSCLPRLRVLNL-KYTDINGDVTKNISESK 677
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L SLN+ C +TD + LS L+ L+ L ++C G L L L + L
Sbjct: 678 SLRSLNLSHCKWVTD--ISVLSSLSTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTN 735
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSD-------------------DGCEKFSKIGS-- 253
+ A + LS+ +L L RC+ LSD DG + + +G+
Sbjct: 736 IAAKDIACLSSCKTLVKLKFFRCEKLSDVTVVYKIQSLEELIVRSCSDGLKGLNDLGTLP 795
Query: 254 --------------LKVLNLGFN------------EITDECLVHLKGLTNLESLNLDSCG 287
+ V ++G + E+TD + L +T+LE L+L CG
Sbjct: 796 RLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMRKELTD--ITPLSNITSLEELSLRECG 853
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
EG+ L L L+S++L + IS+ +L + S+ SLNL A T ++ +++L
Sbjct: 854 DNLEGVGTLGKLPRLKSLDLGLSDISNSALNDIFLSRSITSLNL-ASSWKLTDISHISNL 912
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQN 406
T L L+L SG L LR L + +T +I SL LNL ++
Sbjct: 913 TALEELNLRRCYPITSGWEALSELPRLRVLNLESASVTTRYDGYYISRCKSLVTLNL-ES 971
Query: 407 CNLTD-------KTL---------ELISGLTGLVS------LNVSNSRITSAGLRHLKPL 444
C++TD KTL EL G + L + LN+ S I LR ++P
Sbjct: 972 CDMTDASCLANIKTLEELHIGRCKELRRGFSPLFTLPRLRILNLICSLIKDEDLREIQPP 1031
Query: 445 KNLRSLTLESCKVTANDIKRL 465
+ L L C+ NDI L
Sbjct: 1032 HTIEELNLSYCE-NLNDITPL 1051
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTL 208
++ L LE LN++ C IT S + LS L L+ L + + VT Y + + L
Sbjct: 908 HISNLTALEELNLRRCYPIT-SGWEALSELPRLRVLNLESASVTTRYDGYYISRCKSLVT 966
Query: 209 LNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
LNLE C +T A+CL ++ L L ++ RC+ G + L++LNL + I DE
Sbjct: 967 LNLESCDMTDASCLANIKTLEEL---HIGRCKELRRGFSPLFTLPRLRILNLICSLIKDE 1023
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L ++ +E LNL C E L ++T L ++SI S + R G SL
Sbjct: 1024 DLREIQPPHTIEELNLSYC----ENLNDITPLGRIKSIKKLHLRQSHDARRPTEGFRSLL 1079
Query: 328 SL 329
L
Sbjct: 1080 EL 1081
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 149/330 (45%), Gaps = 37/330 (11%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
++ SD +E + +L L +T + + + +L +L L C G+ L
Sbjct: 805 VRGSDISVESIGTSKSLVRLHIEMRKELT--DITPLSNITSLEELSLRECGDNLEGVGTL 862
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLN 210
L +L+SL++ + I++S + + ++ SL ++ S K+TD I+++ L L LN
Sbjct: 863 GKLPRLKSLDLGLSD-ISNSALNDIFLSRSITSLNLASSWKLTD--ISHISNLTALEELN 919
Query: 211 LEGC-PVTAACLDSLSALGSLFYLNLNRCQLSD--DGCEKFSKIGSLKVLNLGFNEITD- 266
L C P+T+ ++LS L L LNL ++ DG S+ SL LNL ++TD
Sbjct: 920 LRRCYPITSG-WEALSELPRLRVLNLESASVTTRYDG-YYISRCKSLVTLNLESCDMTDA 977
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
CL ++K LE L++ C G L L L +NL + I D LR++ ++
Sbjct: 978 SCLANIK---TLEELHIGRCKELRRGFSPLFTLPRLRILNLICSLIKDEDLREIQPPHTI 1034
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ LN L+ +L +T L RI +LR + R
Sbjct: 1035 EELN----------LSYCENLNDITPL----GRIKSIKKLHLRQSHDARR--------PT 1072
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G + + +L L+ ++L+ C +D +EL
Sbjct: 1073 EGFRSLLELPCLSWVDLNNVCGWSDVYVEL 1102
>gi|320168649|gb|EFW45548.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 977
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 139/330 (42%), Gaps = 6/330 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GLS LT L + N I++ AF GL L ++DL I
Sbjct: 93 QITSISANAFTGLSALTYLVLKENE-ISSISANAFTGLSALKEVDLSNNRIIDLPTAAFA 151
Query: 153 GLMKLESLNIK--WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL ++ +L + N I + + +GLT LK L + + ++ A G LT L
Sbjct: 152 GLPQMSTLRLSRNQFNSIPSTAIT--TGLTALKELYLDANNISSISTAAFTGFPALTYLY 209
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L P+T ++ + L L +L L Q+S F+ + +L L+L N+I+
Sbjct: 210 LADNPITDIPANTFADLTELRHLYLRNNQISSVSATAFAGLSALNYLDLSMNKISSLSAS 269
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
GLT L L L S + + T L L+ + LS ++ GL +L L
Sbjct: 270 VFTGLTALSILYLQSNQLSSIPASSFTDLAALQHLYLSSNQFTNLPAAAFTGLDALIVLW 329
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L +T +ALTSL+ L +LDL +IT A L L + +
Sbjct: 330 LSGNPLTSVPTSALTSLSALRNLDLSSTKITSISANAFAGLNALTVLALHYNPIASISGS 389
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
L++LT L+LS N LT L GL
Sbjct: 390 AFTGLTALTALHLS-NTPLTTLPPGLFQGL 418
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 142/326 (43%), Gaps = 12/326 (3%)
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+ E T I G+ + + L+S N IT + +GLT L L ++ +++T
Sbjct: 45 NTESLTTIPSGIPSNTTHLSLQS------NQITSISVNAFTGLTALIWLYLTDNQITSIS 98
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
GL LT L L+ +++ ++ + L +L ++L+ ++ D F+ + +
Sbjct: 99 ANAFTGLSALTYLVLKENEISSISANAFTGLSALKEVDLSNNRIIDLPTAAFAGLPQMST 158
Query: 257 LNLG---FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
L L FN I + GLT L+ L LD+ I TG L + L+ I+
Sbjct: 159 LRLSRNQFNSIPSTAIT--TGLTALKELYLDANNISSISTAAFTGFPALTYLYLADNPIT 216
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
D A L+ L+ L L QI+ A L+ L +LDL +I+ A+
Sbjct: 217 DIPANTFADLTELRHLYLRNNQISSVSATAFAGLSALNYLDLSMNKISSLSASVFTGLTA 276
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L L + L+ DL++L L LS N T+ +GL L+ L +S + +
Sbjct: 277 LSILYLQSNQLSSIPASSFTDLAALQHLYLSSN-QFTNLPAAAFTGLDALIVLWLSGNPL 335
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVTA 459
TS L L LR+L L S K+T+
Sbjct: 336 TSVPTSALTSLSALRNLDLSSTKITS 361
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 21/205 (10%)
Query: 283 LDSCGIGDEGLVNLTGLT---NLESINLSFTGISDG--------------SLRKLAGLSS 325
+D+CG G G+ + +G T N ES+ +GI S+ GL++
Sbjct: 26 VDACGTG--GVCDCSGTTVICNTESLTTIPSGIPSNTTHLSLQSNQITSISVNAFTGLTA 83
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L L L QIT A T L+ LT+L L I+ A L+ +++ +
Sbjct: 84 LIWLYLTDNQITSISANAFTGLSALTYLVLKENEISSISANAFTGLSALKEVDLSNNRII 143
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
D L ++ L LS+N + + + +GLT L L + + I+S
Sbjct: 144 DLPTAAFAGLPQMSTLRLSRNQFNSIPSTAITTGLTALKELYLDANNISSISTAAFTGFP 203
Query: 446 NLRSLTLESCKVTANDIKRLQSRDL 470
L L L +T DI DL
Sbjct: 204 ALTYLYLADNPIT--DIPANTFADL 226
>gi|17549135|ref|NP_522475.1| GALA protein 1 [Ralstonia solanacearum GMI1000]
gi|17431386|emb|CAD18065.1| lrr-gala family type III effector protein (gala 1) [Ralstonia
solanacearum GMI1000]
Length = 661
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 176/377 (46%), Gaps = 28/377 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++D+ G+ + D+G L +++ SLD +F I G L + LTSL N
Sbjct: 188 TTLTALDIRGNGIGDAGAQALAANTSITSLDASFN-DIGVAGARALAANTTLTSLDLGFN 246
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
AI +G++A A +L L + C G L L S+++ CN I + + L
Sbjct: 247 -AIGDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLT-CNHIGEEGAEGL 304
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T L SL ++ + ++D G A L G LT L C+ N N
Sbjct: 305 AANTVLTSLDLTRNSISDRGAAALAGNTTLTSL----------CV------------NFN 342
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ G ++ +L L++ +N I D + L L SL++ + IG EG L
Sbjct: 343 --DIYGRGARWLAENTTLTTLDISYNPIGDWGALGLADNMTLRSLSVVAGRIGVEGARAL 400
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
G T L ++++S I + + LA ++L +L+L + ++ A + T L LD+
Sbjct: 401 AGNTTLTTLDISVNAIGNEGAQALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDIG 460
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
RI +GA L + L +L + G + AG + + SLT LN+SQN ++ +
Sbjct: 461 ENRIEAAGAQALADNTALTTLRVTGNQIGMAGAQALAANRSLTKLNISQN-DIRSAGAQA 519
Query: 417 ISGLTGLVSLNVSNSRI 433
++ T L SL+VS++ I
Sbjct: 520 LAANTSLTSLDVSSASI 536
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 152/348 (43%), Gaps = 3/348 (0%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDL+ + + + G L + L SLD ISD G L G + LTSL N+ I
Sbjct: 288 SVDLTCNHIGEEGAEGLAANTVLTSLDLTRN-SISDRGAAALAGNTTLTSLCVNFND-IY 345
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G + A L LD+ G + L M L SL++ I + L+G T
Sbjct: 346 GRGARWLAENTTLTTLDISYNPIGDWGALGLADNMTLRSLSVV-AGRIGVEGARALAGNT 404
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L +L IS + + + G L LT L+L C + AA ++ A +L L++ ++
Sbjct: 405 TLTTLDISVNAIGNEGAQALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRI 464
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
G + + +L L + N+I L +L LN+ I G L T
Sbjct: 465 EAAGAQALADNTALTTLRVTGNQIGMAGAQALAANRSLTKLNISQNDIRSAGAQALAANT 524
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
+L S+++S I + LA +S+ LN++ I D G AL + LT L I
Sbjct: 525 SLTSLDVSSASIGAAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYACDNFI 584
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
+G L L SL I G + DAGVK + ++LT L + + +
Sbjct: 585 GTAGVQALAANTRLTSLSIWGNRIGDAGVKALAANTTLTKLTIGKRVD 632
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 133/304 (43%), Gaps = 52/304 (17%)
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT L++ G + A +L+A S+ L+ + + G + +L L+LGFN I
Sbjct: 190 LTALDIRGNGIGDAGAQALAANTSITSLDASFNDIGVAGARALAANTTLTSLDLGFNAIG 249
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
DE L L T+L SL + SC IGD G L T L S++L+ I + LA +
Sbjct: 250 DEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLTCNHIGEEGAEGLAANTV 309
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHL-----DLFG--AR-----------------IT 361
L SL+L I+D G AAL T LT L D++G AR I
Sbjct: 310 LTSLDLTRNSISDRGAAALAGNTTLTSLCVNFNDIYGRGARWLAENTTLTTLDISYNPIG 369
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN-----------CNLT 410
D GA L + LRSL + G + G + + ++LT L++S N N T
Sbjct: 370 DWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTTLTTLDISVNAIGNEGAQALAANAT 429
Query: 411 DKTLELIS------------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
TL L S T L SL++ +RI +AG + L + L + +VT
Sbjct: 430 LTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIEAAGAQALAD-----NTALTTLRVT 484
Query: 459 ANDI 462
N I
Sbjct: 485 GNQI 488
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 113/403 (28%), Positives = 181/403 (44%), Gaps = 14/403 (3%)
Query: 30 DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN 89
+ L L LG + + D+ + +A+ +SL S+ + ++ D+G L + + L S+D
Sbjct: 235 NTTLTSLDLG-FNAIGDEGLQALATN-TSLTSLTVGSCEIGDAGAAALANNTALTSVDLT 292
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR---IHG 146
C I + G E L + LTSL RN +I+ +G A AG L L C I+G
Sbjct: 293 -CNHIGEEGAEGLAANTVLTSLDLTRN-SISDRGAAALAGNTTLTSL----CVNFNDIYG 346
Query: 147 -GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G L L +L+I + N I D L+ L+SL + ++ G L G
Sbjct: 347 RGARWLAENTTLTTLDISY-NPIGDWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTT 405
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT L++ + +L+A +L L+L C+L E F +L L++G N I
Sbjct: 406 LTTLDISVNAIGNEGAQALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIE 465
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
L T L +L + IG G L +L +N+S I + LA +S
Sbjct: 466 AAGAQALADNTALTTLRVTGNQIGMAGAQALAANRSLTKLNISQNDIRSAGAQALAANTS 525
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L SL++ + I G AL + T +T L++ I D+GA L L SL C +
Sbjct: 526 LTSLDVSSASIGAAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYACDNFIG 585
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
AGV+ + + LT L++ N + D ++ ++ T L L +
Sbjct: 586 TAGVQALAANTRLTSLSIWGN-RIGDAGVKALAANTTLTKLTI 627
>gi|119485475|ref|ZP_01619803.1| Rab family protein [Lyngbya sp. PCC 8106]
gi|119457231|gb|EAW38357.1| Rab family protein [Lyngbya sp. PCC 8106]
Length = 457
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 169/328 (51%), Gaps = 32/328 (9%)
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A L+ +++LDL R ++I L L L L LN+ N ITD + PLS LTNL L
Sbjct: 94 AQKSLLQVIELDLSR-SKI-SDLSPLITLPHLTRLNLSE-NQITD--LTPLSNLTNLTRL 148
Query: 186 QISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+S + + D S I+ L LQ L L E L LS L L L+L+ ++SD
Sbjct: 149 NLSSNLIQDLSPISELPNLQILLLYKNE-----IEVLSPLSNLSGLTELSLDSNKISD-- 201
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
S++ +L L+L N+I D ++ L NL L+L+ + D L+ + L NL
Sbjct: 202 ISSLSELNNLTNLSLSENQIQDLSIIA--NLENLTQLSLNGNKVNDISLI--SELQNLTK 257
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+NL I D S + LS+LK LNLD+ ++ D ++AL+SLT L L L IT+
Sbjct: 258 LNLKTNQIEDLSSL--SNLSNLKELNLDSNKLID--VSALSSLTQLETLSLSENNITN-- 311
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L N +NL +L++ ++D IK LSSLT NL+++ NL D + I L+ L
Sbjct: 312 IQPLSNLENLITLQLRSNQISD-----IKALSSLT--NLTEDLNLIDNQISDIKPLSNLK 364
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTL 452
N+S ++ + LKPL +L L +
Sbjct: 365 --NLSRVGLSKNQISDLKPLSDLSKLVI 390
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 90/193 (46%), Gaps = 23/193 (11%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD N I +S L L+ L +LS NN Q + L NL+ L L R +I
Sbjct: 282 LDSNKLIDVS-----ALSSLTQLETLSLSENNITNIQ---PLSNLENLITLQL-RSNQIS 332
Query: 146 GGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
++K L L +L + N I + SD+KPLS L NL + +S ++++D + L L
Sbjct: 333 ----DIKALSSLTNL-TEDLNLIDNQISDIKPLSNLKNLSRVGLSKNQISD--LKPLSDL 385
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
KL +L L+ +T LS L +L LNL Q+ E S + +L L L N
Sbjct: 386 SKLVILYLDENKITEV--QPLSNLTNLTELNLWNNQIK--TIESLSTLDNLTYLGLQENP 441
Query: 264 IT-DECLVHLKGL 275
I EC V K +
Sbjct: 442 IEKKECPVQPKSI 454
>gi|84043404|ref|XP_951492.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348240|gb|AAQ15567.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62358736|gb|AAX79191.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1394
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 140/506 (27%), Positives = 208/506 (41%), Gaps = 76/506 (15%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 556 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRNISHFSKCKNLVTLDLSFC 613
Query: 92 IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G++ +I
Sbjct: 614 NKLLD-----VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIV 668
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+LVK+ L+ C G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 669 SLGNGGSLVKVSLDDCAGF-GDVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLPQLRVL 726
Query: 186 QI--------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 218
+ C K+T S IA L L++L + N C VT+
Sbjct: 727 DLGRTQVDNNSLENICTSSIPLVSLNLSHCKKITSISSIASLTALEELNIDN--SCNVTS 784
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 277
+ L L L+ +++D+ S+ SL LNL F +ITD + L +T
Sbjct: 785 G-WNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNLAFCKDITD--VTALSKITM 841
Query: 278 LESLNLDSCGIGDEGLVNLTGLTN--LESINLSFTGISDGS-LRKLAGLSSLKSLNLDAR 334
LE LNLD C +G+ L L + S+ + G SD L SL LNL+ R
Sbjct: 842 LEELNLDCCPNIRKGIETLGTLPKAGILSMKECYMGDSDAQQCSILWNSKSLVKLNLE-R 900
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+ + AL+++ L L L AR ++ LR L + D K+I +
Sbjct: 901 SMGFISVKALSNIATLEELVLGHARKVCCIPSF-SCLPRLRVLNLKYTDFNDDVTKNISE 959
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
SL LNLS +TD ++ +++N N G L L LR L
Sbjct: 960 SKSLQSLNLSHCKWVTDISVLSSLLALEELNVNCCNG--IRKGWESLGKLPLLRVAILSD 1017
Query: 455 CKVTANDIKRLQS-RDLPNLVSFRPE 479
+TA DI L S + L L FR E
Sbjct: 1018 TNITAKDIACLSSCKTLVKLKFFRCE 1043
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 116/433 (26%), Positives = 177/433 (40%), Gaps = 79/433 (18%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL L+L + +
Sbjct: 189 IDNNDARHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTDIDDSCIGEISA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
KL L++ CN ITD+ P+S L+ L+ L + SC +T GI L L +L +L+L
Sbjct: 247 CAKLSKLSVSECNNITDA--TPISQLSALEELNLNSCYHIT-KGIGTLGMLLRLRILDLS 303
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------ 250
G PV CL L GSL LN++ C QL+D +GC + ++
Sbjct: 304 GVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIGVVW 363
Query: 251 -IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS 308
+ L+VL++ +++ L + L ++LD+C G GD L L+ + LE +N+
Sbjct: 364 ALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQ 421
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITD---TGLAA--------LTSLTGLT------ 351
+ L L L+ LN+ I+ TG+ A + S+TGL
Sbjct: 422 KCADIISGVGSLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLIDVEALA 481
Query: 352 ------HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD------------------- 386
L L G D+G L N L+ L++ G +
Sbjct: 482 NILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSH 541
Query: 387 ----AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
V HI L +L LNLS NC + E I L L +SN+ IT + H
Sbjct: 542 CWKMTNVSHISSLEALNELNLS-NCFGINAGWEAIEKLQQLHVAILSNTHITDRNISHFS 600
Query: 443 PLKNLRSLTLESC 455
KNL +L L C
Sbjct: 601 KCKNLVTLDLSFC 613
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 103/406 (25%), Positives = 180/406 (44%), Gaps = 38/406 (9%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLSG++ + L L + SL+ + C ++++ + H+ L L L+ I A
Sbjct: 513 LDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINA 570
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G +A L L L + + L +L++ +CN + D + LS +T
Sbjct: 571 -GWEAIEKLQQLHVAILSNTHITDRNISHFSKCKNLVTLDLSFCNKLLD--VTALSNITT 627
Query: 182 LKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L+ L + SCS + G++ L L +L +LN++G + + + SL GSL ++L+ C
Sbjct: 628 LEELNLDSCSNIR-KGLSVLGELPRLCVLNIKGVQLEDSVIVSLGNGGSLVKVSLDDCA- 685
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
GF ++T L L LE LNL C G+ L L
Sbjct: 686 -------------------GFGDVTP-----LSNLVTLEELNLHYCDKVTSGMGTLGRLP 721
Query: 301 NLESINLSFTGISDGSLRKLAGLS-SLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGA 358
L ++L T + + SL + S L SLNL ++I T ++++ SLT L L++ +
Sbjct: 722 QLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCKKI--TSISSIASLTALEELNIDNS 779
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
SG LR + + D ++++ + SL LNL+ ++TD T +S
Sbjct: 780 CNVTSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNLAFCKDITDVT--ALS 837
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+T L LN+ G+ L L L+++ C + +D ++
Sbjct: 838 KITMLEELNLDCCPNIRKGIETLGTLPKAGILSMKECYMGDSDAQQ 883
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 147/324 (45%), Gaps = 34/324 (10%)
Query: 168 ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
IT D+ LS L L+ C K++D + Y +Q L L + C L++L
Sbjct: 1020 ITAKDIACLSSCKTLVKLKFFRCEKLSDVTVVY--EIQSLEELIVRSCSDGLKGLNALGT 1077
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS 285
L L +L L + SD E SL L++ E +TD L +T+LE L+L
Sbjct: 1078 LPRLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMREDLTDT--TPLSNITSLEELSLRE 1135
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAAL 344
CG G+ L L L+S++L + IS+ +L + S+ SLNLD+ ++TD ++ +
Sbjct: 1136 CGDNLGGVGTLEKLPRLKSLDLGLSDISNSTLNYIFLSRSITSLNLDSSWELTD--ISHI 1193
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNL 403
++LT L L+L G SG L LR L + +T +I SL LNL
Sbjct: 1194 SNLTALEELNLGGCYYITSGWKALSELPRLRVLNLESTRVTTRYDGYYISRCKSLVTLNL 1253
Query: 404 SQNCNLTD-------KTL---------ELISGLTGLVS------LNVSNSRITSAGLRHL 441
+ C++TD KTL EL G + L + LN+ S IT LR +
Sbjct: 1254 -ELCDMTDASYIANIKTLEELHIGKCKELTQGFSALFTLPRLRILNLICSLITDEDLREI 1312
Query: 442 KPLKNLRSLTLESCKVTANDIKRL 465
+P + L L C V NDI L
Sbjct: 1313 QPPHTIEELNLSYC-VELNDITPL 1335
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 110/461 (23%), Positives = 186/461 (40%), Gaps = 67/461 (14%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL----------------RGL 105
++L +D D ++ + +LQSL+ + C ++D + +G
Sbjct: 942 LNLKYTDFNDDVTKNISESKSLQSLNLSHCKWVTDISVLSSLLALEELNVNCCNGIRKGW 1001
Query: 106 SNLTSLSFRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+L L R + ITA+ + + LVKL RC ++ V + + LE L
Sbjct: 1002 ESLGKLPLLRVAILSDTNITAKDIACLSSCKTLVKLKFFRCEKLSDVTV-VYEIQSLEEL 1060
Query: 161 NIKWCNCITDSDMKPLSGL------TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++ C+ +K L+ L L + S ++ I K L +L + E
Sbjct: 1061 IVRSCS----DGLKGLNALGTLPRLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMREDL 1116
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL----- 269
T LS + SL L+L C + G K+ LK L+LG ++I++ L
Sbjct: 1117 TDTTP----LSNITSLEELSLRECGDNLGGVGTLEKLPRLKSLDLGLSDISNSTLNYIFL 1172
Query: 270 ------------------VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
H+ LT LE LNL C G L+ L L +NL T
Sbjct: 1173 SRSITSLNLDSSWELTDISHISNLTALEELNLGGCYYITSGWKALSELPRLRVLNLESTR 1232
Query: 312 IS---DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
++ DG ++ SL +LNL+ +TD A ++ L L + + G + L
Sbjct: 1233 VTTRYDGYY--ISRCKSLVTLNLELCDMTDASYIA--NIKTLEELHIGKCKELTQGFSAL 1288
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLN 427
LR L + +TD ++ I+ ++ LNLS L D T L I + L
Sbjct: 1289 FTLPRLRILNLICSLITDEDLREIQPPHTIEELNLSYCVELNDITPLGRIKSIKKLHLRQ 1348
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 468
++R ++ G R L L L + L++ V+++ ++ L R
Sbjct: 1349 SHDARRSTEGFRSLLELPCLSWVDLKNASVSSDILRELGKR 1389
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 98/420 (23%), Positives = 164/420 (39%), Gaps = 93/420 (22%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + + D + ++ +C +L +L+ FC I+D
Sbjct: 800 LSNTRINDENIRYVSECKSLNTLNLAFCKDITD--------------------------- 832
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ A + + L +L+L+ C I G+ L L K L++K C + DSD + S L N K
Sbjct: 833 VTALSKITMLEELNLDCCPNIRKGIETLGTLPKAGILSMKECY-MGDSDAQQCSILWNSK 891
Query: 184 SL-----QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
SL + S ++ ++ + L++L L G C+ S
Sbjct: 892 SLVKLNLERSMGFISVKALSNIATLEELVL----GHARKVCCIPS--------------- 932
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT 297
FS + L+VLNL + + D+ ++ +L+SLNL C + D +++
Sbjct: 933 ---------FSCLPRLRVLNLKYTDFNDDVTKNISESKSLQSLNLSHCKWVTDISVLSSL 983
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
++N GI G L L L+ L IT +A L+S L L F
Sbjct: 984 LALEELNVNCC-NGIRKG-WESLGKLPLLRVAILSDTNITAKDIACLSSCKTLVKLKFFR 1041
Query: 358 -ARITDSGAAYLRNFKNLRSLEI--CGGGL----------------------TDAGVKHI 392
+++D Y ++L L + C GL +D V+ I
Sbjct: 1042 CEKLSDVTVVY--EIQSLEELIVRSCSDGLKGLNALGTLPRLRFLLLRNVRGSDISVESI 1099
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
SL L++ +LTD T +S +T L L++ G+ L+ L L+SL L
Sbjct: 1100 GTSKSLVRLHIEMREDLTDTT--PLSNITSLEELSLRECGDNLGGVGTLEKLPRLKSLDL 1157
>gi|434399050|ref|YP_007133054.1| leucine-rich repeat-containing protein [Stanieria cyanosphaera PCC
7437]
gi|428270147|gb|AFZ36088.1| leucine-rich repeat-containing protein [Stanieria cyanosphaera PCC
7437]
Length = 842
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 185/384 (48%), Gaps = 46/384 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLE---HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+KD S LQSL + + +E L+ L NLTSLS R A+ + L NL
Sbjct: 169 IKDISPLQSLTNLRELNLKHSPIEDLTPLKSLINLTSLSVR---VYDAKNLIPLKYLTNL 225
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSK 191
+L + R +++ + L+ L KL L+++ + SD+ L LTNL L ++
Sbjct: 226 TQLSV-RASQL-NNISFLQSLTKLTHLSLRSIKVQVNRASDLSALQSLTNLTHLTLNGYG 283
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPV------------TAACL--------DSLSALGSLF 231
D ++ L+ L LT L L+G + T+ CL SL AL L
Sbjct: 284 TID--LSVLQSLTNLTQLTLKGFSINNISLLGAFPKLTSLCLIENEINDFSSLGALTKLT 341
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L LN+ Q+SD + +L L L N+I+D L L+ LTNL SL L+ I D
Sbjct: 342 NLILNKNQISD--LIPLQSLTNLTSLALNKNQISD--LTPLQSLTNLTSLALNKNQISD- 396
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGL 350
L L LTNL S+ L+ ISD L L L++L SL L QI+D T L +LT+LT L
Sbjct: 397 -LTPLQSLTNLTSLTLNKNQISD--LTPLQSLTNLTSLCLVKNQISDLTPLQSLTNLTNL 453
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T+ + +ITD L++ L +L + ++D + L++LT L L ++ T
Sbjct: 454 TYTNSHSTQITDFTP--LQSLTKLTNLTLNKNEISD--FTPLISLTNLTFLYLRRSWWST 509
Query: 411 DKTLELISGLT-GLVSLNVSNSRI 433
+ + ++ L L SL +S RI
Sbjct: 510 IERINQLNSLPNNLRSLALSTQRI 533
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 130/450 (28%), Positives = 188/450 (41%), Gaps = 106/450 (23%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D L+ ++ L+NLTSL+ N + + F N + L L+
Sbjct: 108 EIDDDNLDRIKSLTNLTSLNLSTPNVLIYG--RTFHYTHNHI-----------TDLKPLR 154
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------------ 194
L KLE L + N I D+ PL LTNL+ L + S + D
Sbjct: 155 SLAKLEKLELS-ANPI--KDISPLQSLTNLRELNLKHSPIEDLTPLKSLINLTSLSVRVY 211
Query: 195 ------------------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ I++L+ L KLT L+L V LSAL SL
Sbjct: 212 DAKNLIPLKYLTNLTQLSVRASQLNNISFLQSLTKLTHLSLRSIKVQVNRASDLSALQSL 271
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNL---------------GFNEITDECLVH---- 271
NL L+ G S + SL L F ++T CL+
Sbjct: 272 --TNLTHLTLNGYGTIDLSVLQSLTNLTQLTLKGFSINNISLLGAFPKLTSLCLIENEIN 329
Query: 272 ----LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L LT L +L L+ I D L+ L LTNL S+ L+ ISD L L L++L
Sbjct: 330 DFSSLGALTKLTNLILNKNQISD--LIPLQSLTNLTSLALNKNQISD--LTPLQSLTNLT 385
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD- 386
SL L+ QI+D L L SLT LT L L +I+D L++ NL SL + ++D
Sbjct: 386 SLALNKNQISD--LTPLQSLTNLTSLTLNKNQISDLTP--LQSLTNLTSLCLVKNQISDL 441
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
++ + +L++LT N S + +TD T + LT L +L ++ + I+ PL +
Sbjct: 442 TPLQSLTNLTNLTYTN-SHSTQITDFT--PLQSLTKLTNLTLNKNEISD-----FTPLIS 493
Query: 447 LRSLTL----ESCKVTANDIKRLQSRDLPN 472
L +LT S T I +L S LPN
Sbjct: 494 LTNLTFLYLRRSWWSTIERINQLNS--LPN 521
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 128/285 (44%), Gaps = 46/285 (16%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S L L+ +NL L N I L+ L L+ LT F NN I+ G AF L
Sbjct: 263 SDLSALQSLTNLTHLTLNGYGTIDLSVLQSLTNLTQLTLKGFSINN-ISLLG--AFPKLT 319
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+L ++ E +L L KL +L + N SD+ PL LTNL SL ++ ++
Sbjct: 320 SLCLIENEI-----NDFSSLGALTKLTNLIL---NKNQISDLIPLQSLTNLTSLALNKNQ 371
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
++D L L +L +L L LN+ Q+SD +
Sbjct: 372 ISD--------------------------LTPLQSLTNLTSLALNKNQISD--LTPLQSL 403
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLSFT 310
+L L L N+I+D L L+ LTNL SL L I D L +LT LTNL N T
Sbjct: 404 TNLTSLTLNKNQISD--LTPLQSLTNLTSLCLVKNQISDLTPLQSLTNLTNLTYTNSHST 461
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
I+D + L L+ L +L L+ +I+D L SLT LT L L
Sbjct: 462 QITDFT--PLQSLTKLTNLTLNKNEISD--FTPLISLTNLTFLYL 502
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 158/363 (43%), Gaps = 77/363 (21%)
Query: 172 DMKPLSGLTNLKSLQISCS-----------------------KVTDSGIAYLKGLQKLTL 208
D + L L NL+ L S S ++ D + +K L LT
Sbjct: 66 DFRLLQCLPNLQQLNGSGSWSGNDLSVLQSLTKLTTLSLLDCEIDDDNLDRIKSLTNLTS 125
Query: 209 LNLEGCPV---------TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS---LKV 256
LNL V T + L L SL L + +LS + + S + S L+
Sbjct: 126 LNLSTPNVLIYGRTFHYTHNHITDLKPLRSL--AKLEKLELSANPIKDISPLQSLTNLRE 183
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLSFTGISD- 314
LNL + I D L LK L NL SL S + D + L+ L LTNL +++ + +++
Sbjct: 184 LNLKHSPIED--LTPLKSLINLTSL---SVRVYDAKNLIPLKYLTNLTQLSVRASQLNNI 238
Query: 315 ---GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
SL KL L SL+S+ + + +D L+AL SLT LTHL L G D + L++
Sbjct: 239 SFLQSLTKLTHL-SLRSIKVQVNRASD--LSALQSLTNLTHLTLNGYGTID--LSVLQSL 293
Query: 372 KNLRSLEICGGGLTDAGV--------------KHIKDLSSL----TLLNLSQNCNLTDKT 413
NL L + G + + + I D SSL L NL N N
Sbjct: 294 TNLTQLTLKGFSINNISLLGAFPKLTSLCLIENEINDFSSLGALTKLTNLILNKNQISDL 353
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+ L S LT L SL ++ ++I + L L+ L NL SL L +++ D+ LQS L NL
Sbjct: 354 IPLQS-LTNLTSLALNKNQI--SDLTPLQSLTNLTSLALNKNQIS--DLTPLQS--LTNL 406
Query: 474 VSF 476
S
Sbjct: 407 TSL 409
>gi|290984372|ref|XP_002674901.1| predicted protein [Naegleria gruberi]
gi|284088494|gb|EFC42157.1| predicted protein [Naegleria gruberi]
Length = 599
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 101/419 (24%), Positives = 176/419 (42%), Gaps = 68/419 (16%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++ + + G H+ L LD N + I + G+E + + LT L
Sbjct: 167 SKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNM-IGNEGIELISRMEQLTDLDV 225
Query: 114 RRNNAITAQGMKAFAGLINLVKLDL-----------------------ERCTRI-HGGLV 149
NN I ++G+K+ + +L L++ C I G
Sbjct: 226 MDNN-IRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNLITACNNIGMKGFS 284
Query: 150 NLKGLMKLESLNI-----KWCNCITDSD----------------MKPLSGLTNLKSLQIS 188
+L L+ LESL I K + I + + P+S L+NL L I
Sbjct: 285 SLSTLLNLESLVILGLDGKSTDFIREMNQLTRLEFYGSNLEPKGFDPISHLSNLTFLTIR 344
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA---------------------CLDSLSAL 227
+ D + + +KLT LN+ C + ++S++ L
Sbjct: 345 GRNIADGDLECIGQFKKLTTLNVPSCNINQGFKSICGLKNLTFLDLSYNKIESVESITNL 404
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
SL L++N ++ +G + S++ +L L +G N I DE + +L + L +L +
Sbjct: 405 KSLTQLDINGNRIGHEGAKSISQLDNLTNLQIGHNLIQDEGIKYLSTMQCLTTLGVAENQ 464
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
I EG ++ L S++L+ I + L+ L++L L + +I D G ++++
Sbjct: 465 ISIEGAKFISKSHQLTSLDLTNNVIETEGAKILSELNNLTGLFVYGNRIRDEGAKYISTM 524
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT LD+ ITD GA + N L +L I + D G K I + LT+L++ N
Sbjct: 525 QQLTILDIAYNEITDEGAKAISNLDQLSTLYIYSNEICDEGAKSICGMKQLTILDIDYN 583
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 136/301 (45%), Gaps = 41/301 (13%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G++ K D I + + L ++ GS++ G + SNL L I+DG LE +
Sbjct: 299 GLDGKSTDFI-REMNQLTRLEFYGSNLEPKGFDPISHLSNLTFLTIR-GRNIADGDLECI 356
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESL 160
LT+L+ N QG K+ GL NL LDL +I + NLK L +L+ +
Sbjct: 357 GQFKKLTTLNVPSCN--INQGFKSICGLKNLTFLDLSY-NKIESVESITNLKSLTQLD-I 412
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL-------NLEG 213
N N I K +S L NL +LQI + + D GI YL +Q LT L ++EG
Sbjct: 413 N---GNRIGHEGAKSISQLDNLTNLQIGHNLIQDEGIKYLSTMQCLTTLGVAENQISIEG 469
Query: 214 CPVT--------------------AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
A L L+ L LF NR + D+G + S +
Sbjct: 470 AKFISKSHQLTSLDLTNNVIETEGAKILSELNNLTGLFVYG-NR--IRDEGAKYISTMQQ 526
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
L +L++ +NEITDE + L L +L + S I DEG ++ G+ L +++ + +S
Sbjct: 527 LTILDIAYNEITDEGAKAISNLDQLSTLYIYSNEICDEGAKSICGMKQLTILDIDYNVLS 586
Query: 314 D 314
+
Sbjct: 587 E 587
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 124/273 (45%), Gaps = 3/273 (1%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L+IS ++ + ++ +++LT L++ + ++S L L LN+ + ++ +G
Sbjct: 103 LEISYCRLEAEDVNFIGEMKQLTELDISLNNINCKGAITISQLSKLTKLNVYQTKMGVEG 162
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
++ SK+ L L +G N + E H+ + L L++++ IG+EG+ ++ + L
Sbjct: 163 AKELSKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNMIGNEGIELISRMEQLTD 222
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+++ I ++ L + L +LN+ I D G L + L +L I G
Sbjct: 223 LDVMDNNIRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNLITACNNIGMKG 282
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
+ L NL SL I GL I++++ LT L NL K + IS L+ L
Sbjct: 283 FSSLSTLLNLESLVIL--GLDGKSTDFIREMNQLTRLEF-YGSNLEPKGFDPISHLSNLT 339
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L + I L + K L +L + SC +
Sbjct: 340 FLTIRGRNIADGDLECIGQFKKLTTLNVPSCNI 372
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 27/210 (12%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL +D++G+ + G + NL +L + I D G+++L + LT+L N
Sbjct: 406 SLTQLDINGNRIGHEGAKSISQLDNLTNLQIGHNL-IQDEGIKYLSTMQCLTTLGVAEN- 463
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I+ +G K + L LDL N I K LS
Sbjct: 464 QISIEGAKFISKSHQLTSLDLTN-------------------------NVIETEGAKILS 498
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L NL L + +++ D G Y+ +Q+LT+L++ +T ++S L L L +
Sbjct: 499 ELNNLTGLFVYGNRIRDEGAKYISTMQQLTILDIAYNEITDEGAKAISNLDQLSTLYIYS 558
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
++ D+G + + L +L++ +N +++E
Sbjct: 559 NEICDEGAKSICGMKQLTILDIDYNVLSEE 588
>gi|357615345|gb|EHJ69606.1| hypothetical protein KGM_07261 [Danaus plexippus]
Length = 438
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 160/325 (49%), Gaps = 43/325 (13%)
Query: 50 DVIASQGSSLLSVDLSG-SDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGLEHL-RGL 105
D +A+ L S+ LSG VTD+ L + L+ LD + C Q++D L + + L
Sbjct: 132 DAVAAL-PGLESLSLSGCYSVTDAALASAFATELPALKRLDLSLCKQVTDSSLGRIAQSL 190
Query: 106 SNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNL------KGLMKL 157
NL L +T G+ A GL L +L+L C ++ G+ +L +G +L
Sbjct: 191 KNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLRSCWHVNDDGIAHLCGGGEARGTPEL 250
Query: 158 ESLNIKWCNCITDSDMK-PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
E L ++ C +TD +K +GL LKS+ +S C VTD+G+ +L L L +NL C
Sbjct: 251 EHLGLQDCQRLTDEALKHAATGLPKLKSINLSFCVAVTDAGLRHLARLPHLEDVNLRACD 310
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK- 273
+SD G ++ G L+ L++ F +++ DE L H
Sbjct: 311 -----------------------GVSDAGVAHLAESGRLRALDVSFCDKVGDEALSHATL 347
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNL 331
GL+ L L+L +C + DEGL + L+ LE++N+ T ++D LR L GL +LK+++L
Sbjct: 348 GLSGLRCLSLSACRLTDEGLERVARLSQLETLNIGQCTQVTDRGLRALGEGLKNLKAIDL 407
Query: 332 -DARQITDTGLAALTSLTGLTHLDL 355
IT GL + L L+ L+L
Sbjct: 408 YGCTCITHEGLDHIVKLPRLSVLNL 432
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 147/322 (45%), Gaps = 43/322 (13%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
+ L LESL++ C +TD+ + + L LK L +S C +VTDS + + + L+ L
Sbjct: 134 VAALPGLESLSLSGCYSVTDAALASAFATELPALKRLDLSLCKQVTDSSLGRIAQSLKNL 193
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC--EKFSKIGSLKVLNLGFNEI 264
L L GC C ++D G + ++ +
Sbjct: 194 EELELGGC-----------------------CNVTDTGLLLIAWGLRKLRRLNLRSCWHV 230
Query: 265 TDECLVHL------KGLTNLESLNLDSCG-IGDEGLVNL-TGLTNLESINLSF-TGISDG 315
D+ + HL +G LE L L C + DE L + TGL L+SINLSF ++D
Sbjct: 231 NDDGIAHLCGGGEARGTPELEHLGLQDCQRLTDEALKHAATGLPKLKSINLSFCVAVTDA 290
Query: 316 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR-NFK 372
LR LA L L+ +NL A ++D G+A L L LD+ F ++ D ++
Sbjct: 291 GLRHLARLPHLEDVNLRACDGVSDAGVAHLAESGRLRALDVSFCDKVGDEALSHATLGLS 350
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSN- 430
LR L + LTD G++ + LS L LN+ Q +TD+ L + GL L ++++
Sbjct: 351 GLRCLSLSACRLTDEGLERVARLSQLETLNIGQCTQVTDRGLRALGEGLKNLKAIDLYGC 410
Query: 431 SRITSAGLRHLKPLKNLRSLTL 452
+ IT GL H+ L L L L
Sbjct: 411 TCITHEGLDHIVKLPRLSVLNL 432
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 137/286 (47%), Gaps = 27/286 (9%)
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC--EKFS-KIGSLKVL 257
+G+++L +L+L D+++AL L L+L+ C D F+ ++ +LK L
Sbjct: 116 RGVRRLQVLSLR-----RGLRDAVAALPGLESLSLSGCYSVTDAALASAFATELPALKRL 170
Query: 258 NLGF-NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGL--VNLTGLTNLESINLSFTGI 312
+L ++TD L + + L NLE L L C + D GL + S +
Sbjct: 171 DLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLRSCWHV 230
Query: 313 SDGSLRKLAG------LSSLKSLNL-DARQITDTGLA-ALTSLTGLTHLDL-FGARITDS 363
+D + L G L+ L L D +++TD L A T L L ++L F +TD+
Sbjct: 231 NDDGIAHLCGGGEARGTPELEHLGLQDCQRLTDEALKHAATGLPKLKSINLSFCVAVTDA 290
Query: 364 GAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GL 420
G +L +L +L C G ++DAGV H+ + L L++S + D+ L + GL
Sbjct: 291 GLRHLARLPHLEDVNLRACDG-VSDAGVAHLAESGRLRALDVSFCDKVGDEALSHATLGL 349
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 465
+GL L++S R+T GL + L L +L + C +VT ++ L
Sbjct: 350 SGLRCLSLSACRLTDEGLERVARLSQLETLNIGQCTQVTDRGLRAL 395
>gi|357150706|ref|XP_003575549.1| PREDICTED: F-box/LRR-repeat protein 3-like [Brachypodium
distachyon]
Length = 666
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 134/485 (27%), Positives = 222/485 (45%), Gaps = 68/485 (14%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNF 90
A++ +CL + GV + +D + + L +VDLS D L + L+ L+
Sbjct: 110 AVRQVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAAAGLRELNLEK 169
Query: 91 CIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGL 148
C+ ++D GL + G L LSF+ I+ G+ L LD+ + L
Sbjct: 170 CLGVTDMGLAKVAVGCPKLEKLSFKWCREISDIGVDLLVKKCRELRNLDISYLEVSNESL 229
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KG 202
++ L KLE L++ C CI D ++ LS G +L+S+ +S C VT G+A L
Sbjct: 230 RSISTLEKLEELSMVGCLCIDDKGLELLSRGSNSLQSVDVSRCDHVTSEGLASLIDGHSF 289
Query: 203 LQK------------------------LTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNR 237
LQK LT+L L+G V+++ L +++ +L + L++
Sbjct: 290 LQKLNAADSLHEIGQNFLSKLATLKETLTMLRLDGFEVSSSLLLAIAEGCNNLVEVGLSK 349
Query: 238 CQ-LSDDGCEKF-SKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGI------ 288
C ++D+G ++ G L+ ++L N +TD LV + D+C +
Sbjct: 350 CNGVTDEGISSLVARCGYLRKIDLTCCNLLTDNALVSIA----------DNCKMLECLLL 399
Query: 289 ------GDEGLVNL-TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTG 340
++GL + T NL I+L+ G++D +L+ LA S L L L I+D G
Sbjct: 400 ESCSSLSEKGLERIATCCPNLSEIDLTDCGVNDAALQHLAKCSELLILKLGLCSSISDKG 459
Query: 341 LAALTS-LTGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGVKHIKDLS 396
L ++S LT +DL+ ITD G A L + K ++ L +C +TD G+ H+ L
Sbjct: 460 LGFISSKCVKLTEVDLYRCNSITDDGLATLAKGCKKIKMLNLCYCNKITDGGLSHLGSLE 519
Query: 397 SLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLE 453
LT L L +T + ++ G LV +++ + +GL L NLR LT+
Sbjct: 520 ELTNLELRCLVRITGIGISSVAIGCKSLVEIDLKRCYSVDDSGLWALARYALNLRQLTIS 579
Query: 454 SCKVT 458
C+VT
Sbjct: 580 YCQVT 584
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 124/287 (43%), Gaps = 61/287 (21%)
Query: 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-L 105
K ++ IA+ +L +DL+ V D+ L HL CS L L C ISD GL +
Sbjct: 408 KGLERIATCCPNLSEIDLTDCGVNDAALQHLAKCSELLILKLGLCSSISDKGLGFISSKC 467
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
LT + R N+IT G+ A KG K++ LN+ +C
Sbjct: 468 VKLTEVDLYRCNSITDDGLATLA-----------------------KGCKKIKMLNLCYC 504
Query: 166 NCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N ITD + L L L +L++ C ++T GI+ V C
Sbjct: 505 NKITDGGLSHLGSLEELTNLELRCLVRITGIGIS----------------SVAIGC---- 544
Query: 225 SALGSLFYLNLNRCQLSDD-GCEKFSKIG-SLKVLNLGFNEITDECLVHLKGLTNLESLN 282
SL ++L RC DD G ++ +L+ L + + ++T L HL L++L L
Sbjct: 545 ---KSLVEIDLKRCYSVDDSGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLRCLQ 599
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
D +V+L+ ++ +E ++ G L+KL LSSLKS+
Sbjct: 600 -------DVKMVHLSWVS-IEGFEMALRAAC-GRLKKLKMLSSLKSV 637
>gi|343420997|emb|CCD18942.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 623
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 135/422 (31%), Positives = 205/422 (48%), Gaps = 67/422 (15%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL S+ IT +
Sbjct: 7 TDVSPLSLI-----SNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCTGIT--DVPP 57
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------- 170
+ L L L+L CT I + L L +LE+LN+ +C ITD
Sbjct: 58 LSKLSRLETLNLMYCTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLM 116
Query: 171 -----SDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+D+ PLS ++NL++L +S C+ +TD + L + L L L C + L
Sbjct: 117 YCTGITDVSPLSLISNLRTLDLSHCTGITD--VLPLSLMSNLCSLYLSHCTGITD-VPPL 173
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
S L L LNL C D SK+ L+ LNL + ITD + L ++NL +L+L
Sbjct: 174 SKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSLISNLRTLDL 230
Query: 284 DSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
C GI D ++ L+ ++NL S+ LS TGI+D + L+ LS L++LNL + TG+
Sbjct: 231 SHCTGITD--VLPLSLMSNLCSVYLSHCTGITD--VPPLSKLSRLETLNL----MYCTGI 282
Query: 342 AALTSLTGLTHLD----LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS 396
++ L+ L+ L+ ++ ITD + L NL SL + G+TD V + LS
Sbjct: 283 TDVSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSKLS 338
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP---LKNLRSLTLE 453
L LNL +TD + +S ++ L L+VS G+ + P L NLR+L L
Sbjct: 339 RLETLNLMYCTGITD--VSPLSLMSRLEMLDVSG----CTGITDVSPLSDLSNLRTLDLS 392
Query: 454 SC 455
C
Sbjct: 393 YC 394
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 130/418 (31%), Positives = 193/418 (46%), Gaps = 80/418 (19%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL S+ IT +
Sbjct: 214 TDVSPLSLI-----SNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCTGIT--DVPP 264
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------- 170
+ L L L+L CT I + L L +LE+LN+ +C ITD
Sbjct: 265 LSKLSRLETLNLMYCTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSLMSNLCSLYLS 323
Query: 171 -----SDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+D+ PLS L+ L++L + C+ +TD ++ L + +L +L++ GC + L
Sbjct: 324 HCTGITDVPPLSKLSRLETLNLMYCTGITD--VSPLSLMSRLEMLDVSGCTGITD-VSPL 380
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNL 283
S L +L L+L+ C D S+I L L + G ITD L LK + LE L L
Sbjct: 381 SDLSNLRTLDLSYCTGITD-VSPLSEIIELANLYMIGLTSITDVSL--LKKVKKLEVLYL 437
Query: 284 DSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITD-TG 340
C I D L+ L+ LE ++L + TGI+D S L+ LS L+ LD R T T
Sbjct: 438 SGCTSITDVS--PLSTLSGLEKLDLRYCTGITDVS--PLSTLSGLE--KLDLRYCTGITD 491
Query: 341 LAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSS 397
++ L++L+GL LDL G ITD + L L +L++ C G ++D + L S
Sbjct: 492 VSPLSTLSGLGKLDLSGCTGITD--VSPLSTLSRLETLDLSECPGVMSD-----VDSLCS 544
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L +L L +S I A LR + LK LR+L L C
Sbjct: 545 LRMLR----------------------ELRLSRLAINDAVLRDIVVLKCLRTLDLSHC 580
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 145/465 (31%), Positives = 219/465 (47%), Gaps = 83/465 (17%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
S+L ++DLS + +TD ++ L SNL S+ + C I+D + L LS L +L+
Sbjct: 16 SNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCTGITD--VPPLSKLSRLETLNLMY 71
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD----- 170
IT + + L L L+L CT I + L L +LE+LN+ +C ITD
Sbjct: 72 CTGIT--DVSPLSKLSRLETLNLMYCTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLS 128
Query: 171 ----------------SDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEG 213
+D+ PLS ++NL SL +S C+ +TD + L L +L LNL
Sbjct: 129 LISNLRTLDLSHCTGITDVLPLSLMSNLCSLYLSHCTGITD--VPPLSKLSRLETLNLMY 186
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL 272
C + LS L L LNL C D S I +L+ L+L ITD ++ L
Sbjct: 187 CTGITD-VSPLSKLSRLETLNLMYCTGITD-VSPLSLISNLRTLDLSHCTGITD--VLPL 242
Query: 273 KGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN 330
++NL S+ L C GI D + L+ L+ LE++NL + TGI+D S L+ LS L++LN
Sbjct: 243 SLMSNLCSVYLSHCTGITD--VPPLSKLSRLETLNLMYCTGITDVS--PLSKLSRLETLN 298
Query: 331 L-DARQITD------------------TGLAALTSLTGLTHLD----LFGARITDSGAAY 367
L ITD TG+ + L+ L+ L+ ++ ITD +
Sbjct: 299 LMYCTGITDVSPLSLMSNLCSLYLSHCTGITDVPPLSKLSRLETLNLMYCTGITD--VSP 356
Query: 368 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L L L++ G G+TD V + DLS+L L+LS +TD +S L+ ++ L
Sbjct: 357 LSLMSRLEMLDVSGCTGITD--VSPLSDLSNLRTLDLSYCTGITD-----VSPLSEIIEL 409
Query: 427 N----VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ + IT L LK +K L L L C + D+ L +
Sbjct: 410 ANLYMIGLTSITDVSL--LKKVKKLEVLYLSGCT-SITDVSPLST 451
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 124/251 (49%), Gaps = 40/251 (15%)
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG-----LE----HLRGLSNLTSL 111
+D+SG + +TD L D SNL++LD ++C I+D +E ++ GL+++T +
Sbjct: 366 LDVSGCTGITDVS--PLSDLSNLRTLDLSYCTGITDVSPLSEIIELANLYMIGLTSITDV 423
Query: 112 SFRR----------NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
S + + + + + L L KLDL CT I + L L LE L+
Sbjct: 424 SLLKKVKKLEVLYLSGCTSITDVSPLSTLSGLEKLDLRYCTGI-TDVSPLSTLSGLEKLD 482
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+++C ITD + PLS L+ L L +S C+ +TD ++ L L +L L+L CP +
Sbjct: 483 LRYCTGITD--VSPLSTLSGLGKLDLSGCTGITD--VSPLSTLSRLETLDLSECPGVMSD 538
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITD----------ECL 269
+DSL +L L L L+R ++D + L+ L+L ++TD E L
Sbjct: 539 VDSLCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDLSHCTDVTDVSPLSTVIRLEVL 598
Query: 270 VHLKGLTNLES 280
V L+G T L S
Sbjct: 599 V-LRGYTGLRS 608
>gi|320170955|gb|EFW47854.1| hypothetical protein CAOG_05792 [Capsaspora owczarzaki ATCC 30864]
Length = 727
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 160/376 (42%), Gaps = 35/376 (9%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCT 142
SLD+N I + GL+ LT LS N IT+ F G+ L L L + T
Sbjct: 74 SLDYNLITSIPA---DAFTGLTALTYLSLYAN-PITSIPAGTFTGVTALTYLSLSSNQIT 129
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
I G L L SL + + N IT + LT L L + +++T A+ G
Sbjct: 130 SIPAGA--FTDLTALRSLFL-YANLITSISANAFTSLTALTYLHLYGNQITSISNAF-TG 185
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L LT L+L +T+ ++ + L +L L+L Q++ + F+ + +L L L N
Sbjct: 186 LTALTELHLYNNHITSISANAFTDLTALTELSLISNQITSIPADTFTGLTALTYLYLNSN 245
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
+IT GLT L L+L+S I T LT L ++ + I+ S AG
Sbjct: 246 QITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDLTALTYLSFNSNSITSISANAFAG 305
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
L++L L + IT A LT LT+L L +IT I G
Sbjct: 306 LTALTYLFFSSNLITSISANAFAGLTALTYLSLGSNQIT----------------SIPAG 349
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
T GV ++LT L+L N +T + +GLT L L + ++ITS
Sbjct: 350 TFT--GV------TALTYLSLDSN-QITSIPADTFTGLTALTYLYLGTNQITSLPSSSFT 400
Query: 443 PLKNLRSLTLESCKVT 458
L L L L+S +T
Sbjct: 401 NLTALTYLVLQSNPIT 416
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 135/315 (42%), Gaps = 15/315 (4%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L L++ + N IT +GLT L L + + +T G+ LT L+
Sbjct: 64 FTGLTALTFLSLDY-NLITSIPADAFTGLTALTYLSLYANPITSIPAGTFTGVTALTYLS 122
Query: 211 LEGCPVT---AACLDSLSALGSLF-YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L +T A L+AL SLF Y NL ++ F+ + +L L+L N+IT
Sbjct: 123 LSSNQITSIPAGAFTDLTALRSLFLYANL----ITSISANAFTSLTALTYLHLYGNQITS 178
Query: 267 --ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS 324
L LT L N I +LT LT L I+ T I + GL+
Sbjct: 179 ISNAFTGLTALTELHLYNNHITSISANAFTDLTALTELSLISNQITSIPADTFT---GLT 235
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
+L L L++ QIT T LT LT+L L IT A + L L +
Sbjct: 236 ALTYLYLNSNQITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDLTALTYLSFNSNSI 295
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
T L++LT L S N +T + +GLT L L++ +++ITS +
Sbjct: 296 TSISANAFAGLTALTYLFFSSNL-ITSISANAFAGLTALTYLSLGSNQITSIPAGTFTGV 354
Query: 445 KNLRSLTLESCKVTA 459
L L+L+S ++T+
Sbjct: 355 TALTYLSLDSNQITS 369
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 132/295 (44%), Gaps = 4/295 (1%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT +GLT L L + + +T GL LT L+L P+T+ + +
Sbjct: 54 NPITSIPTNAFTGLTALTFLSLDYNLITSIPADAFTGLTALTYLSLYANPITSIPAGTFT 113
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ +L YL+L+ Q++ F+ + +L+ L L N IT LT L L+L
Sbjct: 114 GVTALTYLSLSSNQITSIPAGAFTDLTALRSLFLYANLITSISANAFTSLTALTYLHLYG 173
Query: 286 CGIGDEGLVN-LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
I + N TGLT L ++L I+ S L++L L+L + QIT
Sbjct: 174 NQI--TSISNAFTGLTALTELHLYNNHITSISANAFTDLTALTELSLISNQITSIPADTF 231
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
T LT LT+L L +IT A L L + +T DL++LT L+ +
Sbjct: 232 TGLTALTYLYLNSNQITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDLTALTYLSFN 291
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
N ++T + +GLT L L S++ ITS L L L+L S ++T+
Sbjct: 292 SN-SITSISANAFAGLTALTYLFFSSNLITSISANAFAGLTALTYLSLGSNQITS 345
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 2/227 (0%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L +N ++ F+ + +L L+L +N IT GLT L L+L + I
Sbjct: 49 LYINSNPITSIPTNAFTGLTALTFLSLDYNLITSIPADAFTGLTALTYLSLYANPITSIP 108
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
TG+T L ++LS I+ L++L+SL L A IT A TSLT LT+
Sbjct: 109 AGTFTGVTALTYLSLSSNQITSIPAGAFTDLTALRSLFLYANLITSISANAFTSLTALTY 168
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L L+G +IT A+ L L + +T DL++LT L+L N +T
Sbjct: 169 LHLYGNQITSISNAF-TGLTALTELHLYNNHITSISANAFTDLTALTELSLISN-QITSI 226
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
+ +GLT L L +++++ITS L L L+L S +T+
Sbjct: 227 PADTFTGLTALTYLYLNSNQITSIPADTFTGLTALTYLSLNSNSITS 273
>gi|290982306|ref|XP_002673871.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284087458|gb|EFC41127.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 529
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 193/390 (49%), Gaps = 13/390 (3%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
+++I+ L ++D+S + + +SG+ LK L L+ ++C I G++ +R ++ L
Sbjct: 146 IEMISKFMKCLTNLDISFNSLGNSGMKQLK-LDKLTDLNVSYC-DIDATGIQFIRNMTCL 203
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
L+ NN I +G + L NL +LD+ G ++ + L+ L+I N I
Sbjct: 204 IKLNISGNN-INCKGALLLSNLKNLQELDIASACLKEEGAKHISRMDNLKFLSISH-NQI 261
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ K +S L+ L+ L IS + G+ Y+ K L+ LT +++ G + ++++
Sbjct: 262 LNGGAKAISSLSKLEILHISNCDIGCEGLQYISKNLKNLTEIDIGGNHFGMDGVIVIASM 321
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV--HLKGLTNLESLNLDS 285
+L L++ L G + SK+ +L LN+ N D+ + + L NL +L +
Sbjct: 322 NNLKVLSIAESCLGLLGVQYLSKMENLTYLNISDN--IDDIFIGESINDLQNLTTLLYTN 379
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAAL 344
+ + + ++ LT L ++N+ T ISD + L + L L +L D IT G+ +
Sbjct: 380 NSLSMDEAITISSLTQLTTLNIESTEISDVHIEILCSSLHHLINLYADTNFITSWGVKLI 439
Query: 345 T-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
+ S+ L L L G RI D G Y+ + ++LR L +C + D GV+ + + + L L
Sbjct: 440 SESMIDLESLYLSGNRIGDEGLTYICSLQHLRILGVCNCEIGDRGVQVLVNCAPKKLREL 499
Query: 404 SQNC--NLTDKTLELISGLTGLVSLNVSNS 431
+C N+T K +LI + L S+ + N+
Sbjct: 500 LIDCNENITSKGCKLIYSIPQLNSIYLENN 529
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 160/323 (49%), Gaps = 23/323 (7%)
Query: 147 GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G+ + MK L +L+I + N + +S MK L L L L +S + +GI +++ +
Sbjct: 145 GIEMISKFMKCLTNLDISF-NSLGNSGMKQLK-LDKLTDLNVSYCDIDATGIQFIRNMTC 202
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L LN+ G + LS L +L L++ L ++G + S++ +LK L++ N+I
Sbjct: 203 LIKLNISGNNINCKGALLLSNLKNLQELDIASACLKEEGAKHISRMDNLKFLSISHNQIL 262
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLTNLESINLSFTGISDGSLRKLAGLS 324
+ + L+ LE L++ +C IG EGL ++ L NL I++ + +A ++
Sbjct: 263 NGGAKAISSLSKLEILHISNCDIGCEGLQYISKNLKNLTEIDIGGNHFGMDGVIVIASMN 322
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHL-------DLF-GARITDSGAAYLRNFKNLRS 376
+LK L++ + G+ L+ + LT+L D+F G I D +NL +
Sbjct: 323 NLKVLSIAESCLGLLGVQYLSKMENLTYLNISDNIDDIFIGESIND--------LQNLTT 374
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSRITS 435
L L+ I L+ LT LN+ ++ ++D +E++ S L L++L + ITS
Sbjct: 375 LLYTNNSLSMDEAITISSLTQLTTLNI-ESTEISDVHIEILCSSLHHLINLYADTNFITS 433
Query: 436 AGLRHL-KPLKNLRSLTLESCKV 457
G++ + + + +L SL L ++
Sbjct: 434 WGVKLISESMIDLESLYLSGNRI 456
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 16/218 (7%)
Query: 261 FNEIT-DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT-GISDG--- 315
+NEI+ C +H++ T L NL E N ++ + SF+ ISD
Sbjct: 39 WNEISRSACKIHIRIETKLMFQNL---LFTLEKFNNNLMYYHIHGLTFSFSKAISDKTNL 95
Query: 316 -SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG---AAYLRNF 371
S+ KL + +L L++ I D+G+A L L L L++ ++T G +
Sbjct: 96 ISIEKL--MPNLIHLDIYGSDIEDSGVACLCKLKELKILNIGSNKLTSKGRGIEMISKFM 153
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
K L +L+I L ++G+K +K L LT LN+S C++ ++ I +T L+ LN+S +
Sbjct: 154 KCLTNLDISFNSLGNSGMKQLK-LDKLTDLNVSY-CDIDATGIQFIRNMTCLIKLNISGN 211
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 469
I G L LKNL+ L + S + K + D
Sbjct: 212 NINCKGALLLSNLKNLQELDIASACLKEEGAKHISRMD 249
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--LAALTSLTG-LTHLDL 355
+ NL +++ + I D + L L LK LN+ + ++T G + ++ LT+LD+
Sbjct: 102 MPNLIHLDIYGSDIEDSGVACLCKLKELKILNIGSNKLTSKGRGIEMISKFMKCLTNLDI 161
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+ +SG L+ L L + + G++ I++++ L LN+S N N+ K
Sbjct: 162 SFNSLGNSGMKQLK-LDKLTDLNVSYCDIDATGIQFIRNMTCLIKLNISGN-NINCKGAL 219
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
L+S L L L+++++ + G +H+ + NL+ L++ ++ K + S
Sbjct: 220 LLSNLKNLQELDIASACLKEEGAKHISRMDNLKFLSISHNQILNGGAKAISS 271
>gi|241724224|ref|XP_002413721.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
gi|215507537|gb|EEC17029.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
Length = 315
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 159/315 (50%), Gaps = 44/315 (13%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
V+D GL +L NL SLD + C+ ++D GLEH+ +S+L L+ +T+Q M
Sbjct: 12 VSDLGLEYLSLRLKNLVSLDLSMCLSVTDAGLEHIAKISSLKKLTLLGCEDLTSQSMFHL 71
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS---GLTNLKS 184
A +L L I +CN I D+ + ++ GL +L +
Sbjct: 72 A-----------------------TARFRLNCLIISYCNQIEDTGIHMINRGQGLVSLTT 108
Query: 185 LQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQ 239
L ++ +TD G++ + + L+ LT LN+ C + D +S + + L ++N+ C
Sbjct: 109 LNVNACPITDVGLSVVAEKLRDLTALNISECEYVSK--DGISVVAANLRKLRFINMRLCT 166
Query: 240 -LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHL---KGLTNLESLNLDSCGIGDEGLV 294
L++ + +++ SL+V+NL G +IT + + + +G +++ L++ IGD GL
Sbjct: 167 GLTNISLKHLARMSSLEVINLKGCTKITGKGMAFMASGEGQSSVLELDVSFTSIGDTGLR 226
Query: 295 NLT-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALT-SLTGL 350
+ G+ L S++L ISD L ++A L +L +L + +ITD G+ + +L L
Sbjct: 227 YIAQGMQKLRSLSLCGCLISDKGLTRIARNLHALNTLKISRCSRITDNGIKVVACNLKRL 286
Query: 351 THLDLFG-ARITDSG 364
+DL G +RIT +G
Sbjct: 287 RQIDLKGCSRITSAG 301
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 143/286 (50%), Gaps = 36/286 (12%)
Query: 206 LTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GF 261
L L LE C V+ L+ LS L +L L+L+ C ++D G E +KI SLK L L G
Sbjct: 1 LEYLGLEDCALVSDLGLEYLSLRLKNLVSLDLSMCLSVTDAGLEHIAKISSLKKLTLLGC 60
Query: 262 NEITDECLVHLK-GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
++T + + HL L L + C ++ T + IN +
Sbjct: 61 EDLTSQSMFHLATARFRLNCLIISYCNQIED--------TGIHMIN------------RG 100
Query: 321 AGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARIT--DSGAAYLRNFKNLR-- 375
GL SL +LN++A ITD GL+ + L LT L++ D + N + LR
Sbjct: 101 QGLVSLTTLNVNACPITDVGLSVVAEKLRDLTALNISECEYVSKDGISVVAANLRKLRFI 160
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS---GLTGLVSLNVSNSR 432
++ +C G LT+ +KH+ +SSL ++NL +T K + ++ G + ++ L+VS +
Sbjct: 161 NMRLCTG-LTNISLKHLARMSSLEVINLKGCTKITGKGMAFMASGEGQSSVLELDVSFTS 219
Query: 433 ITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
I GLR++ + ++ LRSL+L C ++ + R+ +R+L L + +
Sbjct: 220 IGDTGLRYIAQGMQKLRSLSLCGCLISDKGLTRI-ARNLHALNTLK 264
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 20 LTEVSLEAF-RDCALQDLCLGQYPGVNDKWMDVIAS-QG-SSLLSVDLSGSDVTDSGLIH 76
LT +SL+ R +L+ + L + K M +AS +G SS+L +D+S + + D+GL +
Sbjct: 168 LTNISLKHLARMSSLEVINLKGCTKITGKGMAFMASGEGQSSVLELDVSFTSIGDTGLRY 227
Query: 77 L-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
+ + L+SL C+ ISD GL + R L L +L R + IT G+K A L L
Sbjct: 228 IAQGMQKLRSLSLCGCL-ISDKGLTRIARNLHALNTLKISRCSRITDNGIKVVACNLKRL 286
Query: 134 VKLDLERCTRI 144
++DL+ C+RI
Sbjct: 287 RQIDLKGCSRI 297
>gi|406830031|ref|ZP_11089625.1| leucine-rich repeat-containing protein [Schlesneria paludicola DSM
18645]
Length = 306
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 108/227 (47%), Gaps = 8/227 (3%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ +S +TD L LT L L P+ A + + AL L L L+ Q++D G
Sbjct: 54 VSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAG 113
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
+ S + L+ LNL +TD L L GLT L SLNL+ I GLV L+ L LE+
Sbjct: 114 LQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEA 173
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS- 363
+ L T + S+ L+GL SLK L+L + + A+T L L L L G I D
Sbjct: 174 LYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIKDED 233
Query: 364 ----GAAYLRNFKNLRSLEICGGGLTDAGVKHIK---DLSSLTLLNL 403
A +N + + L + L+DA ++ + DL TL+++
Sbjct: 234 IPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHV 280
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 123/256 (48%), Gaps = 18/256 (7%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
++L+ ++DD ++ + +L L L + I D + + LT LESL LD + D G
Sbjct: 54 VSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAG 113
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
L +++ L +L +NL+ ++DG L LAGL+ L SLNL+ QI GL L+ L L
Sbjct: 114 LQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEA 173
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L L + L ++L+ L + G V+ I L SL L L N T
Sbjct: 174 LYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYL----NGTSI 229
Query: 413 TLELISGLTGLVSLN--------VSNSRITSAGLRHLKPLKNLRSLTL---ESCKVTAND 461
E I L +++ N V + ++ A L + PL +L+ TL KVT +
Sbjct: 230 KDEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTKDG 289
Query: 462 IKRLQSRDLP--NLVS 475
+ RL+ + LP N+VS
Sbjct: 290 VVRLR-KLLPEANVVS 304
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 115/238 (48%), Gaps = 8/238 (3%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ +TD K L+ L +L ++ S + D+ + + L +L L L+ VT A L S+S
Sbjct: 59 HSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAGLQSIS 118
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L L LNL C ++D G + + L LNL +I LV+L L LE+L L +
Sbjct: 119 SLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEALYLQN 178
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+ E + L+GL +L+ ++L+ T G +R + GL SL+ L L+ I D + AL
Sbjct: 179 TVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIKDEDIPALA 238
Query: 346 SLTGL--THLD-LFGARITDSGAAY-----LRNFKNLRSLEICGGGLTDAGVKHIKDL 395
++ H LF + S AA L + K + + G +T GV ++ L
Sbjct: 239 AVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTKDGVVRLRKL 296
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 43/261 (16%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L AF AL L L P + D M VI + + L S+ L + VTD+GL + +L+
Sbjct: 69 LTAFP--ALTTLALTDSP-IGDAHMGVIGAL-TQLESLALDHTQVTDAGLQSISSLEHLR 124
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
L+ C ++DGGL L GL+ LTSL+ T+I
Sbjct: 125 ELNLAGC-SVTDGGLGSLAGLTELTSLNLND--------------------------TQI 157
Query: 145 HG-GLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+G GLV L L +LE+L ++ N + D + + PLSGL +LK L ++ +K + + G
Sbjct: 158 NGLGLVYLSKLNRLEALYLQ--NTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITG 215
Query: 203 LQKLTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKIGSLK-- 255
L L L L G + + +L+A+ L + + LSD E + LK
Sbjct: 216 LPSLERLYLNGTSIKDEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEF 275
Query: 256 -VLNLGFNEITDECLVHLKGL 275
++++ ++T + +V L+ L
Sbjct: 276 TLIHVHGTKVTKDGVVRLRKL 296
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 8/227 (3%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
V LS +TD L L +L I D + + L+ L SL+ +T
Sbjct: 54 VSLSSHSMTDDAAKQLTAFPALTTLALTDS-PIGDAHMGVIGALTQLESLALDHTQ-VTD 111
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+++ + L +L +L+L C+ GGL +L GL +L SLN+ I + LS L
Sbjct: 112 AGLQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQ-INGLGLVYLSKLNR 170
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L++L + + V I L GL+ L +L+L G + +++ L SL L LN +
Sbjct: 171 LEALYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIK 230
Query: 242 DDGCEKFSKI-----GSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
D+ + + K L + ++D L + L +L+ L
Sbjct: 231 DEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTL 277
>gi|320165520|gb|EFW42419.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 694
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 122/270 (45%), Gaps = 1/270 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT + LT L L ++ +++TD GL LT+L L G +T + +
Sbjct: 77 NQITSIPASAFANLTALTELDLTVNQITDISANAFAGLAALTMLFLPGNNITGIPANVFA 136
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L LNL+ QL+ + F+ + +L+ LNL N+IT L L+SL L
Sbjct: 137 GLTALLVLNLSGNQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKSLGLSG 196
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+G T + L I+LS I+ GL++L +L L IT A+T
Sbjct: 197 NRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNNNITSIPANAVT 256
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
LT L +LD+ G + T A+ L L + T L++LT L LS
Sbjct: 257 GLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSN 316
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITS 435
N TD + +GL L+ L ++ +++TS
Sbjct: 317 N-QFTDISANAFAGLPALMELGLAGNQLTS 345
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 153/352 (43%), Gaps = 7/352 (1%)
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCN 166
TSLS N IT+ AFA L L +LDL + T I GL L L + N
Sbjct: 70 TSLSLSINQ-ITSIPASAFANLTALTELDLTVNQITDISANA--FAGLAALTMLFLPGNN 126
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
IT +GLT L L +S +++ GL L LNL+ +T+ +
Sbjct: 127 -ITGIPANVFAGLTALLVLNLSGNQLASIPADAFTGLTALQTLNLQSNQITSISAAGFAD 185
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L +L L L+ +L + F+ +L ++L N+IT GL L +L L +
Sbjct: 186 LAALKSLGLSGNRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNN 245
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
I +TGLT L+ +++S + AGL++L L+L Q T A T
Sbjct: 246 NITSIPANAVTGLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTG 305
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT LT L L + TD A L L + G LT + DL+ L L+LS N
Sbjct: 306 LTALTSLQLSNNQFTDISANAFAGLPALMELGLAGNQLTSIPTSALLDLTLLNFLSLSAN 365
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+T +GLT L SL +S +++TS L L L+L++ T
Sbjct: 366 -QITSIPASAFTGLTALFSLILSRNQLTSIPAAAFSGLTLLNILSLDTNPFT 416
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 139/330 (42%), Gaps = 5/330 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL- 151
QI+ L+ LT L N IT AFAGL L L L I G N+
Sbjct: 78 QITSIPASAFANLTALTELDLTVNQ-ITDISANAFAGLAALTMLFLPG-NNITGIPANVF 135
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
GL L LN+ N + +GLT L++L + +++T A L L L L
Sbjct: 136 AGLTALLVLNLSG-NQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKSLGL 194
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
G + + ++ + +L +++L+ Q++ + F+ + +L L L N IT
Sbjct: 195 SGNRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNNNITSIPANA 254
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+ GLT L+ L++ + GLT L ++LS + S GL++L SL L
Sbjct: 255 VTGLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQL 314
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
Q TD A L L L L G ++T + L + L L + +T
Sbjct: 315 SNNQFTDISANAFAGLPALMELGLAGNQLTSIPTSALLDLTLLNFLSLSANQITSIPASA 374
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
L++L L LS+N LT SGLT
Sbjct: 375 FTGLTALFSLILSRN-QLTSIPAAAFSGLT 403
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 138/327 (42%), Gaps = 22/327 (6%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQG-SSLLSVDLSGSDVTDSGLIHLK 78
+T++S AF L L + PG N + G ++LL ++LSG+ +
Sbjct: 103 ITDISANAF--AGLAALTMLFLPGNNITGIPANVFAGLTALLVLNLSGNQLASIPADAFT 160
Query: 79 DCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRR-----NNAITAQGMKAFAGLI 131
+ LQ+L+ N IS G L L +L LS R NA T Q F L
Sbjct: 161 GLTALQTLNLQSNQITSISAAGFADLAALKSL-GLSGNRLGSNLANAFTNQSALGFIDLS 219
Query: 132 NLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
N +I L + GL L +L + N IT ++GLT LK L +S +
Sbjct: 220 N---------NQITSLLADAFTGLAALNTLFLSNNN-ITSIPANAVTGLTALKYLDVSGN 269
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+ T + GL LT L+L T+ + + L +L L L+ Q +D F+
Sbjct: 270 QFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSNNQFTDISANAFAG 329
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ +L L L N++T L LT L L+L + I TGLT L S+ LS
Sbjct: 330 LPALMELGLAGNQLTSIPTSALLDLTLLNFLSLSANQITSIPASAFTGLTALFSLILSRN 389
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQIT 337
++ +GL+ L L+LD T
Sbjct: 390 QLTSIPAAAFSGLTLLNILSLDTNPFT 416
>gi|18568221|gb|AAL75965.1|AF467461_1 PpaA [Danio rerio]
Length = 386
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 168/367 (45%), Gaps = 63/367 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 63 RGIKKVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQDIPSLRI 116
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC-- 214
LN+ C ITDS + ++ L NL+ L + CS +T++G+ + GL L LNL C
Sbjct: 117 LNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRH 176
Query: 215 --PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
V L ++ + L L L D C+K +TD L H+
Sbjct: 177 VSDVGIGHLAGMTRSAAEGCLTLEHLTLQD--CQK----------------LTDLSLKHI 218
Query: 273 -KGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSL 329
KGL L+ LNL CG I D G+++L+ +T L ++NL S ISD + L+ + +L+
Sbjct: 219 SKGLNKLKGLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLS-MGALRLY 277
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 388
LD F ++ D AY+ + L+SL +C ++D G
Sbjct: 278 GLDVS---------------------FCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDG 316
Query: 389 V-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLK 445
+ + ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL + L
Sbjct: 317 INRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLP 376
Query: 446 NLRSLTL 452
L+ L
Sbjct: 377 CLKVFNL 383
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 167/328 (50%), Gaps = 72/328 (21%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++LSG ++TD+GL H ++D +L+ L+ + C QI+D L +
Sbjct: 89 SLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRI--------------- 133
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AQ +K NL LDL C+ I G L+ GL L+SLN++ C ++D +
Sbjct: 134 ---AQYLK------NLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 184
Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
L+G+T L+ L + C K+TD + ++ KGL KL LNL C ++ A + L
Sbjct: 185 LAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGISDAGMIHL 244
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
S + L+ LNL C +SD G S +G+L++ L++ F +++ D+ L ++ +GL L+
Sbjct: 245 SHMTQLWTLNLRSCDNISDTGIMHLS-MGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLK 303
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITD 338
SL+L SC I D+G IN R + + LK+LN+ +ITD
Sbjct: 304 SLSLCSCHISDDG------------IN-----------RMVRQMHELKTLNIGQCVRITD 340
Query: 339 TGLAALT-SLTGLTHLDLFG-ARITDSG 364
GL + LT LT +DL+G +IT G
Sbjct: 341 KGLELIADHLTQLTGIDLYGCTKITKRG 368
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 138/278 (49%), Gaps = 33/278 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G S++T++GL+ + NL+SL+ C +SD G+ H
Sbjct: 125 ITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 184
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G + L L L+ C ++ L ++ KGL KL+
Sbjct: 185 LAGMTR-----------------SAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKG 227
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T L +L + SC ++D+GI +L G +L L++ C
Sbjct: 228 LNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKV 287
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + LK LN+G ITD+ L
Sbjct: 288 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLEL 345
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINL 307
+ LT L ++L C I GL +T L L+ NL
Sbjct: 346 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNL 383
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 131/253 (51%), Gaps = 42/253 (16%)
Query: 233 LNLNRC-QLSDDGC-EKFSK-IGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG 287
LNL+ C L+D+G F + I SL++LNL +ITD L + + L NLE L+L C
Sbjct: 90 LNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRIAQYLKNLELLDLGGCS 149
Query: 288 -IGDEGLVNLT-GLTNLESINL-SFTGISDGSLRKLAGLS--------SLKSLNL-DARQ 335
I + GL+ + GL NL+S+NL S +SD + LAG++ +L+ L L D ++
Sbjct: 150 NITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQK 209
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+TD L ++ GL L K L +L CGG ++DAG+ H+ +
Sbjct: 210 LTDLSLKHISK--GLNKL------------------KGL-NLSFCGG-ISDAGMIHLSHM 247
Query: 396 SSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTL 452
+ L LNL N++D + L G L L+VS ++ L ++ + L L+SL+L
Sbjct: 248 TQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSL 307
Query: 453 ESCKVTANDIKRL 465
SC ++ + I R+
Sbjct: 308 CSCHISDDGINRM 320
>gi|171912739|ref|ZP_02928209.1| Leucine-rich repeat [Verrucomicrobium spinosum DSM 4136]
Length = 443
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 131/442 (29%), Positives = 202/442 (45%), Gaps = 52/442 (11%)
Query: 20 LTEVSLEAFRDCALQDLCLG-QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
L EV LE L+ L LG Y KW + S + G+ S L HL
Sbjct: 34 LDEVPLEVAELSHLRQLSLGWNYSPSAKKW-----NPDRSFFN---PGAMSNLSELAHLP 85
Query: 79 -DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ +L++ FN C + G LR L NL S S+ RN ++ + L L L+
Sbjct: 86 LEWLDLRATGFNNCAALE--GFSALRSL-NL-SHSYVRN-------IEPLSALSQLQCLE 134
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
L C + + K L +L +L + SD++PL+ L L+ L I +KVTD +
Sbjct: 135 L--C---QTQVTDFKPLQRLGALQQLDLYSTSVSDLEPLAALHALQQLNICSTKVTD--L 187
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L GL L N VT LD L+ + +L L + D + + + L+ L
Sbjct: 188 EPLAGLSSLRQFNFSFTGVTE--LDPLAKITTLQQLEFRLAPIFD--LDALAGLRELQKL 243
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS-FTGISDGS 316
+L E+ D L L GL L+ L + + D G L GL+ L ++L ++D
Sbjct: 244 DLSTTEVRD--LEPLSGLGALQKLYFNHTAVSDLG--PLAGLSALRKLDLRCARRVTD-- 297
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+ LAGL +L+ L L + Q+TD L LT L L HLDL +++D + L + LRS
Sbjct: 298 IGPLAGLHALQRLILASTQVTD--LTPLTELRNLQHLDLSRTKVSD--LSPLTSLTALRS 353
Query: 377 LEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + ++D A + +DL L L+ +Q +L ++G+ L L VS++ +T
Sbjct: 354 LGLTSTQVSDLAPLAAYRDLQRL-FLDSTQVSDLGP-----VAGMNSLQELYVSHTSVTD 407
Query: 436 AGLRHLKPLKNLRSLTLESCKV 457
G L L L+ L+++ C V
Sbjct: 408 LG--PLAGLTELKRLSVDECAV 427
>gi|149173875|ref|ZP_01852504.1| hypothetical protein PM8797T_05540 [Planctomyces maris DSM 8797]
gi|148847405|gb|EDL61739.1| hypothetical protein PM8797T_05540 [Planctomyces maris DSM 8797]
Length = 525
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 162/382 (42%), Gaps = 44/382 (11%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+ G+ TD GL ++ L+ LD + Q++D G+ HL L L L T
Sbjct: 104 IKGNHFTDDGLRYVGQLKKLRYLDLSVNYQLTDAGMRHLESLKQLEHLDLSGCRRFTDAS 163
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK-----WCN------------ 166
K+ A L +L L L + + L L L +L+ L +K W N
Sbjct: 164 GKSLAQLTSLRTLKLRQTSLTPDVLTALSQLPELKHLAVKYSKGMWLNENTIVPLEKMPL 223
Query: 167 ------CITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNL---EGCPV 216
I D ++ ++ + +LKSL + + D ++YL ++++ LN+ G
Sbjct: 224 EELEGMLIKDENLPLIAQMKSLKSLPFEQDRSIKDDQLSYLTHIRQIKKLNIVLTRGTSD 283
Query: 217 TAACLDSLSALGSLFYLNL---NRCQ---LSDDGCEKFSKIGSLKVLNLGF-NEITDECL 269
T+ + L AL L L++ N + L G +KI +LK L +G N E +
Sbjct: 284 TSQLI-QLQALPELETLSISLGNSTEGDPLDRSGLLALAKIPALKELGIGLVNVPILEAI 342
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
H + L +LN+D+ L L ++ L+ + + +SD L + SL+ +
Sbjct: 343 SHCTQVQKL-NLNVDTSQFQPTDLAYLKEMSRLKDLTVQIALVSDDLWATLGQVKSLEEI 401
Query: 330 NL--------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
+ + + T L L +L L LDL G +TD G YL + L L +
Sbjct: 402 SFNWGWPPQKEPPPFSMTSLKQLQNLPRLKGLDLNGFPVTDEGLGYLGQCRTLERLGLNN 461
Query: 382 GGLTDAGVKHIKDLSSLTLLNL 403
+T+AG+ ++ LS L L+
Sbjct: 462 APITNAGLLQLRHLSQLKKLSF 483
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 104/425 (24%), Positives = 187/425 (44%), Gaps = 52/425 (12%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFR-----RNNAITAQGMKAFAGLINLVKLDLERCTRI-H 145
+ ++D L L+ L + +L+ R + N T G++ L L LDL ++
Sbjct: 77 LPLADDDLTVLKELPEVQTLTLRGVHTIKGNHFTDDGLRYVGQLKKLRYLDLSVNYQLTD 136
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS---------- 195
G+ +L+ L +LE L++ C TD+ K L+ LT+L++L++ + +T
Sbjct: 137 AGMRHLESLKQLEHLDLSGCRRFTDASGKSLAQLTSLRTLKLRQTSLTPDVLTALSQLPE 196
Query: 196 ----GIAYLKG----------LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-L 240
+ Y KG L+K+ L LEG + L ++ + SL L + + +
Sbjct: 197 LKHLAVKYSKGMWLNENTIVPLEKMPLEELEGMLIKDENLPLIAQMKSLKSLPFEQDRSI 256
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDEC--LVHLKGLTNLE--SLNLDSCGIGDE----G 292
DD + I +K LN+ T + L+ L+ L LE S++L + GD G
Sbjct: 257 KDDQLSYLTHIRQIKKLNIVLTRGTSDTSQLIQLQALPELETLSISLGNSTEGDPLDRSG 316
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL--DARQITDTGLAALTSLTGL 350
L+ L + L+ + + + L ++ + ++ LNL D Q T LA L ++ L
Sbjct: 317 LLALAKIPALKELGIGLVNVP--ILEAISHCTQVQKLNLNVDTSQFQPTDLAYLKEMSRL 374
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGG--------GLTDAGVKHIKDLSSLTLLN 402
L + A ++D A L K+L + G + +K +++L L L+
Sbjct: 375 KDLTVQIALVSDDLWATLGQVKSLEEISFNWGWPPQKEPPPFSMTSLKQLQNLPRLKGLD 434
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
L+ +TD+ L + L L ++N+ IT+AGL L+ L L+ L+ K+
Sbjct: 435 LN-GFPVTDEGLGYLGQCRTLERLGLNNAPITNAGLLQLRHLSQLKKLSFYGSKIDREPA 493
Query: 463 KRLQS 467
+ L
Sbjct: 494 EELHQ 498
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+DL+G VTD GL +L C L+ L N I++ GL LR LS L LSF
Sbjct: 433 LDLNGFPVTDEGLGYLGQCRTLERLGLNNA-PITNAGLLQLRHLSQLKKLSF 483
>gi|290993787|ref|XP_002679514.1| predicted protein [Naegleria gruberi]
gi|284093131|gb|EFC46770.1| predicted protein [Naegleria gruberi]
Length = 282
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 133/301 (44%), Gaps = 52/301 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+T LKSL + + + D G+ ++ L+ L +LG L RC
Sbjct: 1 ITTLKSLNLHHNNIEDEGVEFISDLK-------------------LESLG------LCRC 35
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI---------- 288
L+ KI SLK L+L N I DEC +L LT+LE L+L I
Sbjct: 36 ALTSKSTSFLCKITSLKKLDLSENIINDECGFYLSMLTDLEELDLHDNSIEGKCFKEFSS 95
Query: 289 ---------------GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+E ++ L+ +L+S+NLS I S+ L+ L++LK L L+
Sbjct: 96 LKKLKTLKLCQNRISQEEAMIYLSQTVSLKSLNLSQNNIGQSSIH-LSNLTNLKELELNL 154
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+IT GL+ ++L L L + + L + LR L I G GL I
Sbjct: 155 CKITKGGLSFFSNLKKLEILKISQNSLGYDDFEELSHLVRLRILSIFGCGLEKNSTNFIG 214
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
++ +L L + N N+ D L +SGL L L + ++RIT G++HL +K L L L
Sbjct: 215 NIKTLRNLEMFSN-NIYDAGLASLSGLVNLQILKLDSTRITDTGIQHLSQMKELEILRLN 273
Query: 454 S 454
S
Sbjct: 274 S 274
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 122/253 (48%), Gaps = 3/253 (1%)
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+KLESL + C +T L +T+LK L +S + + D YL L L L+L
Sbjct: 25 LKLESLGLCRC-ALTSKSTSFLCKITSLKKLDLSENIINDECGFYLSMLTDLEELDLHDN 83
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLK 273
+ C S+L L L L + ++S + + S+ SLK LNL N I +HL
Sbjct: 84 SIEGKCFKEFSSLKKLKTLKLCQNRISQEEAMIYLSQTVSLKSLNLSQNNIGQSS-IHLS 142
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
LTNL+ L L+ C I GL + L LE + +S + +L+ L L+ L++
Sbjct: 143 NLTNLKELELNLCKITKGGLSFFSNLKKLEILKISQNSLGYDDFEELSHLVRLRILSIFG 202
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+ + ++ L +L++F I D+G A L NL+ L++ +TD G++H+
Sbjct: 203 CGLEKNSTNFIGNIKTLRNLEMFSNNIYDAGLASLSGLVNLQILKLDSTRITDTGIQHLS 262
Query: 394 DLSSLTLLNLSQN 406
+ L +L L+ N
Sbjct: 263 QMKELEILRLNSN 275
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 2/171 (1%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
++ L + L+SLN+ N I S + LS LTNLK L+++ K+T G+++ L+KL
Sbjct: 114 AMIYLSQTVSLKSLNLSQNN-IGQSSI-HLSNLTNLKELELNLCKITKGGLSFFSNLKKL 171
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+L + + + LS L L L++ C L + I +L+ L + N I D
Sbjct: 172 EILKISQNSLGYDDFEELSHLVRLRILSIFGCGLEKNSTNFIGNIKTLRNLEMFSNNIYD 231
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSL 317
L L GL NL+ L LDS I D G+ +L+ + LE + L+ + + +L
Sbjct: 232 AGLASLSGLVNLQILKLDSTRITDTGIQHLSQMKELEILRLNSNSLGNETL 282
>gi|421898414|ref|ZP_16328780.1| lrr-gala family type III effector protein (gala 2) [Ralstonia
solanacearum MolK2]
gi|206589620|emb|CAQ36581.1| lrr-gala family type III effector protein (gala 2) [Ralstonia
solanacearum MolK2]
Length = 1051
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 175/388 (45%), Gaps = 8/388 (2%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL L L+SLD + +I D ++ L ++LTSL+
Sbjct: 648 SVRHLDLSGCTGSAVSEAGLAVLARLP-LESLDLS-GTRIGDREVQALASSTSLTSLNLS 705
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L L++ G+ L L SL ++ I ++ +
Sbjct: 706 -GNRIGNAGARALGRNTVLTALNVSANPIGDAGVQALADSQSLTSLELRGIG-IGEAGIA 763
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ T L+SL IS + +++ A L Q L L C +T L+ + SL L
Sbjct: 764 ALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNGMAQQLARIRSLRTLE 823
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + D G ++ SL+ LNL N IT + L L+ L SL++ G GD G +
Sbjct: 824 VGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSGIGCGDRGAL 883
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+ L S+ L F GI + LA +L SL+L I AL + LT L+
Sbjct: 884 LLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTIDVDAAKALANTGCLTSLN 943
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ ++ D A+ L L SL++ L+ + + ++LT LN+S N D
Sbjct: 944 VSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAGNATLTSLNISHNHIGPDGAQ 1003
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLK 442
L + L L+ + I AG R L+
Sbjct: 1004 ALAESPS-LTFLDARANGIGEAGARALE 1030
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 154/351 (43%), Gaps = 28/351 (7%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + ++G L + L +L+ + I D G++ L
Sbjct: 685 IGDREVQALASS-TSLTSLNLSGNRIGNAGARALGRNTVLTALNVS-ANPIGDAGVQALA 742
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+LTSL R I G+ A A L LD+ L L SL
Sbjct: 743 DSQSLTSLELR-GIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKAN 801
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C +T+ + L+ + +L++L++ + + D+G+ + L LNL P+T L
Sbjct: 802 ACG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRP 860
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI---------TDECLVHL-- 272
L +L L+++ D G SK +L L LGFN I + L+ L
Sbjct: 861 LELSRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDL 920
Query: 273 ----------KGLTN---LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
K L N L SLN+ C + DE L L S+++S +S + R
Sbjct: 921 RGNTIDVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARA 980
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
LAG ++L SLN+ I G AL LT LD I ++GA L N
Sbjct: 981 LAGNATLTSLNISHNHIGPDGAQALAESPSLTFLDARANGIGEAGARALEN 1031
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 8/226 (3%)
Query: 229 SLFYLNLNRC---QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
S+ +L+L+ C +S+ G +++ L+ L+L I D + L T+L SLNL
Sbjct: 648 SVRHLDLSGCTGSAVSEAGLAVLARL-PLESLDLSGTRIGDREVQALASSTSLTSLNLSG 706
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
IG+ G L T L ++N+S I D ++ LA SL SL L I + G+AAL
Sbjct: 707 NRIGNAGARALGRNTVLTALNVSANPIGDAGVQALADSQSLTSLELRGIGIGEAGIAALA 766
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
S T L LD+ +++ AA L + L SL+ GLT+ + + + SL L +
Sbjct: 767 SNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNGMAQQLARIRSLRTLEVGS 826
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
N ++ D + I+ L +LN+S++ IT GLR PL+ R+LT
Sbjct: 827 N-SIGDTGVLAIARNASLRTLNLSHNPITLQGLR---PLELSRTLT 868
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 101/252 (40%), Gaps = 25/252 (9%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALG--SLFYLNLNR 237
NL SLQ+ + + LK L L L+L C A ++++ L L LN+
Sbjct: 107 NLTSLQLEGNFT----LQDLKALPATLRHLDLSACTGGAKSFEAIAYLAGLPLESLNVAG 162
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ DDG + SL+ LN I L L SL+L GIGDEG L
Sbjct: 163 ADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVLASLDLTRNGIGDEGARALA 222
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD------------------ARQITDT 339
G +L S+ + ++D R LAG +L +L+L A +IT
Sbjct: 223 GSRSLTSLAVLNCLVTDVGARALAGNGTLTALDLGNLITETGNELEQAGYDRTANEITAR 282
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
G AL LT L + G D G L + L SL + +T A + LT
Sbjct: 283 GAWALAQNRSLTSLSIQGNLCGDGGVQALARNRTLTSLNVAYTDMTPASATELARNPVLT 342
Query: 400 LLNLSQNCNLTD 411
L++ N L D
Sbjct: 343 SLSVRWNYGLGD 354
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 352 HLDL---FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
HLDL G+ ++++G A L L SL++ G + D V+ + +SLT LNLS N
Sbjct: 651 HLDLSGCTGSAVSEAGLAVLARLP-LESLDLSGTRIGDREVQALASSTSLTSLNLSGN-R 708
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ + + T L +LNVS + I AG++ L ++L SL L + I L S
Sbjct: 709 IGNAGARALGRNTVLTALNVSANPIGDAGVQALADSQSLTSLELRGIGIGEAGIAALAS 767
>gi|406831706|ref|ZP_11091300.1| peptidase M56 BlaR1 [Schlesneria paludicola DSM 18645]
Length = 1125
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 169/380 (44%), Gaps = 31/380 (8%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
GL+ G + LS +R++ I + G+++ A K L+ G + ++
Sbjct: 697 GLKFTEGRRKIQVLSLKRSDHIQSVGLRSGAAA---SKHPLDEANTRDGDIAAAIDRLRK 753
Query: 158 ESLNIK----------WCNCITD-SDMKPLSG---------LTNLKSLQISCSKV--TDS 195
+ + ++ W I D S P+SG ++ +SL + V T +
Sbjct: 754 QEIFVREFNSRNDPRYWIQVIVDLSRTIPISGDEILVDIETISRDRSLDLHLKNVDLTPA 813
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
+A L + ++ L L G + L ++S L + L L +DDG ++ + +L+
Sbjct: 814 SVARLGATKHISTLELSGRSINDELLQAISNL-PIGRLELGSGPYTDDGVKQLANCVALE 872
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
+++ IT++C HL L L + L S L L + +L + +S T +
Sbjct: 873 SISIAGPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVLATLARIPDLRRMTISTT---EQ 929
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNL 374
L S L+S++ D AL L + + IT++G A L ++L
Sbjct: 930 LTFDLGPFSELRSVDFTGATFGDDLTHALAEKCPRLEEASIRNSSITNAGVAALVPLRHL 989
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
R L + + D I+ + +L L+L+ NC++ D+TL SG + L LN+ ++I+
Sbjct: 990 RVLALDRAQIDDRIADSIQKMPNLEWLDLN-NCDIGDRTLAAASGCSRLSYLNLGQTQIS 1048
Query: 435 SAGLRHLKPLKNLRSLTLES 454
+ GL + LKN+R+L+L S
Sbjct: 1049 NEGLAVIGKLKNIRNLSLWS 1068
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 165/362 (45%), Gaps = 41/362 (11%)
Query: 34 QDLCLGQYPGVNDK--WMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
Q++ + ++ ND W+ VI + + +SG ++ L+ ++ S +SLD +
Sbjct: 754 QEIFVREFNSRNDPRYWIQVIVDLSRT---IPISGDEI----LVDIETISRDRSLDLHLK 806
Query: 92 -IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
+ ++ + L ++++L +I + ++A + L + +L+L G+
Sbjct: 807 NVDLTPASVARLGATKHISTLELS-GRSINDELLQAISNL-PIGRLELGSGPYTDDGVKQ 864
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLT 207
L + LES++I IT+ L L L+ + + S+ T + +A + L+++T
Sbjct: 865 LANCVALESISIA-GPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVLATLARIPDLRRMT 923
Query: 208 LLNLEGCPVTAACLDSLSAL---GSLFYLNL-----NRCQ-----------LSDDGCEKF 248
+ E L ++ G+ F +L +C +++ G
Sbjct: 924 ISTTEQLTFDLGPFSELRSVDFTGATFGDDLTHALAEKCPRLEEASIRNSSITNAGVAAL 983
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
+ L+VL L +I D ++ + NLE L+L++C IGD L +G + L +NL
Sbjct: 984 VPLRHLRVLALDRAQIDDRIADSIQKMPNLEWLDLNNCDIGDRTLAAASGCSRLSYLNLG 1043
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG-----LTHLDLFGARITD 362
T IS+ L + L ++++L+L + +Q+TD ++ L L + HL L G +IT
Sbjct: 1044 QTQISNEGLAVIGKLKNIRNLSLWSNQQLTDECVSHLKQLPDYRMKFVLHLQLDGTQITK 1103
Query: 363 SG 364
+G
Sbjct: 1104 NG 1105
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 3/229 (1%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
TD +K L+ L+S+ I+ +T+ +L L +L + L T+ L +L+ +
Sbjct: 858 TDDGVKQLANCVALESISIAGPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVLATLARIP 917
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L + ++ + FS++ S+ F + L + LE ++ + I
Sbjct: 918 DLRRMTISTTEQLTFDLGPFSELRSVDFTGATFGDDLTHALA--EKCPRLEEASIRNSSI 975
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
+ G+ L L +L + L I D + + +L+ L+L+ I D LAA + +
Sbjct: 976 TNAGVAALVPLRHLRVLALDRAQIDDRIADSIQKMPNLEWLDLNNCDIGDRTLAAASGCS 1035
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLS 396
L++L+L +I++ G A + KN+R+L + LTD V H+K L
Sbjct: 1036 RLSYLNLGQTQISNEGLAVIGKLKNIRNLSLWSNQQLTDECVSHLKQLP 1084
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE--SLNLDSCGIGD 290
L+L L+ + + L L I DE L + ++NL L L S D
Sbjct: 803 LHLKNVDLTPASVARLGATKHISTLELSGRSINDELL---QAISNLPIGRLELGSGPYTD 859
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+G+ L LESI+++ I++ L L L+ + L + Q T LA L + L
Sbjct: 860 DGVKQLANCVALESISIAGPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVLATLARIPDL 919
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
+ + T+ L F LRS++ G D DL+ L++ C
Sbjct: 920 RRMTI---STTEQLTFDLGPFSELRSVDFTGATFGD-------DLTH----ALAEKCPRL 965
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 470
++ ++ NS IT+AG+ L PL++LR L L+ ++ +Q +
Sbjct: 966 EEA-------------SIRNSSITNAGVAALVPLRHLRVLALDRAQIDDRIADSIQK--M 1010
Query: 471 PNL 473
PNL
Sbjct: 1011 PNL 1013
>gi|406831321|ref|ZP_11090915.1| hypothetical protein SpalD1_06780 [Schlesneria paludicola DSM
18645]
Length = 785
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 145/281 (51%), Gaps = 21/281 (7%)
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF---NE 263
T L+ +G +++ + L+ L LNL ++SD G +++ +L ++ L ++
Sbjct: 506 TALSADGT-ISSEIVSQLALLKGRLILNLEGARISDAGT---AQLRALPIVGLNLELCSQ 561
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF-TGISD------GS 316
+TD L GL L +L L + GL + L ++ L I+D GS
Sbjct: 562 LTDATFSSLSGLKQLVALVLSGTNVTSTGLTQVAENLPLVALELELCDAINDDVCLTLGS 621
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+++L L+ LK + R I+D GL L +LT L L+L+G ++TD+G +L++ K LR
Sbjct: 622 MKRLRWLN-LKKSGFEKRGISDIGLEQLKTLTELEMLNLYGNKVTDAGLIHLQSLKRLRD 680
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLS-----QNCNLTDKTLELISGLTGLVSLNVSNS 431
L++ L DAG++ + L SL LNL +LTD+ ++ L L LN++ S
Sbjct: 681 LDLSLLNLNDAGIESLSPLISLERLNLMFTEGFAGPSLTDRATRSLTPLQQLTWLNLNGS 740
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
++T +GL L+ L LR+L + KVT + ++ + R LP
Sbjct: 741 KLTDSGLEQLQELNQLRTLHVVRTKVTESGREKFR-RALPE 780
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 123/267 (46%), Gaps = 27/267 (10%)
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
L ++L G+ ++D+G L+ + L+ C Q++D L GL L +L N +
Sbjct: 529 LILNLEGARISDAGTAQLRALP-IVGLNLELCSQLTDATFSSLSGLKQLVALVLSGTN-V 586
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T+ G+ A + LV L+LE C I+ + C+T MK L L
Sbjct: 587 TSTGLTQVAENLPLVALELELCDAINDDV------------------CLTLGSMKRLRWL 628
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NLK ++D G+ LK L +L +LNL G VT A L L +L L L+L+
Sbjct: 629 -NLKKSGFEKRGISDIGLEQLKTLTELEMLNLYGNKVTDAGLIHLQSLKRLRDLDLSLLN 687
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNE------ITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L+D G E S + SL+ LNL F E +TD L L L LNL+ + D GL
Sbjct: 688 LNDAGIESLSPLISLERLNLMFTEGFAGPSLTDRATRSLTPLQQLTWLNLNGSKLTDSGL 747
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKL 320
L L L ++++ T +++ K
Sbjct: 748 EQLQELNQLRTLHVVRTKVTESGREKF 774
>gi|290984930|ref|XP_002675179.1| predicted protein [Naegleria gruberi]
gi|284088774|gb|EFC42435.1| predicted protein [Naegleria gruberi]
Length = 330
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 143/315 (45%), Gaps = 32/315 (10%)
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
SDG + + +LT L R NN I +G ++ ++ L +L C I G + KG
Sbjct: 43 SDGNFQVFEMMKHLTHLDIR-NNGIGYEGAQSIGKVMQLTRL----C--IAGNNIGEKG- 94
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K +S LT L +L +S +++ D G ++ L +LT LN+ G
Sbjct: 95 ------------------AKSISQLTQLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGN 136
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI---TDECLVH 271
+T LS L L +LN++ + +G + + + L L++ +N I + +
Sbjct: 137 RITDKGAIFLSDLKELRFLNISSNTILLEGIKSLTNLKQLTQLDISYNNILPSYAQTISE 196
Query: 272 LKGLTNLESLNLDSCGIGDE--GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+ LTNL +L+ + G G + G+ + + NL+++ I + + L L
Sbjct: 197 MDQLTNL-NLSYNDYGWGSDSNGVRYICEMKNLKTLTFGGICIRQYIFNYIKEMKQLACL 255
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
N+ + I + ++S+ LT LD+ I D GA ++ L SL + G + G
Sbjct: 256 NIRSSYIGSSSAKLISSMNQLTELDISYNEIGDVGAKHISEMDQLTSLNVEGCRINSEGT 315
Query: 390 KHIKDLSSLTLLNLS 404
+++K + LT LN+S
Sbjct: 316 EYLKQMKQLTYLNIS 330
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 135/298 (45%), Gaps = 21/298 (7%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+D + + + +L L I + + G + + +LT L + G + S+S L
Sbjct: 43 SDGNFQVFEMMKHLTHLDIRNNGIGYEGAQSIGKVMQLTRLCIAGNNIGEKGAKSISQLT 102
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L+++ QL D G + S++ L LN+ N ITD+ + L L L LN+ S I
Sbjct: 103 QLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGNRITDKGAIFLSDLKELRFLNISSNTI 162
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
EG+ +LT L L +++S+ I + ++ + L +LNL
Sbjct: 163 LLEGIKSLTNLKQLTQLDISYNNILPSYAQTISEMDQLTNLNLSYND------------- 209
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
+G +G Y+ KNL++L G + +IK++ L LN+ ++
Sbjct: 210 -------YGWGSDSNGVRYICEMKNLKTLTFGGICIRQYIFNYIKEMKQLACLNI-RSSY 261
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+ + +LIS + L L++S + I G +H+ + L SL +E C++ + + L+
Sbjct: 262 IGSSSAKLISSMNQLTELDISYNEIGDVGAKHISEMDQLTSLNVEGCRINSEGTEYLK 319
>gi|351713942|gb|EHB16861.1| F-box/LRR-repeat protein 14 [Heterocephalus glaber]
Length = 399
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 108/338 (31%), Positives = 169/338 (50%), Gaps = 48/338 (14%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ +ESLN+ C +TD+ + + + +L++L +S C ++TDS + YLKGL
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG 260
+ +L L GC L L L LNL C+ LSD G IG L +
Sbjct: 146 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVG------IGHLAGMTRS 196
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-----GLTNLESINLSFTG-ISD 314
E G LE L L C + L +L+ G +NLSF G ISD
Sbjct: 197 AAE----------GCLGLEQLTLQDC----QKLTDLSQHISRGRWRGRLLNLSFCGGISD 242
Query: 315 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 369
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 243 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 301
Query: 370 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 427
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 302 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 361
Query: 428 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+ +RIT GL + L L+ L L ++T ++ R
Sbjct: 362 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 399
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 171/334 (51%), Gaps = 47/334 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QL 240
L + C K+TD +G + LLNL C ++ A L LS +GSL LNL C +
Sbjct: 206 QLTLQDCQKLTDLSQHISRGRWRGRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNI 265
Query: 241 SDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNL 296
SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 266 SDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM 324
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
+R++ G L++LN+ +ITD GL + L+ LT +D
Sbjct: 325 --------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGID 361
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L+G RIT G + L+ L + +TD+
Sbjct: 362 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 395
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 162/330 (49%), Gaps = 39/330 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 P----VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL--------KVLNLGF- 261
V L ++ + L L + L D C+K + + ++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQD--CQKLTDLSQHISRGRWRGRLLNLSFC 237
Query: 262 NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFT-GISDGSLR 318
I+D L+HL + +L SLNL SC I D G+++L G L +++SF + D SL
Sbjct: 238 GGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLA 297
Query: 319 KLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNL 374
+A GL LKSL+L + I+D G+ + + GL L++ RITD G + + L
Sbjct: 298 YIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQL 357
Query: 375 RSLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
+++ G +T G++ I L L +LNL
Sbjct: 358 TGIDLYGCTRITKRGLERITQLPCLKVLNL 387
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 123/262 (46%), Gaps = 43/262 (16%)
Query: 224 LSALGSLFYLNLNRC-QLSDDGCEK--FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
+ + ++ LNL+ C L+D+G +IGSL+ LNL +ITD L + + L L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQIT 337
E L L C N++ TG+ L GL LKSLNL + R ++
Sbjct: 146 EVLELGGCS------------------NITNTGL----LLIAWGLQRLKSLNLRSCRHLS 183
Query: 338 DTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYLRNFKNLR--SLEICGGGLTD 386
D G+ L +T GL L L ++TD R R +L CGG ++D
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSQHISRGRWRGRLLNLSFCGG-ISD 242
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KP 443
AG+ H+ + SL LNL N++D + L G L L+VS ++ L ++ +
Sbjct: 243 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQG 302
Query: 444 LKNLRSLTLESCKVTANDIKRL 465
L L+SL+L SC ++ + I R+
Sbjct: 303 LDGLKSLSLCSCHISDDGINRM 324
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 51/202 (25%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
++D+GL+HL +L+SL+ C ISD G+ HL
Sbjct: 240 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL------------------------AM 275
Query: 129 GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++L
Sbjct: 276 GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLN 335
Query: 187 I-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
I C ++TD G+ + + L +LT ++L GC +++ G
Sbjct: 336 IGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRG 372
Query: 245 CEKFSKIGSLKVLNLGFNEITD 266
E+ +++ LKVLNLG ++TD
Sbjct: 373 LERITQLPCLKVLNLGLWQMTD 394
>gi|320163290|gb|EFW40189.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 830
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 161/374 (43%), Gaps = 54/374 (14%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L F I G +L L +L+ +S + IT+ AFAGL+ L +L+L R
Sbjct: 19 LYFTDITSIPAGTFANLTALESLSLVSGQ----ITSVSPNAFAGLVALTELNLRR----- 69
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
N ++ +GLT L+ L + +++T L
Sbjct: 70 --------------------NPLSAVPTSAFTGLTALQRLNLDHNEITTLSANAFPHLPA 109
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT L+L +T ++ + LG+L L+L QL+ F+ +G+L L L N+I
Sbjct: 110 LTSLSLTDNQLTTIPENAFAGLGALTNLDLTENQLTTIPENAFAGLGALTNLQLPSNKIV 169
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
+ GL L +L +++ + L GL LE ++L + I+ S AGL S
Sbjct: 170 SMAAISFTGLAGLTTLIMNNNLVTTIPENALPGLAALEVLDLRYNSITSVSGNAFAGLLS 229
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L+SL++ A + GLT L LF N L +L + LT
Sbjct: 230 LRSLDISAN-----------AFAGLTALTLF-------------NLTALHTLTLENNLLT 265
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
LS+LT L+L+ N LT + SGL+ L SL ++N+ T+ L
Sbjct: 266 SISANAFSGLSALTWLHLAYN-RLTSISANAFSGLSALSSLYLNNNPCTAIAAEAFNGLT 324
Query: 446 NLRSLTLESCKVTA 459
+L+SLTL + ++T+
Sbjct: 325 SLKSLTLVANQLTS 338
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 109/411 (26%), Positives = 175/411 (42%), Gaps = 13/411 (3%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
DL +D+T + + L+SL QI+ GL LT L+ RRN ++A
Sbjct: 18 DLYFTDITSIPAGTFANLTALESLSL-VSGQITSVSPNAFAGLVALTELNLRRN-PLSAV 75
Query: 123 GMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
AF GL L +L+L E T +L L L SL I ++ L L
Sbjct: 76 PTSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSL-SLTDNQLTTIPENAFAGLGAL 134
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
TNL + + + ++ A GL LT L L + + S + L L L +N
Sbjct: 135 TNLDLTENQLTTIPENAFA---GLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNNNL 191
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
++ + +L+VL+L +N IT GL +L SL++ + + L L
Sbjct: 192 VTTIPENALPGLAALEVLDLRYNSITSVSGNAFAGLLSLRSLDISANAFAGLTALTLFNL 251
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
T L ++ L ++ S +GLS+L L+L ++T A + L+ L+ L L
Sbjct: 252 TALHTLTLENNLLTSISANAFSGLSALTWLHLAYNRLTSISANAFSGLSALSSLYLNNNP 311
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
T A +L+SL + LT L++LT L L QN + + + +G
Sbjct: 312 CTAIAAEAFNGLTSLKSLTLVANQLTSISANAFVGLNALTYLYL-QNNRIVSFSADAFTG 370
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT---ANDIKRLQS 467
L L+ L++ ++ ITS L L L L++ ++T AN L +
Sbjct: 371 LPVLIYLDIYSNPITSIPSNAFTGLTKLVFLRLDTNQITSISANAFTELSA 421
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 125/310 (40%), Gaps = 12/310 (3%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLES 159
GL+ LT+L NN +T A GL L LDL T + G GL+ L S
Sbjct: 176 FTGLAGLTTL-IMNNNLVTTIPENALPGLAALEVLDLRYNSITSVSGNA--FAGLLSLRS 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG---CPV 216
L+I N L LT L +L + + +T GL LT L+L +
Sbjct: 233 LDIS-ANAFAGLTALTLFNLTALHTLTLENNLLTSISANAFSGLSALTWLHLAYNRLTSI 291
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+A LSAL SL YLN N C + E F+ + SLK L L N++T GL
Sbjct: 292 SANAFSGLSALSSL-YLNNNPC--TAIAAEAFNGLTSLKSLTLVANQLTSISANAFVGLN 348
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L L L + I TGL L +++ I+ GL+ L L LD QI
Sbjct: 349 ALTYLYLQNNRIVSFSADAFTGLPVLIYLDIYSNPITSIPSNAFTGLTKLVFLRLDTNQI 408
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
T A T L+ L L L RIT A L +L + LT K L
Sbjct: 409 TSISANAFTELSALRGLWLHSNRITTLSANAFIGLTALTNLPLNDNPLTTTPPGLFKGLP 468
Query: 397 SLTLLNLSQN 406
+ L+ S N
Sbjct: 469 NSLFLSYSSN 478
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 129/310 (41%), Gaps = 37/310 (11%)
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
TN + + +T L L L+L +T+ ++ + L +L LNL R
Sbjct: 12 TNTTQFDLYFTDITSIPAGTFANLTALESLSLVSGQITSVSPNAFAGLVALTELNLRRNP 71
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
LS F+ + +L+ LNL NEIT HL LT+L + I + L
Sbjct: 72 LSAVPTSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSLSLTDNQLTTIPENAFAGL 131
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD------TGLAALT----- 345
LTNL+ T I + AGL +L +L L + +I TGLA LT
Sbjct: 132 GALTNLDLTENQLTTIPE---NAFAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMN 188
Query: 346 ----------SLTGLTHLDLFGAR---ITDSGAAYLRNFKNLRSLEICG---GGLTDAGV 389
+L GL L++ R IT +LRSL+I GLT +
Sbjct: 189 NNLVTTIPENALPGLAALEVLDLRYNSITSVSGNAFAGLLSLRSLDISANAFAGLTALTL 248
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
++ L +LTL +N LT + SGL+ L L+++ +R+TS L L S
Sbjct: 249 FNLTALHTLTL----ENNLLTSISANAFSGLSALTWLHLAYNRLTSISANAFSGLSALSS 304
Query: 450 LTLESCKVTA 459
L L + TA
Sbjct: 305 LYLNNNPCTA 314
>gi|290997880|ref|XP_002681509.1| predicted protein [Naegleria gruberi]
gi|284095133|gb|EFC48765.1| predicted protein [Naegleria gruberi]
Length = 226
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 110/219 (50%), Gaps = 1/219 (0%)
Query: 160 LNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+N+ + DSD +K +S + L +L + +++ D G + +++L L + + A
Sbjct: 5 VNVNVSENLLDSDNVKFISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGA 64
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ L L L L++NR ++ D+G + SK+ L +L++G N+I + + ++ + L
Sbjct: 65 KGVKYLCKLKQLIALDINRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQL 124
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L + GIGDEG ++G+ L +++ I D + ++ + L L++ +I D
Sbjct: 125 TCLYIYGNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYNRIGD 184
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
G ++ + LT LD+ RI D G + K L+ L
Sbjct: 185 EGAKYISEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRL 223
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 1/220 (0%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+N++ L D + S++ L L + N I DE + + L SL + IG +G
Sbjct: 7 VNVSENLLDSDNVKFISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGAKG 66
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ L L L +++++ I D + ++ + L L++ QI G+ ++ + LT
Sbjct: 67 VKYLCKLKQLIALDINRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTC 126
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L ++G I D GA + K L L I + D G K I ++ LT L++ N + D+
Sbjct: 127 LYIYGNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYN-RIGDE 185
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ IS + L L++ ++RI G + + +K L+ L L
Sbjct: 186 GAKYISEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRLCL 225
>gi|384251251|gb|EIE24729.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 498
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 178/381 (46%), Gaps = 49/381 (12%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL----MKLES 159
GL++L L F +++ITA ++ L L L LE R L+ L L + L+
Sbjct: 30 GLTHL-HLCFHAHHSITAHTLQPLQQLRRLQTLVLENKARAQPTLMGLGHLGSQQIALDQ 88
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY---LKGLQKLTLLNLEGCP- 215
L++K DS + +S L +L V G + L GL++L LL +GC
Sbjct: 89 LHVKAFVVGLDSGIDSMSALRSLHLSNCILMMVRAKGQGFPVMLTGLRQLELLACKGCSG 148
Query: 216 VTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKIGSLKVLNLGFNEI----TDECLV 270
+++ + +L SL LN ++SDD C + + ++ L L + + T C+
Sbjct: 149 LSSRPFAGIESLVSLKTCLLNCSLRMSDDTCADIASLRQVQTLGLACSALEGCLTPACIT 208
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLA-GLSSLKS 328
H GL +L G+T L +++LS ISD S+ ++A L+ L
Sbjct: 209 H-------------------AGLRSLCGMTQLTALDLSGHAAISDASMAEIARHLTRLID 249
Query: 329 LNLD--------ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI- 379
L+L A +TD G+AAL SLT L + L A++ +G A L + LR LE+
Sbjct: 250 LDLRRPACDNPGAAVVTDAGIAALASLTLLESVRLSQAQVGQAGCAALASLPRLRCLELS 309
Query: 380 -CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVS--NSRITS 435
C L+D V + L L+ L+L+ ++TD + L+ G+ L+ L++S + +
Sbjct: 310 YC-DSLSDTPVCELTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSACHMHVGD 368
Query: 436 AGLRHLKPLKNLRSLTLESCK 456
L + L NL+ L L SC+
Sbjct: 369 ISLYAIATLPNLQVLRLHSCE 389
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 132/275 (48%), Gaps = 19/275 (6%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN----- 117
L+ + +T +GL L + L +LD + ISD + + R L+ L L RR
Sbjct: 202 LTPACITHAGLRSLCGMTQLTALDLSGHAAISDASMAEIARHLTRLIDLDLRRPACDNPG 261
Query: 118 --AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T G+ A A L L + L + G L L +L L + +C+ ++D+ +
Sbjct: 262 AAVVTDAGIAALASLTLLESVRLSQAQVGQAGCAALASLPRLRCLELSYCDSLSDTPVCE 321
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAA--CLDSLSALGSLF 231
L+ L +L L ++ C+ VTD + A ++G+ +L L+L C + L +++ L +L
Sbjct: 322 LTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSACHMHVGDISLYAIATLPNLQ 381
Query: 232 YLNLNRCQLSDD----GCEKFSKIGSLKVLNL-GFNEITDECLVHL-KGLTNLESLNLDS 285
L L+ C+ D G + +L L++ G I+D + + L L+ L+L+
Sbjct: 382 VLRLHSCERVSDMGIGGLCSGAAAAALTHLDVRGCERISDAGATSIGRCLKQLQYLSLEH 441
Query: 286 CG-IGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
C IGD G+ L+GL +LE + + TG + S +
Sbjct: 442 CHLIGDRGIRTLSGLPHLEILRVGGTGATTDSFAQ 476
>gi|343416403|emb|CCD20380.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
Length = 1256
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 137/493 (27%), Positives = 221/493 (44%), Gaps = 64/493 (12%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+LCL Q V+D ++ D+ + LS++ S + +TD S L ++ +L+ LD N
Sbjct: 656 TLQELCLRQL-SVDDAFLRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEILDLN 710
Query: 90 FCIQISDGGLEHLRGLSNLTSL-------------------SFRR---NNAITAQGMKAF 127
C I G L L GL+ L L RR N+ +
Sbjct: 711 GCTGIVRG-LHVLCGLTTLQELCLANVNVDDAFVRDLTCHERLRRLSLNSCTRITDVSPL 769
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L L+L CT I GL L GL L+ L + + D+ ++ L+ L+ L +
Sbjct: 770 ARMRSLEMLNLNDCTGIVRGLHELCGLTTLQELYLPKVY-VDDAFLRDLTCHERLRRLSL 828
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
SC+++TD ++ L ++ L +LNL GC L L L +L L L + + D
Sbjct: 829 NSCTRITD--VSPLARMRSLEMLNLNGCTGIVRGLHELCGLTTLQELYLRQMSVDDAFLR 886
Query: 247 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
+ L+ L+L ITD + L + +LE L+L+ C GL L GLT L+ +
Sbjct: 887 DLTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLDLNDCTGIVRGLHELCGLTTLQEL 944
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSG 364
L+ + D LR L L+ L+L++ +ITD ++ L + L LDL G G
Sbjct: 945 CLANVNVDDAFLRDLTCHERLRELSLNSCTRITD--VSPLARMRSLEKLDLNGCTGIVRG 1002
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVK-----------------HIKDLSSLTLLNLSQNC 407
L L+ L + + DA ++ I D+S L + +N
Sbjct: 1003 LHVLCGLTTLQELYLRQMSVDDALLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLENM 1062
Query: 408 NLTDKT-----LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT-AN 460
+L T L ++ GLT L L + + A LR L + LR L+L SC ++T +
Sbjct: 1063 DLNGCTGIVRGLHVLCGLTTLQELYLRQMSVDDAFLRDLTCHERLRKLSLNSCTRITDVS 1122
Query: 461 DIKRLQSRDLPNL 473
+ R++S ++ +L
Sbjct: 1123 PLARMRSLEMLDL 1135
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 191/410 (46%), Gaps = 38/410 (9%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+ + D L L L LS N+ + A + +L LDL CT I GL L
Sbjct: 381 VSVDDAFLRDLTCHERLRELSL--NSCTRITDVSPLARMRSLEMLDLNGCTGIVRGLHEL 438
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLN 210
GL L+ L ++ + + D+ ++ L+ L+ L + SC+++TD ++ L ++ L +L+
Sbjct: 439 CGLTTLQELYLRQMS-VDDALLRDLTCHERLRELSLNSCTRITD--VSPLARMRSLEMLD 495
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECL 269
L GC L L L +L L L + + D + L+ L+L ITD +
Sbjct: 496 LNGCTGIVRGLHELCGLTTLQELYLRQMSVDDALLRDLTCHERLRELSLNSCTRITD--V 553
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L + +LE LNL+ C GL L GLT L+ + L+ + D LR L L+ L
Sbjct: 554 SPLARMRSLEILNLNDCTGIVRGLHVLCGLTTLQKLCLANVNVDDAFLRDLTCHERLREL 613
Query: 330 NLDA-RQITD------------------TGLA-ALTSLTGLTHLDLFGARITDSGAAYLR 369
+L++ +ITD TG+ L L GLT L R A+LR
Sbjct: 614 SLNSCTRITDVSPLARMRSLENLDLNDCTGIVRGLHVLCGLTTLQELCLRQLSVDDAFLR 673
Query: 370 NF---KNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
+ + LR L + +TD V + + SL +L+L+ C + L ++ GLT L
Sbjct: 674 DLTCHERLRRLSLNSCTRITD--VSPLARMRSLEILDLN-GCTGIVRGLHVLCGLTTLQE 730
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT-ANDIKRLQSRDLPNL 473
L ++N + A +R L + LR L+L SC ++T + + R++S ++ NL
Sbjct: 731 LCLANVNVDDAFVRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEMLNL 780
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 138/492 (28%), Positives = 212/492 (43%), Gaps = 64/492 (13%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ LCL V+D ++ D+ + LS++ S + +TD S L ++ +L++LD N
Sbjct: 585 TLQKLCLANV-NVDDAFLRDLTCHERLRELSLN-SCTRITDVSPLARMR---SLENLDLN 639
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRR----------------------NNAITAQGMKAF 127
C I G L L GL+ L L R+ N+ +
Sbjct: 640 DCTGIVRG-LHVLCGLTTLQELCLRQLSVDDAFLRDLTCHERLRRLSLNSCTRITDVSPL 698
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L LDL CT I GL L GL L+ L + N + D+ ++ L+ L+ L +
Sbjct: 699 ARMRSLEILDLNGCTGIVRGLHVLCGLTTLQELCLANVN-VDDAFVRDLTCHERLRRLSL 757
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
SC+++TD ++ L ++ L +LNL C L L L +L L L + + D
Sbjct: 758 NSCTRITD--VSPLARMRSLEMLNLNDCTGIVRGLHELCGLTTLQELYLPKVYVDDAFLR 815
Query: 247 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
+ L+ L+L ITD + L + +LE LNL+ C GL L GLT L+ +
Sbjct: 816 DLTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLNLNGCTGIVRGLHELCGLTTLQEL 873
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDT----------------------GLA 342
L + D LR L L+ L+L++ +ITD GL
Sbjct: 874 YLRQMSVDDAFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEMLDLNDCTGIVRGLH 933
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLL 401
L LT L L L + D+ L + LR L + +TD V + + SL L
Sbjct: 934 ELCGLTTLQELCLANVNVDDAFLRDLTCHERLRELSLNSCTRITD--VSPLARMRSLEKL 991
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+L+ C + L ++ GLT L L + + A LR L + LR L+L SC +
Sbjct: 992 DLN-GCTGIVRGLHVLCGLTTLQELYLRQMSVDDALLRDLTCHERLRRLSLNSCTRITDV 1050
Query: 462 IKRLQSRDLPNL 473
+ R L N+
Sbjct: 1051 SPLARMRSLENM 1062
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 187/405 (46%), Gaps = 21/405 (5%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRR 115
++L + L+ +V D+ L L L+ L N C +I+D L +R L NL
Sbjct: 584 TTLQKLCLANVNVDDAFLRDLTCHERLRELSLNSCTRITDVSPLARMRSLENLDL----- 638
Query: 116 NNAIT--AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N T +G+ GL L +L L + + L +L +L L++ C IT D+
Sbjct: 639 -NDCTGIVRGLHVLCGLTTLQELCLRQLSVDDAFLRDLTCHERLRRLSLNSCTRIT--DV 695
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
PL+ + +L+ L ++ C+ + G+ L GL L L L V A + L+ L
Sbjct: 696 SPLARMRSLEILDLNGCTGIV-RGLHVLCGLTTLQELCLANVNVDDAFVRDLTCHERLRR 754
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+LN C D +++ SL++LNL L L GLT L+ L L + D
Sbjct: 755 LSLNSCTRITD-VSPLARMRSLEMLNLNDCTGIVRGLHELCGLTTLQELYLPKVYVDDAF 813
Query: 293 LVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
L +LT L ++L S T I+D S LA + SL+ LNL+ GL L LT L
Sbjct: 814 LRDLTCHERLRRLSLNSCTRITDVS--PLARMRSLEMLNLNGCTGIVRGLHELCGLTTLQ 871
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L L + D+ L + LR L + +TD V + + SL +L+L+ +C
Sbjct: 872 ELYLRQMSVDDAFLRDLTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLDLN-DCTGI 928
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+ L + GLT L L ++N + A LR L + LR L+L SC
Sbjct: 929 VRGLHELCGLTTLQELCLANVNVDDAFLRDLTCHERLRELSLNSC 973
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 137/494 (27%), Positives = 223/494 (45%), Gaps = 66/494 (13%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+LCL V+D ++ D+ + LS++ S + +TD S L ++ +L+ L+ N
Sbjct: 727 TLQELCLANV-NVDDAFVRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEMLNLN 781
Query: 90 FCIQISDGGLEHLRGLSNLTSL-------------------SFRR---NNAITAQGMKAF 127
C I G L L GL+ L L RR N+ +
Sbjct: 782 DCTGIVRG-LHELCGLTTLQELYLPKVYVDDAFLRDLTCHERLRRLSLNSCTRITDVSPL 840
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L L+L CT I GL L GL L+ L ++ + + D+ ++ L+ L+ L +
Sbjct: 841 ARMRSLEMLNLNGCTGIVRGLHELCGLTTLQELYLRQMS-VDDAFLRDLTCHERLRRLSL 899
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
SC+++TD ++ L ++ L +L+L C L L L +L L L + D
Sbjct: 900 NSCTRITD--VSPLARMRSLEMLDLNDCTGIVRGLHELCGLTTLQELCLANVNVDDAFLR 957
Query: 247 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
+ L+ L+L ITD + L + +LE L+L+ C GL L GLT L+ +
Sbjct: 958 DLTCHERLRELSLNSCTRITD--VSPLARMRSLEKLDLNGCTGIVRGLHVLCGLTTLQEL 1015
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITD------------------TGLA-ALT 345
L + D LR L L+ L+L++ +ITD TG+ L
Sbjct: 1016 YLRQMSVDDALLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLENMDLNGCTGIVRGLH 1075
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNF---KNLRSLEI-CGGGLTDAGVKHIKDLSSLTLL 401
L GLT L R A+LR+ + LR L + +TD V + + SL +L
Sbjct: 1076 VLCGLTTLQELYLRQMSVDDAFLRDLTCHERLRKLSLNSCTRITD--VSPLARMRSLEML 1133
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT-A 459
+L+ C + L ++ GLT L L + + A LR L + LR L+L SC ++T
Sbjct: 1134 DLN-GCTGIVRGLHVLCGLTTLQELYLRQMCVDDAFLRDLTCHERLRRLSLNSCTRITDV 1192
Query: 460 NDIKRLQSRDLPNL 473
+ + R++S ++ +L
Sbjct: 1193 SPLARMRSLEMLDL 1206
>gi|428212495|ref|YP_007085639.1| hypothetical protein Oscil6304_2053 [Oscillatoria acuminata PCC
6304]
gi|428000876|gb|AFY81719.1| leucine-rich repeat (LRR) protein [Oscillatoria acuminata PCC 6304]
Length = 455
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 147/321 (45%), Gaps = 62/321 (19%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D+ PL+GLTNL+ L++S +K+ D IA L GL L L+L + SL+ L +L
Sbjct: 90 DIAPLAGLTNLEWLELSYNKIED--IAPLAGLTNLEWLDLSYNKIEDIA--SLANLNNLK 145
Query: 232 YLNLNRCQLSDDG--------------------CEKFSKIGSLKVLNLGFNEITDECLVH 271
+L + Q+ D F+ + L L+L N+I D +
Sbjct: 146 FLAIRDNQIEDVAPLTNLTNLEVLWLDENKIGEVASFASLTQLTQLHLSGNQIED--VAP 203
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L LTNLESL L+ I D + +L +T L + LS I D L L GL + L L
Sbjct: 204 LANLTNLESLWLNENKIKD--VASLVSMTKLTQLYLSSNEIED--LAPLKGLPEMAELQL 259
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGA-------AYLRNFKN----------- 373
+ QI + +A L SLT LT L+L +I D +L+ KN
Sbjct: 260 NNNQIVN--VAPLASLTNLTTLELNENQIKDIAPLASLTQLGFLQLTKNQIVNISPLATL 317
Query: 374 --LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
L +L++ + D V + L++LT L L +N K + ++ LT L SL++SN+
Sbjct: 318 TKLETLQLLYNEIKD--VAPLASLTNLTFLTLGEN---QIKDVAPLASLTELTSLDLSNN 372
Query: 432 RITSAGLRHLKPLKNLRSLTL 452
I + + PL NL LT
Sbjct: 373 EI-----KDIDPLANLTQLTF 388
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 178/376 (47%), Gaps = 40/376 (10%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GL+NL L N + + AGL NL LDL +I + +L L L+ L
Sbjct: 94 LAGLTNLEWLELSYNKI---EDIAPLAGLTNLEWLDL-SYNKIE-DIASLANLNNLKFLA 148
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AAC 220
I+ N I D+ PL+ LTNL+ L + +K+ + +A L +LT L+L G + A
Sbjct: 149 IR-DNQI--EDVAPLTNLTNLEVLWLDENKIGE--VASFASLTQLTQLHLSGNQIEDVAP 203
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L +L+ L SL +LN N+ + + L L L NEI D L LKGL +
Sbjct: 204 LANLTNLESL-WLNENKIK----DVASLVSMTKLTQLYLSSNEIED--LAPLKGLPEMAE 256
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L L++ I + + L LTNL ++ L+ I D + LA L+ L L L QI +
Sbjct: 257 LQLNNNQIVN--VAPLASLTNLTTLELNENQIKD--IAPLASLTQLGFLQLTKNQIVN-- 310
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
++ L +LT L L L I D A L + NL L + + D V + L+ LT
Sbjct: 311 ISPLATLTKLETLQLLYNEIKD--VAPLASLTNLTFLTLGENQIKD--VAPLASLTELTS 366
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L+LS N K ++ ++ LT L L++S+++I L L L+ L L + ++
Sbjct: 367 LDLSNN---EIKDIDPLANLTQLTFLHLSDNQIKDVA--PLASLTQLKHLHLRNNEI--K 419
Query: 461 DIKRLQSRDLPNLVSF 476
DI R LPNL
Sbjct: 420 DIAR-----LPNLTQM 430
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 112/359 (31%), Positives = 170/359 (47%), Gaps = 39/359 (10%)
Query: 46 DKWMDVIASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
D+ D+ G ++L ++LS + + D + L +NL+ LD ++ +E +
Sbjct: 86 DEIKDIAPLAGLTNLEWLELSYNKIED--IAPLAGLTNLEWLDLSY------NKIEDIAS 137
Query: 105 LSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L+NL +L F R+N I + + L NL L L+ +I G + + L +L L++
Sbjct: 138 LANLNNLKFLAIRDNQI--EDVAPLTNLTNLEVLWLDE-NKI-GEVASFASLTQLTQLHL 193
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I D+ PL+ LTNL+SL ++ +K+ D +A L + KLT L L + L
Sbjct: 194 S-GNQI--EDVAPLANLTNLESLWLNENKIKD--VASLVSMTKLTQLYLSSNEIED--LA 246
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L L + L LN Q+ + + + +L L L N+I D + L LT L L
Sbjct: 247 PLKGLPEMAELQLNNNQIVN--VAPLASLTNLTTLELNENQIKD--IAPLASLTQLGFLQ 302
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L I + + L LT LE++ L + I D + LA L++L L L QI D +A
Sbjct: 303 LTKNQIVN--ISPLATLTKLETLQLLYNEIKD--VAPLASLTNLTFLTLGENQIKD--VA 356
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
L SLT LT LDL I D L N L L L+D +K + L+SLT L
Sbjct: 357 PLASLTELTSLDLSNNEIKDIDP--LANLTQLTFLH-----LSDNQIKDVAPLASLTQL 408
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 112/242 (46%), Gaps = 43/242 (17%)
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
D E SK+ L + +EI D + L GLTNLE L L I D + L GLTN
Sbjct: 69 DRAQESLSKMTELGIRG---DEIKD--IAPLAGLTNLEWLELSYNKIED--IAPLAGLTN 121
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--------------------L 341
LE ++LS+ I D + LA L++LK L + QI D +
Sbjct: 122 LEWLDLSYNKIED--IASLANLNNLKFLAIRDNQIEDVAPLTNLTNLEVLWLDENKIGEV 179
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
A+ SLT LT L L G +I D A L N NL SL + + D V + ++ LT L
Sbjct: 180 ASFASLTQLTQLHLSGNQIED--VAPLANLTNLESLWLNENKIKD--VASLVSMTKLTQL 235
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
LS N + L + GL + L ++N++I + PL +L +LT + ++ N
Sbjct: 236 YLSSN---EIEDLAPLKGLPEMAELQLNNNQIVNVA-----PLASLTNLT--TLELNENQ 285
Query: 462 IK 463
IK
Sbjct: 286 IK 287
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 146/345 (42%), Gaps = 70/345 (20%)
Query: 27 AFRDCALQDLC-LGQYPGVNDKWMDV-----IASQGS--SLLSVDLSGSDVTDSGLIHLK 78
A RD ++D+ L + W+D +AS S L + LSG+ + D L
Sbjct: 148 AIRDNQIEDVAPLTNLTNLEVLWLDENKIGEVASFASLTQLTQLHLSGNQIEDVA--PLA 205
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+ +NL+SL N +I D L ++ LT L N + + GL + +L L
Sbjct: 206 NLTNLESLWLNEN-KIKDVA--SLVSMTKLTQLYLSSNEI---EDLAPLKGLPEMAELQL 259
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
+ +VN+ L L +L N D+ PL+ LT L LQ++ +++ + S +
Sbjct: 260 N-----NNQIVNVAPLASLTNLTTLELNENQIKDIAPLASLTQLGFLQLTKNQIVNISPL 314
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A L L+ L LL E + ++ L SL +L L
Sbjct: 315 ATLTKLETLQLLYNE--------IKDVAPLASL---------------------TNLTFL 345
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLSFTGISDGS 316
LG N+I D + L LT L SL+L + I D + L NLT LT F +SD
Sbjct: 346 TLGENQIKD--VAPLASLTELTSLDLSNNEIKDIDPLANLTQLT--------FLHLSDNQ 395
Query: 317 LR---KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
++ LA L+ LK L+L +I D + L LT +D F
Sbjct: 396 IKDVAPLASLTQLKHLHLRNNEIKD-----IARLPNLTQMDNFSV 435
>gi|315301494|ref|ZP_07872641.1| internalin A, partial [Listeria ivanovii FSL F6-596]
gi|313630136|gb|EFR98122.1| internalin A [Listeria ivanovii FSL F6-596]
Length = 759
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 171/345 (49%), Gaps = 48/345 (13%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++ S + +TD L L + S L SL N Q++D L L+ L++LT L+ N IT
Sbjct: 103 LNFSYNQITD--LTPLANLSKLTSLVMNNN-QVAD--LTPLQNLTSLTDLTLFYN-KIT- 155
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ A L NL L I G L + L LE+L+I N +TD +KPL
Sbjct: 156 -DVTPLANLTNLTTL------AITGNEISDLTPIGSLTNLEALSI--GNQVTD--IKPLD 204
Query: 178 GLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
LTNL+ L +S +K+TD S +A L LQ LTL N + +T L L +L L+L
Sbjct: 205 KLTNLEQLNLSDNKITDISPVAKLINLQSLTLDNNQFSDLTP-----LGILTNLTELSLY 259
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
LSD G + + +LK LNL N+I++ L + LTNL LN+ + I D L +
Sbjct: 260 SNHLSDIGT--LASLTNLKKLNLMDNQISN--LAPISNLTNLTDLNVSTNQISD--LKPI 313
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LTNL + + + D + ++ L++L L L + QI+D ++ L +LT L L +
Sbjct: 314 SNLTNLTVLQVPTNQVED--ISPISSLTNLDFLTLYSNQISD--ISPLENLTKLKQLFFY 369
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
+++D + L N L+ L AG I DL+ L L
Sbjct: 370 DNKVSD--VSPLANLTTLQELS--------AGTNQISDLTPLAKL 404
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 122/399 (30%), Positives = 186/399 (46%), Gaps = 68/399 (17%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAG---LINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L +TSL RN +K+ AG L N+ +L+ + + +L L L L
Sbjct: 75 LDGITSLEADRN------VIKSIAGVEYLNNVTQLNFS-----YNQITDLTPLANLSKLT 123
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
N +D+ PL LT+L L + +K+TD + L L LT L + G ++
Sbjct: 124 SLVMNNNQVADLTPLQNLTSLTDLTLFYNKITD--VTPLANLTNLTTLAITGNEIS---- 177
Query: 222 DSLSALGSLFYLNLNRC----QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
L+ +GSL NL Q++D + K+ +L+ LNL N+ITD + + L N
Sbjct: 178 -DLTPIGSL--TNLEALSIGNQVTD--IKPLDKLTNLEQLNLSDNKITD--ISPVAKLIN 230
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L+SL LD+ D L L LTNL ++L +SD + LA L++LK LNL QI+
Sbjct: 231 LQSLTLDNNQFSD--LTPLGILTNLTELSLYSNHLSD--IGTLASLTNLKKLNLMDNQIS 286
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
+ LA +++LT LT L++ +I+D + N NL L++ + D + I L++
Sbjct: 287 N--LAPISNLTNLTDLNVSTNQISDLKP--ISNLTNLTVLQVPTNQVED--ISPISSLTN 340
Query: 398 LTLLNLSQNC--------NLT--------DKTLELISGLTGLVSLNVSNSRITSAG---L 438
L L L N NLT D + +S L L +L + SAG +
Sbjct: 341 LDFLTLYSNQISDISPLENLTKLKQLFFYDNKVSDVSPLANLTTL-----QELSAGTNQI 395
Query: 439 RHLKPLKNLRSLT---LESCKVTANDIKRLQSRDLPNLV 474
L PL L LT L+ KVT+ +K + +PN V
Sbjct: 396 SDLTPLAKLTRLTQLGLDKQKVTSQPVKYQSNIVVPNAV 434
>gi|356551924|ref|XP_003544322.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
Length = 652
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 122/443 (27%), Positives = 199/443 (44%), Gaps = 80/443 (18%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTD--SGLI 75
LT+V+ +A + L+ LCLG+ G+ D + IA + S L V L VTD +GLI
Sbjct: 139 LTDVAAKAIAEAVNLERLCLGRCKGITDLGIGCIAVRCSKLRHVGLRWCIRVTDFGAGLI 198
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF-AGLINLV 134
+K C ++SLD ++ + I++ L H+ L +L L I G+ A ++
Sbjct: 199 AIK-CKEIRSLDLSY-LPITEKCLNHILQLEHLEDLILEHCLGIEDHGLATLQASCKSMK 256
Query: 135 KLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L+L +C I H G+ +L SG NL+ L +S S +
Sbjct: 257 MLNLSKCQNIGHIGIASLT------------------------SGSQNLEKLILSSSVIV 292
Query: 194 DSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQ-LSDDG------ 244
+ +A L+ +L + L+ C T + L ++ LG SL LNL++C ++D+
Sbjct: 293 TTDLAKCLQSFSRLQSVKLDSCLGTKSGLKAIGNLGASLKELNLSKCVGVTDENLPFLVQ 352
Query: 245 ----CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL 299
EK + + + +T+ CL L SL ++SC + EG + +
Sbjct: 353 PHKDLEKLDITCCHTITHASISSLTNSCL-------RLTSLRMESCSLVSREGFLFIGRC 405
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAAL-TSLTGLTHLDLF- 356
LE ++++ T I D L+ ++ + L SL L ITD GL + +S + L LDL+
Sbjct: 406 QLLEELDVTDTEIDDQGLQSISRCTKLSSLKLGICSMITDNGLKHIASSCSKLKQLDLYR 465
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+RITD G + I G SL ++N++ N N TD +LE
Sbjct: 466 SSRITDEGI-----------VAIALG------------CPSLEVVNIAYNSNTTDTSLEF 502
Query: 417 ISGLTGLVSLNVSN-SRITSAGL 438
+S L +L + RI+ GL
Sbjct: 503 LSKCQKLRTLEIRGCPRISPKGL 525
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 33/188 (17%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN 117
L +D++ +++ D GL + C+ L SL C I+D GL+H+ S L L R++
Sbjct: 408 LEELDVTDTEIDDQGLQSISRCTKLSSLKLGICSMITDNGLKHIASSCSKLKQLDLYRSS 467
Query: 118 AITAQGMKAFA------GLINLV--------------------KLDLERCTRIHG-GLVN 150
IT +G+ A A ++N+ L++ C RI GL N
Sbjct: 468 RITDEGIVAIALGCPSLEVVNIAYNSNTTDTSLEFLSKCQKLRTLEIRGCPRISPKGLSN 527
Query: 151 LKGLMK-LESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSG---IAYLKGLQK 205
+ + LE L+IK C+ I D+ M L+ + NLK +++S VTD G +A + LQ
Sbjct: 528 IVARCRYLEMLDIKKCHKINDTGMIQLAQHSQNLKHIKLSYCSVTDVGLIALASISCLQH 587
Query: 206 LTLLNLEG 213
+++ ++EG
Sbjct: 588 ISIFHVEG 595
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 156/342 (45%), Gaps = 52/342 (15%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C C+ ++D+ LT+ V IA L++L L +G +T + +
Sbjct: 125 CTCLVEADLSNRPDLTD----------VAAKAIAEAVNLERLCLGRCKG--ITDLGIGCI 172
Query: 225 SALGS-LFYLNLNRC-QLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ S L ++ L C +++D G + K ++ L+L + IT++CL H+ L +LE L
Sbjct: 173 AVRCSKLRHVGLRWCIRVTDFGAGLIAIKCKEIRSLDLSYLPITEKCLNHILQLEHLEDL 232
Query: 282 NLDSC-GIGDEGLVNL---------------------------TGLTNLESINLSFTGIS 313
L+ C GI D GL L +G NLE + LS + I
Sbjct: 233 ILEHCLGIEDHGLATLQASCKSMKMLNLSKCQNIGHIGIASLTSGSQNLEKLILSSSVIV 292
Query: 314 DGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGAR-ITDSGAAYL-R 369
L K L S L+S+ LD+ T +GL A+ +L L L+L +TD +L +
Sbjct: 293 TTDLAKCLQSFSRLQSVKLDSCLGTKSGLKAIGNLGASLKELNLSKCVGVTDENLPFLVQ 352
Query: 370 NFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDKTLELISGLTGLV-SL 426
K+L L+I C +T A + + + S L L +L ++C+L + L G L+ L
Sbjct: 353 PHKDLEKLDITCCHTITHASISSLTN-SCLRLTSLRMESCSLVSREGFLFIGRCQLLEEL 411
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQS 467
+V+++ I GL+ + L SL L C +T N +K + S
Sbjct: 412 DVTDTEIDDQGLQSISRCTKLSSLKLGICSMITDNGLKHIAS 453
>gi|290975915|ref|XP_002670687.1| predicted protein [Naegleria gruberi]
gi|284084248|gb|EFC37943.1| predicted protein [Naegleria gruberi]
Length = 402
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 125/264 (47%), Gaps = 2/264 (0%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L +L IS + + + G ++ L++LTLLN+ + + L L YL++++ +
Sbjct: 130 LTTLYISRNNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDIR 189
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
+G S++ L L + N I +E HL LTNL L G EG +++ +
Sbjct: 190 SNGALYISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMKQ 249
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARI 360
L ++N++ I D + ++ + L LN+ + +ITD L LT L + I
Sbjct: 250 LINLNINDNFIGDEGAKYISEMKQLTILNIGSNEITDRVNFENFGQLNQLTELYIEDNSI 309
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
+ Y+ +NL L+I G + G K+I ++ LT L + N L ++ + IS +
Sbjct: 310 QTNACKYISQLQNLNLLDISGNNVDAEGAKYISQMNQLTELEIHTNS-LGNEGAKHISTM 368
Query: 421 TGLVSLNVSNSRITSAGLRHLKPL 444
L L + ++ ++ +H++ +
Sbjct: 369 KELEYLYLCDNDVSVEVKQHIREI 392
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 1/242 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I + K +S L L L IS + + + G Y+ L+KLT L++ + + +S
Sbjct: 138 NNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDIRSNGALYIS 197
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L L L ++ + ++G K+ +L L NE E H+ + L +LN++
Sbjct: 198 ELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMKQLINLNIND 257
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLAAL 344
IGDEG ++ + L +N+ I+D + L+ L L ++ I +
Sbjct: 258 NFIGDEGAKYISEMKQLTILNIGSNEITDRVNFENFGQLNQLTELYIEDNSIQTNACKYI 317
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
+ L L LD+ G + GA Y+ L LEI L + G KHI + L L L
Sbjct: 318 SQLQNLNLLDISGNNVDAEGAKYISQMNQLTELEIHTNSLGNEGAKHISTMKELEYLYLC 377
Query: 405 QN 406
N
Sbjct: 378 DN 379
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 2/214 (0%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
SL L + N I ++ H+ L L LN+ S I +EG + L L +++S I
Sbjct: 129 SLTTLYISRNNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDI 188
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
++ L L SL + + I + G A L LT LT L+ GA ++ K
Sbjct: 189 RSNGALYISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMK 248
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNS 431
L +L I + D G K+I ++ LT+LN+ N +TD+ E L L L + ++
Sbjct: 249 QLINLNINDNFIGDEGAKYISEMKQLTILNIGSN-EITDRVNFENFGQLNQLTELYIEDN 307
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
I + +++ L+NL L + V A K +
Sbjct: 308 SIQTNACKYISQLQNLNLLDISGNNVDAEGAKYI 341
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 121/303 (39%), Gaps = 51/303 (16%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC-TRIHGGLVNLK 152
I + G +H+ L LT L+ NN I +G K L L LD+ + R +G L
Sbjct: 140 IENDGAKHISALKQLTLLNISSNN-IEEEGAKYIGKLEKLTYLDISKNDIRSNGALY--- 195
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+S L L SL IS + + + G A+L L LT L
Sbjct: 196 -----------------------ISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETV 232
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
A +S + L LN+N + D+G + S++ L +LN+G NEITD
Sbjct: 233 RNEFGAEGAKHISEMKQLINLNINDNFIGDEGAKYISEMKQLTILNIGSNEITDRV---- 288
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
N E N L L + + I + + ++ L +L L++
Sbjct: 289 ----NFE---------------NFGQLNQLTELYIEDNSIQTNACKYISQLQNLNLLDIS 329
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+ G ++ + LT L++ + + GA ++ K L L +C ++ +HI
Sbjct: 330 GNNVDAEGAKYISQMNQLTELEIHTNSLGNEGAKHISTMKELEYLYLCDNDVSVEVKQHI 389
Query: 393 KDL 395
+++
Sbjct: 390 REI 392
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 4/220 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L +D+S +D+ +G +++ + L SL + I + G HL L+NLT L RN
Sbjct: 176 EKLTYLDISKNDIRSNGALYISELKQLTSLVIS-SNNIDEEGAAHLIKLTNLTELETVRN 234
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS-DMKP 175
A+G K + + L+ L++ G + + +L LNI N ITD + +
Sbjct: 235 -EFGAEGAKHISEMKQLINLNINDNFIGDEGAKYISEMKQLTILNI-GSNEITDRVNFEN 292
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L L I + + + Y+ LQ L LL++ G V A +S + L L +
Sbjct: 293 FGQLNQLTELYIEDNSIQTNACKYISQLQNLNLLDISGNNVDAEGAKYISQMNQLTELEI 352
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ L ++G + S + L+ L L N+++ E H++ +
Sbjct: 353 HTNSLGNEGAKHISTMKELEYLYLCDNDVSVEVKQHIREI 392
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
K+L +L I + + G KHI L LTLLN+S N N+ ++ + I L L L++S +
Sbjct: 128 KSLTTLYISRNNIENDGAKHISALKQLTLLNISSN-NIEEEGAKYIGKLEKLTYLDISKN 186
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKV 457
I S G ++ LK L SL + S +
Sbjct: 187 DIRSNGALYISELKQLTSLVISSNNI 212
>gi|421610748|ref|ZP_16051914.1| leucine-rich repeat domain protein [Rhodopirellula baltica SH28]
gi|408498532|gb|EKK03025.1| leucine-rich repeat domain protein [Rhodopirellula baltica SH28]
Length = 341
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 109/251 (43%), Gaps = 27/251 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L ++L PVT L S+S L L LNL +++ + E SK+
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLP------------- 213
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
LESL L G EG+ + + LE INL T I + SL+ G +S
Sbjct: 214 ------------LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 326 LKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L LN+D IT+ + + SL L L L ++ L+ + L +L + GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321
Query: 385 TDAGVKHIKDL 395
+ K ++ +
Sbjct: 322 EEEPAKELEAM 332
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 26/273 (9%)
Query: 230 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+ ++L SD DG K S ++ L + +D ++ L L NL+ L +
Sbjct: 69 VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
D +++GL L ++ T ++D LA L+ L+ ++L +TD LA++++L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188
Query: 348 TGLTHLDLFGARI--------------------TDSGAAYLRNFKNLRSLEICGGGLT-- 385
LT L+L G +I TD G + N+ LE LT
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGPEGMPAIANIEGLEKINLWLTKI 248
Query: 386 -DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
+ +K + +SLT+LN+ +T++ + +I L L L++ + ++ L LKPL
Sbjct: 249 DNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPL 308
Query: 445 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
+ L +L + + + K L++ PNL F
Sbjct: 309 QELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 10/165 (6%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+ G+S+L+ V L S VTD L + L L+ +I+ E +
Sbjct: 153 VTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISK 211
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL + +GM A A + L K++L + L +G L LN+
Sbjct: 212 LP-LESLELAETD-FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDN 269
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
C IT+ + + L +LK L + + V+ + LK LQ+L L
Sbjct: 270 CPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETL 314
>gi|395539122|ref|XP_003771522.1| PREDICTED: F-box/LRR-repeat protein 13, partial [Sarcophilus
harrisii]
Length = 509
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 116/421 (27%), Positives = 184/421 (43%), Gaps = 76/421 (18%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC-SNLQSLDFNFC 91
LQ+L + Q G+ND M + SL+ ++++ +D+++ L L C NLQ L +C
Sbjct: 83 LQELNVSQCEGLNDDAMRYVLEGCPSLIHLNIAHTDISNGTLKLLSRCFPNLQKLSLAYC 142
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLVKLDL------ 138
++ GL +L +G +T+L I+ QG K A G+ +LV D+
Sbjct: 143 RNFTEKGLLYLNLGKGCHKITNLDLSGCTQISVQGFKDIASSCTGIKHLVINDMPTLTDN 202
Query: 139 ------ERCTRIHGGL----------------------VNLKGLMKLESLNIKW------ 164
ERC I + V ++G ++ L K
Sbjct: 203 CIKALVERCKSITSVIFIGSPHLSDTAFKYLTDCSLNKVRVEGNNRITDLTFKLMDKHYG 262
Query: 165 ---------CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI-AYLKGL--QKLTLLNL 211
C ITD +K ++ L NL L ++ C ++ D G+ ++L G KL LNL
Sbjct: 263 DLSHIYMTDCERITDVSLKSIANLKNLVVLNLANCIRIGDVGLRSFLGGPSSSKLRELNL 322
Query: 212 EGCPVTAACLDSLSALG----SLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 266
C + SL+ +G SL YLNL C QL+D G E +K+ +L ++L ITD
Sbjct: 323 THCAQISDL--SLAEMGERCRSLTYLNLRSCTQLTDCGIEFITKLPNLISIDLSVTAITD 380
Query: 267 ECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTN-LESINLSFTGISDGSLRKLAGLS 324
E L L L+ L++ C I D G+ + T LE +++SF G + K
Sbjct: 381 EALTSLSNHKKLKELSVSECEFITDSGVKHFCQSTPILEHLDVSFCLKLSGEILKALSTK 440
Query: 325 SLKSLNLD---ARQITDTGLAALTSLTGLTH-LDLFG-ARITDSGAAY-LRNFKNLRSLE 378
L+ +L ++ D + L+ H LD+ G R+TD Y L+ K LR L+
Sbjct: 441 CLRLTSLSIAGCPKMNDLAIRILSKKCHYLHILDVSGCVRLTDKAIEYLLQGCKQLRILK 500
Query: 379 I 379
+
Sbjct: 501 M 501
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 110/432 (25%), Positives = 186/432 (43%), Gaps = 74/432 (17%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK-AFAGLI------NLVK 135
L +D+ C Q++ R ++ L SL N ++ Q + F G I N+++
Sbjct: 5 LSVIDWANCAQVNSTW----RSMTYLRSLWSDINFSLVYQIVNDRFIGCILQRWRPNVLR 60
Query: 136 LDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVT 193
L+ C+ + L K L+ LN+ C + D M+ L G +L L I+ + ++
Sbjct: 61 LNFHGCSSLQWPSFKLINQCKNLQELNVSQCEGLNDDAMRYVLEGCPSLIHLNIAHTDIS 120
Query: 194 DSGIAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+ + L LQKL+L A C + L YLNL + GC K +
Sbjct: 121 NGTLKLLSRCFPNLQKLSL---------AYCRNFTEK--GLLYLNLGK------GCHKIT 163
Query: 250 KI---GSLKVLNLGFNEITDEC--LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
+ G ++ GF +I C + HL + ++ +L + E ++T + + S
Sbjct: 164 NLDLSGCTQISVQGFKDIASSCTGIKHLV-INDMPTLTDNCIKALVERCKSITSVIFIGS 222
Query: 305 INLS---FTGISDGSLRKL--AGLSSLKSLNL----------------DARQITDTGLAA 343
+LS F ++D SL K+ G + + L D +ITD L +
Sbjct: 223 PHLSDTAFKYLTDCSLNKVRVEGNNRITDLTFKLMDKHYGDLSHIYMTDCERITDVSLKS 282
Query: 344 LTSLTGLTHLDLFGA-RITDSGAAYLRNF------KNLRSLEICG-GGLTDAGVKHIKD- 394
+ +L L L+L RI D G LR+F LR L + ++D + + +
Sbjct: 283 IANLKNLVVLNLANCIRIGDVG---LRSFLGGPSSSKLRELNLTHCAQISDLSLAEMGER 339
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
SLT LNL LTD +E I+ L L+S+++S + IT L L K L+ L++
Sbjct: 340 CRSLTYLNLRSCTQLTDCGIEFITKLPNLISIDLSVTAITDEALTSLSNHKKLKELSVSE 399
Query: 455 CK-VTANDIKRL 465
C+ +T + +K
Sbjct: 400 CEFITDSGVKHF 411
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 33/164 (20%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L+S+DLS + +TD L L + L+ L + C I+D G++H F ++
Sbjct: 367 NLISIDLSVTAITDEALTSLSNHKKLKELSVSECEFITDSGVKH-----------FCQST 415
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL----MKLESLNIKWCNCITDSDM 173
I L LD+ C ++ G + LK L ++L SL+I C + D +
Sbjct: 416 PI-------------LEHLDVSFCLKLSGEI--LKALSTKCLRLTSLSIAGCPKMNDLAI 460
Query: 174 KPLSGLTN-LKSLQIS-CSKVTDSGIAY-LKGLQKLTLLNLEGC 214
+ LS + L L +S C ++TD I Y L+G ++L +L + C
Sbjct: 461 RILSKKCHYLHILDVSGCVRLTDKAIEYLLQGCKQLRILKMRYC 504
>gi|290998760|ref|XP_002681948.1| predicted protein [Naegleria gruberi]
gi|284095574|gb|EFC49204.1| predicted protein [Naegleria gruberi]
Length = 391
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 7/339 (2%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGG 147
N ++ D L+++ L LTSL I + A L L +LD+ + G
Sbjct: 53 NKKFKVDDETLQYIGELKQLTSLHIH---GIGIDNVWDIADLKQLTELDISDNKINSEGA 109
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
V + L L+I N D K +S L L L +S +++ + + Y+ + LT
Sbjct: 110 RVISESFKHLTKLDI--SNNTIDVGTKYISQLKQLTYLDVSNNEIEEEDVKYIGNMNGLT 167
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+++ + +S L + L++ + D+G + S++ L LN+GFN I
Sbjct: 168 SLSIQYNHIGNIGAQYISGLKQITTLSIYSGDIGDEGAKYISEMKQLTNLNIGFNNINIR 227
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
+H+ L L L++ + G GL +T L L + + I ++ ++ + L
Sbjct: 228 GAIHISKLKQLTELSISANNFGSGGLKYITQLKQLTKLYCCDSEIDSEGVKYISEMKQLT 287
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
++L I G+ L L LT L + G + + GA Y+ L L+IC ++D
Sbjct: 288 DVDLSYNNINSEGVKYLNKLKKLTKLYIGGNDLGNKGAMYISRLNQLTHLDICRNNVSDE 347
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
G K I + L+ L +S+N ++ + +E I +T S+
Sbjct: 348 GFKSISKMKQLSSLFISENT-ISGEGVEYIRKMTQAASI 385
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 118/256 (46%), Gaps = 3/256 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ L +D+S +++ + + ++ + + L SL + I + G +++ GL +T+LS
Sbjct: 137 SQLKQLTYLDVSNNEIEEEDVKYIGNMNGLTSLSIQYN-HIGNIGAQYISGLKQITTLSI 195
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ I +G K + + L L++ G +++ L +L L+I N +
Sbjct: 196 YSGD-IGDEGAKYISEMKQLTNLNIGFNNINIRGAIHISKLKQLTELSIS-ANNFGSGGL 253
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K ++ L L L S++ G+ Y+ +++LT ++L + + + L+ L L L
Sbjct: 254 KYITQLKQLTKLYCCDSEIDSEGVKYISEMKQLTDVDLSYNNINSEGVKYLNKLKKLTKL 313
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ L + G S++ L L++ N ++DE + + L SL + I EG+
Sbjct: 314 YIGGNDLGNKGAMYISRLNQLTHLDICRNNVSDEGFKSISKMKQLSSLFISENTISGEGV 373
Query: 294 VNLTGLTNLESINLSF 309
+ +T SI + F
Sbjct: 374 EYIRKMTQAASICVDF 389
>gi|290989491|ref|XP_002677371.1| Hypothetical protein NAEGRDRAFT_67509 [Naegleria gruberi]
gi|284090978|gb|EFC44627.1| Hypothetical protein NAEGRDRAFT_67509 [Naegleria gruberi]
Length = 350
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 132/296 (44%), Gaps = 10/296 (3%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N + ++ +K SG NL L + + + +L L +LT LN++ + +DS+
Sbjct: 56 INILLETLLKSFSG-RNLTKLDLRRNFIHAKLAEHLGNLHQLTDLNVDDSFIVEPAIDSI 114
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
L L L++N L + ++ L VL++ N + L+ L+NL LN+
Sbjct: 115 RYLTKLSTLSINSNNLKTKELKIIKEMKQLTVLSIAKNSMQSGGAKLLRNLSNLTILNIS 174
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN------LDARQITD 338
+ IG+EG L + L +N+S T IS + L +L LN L Q
Sbjct: 175 NNRIGNEGWKYLCSMKQLTKLNISGTNISSEGISYLTNFPNLTELNFSGNTSLRFSQKVQ 234
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L+ L LT L + I D Y+ + L SL + + DA HI L
Sbjct: 235 EQLSELKYLTKLVINYIHPIPIDD--LQYIHKLEKLTSLSLKSNFMYDASAIHISKCEKL 292
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
T L+++ N NL+D E S L L LN+S + ++ G+ L+ + L SL ES
Sbjct: 293 TYLDVAIN-NLSDAAAEAFSHLPNLKYLNISENYLSKKGVELLRNMPQLTSLIYES 347
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L++ SNL L+ + +I + G ++L + LT L+ N I+++G+ NL +L
Sbjct: 162 LRNLSNLTILNISNN-RIGNEGWKYLCSMKQLTKLNISGTN-ISSEGISYLTNFPNLTEL 219
Query: 137 D------LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
+ L ++ L LK L KL I + + I D++ + L L SL + +
Sbjct: 220 NFSGNTSLRFSQKVQEQLSELKYLTKLV---INYIHPIPIDDLQYIHKLEKLTSLSLKSN 276
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+ D+ ++ +KLT L++ ++ A ++ S L +L YLN++ LS G E
Sbjct: 277 FMYDASAIHISKCEKLTYLDVAINNLSDAAAEAFSHLPNLKYLNISENYLSKKGVE 332
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 334 RQITDTGLAA-LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
R LA L +L LT L++ + I + +R L +L I L +K I
Sbjct: 79 RNFIHAKLAEHLGNLHQLTDLNVDDSFIVEPAIDSIRYLTKLSTLSINSNNLKTKELKII 138
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
K++ LT+L++++N + +L+ L+ L LN+SN+RI + G ++L +K L L +
Sbjct: 139 KEMKQLTVLSIAKNS-MQSGGAKLLRNLSNLTILNISNNRIGNEGWKYLCSMKQLTKLNI 197
Query: 453 ESCKVTANDIKRLQSRDLPNL 473
+++ I L + PNL
Sbjct: 198 SGTNISSEGISYLT--NFPNL 216
>gi|384252153|gb|EIE25630.1| hypothetical protein COCSUDRAFT_83637 [Coccomyxa subellipsoidea
C-169]
Length = 433
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 114/435 (26%), Positives = 201/435 (46%), Gaps = 70/435 (16%)
Query: 32 ALQ-DLCLGQ-YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN 89
ALQ +CL + +P + +MD +G V+++ VT++G + L++L
Sbjct: 56 ALQHPVCLAERFPELQALFMD--GCEG-----VNMTNEQVTEAGRLRY-----LKTLSLA 103
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C +D GL L + L LS + NA+T++ + +L+ LDL +C
Sbjct: 104 GCRACTDKGLAGLAVIEGLQKLSLSKCNALTSRTLDLLQTSSSLISLDLGQCA------- 156
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
W + DS M L +LK L ++ C ++T+ G+ + L+ +
Sbjct: 157 --------------W---VDDSSMALLCNSASLKQLSLADCVRLTNRGVQSVAKLKCIEA 199
Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEIT 265
LNL G + A +++L+A+ SL LNL+RC Q+ +K+G L L++ I
Sbjct: 200 LNLSGLREIDDAGVEALAAVTSLRELNLDRCGQVRG---LTLAKLGGLHKLSMCDCPCIA 256
Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISD-GSLRKLAGL 323
D+ L L G+T+LE L LD C I D+G L ++ LE ++L D ++R+L+ L
Sbjct: 257 DDSLGCLSGVTSLEDLKLDMCDKITDKGAGALASMSALEDLDLHRCERLDCEAMRRLSAL 316
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG- 382
L+SL L +G + + GL HL R L L++ G
Sbjct: 317 GQLRSLRL-------SGCVYIKA-EGLGHL--------------ARGCPLLSRLDLAGCV 354
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
G+ D G++ + ++ L LN++Q ++D +++ + + V + I+ GL+ L+
Sbjct: 355 GIKDEGMQALAEMQHLQALNINQCKYVSDAGAAVLATSVSIRDVFVLTTNISQHGLQLLQ 414
Query: 443 PLKNLRSLTLESCKV 457
L+ T+ C +
Sbjct: 415 DALGLQPTTMSPCHL 429
>gi|440712554|ref|ZP_20893170.1| hypothetical protein RBSWK_00227 [Rhodopirellula baltica SWK14]
gi|436442709|gb|ELP35820.1| hypothetical protein RBSWK_00227 [Rhodopirellula baltica SWK14]
Length = 341
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 108/249 (43%), Gaps = 27/249 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L ++L PVT L S+S L L LNL +++ + E SK+
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLP------------- 213
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
LESL L G EG+ + + LE INL T I + SL+ G +S
Sbjct: 214 ------------LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 326 LKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L LN+D IT+ + + SL L L L ++ L+ + L +L + GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321
Query: 385 TDAGVKHIK 393
+ K ++
Sbjct: 322 EEEPAKELE 330
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 26/273 (9%)
Query: 230 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+ ++L SD DG K S ++ L + +D ++ L L NL+ L +
Sbjct: 69 VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
D +++GL L ++ T ++D LA L+ L+ ++L +TD LA++++L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188
Query: 348 TGLTHLDLFGARI--------------------TDSGAAYLRNFKNLRSLEICGGGLT-- 385
LT L+L G +I TD G + N+ LE LT
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGPEGMPAIANIEGLEKINLWLTKI 248
Query: 386 -DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
+ +K + +SLT+LN+ +T++ + +I L L L++ + ++ L LKPL
Sbjct: 249 DNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPL 308
Query: 445 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
+ L +L + + + K L++ PNL F
Sbjct: 309 QELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 10/165 (6%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+ G+S+L+ V L S VTD L + L L+ +I+ E +
Sbjct: 153 VTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISK 211
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL + +GM A A + L K++L + L +G L LN+
Sbjct: 212 LP-LESLELAETD-FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDN 269
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
C IT+ + + L +LK L + + V+ + LK LQ+L L
Sbjct: 270 CPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETL 314
>gi|312385235|gb|EFR29787.1| hypothetical protein AND_01026 [Anopheles darlingi]
Length = 627
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 140/315 (44%), Gaps = 26/315 (8%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGG-LVNLKGLMKLESL 160
GL L ++ RNN IT M+ F G NL++LDL R R+ G +LK L L +
Sbjct: 130 GLVRLKTIDLSRNN-ITQLSMENFRGQDNLLELDLSRNRLERVASGTFAHLKELKTLHMI 188
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ + I + + + L LK L +S + + D K +Q L + GC ++
Sbjct: 189 D----SSINELNTRLFLHLAKLKYLDLSMNSIEDLAPEVFKDVQDLKTFKVRGCRLSNVN 244
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTN 277
+ L L L+L + Q E+F + L+ L L N+ I DE +H KGLT
Sbjct: 245 PQIYNILSHLTELDLGQNQFKFLDKEEFKDLRHLRKLRLDGNQLSVIVDELFLHQKGLTF 304
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK---SLNLDAR 334
L+ I D NL LT L+ + I LR L L +L +L LD
Sbjct: 305 LDISRNRLAKIADRAFENLVNLTFLDVSYNKLSHIEPVCLRPLRNLQTLNISGNLALDLT 364
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKH 391
++ DT + + ++ L I D G+ L FK L +L + G + + ++
Sbjct: 365 EMEDT-IQTVKDISSLV--------IADLGSLPLNLFTPFKRLTALNLSGNHIDNITIQI 415
Query: 392 IKDLSSLTLLNLSQN 406
I+ L+ L L+LS+N
Sbjct: 416 IEPLAQLEFLDLSRN 430
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 36/325 (11%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
LE L + N + D + GL LK++ +S + +T + +G L L+L +
Sbjct: 110 LEILRVVESNVPSIGD-RSFWGLVRLKTIDLSRNNITQLSMENFRGQDNLLELDLSRNRL 168
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+ + L L L++ +++ F + LK L+L N I D K +
Sbjct: 169 ERVASGTFAHLKELKTLHMIDSSINELNTRLFLHLAKLKYLDLSMNSIEDLAPEVFKDVQ 228
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+L++ + C + + L++L ++L + L L+ L LD Q+
Sbjct: 229 DLKTFKVRGCRLSNVNPQIYNILSHLTELDLGQNQFKFLDKEEFKDLRHLRKLRLDGNQL 288
Query: 337 TDTGLAALTSLTGLTHLDLFG---ARITDSG-----------AAY----------LRNFK 372
+ GLT LD+ A+I D +Y LR +
Sbjct: 289 SVIVDELFLHQKGLTFLDISRNRLAKIADRAFENLVNLTFLDVSYNKLSHIEPVCLRPLR 348
Query: 373 NLRSLEICGG---GLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
NL++L I G LT+ ++ +KD+SSL + +L L L + L +LN
Sbjct: 349 NLQTLNISGNLALDLTEMEDTIQTVKDISSLVI------ADLGSLPLNLFTPFKRLTALN 402
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTL 452
+S + I + ++ ++PL L L L
Sbjct: 403 LSGNHIDNITIQIIEPLAQLEFLDL 427
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 111/250 (44%), Gaps = 23/250 (9%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPG-----VNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
+ +++ E F+D +QDL + G VN + +++ S L +DL +
Sbjct: 216 IEDLAPEVFKD--VQDLKTFKVRGCRLSNVNPQIYNIL----SHLTELDLGQNQFKFLDK 269
Query: 75 IHLKDCSNLQSL--DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
KD +L+ L D N I D H +GL T L RN + +AF L+N
Sbjct: 270 EEFKDLRHLRKLRLDGNQLSVIVDELFLHQKGL---TFLDISRNR-LAKIADRAFENLVN 325
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK-PLSGLTNLKSLQISCSK 191
L LD+ H V L+ L L++LNI + ++M+ + + ++ SL I+
Sbjct: 326 LTFLDVSYNKLSHIEPVCLRPLRNLQTLNISGNLALDLTEMEDTIQTVKDISSLVIA--D 383
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL---SDDGCEKF 248
+ + ++LT LNL G + + + L L +L+L+R QL + +
Sbjct: 384 LGSLPLNLFTPFKRLTALNLSGNHIDNITIQIIEPLAQLEFLDLSRNQLNGIPERYAAQL 443
Query: 249 SKIGSLKVLN 258
S+I +K+ N
Sbjct: 444 SRIADVKLEN 453
>gi|426371210|ref|XP_004052544.1| PREDICTED: F-box/LRR-repeat protein 14 [Gorilla gorilla gorilla]
Length = 307
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 159/326 (48%), Gaps = 58/326 (17%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKL 206
K + L +LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L
Sbjct: 20 KEIGSLRALNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRL 77
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
LNL C LSD G IG L + E
Sbjct: 78 KSLNLRSCR-----------------------HLSDVG------IGHLAGMTRSAAE--- 105
Query: 267 ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGL 323
G LE L L C + D L +++ GLT L +NLSF G ISD L L+ +
Sbjct: 106 -------GCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHM 158
Query: 324 SSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLE 378
SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL
Sbjct: 159 GSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLS 217
Query: 379 ICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITS 435
+C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT
Sbjct: 218 LCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITK 277
Query: 436 AGLRHLKPLKNLRSLTLESCKVTAND 461
GL + L L+ L L ++T ++
Sbjct: 278 RGLERITQLPCLKVLNLGLWQMTDSE 303
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 165/331 (49%), Gaps = 69/331 (20%)
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
K+ +L++L+ + C QI+D L + AQ +K L L+
Sbjct: 20 KEIGSLRALNLSLCKQITDSSLGRI------------------AQYLKG------LEVLE 55
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+ L +
Sbjct: 56 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 115
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C +SD
Sbjct: 116 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 175
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGL 299
G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 176 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM--- 231
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG 357
+R++ G L++LN+ +ITD GL + L+ LT +DL+G
Sbjct: 232 -----------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 271
Query: 358 -ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
RIT G + L+ L + +TD+
Sbjct: 272 CTRITKRGLERITQLPCLKVLNLGLWQMTDS 302
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 121 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 180
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 181 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 240
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 241 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 277
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 278 RGLERITQLPCLKVLNLGLWQMTD 301
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 112/234 (47%), Gaps = 41/234 (17%)
Query: 250 KIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
+IGSL+ LNL +ITD L + + L LE L L C N+
Sbjct: 21 EIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCS------------------NI 62
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------GLTHLDLFGA 358
+ TG+ L GL LKSLNL + R ++D G+ L +T GL L L
Sbjct: 63 TNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDC 118
Query: 359 -RITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-T 413
++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL N++D
Sbjct: 119 QKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCDNISDTGI 177
Query: 414 LELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
+ L G L L+VS ++ L ++ + L L+SL+L SC ++ + I R+
Sbjct: 178 MHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM 231
>gi|157877504|ref|XP_001687069.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68130144|emb|CAJ09455.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 1207
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 139/290 (47%), Gaps = 33/290 (11%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
SG+ L L++L L++ P+ A L +L+ SL + L+RC+ E ++ L
Sbjct: 421 SGVRSLGSLKQLRCLHILYTPLHEAFLQALTTCSSLECIILHRCR-GVRSLEPLRRLQHL 479
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGL--------TNLES 304
+ L+L +TD L+ L G T L L LD C I D L NL G T L +
Sbjct: 480 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRGTLERLLMPRTLLSN 539
Query: 305 INLSFTGISDG-------SLRKLAG------LSSLKSLNLDARQITDTGLAALTSLTGLT 351
N+ G+ D SLR+L L++L+ LNL +TD G +AL + L
Sbjct: 540 ANMQHIGLCDKLVELHLQSLRQLTDIGVLKDLTALRVLNLSDNLVTDEGCSALHCMPSLQ 599
Query: 352 HLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L+L R IT AA+ R L SL++ +TDAGV+ +++ + L LNL C
Sbjct: 600 RLNLAFCRCITSLAAAFTASGRWMHRLLSLDVSHTNITDAGVQCMQECTDLRYLNL---C 656
Query: 408 NLTD-KTLELISGLTGLVSLNVSNSRITSAGLRHLKP-LKNLRSLTLESC 455
++ + L + ++ L LN+ +R+T H P +NLR L+L C
Sbjct: 657 GCSELRRLSWLQKMSSLRWLNLGGTRVTDEETNHYLPCARNLRFLSLSDC 706
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 129/303 (42%), Gaps = 57/303 (18%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNN 117
L S+ L G VTD+ L+ L C+ L+ L + C QI+D L +LRG L L R
Sbjct: 479 LQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPR-T 535
Query: 118 AITAQGMKAFAGLINLVKLDLE-----------------RCTRIHGGLVNLKG------L 154
++ M+ LV+L L+ R + LV +G +
Sbjct: 536 LLSNANMQHIGLCDKLVELHLQSLRQLTDIGVLKDLTALRVLNLSDNLVTDEGCSALHCM 595
Query: 155 MKLESLNIKWCNCITD-SDMKPLSG--LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L+ LN+ +C CIT + SG + L SL +S + +TD+G+ ++ L LNL
Sbjct: 596 PSLQRLNLAFCRCITSLAAAFTASGRWMHRLLSLDVSHTNITDAGVQCMQECTDLRYLNL 655
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
GC S L L +L K+ SL+ LNLG +TDE H
Sbjct: 656 CGC----------SELRRLSWLQ---------------KMSSLRWLNLGGTRVTDEETNH 690
Query: 272 -LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L NL L+L C G L L LE ++L T ++D L L L+ L+
Sbjct: 691 YLPCARNLRFLSLSDCS-GVRSLSFAVRLHQLEYLSLESTSVADSELPCLCHCRKLRYLS 749
Query: 331 LDA 333
L++
Sbjct: 750 LES 752
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 142/300 (47%), Gaps = 14/300 (4%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL-GSLF 231
++PL L +L+SL + VTD+ + L G +L L L+ C L L+ L G+L
Sbjct: 470 LEPLRRLQHLQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD-LSFLANLRGTLE 528
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L + R LS+ + L L+L ++TD + LK LT L LNL + D
Sbjct: 529 RLLMPRTLLSNANMQHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTD 586
Query: 291 EGLVNLTGLTNLESINLSF----TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
EG L + +L+ +NL+F T ++ + L SL++ ITD G+ +
Sbjct: 587 EGCSALHCMPSLQRLNLAFCRCITSLAAAFTASGRWMHRLLSLDVSHTNITDAGVQCMQE 646
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQ 405
T L +L+L G ++L+ +LR L + G +TD H + +L L+LS
Sbjct: 647 CTDLRYLNLCGCSELRR-LSWLQKMSSLRWLNLGGTRVTDEETNHYLPCARNLRFLSLS- 704
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+C+ ++L L L L++ ++ + + L L + LR L+LESC V D+ L
Sbjct: 705 DCSGV-RSLSFAVRLHQLEYLSLESTSVADSELPCLCHCRKLRYLSLESC-VDIRDVSPL 762
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 18/191 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSF 113
++L ++LS + VTD G L +LQ L+ FC I+ R + L SL
Sbjct: 572 TALRVLNLSDNLVTDEGCSALHCMPSLQRLNLAFCRCITSLAAAFTASGRWMHRLLSLDV 631
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----IT 169
N IT G++ +L L+L C+ L L L K+ SL +W N +T
Sbjct: 632 SHTN-ITDAGVQCMQECTDLRYLNLCGCSE----LRRLSWLQKMSSL--RWLNLGGTRVT 684
Query: 170 DSDM-KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + L NL+ L +S CS V +++ L +L L+LE V + L L
Sbjct: 685 DEETNHYLPCARNLRFLSLSDCSGV--RSLSFAVRLHQLEYLSLESTSVADSELPCLCHC 742
Query: 228 GSLFYLNLNRC 238
L YL+L C
Sbjct: 743 RKLRYLSLESC 753
>gi|427793023|gb|JAA61963.1| Putative f-box and leucine-rich repeat protein 14a, partial
[Rhipicephalus pulchellus]
Length = 372
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 157/303 (51%), Gaps = 24/303 (7%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
++ NL+SL+ C ++D L H ++ + +LT L+ IT + A L L
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIAQHLQGL 109
Query: 134 VKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLK 183
+LDL CT + ++L GL L SLN++ C ++D + L+G+ L+
Sbjct: 110 ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGTLRLE 169
Query: 184 SLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-Q 239
SL + C K+TD + ++ GLQ L LNL C VT A L + + L LNL C
Sbjct: 170 SLCLQDCQKLTDDALRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDN 229
Query: 240 LSDDGCEKFSKIGS-LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNL 296
+SD G ++ GS + L++ F +++ D+ L+H +GL L SL+L++C + D+G+ +
Sbjct: 230 ISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRV 289
Query: 297 T-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLTH 352
L +L++++L G ++D L +A L L+ ++L +IT GL L L L
Sbjct: 290 ARSLGDLQTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLEKLMQLPNLGV 349
Query: 353 LDL 355
L+L
Sbjct: 350 LNL 352
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 144/292 (49%), Gaps = 37/292 (12%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDF 88
+L +L L + D + IA L +DL G +DVT++GL HL NL+SL+
Sbjct: 82 SLTELNLSMCKQITDNSLGRIAQHLQGLERLDLGGCTDVTNTGL-HLIAWGLHNLRSLNL 140
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
C +SD G+ HL G++ N+AI G + L L L+ C ++
Sbjct: 141 RSCRGVSDPGISHLAGINP--------NSAI---------GTLRLESLCLQDCQKLTDDA 183
Query: 149 VNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
+ GL L SLN+ +C +TD+ +K + + L+ L + SC ++D G+AYL +G
Sbjct: 184 LRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDNISDLGLAYLAEGGS 243
Query: 205 KLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG- 260
+++ L++ C L + L L L+LN C +SDDG + ++ +G L+ L+LG
Sbjct: 244 RISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVARSLGDLQTLHLGQ 303
Query: 261 FNEITDECLV----HLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINL 307
+TD+ L HLK L ++L C I GL L L NL +NL
Sbjct: 304 CGRVTDKGLSLIADHLK---QLRCIDLYGCTKITTVGLEKLMQLPNLGVLNL 352
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 161/319 (50%), Gaps = 33/319 (10%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
++G+ LESLN+ C +TD+ + + + +L L +S C ++TD+ + + + LQ L
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIAQHLQGL 109
Query: 207 TLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE 263
L+L GC VT L ++ L +L LNL C+ +SD G + I +
Sbjct: 110 ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAI------ 163
Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKL 320
G LESL L C + D+ L ++ GL +L S+NLSF ++D L+
Sbjct: 164 ----------GTLRLESLCLQDCQKLTDDALRFISIGLQDLRSLNLSFCASVTDAGLKHA 213
Query: 321 AGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYL-RNFKNLRS 376
A ++ L+ LNL + I+D GLA L + ++ LD+ F ++ D G + + LRS
Sbjct: 214 ARMARLRELNLRSCDNISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLHASQGLFQLRS 273
Query: 377 LEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRI 433
L + ++D G+ + + L L L+L Q +TDK L LI+ L L +++ ++I
Sbjct: 274 LSLNACPVSDDGIGRVARSLGDLQTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKI 333
Query: 434 TSAGLRHLKPLKNLRSLTL 452
T+ GL L L NL L L
Sbjct: 334 TTVGLEKLMQLPNLGVLNL 352
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 144/322 (44%), Gaps = 72/322 (22%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL-QISCSKVTDSGI--AYLKGLQKLTL 208
+G+ +++ L++K S + G+ NL+SL I C +TD+ + A+++ + LT
Sbjct: 32 RGIRRVQVLSLK------RSLRDVIQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTE 85
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
LNL C + +L R G E+ G V N G + I
Sbjct: 86 LNLSMCK-------------QITDNSLGRIAQHLQGLERLDLGGCTDVTNTGLHLIA--- 129
Query: 269 LVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
GL NL SLNL SC G+ D G+ +L G+ +I G+LR L+
Sbjct: 130 ----WGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAI---------GTLR-------LE 169
Query: 328 SLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
SL L D +++TD L R G LR+ +L C +TD
Sbjct: 170 SLCLQDCQKLTDDAL-----------------RFISIGLQDLRSL----NLSFCAS-VTD 207
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KP 443
AG+KH ++ L LNL N++D L L G + + +L+VS ++ GL H +
Sbjct: 208 AGLKHAARMARLRELNLRSCDNISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLHASQG 267
Query: 444 LKNLRSLTLESCKVTANDIKRL 465
L LRSL+L +C V+ + I R+
Sbjct: 268 LFQLRSLSLNACPVSDDGIGRV 289
>gi|32477277|ref|NP_870271.1| G protein-coupled receptor LGR4 [Rhodopirellula baltica SH 1]
gi|32447828|emb|CAD77346.1| probable G protein-coupled receptor LGR4 [Rhodopirellula baltica SH
1]
Length = 341
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 108/249 (43%), Gaps = 27/249 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L ++L PVT L S+S L L LNL +++ + E SK+
Sbjct: 167 LQDVSLMKSPVTDKTLTSISTLPKLTKLNLRGTKITGEAFEPISKLP------------- 213
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
LESL L G EG+ + + LE INL T I + SL+ G +S
Sbjct: 214 ------------LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 326 LKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L LN+D IT+ + + SL L L L ++ L+ + L +L + GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321
Query: 385 TDAGVKHIK 393
+ K ++
Sbjct: 322 EEEPAKELE 330
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 121/273 (44%), Gaps = 26/273 (9%)
Query: 230 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+ ++L SD DG K S ++ L + +D ++ L L NL+ L +
Sbjct: 69 VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
D +++GL L ++ T ++D LA L+ L+ ++L +TD L ++++L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMKSPVTDKTLTSISTL 188
Query: 348 TGLTHLDLFGARI--------------------TDSGAAYLRNFKNLRSLEICGGGLT-- 385
LT L+L G +I TD G + N+ LE LT
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGPEGMPAIANIEGLEKINLWLTKI 248
Query: 386 -DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
+ +K + +SLT+LN+ +T++ + +I L L L++ + ++ L LKPL
Sbjct: 249 DNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPL 308
Query: 445 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
+ L +L + + + K L++ PNL F
Sbjct: 309 QELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 10/165 (6%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+ G+S+L+ V L S VTD L + L L+ +I+ E +
Sbjct: 153 VTDDGASVLAELNELQDVSLMKSPVTDKTLTSISTLPKLTKLNLR-GTKITGEAFEPISK 211
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL + +GM A A + L K++L + L +G L LN+
Sbjct: 212 LP-LESLELAETD-FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDN 269
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
C IT+ + + L +LK L + + V+ + LK LQ+L L
Sbjct: 270 CPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETL 314
>gi|290971703|ref|XP_002668623.1| predicted protein [Naegleria gruberi]
gi|284082100|gb|EFC35879.1| predicted protein [Naegleria gruberi]
Length = 295
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
++ + L S+N+S GI D + ++ + L SL++ A QI D G L+ + LT LD+
Sbjct: 128 ISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDI 187
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
I D GA YL K L SL I G D G K+I ++ LT L++S + + ++
Sbjct: 188 SANLIGDEGAKYLSEMKQLISLNI-GKNEIDEGAKYISEMKQLTSLDISY-TQVDVEGVK 245
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
IS + L SLN+ +RI G++ + +K L+SL +
Sbjct: 246 FISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDI 282
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 1/169 (0%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L LN++ + D+ + S++ L L++ N+I DE +L + L SL++
Sbjct: 128 ISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDI 187
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+ IGDEG L+ + L S+N+ I +G+ + ++ + L SL++ Q+ G+
Sbjct: 188 SANLIGDEGAKYLSEMKQLISLNIGKNEIDEGA-KYISEMKQLTSLDISYTQVDVEGVKF 246
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
++ + LT L++ G RI G ++ K L+SL+I + G K I
Sbjct: 247 ISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 98/211 (46%), Gaps = 27/211 (12%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+ + + + DS + K +S + L SL IS + + D ++ +++LT L++ +
Sbjct: 110 VNVTYSDWLLDSFEEAKFISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIG 169
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
LS + L L+++ + D+G + S++ L LN+G NEI
Sbjct: 170 DEGAKYLSEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGKNEI------------- 216
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
DEG ++ + L S+++S+T + ++ ++ + L SLN+ +I
Sbjct: 217 ------------DEGAKYISEMKQLTSLDISYTQVDVEGVKFISEMRQLTSLNICGNRIG 264
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
G+ ++ + L LD+ RI GA ++
Sbjct: 265 IEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 7/159 (4%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D+ I S+ L S+D+S + + D G +L + L SLD + + I D G ++L
Sbjct: 143 GIGDEEAKFI-SEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDISANL-IGDEGAKYL 200
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ L SL+ +N +G K + + L LD+ G+ + + +L SLNI
Sbjct: 201 SEMKQLISLNIGKNE--IDEGAKYISEMKQLTSLDISYTQVDVEGVKFISEMRQLTSLNI 258
Query: 163 KWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
C N I +K +S + LKSL IS +++ G ++
Sbjct: 259 --CGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L+S+++SG+ + D + + L SLD + QI D G ++L + LTSL
Sbjct: 129 SEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDIS-ANQIGDEGAKYLSEMKQLTSLDI 187
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L+ L++ + I G + + +L SL+I + + +
Sbjct: 188 SA-NLIGDEGAKYLSEMKQLISLNIGK-NEIDEGAKYISEMKQLTSLDISYTQVDVEG-V 244
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K +S + L SL I +++ G+ ++ +++L L++
Sbjct: 245 KFISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDI 282
>gi|332661885|ref|YP_004451355.1| small GTP-binding protein [Haliscomenobacter hydrossis DSM 1100]
gi|332337382|gb|AEE54482.1| small GTP-binding protein [Haliscomenobacter hydrossis DSM 1100]
Length = 1141
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 160/312 (51%), Gaps = 28/312 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q+SD L LS L++LSF + + T + ++ + R T L +L+
Sbjct: 191 QVSD-----LDALSALSNLSF-LDLSFTQVSDLSGLSTLSNLSSLNLRDT-YSSDLRSLR 243
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L+ L L + SD+ L+ L NL SL +S ++V+D ++ L L L+ L+L
Sbjct: 244 PLINLSDLKLSSTEV---SDLSVLAHLHNLSSLHLSYTQVSD--LSALSALSNLSFLDLS 298
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
V+ L +LSAL +L +LNL+ Q+SD + +L +++L E+TD L L
Sbjct: 299 DTQVSD--LSALSALYNLSFLNLSNTQISD--LSALRHLLNLSIIDLSSTELTD--LTTL 352
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+ L NL S+NL+ D L L+ L+NL + LS T SD L L+ L +L SLNL
Sbjct: 353 RHLQNLNSINLNKTHASD--LSALSNLSNLSELYLSDTQASD--LSALSALFNLNSLNLS 408
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
Q+ +GL+AL +L L+ LDL + D L N +NL SL++ + D + +
Sbjct: 409 YTQV--SGLSALANLQNLSSLDLGDTEVFDLSP--LANLQNLSSLDLSDTEVVD--LSPM 462
Query: 393 KDLSSLTLLNLS 404
+LS L LNLS
Sbjct: 463 INLSKLKYLNLS 474
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 166/351 (47%), Gaps = 62/351 (17%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ + LI L ++L R TR+ N +T L L+NL
Sbjct: 129 LYPLSNLIYLKHINLSR-TRL--------------------PNLVT------LGHLSNLS 161
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L +S ++VTD L +L + LD+LSAL +L +L+L+ Q+SD
Sbjct: 162 FLDLSYTQVTDLS----DLSTLSNLNSLNLSDTQVSDLDALSALSNLSFLDLSFTQVSDL 217
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
S L ++ L L+ L NL L L S + D L L L NL
Sbjct: 218 SGLSTLSNLSSLNLRDTYS----SDLRSLRPLINLSDLKLSSTEVSD--LSVLAHLHNLS 271
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
S++LS+T +SD L L+ LS+L L+L Q++D L+AL++L L+ L+L +I+D
Sbjct: 272 SLHLSYTQVSD--LSALSALSNLSFLDLSDTQVSD--LSALSALYNLSFLNLSNTQISDL 327
Query: 364 GAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTL-----LNLSQNCNLTD------ 411
A LR+ NL +++ LTD ++H+++L+S+ L +LS NL++
Sbjct: 328 SA--LRHLLNLSIIDLSSTELTDLTTLRHLQNLNSINLNKTHASDLSALSNLSNLSELYL 385
Query: 412 -----KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L +S L L SLN+S +++ +GL L L+NL SL L +V
Sbjct: 386 SDTQASDLSALSALFNLNSLNLSYTQV--SGLSALANLQNLSSLDLGDTEV 434
>gi|401420706|ref|XP_003874842.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491078|emb|CBZ26343.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1207
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 141/292 (48%), Gaps = 37/292 (12%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
SG+ L L++L L++ P+ L +L+ SL + L+RC+ E ++ L
Sbjct: 421 SGVRSLGSLKQLRCLHILHTPLHETFLQALNTCSSLECIILHRCR-GVRSLEPLRRLEHL 479
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGL--------TNLES 304
+ L+L +TD L+ L G T+L L LD C I D L NL G T L +
Sbjct: 480 QSLSLHGLSVTDTDLLSLAGCTHLRQLVLDECRQITDLSFLANLRGTLERLLMPRTLLSN 539
Query: 305 INLSFTGISDG-------SLRKLAG------LSSLKSLNLDARQITDTGLAALTSLTGLT 351
+N+ G+ D SLR+L L++L+ LNL +TD G +AL L L
Sbjct: 540 VNMQHIGLCDKLVELHLQSLRQLTDIGMLKDLTALRVLNLSDNLVTDEGCSALHCLPSLQ 599
Query: 352 HLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L+L R IT AA+ R L SL++ +TD GV+ +++ + L LNL C
Sbjct: 600 RLNLASCRCITSLAAAFTASGRWMHRLLSLDLSHTNITDVGVQFVQECTDLRYLNL-YGC 658
Query: 408 NLTDKTLELISGLTGLVS---LNVSNSRITSAGLRHLKP-LKNLRSLTLESC 455
+ L L+ L ++S LN+ +R+T+ +H P +NLR L+L C
Sbjct: 659 ----RELRLLPWLQKMISLRWLNLGGTRVTNEETKHYLPCARNLRFLSLSGC 706
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 141/300 (47%), Gaps = 14/300 (4%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL-GSLF 231
++PL L +L+SL + VTD+ + L G L L L+ C L L+ L G+L
Sbjct: 470 LEPLRRLEHLQSLSLHGLSVTDTDLLSLAGCTHLRQLVLDECRQITD-LSFLANLRGTLE 528
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L + R LS+ + L L+L ++TD + LK LT L LNL + D
Sbjct: 529 RLLMPRTLLSNVNMQHIGLCDKLVELHLQSLRQLTD--IGMLKDLTALRVLNLSDNLVTD 586
Query: 291 EGLVNLTGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
EG L L +L+ +NL+ T ++ + L SL+L ITD G+ +
Sbjct: 587 EGCSALHCLPSLQRLNLASCRCITSLAAAFTASGRWMHRLLSLDLSHTNITDVGVQFVQE 646
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQ 405
T L +L+L+G R +L+ +LR L + G +T+ KH + +L L+LS
Sbjct: 647 CTDLRYLNLYGCRELRL-LPWLQKMISLRWLNLGGTRVTNEETKHYLPCARNLRFLSLS- 704
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
C+ + + L L L LN+ ++ + + L L + LR L+LESC V D+ L
Sbjct: 705 GCS-SVRLLSFAVKLHHLEYLNLESTSVADSELSCLCHCRKLRYLSLESC-VDIRDVSPL 762
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 139/308 (45%), Gaps = 47/308 (15%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L G VTD+ L+ L C++L+ L + C QI+D LSF N
Sbjct: 479 LQSLSLHGLSVTDTDLLSLAGCTHLRQLVLDECRQITD--------------LSFLANLR 524
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T + + L++ V + H GL + KL L+++ +TD M L
Sbjct: 525 GTLERLLMPRTLLSNVNMQ-------HIGLCD-----KLVELHLQSLRQLTDIGM--LKD 570
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGSL 230
LT L+ L +S + VTD G + L L L LNL C C+ SL+A + L
Sbjct: 571 LTALRVLNLSDNLVTDEGCSALHCLPSLQRLNLASC----RCITSLAAAFTASGRWMHRL 626
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L+L+ ++D G + + L+ LNL G E+ L L+ + +L LNL +
Sbjct: 627 LSLDLSHTNITDVGVQFVQECTDLRYLNLYGCREL--RLLPWLQKMISLRWLNLGGTRVT 684
Query: 290 DEGLVN-LTGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSL 347
+E + L NL ++LS G S L A L L+ LNL++ + D+ L+ L
Sbjct: 685 NEETKHYLPCARNLRFLSLS--GCSSVRLLSFAVKLHHLEYLNLESTSVADSELSCLCHC 742
Query: 348 TGLTHLDL 355
L +L L
Sbjct: 743 RKLRYLSL 750
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
G + L+ L++ + + L L ++LE + L C G L L L +L+
Sbjct: 422 GVRSLGSLKQLRCLHILHTPLHETFLQALNTCSSLECIILHRCR-GVRSLEPLRRLEHLQ 480
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITD 362
S++L ++D L LAG + L+ L LD RQITD L+ L +L G
Sbjct: 481 SLSLHGLSVTDTDLLSLAGCTHLRQLVLDECRQITD--LSFLANLRGT------------ 526
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
L R+L L++ ++HI L L+L LTD + ++ LT
Sbjct: 527 -----LERLLMPRTL------LSNVNMQHIGLCDKLVELHLQSLRQLTD--IGMLKDLTA 573
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
L LN+S++ +T G L L +L+ L L SC+
Sbjct: 574 LRVLNLSDNLVTDEGCSALHCLPSLQRLNLASCR 607
>gi|48096980|ref|XP_393659.1| PREDICTED: f-box/LRR-repeat protein 14 [Apis mellifera]
gi|380017700|ref|XP_003692785.1| PREDICTED: F-box/LRR-repeat protein 14-like [Apis florea]
Length = 481
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 137/256 (53%), Gaps = 28/256 (10%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T+ GL+ + + L+ LD C Q+SD G+ HL G++ +A
Sbjct: 242 NITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------EA 284
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G + L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 285 AGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRE 344
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQL 240
L + SC V+D G+AYL +G +++ L++ C A + L +L L+L+ CQ+
Sbjct: 345 LNLRSCDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQI 404
Query: 241 SDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNL 296
SD+G K +K + L+ LN+G + +TD+ L + + + +L+ ++L C I GL +
Sbjct: 405 SDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERI 464
Query: 297 TGLTNLESINLSFTGI 312
L L ++NL +
Sbjct: 465 MKLPQLSTLNLGLWHV 480
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 162/330 (49%), Gaps = 55/330 (16%)
Query: 151 LKGLMKLESLNIKWCNCITDSDM--KPLSGLTNLKSLQIS-CSKVTDSG----IAYLKGL 203
LKG+ LE+LN+ C ITD+ + T L L +S C +V+D + YLK L
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDISLGRIVQYLKNL 232
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG--CEKFSKIGSLKVLNL-G 260
+ L L GC C +++ G C ++ + LK L+L
Sbjct: 233 EH---LELGGC-----------------------CNITNGGLLCIAWN-LKKLKRLDLRS 265
Query: 261 FNEITDECLVHLKGLTN--------LESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF- 309
+++D + HL G+ LE L+L C + DE L +++ GLT L+SINLSF
Sbjct: 266 CWQVSDLGIAHLAGVNREAAGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFC 325
Query: 310 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAA 366
I+D L+ LA +SSL+ LNL + ++D G+A L + ++ LD+ F +I D
Sbjct: 326 VCITDSGLKHLAKMSSLRELNLRSCDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALV 385
Query: 367 YL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGL 423
++ + NL+ L + ++D G+ K K L L LN+ Q LTDK L I+ + L
Sbjct: 386 HISQGLFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHL 445
Query: 424 VSLNVSN-SRITSAGLRHLKPLKNLRSLTL 452
+++ +RI++ GL + L L +L L
Sbjct: 446 KCIDLYGCTRISTNGLERIMKLPQLSTLNL 475
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 159/325 (48%), Gaps = 68/325 (20%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGL------EH----------------------LRGLSNL 108
LK NL++L+ + C I+D GL E+ ++ L NL
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDISLGRIVQYLKNL 232
Query: 109 TSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLE 158
L IT G+ A L L +LDL C ++ G+ +L G+ + LE
Sbjct: 233 EHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNLALE 292
Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+++ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 293 HLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC-- 350
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KG 274
D++S +G + L++ G S+I SL V F ++I D+ LVH+ +G
Sbjct: 351 -----DNVSDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQG 390
Query: 275 LTNLESLNLDSCGIGDEGLVNLTG-LTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNL 331
L NL+ L+L +C I DEG+ + L +LE++N+ + ++D L +A + LK ++L
Sbjct: 391 LFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDL 450
Query: 332 DA-RQITDTGLAALTSLTGLTHLDL 355
+I+ GL + L L+ L+L
Sbjct: 451 YGCTRISTNGLERIMKLPQLSTLNL 475
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 120/247 (48%), Gaps = 39/247 (15%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + + G +L LS D ++D L H+ +
Sbjct: 263 LRSCWQVSDLGIAHLAGVNRE------AAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 316
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+S++ +FC+ I+D GL+HL +S+L L+ R + ++ GM A
Sbjct: 317 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNVSDIGMAYLA-------------- 362
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
+G ++ SL++ +C+ I D + +S GL NLK L +S +++D GI +
Sbjct: 363 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 413
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVL 257
K L L LN+ C +T L +++ ++ L ++L C ++S +G E+ K+ L L
Sbjct: 414 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 473
Query: 258 NLGFNEI 264
NLG +
Sbjct: 474 NLGLWHV 480
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 52/243 (21%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNL--TGLTNLESINLSF-TGISDGSLRKLA------ 321
LKG+ NLE+LNL C I D GL+N T L +NLS +SD SL ++
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDISLGRIVQYLKNL 232
Query: 322 ---------------------GLSSLKSLNLDA-RQITDTGLAALTSLT--------GLT 351
L LK L+L + Q++D G+A L + L
Sbjct: 233 EHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNLALE 292
Query: 352 HLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
HL L R++D ++ L+S+ +C +TD+G+KH+ +SSL LNL
Sbjct: 293 HLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLRELNLRS 349
Query: 406 NCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G + + SL+VS +I L H+ + L NL+ L+L +C+++ I
Sbjct: 350 CDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGI 409
Query: 463 KRL 465
++
Sbjct: 410 CKI 412
>gi|417302467|ref|ZP_12089567.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
gi|327541207|gb|EGF27751.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
Length = 341
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 108/249 (43%), Gaps = 27/249 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L ++L PVT L S+S L L LNL +++ + E SK+
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLP------------- 213
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
LESL L G EG+ + + LE INL T I + SL+ G +S
Sbjct: 214 ------------LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 326 LKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L LN+D IT+ + + SL L L L ++ L+ + L +L + GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321
Query: 385 TDAGVKHIK 393
+ K ++
Sbjct: 322 EEEPAKELE 330
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 26/273 (9%)
Query: 230 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+ ++L SD DG K S ++ L + +D ++ L L NL+ L +
Sbjct: 69 VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
D +++GL L ++ T ++D LA L+ L+ ++L +TD LA++++L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188
Query: 348 TGLTHLDLFGARI--------------------TDSGAAYLRNFKNLRSLEICGGGLT-- 385
LT L+L G +I TD G + N+ LE LT
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGPEGMPAIANIEGLEKINLWLTKI 248
Query: 386 -DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
+ +K + +SLT+LN+ +T++ + +I L L L++ + ++ L LKPL
Sbjct: 249 DNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKPL 308
Query: 445 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
+ L +L + + + K L++ PNL F
Sbjct: 309 QELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 10/165 (6%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+ G+S+L+ V L S VTD L + L L+ +I+ E +
Sbjct: 153 VTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISK 211
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL + +GM A A + L K++L + L +G L LN+
Sbjct: 212 LP-LESLELAETD-FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDN 269
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
C IT+ + + L +LK L + + V+ + LK LQ+L L
Sbjct: 270 CPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKPLQELETL 314
>gi|300693896|ref|YP_003749869.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299075933|emb|CBJ35242.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum PSI07]
Length = 1002
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 172/372 (46%), Gaps = 11/372 (2%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT--RIHG-GLVNLKGLMKLESLNI 162
S L SLSF N +T +KA + LDL CT + G GL L G KLESL++
Sbjct: 553 SALESLSFHGN--LTIADLKALPPSVR--HLDLSGCTGTAVSGAGLAYLAG-RKLESLDL 607
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
I D + L+ T+L SL +S ++++D+G A LT LNL G ++ A +
Sbjct: 608 S-DTPIGDRGAQLLASSTSLTSLNLSGNEISDAGAAAFADNTSLTSLNLRGNHISDAGAE 666
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L L L+++ + + G + + SL LNL I DE + L T L SL+
Sbjct: 667 ALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCSTWIEDEGVEALASNTVLRSLD 726
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+ G + L L S+ + +++ ++LA + SL +L L + I D G+
Sbjct: 727 ISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTALELSSNLIDDAGVQ 786
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
A+ L LDL I G L + L SL++ G D G + SLTLL
Sbjct: 787 AIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDVSCIGCGDRGGLVLSKSRSLTLLK 846
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
L N + + +++++ L+SL++S + I R L L SL SC + +
Sbjct: 847 LGSN-GIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRLASLNASSCGLDDAAV 905
Query: 463 KRL-QSRDLPNL 473
L +SR L +L
Sbjct: 906 SALAESRSLTSL 917
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 172/379 (45%), Gaps = 8/379 (2%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG + V+ +GL +L L+SLD + I D G + L ++LTSL+
Sbjct: 575 SVRHLDLSGCTGTAVSGAGLAYLAG-RKLESLDLSDT-PIGDRGAQLLASSTSLTSLNLS 632
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I+ G AFA +L L+L G L L SL++ N I ++ ++
Sbjct: 633 -GNEISDAGAAAFADNTSLTSLNLRGNHISDAGAEALGRNTVLTSLDVS-ANPIGNTGVQ 690
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ +L SL + + + D G+ L L L++ A L+ +L L
Sbjct: 691 ALASSRSLTSLNLCSTWIEDEGVEALASNTVLRSLDISHNRFGAQFAAELAQNRTLASLK 750
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
N C L+++ ++ + I SL L L N I D + + +L SL+L IG GL
Sbjct: 751 ANHCSLTNNVAQQLASIRSLTALELSSNLIDDAGVQAIVRNASLRSLDLSQNPIGLGGLH 810
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L L S+++S G D L+ SL L L + I G+ L + L LD
Sbjct: 811 ALALSRTLTSLDVSCIGCGDRGGLVLSKSRSLTLLKLGSNGIASEGVQILAANRSLISLD 870
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L G I A L L SL GL DA V + + SLT L++S+N L
Sbjct: 871 LSGNTIDVVAARALAKNPRLASLNASSCGLDDAAVSALAESRSLTSLDVSKN-RLFSPGA 929
Query: 415 ELISGLTGLVSLNVSNSRI 433
++G L SLN+S++RI
Sbjct: 930 RALAGNRVLTSLNISHNRI 948
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 173/380 (45%), Gaps = 27/380 (7%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L P + D+ ++AS +SL S++LSG++++D+G D ++L SL+
Sbjct: 602 LESLDLSDTP-IGDRGAQLLASS-TSLTSLNLSGNEISDAGAAAFADNTSLTSLNLRGN- 658
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
ISD G E L + LTSL N I G++A A +L L+L G+ L
Sbjct: 659 HISDAGAEALGRNTVLTSLDVSAN-PIGNTGVQALASSRSLTSLNLCSTWIEDEGVEALA 717
Query: 153 GLMKLESLNI----------------------KWCNC-ITDSDMKPLSGLTNLKSLQISC 189
L SL+I K +C +T++ + L+ + +L +L++S
Sbjct: 718 SNTVLRSLDISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTALELSS 777
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+ + D+G+ + L L+L P+ L +L+ +L L+++ D G S
Sbjct: 778 NLIDDAGVQAIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDVSCIGCGDRGGLVLS 837
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
K SL +L LG N I E + L +L SL+L I L L S+N S
Sbjct: 838 KSRSLTLLKLGSNGIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRLASLNASS 897
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
G+ D ++ LA SL SL++ ++ G AL LT L++ RI GAA L
Sbjct: 898 CGLDDAAVSALAESRSLTSLDVSKNRLFSPGARALAGNRVLTSLNISHNRIGFHGAAALA 957
Query: 370 NFKNLRSLEICGGGLTDAGV 389
+L L+ G+ +AG
Sbjct: 958 ESTSLTFLDARANGIGEAGA 977
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 123/282 (43%), Gaps = 31/282 (10%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDG-GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
S + H + LQ + + I D L LR NL S+ + N T +KA
Sbjct: 74 SAVYHDPQTAALQRVTH---LSIHDQRALSELRYYPNLESVHLKGN--FTLADLKALPA- 127
Query: 131 INLVKLDLERCT---RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ LDL CT R + L L LESLN+K I D + L+ +LK+L +
Sbjct: 128 -TLLHLDLSECTGSARSSKAIAYLASL-PLESLNVKGAQ-IGDHGARLLAANPSLKTLNM 184
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ + +G A L + L L+L + + +L+A SL L ++ C ++D G E
Sbjct: 185 AIGGIGAAGAANLAESRTLMSLDLTQNKIGDKGVQALAASRSLTNLTVSNCLVTDIGLEA 244
Query: 248 FSKIGSLKVLNLG------------------FNEITDECLVHLKGLTNLESLNLDSCGIG 289
++ +L L+LG N+IT + L +L SL++ G
Sbjct: 245 LARSRTLTSLDLGNLVSATYDEAEQADFDRTANDITVKGTRALVQSPSLTSLSVQGNLCG 304
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
D G++ L L +N++FT + S R LA L SLN+
Sbjct: 305 DAGVLELAKSRTLTHLNVAFTNMGPVSARALARNPVLTSLNV 346
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 114/273 (41%), Gaps = 36/273 (13%)
Query: 199 YLKGLQKLTLLNLEGCPVT------AACLDSLSALGSLFYL--------NLNRCQLSDDG 244
+LKG TL +L+ P T + C S + ++ YL N+ Q+ D G
Sbjct: 112 HLKG--NFTLADLKALPATLLHLDLSECTGSARSSKAIAYLASLPLESLNVKGAQIGDHG 169
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
+ SLK LN+ I +L L SL+L IGD+G+ L +L +
Sbjct: 170 ARLLAANPSLKTLNMAIGGIGAAGAANLAESRTLMSLDLTQNKIGDKGVQALAASRSLTN 229
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNL---------DARQ---------ITDTGLAALTS 346
+ +S ++D L LA +L SL+L +A Q IT G AL
Sbjct: 230 LTVSNCLVTDIGLEALARSRTLTSLDLGNLVSATYDEAEQADFDRTANDITVKGTRALVQ 289
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT L + G D+G L + L L + + + + LT LN+ N
Sbjct: 290 SPSLTSLSVQGNLCGDAGVLELAKSRTLTHLNVAFTNMGPVSARALARNPVLTSLNVRWN 349
Query: 407 CNL-TDKTLELISGLTGLVSLNVSNSRITSAGL 438
++ T+ LEL + L+SL+ ++ I + G+
Sbjct: 350 YDIGTEGALELTKSES-LISLDARDASIGAEGV 381
>gi|383852952|ref|XP_003701989.1| PREDICTED: F-box/LRR-repeat protein 14-like [Megachile rotundata]
Length = 479
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 137/256 (53%), Gaps = 28/256 (10%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T++GL+ + + L+ LD C Q+SD G+ HL G++ +A
Sbjct: 240 NITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------EA 282
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 283 AGGNFALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMSSLRE 342
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQL 240
L + SC ++D G+AYL +G +++ L++ C A + L +L L+L+ CQ+
Sbjct: 343 LNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQI 402
Query: 241 SDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNL 296
SD+G K +K + L+ LN+G + +TD+ L + + + +L+ ++L C I GL +
Sbjct: 403 SDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERI 462
Query: 297 TGLTNLESINLSFTGI 312
L L ++NL +
Sbjct: 463 MKLPQLSTLNLGLWHV 478
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 155/308 (50%), Gaps = 36/308 (11%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
L G+ NL++L +S C +TD+G+ A+ + LT LNL C + +LG +
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDI-----SLGRIVQ 225
Query: 233 LNLNRCQLSDDGCEKFSKIG---------SLKVLNL-GFNEITDECLVHLKGLTN----- 277
N L GC + G LK L+L +++D + HL G+
Sbjct: 226 YLKNLEHLELGGCCNITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGG 285
Query: 278 ---LESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 331
LE L+L C + DE L +++ GLT L+SINLSF I+D ++ LA +SSL+ LNL
Sbjct: 286 NFALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMSSLRELNL 345
Query: 332 DA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+D G+A L + ++ LD+ F +I D ++ + NL+SL + ++D
Sbjct: 346 RSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDE 405
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ K K L L LN+ Q LTDK L I+ + L +++ +RI++ GL + L
Sbjct: 406 GICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKL 465
Query: 445 KNLRSLTL 452
L +L L
Sbjct: 466 PQLSTLNL 473
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 159/325 (48%), Gaps = 68/325 (20%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGL------EH----------------------LRGLSNL 108
L+ NL++L+ + C I+D GL E+ ++ L NL
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDISLGRIVQYLKNL 230
Query: 109 TSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLE 158
L IT G+ A L L +LDL C ++ G+ +L G+ LE
Sbjct: 231 EHLELGGCCNITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNFALE 290
Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+++ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 291 HLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMSSLRELNLRSC-- 348
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KG 274
D++S +G + L++ G S+I SL V F ++I D+ LVH+ +G
Sbjct: 349 -----DNISDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQG 388
Query: 275 LTNLESLNLDSCGIGDEGLVNLTG-LTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNL 331
L NL+SL+L +C I DEG+ + L +LE++N+ + ++D L +A + LK ++L
Sbjct: 389 LFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDL 448
Query: 332 DA-RQITDTGLAALTSLTGLTHLDL 355
+I+ GL + L L+ L+L
Sbjct: 449 YGCTRISTNGLERIMKLPQLSTLNL 473
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 52/243 (21%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNL--TGLTNLESINLSF-TGISDGSLRKLA------ 321
L+G+ NLE+LNL C I D GL+N + L +NLS +SD SL ++
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDISLGRIVQYLKNL 230
Query: 322 ---------------------GLSSLKSLNLDA-RQITDTGLAALTSLT--------GLT 351
L LK L+L + Q++D G+A L + L
Sbjct: 231 EHLELGGCCNITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNFALE 290
Query: 352 HLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
HL L R++D ++ L+S+ +C +TD+GVKH+ +SSL LNL
Sbjct: 291 HLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVC---ITDSGVKHLAKMSSLRELNLRS 347
Query: 406 NCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G + + SL+VS +I L H+ + L NL+SL+L +C+++ I
Sbjct: 348 CDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGI 407
Query: 463 KRL 465
++
Sbjct: 408 CKI 410
>gi|395743765|ref|XP_003777984.1| PREDICTED: F-box/LRR-repeat protein 14-like, partial [Pongo abelii]
Length = 296
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 157/321 (48%), Gaps = 58/321 (18%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNL 211
L +LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL
Sbjct: 14 LRALNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNL 71
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
C LSD G IG L + E
Sbjct: 72 RSCR-----------------------HLSDVG------IGHLAGMTRSAAE-------- 94
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKS 328
G LE L L C + D L +++ GLT L +NLSF G ISD L L+ + SL+S
Sbjct: 95 --GCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRS 152
Query: 329 LNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGG 383
LNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C
Sbjct: 153 LNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCH 211
Query: 384 LTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRH 440
++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL
Sbjct: 212 ISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLER 271
Query: 441 LKPLKNLRSLTLESCKVTAND 461
+ L L+ L L ++T ++
Sbjct: 272 ITQLPCLKVLNLGLWQMTDSE 292
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 169/338 (50%), Gaps = 71/338 (21%)
Query: 73 GLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
GL H +++ +L++L+ + C QI+D L + AQ +K
Sbjct: 2 GLGHAFVQEIGSLRALNLSLCKQITDSSLGRI------------------AQYLKG---- 39
Query: 131 INLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN------- 181
L L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T
Sbjct: 40 --LEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 97
Query: 182 -LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNR 237
L+ L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL
Sbjct: 98 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 157
Query: 238 C-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEG 292
C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G
Sbjct: 158 CDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDG 216
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGL 350
+ + +R++ G L++LN+ +ITD GL + L+ L
Sbjct: 217 INRM--------------------VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQL 253
Query: 351 THLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
T +DL+G RIT G + L+ L + +TD+
Sbjct: 254 TGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 291
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 110 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 169
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 170 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 229
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 230 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 266
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 267 RGLERITQLPCLKVLNLGLWQMTD 290
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 112/236 (47%), Gaps = 41/236 (17%)
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
+IGSL+ LNL +ITD L + + L LE L L C
Sbjct: 8 VQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCS------------------ 49
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------GLTHLDLF 356
N++ TG+ L GL LKSLNL + R ++D G+ L +T GL L L
Sbjct: 50 NITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQ 105
Query: 357 GA-RITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL N++D
Sbjct: 106 DCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCDNISDT 164
Query: 413 -TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
+ L G L L+VS ++ L ++ + L L+SL+L SC ++ + I R+
Sbjct: 165 GIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM 220
>gi|343421695|emb|CCD18730.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 582
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 130/430 (30%), Positives = 197/430 (45%), Gaps = 26/430 (6%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +DLSG+ V D L + NL ++ C +SD + L + +L L +
Sbjct: 129 LRELDLSGTRVQDEVFYELSENPNLTKVNLRQCQGLSD--VSPLADIESLQELDLGLCRS 186
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G++ A L NL L+LE+ L L LE LN+ C + D + PLS
Sbjct: 187 IN-EGVQDLAELPNLRVLNLEKVNVPSDSLFELCKSRSLEKLNLSSCKRLLD--VSPLSE 243
Query: 179 LTNLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L +S CS T G++ L LQ L +LNL VT L LS SL LNL+
Sbjct: 244 IKTLVELDLSLCCSLFT--GVSELGKLQCLRILNLRNTAVTDHSLPGLSESDSLEILNLS 301
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
C+ +I SL L+L + + L L L +L L + I +E L ++
Sbjct: 302 SCR-GLTNVSPLKEIKSLVQLDLSNCPALRDGIGSLVALPFLCTLKLRNTAITNESLRDI 360
Query: 297 TGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+LE ++ S T +SD + ++ L++L LNL G+ A+ SL L LD+
Sbjct: 361 CESESLEELDASSCTALSD--VFHISVLNTLVELNLSFCPNLVKGMEAIASLPFLRALDI 418
Query: 356 FGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DK 412
G IT+ LR +L SL C LTD V ++ +S TLL L C ++ K
Sbjct: 419 SGTPITNHCLRGLRKSNSLETVSLRSC-NNLTD--VFYLSKIS--TLLRLDLGCCISLQK 473
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-----DIKRLQS 467
+ + L L LN+ +R + + L ++L L L SC ++ +I+ L+
Sbjct: 474 GVGTLGKLPRLRILNLEGTRAANDWIIGLSTSRSLAVLILSSCLALSDVSLLANIEPLEE 533
Query: 468 RDLPNLVSFR 477
D+ N VS R
Sbjct: 534 LDISNCVSIR 543
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 147/327 (44%), Gaps = 51/327 (15%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+ GL NL+ L +S ++V D L LT +NL C + + L+ + SL L+L
Sbjct: 123 IGGLKNLRELDLSGTRVQDEVFYELSENPNLTKVNLRQCQGLSD-VSPLADIESLQELDL 181
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGD---- 290
C+ ++G + +++ +L+VLNL + + L L +LE LNL SC + D
Sbjct: 182 GLCRSINEGVQDLAELPNLRVLNLEKVNVPSDSLFELCKSRSLEKLNLSSCKRLLDVSPL 241
Query: 291 ------------------EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
G+ L L L +NL T ++D SL L+ SL+ LNL
Sbjct: 242 SEIKTLVELDLSLCCSLFTGVSELGKLQCLRILNLRNTAVTDHSLPGLSESDSLEILNLS 301
Query: 333 A-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK- 390
+ R +T+ ++ L + L LDL G L L +L++ +T+ ++
Sbjct: 302 SCRGLTN--VSPLKEIKSLVQLDLSNCPALRDGIGSLVALPFLCTLKLRNTAITNESLRD 359
Query: 391 ----------------------HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
HI L++L LNLS NL K +E I+ L L +L++
Sbjct: 360 ICESESLEELDASSCTALSDVFHISVLNTLVELNLSFCPNLV-KGMEAIASLPFLRALDI 418
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESC 455
S + IT+ LR L+ +L +++L SC
Sbjct: 419 SGTPITNHCLRGLRKSNSLETVSLRSC 445
>gi|397630643|gb|EJK69852.1| hypothetical protein THAOC_08850 [Thalassiosira oceanica]
Length = 859
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 145/300 (48%), Gaps = 44/300 (14%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP----LSGLTNLKSLQISCSKVTDSG---IAYLKGL 203
L+ + L S+ + N ITDS+M+ L +T L + CS +TD G I L+ L
Sbjct: 158 LEDIADLHSIEVSLPNSITDSEMEHAILYLQLVTRLNC--VGCSYLTDKGFKLIGRLREL 215
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
Q+L L+ L SL+ LG+L D +K S G L +
Sbjct: 216 QELYFLH-------NKQLTSLTFLGNL------------DRLKKLSVDGMLNSRGKSTPQ 256
Query: 264 ITDECLVHLKG-LTNLESL----NLDSCGIGDEGLVNLTGLTNLESINL---SFTGISDG 315
+TDE L + G + +L L +++ GIG LV+L + LES++L + GI+D
Sbjct: 257 VTDETLGIIAGEMHSLRELIIGVDMEVSGIG---LVHLAEMGRLESLSLERGAGEGITDN 313
Query: 316 SLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLF---GARITDSGAAYLRNF 371
L+ L L L+SL + ++D L L L + L+L + TD GA L
Sbjct: 314 GLKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLELSCVDDSSFTDEGARQLSKL 373
Query: 372 KNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
KNL+ L + G LTD GV ++ +S+L LNL ++TD++LE + L GL L +S+
Sbjct: 374 KNLKELSLVGWERLTDRGVYYLSKISTLECLNLRYCPSITDESLEHLRYLKGLRKLELSD 433
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 24/240 (10%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISD----GGLEHLRGLSNLTSLSFRRNNA--IT 120
S +TD G + LQ L F Q++ G L+ L+ LS L+ R + +T
Sbjct: 199 SYLTDKGFKLIGRLRELQELYFLHNKQLTSLTFLGNLDRLKKLSVDGMLNSRGKSTPQVT 258
Query: 121 AQGMKAFAGLIN-----LVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWC--NCITDSD 172
+ + AG ++ ++ +D+E + G GLV+L + +LESL+++ ITD+
Sbjct: 259 DETLGIIAGEMHSLRELIIGVDME----VSGIGLVHLAEMGRLESLSLERGAGEGITDNG 314
Query: 173 MKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL---EGCPVTAACLDSLSALG 228
+K L L L+SL+I+ C+ ++D + YL+ L ++ L L + T LS L
Sbjct: 315 LKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLELSCVDDSSFTDEGARQLSKLK 374
Query: 229 SLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
+L L+L +L+D G SKI +L+ LNL + ITDE L HL+ L L L L C
Sbjct: 375 NLKELSLVGWERLTDRGVYYLSKISTLECLNLRYCPSITDESLEHLRYLKGLRKLELSDC 434
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 147/335 (43%), Gaps = 101/335 (30%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD--VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
+ D +D+ S+G LS SD +T S L L+D ++L S++ + I+D +EH
Sbjct: 129 MTDNELDIFISKGY------LSRSDKKLTVSYLELLEDIADLHSIEVSLPNSITDSEMEH 182
Query: 102 -----------------------------LRGLS--------NLTSLSF----------- 113
LR L LTSL+F
Sbjct: 183 AILYLQLVTRLNCVGCSYLTDKGFKLIGRLRELQELYFLHNKQLTSLTFLGNLDRLKKLS 242
Query: 114 ---------RRNNAITAQGMKAFAGLIN-----LVKLDLERCTRIHG-GLVNLKGLMKLE 158
+ +T + + AG ++ ++ +D+E + G GLV+L + +LE
Sbjct: 243 VDGMLNSRGKSTPQVTDETLGIIAGEMHSLRELIIGVDME----VSGIGLVHLAEMGRLE 298
Query: 159 SLNIKW--CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
SL+++ ITD+ +K L L L+SL+I+ C+ ++D + YL+ L ++ L L
Sbjct: 299 SLSLERGAGEGITDNGLKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLEL---- 354
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKG 274
+C+D S +D+G + SK+ +LK L+L G+ +TD + +L
Sbjct: 355 ---SCVDDSS--------------FTDEGARQLSKLKNLKELSLVGWERLTDRGVYYLSK 397
Query: 275 LTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS 308
++ LE LNL C I DE L +L L L + LS
Sbjct: 398 ISTLECLNLRYCPSITDESLEHLRYLKGLRKLELS 432
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 28/157 (17%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR--RNNAITAQ 122
+G +TD+GL L L+SL C +SD L +L+ L + L +++ T +
Sbjct: 306 AGEGITDNGLKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLELSCVDDSSFTDE 365
Query: 123 GMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
G + + L NL +L L ER T G+ L + LE LN+++C ITD ++ L
Sbjct: 366 GARQLSKLKNLKELSLVGWERLT--DRGVYYLSKISTLECLNLRYCPSITDESLEHLR-- 421
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
YLKGL+KL L + + P
Sbjct: 422 -------------------YLKGLRKLELSDCDARPA 439
>gi|290972775|ref|XP_002669126.1| predicted protein [Naegleria gruberi]
gi|284082669|gb|EFC36382.1| predicted protein [Naegleria gruberi]
Length = 467
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 183/380 (48%), Gaps = 27/380 (7%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES----- 159
L+ L S+ + NN I M++ A + L+ LD+ C R NL+G+ L S
Sbjct: 63 LTQLKSIVLKFNN-INEYEMESIASMNKLISLDI-GCAR-----TNLEGIKILSSKDNFT 115
Query: 160 -LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYLKGLQKLTLLNLEGCP 215
LNI++ M+ +S +T+L+ L IS + ++ YLK L+KLT L +
Sbjct: 116 ELNIEFSFFDQVPYMEYVSKMTDLRKLDISNNPISLNRAKSANYLKSLEKLTDLTVTYLD 175
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KG 274
+ L S+S L L L++ + +G + + LK L++ N I +E +
Sbjct: 176 MDLEFLKSISNLKFLTSLSIYGNLVGIEGVKIICSMFQLKKLDITLNAIGEEGAKLISNS 235
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L L +L + IGD+G +++ + L +++L + I L + + LKSL L+
Sbjct: 236 LKQLNTLRIGDNQIGDKGAESISSMKTLTALDLEESNIGPQGLEFICQMDQLKSLMLNFN 295
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
I + L + +LT LT + L I + LR++ I L D ++ I +
Sbjct: 296 TIGGSRLP-INALTNLTEISLVLTNIGIEIVKSISLITKLRNVNISDNRLGDECLEIIGN 354
Query: 395 -LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
L +LT L++S+N N+T+ + +S L L LN ++R+ ++HL LK L+SL +
Sbjct: 355 SLFNLTELDISEN-NMTENGTKYLSSLKNLTHLNAEDNRLNDESIQHLCSLKKLKSLYIN 413
Query: 454 SCKV-------TANDIKRLQ 466
+ +V AN +K+L+
Sbjct: 414 NNQVGDEGFALIANSMKQLR 433
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 105/420 (25%), Positives = 186/420 (44%), Gaps = 47/420 (11%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
++ +N+ M+ IAS + L+S+D+ + G+ L N L+ F +
Sbjct: 72 KFNNINEYEMESIASM-NKLISLDIGCARTNLEGIKILSSKDNFTELNIEFSFFDQVPYM 130
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E++ +++L L NN I+ K+ L K L KL
Sbjct: 131 EYVSKMTDLRKLDIS-NNPISLNRAKSANYL---------------------KSLEKLTD 168
Query: 160 LNIKWCNCITDSDMKPLSGLTNLK---SLQISCSKVTDSGIAYLKGLQKLTLLNL----- 211
L + + D D++ L ++NLK SL I + V G+ + + +L L++
Sbjct: 169 LTVTYL----DMDLEFLKSISNLKFLTSLSIYGNLVGIEGVKIICSMFQLKKLDITLNAI 224
Query: 212 --EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
EG + + L L+ L + Q+ D G E S + +L L+L + I + L
Sbjct: 225 GEEGAKLISNSLKQLNTL------RIGDNQIGDKGAESISSMKTLTALDLEESNIGPQGL 278
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+ + L+SL L+ IG L + LTNL I+L T I ++ ++ ++ L+++
Sbjct: 279 EFICQMDQLKSLMLNFNTIGGSRLP-INALTNLTEISLVLTNIGIEIVKSISLITKLRNV 337
Query: 330 NLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
N+ ++ D L + SL LT LD+ +T++G YL + KNL L L D
Sbjct: 338 NISDNRLGDECLEIIGNSLFNLTELDISENNMTENGTKYLSSLKNLTHLNAEDNRLNDES 397
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
++H+ L L L ++ N + D+ LI+ + L ++ N++ T G LK K+L
Sbjct: 398 IQHLCSLKKLKSLYINNN-QVGDEGFALIANSMKQLRLVHAHNNKETEIGRTLLKSRKHL 456
>gi|421897504|ref|ZP_16327872.1| type III effector protein gala5 [Ralstonia solanacearum MolK2]
gi|206588710|emb|CAQ35673.1| type III effector protein gala5 [Ralstonia solanacearum MolK2]
Length = 533
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 156/349 (44%), Gaps = 3/349 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ ++LSG+ + L + L LD + C I L + LT+L+ RN
Sbjct: 166 LVRLNLSGNRIGPVEARLLANHPTLTELDVSRC-GIGPEEARALAASARLTTLNASRN-G 223
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ +G++A L LDL L +L +LN+ N I + L+
Sbjct: 224 VGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNR-NRIDVQGARALAD 282
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L SL I + + D+G+ L +LT LN+E V A + +L+ +L L ++
Sbjct: 283 CKTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAGVGAHGVQALADSKTLTSLRIDNN 342
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D+G + + SL L+ N I L T L +LNL GIGD G
Sbjct: 343 NIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLA 402
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
T L S+++ G+SD +LA +L +L+ I D G AL + LT LD+
Sbjct: 403 NTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSN 462
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
I ++GA L L SL++ + +AGV+ + +L+ L +S NC
Sbjct: 463 EIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSFNC 511
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 167/382 (43%), Gaps = 7/382 (1%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
TD+ L L L+ LD + C I+ G+ HL L L L+ N I + A
Sbjct: 130 TDADLAGLPPT--LKELDLSRCRGGITAAGIAHLSHLP-LVRLNLS-GNRIGPVEARLLA 185
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L +LD+ RC L +L +LN N + ++ L L SL +S
Sbjct: 186 NHPTLTELDVSRCGIGPEEARALAASARLTTLNASR-NGVGGEGVRALVDCKTLTSLDLS 244
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ + D+ L ++LT LN+ + +L+ +L L++ + D G E
Sbjct: 245 ENGLGDAEAQRLGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEAL 304
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
L LN+ + + L L SL +D+ IGDEG L T+L +++
Sbjct: 305 LANAQLTTLNVERAGVGAHGVQALADSKTLTSLRIDNNNIGDEGAKTLAASTSLTTLHSE 364
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
GI + LA + L +LNL I D G A + T L L + ++D+GA L
Sbjct: 365 SNGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRL 424
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
K L +L+ + DAG + + +LT L++S N + + ++ T L SL++
Sbjct: 425 AASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSN-EIGNAGARALAANTRLASLDL 483
Query: 429 SNSRITSAGLRHLKPLKNLRSL 450
N+R+ AG+R L + L SL
Sbjct: 484 RNNRMLEAGVRALLVNRTLSSL 505
>gi|320168280|gb|EFW45179.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 769
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/401 (26%), Positives = 165/401 (41%), Gaps = 31/401 (7%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GLS LT L + N IT AF GL +L +L L + T I
Sbjct: 91 QITGLSANAFAGLSALTLLDLKGNQ-ITTIPENAFTGLASLQQLWLYTNQITSISANA-- 147
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L L + + N + + +GLT L S+Q+ +++T G+ LT L
Sbjct: 148 FAGLSALTQLWM-YSNPLPNITANAFAGLTALNSMQLDRNQLTSIVANAFAGMPALTDLE 206
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L+ +T+ + + L +L YLN+ + ++ F+ + +L L L N IT
Sbjct: 207 LQNNAITSISPSAFAGLTALTYLNMVQNHITGISANSFTGLSALNELYLSQNSITVISSN 266
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL-----------SFTGISD-GSLR 318
GLT L SL L S I T L L S+ L +FT + SLR
Sbjct: 267 AFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQSNSITSISSNAFTNLPALSSLR 326
Query: 319 ------------KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
L +L +L+L +IT + A T+L GLT L L+ +IT A
Sbjct: 327 LKSNSITSISSNAFTNLPALSALDLSDNEITVIPVNAFTNLPGLTDLKLYANKITTIFAN 386
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L SL++ G +T I L++L L L++N +T+ + LT L L
Sbjct: 387 AFSGLSVLDSLDLSGNLITVIPANAIASLTALNFLYLNEN-QITNIPANAFASLTALTGL 445
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ +++ S L L L L +T + +
Sbjct: 446 FLQQNQLASIDANAFAGLTALIDLDLREASITVMPVNAFTA 486
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 153/335 (45%), Gaps = 5/335 (1%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESL 160
G+ LT L + NNAIT+ AFAGL L L++ + I G N GL L L
Sbjct: 196 FAGMPALTDLELQ-NNAITSISPSAFAGLTALTYLNMVQ-NHITGISANSFTGLSALNEL 253
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ N IT +GLT L SL + +++T L L+ L L+ +T+
Sbjct: 254 YLSQ-NSITVISSNAFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQSNSITSIS 312
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
++ + L +L L L ++ F+ + +L L+L NEIT + L L
Sbjct: 313 SNAFTNLPALSSLRLKSNSITSISSNAFTNLPALSALDLSDNEITVIPVNAFTNLPGLTD 372
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L L + I +GL+ L+S++LS I+ +A L++L L L+ QIT+
Sbjct: 373 LKLYANKITTIFANAFSGLSVLDSLDLSGNLITVIPANAIASLTALNFLYLNENQITNIP 432
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
A SLT LT L L ++ A L L++ +T V L++LT
Sbjct: 433 ANAFASLTALTGLFLQQNQLASIDANAFAGLTALIDLDLREASITVMPVNAFTALTALTS 492
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L LS N +T + + + LT L L++S ++ITS
Sbjct: 493 LYLSLN-QITTISANVFASLTALNYLDLSANQITS 526
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 124/281 (44%), Gaps = 4/281 (1%)
Query: 198 AYLKGLQKLTL-LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
A G+ T+ L L P+T+ ++ + L +L L L Q++ F+ + +L +
Sbjct: 49 AVPSGIPATTVTLFLSSNPITSIPANAFATLTALESLRLYNNQITGLSANAFAGLSALTL 108
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316
L+L N+IT GL +L+ L L + I GL+ L + + + + +
Sbjct: 109 LDLKGNQITTIPENAFTGLASLQQLWLYTNQITSISANAFAGLSALTQLWMYSNPLPNIT 168
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
AGL++L S+ LD Q+T A + LT L+L IT + L
Sbjct: 169 ANAFAGLTALNSMQLDRNQLTSIVANAFAGMPALTDLELQNNAITSISPSAFAGLTALTY 228
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L + +T LS+L L LSQN ++T + +GLT L SL + +++ITS
Sbjct: 229 LNMVQNHITGISANSFTGLSALNELYLSQN-SITVISSNAFNGLTALSSLYLPSNQITSI 287
Query: 437 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
L L SL L+S +T+ +LP L S R
Sbjct: 288 SANVFTNLPALSSLRLQSNSITSISSNAF--TNLPALSSLR 326
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 111/269 (41%), Gaps = 3/269 (1%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL+ L+SL + +N IT+ F L L L L+ + L L SL
Sbjct: 268 FNGLTALSSL-YLPSNQITSISANVFTNLPALSSLRLQSNSITSISSNAFTNLPALSSLR 326
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+K + + S + L L +L +S +++T + L LT L L +T
Sbjct: 327 LKSNSITSISSNA-FTNLPALSALDLSDNEITVIPVNAFTNLPGLTDLKLYANKITTIFA 385
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
++ S L L L+L+ ++ + + +L L L N+IT+ LT L L
Sbjct: 386 NAFSGLSVLDSLDLSGNLITVIPANAIASLTALNFLYLNENQITNIPANAFASLTALTGL 445
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
L + GLT L ++L I+ + L++L SL L QIT
Sbjct: 446 FLQQNQLASIDANAFAGLTALIDLDLREASITVMPVNAFTALTALTSLYLSLNQITTISA 505
Query: 342 AALTSLTGLTHLDLFGARITD-SGAAYLR 369
SLT L +LDL +IT +A+ R
Sbjct: 506 NVFASLTALNYLDLSANQITSIEASAFTR 534
>gi|449278816|gb|EMC86555.1| F-box/LRR-repeat protein 13, partial [Columba livia]
Length = 546
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 119/452 (26%), Positives = 201/452 (44%), Gaps = 97/452 (21%)
Query: 24 SLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV------------- 69
S ++ +C LQ+L L + G+ND+ M VI+ +LL ++LS +D+
Sbjct: 76 SFKSIGECRNLQELNLSECQGLNDESMRVISEGCRALLYLNLSYTDITNGTLRLLSSSFH 135
Query: 70 -------------TDSGLIHL---KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLS 112
TD GL++L K C L LD + CIQIS G ++ G S + L
Sbjct: 136 NLQYLSLAHCRKFTDKGLLYLGSGKGCHKLIYLDLSGCIQISVDGFRNIANGCSRIQDLL 195
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRI---------HGGLVNLKGLM--KLESLN 161
+ A+T ++A +E+C +I H K L KL +
Sbjct: 196 INKMPALTDGCIQAL----------VEKCRQITSVVFLDSPHLSDTTFKALAKCKLVKVG 245
Query: 162 IKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
I+ N ITD K +S ++ + ++ C ++TD+G++ + L+ + +LN+ C
Sbjct: 246 IEGNNQITDLSFKLMSKCCPYIRHIHVADCHQITDTGLSMISPLKHILVLNVADCI---- 301
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVLNL-GFNEITDECLVHL-KG 274
++SD+G F S L+ LNL +TD + + +
Sbjct: 302 -------------------RISDEGVRPFVQGSSGAKLRELNLTNCIRVTDASVTEIAQR 342
Query: 275 LTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-D 332
L LNL C + D G+ L +++L S+++S T ISD LR L +K L+L +
Sbjct: 343 CHELTYLNLRYCENVTDAGIEALGNISSLISLDVSGTSISDMGLRALGRQGKIKELSLSE 402
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARI------TDSGA-AYLRNFKNLRSLEICG-GGL 384
+ I+DTG+ G HL+ G R+ TD A + + L ++ I G +
Sbjct: 403 CKNISDTGIQEFCK--GTKHLE--GCRVSSCPQLTDEAVRAMAFHCRRLTAVSIAGCPKM 458
Query: 385 TDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 415
TD+ ++++ L L++S +LTDK L+
Sbjct: 459 TDSCIQYLAAACHYLHFLDVSGCIHLTDKALK 490
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 173/374 (46%), Gaps = 61/374 (16%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCI 168
L+ R ++ K+ NL +L+L C ++ + + +G L LN+ + + I
Sbjct: 64 LNLRGCYSLRWPSFKSIGECRNLQELNLSECQGLNDESMRVISEGCRALLYLNLSYTD-I 122
Query: 169 TDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNLEGCPVTAACLDS 223
T+ ++ LS NL+ L ++ C K TD G+ YL KG KL L+L GC
Sbjct: 123 TNGTLRLLSSSFHNLQYLSLAHCRKFTDKGLLYLGSGKGCHKLIYLDLSGCI-------- 174
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI---TDECLVHL----KGLT 276
Q+S DG + G ++ +L N++ TD C+ L + +T
Sbjct: 175 ---------------QISVDGFRNIAN-GCSRIQDLLINKMPALTDGCIQALVEKCRQIT 218
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG---ISDGSLRKLAGLSS-LKSLNL- 331
++ + LDS + D L + + + G I+D S + ++ ++ +++
Sbjct: 219 SV--VFLDSPHLSD---TTFKALAKCKLVKVGIEGNNQITDLSFKLMSKCCPYIRHIHVA 273
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNF------KNLRSLEICGG-G 383
D QITDTGL+ ++ L + L++ RI+D G +R F LR L +
Sbjct: 274 DCHQITDTGLSMISPLKHILVLNVADCIRISDEG---VRPFVQGSSGAKLRELNLTNCIR 330
Query: 384 LTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+TDA V I + LT LNL N+TD +E + ++ L+SL+VS + I+ GLR L
Sbjct: 331 VTDASVTEIAQRCHELTYLNLRYCENVTDAGIEALGNISSLISLDVSGTSISDMGLRALG 390
Query: 443 PLKNLRSLTLESCK 456
++ L+L CK
Sbjct: 391 RQGKIKELSLSECK 404
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 27/162 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL-EHLRGLSNLTSLSFRR 115
SSL+S+D+SG+ ++D GL L ++ L + C ISD G+ E +G +L
Sbjct: 369 SSLISLDVSGTSISDMGLRALGRQGKIKELSLSECKNISDTGIQEFCKGTKHLEGCRVSS 428
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T + ++A A C R L +++I C +TDS ++
Sbjct: 429 CPQLTDEAVRAMAF----------HCRR-------------LTAVSIAGCPKMTDSCIQY 465
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC 214
L+ + L L +S C +TD + L KG ++L +L + C
Sbjct: 466 LAAACHYLHFLDVSGCIHLTDKALKCLWKGCKQLQILKMLYC 507
>gi|407849405|gb|EKG04153.1| hypothetical protein TCSYLVIO_004793 [Trypanosoma cruzi]
Length = 835
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 183/401 (45%), Gaps = 39/401 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L ++ L + +++ +++L +C +L+ + N C + LE L L LT LS N
Sbjct: 193 SNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLR--SLECLSSLQRLTELSLL-N 249
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +G+ + +L + L+ C MKL+ +N L
Sbjct: 250 MGITEEGLAFISSCNSLRHIQLDNC-------------MKLQGINC-------------L 283
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L++L +S ++V+D GI L L+ L L L ++ ++ + L L L++
Sbjct: 284 GSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVSFNRLSS-VEPVLCLDKLLELDIT 342
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++D+GC + G ++ L L + + + LT+L L+L + L L
Sbjct: 343 ENWVTDEGCAALANCGQIQKLKLASCRCVSD-VRWICALTSLRFLDLSKTHVRSADLQLL 401
Query: 297 TGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
T LE +++ S +G+ D S + GL SL L+L I D G +L T LT L L
Sbjct: 402 TVCQRLEELHVASCSGVKDASF--VEGLLSLGHLDLTDTSIKDAGTQSLRKCTALTFLSL 459
Query: 356 FGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
R +TD ++ K+L +L + G + DA + + + L +L+L LTD +
Sbjct: 460 QDCRFLTD--IQFVEPLKDLLNLNLEGTEVVDANIIPLMHCTKLEVLSLRHCLFLTD--V 515
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+ L L SL++S + +T G+ + +L + L C
Sbjct: 516 RCLRELKALKSLDLSGTYVTDEGVSDVSQCISLERIDLSGC 556
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 113/464 (24%), Positives = 195/464 (42%), Gaps = 93/464 (20%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHL 77
+T+ A +C +Q L L V+D +W+ + +SL +DLS + V + L L
Sbjct: 346 VTDEGCAALANCGQIQKLKLASCRCVSDVRWICAL----TSLRFLDLSKTHVRSADLQLL 401
Query: 78 KDCSNLQSLDFNFC----------------------IQISDGGLEHLRGLSNLTSLSFRR 115
C L+ L C I D G + LR + LT LS +
Sbjct: 402 TVCQRLEELHVASCSGVKDASFVEGLLSLGHLDLTDTSIKDAGTQSLRKCTALTFLSLQD 461
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T ++ L +L+ L+LE + ++ L KLE L+++ +C+ +D++
Sbjct: 462 CRFLT--DIQFVEPLKDLLNLNLEGTEVVDANIIPLMHCTKLEVLSLR--HCLFLTDVRC 517
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L LKSL +S + VTD G++ + L ++L GC + + L L +L ++
Sbjct: 518 LRELKALKSLDLSGTYVTDEGVSDVSQCISLERIDLSGCCLITH-FEFLRPLTALRHVIA 576
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLV 294
+R + L V LG G ++E +++ C +G G++
Sbjct: 577 DR-------------MNVLDVTGLG-------------GSGSVERVSIADCKRLGSMGML 610
Query: 295 NLTGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNL-DARQITDTGLAALTSLTGLTH 352
L +L +L + I+D + L SL+ LNL + IT+ L+A+ L LT
Sbjct: 611 EAPRLLDL---SLKKSAITDSGIHSVLLRCHSLRRLNLQNCTSITE--LSAVAQLPSLTE 665
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L + +IT+ A++ L L++ I D++SL L+
Sbjct: 666 LLVRNMKITNKSVAFVARCATLEKLQM-------VECVEITDVNSLKYLH---------- 708
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
LV L++S + +TS G+ L NL+ L L C+
Sbjct: 709 ---------RLVELDLSRTSVTSGGIVGLARCYNLKKLNLSGCR 743
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 27/163 (16%)
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G+ NL L+NL ++ L T +S+ + L+ SL+ + +++ + + L L+SL LT
Sbjct: 185 GVTNLGVLSNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLRS-LECLSSLQRLT 243
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
L L IT+ G A++ + +LR +++ NC +
Sbjct: 244 ELSLLNMGITEEGLAFISSCNSLRHIQL-------------------------DNC-MKL 277
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
+ + + L GL +L+VS +R++ G+R L L+NL L L S
Sbjct: 278 QGINCLGSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVS 320
>gi|196229410|ref|ZP_03128275.1| hypothetical protein CfE428DRAFT_1440 [Chthoniobacter flavus
Ellin428]
gi|196226642|gb|EDY21147.1| hypothetical protein CfE428DRAFT_1440 [Chthoniobacter flavus
Ellin428]
Length = 299
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 18/232 (7%)
Query: 255 KVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLTNLESINLSF 309
++ L F + +TD ++GL +L+ L CG G D GL L GL LE ++ +
Sbjct: 49 EITGLAFKDNKGLTDADYRQIRGLDHLKMLG---CGAGLDDAGLKALAGLPALEQLSTNG 105
Query: 310 TGISDGSLRKLAGLSSLKSLNL--DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAA 366
SD +R LA +L+S+ + T TGLAAL ++ L L + G+ D G A
Sbjct: 106 MTASDEGVRTLAACKALRSIAFFHPGKSFTGTGLAALAAIPNLERLTVAGSTEFGDDGLA 165
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN------CNLTDKTLELISGL 420
+ +L+ G T G++ ++ L L L + Q ++D T+ ++G+
Sbjct: 166 AVAQIAHLKEFRTWHAGATVEGIRKLQALKELKSLTIGQRLANKPPVMVSDDTVAAVAGM 225
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
L L++ +R+T L LK L NL+ LTL+ + I L+ ++LP
Sbjct: 226 PSLEMLSLQEARLTLPALGKLKQLPNLKRLTLDGIDIPEAQIAELR-QELPK 276
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 114/281 (40%), Gaps = 20/281 (7%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
A + + ++ G+ VT++ + L F ++D +RGL +L L
Sbjct: 26 FAGDPAVVAALQAKGAQVTET-------AGEITGLAFKDNKGLTDADYRQIRGLDHLKML 78
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITD 170
+ G+KA AGL L +L T G+ L L S+ T
Sbjct: 79 GC--GAGLDDAGLKALAGLPALEQLSTNGMTASDEGVRTLAACKALRSIAFFHPGKSFTG 136
Query: 171 SDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ + L+ + NL+ L ++ S + D G+A + + L T + L AL
Sbjct: 137 TGLAALAAIPNLERLTVAGSTEFGDDGLAAVAQIAHLKEFRTWHAGATVEGIRKLQALKE 196
Query: 230 LFYLNLNR-------CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L L + + +SDD + + SL++L+L +T L LK L NL+ L
Sbjct: 197 LKSLTIGQRLANKPPVMVSDDTVAAVAGMPSLEMLSLQEARLTLPALGKLKQLPNLKRLT 256
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
LD I + + L L ++ +T ++ + +++ GL
Sbjct: 257 LDGIDIPEAQIAELR--QELPKADIKWTAPNEAARKRIDGL 295
>gi|431892162|gb|ELK02609.1| F-box/LRR-repeat protein 14 [Pteropus alecto]
Length = 412
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 37/310 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEISSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSL-RKL 320
I+D L+HL + +L SLNL SC I D G+++L + S+ LS +SD + R +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLA----MGSLRLSGLDVSDDGINRMV 295
Query: 321 AGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSL 377
+ L++LN+ +ITD GL + L+ LT +DL+G RIT G + L+ L
Sbjct: 296 RQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVL 355
Query: 378 EICGGGLTDA 387
+ +TD+
Sbjct: 356 NLGLWQMTDS 365
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 152/284 (53%), Gaps = 25/284 (8%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ +S+L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT 297
+SD G + +GSL++ L +++D+ + + + + L +LN+ C I D+GL +
Sbjct: 266 ISDTGIMHLA-MGSLRLSGL---DVSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA 321
Query: 298 -GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L+ L I+L T I+ L ++ L LK LNL Q+TD+
Sbjct: 322 EHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 365
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 156/328 (47%), Gaps = 64/328 (19%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ +ESLN+ C +TD+ + + +++L++L +S C ++TDS + YLKGL
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG 260
+ +L L GC L L L LNL C+ LSD G IG L +
Sbjct: 146 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVG------IGHLAGMTRS 196
Query: 261 FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSFTG-ISDGSL 317
E G LE L L C + D L +++ GLT L +NLSF G ISD L
Sbjct: 197 AAE----------GCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGL 246
Query: 318 RKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
L+ + SL+SLNL + I+DTG+ L + S
Sbjct: 247 LHLSHMGSLRSLNLRSCDNISDTGIMHLA----------------------------MGS 278
Query: 377 LEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRI 433
L + G ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RI
Sbjct: 279 LRLSGLDVSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRI 338
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVTAND 461
T GL + L L+ L L ++T ++
Sbjct: 339 TKRGLERITQLPCLKVLNLGLWQMTDSE 366
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 54/201 (26%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A G ++L L++ D + + + L++L I
Sbjct: 275 A-----------------------MGSLRLSGLDVS-----DDGINRMVRQMHGLRTLNI 306
Query: 188 -SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
C ++TD G+ + + L +LT ++L GC +++ G
Sbjct: 307 GQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRGL 343
Query: 246 EKFSKIGSLKVLNLGFNEITD 266
E+ +++ LKVLNLG ++TD
Sbjct: 344 ERITQLPCLKVLNLGLWQMTD 364
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFR 114
G LL++ G ++D+GL+HL +L+SL+ C ISD G+ HL G L+ L
Sbjct: 229 GLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD-- 285
Query: 115 RNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDS 171
++ G+ + + L L++ +C RI + L + L +L +++ C IT
Sbjct: 286 ----VSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKR 341
Query: 172 DMKPLSGLTNLKSLQISCSKVTDS 195
++ ++ L LK L + ++TDS
Sbjct: 342 GLERITQLPCLKVLNLGLWQMTDS 365
>gi|299067411|emb|CBJ38610.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum CMR15]
Length = 620
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 114/411 (27%), Positives = 171/411 (41%), Gaps = 29/411 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL+S+ L G + D L +++SLD + + DG + LTSL+ N
Sbjct: 212 TSLVSLTLIGCGIGDRAAQALAASQSIKSLDLSVNMIGRDGA--QALAAAPLTSLNLYYN 269
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I G A A L LD + + G L L LN+ N I ++ L
Sbjct: 270 E-IGDDGAGALAASKTLTSLDASKNGIGNAGAEALAKNTVLRELNLA-HNMIGTPGVRAL 327
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+G T+L L + +++ D+G L G + L L ++ + +L+ +L L+L+
Sbjct: 328 AGNTSLTELDLGGNRLGDAGALELAGNRSLLSLKVDHNEIGGGGAQALARHATLTSLDLS 387
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ G +L VLNL F I L +L L L+ IGD G + L
Sbjct: 388 YNAIGLWGAGALGANTTLSVLNLSFCGIDSHSACALACNKSLAELYLNGNWIGDYGALEL 447
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L ++LS GI + L G +L SL L I D G AAL LT LDL
Sbjct: 448 AKNRTLTLLDLSRNGIRNAGAEALGGNQALTSLKLAGNGIDDDGAAALARHPRLTTLDLS 507
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
RI GA +H+ ++L L+LSQN + E
Sbjct: 508 RNRIGAEGA------------------------RHLAQSATLAELDLSQN-RIGPDGAEA 542
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+S T L++LNVS++ I AG R L +L SL + + K L++
Sbjct: 543 LSQSTALITLNVSHNAIGEAGARSLADSASLTSLDARRNGIGEDGAKVLEA 593
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 117/247 (47%), Gaps = 12/247 (4%)
Query: 220 CLDSLSALG-SLFYLNLNRC---QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
L++L AL +L +L + RC +S +G +++ LK LNL EI E L
Sbjct: 153 TLEALKALPPTLEHLEIGRCTGSAISAEGLAHLAEM-PLKSLNLTGIEIGVEGARTLAAS 211
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
T+L SL L CGIGD L +++S++LS I + LA + L SLNL +
Sbjct: 212 TSLVSLTLIGCGIGDRAAQALAASQSIKSLDLSVNMIGRDGAQALAA-APLTSLNLYYNE 270
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I D G AL + LT LD I ++GA L LR L + + GV+ +
Sbjct: 271 IGDDGAGALAASKTLTSLDASKNGIGNAGAEALAKNTVLRELNLAHNMIGTPGVRALAGN 330
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+SLT L+L N L D ++G L+SL V ++ I G + L R TL S
Sbjct: 331 TSLTELDLGGN-RLGDAGALELAGNRSLLSLKVDHNEIGGGGAQALA-----RHATLTSL 384
Query: 456 KVTANDI 462
++ N I
Sbjct: 385 DLSYNAI 391
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 124/300 (41%), Gaps = 58/300 (19%)
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
S R +T + +KA L L++ RCT G ++ +GL L +
Sbjct: 145 SVRFKGELTLEALKALP--PTLEHLEIGRCT---GSAISAEGLAHLAEMP---------- 189
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
LKSL ++ ++ G L L L L GC + +L+A S+
Sbjct: 190 ----------LKSLNLTGIEIGVEGARTLAASTSLVSLTLIGCGIGDRAAQALAASQSIK 239
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L+L+ + DG + + L LNL +NE IGD+
Sbjct: 240 SLDLSVNMIGRDGAQALAAA-PLTSLNLYYNE------------------------IGDD 274
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G L L S++ S GI + LA + L+ LNL I G+ AL T LT
Sbjct: 275 GAGALAASKTLTSLDASKNGIGNAGAEALAKNTVLRELNLAHNMIGTPGVRALAGNTSLT 334
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEI----CGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
LDL G R+ D+GA L ++L SL++ GGG A +H ++LT L+LS N
Sbjct: 335 ELDLGGNRLGDAGALELAGNRSLLSLKVDHNEIGGGGAQALARH----ATLTSLDLSYNA 390
>gi|156403875|ref|XP_001640133.1| predicted protein [Nematostella vectensis]
gi|156227266|gb|EDO48070.1| predicted protein [Nematostella vectensis]
Length = 779
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 139/479 (29%), Positives = 224/479 (46%), Gaps = 56/479 (11%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
LT SL+ C LQDL L + GV D+ M IA +SLL ++LS ++DS L +L
Sbjct: 310 LTRESLKIIGQCRNLQDLNLSEVKGVTDEVMKDIAMGCTSLLYLNLSSCLISDSTLRYLA 369
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGL---- 130
+ C+N+Q L +C + S+ GL +L +G + L IT G K F G+
Sbjct: 370 RYCTNMQYLSLAYCTKFSNKGLSYLANGKGCHKVIYLDLSGCEQITDDGYK-FVGMGCSS 428
Query: 131 INLVKL-DLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+N + L DL R I + L + LN + ++D+ K L+ L L+I
Sbjct: 429 LNTIILNDLPGLRDACIQSLTSECRTLRTVSILNSPF---LSDTAYKSLALCRKLHKLRI 485
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+++TD+ + L K +L + + CP +T L +L+++ L +N+ C ++ D
Sbjct: 486 EGNNRITDASVKVLAKSCSQLEHVYMVDCPRLTDLSLKALASVRHLNVINVADCVRIQDT 545
Query: 244 GCEKF------SKIGSLKVLN-LGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 295
G + SKI L + N + V+ NL + C + D G+
Sbjct: 546 GVRQIVEGPSGSKIKELNLTNCVRVMPTVIRRFVYCFRCHNLVYASFCYCEHVTDAGVEL 605
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L L NL SI++S ISD G+SSL + N R + +A+T L GL +
Sbjct: 606 LGTLPNLISIDMSGCNISDH------GVSSLGN-NAMMRDVVIAECSAITDL-GLQKM-- 655
Query: 356 FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS-LTLLNLSQNCNLTDKT 413
+ + L +L+I LTD +K++ L LNLS LTD +
Sbjct: 656 ------------CQQCRFLENLDISHCTNLTDNAIKNLVFCCRLLRTLNLSGCDKLTDSS 703
Query: 414 LELISGLTGLVS-LNVSNSRITS-AGLRHL-KPLKNLRSLTLESCK-VTANDIKRLQSR 468
L+ +SG+ + L++SN + S LR+L K K L+SLT+ C+ +T N +++ Q +
Sbjct: 704 LQYLSGVCHYLEMLDLSNCTLVSDKALRYLRKGCKRLQSLTILYCRNITKNAVQKFQMK 762
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 154/349 (44%), Gaps = 53/349 (15%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLK-GLQKLTLLNLEGC 214
L LN+K C +T +K + NL+ L +S K VTD + + G L LNL C
Sbjct: 299 LGHLNLKNCYNLTRESLKIIGQCRNLQDLNLSEVKGVTDEVMKDIAMGCTSLLYLNLSSC 358
Query: 215 PVTAACLDSLSALGS-LFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNL---GFNEITDEC 268
++ + L L+ + + YL+L C + S+ G + G KV+ L G +ITD+
Sbjct: 359 LISDSTLRYLARYCTNMQYLSLAYCTKFSNKGLSYLANGKGCHKVIYLDLSGCEQITDDG 418
Query: 269 LVHL-KGLTNLESLNL-DSCGIGDEGLVNLTG----LTNLESINLSFTGISDGSLRKLAG 322
+ G ++L ++ L D G+ D + +LT L + +N F +SD + + LA
Sbjct: 419 YKFVGMGCSSLNTIILNDLPGLRDACIQSLTSECRTLRTVSILNSPF--LSDTAYKSLAL 476
Query: 323 LSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 379
L L ++ +ITD + L S + L H+ + R+TD L + ++L + +
Sbjct: 477 CRKLHKLRIEGNNRITDASVKVLAKSCSQLEHVYMVDCPRLTDLSLKALASVRHLNVINV 536
Query: 380 CGG-GLTDAGVKHIKDLSS---LTLLNLSQNC---------------------------- 407
+ D GV+ I + S + LNL+ NC
Sbjct: 537 ADCVRIQDTGVRQIVEGPSGSKIKELNLT-NCVRVMPTVIRRFVYCFRCHNLVYASFCYC 595
Query: 408 -NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
++TD +EL+ L L+S+++S I+ G+ L +R + + C
Sbjct: 596 EHVTDAGVELLGTLPNLISIDMSGCNISDHGVSSLGNNAMMRDVVIAEC 644
>gi|320165161|gb|EFW42060.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 641
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 101/220 (45%), Gaps = 1/220 (0%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T+ + + L +L YLNLN + F+ + +LK L LG+NE+ D GL
Sbjct: 74 ITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGYNELADISATAFAGL 133
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
T L +L+L S I LT L + L +++ + AGLS+L LNL++ Q
Sbjct: 134 TALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAGLSALALLNLESNQ 193
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
IT A T LT LT L L +IT + L+ LE+ +T L
Sbjct: 194 ITSISANAFTDLTALTLLYLQRNQITSIPTSAFTGLTALKDLELFNNQITAIAANTFSGL 253
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
S+LT L L N +T +GL L +L + +R T+
Sbjct: 254 SALTQLYLFSN-QITSIAANAFTGLPALTALALDGNRFTT 292
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 105/233 (45%), Gaps = 5/233 (2%)
Query: 131 INLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+N L+L + T I G GL L LN+ N I +GLT LK L +
Sbjct: 62 VNTTSLELNNNQITSISAGA--FTGLTALTYLNLN-SNSIRSISANAFTGLTALKHLPLG 118
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++ D GL L L+L+ +T+ + ++L +L YL L+ QL++ F
Sbjct: 119 YNELADISATAFAGLTALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVF 178
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
+ + +L +LNL N+IT LT L L L I TGLT L+ + L
Sbjct: 179 AGLSALALLNLESNQITSISANAFTDLTALTLLYLQRNQITSIPTSAFTGLTALKDLELF 238
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
I+ + +GLS+L L L + QIT A T L LT L L G R T
Sbjct: 239 NNQITAIAANTFSGLSALTQLYLFSNQITSIAANAFTGLPALTALALDGNRFT 291
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 101/225 (44%), Gaps = 23/225 (10%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316
L L N+IT GLT L LNL+S I TGLT L+ + L + ++D S
Sbjct: 67 LELNNNQITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGYNELADIS 126
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
AGL++L +L+L + QIT +A SLT LT+L L ++T+ A L
Sbjct: 127 ATAFAGLTALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAGLSALAL 186
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------CNLTD-KTLELI-------- 417
L + +T DL++LTLL L +N LT K LEL
Sbjct: 187 LNLESNQITSISANAFTDLTALTLLYLQRNQITSIPTSAFTGLTALKDLELFNNQITAIA 246
Query: 418 ----SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
SGL+ L L + +++ITS L L +L L+ + T
Sbjct: 247 ANTFSGLSALTQLYLFSNQITSIAANAFTGLPALTALALDGNRFT 291
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 2/231 (0%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
N TSL NN IT+ AF GL L L+L + GL L+ L + + N
Sbjct: 63 NTTSLELN-NNQITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGY-N 120
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+ D +GLT L +L + +++T + L LT L L+ +T + +
Sbjct: 121 ELADISATAFAGLTALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAG 180
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L +L LNL Q++ F+ + +L +L L N+IT GLT L+ L L +
Sbjct: 181 LSALALLNLESNQITSISANAFTDLTALTLLYLQRNQITSIPTSAFTGLTALKDLELFNN 240
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
I +GL+ L + L I+ + GL +L +L LD + T
Sbjct: 241 QITAIAANTFSGLSALTQLYLFSNQITSIAANAFTGLPALTALALDGNRFT 291
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 4/160 (2%)
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
T+LE N T IS G+ GL++L LNL++ I A T LT L HL L
Sbjct: 65 TSLELNNNQITSISAGAFT---GLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGYNE 121
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
+ D A L +L + +T L++LT L L N LT+ + +G
Sbjct: 122 LADISATAFAGLTALNALHLQSNQITSISASAFASLTTLTYLRLDSN-QLTNFAANVFAG 180
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
L+ L LN+ +++ITS L L L L+ ++T+
Sbjct: 181 LSALALLNLESNQITSISANAFTDLTALTLLYLQRNQITS 220
>gi|283779449|ref|YP_003370204.1| hypothetical protein Psta_1669 [Pirellula staleyi DSM 6068]
gi|283437902|gb|ADB16344.1| hypothetical protein Psta_1669 [Pirellula staleyi DSM 6068]
Length = 633
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 71/138 (51%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L R ++D G + + LK L+L ++TD L L LT L L L+ I
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ + L NLE ++LS I+D L K+A L LK L L +TD GLA L SL L
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597
Query: 353 LDLFGARITDSGAAYLRN 370
LDL G R++ A L++
Sbjct: 598 LDLRGTRVSADAAEKLKS 615
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD + L LK L +S +KVTD+G+ L L +L L LEG +++A + +++
Sbjct: 483 TTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSASIPAIA 542
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L +L L+L++ ++DD K + + LKVL L +TD L L L NLE L+L
Sbjct: 543 RLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEMLDL 600
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 4/148 (2%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316
L+LG +TD+ L L L+ L+L + D GL L LT L + L T IS S
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+ +A L +L+ L+L I D LA + +L L L L G +TD+G A L + +NL
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597
Query: 377 LEICGGGLT-DAGVK---HIKDLSSLTL 400
L++ G ++ DA K IK L+++ L
Sbjct: 598 LDLRGTRVSADAAEKLKSRIKSLANVLL 625
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%)
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
+GF +++D+ L+ +L+L + D+GL L L+ ++LS T ++D L
Sbjct: 456 VGFLDVSDQDLLACVSPATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLE 515
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
+L L+ L L L+ I+ + A+ L L LDL I D A + K L+ L
Sbjct: 516 QLDQLTQLNQLFLEGTAISSASIPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLY 575
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNL 403
+ G +TDAG+ + L +L +L+L
Sbjct: 576 LVGTPVTDAGLAKLVSLQNLEMLDL 600
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 1/160 (0%)
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
F +SD L ++ +L+L +TD GLA L L LDL ++TD+G L
Sbjct: 458 FLDVSDQDLLACVSPATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQL 517
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
L L + G ++ A + I L +L L+LS+ N+ D L I+ L L L +
Sbjct: 518 DQLTQLNQLFLEGTAISSASIPAIARLRNLEELDLSK-VNIADDDLAKIATLKQLKVLYL 576
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 468
+ +T AGL L L+NL L L +V+A+ ++L+SR
Sbjct: 577 VGTPVTDAGLAKLVSLQNLEMLDLRGTRVSADAAEKLKSR 616
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L + + VTD G+A L ++L L+L VT L+ L L L L L +S
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
+++ +L+ L+L I D+ L + L L+ L L + D GL L L NLE
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597
Query: 305 INLSFTGISDGSLRKLAGLSSLKSL 329
++L T +S + KL S +KSL
Sbjct: 598 LDLRGTRVSADAAEKLK--SRIKSL 620
>gi|290993104|ref|XP_002679173.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284092789|gb|EFC46429.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 370
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 127/263 (48%), Gaps = 2/263 (0%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D + +S + +L L ++ ++++D G+ ++ + LT L ++ V S+ + L
Sbjct: 109 NDAQVISEMKSLTKLDLNGNRISDEGVDFISKMSGLTYLRIDSNAVHDEGAKSIQGMKGL 168
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L ++ + G E S++G+L L++ N + E + + NL SL +D IG
Sbjct: 169 RTLKVSNNSFFEVGFEAISQMGNLTKLDMSENSLGIEGTKSIGIMKNLTSLKIDYNHIGS 228
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
EG+ L + L +++ I + + + L L L++ + + G ++++L L
Sbjct: 229 EGVKYLNEMKQLTKLSIVENQIDEEGAKYIGELKQLTILDISFNYVGEKGAKSISTLNKL 288
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T LD+ I ++GA L N L L+I + G K + L+ L LN+S N N+
Sbjct: 289 TMLDIIENNIGENGAISLSNLNQLTKLDINSNNIGHLGAKSLVKLNQLKELNISYN-NIN 347
Query: 411 DKTLELISGLTGLVSL-NVSNSR 432
D + +I + L SL N S +R
Sbjct: 348 DLEINIIRQMKNLKSLTNHSQNR 370
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 127/279 (45%), Gaps = 29/279 (10%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
+ S+ SL +DL+G+ ++D G+ + S L L + + D G + ++G+ L +L
Sbjct: 113 VISEMKSLTKLDLNGNRISDEGVDFISKMSGLTYLRID-SNAVHDEGAKSIQGMKGLRTL 171
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
NN+ G +A + + NL KLD+ E I G
Sbjct: 172 KV-SNNSFFEVGFEAISQMGNLTKLDMSENSLGIEG------------------------ 206
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K + + NL SL+I + + G+ YL +++LT L++ + + L L
Sbjct: 207 --TKSIGIMKNLTSLKIDYNHIGSEGVKYLNEMKQLTKLSIVENQIDEEGAKYIGELKQL 264
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L+++ + + G + S + L +L++ N I + + L L L L+++S IG
Sbjct: 265 TILDISFNYVGEKGAKSISTLNKLTMLDIIENNIGENGAISLSNLNQLTKLDINSNNIGH 324
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
G +L L L+ +N+S+ I+D + + + +LKSL
Sbjct: 325 LGAKSLVKLNQLKELNISYNNINDLEINIIRQMKNLKSL 363
>gi|428303964|ref|YP_007140789.1| hypothetical protein Cri9333_0293 [Crinalium epipsammum PCC 9333]
gi|428245499|gb|AFZ11279.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
9333]
Length = 409
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 146/287 (50%), Gaps = 32/287 (11%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++ DS + L+ ++ LD N +I+ LE ++ L NLT L N +
Sbjct: 128 EIPDSKRLTLEVLQGIKVLDANNA-EIT--SLEGIQALRNLTILRLDGNKI---SDVTPL 181
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
AGL NL L L+ H + ++K L L +L++ + N SD+ PL+GL NL+ L++
Sbjct: 182 AGLTNLRNLRLD-----HSQISDVKPLTGLTNLSVLYLNKNQISDVTPLAGLINLRDLRL 236
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF-YLNLNRCQLSD--DG 244
++++D + L G L+NL G + + +S + LF ++NL L+D D
Sbjct: 237 DQNQISD--VTPLAG-----LINLRGLGLDQ---NQISDVKPLFGFVNLTTLYLNDNSDV 286
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
FS + +L VL L N+I+D + L LTNL L LD I D + L L L
Sbjct: 287 TPLFS-LANLTVLTLYDNKISD--VKPLTALTNLTVLELDQNQISD--VKPLASLARLTR 341
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGL 350
++L+ ISD + LAGL+ L SL L QI+D L LT+L+GL
Sbjct: 342 LSLNDNQISD--VEPLAGLAKLTSLRLSQNQISDVKPLTGLTNLSGL 386
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 132/255 (51%), Gaps = 33/255 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G+ ++D + L +NL++L + QISD ++ L GL+NL+ L +N
Sbjct: 170 LDGNKISD--VTPLAGLTNLRNLRLDHS-QISD--VKPLTGLTNLSVLYLNKNQI---SD 221
Query: 124 MKAFAGLINL--VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ AGLINL ++LD + + + GL+NL+GL L+ I SD+KPL G
Sbjct: 222 VTPLAGLINLRDLRLDQNQISDVTPLAGLINLRGL-GLDQNQI--------SDVKPLFGF 272
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NL +L ++ +S + L L LT+L L ++ + L+AL +L L L++ Q
Sbjct: 273 VNLTTLYLN----DNSDVTPLFSLANLTVLTLYDNKISD--VKPLTALTNLTVLELDQNQ 326
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+SD + + + L L+L N+I+D + L GL L SL L I D + LTGL
Sbjct: 327 ISD--VKPLASLARLTRLSLNDNQISD--VEPLAGLAKLTSLRLSQNQISD--VKPLTGL 380
Query: 300 TNLESINLSFTGISD 314
TNL + LS IS+
Sbjct: 381 TNLSGLGLSDNPISN 395
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 130/280 (46%), Gaps = 56/280 (20%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+ + +L+G+ L +L I + SD+ PL+GLTNL++L++ S+++D + L GL
Sbjct: 150 NAEITSLEGIQALRNLTILRLDGNKISDVTPLAGLTNLRNLRLDHSQISD--VKPLTGLT 207
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
L S+ YLN N Q+SD + + +L+ L L N+I
Sbjct: 208 NL----------------------SVLYLNKN--QISD--VTPLAGLINLRDLRLDQNQI 241
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDE----GLVNLT--------------GLTNLESIN 306
+D + L GL NL L LD I D G VNLT L NL +
Sbjct: 242 SD--VTPLAGLINLRGLGLDQNQISDVKPLFGFVNLTTLYLNDNSDVTPLFSLANLTVLT 299
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
L ISD ++ L L++L L LD QI+D + L SL LT L L +I+D
Sbjct: 300 LYDNKISD--VKPLTALTNLTVLELDQNQISD--VKPLASLARLTRLSLNDNQISD--VE 353
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L L SL + ++D VK + L++L+ L LS N
Sbjct: 354 PLAGLAKLTSLRLSQNQISD--VKPLTGLTNLSGLGLSDN 391
>gi|75907715|ref|YP_322011.1| small GTP-binding protein domain-containing protein [Anabaena
variabilis ATCC 29413]
gi|75701440|gb|ABA21116.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC
29413]
Length = 1107
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 148/288 (51%), Gaps = 22/288 (7%)
Query: 176 LSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
L GL NL+ L IS ++ D + + L++L L+ +E + A ++ L +L +
Sbjct: 76 LLGLPNLRKLDISGNPLERIPDL-VTQILHLEELILIRVEITEIPEA----IANLTNLTH 130
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-- 290
L L Q+++ E +K+ +L L+L N+IT E + LTNL L L S I +
Sbjct: 131 LILFSNQITE-TPEAIAKLTNLTQLDLSDNQIT-EIPEAIANLTNLTHLILFSNQITEIP 188
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
E + NLT LT L+ + T I + +A L++L L+L QIT+ A+ +LT L
Sbjct: 189 EAIANLTNLTQLDLGDNQITEIP----KAIANLTNLTQLDLGDNQITEIP-KAIANLTNL 243
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
THL LF +IT+ A + N NL L++ +T+ K I +L++LT L LS N
Sbjct: 244 THLILFSNQITEIPEA-IANLTNLMQLDLSYNQITEIP-KAIANLTNLTQLVLSDNK--I 299
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ E I+ LT L L++S+++IT + L NL L K+T
Sbjct: 300 TEIPEAIANLTNLTQLDLSDNKITEIP-ETIANLTNLTELYFNYNKIT 346
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 156/305 (51%), Gaps = 23/305 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DLS + +T+ + + +NL L F QI++ E + L+NLT L +
Sbjct: 149 TNLTQLDLSDNQITEIPEA-IANLTNLTHLIL-FSNQITEIP-EAIANLTNLTQLDLG-D 204
Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N IT + KA A L NL +LDL + T I + NL L L I + N IT+ +
Sbjct: 205 NQIT-EIPKAIANLTNLTQLDLGDNQITEIPKAIANLTNLTHL----ILFSNQITEIP-E 258
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
++ LTNL L +S +++T+ A + L LT L L +T ++++ L +L L+
Sbjct: 259 AIANLTNLMQLDLSYNQITEIPKA-IANLTNLTQLVLSDNKITEIP-EAIANLTNLTQLD 316
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EG 292
L+ ++++ E + + +L L +N+IT + + LTNL L+L S I E
Sbjct: 317 LSDNKITE-IPETIANLTNLTELYFNYNKIT-QIAEAIAKLTNLTELHLSSNQITQIPEA 374
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ NLT LT L L++ I+ + +A L++L L+LD QIT AL SL L
Sbjct: 375 IANLTNLTEL---YLNYNKITQIA-EAIAKLTNLTELHLDGNQITQIP-EALESLPKLEK 429
Query: 353 LDLFG 357
LDL G
Sbjct: 430 LDLRG 434
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 30/196 (15%)
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
G+ + D L + G NL++L L+ L GL NL ++ IS L +
Sbjct: 52 GYEWVGDRYLKKVSG-NNLKTLPLE-----------LLGLPNLRKLD-----ISGNPLER 94
Query: 320 LAGLSS----LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+ L + L+ L L +IT+ A+ +LT LTHL LF +IT++ A + NL
Sbjct: 95 IPDLVTQILHLEELILIRVEITEIP-EAIANLTNLTHLILFSNQITETPEA-IAKLTNLT 152
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L++ +T+ + I +L++LT L L N + E I+ LT L L++ +++IT
Sbjct: 153 QLDLSDNQITEIP-EAIANLTNLTHLILF--SNQITEIPEAIANLTNLTQLDLGDNQITE 209
Query: 436 AGLRHLKPLKNLRSLT 451
K + NL +LT
Sbjct: 210 IP----KAIANLTNLT 221
>gi|71668063|ref|XP_820975.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886340|gb|EAN99124.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 930
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/470 (24%), Positives = 202/470 (42%), Gaps = 73/470 (15%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
R ++Q +L YS +T+ SL A R C L L L Q+ G M ++ + SL +
Sbjct: 412 RALNQLRVLDLGYS-SVTDDSLTALRFCPELAKLDL-QWCGRITSLMCLVGALCDSLREL 469
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
+L+ + VTD GL+ LKD + L+ + C +SD + L NLT L
Sbjct: 470 NLTETSVTDEGLVPLKDFAALEWISLEGCGAVSDVNV-----LCNLTRLR---------- 514
Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
++D+ R + G+V+L L + ++ C +TD++ L L L
Sbjct: 515 ------------EVDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGALQQL 560
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
+ + +S VT+ GIA L G + L L L+ C ++ L L L L+L+ + +
Sbjct: 561 EEVDLSDCPVTNEGIAALFGARSLRKLRLQSCHAVND-VNFLGGLEHLMLLDLHHTTVDE 619
Query: 243 DGCEKFSK-------------------------IGSLKVLNLGFNEITDECLVHLKGLTN 277
+G ++ + LK L+L ++T + L L+
Sbjct: 620 EGSVGLAQCPQLMTLIMHSVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPV 679
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
LE+L+L C N+T L L S TG+ R + ++ + +
Sbjct: 680 LETLSLRGCK-------NITHLDFLILQPSSGTGVCAIVPRDVEPHDTVGDIIAGKEKNP 732
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D G + + ++T + I + A + + LR L + G G+TD G++ ++
Sbjct: 733 DDGPSPIETMTTNDGV------IKSTAVAAVVSRHRLRELTLSGTGVTDEGLRALQYCPG 786
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
L L L+ N TD + ++ L+ L L++S + +T +GL L P NL
Sbjct: 787 LERLRLAHCKNFTD--VAVLRWLSQLKELDLSATGVTGSGLAKLSPSGNL 834
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 109/452 (24%), Positives = 188/452 (41%), Gaps = 61/452 (13%)
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
LS+ +S S L H C+ L+ LD ++ +G + L+ L+ LS I
Sbjct: 347 LSLCMSSSVSCTRFLRHRSLCA-LRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGCRKI 405
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ ++ L L LDL + L L+ +L L+++WC IT S M + L
Sbjct: 406 --ESLQWLRALNQLRVLDLGYSSVTDDSLTALRFCPELAKLDLQWCGRIT-SLMCLVGAL 462
Query: 180 TN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L+ L ++ + VTD G+ LK L ++LEGC + ++ L L L +++ R
Sbjct: 463 CDSLRELNLTETSVTDEGLVPLKDFAALEWISLEGCGAVSD-VNVLCNLTRLREVDVGRT 521
Query: 239 QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++++ G S+ +L+V+ + +TD L L LE ++L C + +EG+ L
Sbjct: 522 RVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGALQQLEEVDLSDCPVTNEGIAALF 579
Query: 298 GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS---------- 346
G +L + L S ++D + L GL L L+L + + G L
Sbjct: 580 GARSLRKLRLQSCHAVNDVNF--LGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMH 637
Query: 347 ---------------LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
L L LDL ++T ++LR L +L + G K+
Sbjct: 638 SVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPVLETLSL-------RGCKN 690
Query: 392 IKDLSSLTLLNLSQN--CNLTDKTLE-------LIS--------GLTGLVSLNVSNSRIT 434
I L L L S C + + +E +I+ G + + ++ ++ I
Sbjct: 691 ITHLDFLILQPSSGTGVCAIVPRDVEPHDTVGDIIAGKEKNPDDGPSPIETMTTNDGVIK 750
Query: 435 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
S + + LR LTL VT ++ LQ
Sbjct: 751 STAVAAVVSRHRLRELTLSGTGVTDEGLRALQ 782
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 135/336 (40%), Gaps = 67/336 (19%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L VD+ + VT+ G++ L C L+ + C +++D L L L + +
Sbjct: 511 TRLREVDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGALQQLEEVDLS-D 567
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIH-----GGLVNLK---------------GLMK 156
+T +G+ A G +L KL L+ C ++ GGL +L GL +
Sbjct: 568 CPVTNEGIAALFGARSLRKLRLQSCHAVNDVNFLGGLEHLMLLDLHHTTVDEEGSVGLAQ 627
Query: 157 LESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L + + ++ + L LK L +S +KVT +++L+ L L+L G
Sbjct: 628 CPQLMTLIMHSVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPVLETLSLRG 687
Query: 214 C------------PV--TAAC------LDSLSALGSLFY---------LNLNRCQLSDDG 244
C P T C ++ +G + + ++DG
Sbjct: 688 CKNITHLDFLILQPSSGTGVCAIVPRDVEPHDTVGDIIAGKEKNPDDGPSPIETMTTNDG 747
Query: 245 CEKFSKIGS------LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
K + + + L+ L L +TDE L L+ LE L L C + V L
Sbjct: 748 VIKSTAVAAVVSRHRLRELTLSGTGVTDEGLRALQYCPGLERLRLAHCKNFTDVAV-LRW 806
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L+ L+ ++LS TG++ L KL+ S NL AR
Sbjct: 807 LSQLKELDLSATGVTGSGLAKLS-----PSGNLPAR 837
>gi|328719510|ref|XP_001948716.2| PREDICTED: f-box/LRR-repeat protein 14-like [Acyrthosiphon pisum]
Length = 467
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 168/348 (48%), Gaps = 72/348 (20%)
Query: 52 IASQGSSLLSVDLSG-SDVTDSGL--IHLKDCSNLQSLDFNFCIQISDGGL----EHLRG 104
I +L+S+++SG + D L + L+ N+ L+ + C Q++DGGL + LRG
Sbjct: 156 IVQNVPNLVSLNMSGCYHIKDEDLHQMFLEHHPNITELNLSLCKQLTDGGLIRIADTLRG 215
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER-CTRIHG-GLVNLKGLMK------ 156
L T L + + IT +G A + +K R C + GL ++ G K
Sbjct: 216 L---TRLEIQGCSYITNKGFSHIARKLKKLKYLNLRSCWHLSDVGLSHISGASKDSTDGN 272
Query: 157 --LESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 212
LE L ++ C ITD +K +S GL +L+SL +S C +TD+G+ Y+ + L LNL
Sbjct: 273 AQLEFLGLQDCQHITDEGLKYVSEGLRSLRSLNLSFCVNITDTGLNYVSRMNTLDELNLS 332
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
C D++S +G + YL+ +GC +K+GSL N+ F ++I D+ L+H
Sbjct: 333 AC-------DNISDIG-IGYLS--------EGC---TKLGSL---NVSFCDKIGDQALLH 370
Query: 272 L-KGLTNLESLNLDSCGIGDEGLVNLT-GLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+ GL L +L+L SC I D+G++ ++ L NLE +N+
Sbjct: 371 VSHGLYGLHTLSLGSCQISDDGILYISKSLRNLEVLNIG--------------------- 409
Query: 330 NLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLR 375
+TD GL L+ S L +DL+G +IT + N+R
Sbjct: 410 --QCNSVTDKGLEHLSDSCKLLRSIDLYGCTKITKEAKEKILKMPNIR 455
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 153/317 (48%), Gaps = 29/317 (9%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYLKG-LQKL 206
++ + L SLN+ C I D D+ L N+ L +S C ++TD G+ + L+ L
Sbjct: 157 VQNVPNLVSLNMSGCYHIKDEDLHQMFLEHHPNITELNLSLCKQLTDGGLIRIADTLRGL 216
Query: 207 TLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
T L ++GC +T ++ R C S +G L ++ + T
Sbjct: 217 TRLEIQGCSYITNKGFSHIARKLKKLKYLNLR------SCWHLSDVG-LSHISGASKDST 269
Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAG 322
D G LE L L C I DEGL ++ GL +L S+NLSF I+D L ++
Sbjct: 270 D-------GNAQLEFLGLQDCQHITDEGLKYVSEGLRSLRSLNLSFCVNITDTGLNYVSR 322
Query: 323 LSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRN-FKNLRSLE 378
+++L LNL A I+D G+ L+ T L L++ F +I D ++ + L +L
Sbjct: 323 MNTLDELNLSACDNISDIGIGYLSEGCTKLGSLNVSFCDKIGDQALLHVSHGLYGLHTLS 382
Query: 379 ICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLV-SLNVSN-SRITS 435
+ ++D G+ +I K L +L +LN+ Q ++TDK LE +S L+ S+++ ++IT
Sbjct: 383 LGSCQISDDGILYISKSLRNLEVLNIGQCNSVTDKGLEHLSDSCKLLRSIDLYGCTKITK 442
Query: 436 AGLRHLKPLKNLRSLTL 452
+ + N+R T+
Sbjct: 443 EAKEKILKMPNIRRDTV 459
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 6/156 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
+ D+ + ++ SL S++LS ++TD+GL ++ + L L+ + C ISD G+ +L
Sbjct: 286 ITDEGLKYVSEGLRSLRSLNLSFCVNITDTGLNYVSRMNTLDELNLSACDNISDIGIGYL 345
Query: 103 -RGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLES 159
G + L SL+ + I Q + GL L L L C G++ + K L LE
Sbjct: 346 SEGCTKLGSLNVSFCDKIGDQALLHVSHGLYGLHTLSLGSCQISDDGILYISKSLRNLEV 405
Query: 160 LNIKWCNCITDSDMKPLSGLTN-LKSLQI-SCSKVT 193
LNI CN +TD ++ LS L+S+ + C+K+T
Sbjct: 406 LNIGQCNSVTDKGLEHLSDSCKLLRSIDLYGCTKIT 441
>gi|406830743|ref|ZP_11090337.1| hypothetical protein SpalD1_03864 [Schlesneria paludicola DSM
18645]
Length = 304
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 135/274 (49%), Gaps = 14/274 (5%)
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG---CEKFSKIGSLKVLNLGFN 262
+ +L EG V +DSL G + + N Q++D+G ++ ++ +++ L G
Sbjct: 27 IEILEREGAIVQR--VDSLPD-GPVSVVTYNLRQVTDEGNRALKELFELPAIEFLGTGDT 83
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLA 321
E+ L L+G +L+ L++ I D+ L L +LE + L + I L ++
Sbjct: 84 ELQPATLRALQGKRSLKRLSISFAKISDDSAKLLGTLRSLEVLELRAQVEIHPKVLGEVF 143
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI-C 380
L+SLK L L R D + L + L L + ++D+G A LR K+LR+L I
Sbjct: 144 NLTSLKELTLSDRLADDPAMEELRRMPYLKTLTVRSVFVSDAGLASLRQVKSLRNLRILL 203
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDKTLELISGLTGLVSLN-VSNSRITSAGL 438
G +T+ GV+H LS L L +L N+TDK L+ + GL L VS +++T +
Sbjct: 204 GPKVTEEGVRH---LSELDLADLDITYLNVTDKELKSLRKFKGLKGLRLVSAAKVTDEAV 260
Query: 439 RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
L L L+ L + K++ I +L+ R LPN
Sbjct: 261 PFLSELSELKRLDIADAKLSKAGIGQLE-RALPN 293
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 18/235 (7%)
Query: 69 VTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLT--SLSFRRNNAITAQGM 124
VTD G LK+ L +++F ++ L L+G +L S+SF + I+
Sbjct: 58 VTDEGNRALKELFELPAIEFLGTGDTELQPATLRALQGKRSLKRLSISFAK---ISDDSA 114
Query: 125 KAFAGLINLVKLDLERCTRIH----GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
K L +L L+L IH G + NL L +L +L+ + + D M+ L +
Sbjct: 115 KLLGTLRSLEVLELRAQVEIHPKVLGEVFNLTSLKEL-TLSDRLAD---DPAMEELRRMP 170
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
LK+L + V+D+G+A L+ ++ L L L G VT + LS L L L++
Sbjct: 171 YLKTLTVRSVFVSDAGLASLRQVKSLRNLRILLGPKVTEEGVRHLSEL-DLADLDITYLN 229
Query: 240 LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++D + K LK L L ++TDE + L L+ L+ L++ + G+
Sbjct: 230 VTDKELKSLRKFKGLKGLRLVSAAKVTDEAVPFLSELSELKRLDIADAKLSKAGI 284
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL + LS D + L+ L++L + +SD GL LR + +L +L
Sbjct: 146 TSLKELTLSDRLADDPAMEELRRMPYLKTLTVR-SVFVSDAGLASLRQVKSLRNLRILLG 204
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T +G++ + L +L LD+ L +L+ L+ L + +TD + L
Sbjct: 205 PKVTEEGVRHLSEL-DLADLDITYLNVTDKELKSLRKFKGLKGLRLVSAAKVTDEAVPFL 263
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
S L+ LK L I+ +K++ +GI L+
Sbjct: 264 SELSELKRLDIADAKLSKAGIGQLE 288
>gi|149178815|ref|ZP_01857396.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
gi|148842356|gb|EDL56738.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
Length = 1189
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 96/180 (53%), Gaps = 12/180 (6%)
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG 357
LT++E IN+ ++D L L G +L+ +NL + + TD GLA L+ GL LDL+G
Sbjct: 547 LTHVELINMK--KVTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLWG 604
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-----LLNLSQNCNLTDK 412
IT G Y +F +LR L + L+ + +K +SL +L+L+Q D
Sbjct: 605 TNITKQGLEYFTDFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQA---DDS 661
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
TL ++SG + L LN+ + I GL L+ +NLR+L L VT I+RL ++ LP
Sbjct: 662 TLAILSGASQLGQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRL-AQALPE 720
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 9/190 (4%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLE 212
L +E +N+K +TD+ + L G NL+ + ++ S + TD+G+A+L + L L+L
Sbjct: 547 LTHVELINMK---KVTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLW 603
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC---EKFSKIGSLKVLNLGFNEITDECL 269
G +T L+ + L L L QLS + ++++ + L++L L + D L
Sbjct: 604 GTNITKQGLEYFTDFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQADDSTL 663
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L G + L LNL+ I D GL +L NL ++ L+ T ++ +R+LA +L
Sbjct: 664 AILSGASQLGQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRLA--QALPEC 721
Query: 330 NLDARQITDT 339
++D ++ T
Sbjct: 722 DIDWSELKKT 731
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 115/438 (26%), Positives = 179/438 (40%), Gaps = 69/438 (15%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD+GL L+ NL+ ++ + + +D GL HL L L N IT QG++ F
Sbjct: 558 VTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLWGTN-ITKQGLEYFT 616
Query: 129 GLINLVKLDLERCTRIHGGLVNLK---GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+L L L L LK L KLE L + DS + LSG + L L
Sbjct: 617 DFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQA-DDSTLAILSGASQLGQL 675
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-ALGS--LFYLNLNRCQLS- 241
+ + + D G+ L+ + L L L PVT + L+ AL + + L + S
Sbjct: 676 NLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRLAQALPECDIDWSELKKTSTSN 735
Query: 242 -----DDGCEK-FSKIGSLKV-------------LNLGFNEITDECLV--HLKGLTNLES 280
D G +K F ++ +K +N GF+ E + H+ GLT L
Sbjct: 736 GRWTPDAGQQKFFDEVARMKATDQVVAVSQKLMEVNPGFDGKLKETIENGHVVGLTFL-- 793
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
G + + L++L S+ ++ G KL LS L L L I+++
Sbjct: 794 -----AGDHIAEIWPVRALSDLTSLVCGGNHLTHG---KLTDLSPLVGLPLTKMDISNSS 845
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
++ LT L G+ L+GA + L + L+ L + H+ DLS L
Sbjct: 846 VSDLTPLKGMKLAHLYGAHTRIKDLSPLADMP-LKVLFLWSS-------PHVSDLSPLKG 897
Query: 401 LNLSQNCNLTDKTLELISGLTG--LVSLNVSNSRITS----------------AGLRHLK 442
+ L+ N NL + +S L G L L V + + S G+ L
Sbjct: 898 MRLT-NLNLDFTQVADLSPLQGMDLTHLAVHQTHVRSLLPLSGMPLQALYCSNTGISDLS 956
Query: 443 PLK--NLRSLTLESCKVT 458
PLK L +L +E+ +V+
Sbjct: 957 PLKEAELTTLHIENTQVS 974
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+N +++D G +L+ +NL ++ E TD L HL L+ L+L I +GL
Sbjct: 553 INMKKVTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLWGTNITKQGL 612
Query: 294 VNLTGLTNLESINLSFTGISDGS---LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
T +L + L T +S L++ A L L+ L L Q D+ LA L+ + L
Sbjct: 613 EYFTDFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQADDSTLAILSGASQL 672
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
L+L I D G L +NLR+L + +T G++ +
Sbjct: 673 GQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRL 714
>gi|12581504|gb|AAG59625.1| GU1 [Trypanosoma brucei]
gi|261333153|emb|CBH16148.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 846
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 115/460 (25%), Positives = 199/460 (43%), Gaps = 91/460 (19%)
Query: 27 AFRDC-ALQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+F C LQ L L V+D +W+ + + L ++DLS ++V L L+ C L
Sbjct: 364 SFVHCRQLQQLKLSCCRRVSDVRWLAAL----TCLRTLDLSHTNVRSRWLESLRACRYLV 419
Query: 85 SLDFNFC---IQIS----------------DGGLEHLRGLSNLTSLSFRR-NNAITAQGM 124
L+ +C +++S D G ++L + L+F + + + +
Sbjct: 420 ELNVAYCRDVVEVSFLSELRLLKHLDLSGTDIGEQNLDPIGQCEGLTFLLLKDCSSVKDL 479
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L LVKLD ER + + + KLE L+ ++C+ +TD +K L GL NLK+
Sbjct: 480 HFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKCLEGLRNLKT 537
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L ++ + VT+ GI+ SL SL Y++++ C L
Sbjct: 538 LDLAGTNVTNEGIS------------------------SLPKCVSLEYVDVSECCL---- 569
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
+ +L F L+ L NL+ + D + D G LTG +L
Sbjct: 570 -----------ITHLEF----------LRPLPNLQQVVADQMNLTDIG--GLTGAPSLRR 606
Query: 305 INLSFTGI--SDGSLRKLAGLSSLKSLNLDARQITDTGLAA-LTSLTGLTHLDLFGAR-I 360
+ L+ + + G +R L L+ L+L I++ G+ + L S L HLD+ +
Sbjct: 607 VTLNESKRLGTVGEVR----LPYLQELSLRKSTISNAGIRSLLASCRSLQHLDMQHCHSV 662
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
T+ A L NLR L + +T + HI +L L +++ ++TD + +S L
Sbjct: 663 TELSA--LSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTECADITD--VNCLSAL 718
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L +++S + +T+ G++ L LR L L C+ N
Sbjct: 719 QSLEDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVTN 758
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 183/418 (43%), Gaps = 44/418 (10%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L + +++ + + +C+NL+ + + C + LE L LT LS N
Sbjct: 206 LRSLTLFATPLSNQIMSYFCECTNLERVVVDSCCGLV--SLECFAALQRLTHLSVL-NCT 262
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G+ + +L + L+ C MKL SLN L
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNC-------------MKLRSLNC-------------LGS 296
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL++L +S +++ + G+ L+ L+ L +L A ++ +S+LGSL L+L
Sbjct: 297 LRNLRTLIVSRNRIPEEGVQGLRKLRDLEVLRFSVFNRPTA-VEFISSLGSLVELDLRDN 355
Query: 239 QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ D GC F L+ L L ++D + L LT L +L+L + L +L
Sbjct: 356 WVGDAGCASFVHCRQLQQLKLSCCRRVSD--VRWLAALTCLRTLDLSHTNVRSRWLESLR 413
Query: 298 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L +N+++ + + S L+ L LK L+L I + L + GLT L L
Sbjct: 414 ACRYLVELNVAYCRDVVEVSF--LSELRLLKHLDLSGTDIGEQNLDPIGQCEGLTFL-LL 470
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+ +L + L L+ G+ DA V + L L+ LTD ++
Sbjct: 471 KDCSSVKDLHFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKC 528
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-ESCKVTANDIKRLQSRDLPNL 473
+ GL L +L+++ + +T+ G+ L +L + + E C +T + R LPNL
Sbjct: 529 LEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVSECCLITHLEFL----RPLPNL 582
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 105/430 (24%), Positives = 191/430 (44%), Gaps = 43/430 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQ----------------------ISDGGLEHLRGLS 106
+TD GL + C +LQ + + C++ I + G++ LR L
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNCMKLRSLNCLGSLRNLRTLIVSRNRIPEEGVQGLRKLR 322
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
+L L F N TA ++ + L +LV+LDL G + +L+ L + C
Sbjct: 323 DLEVLRFSVFNRPTA--VEFISSLGSLVELDLRDNWVGDAGCASFVHCRQLQQLKLSCCR 380
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+ SD++ L+ LT L++L +S + V + L+ + L LN+ C + LS
Sbjct: 381 RV--SDVRWLAALTCLRTLDLSHTNVRSRWLESLRACRYLVELNVAYCRDVVE-VSFLSE 437
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDS 285
L L +L+L+ + + + + L L L + + D L L+ L L L+ +
Sbjct: 438 LRLLKHLDLSGTDIGEQNLDPIGQCEGLTFLLLKDCSSVKD--LHFLETLRELVKLDTER 495
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
GI D + + LE ++ + + ++ L GL +LK+L+L +T+ G+++L
Sbjct: 496 TGIMDANVCQVVACKKLEFLSFRYCHLLT-DVKCLEGLRNLKTLDLAGTNVTNEGISSLP 554
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLS 404
L ++D+ + + +LR NL+ + LTD G+ L +T LN S
Sbjct: 555 KCVSLEYVDVSECCLI-THLEFLRPLPNLQQVVADQMNLTDIGGLTGAPSLRRVT-LNES 612
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIK 463
+ + L L L++ S I++AG+R L ++L+ L ++ C + ++
Sbjct: 613 KRLGTVGEV-----RLPYLQELSLRKSTISNAGIRSLLASCRSLQHLDMQHCH-SVTELS 666
Query: 464 RLQSRDLPNL 473
L LPNL
Sbjct: 667 ALS--QLPNL 674
>gi|290996013|ref|XP_002680577.1| predicted protein [Naegleria gruberi]
gi|284094198|gb|EFC47833.1| predicted protein [Naegleria gruberi]
Length = 395
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/353 (22%), Positives = 154/353 (43%), Gaps = 10/353 (2%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E + LT L+ N + +G++A L L +LD+ C G + L +L
Sbjct: 46 IEPIGKFKQLTILNISDNPIM--KGVEAIGLLKQLTELDVRYCRMGEEGSKIISKLGQLT 103
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+L+I N I K + + L L++ +K+ S ++ L++LT L++ G +
Sbjct: 104 NLDISH-NSIRSKGFKFICEMKQLIILKVQYNKLEKSSSNQIEDLKQLTKLDISGNNIDD 162
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
S+ L L L+++ LS+ G + S + L LN+ +N++ +E + + L
Sbjct: 163 EGAKSIGQLKQLTKLDISVNYLSNVGVKHLSDLQQLIYLNVSYNDVDEEVAKDIYNMKKL 222
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
LN+ + E + + +L+ + G+ + ++ L L L++ QI D
Sbjct: 223 SKLNIGGNDLNIESFSMIGKMDHLKKLEFGVVGLGNDGFEFISKLKHLTMLDISENQIND 282
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
G L+ + LT LD+ I D G + K L L + G K+I ++ L
Sbjct: 283 NGAELLSRMEHLTKLDVGFNSIGDRGIRSISMLKKLTDLNARNNEFGNEGAKYISEMMQL 342
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG------LRHLKPLK 445
T+L + +N D+ + I+ + L L + + + G +H+ LK
Sbjct: 343 TILQVDEN-KFGDEGIIAITKMKNLKKLRIFSEYMDKEGKDALLNTKHITKLK 394
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 132/289 (45%), Gaps = 26/289 (8%)
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
++ SK T + I + ++LT+LN+ P+ +++ L L L++ C++ ++G
Sbjct: 35 ELKLSKHTFNDIEPIGKFKQLTILNISDNPIMKGV-EAIGLLKQLTELDVRYCRMGEEGS 93
Query: 246 EKFSKIGSLK------------------------VLNLGFNEITDECLVHLKGLTNLESL 281
+ SK+G L +L + +N++ ++ L L L
Sbjct: 94 KIISKLGQLTNLDISHNSIRSKGFKFICEMKQLIILKVQYNKLEKSSSNQIEDLKQLTKL 153
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
++ I DEG ++ L L +++S +S+ ++ L+ L L LN+ + +
Sbjct: 154 DISGNNIDDEGAKSIGQLKQLTKLDISVNYLSNVGVKHLSDLQQLIYLNVSYNDVDEEVA 213
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
+ ++ L+ L++ G + + + +L+ LE GL + G + I L LT+L
Sbjct: 214 KDIYNMKKLSKLNIGGNDLNIESFSMIGKMDHLKKLEFGVVGLGNDGFEFISKLKHLTML 273
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
++S+N + D EL+S + L L+V + I G+R + LK L L
Sbjct: 274 DISEN-QINDNGAELLSRMEHLTKLDVGFNSIGDRGIRSISMLKKLTDL 321
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 136/320 (42%), Gaps = 27/320 (8%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L LD +C ++ + G + + L LT+L +N+I ++G K + L+ L ++
Sbjct: 78 LTELDVRYC-RMGEEGSKIISKLGQLTNLDIS-HNSIRSKGFKFICEMKQLIILKVQYNK 135
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
++ L +L L+I N I D K + L L L IS + +++ G+ +L
Sbjct: 136 LEKSSSNQIEDLKQLTKLDIS-GNNIDDEGAKSIGQLKQLTKLDISVNYLSNVGVKHLSD 194
Query: 203 LQ------------------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LQ KL+ LN+ G + + + L L
Sbjct: 195 LQQLIYLNVSYNDVDEEVAKDIYNMKKLSKLNIGGNDLNIESFSMIGKMDHLKKLEFGVV 254
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
L +DG E SK+ L +L++ N+I D L + +L L++ IGD G+ +++
Sbjct: 255 GLGNDGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTKLDVGFNSIGDRGIRSISM 314
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L L +N + + ++ + L L +D + D G+ A+T + L L +F
Sbjct: 315 LKKLTDLNARNNEFGNEGAKYISEMMQLTILQVDENKFGDEGIIAITKMKNLKKLRIFSE 374
Query: 359 RITDSGAAYLRNFKNLRSLE 378
+ G L N K++ L+
Sbjct: 375 YMDKEGKDALLNTKHITKLK 394
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 35/255 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L +D+SG+++ D G + L LD + +S+ G++HL L L L+ N
Sbjct: 148 KQLTKLDISGNNIDDEGAKSIGQLKQLTKLDISVNY-LSNVGVKHLSDLQQLIYLNVSYN 206
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL----ESLNIKWCNCITDSD 172
+ +D E I+ N+K L KL LNI+ + I D
Sbjct: 207 D------------------VDEEVAKDIY----NMKKLSKLNIGGNDLNIESFSMIGKMD 244
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+LK L+ + + G ++ L+ LT+L++ + + LS + L
Sbjct: 245 --------HLKKLEFGVVGLGNDGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTK 296
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L++ + D G S + L LN NE +E ++ + L L +D GDEG
Sbjct: 297 LDVGFNSIGDRGIRSISMLKKLTDLNARNNEFGNEGAKYISEMMQLTILQVDENKFGDEG 356
Query: 293 LVNLTGLTNLESINL 307
++ +T + NL+ + +
Sbjct: 357 IIAITKMKNLKKLRI 371
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 105/232 (45%), Gaps = 14/232 (6%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
Q L +D+S + +++ G+ HL D L L+ ++ +D E + + N+ LS +
Sbjct: 170 QLKQLTKLDISVNYLSNVGVKHLSDLQQLIYLNVSY----NDVDEEVAKDIYNMKKLS-K 224
Query: 115 RN---NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
N N + + + +L KL+ + G + L L L+I N I D+
Sbjct: 225 LNIGGNDLNIESFSMIGKMDHLKKLEFGVVGLGNDGFEFISKLKHLTMLDISE-NQINDN 283
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ LS + +L L + + + D GI + L+KLT LN +S + L
Sbjct: 284 GAELLSRMEHLTKLDVGFNSIGDRGIRSISMLKKLTDLNARNNEFGNEGAKYISEMMQLT 343
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD----ECLVHLKGLTNLE 279
L ++ + D+G +K+ +LK L + F+E D + L++ K +T L+
Sbjct: 344 ILQVDENKFGDEGIIAITKMKNLKKLRI-FSEYMDKEGKDALLNTKHITKLK 394
>gi|124004058|ref|ZP_01688905.1| Rab family protein [Microscilla marina ATCC 23134]
gi|123990637|gb|EAY30117.1| Rab family protein [Microscilla marina ATCC 23134]
Length = 1165
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 129/441 (29%), Positives = 211/441 (47%), Gaps = 60/441 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD---GGLEHLRGLSNLTSLSF 113
L ++DLS + ++D L L++ +NLQ LD +SD L L+ L L S+
Sbjct: 114 PELRAIDLSDNRISD--LKPLQNLANLQMLD------MSDNRVADLTPLQNLPGLQSIVL 165
Query: 114 RRNNAITAQGMKA----------FAGLINLVKLDLERCTRI----HGGLVNLKGLMKLES 159
+N ++ + + +L L C + H + +L L KL
Sbjct: 166 SKNKVRDLTPLQHLTGLHTLLLHYNKIGDLAPLQHLTCLTMLSLHHNKISDLAPLQKLRG 225
Query: 160 L-NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L + N D D+ PL L +L+SL + ++++D + L+ L L L+ L PVT
Sbjct: 226 LLKLDLSNNQLD-DLHPLKSLNSLQSLVLRNNQISD--LTPLQALHSLQLIVLRDNPVTD 282
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L L +L +L L+L Q+SD + SL+ ++L N I D + + L NL
Sbjct: 283 --LTPLQSLRNLQSLDLRNNQISD--LTPLQNLSSLQSIDLRHNPINDLLPL--QNLPNL 336
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
+S++L I D L L L NLESI+LS ISD L L LS+L+S++L Q+
Sbjct: 337 QSIDLKYNHIND--LAPLQNLPNLESIDLSDNQISD--LTPLQNLSNLQSIDLSNNQVN- 391
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
LA+L L L +DL +I D A L+N +L+S+++ I DL+ L
Sbjct: 392 -HLASLQYLPNLESIDLSDNQIND--LAPLQNLGDLQSIDLSNN--------QIHDLTPL 440
Query: 399 TLLNLSQNCNLTDKT---LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L ++ +L+D L + L L S+N+ N++++ L L+ L +L+++ L
Sbjct: 441 QNLPNLESIDLSDNQISDLTPLQNLGSLQSINLRNNQVSD--LSPLQALHDLQAINLSDN 498
Query: 456 KVTANDIKRLQSRDLPNLVSF 476
+++ D+ LQ LP+L S
Sbjct: 499 QIS--DLAPLQK--LPHLKSI 515
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 116/370 (31%), Positives = 175/370 (47%), Gaps = 73/370 (19%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
LL +DLS + + D L LK ++LQSL QISD L L+ L +L L R+N
Sbjct: 226 LLKLDLSNNQLDD--LHPLKSLNSLQSLVLRNN-QISD--LTPLQALHSL-QLIVLRDNP 279
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-------- 170
+T + L NL LDL R +I L L+ L L+S++++ N I D
Sbjct: 280 VT--DLTPLQSLRNLQSLDL-RNNQI-SDLTPLQNLSSLQSIDLR-HNPINDLLPLQNLP 334
Query: 171 ------------SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 217
+D+ PL L NL+S+ +S ++++D + + L LQ + L N
Sbjct: 335 NLQSIDLKYNHINDLAPLQNLPNLESIDLSDNQISDLTPLQNLSNLQSIDLSN------- 387
Query: 218 AACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+ ++ L SL YL NL LSD N+I D L L+ L
Sbjct: 388 ----NQVNHLASLQYLPNLESIDLSD-------------------NQIND--LAPLQNLG 422
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+L+S++L + I D L L L NLESI+LS ISD L L L SL+S+NL Q+
Sbjct: 423 DLQSIDLSNNQIHD--LTPLQNLPNLESIDLSDNQISD--LTPLQNLGSLQSINLRNNQV 478
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
+D L+ L +L L ++L +I+D A L+ +L+S+++ + I +
Sbjct: 479 SD--LSPLQALHDLQAINLSDNQISD--LAPLQKLPHLKSIDLRDNQIEVFPEHLITNCP 534
Query: 397 SLTLLNLSQN 406
LT L+L N
Sbjct: 535 QLTSLHLYHN 544
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 122/273 (44%), Gaps = 53/273 (19%)
Query: 57 SSLLSVDLSGSDVTDSGLI--------------HLKDCSNLQSLDFNFCIQISDGGLEHL 102
SSL S+DL + + D + H+ D + LQ+L I +SD + L
Sbjct: 312 SSLQSIDLRHNPINDLLPLQNLPNLQSIDLKYNHINDLAPLQNLPNLESIDLSDNQISDL 371
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L NL+ NL +DL H L +L+ L LES+++
Sbjct: 372 TPLQNLS----------------------NLQSIDLSNNQVNH--LASLQYLPNLESIDL 407
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I +D+ PL L +L+S+ +S +++ D + L+ L L ++L ++ L
Sbjct: 408 S-DNQI--NDLAPLQNLGDLQSIDLSNNQIHD--LTPLQNLPNLESIDLSDNQISD--LT 460
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L LGSL +NL Q+SD + L+ +NL N+I+D L L+ L +L+S++
Sbjct: 461 PLQNLGSLQSINLRNNQVSD--LSPLQALHDLQAINLSDNQISD--LAPLQKLPHLKSID 516
Query: 283 L--DSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
L + + E L+ T L S++L I
Sbjct: 517 LRDNQIEVFPEHLI--TNCPQLTSLHLYHNPIQ 547
>gi|71748370|ref|XP_823240.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832908|gb|EAN78412.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 846
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 115/460 (25%), Positives = 199/460 (43%), Gaps = 91/460 (19%)
Query: 27 AFRDC-ALQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+F C LQ L L V+D +W+ + + L ++DLS ++V L L+ C L
Sbjct: 364 SFVHCRQLQQLKLSCCRRVSDVRWLAAL----TCLRTLDLSHTNVRSRWLESLRACRYLV 419
Query: 85 SLDFNFC---IQIS----------------DGGLEHLRGLSNLTSLSFRR-NNAITAQGM 124
L+ +C +++S D G ++L + L+F + + + +
Sbjct: 420 ELNVAYCRDVVEVSFLSELRLLKHLDLSGTDIGEQNLDPIGRCEGLTFLLLKDCSSVKDL 479
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L LVKLD ER + + + KLE L+ ++C+ +TD +K L GL NLK+
Sbjct: 480 HFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKCLEGLRNLKT 537
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L ++ + VT+ GI+ SL SL Y++++ C L
Sbjct: 538 LDLAGTNVTNEGIS------------------------SLPKCVSLEYVDVSECCL---- 569
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
+ +L F L+ L NL+ + D + D G LTG +L
Sbjct: 570 -----------ITHLEF----------LRPLPNLQQVVADQMNLTDIG--GLTGAPSLRR 606
Query: 305 INLSFTGI--SDGSLRKLAGLSSLKSLNLDARQITDTGLAA-LTSLTGLTHLDLFGAR-I 360
+ L+ + + G +R L L+ L+L I++ G+ + L S L HLD+ +
Sbjct: 607 VTLNESKRLGTVGEVR----LPYLQELSLRKSTISNAGIRSLLASCRSLQHLDMQHCHSV 662
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
T+ A L NLR L + +T + HI +L L +++ ++TD + +S L
Sbjct: 663 TELSA--LSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTECADITD--VNCLSAL 718
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L +++S + +T+ G++ L LR L L C+ N
Sbjct: 719 QSLEDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVTN 758
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 183/418 (43%), Gaps = 44/418 (10%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L + +++ + + +C+NL+ + + C + LE L LT LS N
Sbjct: 206 LRSLTLFATPLSNQIMSYFCECTNLERVVVDSCCGLV--SLECFAALQRLTHLSVL-NCT 262
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G+ + +L + L+ C MKL SLN L
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNC-------------MKLRSLNC-------------LGS 296
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL++L +S +++ + G+ L+ L+ L +L A ++ +S+LGSL L+L
Sbjct: 297 LRNLRTLIVSRNRIPEEGVQGLRKLRDLEVLRFSVFNRPTA-VEFISSLGSLVELDLRDN 355
Query: 239 QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ D GC F L+ L L ++D + L LT L +L+L + L +L
Sbjct: 356 WVGDAGCASFVHCRQLQQLKLSCCRRVSD--VRWLAALTCLRTLDLSHTNVRSRWLESLR 413
Query: 298 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L +N+++ + + S L+ L LK L+L I + L + GLT L L
Sbjct: 414 ACRYLVELNVAYCRDVVEVSF--LSELRLLKHLDLSGTDIGEQNLDPIGRCEGLTFL-LL 470
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+ +L + L L+ G+ DA V + L L+ LTD ++
Sbjct: 471 KDCSSVKDLHFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKC 528
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-ESCKVTANDIKRLQSRDLPNL 473
+ GL L +L+++ + +T+ G+ L +L + + E C +T + R LPNL
Sbjct: 529 LEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVSECCLITHLEFL----RPLPNL 582
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 105/430 (24%), Positives = 191/430 (44%), Gaps = 43/430 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQ----------------------ISDGGLEHLRGLS 106
+TD GL + C +LQ + + C++ I + G++ LR L
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNCMKLRSLNCLGSLRNLRTLIVSRNRIPEEGVQGLRKLR 322
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
+L L F N TA ++ + L +LV+LDL G + +L+ L + C
Sbjct: 323 DLEVLRFSVFNRPTA--VEFISSLGSLVELDLRDNWVGDAGCASFVHCRQLQQLKLSCCR 380
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+ SD++ L+ LT L++L +S + V + L+ + L LN+ C + LS
Sbjct: 381 RV--SDVRWLAALTCLRTLDLSHTNVRSRWLESLRACRYLVELNVAYCRDVVE-VSFLSE 437
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDS 285
L L +L+L+ + + + + L L L + + D L L+ L L L+ +
Sbjct: 438 LRLLKHLDLSGTDIGEQNLDPIGRCEGLTFLLLKDCSSVKD--LHFLETLRELVKLDTER 495
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
GI D + + LE ++ + + ++ L GL +LK+L+L +T+ G+++L
Sbjct: 496 TGIMDANVCQVVACKKLEFLSFRYCHLLT-DVKCLEGLRNLKTLDLAGTNVTNEGISSLP 554
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLS 404
L ++D+ + + +LR NL+ + LTD G+ L +T LN S
Sbjct: 555 KCVSLEYVDVSECCLI-THLEFLRPLPNLQQVVADQMNLTDIGGLTGAPSLRRVT-LNES 612
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIK 463
+ + L L L++ S I++AG+R L ++L+ L ++ C + ++
Sbjct: 613 KRLGTVGEV-----RLPYLQELSLRKSTISNAGIRSLLASCRSLQHLDMQHCH-SVTELS 666
Query: 464 RLQSRDLPNL 473
L LPNL
Sbjct: 667 ALS--QLPNL 674
>gi|350417674|ref|XP_003491538.1| PREDICTED: F-box/LRR-repeat protein 14-like [Bombus impatiens]
Length = 485
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 137/256 (53%), Gaps = 28/256 (10%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T+ GL+ + + L+ LD C Q+SD G+ HL G++ ++
Sbjct: 246 NITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------ES 288
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G + L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 289 AGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRE 348
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQL 240
L + SC ++D G+AYL +G +++ L++ C A + L +L L+L+ CQ+
Sbjct: 349 LNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQI 408
Query: 241 SDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNL 296
SD+G K +K + L+ LN+G + +TD+ L + + + +L+ ++L C I GL +
Sbjct: 409 SDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERI 468
Query: 297 TGLTNLESINLSFTGI 312
L L ++NL +
Sbjct: 469 MKLPQLSTLNLGLWHV 484
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 159/325 (48%), Gaps = 68/325 (20%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGL------EH----------------------LRGLSNL 108
LK NL++L+ + C I+D GL E+ ++ L NL
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNL 236
Query: 109 TSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLE 158
L IT G+ A L L +LDL C ++ G+ +L G+ + LE
Sbjct: 237 EHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLALE 296
Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+++ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 297 HLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC-- 354
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KG 274
D++S +G + L++ G S+I SL V F ++I D+ LVH+ +G
Sbjct: 355 -----DNISDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQG 394
Query: 275 LTNLESLNLDSCGIGDEGLVNLTG-LTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNL 331
L NL+ L+L +C I DEG+ + L +LE++N+ + ++D L +A + LK ++L
Sbjct: 395 LFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDL 454
Query: 332 -DARQITDTGLAALTSLTGLTHLDL 355
+I+ GL + L L+ L+L
Sbjct: 455 YGCTRISTNGLERIMKLPQLSTLNL 479
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 153/305 (50%), Gaps = 54/305 (17%)
Query: 151 LKGLMKLESLNIKWCNCITD-------------------------SDM---KPLSGLTNL 182
LKG+ LE+LN+ C ITD SD+ + + L NL
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNL 236
Query: 183 KSLQI-SCSKVTDSG---IAYLKGLQKLTLLNLEGCPVTA-------ACLDSLSALG--S 229
+ L++ C +T+ G IA+ L+KL L+L C + A ++ SA G +
Sbjct: 237 EHLELGGCCNITNGGLLCIAW--NLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLA 294
Query: 230 LFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC 286
L +L+L CQ D + IG +LK +NL F ITD L HL +++L LNL SC
Sbjct: 295 LEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC 354
Query: 287 -GIGDEGLVNLT-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLA 342
I D G+ L G + + S+++SF I D +L ++ GL +LK L+L A QI+D G+
Sbjct: 355 DNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGIC 414
Query: 343 ALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSL 398
+ +L L L++ +R+TD G + + K+L+ +++ G ++ G++ I L L
Sbjct: 415 KIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQL 474
Query: 399 TLLNL 403
+ LNL
Sbjct: 475 STLNL 479
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 39/247 (15%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + S G +L LS D ++D L H+ +
Sbjct: 267 LRSCWQVSDLGIAHLAGVNRE------SAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 320
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+S++ +FC+ I+D GL+HL +S+L L+ R + I+ GM A
Sbjct: 321 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLA-------------- 366
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
+G ++ SL++ +C+ I D + +S GL NLK L +S +++D GI +
Sbjct: 367 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 417
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVL 257
K L L LN+ C +T L +++ ++ L ++L C ++S +G E+ K+ L L
Sbjct: 418 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 477
Query: 258 NLGFNEI 264
NLG +
Sbjct: 478 NLGLWHV 484
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 38/200 (19%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
LKG+ NLE+LNL C I D GL+N +F ++L LN
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLIN------------AFC----------QEYATLIELN 214
Query: 331 LD-ARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLR-NFKNLRSLEICG-GGLT 385
L +Q++D L + L L HL+L G IT+ G + N K L+ L++ ++
Sbjct: 215 LSLCKQVSDISLGRIVQYLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVS 274
Query: 386 DAGVKHIKDLS------SLTLLNLS-QNCN-LTDKTLELIS-GLTGLVSLNVSNSR-ITS 435
D G+ H+ ++ +L L +LS Q+C L+D+ L +S GLT L S+N+S IT
Sbjct: 275 DLGIAHLAGVNRESAGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITD 334
Query: 436 AGLRHLKPLKNLRSLTLESC 455
+GL+HL + +LR L L SC
Sbjct: 335 SGLKHLAKMSSLRELNLRSC 354
>gi|158300725|ref|XP_320584.4| AGAP011947-PA [Anopheles gambiae str. PEST]
gi|157013299|gb|EAA00258.4| AGAP011947-PA [Anopheles gambiae str. PEST]
Length = 1233
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 111/432 (25%), Positives = 188/432 (43%), Gaps = 40/432 (9%)
Query: 48 WMDVIASQG-SSLLSVDLSGSDVTDSGLI--HLKDCSNLQSL--DFNFCIQISDGGLEHL 102
W+ + G +L ++ LSG+ +TD+G+I +KD NLQ L D N ++S+G L
Sbjct: 226 WVHLRTFVGLPALKTLQLSGNKITDAGMIGRAVKDIHNLQVLRMDRNMISKLSEGSFVDL 285
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF--AGLINLVKLDLERCTRIH--------GGLVNLK 152
L L + +N IT AF + LV L+ R+H G V +
Sbjct: 286 PSLKEL----YLNDNGITEIFHGAFHRTPSLKLVHLENNYLRRVHPESFLQASGSGVEMM 341
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L + E ++ + D+ L L+ L +S +K+ L+G L L L
Sbjct: 342 HLQQNEIGRVEELRSLLDA-------LPMLRFLDLSHNKLEAIPFGALRGHGTLEQLYLN 394
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ D+ A+ L L L L D F + LK +++ +N L
Sbjct: 395 QNRIRMIERDAFMAMPGLRELRLQNNSLHDQLPMPFWNLPGLKGIDISYNSFRRMDPNLL 454
Query: 273 KGLTNLESLNL--DSCGIGDEGLVNLTGLTNLESINLSFTGIS---DGSLRKLAGLSSLK 327
G+ +L L++ ++ + D G T + LE++N+SF +S + R L + L
Sbjct: 455 VGVPSLRRLDISGNTLSVIDAGAFTHTPM--LETVNISFNELSLIHSATFRDLNHMFELD 512
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
+ N ++ GL L H ++ + A+ L + NLR L+I LT
Sbjct: 513 AGNNKLQEFI-PGLPVAVERVNL-HGNMITQLPPPTTASQLWDLPNLRMLDISANQLTRL 570
Query: 388 GVKHIKDLSSLTLLNLSQN--CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
K L +L+L++N ++ D +L SGL+ L LN+ ++R+ + R PL+
Sbjct: 571 PRAVFKPTPQLRVLSLARNQLQSVDDGSL---SGLSRLEILNLQDNRVLALHERCFSPLE 627
Query: 446 NLRSLTLESCKV 457
NLR L L+ ++
Sbjct: 628 NLRELNLQGNRI 639
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 142/324 (43%), Gaps = 41/324 (12%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L NL+ L IS +++T A K +L +L+L + + SLS L L LNL
Sbjct: 551 LWDLPNLRMLDISANQLTRLPRAVFKPTPQLRVLSLARNQLQSVDDGSLSGLSRLEILNL 610
Query: 236 --NRCQLSDDGCEKFSKIGSLKVLNLGFNEI---TDECL------------------VHL 272
NR + C FS + +L+ LNL N I D L +
Sbjct: 611 QDNRVLALHERC--FSPLENLRELNLQGNRIEVLVDNLLDSNALLEQFDASRNSIVEISP 668
Query: 273 KGLTN---LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
K N L++L+L S + E +L+GL L +++SF +++ S L +L+ L
Sbjct: 669 KAFRNSRSLQTLDLSSNQL-RELPESLSGLAELRELDVSFNQLTELSPNVLVSWRNLEEL 727
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+ ++ +L +L L +LDL +T LRN L+ L + L++
Sbjct: 728 KVSNNKVNQLHQGSLRNLPLLQYLDLSSNELTLLEHGSLRNLPELQELVLADNKLSELKE 787
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR---ITSAGLRHLKPLKN 446
+ +DL +L ++L QN NL + +V LN+S ++ + S GLR ++
Sbjct: 788 RVFEDLPNLQAVHLQQN-NLRYISPYSFFRSPSIVYLNLSANQFRSLDSVGLRSVR---- 842
Query: 447 LRSLTLESCKVTANDIKRLQSRDL 470
LE +T N I+++ L
Sbjct: 843 ----NLEVLDLTGNSIRKITPSPL 862
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 120/293 (40%), Gaps = 52/293 (17%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN + + + FA L N+++L L H GL E L+ W N + S ++
Sbjct: 78 NNFLPSLPGRTFAPL-NILRLMLR-----HNGL---------ERLSNGWLNDLDKSLVEI 122
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
NL+S+ + L GL+KL + ++ L S L L Y+N+
Sbjct: 123 FIVERNLRSIPVDS----------LTGLRKLEAVTIQS--ENLKRLPDFSGLPKLRYINV 170
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
L + + F + SL+ L H+ G ++L L + GL N
Sbjct: 171 QSGSLIELAPQYFRDLASLETL-------------HVTGSSSLNRL--------EAGLFN 209
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHL 353
L L+ INLS GIS LR GL +LK+L L +ITD G+ A+ + L L
Sbjct: 210 --DLPKLQLINLSENGISWVHLRTFVGLPALKTLQLSGNKITDAGMIGRAVKDIHNLQVL 267
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ I+ + +L+ L + G+T+ SL L++L N
Sbjct: 268 RMDRNMISKLSEGSFVDLPSLKELYLNDNGITEIFHGAFHRTPSLKLVHLENN 320
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 133/311 (42%), Gaps = 20/311 (6%)
Query: 15 VYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
++ RC + LE R+ LQ + + +D + + L D S + + +
Sbjct: 618 LHERCFS--PLENLRELNLQGNRI-------EVLVDNLLDSNALLEQFDASRNSIVEISP 668
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL--SFRRNNAITAQGMKAFAGLIN 132
++ +LQ+LD + Q+ + E L GL+ L L SF + ++ + ++ L
Sbjct: 669 KAFRNSRSLQTLDLS-SNQLRELP-ESLSGLAELRELDVSFNQLTELSPNVLVSWRNLEE 726
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
L K+ + ++H G +L+ L L+ L++ N +T + L L L+ L ++ +K+
Sbjct: 727 L-KVSNNKVNQLHQG--SLRNLPLLQYLDLS-SNELTLLEHGSLRNLPELQELVLADNKL 782
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
++ + L L ++L+ + S S+ YLNL+ Q +
Sbjct: 783 SELKERVFEDLPNLQAVHLQQNNLRYISPYSFFRSPSIVYLNLSANQFRSLDSVGLRSVR 842
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLTNLESINLSF 309
+L+VL+L N I L+GL L L LD+ CGI E + L L N
Sbjct: 843 NLEVLDLTGNSIRKITPSPLRGLDWLVELKLDNNKICGIQGEPFATMPRLRVLSMRNNQM 902
Query: 310 TGISDGSLRKL 320
+ + + R L
Sbjct: 903 SRVPEPIFRSL 913
>gi|218186277|gb|EEC68704.1| hypothetical protein OsI_37183 [Oryza sativa Indica Group]
Length = 497
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 134/505 (26%), Positives = 227/505 (44%), Gaps = 93/505 (18%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT---------------------- 70
L++L L GV +D++A + + L +DLS + +
Sbjct: 13 LRELSLKWCIGVTHLGLDLLALKCNKLNILDLSYTMIVKKCFPAIMKLQNLQVLLLVGCN 72
Query: 71 ---DSGLIHL-KDCS-NLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNNAITAQGM 124
D L L ++CS +LQ LD + ++ G L ++ + NL L+ + +T
Sbjct: 73 GIDDDALTSLDQECSKSLQVLDMSNSYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMS 132
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMK-PLSGLTNL 182
+F + L KL L+ C + GL ++ K + L L++ C+ +TD+D+ + L NL
Sbjct: 133 SSFEMIHKLQKLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNL 192
Query: 183 KSLQISCS-KVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-- 238
L ++C K+TD +A + L L +E C + ++ L +G RC
Sbjct: 193 LKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSS--KGLQLIG-------RRCTH 243
Query: 239 ---------QLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGI 288
L D+G + S L L +G ITDE L H+ LTN SL+ S I
Sbjct: 244 LEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVPRLTN--SLSFRSGAI 301
Query: 289 GDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAAL- 344
DEG+ ++ G LESIN+S+ T ++D SLR L+ L +L + ++ GL+ +
Sbjct: 302 SDEGVTHIAQGCPMLESINMSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIA 361
Query: 345 TSLTGLTHLDLFGA-RITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
T L+ LD+ I D G +L F NLR + + +TD G L++
Sbjct: 362 TGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIG-----------LIS 410
Query: 403 LSQNCNLTDKTLELISGLT--GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
LS C L + T+ ++G+T GL+ + + GLR +K + +S+ V ++
Sbjct: 411 LSSICGLQNMTIVHLAGVTPNGLI------AALMVCGLRKVKLHEAFKSM------VPSH 458
Query: 461 DIKRLQSR-------DLPNLVSFRP 478
+K +++R + P V+ P
Sbjct: 459 MLKVVEARGCLFQWINKPYQVAVEP 483
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 162/389 (41%), Gaps = 65/389 (16%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
C +L+ L +CI ++ GL+ L +L + N LDL
Sbjct: 10 CPDLRELSLKWCIGVTHLGLD-------LLALKCNKLNI-----------------LDLS 45
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDS 195
+ + L L+ L + CN I D + L + KSLQ+ + VT
Sbjct: 46 YTMIVKKCFPAIMKLQNLQVLLLVGCNGIDDDALTSLDQECS-KSLQVLDMSNSYNVTHV 104
Query: 196 GI-AYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IG 252
G+ + +K + L LNL C PVT + S + L L L+ CQ DDG + K
Sbjct: 105 GVLSIVKAMPNLLELNLSYCSPVTPSMSSSFEMIHKLQKLKLDGCQFMDDGLKSIGKSCV 164
Query: 253 SLKVLNLG-FNEITDECLVH-LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLES-INLS 308
SL+ L+L + +TD L + L NL L++ C I D L +T T+ S I+L
Sbjct: 165 SLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAIT--TSCPSLISLR 222
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITD-------------TGLAALTSLTGLTHLDL 355
S L S K L L R+ T GL AL+ + L+ L +
Sbjct: 223 MESCS---------LVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALSGCSKLSSLKI 273
Query: 356 -FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKT 413
RITD G ++ N SL G ++D GV HI + L +N+S LTD +
Sbjct: 274 GICLRITDEGLRHVPRLTN--SLSFRSGAISDEGVTHIAQGCPMLESINMSYCTKLTDCS 331
Query: 414 LELISGLTGLVSLNVSN-SRITSAGLRHL 441
L +S L +L + ++SAGL +
Sbjct: 332 LRSLSKCIKLNTLEIRGCPMVSSAGLSEI 360
>gi|340728038|ref|XP_003402339.1| PREDICTED: f-box/LRR-repeat protein 14-like [Bombus terrestris]
Length = 485
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 137/256 (53%), Gaps = 28/256 (10%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T+ GL+ + + L+ LD C Q+SD G+ HL G++ ++
Sbjct: 246 NITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------ES 288
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G + L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 289 AGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRE 348
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQL 240
L + SC ++D G+AYL +G +++ L++ C A + L +L L+L+ CQ+
Sbjct: 349 LNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQI 408
Query: 241 SDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNL 296
SD+G K +K + L+ LN+G + +TD+ L + + + +L+ ++L C I GL +
Sbjct: 409 SDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERI 468
Query: 297 TGLTNLESINLSFTGI 312
L L ++NL +
Sbjct: 469 MKLPQLSTLNLGLWHV 484
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 159/325 (48%), Gaps = 68/325 (20%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGL------EH----------------------LRGLSNL 108
LK NL++L+ + C I+D GL E+ ++ L NL
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNL 236
Query: 109 TSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLE 158
L IT G+ A L L +LDL C ++ G+ +L G+ + LE
Sbjct: 237 EHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLALE 296
Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+++ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 297 HLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC-- 354
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KG 274
D++S +G + L++ G S+I SL V F ++I D+ LVH+ +G
Sbjct: 355 -----DNISDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQG 394
Query: 275 LTNLESLNLDSCGIGDEGLVNLTG-LTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNL 331
L NL+ L+L +C I DEG+ + L +LE++N+ + ++D L +A + LK ++L
Sbjct: 395 LFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDL 454
Query: 332 DA-RQITDTGLAALTSLTGLTHLDL 355
+I+ GL + L L+ L+L
Sbjct: 455 YGCTRISTNGLERIMKLPQLSTLNL 479
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 153/305 (50%), Gaps = 54/305 (17%)
Query: 151 LKGLMKLESLNIKWCNCITD-------------------------SDM---KPLSGLTNL 182
LKG+ LE+LN+ C ITD SD+ + + L NL
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNL 236
Query: 183 KSLQI-SCSKVTDSG---IAYLKGLQKLTLLNLEGCPVTA-------ACLDSLSALG--S 229
+ L++ C +T+ G IA+ L+KL L+L C + A ++ SA G +
Sbjct: 237 EHLELGGCCNITNGGLLCIAW--NLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLA 294
Query: 230 LFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC 286
L +L+L CQ D + IG +LK +NL F ITD L HL +++L LNL SC
Sbjct: 295 LEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC 354
Query: 287 -GIGDEGLVNLT-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLA 342
I D G+ L G + + S+++SF I D +L ++ GL +LK L+L A QI+D G+
Sbjct: 355 DNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGIC 414
Query: 343 ALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSL 398
+ +L L L++ +R+TD G + + K+L+ +++ G ++ G++ I L L
Sbjct: 415 KIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQL 474
Query: 399 TLLNL 403
+ LNL
Sbjct: 475 STLNL 479
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 39/247 (15%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + S G +L LS D ++D L H+ +
Sbjct: 267 LRSCWQVSDLGIAHLAGVNRE------SAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 320
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+S++ +FC+ I+D GL+HL +S+L L+ R + I+ GM A
Sbjct: 321 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLA-------------- 366
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
+G ++ SL++ +C+ I D + +S GL NLK L +S +++D GI +
Sbjct: 367 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 417
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVL 257
K L L LN+ C +T L +++ ++ L ++L C ++S +G E+ K+ L L
Sbjct: 418 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 477
Query: 258 NLGFNEI 264
NLG +
Sbjct: 478 NLGLWHV 484
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 38/200 (19%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
LKG+ NLE+LNL C I D GL+N +F ++L LN
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLIN------------AFC----------QEYATLIELN 214
Query: 331 LD-ARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLR-NFKNLRSLEICG-GGLT 385
L +Q++D L + L L HL+L G IT+ G + N K L+ L++ ++
Sbjct: 215 LSLCKQVSDISLGRIVQYLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVS 274
Query: 386 DAGVKHIKDLS------SLTLLNLS-QNCN-LTDKTLELIS-GLTGLVSLNVSNSR-ITS 435
D G+ H+ ++ +L L +LS Q+C L+D+ L +S GLT L S+N+S IT
Sbjct: 275 DLGIAHLAGVNRESAGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITD 334
Query: 436 AGLRHLKPLKNLRSLTLESC 455
+GL+HL + +LR L L SC
Sbjct: 335 SGLKHLAKMSSLRELNLRSC 354
>gi|222616488|gb|EEE52620.1| hypothetical protein OsJ_34957 [Oryza sativa Japonica Group]
Length = 631
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 131/488 (26%), Positives = 222/488 (45%), Gaps = 86/488 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT---------------------- 70
L++L L GV +D++A + + L +DLS + +
Sbjct: 147 LRELSLKWCIGVTHLGLDLLALKCNKLNILDLSYTMIVKKCFPAIMKLQNLQVLLLVGCN 206
Query: 71 ---DSGLIHL-KDCS-NLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNNAITAQGM 124
D L L ++CS +LQ LD + ++ G L ++ + NL L+ + +T
Sbjct: 207 GIDDDALTSLDQECSKSLQVLDMSNSYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMS 266
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMK-PLSGLTNL 182
+F + L KL L+ C + GL ++ K + L L++ C+ +TD+D+ + L NL
Sbjct: 267 SSFEMIHKLQKLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNL 326
Query: 183 KSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-- 238
L ++ C K+TD +A + L L +E C + ++ L +G RC
Sbjct: 327 LKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSS--KGLQLIG-------RRCTH 377
Query: 239 ---------QLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGI 288
L D+G + S L L +G ITDE L H+ LTN SL+ S I
Sbjct: 378 LEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVPRLTN--SLSFRSGAI 435
Query: 289 GDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL- 344
DEG+ ++ G LESIN+S+ T ++D SLR L+ L +L + ++ GL+ +
Sbjct: 436 SDEGVTHIAQGCPMLESINMSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIA 495
Query: 345 TSLTGLTHLDLFGA-RITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
T L+ LD+ I D G +L F NLR + + +TD G L++
Sbjct: 496 TGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIG-----------LIS 544
Query: 403 LSQNCNLTDKTLELISGLT--GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
LS C L + T+ ++G+T GL+ + + GLR +K + +S+ V ++
Sbjct: 545 LSSICGLQNMTIVHLAGVTPNGLI------AALMVCGLRKVKLHEAFKSM------VPSH 592
Query: 461 DIKRLQSR 468
+K +++R
Sbjct: 593 MLKVVEAR 600
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 113/401 (28%), Positives = 168/401 (41%), Gaps = 66/401 (16%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD GL + C +L+ L +CI ++ GL+ L +L + N
Sbjct: 132 ITDMGLGCIAVGCPDLRELSLKWCIGVTHLGLD-------LLALKCNKLNI--------- 175
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LDL + + L L+ L + CN I D + L + KSLQ+
Sbjct: 176 --------LDLSYTMIVKKCFPAIMKLQNLQVLLLVGCNGIDDDALTSLDQECS-KSLQV 226
Query: 188 ----SCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLS 241
+ VT G+ + +K + L LNL C PVT + S + L L L+ CQ
Sbjct: 227 LDMSNSYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMSSSFEMIHKLQKLKLDGCQFM 286
Query: 242 DDGCEKFSK-IGSLKVLNLG-FNEITDECLVH-LKGLTNLESLNLDSC-GIGDEGLVNLT 297
DDG + K SL+ L+L + +TD L + L NL L++ C I D L +T
Sbjct: 287 DDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAIT 346
Query: 298 GLTNLES-INLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-------------TGLAA 343
T+ S I+L S L S K L L R+ T GL A
Sbjct: 347 --TSCPSLISLRMESCS---------LVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKA 395
Query: 344 LTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLL 401
L+ + L+ L + RITD G ++ N SL G ++D GV HI + L +
Sbjct: 396 LSGCSKLSSLKIGICLRITDEGLRHVPRLTN--SLSFRSGAISDEGVTHIAQGCPMLESI 453
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 441
N+S LTD +L +S L +L + ++SAGL +
Sbjct: 454 NMSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEI 494
>gi|397781344|ref|YP_006545817.1| Internalin-A [Methanoculleus bourgensis MS2]
gi|396939846|emb|CCJ37101.1| Internalin-A [Methanoculleus bourgensis MS2]
Length = 2759
Score = 79.3 bits (194), Expect = 4e-12, Method: Composition-based stats.
Identities = 104/358 (29%), Positives = 156/358 (43%), Gaps = 87/358 (24%)
Query: 137 DLERCTRIHG---GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
D+ TR+ G+ +L GL +L + + SD+ PL+GLTNL++L + ++V+
Sbjct: 1506 DMATLTRLSAAGRGIRDLSGLEYAVNLQTLYISNNQISDLSPLAGLTNLQTLWLQDNQVS 1565
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
D L L+ L +L L LN+ Q+ D + + +
Sbjct: 1566 D--------------------------LSPLAGLTNLQRLWLNQNQIRD--VSPLAGLTN 1597
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
L+ L L N+I+D L L GLTNL + L I D L L GLTNL + L IS
Sbjct: 1598 LRELLLAVNQISD--LSPLAGLTNLGYVQLYRNQISD--LSPLAGLTNLGYVQLYRNQIS 1653
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
D L LAGL++L L++ QI+D L+ L SLT L LD+ +I+D
Sbjct: 1654 D--LSPLAGLTNLYFLDISYNQISD--LSPLASLTNLYFLDISYNQISD----------- 1698
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
+ + L+ L+ L+L N ++D IS L GL++L V N +
Sbjct: 1699 ---------------ISPLAGLTRLSRLSLDNN-QISD-----ISPLAGLINLYVLN--L 1735
Query: 434 TSAGLRHLKPLK------------NLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
+R + PL L L NDI+ LQSR + V + P+
Sbjct: 1736 NYNQIRDISPLVANSGLAGDDVYLQYNYLDLTPGSAAMNDIQTLQSRGV--YVVYEPQ 1791
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 36/150 (24%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QISD L L GL+NL + RN + AGL NL LD+
Sbjct: 1629 QISD--LSPLAGLTNLGYVQLYRNQI---SDLSPLAGLTNLYFLDISY------------ 1671
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
N I SD+ PL+ LTNL L IS ++++D I+ L GL +L+ L+L+
Sbjct: 1672 -------------NQI--SDLSPLASLTNLYFLDISYNQISD--ISPLAGLTRLSRLSLD 1714
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
++ + L+ L +L+ LNLN Q+ D
Sbjct: 1715 NNQISD--ISPLAGLINLYVLNLNYNQIRD 1742
Score = 46.2 bits (108), Expect = 0.033, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 122 QGMKAFAGL---INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+G++ +GL +NL L L++ +I L L GL L++L++ W N I SD+ PL+G
Sbjct: 726 RGIRDLSGLEYAVNLQHLYLQQNRQI-SDLGPLAGLTDLQTLDL-WNNQI--SDLSPLAG 781
Query: 179 LTNLKSLQISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
LTNL L + ++++D G +A L LQ+L L + + + L+ L +L+ L L
Sbjct: 782 LTNLSVLLLGSNQISDIGPLAGLTDLQRLHLYDNQ-----IRDIGPLAGLTNLWELRLYN 836
Query: 238 CQLSDDG 244
Q+ D G
Sbjct: 837 NQIRDIG 843
Score = 45.8 bits (107), Expect = 0.042, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L GLT+L++++L ISD L LAGL++L L L + QI+D G L LT L L L
Sbjct: 757 LAGLTDLQTLDLWNNQISD--LSPLAGLTNLSVLLLGSNQISDIG--PLAGLTDLQRLHL 812
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
+ +I D G L NL L + + D G
Sbjct: 813 YDNQIRDIGP--LAGLTNLWELRLYNNQIRDIG 843
Score = 39.3 bits (90), Expect = 4.6, Method: Composition-based stats.
Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 31/192 (16%)
Query: 292 GLVNLTGL---TNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
G+ +L+GL NL+ + L ISD L LAGL+ L++L+L QI+D L+ L L
Sbjct: 727 GIRDLSGLEYAVNLQHLYLQQNRQISD--LGPLAGLTDLQTLDLWNNQISD--LSPLAGL 782
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
T L+ L L +I+D G L +L+ L L D ++ I L+ LT L
Sbjct: 783 TNLSVLLLGSNQISDIGP--LAGLTDLQRLH-----LYDNQIRDIGPLAGLTNL---WEL 832
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
L + + I L V+NS + S +L+ L L NDI+ LQS
Sbjct: 833 RLYNNQIRDIGPL-------VANSGLGSGDEVYLQ----YNYLDLTPGSADMNDIQTLQS 881
Query: 468 RDLPNLVSFRPE 479
R + V++ P+
Sbjct: 882 RGV--YVAYEPQ 891
>gi|220932817|ref|YP_002509725.1| hypothetical protein Hore_19830 [Halothermothrix orenii H 168]
gi|219994127|gb|ACL70730.1| leucine-rich repeat protein [Halothermothrix orenii H 168]
Length = 531
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 141/486 (29%), Positives = 223/486 (45%), Gaps = 92/486 (18%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
LTE S+ +FR + + G +N K + + G + +S D+T L HL D
Sbjct: 66 LTEFSIPSFRHYEINSIK-GLEAFLNIKTLRI----GPNYIS------DLT--PLAHLTD 112
Query: 80 CSNLQSLDFNFCIQISD----GGLEHLRGLSNLTSLSFRR---NNAITAQGMKAFAGLIN 132
L + F I D G L+ LR L +++ + + ++ + L
Sbjct: 113 LERL----YIFENHIEDLSPLGKLKELRELIIRGLPPYKKGLPSGKYSGHYIEDISPLAG 168
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKL---ESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
LVKL+ + + H + NL+ L +L ++LN+ + N I SD+KPL+ LT L L +
Sbjct: 169 LVKLEYLKLS--HQKISNLETLTQLPNLKTLNVAY-NSI--SDLKPLTALTGLSHLDLEA 223
Query: 190 SKVTDSGIAYLKGLQKLTLLNL--------------EGCPVTAACLDSLSALGSLFYL-N 234
+ + D I+ L+GL+KLT LNL EG V + L + SL L N
Sbjct: 224 NNIKD--ISPLRGLKKLTYLNLIRNELTGVKHLSSLEGLQVLLLSGNDLRNIASLTRLVN 281
Query: 235 LNRCQLSDDG---CEKFSKIGSLKVLNLGFNEITD-----EC---------------LVH 271
L + +SD+ + LK LN+ N I D EC +
Sbjct: 282 LEKLDISDNNISVAPGLKEFKGLKELNISGNPIDDINFISECRKLERLLAFNCEIRDISP 341
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L+G +L+ L L + I D + L GL LE ++LS I + S+ ++GL+ LK L+L
Sbjct: 342 LRGHNSLKELFLHNNRITD--ISPLEGLNTLERLDLSGNSIENVSV--ISGLNKLKYLDL 397
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+ +T + L L L +L+L RI S L+ NL++L +
Sbjct: 398 EGCGLT--AIEFLKDLGSLEYLELENNRI--SQIEPLKKHINLKTLVLDNN--------Q 445
Query: 392 IKDLSSL-TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
IKD+S+L L+NL + +L D +E I LTGL L V I+ +R++KPL L +L
Sbjct: 446 IKDISTLGELMNL-KVLSLNDNQIENIDSLTGLNQLEV--LYISGNRIRNIKPLLKLNNL 502
Query: 451 TLESCK 456
++ + K
Sbjct: 503 SVVAIK 508
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 103/335 (30%), Positives = 163/335 (48%), Gaps = 45/335 (13%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLK 201
H + ++KGL LNIK + SD+ PL+ LT+L+ L I + + D S + LK
Sbjct: 76 HYEINSIKGLEAF--LNIKTLRIGPNYISDLTPLAHLTDLERLYIFENHIEDLSPLGKLK 133
Query: 202 GLQKLTLLNL----EGCP---VTAACLDSLSALGSLF---YLNLNRCQLSDDGCEKFSKI 251
L++L + L +G P + ++ +S L L YL L+ ++S+ E +++
Sbjct: 134 ELRELIIRGLPPYKKGLPSGKYSGHYIEDISPLAGLVKLEYLKLSHQKISN--LETLTQL 191
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL---S 308
+LK LN+ +N I+D L L LT L L+L++ I D + L GL L +NL
Sbjct: 192 PNLKTLNVAYNSISD--LKPLTALTGLSHLDLEANNIKD--ISPLRGLKKLTYLNLIRNE 247
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
TG+ + L+ L L+ L L + + +A+LT L L LD+ I S A L
Sbjct: 248 LTGV-----KHLSSLEGLQVLLLSGNDLRN--IASLTRLVNLEKLDISDNNI--SVAPGL 298
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+ FK L+ L I G + D + I + L L L+ NC + D + + G L L +
Sbjct: 299 KEFKGLKELNISGNPIDD--INFISECRKLERL-LAFNCEIRD--ISPLRGHNSLKELFL 353
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
N+RIT + PL+ L TLE ++ N I+
Sbjct: 354 HNNRITD-----ISPLEGLN--TLERLDLSGNSIE 381
>gi|290989752|ref|XP_002677501.1| predicted protein [Naegleria gruberi]
gi|284091109|gb|EFC44757.1| predicted protein [Naegleria gruberi]
Length = 340
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 134/291 (46%), Gaps = 33/291 (11%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
G+ +L + NL L N +I D G E + G+ LT L N+ IT +G K + L
Sbjct: 47 GIKYLGNLMNLSELYINSN-EIGDNGAEDISGMKQLTKLDVSSND-ITTKGAKHISKLNK 104
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM----------KPLSGLTNL 182
LV L +E +++ +G+ + N +T+ D+ K +S L+ L
Sbjct: 105 LVSLKMEE------NMIDAQGIKYI----TDQLNQLTELDIGSNDLGVLGAKAVSELSQL 154
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
SL I + + + G AY+ L LT L + + + + L L L ++ L D
Sbjct: 155 TSLSIENNNLLNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLD 214
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNL 302
+G + S++ +L VL++ NE+TDE + + L L++L +D I DEG+ ++ GL L
Sbjct: 215 EGAKLISELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQL 274
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+N+ + IS L ++G +I D G + LT L L
Sbjct: 275 TELNIDYNLISAEGLSSISG-----------NEIGDEGAEIIGDLTNLKEL 314
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 135/282 (47%), Gaps = 13/282 (4%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K L L NL L I+ +++ D+G + G+++LT L++ +T +S L L
Sbjct: 48 IKYLGNLMNLSELYINSNEIGDNGAEDISGMKQLTKLDVSSNDITTKGAKHISKLNKLVS 107
Query: 233 LNLNRCQLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L + + G + + ++ L L++G N++ + L+ L SL++++ + +E
Sbjct: 108 LKMEENMIDAQGIKYITDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNNLLNE 167
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G ++ L NL + ++ I + + L L +L + + D G ++ L LT
Sbjct: 168 GAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISELNNLT 227
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
LD+ +TD G + K L++LEI ++D G++ I L+ LT LN+ N
Sbjct: 228 VLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYN----- 282
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
LIS GL S +S + I G + L NL+ LT++
Sbjct: 283 ----LISA-EGLSS--ISGNEIGDEGAEIIGDLTNLKELTVD 317
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 137/288 (47%), Gaps = 13/288 (4%)
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
++G+K L+NL +L + G ++ G+ +L L++ N IT K +S L
Sbjct: 45 SKGIKYLGNLMNLSELYINSNEIGDNGAEDISGMKQLTKLDVS-SNDITTKGAKHISKLN 103
Query: 181 NLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L SL++ + + GI Y+ L +LT L++ + ++S L L L++
Sbjct: 104 KLVSLKMEENMIDAQGIKYITDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNN 163
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
L ++G S++ +L L + N+I E + L L +L + + DEG ++ L
Sbjct: 164 LLNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISEL 223
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
NL +++S ++D + ++ L LK+L +D QI+D G+ ++ L LT L++
Sbjct: 224 NNLTVLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYNL 283
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
I+ G + I G + D G + I DL++L L + QN
Sbjct: 284 ISAEGLS-----------SISGNEIGDEGAEIIGDLTNLKELTVDQNS 320
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 114/248 (45%), Gaps = 15/248 (6%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNN 117
L +D+S +D+T G H+ + L SL + I G++++ L+ LT L N+
Sbjct: 81 LTKLDVSSNDITTKGAKHISKLNKLVSLKMEENM-IDAQGIKYITDQLNQLTELDIGSND 139
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ G KA + L L L +E ++ G + L+ L L I N I K +
Sbjct: 140 -LGVLGAKAVSELSQLTSLSIENNNLLNEGAAYISRLLNLTDLCIN-SNQIDSEGAKDII 197
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L L +L IS + + D G + L LT+L++ +T ++ +S L L L ++
Sbjct: 198 KLKQLTTLFISGNSLLDEGAKLISELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDE 257
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
Q+SD+G E + L LN+ +N I+ E L + G IGDEG +
Sbjct: 258 NQISDEGIESICGLNQLTELNIDYNLISAEGLSSISG-----------NEIGDEGAEIIG 306
Query: 298 GLTNLESI 305
LTNL+ +
Sbjct: 307 DLTNLKEL 314
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 34/194 (17%)
Query: 307 LSFTGIS---DGSLRKLAGLSSLKSLNL----DARQITDTGLAALTSLTGLTHLDLFGAR 359
L G+S D L+K+ LS LK+L++ R G+ L +L L+ L +
Sbjct: 7 LDMKGVSIFKDSFLKKIGELSQLKTLDIANAAGDRSRFSKGIKYLGNLMNLSELYINSNE 66
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-------NLTDK 412
I D+GA + K L L++ +T G KHI L+ L L + +N +TD+
Sbjct: 67 IGDNGAEDISGMKQLTKLDVSSNDITTKGAKHISKLNKLVSLKMEENMIDAQGIKYITDQ 126
Query: 413 TLEL-----------------ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+L +S L+ L SL++ N+ + + G ++ L NL L + S
Sbjct: 127 LNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNNLLNEGAAYISRLLNLTDLCINSN 186
Query: 456 KVT---ANDIKRLQ 466
++ A DI +L+
Sbjct: 187 QIDSEGAKDIIKLK 200
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L +D+S +++TD G+ + L++L+ + QISD G+E + GL+ LT L+
Sbjct: 221 SELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDEN-QISDEGIESICGLNQLTELNI 279
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
N I+A+G+ + +G N + + I G L NLK L
Sbjct: 280 DY-NLISAEGLSSISG--NEIG---DEGAEIIGDLTNLKEL 314
>gi|297808737|ref|XP_002872252.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
gi|297318089|gb|EFH48511.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
Length = 642
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 228/441 (51%), Gaps = 43/441 (9%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHL----RGLSNLTSLSFRRNNAITAQG 123
++D GL + CSNL + +C++ISD G++ L +GL +L +S+ + IT
Sbjct: 159 LSDVGLARIVVGCSNLNKISLKWCMEISDLGIDLLCKMCKGLKSL-DVSYLK---ITNDS 214
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPL-SGLT 180
+++ A L+ L LD+ C I GL L+ G L+ +++ C ++ S + + G
Sbjct: 215 IRSIALLLKLEVLDMVSCPLIDDAGLQFLENGSPSLQEVDVTRCERVSLSGLISIVRGHP 274
Query: 181 NLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
+++ L+ S S+V+ S + Y+K L+ L + ++G V+ + L +L S+ SL + L+R
Sbjct: 275 DIQLLKASHCVSEVSGSFLQYIKALKHLKTIWIDGAHVSDSSLVTLSSSCRSLVEIGLSR 334
Query: 238 C-QLSDDGCEKFSK-IGSLKVLNL---GFNEITDECLVHL-KGLTNLESLNLDSCG-IGD 290
C ++D G F++ +LK LNL GF +TD + + + NLE+L L+SC I +
Sbjct: 335 CVDVTDIGMMGFARNCLNLKTLNLACCGF--VTDVAISAVAQSCRNLETLKLESCHLITE 392
Query: 291 EGLVNLTGLTN-LESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS- 346
+GL +L + L+ ++L+ G++D L ++ S+L+ L L I+D G+ + S
Sbjct: 393 KGLQSLGCYSKLLQELDLTDCYGVNDRGLEYISKCSNLQRLKLGLCTNISDKGIFHIGSK 452
Query: 347 LTGLTHLDLFG-ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLN 402
+ L LDL+ A D G A L R K+L L C LTD GV+ I+ L L+ L
Sbjct: 453 CSKLLELDLYRCAGFGDDGLAALSRGCKSLNRLILSYC-CELTDTGVEQIRQLELLSHLE 511
Query: 403 LSQNCNLTDKTLELIS-GLTGLVSLNVS-NSRITSAGLRHLKPL-KNLRSLTLESCKVT- 458
L N+T L I+ G L L++ I +G L KNLR + L +C V+
Sbjct: 512 LRGLKNITGVGLAAIACGCKKLGYLDLKLCENIDDSGFWALAYFSKNLRQINLCNCSVSD 571
Query: 459 ------ANDIKRLQSRDLPNL 473
+++ R+Q DL +L
Sbjct: 572 TALCMLMSNLSRVQDVDLVHL 592
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 110/391 (28%), Positives = 178/391 (45%), Gaps = 46/391 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
++D +D++ L S+D+S +T+ + + L+ LD C I D GL+ L
Sbjct: 185 ISDLGIDLLCKMCKGLKSLDVSYLKITNDSIRSIALLLKLEVLDMVSCPLIDDAGLQFLE 244
Query: 104 -GLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERC-TRIHGGLVN-LKGLMKLES 159
G +L + R ++ G+ + G ++ L C + + G + +K L L++
Sbjct: 245 NGSPSLQEVDVTRCERVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLQYIKALKHLKT 304
Query: 160 LNIKWCNCITDSDMKPLS---------GLT------------------NLKSLQISCSK- 191
+ I + ++DS + LS GL+ NLK+L ++C
Sbjct: 305 IWIDGAH-VSDSSLVTLSSSCRSLVEIGLSRCVDVTDIGMMGFARNCLNLKTLNLACCGF 363
Query: 192 VTDSGI-AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY-LNLNRCQ-LSDDGCEK 247
VTD I A + + L L LE C +T L SL L L+L C ++D G E
Sbjct: 364 VTDVAISAVAQSCRNLETLKLESCHLITEKGLQSLGCYSKLLQELDLTDCYGVNDRGLEY 423
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLE 303
SK +L+ L LG I+D+ + H+ + L L+L C G GD+GL L+ G +L
Sbjct: 424 ISKCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSRGCKSLN 483
Query: 304 SINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDL-FGAR 359
+ LS+ ++D + ++ L L L L + IT GLAA+ L +LDL
Sbjct: 484 RLILSYCCELTDTGVEQIRQLELLSHLELRGLKNITGVGLAAIACGCKKLGYLDLKLCEN 543
Query: 360 ITDSGAAYLRNF-KNLRSLEICGGGLTDAGV 389
I DSG L F KNLR + +C ++D +
Sbjct: 544 IDDSGFWALAYFSKNLRQINLCNCSVSDTAL 574
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 112/461 (24%), Positives = 201/461 (43%), Gaps = 96/461 (20%)
Query: 82 NLQSLDFNFCIQISDG-----GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVK 135
NL SLD + C ++ D L+ + SL+ R+ A+ A+G++ A + + L +
Sbjct: 66 NLSSLDLSVCPKLDDDVVLRLALDGTVSTLGIKSLNLSRSTAVRARGLETLARMCHALER 125
Query: 136 LDLERCT----RIHGGLVNLKGLMKLE-----------------------SLNIKWCNCI 168
+D+ C R L + GL +L+ +++KWC I
Sbjct: 126 VDVSHCWGFGDREAAALSSAVGLRELKMDKCLSLSDVGLARIVVGCSNLNKISLKWCMEI 185
Query: 169 TDSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLS- 225
+D + L + LKSL +S K+T+ I + L KL +L++ CP + A L L
Sbjct: 186 SDLGIDLLCKMCKGLKSLDVSYLKITNDSIRSIALLLKLEVLDMVSCPLIDDAGLQFLEN 245
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL-----------NLGFNEITDECLVHLKG 274
SL +++ R CE+ S G + ++ + +E++ L ++K
Sbjct: 246 GSPSLQEVDVTR-------CERVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLQYIKA 298
Query: 275 LTNLESLNLDSCGIGDEGLVNLT---------GLT------------------NLESINL 307
L +L+++ +D + D LV L+ GL+ NL+++NL
Sbjct: 299 LKHLKTIWIDGAHVSDSSLVTLSSSCRSLVEIGLSRCVDVTDIGMMGFARNCLNLKTLNL 358
Query: 308 SFTG-ISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTGLTH----LDLFGARI 360
+ G ++D ++ +A +L++L L++ IT+ GL +L + L D +G +
Sbjct: 359 ACCGFVTDVAISAVAQSCRNLETLKLESCHLITEKGLQSLGCYSKLLQELDLTDCYG--V 416
Query: 361 TDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELI 417
D G Y+ NL+ L+ +C ++D G+ HI S L L+L + D L +
Sbjct: 417 NDRGLEYISKCSNLQRLKLGLC-TNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAAL 475
Query: 418 S-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
S G L L +S +T G+ ++ L+ L L L K
Sbjct: 476 SRGCKSLNRLILSYCCELTDTGVEQIRQLELLSHLELRGLK 516
>gi|320167107|gb|EFW44006.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 624
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 118/263 (44%), Gaps = 13/263 (4%)
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N+IT+ AF GL L L L+ + T I G GL L +L + N IT
Sbjct: 68 NSITSISANAFTGLTALTYLSLQYNQITGIPAG--TFTGLTALTALFFAY-NQITSIPAD 124
Query: 175 PLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+GLT+L L + ++VT SG A+ GL LT L+L +T+ D+ + L +L L
Sbjct: 125 TFTGLTSLTYLSLQNNQVTSISGTAF-TGLTALTSLSLGPNQITSIPADTFTGLTALTTL 183
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL---DSCGIGD 290
+L Q++ F+ + +L L G N+IT G+T+L L+L I
Sbjct: 184 SLQNNQITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISA 243
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
LT LT L N T I G+ L GL+ L LD QIT ++ T+LT L
Sbjct: 244 NAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLY---LDGNQITSIPSSSFTNLTAL 300
Query: 351 THLDLFGARITDSGAAYLRNFKN 373
T L L IT + N
Sbjct: 301 TALALQNNPITTLPPGLFKGLPN 323
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 116/268 (43%), Gaps = 1/268 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT +GLT L L + +++T GL LT L +T+ D+ +
Sbjct: 68 NSITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIPADTFT 127
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L SL YL+L Q++ F+ + +L L+LG N+IT GLT L +L+L +
Sbjct: 128 GLTSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTTLSLQN 187
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
I TGLT L + I+ G++SL L+L +IT A
Sbjct: 188 NQITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISANAFA 247
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
LT LT+L LF +IT L L + G +T +L++LT L L Q
Sbjct: 248 GLTALTYLSLFNNKITSIPVGAFTGLTGLTDLYLDGNQITSIPSSSFTNLTALTALAL-Q 306
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRI 433
N +T L GL ++L+ N +
Sbjct: 307 NNPITTLPPGLFKGLPNGLALSNPNPYL 334
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 116/260 (44%), Gaps = 9/260 (3%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T+ ++ + L +L YL+L Q++ F+ + +L L +N+IT GL
Sbjct: 70 ITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIPADTFTGL 129
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
T+L L+L + + TGLT L S++L I+ GL++L +L+L Q
Sbjct: 130 TSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTTLSLQNNQ 189
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
IT A T LT LT L +IT A +L L + +T L
Sbjct: 190 ITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISANAFAGL 249
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
++LT L+L N +T + +GLTGL L + ++ITS L L +L L++
Sbjct: 250 TALTYLSLFNN-KITSIPVGAFTGLTGLTDLYLDGNQITSIPSSSFTNLTALTALALQN- 307
Query: 456 KVTANDIKRLQS---RDLPN 472
N I L + LPN
Sbjct: 308 ----NPITTLPPGLFKGLPN 323
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L LD IT A T LT LT+L L +IT A L +L +T
Sbjct: 63 LTLDLNSITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIP 122
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
L+SLT L+L QN +T + +GLT L SL++ ++ITS L L
Sbjct: 123 ADTFTGLTSLTYLSL-QNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALT 181
Query: 449 SLTLESCKVTA 459
+L+L++ ++T+
Sbjct: 182 TLSLQNNQITS 192
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ + GL+ LT+LS + NN IT+ AF GL L L + T I G
Sbjct: 165 QITSIPADTFTGLTALTTLSLQ-NNQITSISGTAFTGLTALTCLYFGSNQITSIPAGA-- 221
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
G+ L L++ + N IT +GLT L L + +K+T + GL LT L
Sbjct: 222 FTGMTSLTYLSL-YLNKITSISANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLY 280
Query: 211 LEGCPVTAACLDSLSALGSLFYLNL 235
L+G +T+ S + L +L L L
Sbjct: 281 LDGNQITSIPSSSFTNLTALTALAL 305
>gi|428304289|ref|YP_007141114.1| hypothetical protein Cri9333_0667 [Crinalium epipsammum PCC 9333]
gi|428245824|gb|AFZ11604.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
9333]
Length = 382
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 133/260 (51%), Gaps = 27/260 (10%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
LE ++ L NLT L F N + GL NL L L R + ++K L+ L
Sbjct: 126 LEGIQALRNLTELRFGENKI---SDLAPLRGLTNLTTLHLYR-----NQISDVKPLLSLR 177
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+L + SD+KPL+GLT L +L + +K+TD + L GL LT L L G ++
Sbjct: 178 NLTSLELSSNPISDLKPLAGLTKLTTLGLGGNKITD--LKPLAGLANLTTLELSGNKISD 235
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L L+ L +L L L+ ++SD + + + L L L N+I+D + L GL NL
Sbjct: 236 --LKPLAGLANLTKLYLSGNKISD--LKPVAGLTKLTKLWLDNNQISD--VQPLAGLINL 289
Query: 279 ESLNLDSCGIGD-EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L+LD+ I D + L NLT L L LS ISD + L GL+ L L+L+ +I+
Sbjct: 290 TFLSLDNNKINDVQPLANLTSLMGL---GLSLNKISD--VTPLRGLTKLNWLDLNLNKIS 344
Query: 338 DTGLAALTSLTGLTHLDLFG 357
D +T L GLT+L++ G
Sbjct: 345 D-----VTPLAGLTNLNVNG 359
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 13/146 (8%)
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L L +K LNL ++IT L + +L LT L +I+D A LR NL +L +
Sbjct: 107 LNALQRVKHLNLINKEITS--LEGIQALRNLTELRFGENKISD--LAPLRGLTNLTTLHL 162
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
++D VK + L +LT L LS N ++D L+ ++GLT L +L + ++IT L+
Sbjct: 163 YRNQISD--VKPLLSLRNLTSLELSSNP-ISD--LKPLAGLTKLTTLGLGGNKITD--LK 215
Query: 440 HLKPLKNLRSLTLESCKVTANDIKRL 465
L L NL +L L K++ D+K L
Sbjct: 216 PLAGLANLTTLELSGNKIS--DLKPL 239
>gi|325108218|ref|YP_004269286.1| hypothetical protein Plabr_1653 [Planctomyces brasiliensis DSM
5305]
gi|324968486|gb|ADY59264.1| hypothetical protein Plabr_1653 [Planctomyces brasiliensis DSM
5305]
Length = 1046
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 124/289 (42%), Gaps = 49/289 (16%)
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
++ W NC D D+ LS +L+ + I+ +TD L Q+L + L G +T A
Sbjct: 312 DLDWMNC-NDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLRHIRLTGNQLTEAS 370
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L LS RCQ E+T L H
Sbjct: 371 LRHLS-----------RCQAE-------------------IIELTGRGLKH--------- 391
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
I +E L L + L T ++D +L+ L+ L+SL+ L D Q+T G
Sbjct: 392 -------IPNEIFSQLAKSETLRDLRLWDTALTDDNLQALSSLTSLRVLCADGHQLTPAG 444
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
L L S+ L + L GA TD A L+ K+LR +++ +T+AG+ + +++SL
Sbjct: 445 LKQLASMPFLQEIRLPGANWTDETIALLQPLKSLRRIDLADSAITNAGLAELANITSLEW 504
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLR 448
++L Q ++T++ + ++ L L L + +R L KP ++R
Sbjct: 505 IDL-QGTDITNQGVAALAALNDLQRLELRGTRCNRGSWNTLSKPFPDIR 552
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 36/227 (15%)
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
N +LD D+ + L+ +L + ++ I+D + LA L+ + L Q+
Sbjct: 307 NTNPADLDWMNCNDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLRHIRLTGNQL 366
Query: 337 TDTGL-------AALTSLTG-------------------LTHLDLFGARITDSGAAYLRN 370
T+ L A + LTG L L L+ +TD L +
Sbjct: 367 TEASLRHLSRCQAEIIELTGRGLKHIPNEIFSQLAKSETLRDLRLWDTALTDDNLQALSS 426
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
+LR L G LT AG+K + + L + L N TD+T+ L+ L L +++++
Sbjct: 427 LTSLRVLCADGHQLTPAGLKQLASMPFLQEIRLP-GANWTDETIALLQPLKSLRRIDLAD 485
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTA---------NDIKRLQSR 468
S IT+AGL L + +L + L+ +T ND++RL+ R
Sbjct: 486 SAITNAGLAELANITSLEWIDLQGTDITNQGVAALAALNDLQRLELR 532
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 103/229 (44%), Gaps = 31/229 (13%)
Query: 50 DVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
D I + + LL+ + L+G+ +T++ L HL C I+++ GL+H+
Sbjct: 340 DAITDRAAELLADTQQLRHIRLTGNQLTEASLRHLSRCQAE-------IIELTGRGLKHI 392
Query: 103 RG--LSNLTSLSFRRN-----NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
S L R+ A+T ++A + L +L L + GL L +
Sbjct: 393 PNEIFSQLAKSETLRDLRLWDTALTDDNLQALSSLTSLRVLCADGHQLTPAGLKQLASMP 452
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L+ + + N TD + L L +L+ + ++ S +T++G+A L + L ++L+G
Sbjct: 453 FLQEIRLPGANW-TDETIALLQPLKSLRRIDLADSAITNAGLAELANITSLEWIDLQGTD 511
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
+T + +L+AL +L R +L C + GS L+ F +I
Sbjct: 512 ITNQGVAALAALN-----DLQRLELRGTRCNR----GSWNTLSKPFPDI 551
>gi|56797879|emb|CAH04901.1| internalin A [Listeria monocytogenes]
Length = 483
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 90 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 143
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 195
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 196 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 248
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 249 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 304
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 305 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 354
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 355 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 393
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 46 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 90
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 91 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 120
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 121 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 174
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 175 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 229
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 230 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 282
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 283 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 312
>gi|28555894|emb|CAD45029.1| NBS-LRR disease resistance protein homologue [Hordeum vulgare]
Length = 1262
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/423 (27%), Positives = 192/423 (45%), Gaps = 30/423 (7%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++DLSG ++ NLQ L+ + C ++ + E L NL +L+
Sbjct: 756 LRTIDLSGCKKLETFPESFGSLENLQILNLSNCFEL-ESLPESFGSLKNLQTLNLVECKK 814
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ + ++ GL NL LD C ++ +L GL L++L + C+ + S +K L
Sbjct: 815 LESLP-ESLGGLKNLQTLDFSVCHKLESVPESLGGLNNLQTLKLSVCDNLV-SLLKSLGS 872
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL++L +S K +S L L+ L +LNL C + +SL L +L LN++ C
Sbjct: 873 LKNLQTLDLSGCKKLESLPESLGSLENLQILNLSNCFKLESLPESLGRLKNLQTLNISWC 932
Query: 239 -----------------QLSDDGCEKFSKIG-------SLKVLNLGFNEITDECLVHLKG 274
+L GC K + +L+ LNL + L G
Sbjct: 933 TELVFLPKNLGNLKNLPRLDLSGCMKLESLPDSLGSLENLETLNLSKCFKLESLPESLGG 992
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L NL++L+L C + +L GL NL+++ LSF + L GL +L++L L
Sbjct: 993 LQNLQTLDLLVCHKLESLPESLGGLKNLQTLQLSFCHKLESLPESLGGLKNLQTLTLSVC 1052
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
++ +L SL L L L S L + KNL +L + ++ + +
Sbjct: 1053 DKLESLPESLGSLKNLHTLKLQVCYKLKSLPESLGSIKNLHTLNLSVCHNLESIPESVGS 1112
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 453
L +L +LNLS NC + + + L L +L +S +R+ S ++L LKNL++L L
Sbjct: 1113 LENLQILNLS-NCFKLESIPKSLGSLKNLQTLILSWCTRLVSLP-KNLGNLKNLQTLDLS 1170
Query: 454 SCK 456
CK
Sbjct: 1171 GCK 1173
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 181/398 (45%), Gaps = 14/398 (3%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL-EHLRGLSNLTSLSFRRNNAIT 120
+DLSG + D L+ L+ ++ D E + LS L L+ + I+
Sbjct: 569 LDLSGCSIKDFA----SALGQLKQLEVLIAQKLQDRQFPESITRLSKLHYLNLSGSRGIS 624
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+ + L++LV LDL CT + L L L++L++ WC + +S + L +
Sbjct: 625 -EIPSSVGKLVSLVHLDLSYCTNVKVIPKALGILRNLQTLDLSWCEKL-ESLPESLGSVQ 682
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ L +S ++ L L+ + L+L C + +SL +L ++ L+L+RC
Sbjct: 683 NLQRLNLSNCFELEALPESLGSLKDVQTLDLSSCYKLESLPESLGSLKNVQTLDLSRCYK 742
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
+ ++ +L+ ++L + + L NL+ LNL +C + + L
Sbjct: 743 LVSLPKNLGRLKNLRTIDLSGCKKLETFPESFGSLENLQILNLSNCFELESLPESFGSLK 802
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
NL+++NL + L GL +L++L+ + + SL GL +L +
Sbjct: 803 NLQTLNLVECKKLESLPESLGGLKNLQTLDFSVCHKLE---SVPESLGGLNNLQTLKLSV 859
Query: 361 TDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
D+ + L+ + KNL++L++ G ++ + + L +L +LNLS NC + E +
Sbjct: 860 CDNLVSLLKSLGSLKNLQTLDLSGCKKLESLPESLGSLENLQILNLS-NCFKLESLPESL 918
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L L +LN+S ++L LKNL L L C
Sbjct: 919 GRLKNLQTLNISWCTELVFLPKNLGNLKNLPRLDLSGC 956
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 170/375 (45%), Gaps = 6/375 (1%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLER 140
NLQ+LD ++C ++ + E L + NL L+ +N + + ++ L ++ LDL
Sbjct: 659 NLQTLDLSWCEKL-ESLPESLGSVQNLQRLNL--SNCFELEALPESLGSLKDVQTLDLSS 715
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
C ++ +L L +++L++ C + S K L L NL+++ +S K ++
Sbjct: 716 CYKLESLPESLGSLKNVQTLDLSRCYKLV-SLPKNLGRLKNLRTIDLSGCKKLETFPESF 774
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
L+ L +LNL C + +S +L +L LNL C+ + E + +L+ L+
Sbjct: 775 GSLENLQILNLSNCFELESLPESFGSLKNLQTLNLVECKKLESLPESLGGLKNLQTLDFS 834
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
+ L GL NL++L L C L +L L NL++++LS + L
Sbjct: 835 VCHKLESVPESLGGLNNLQTLKLSVCDNLVSLLKSLGSLKNLQTLDLSGCKKLESLPESL 894
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
L +L+ LNL ++ +L L L L++ L N KNL L++
Sbjct: 895 GSLENLQILNLSNCFKLESLPESLGRLKNLQTLNISWCTELVFLPKNLGNLKNLPRLDLS 954
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
G ++ + L +L LNLS+ C + E + GL L +L++ +
Sbjct: 955 GCMKLESLPDSLGSLENLETLNLSK-CFKLESLPESLGGLQNLQTLDLLVCHKLESLPES 1013
Query: 441 LKPLKNLRSLTLESC 455
L LKNL++L L C
Sbjct: 1014 LGGLKNLQTLQLSFC 1028
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 107/403 (26%), Positives = 182/403 (45%), Gaps = 29/403 (7%)
Query: 44 VNDKWMDVIASQGS--SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD----- 96
V D + ++ S GS +L ++DLSG +S L NLQ L+ + C ++
Sbjct: 859 VCDNLVSLLKSLGSLKNLQTLDLSGCKKLESLPESLGSLENLQILNLSNCFKLESLPESL 918
Query: 97 GGLEHLRGL--SNLTSLSFRRNNAITAQGMK---------------AFAGLINLVKLDLE 139
G L++L+ L S T L F N + + + L NL L+L
Sbjct: 919 GRLKNLQTLNISWCTELVFLPKNLGNLKNLPRLDLSGCMKLESLPDSLGSLENLETLNLS 978
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+C ++ +L GL L++L++ C+ + +S + L GL NL++LQ+S +S
Sbjct: 979 KCFKLESLPESLGGLQNLQTLDLLVCHKL-ESLPESLGGLKNLQTLQLSFCHKLESLPES 1037
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L GL+ L L L C + +SL +L +L L L C E I +L LNL
Sbjct: 1038 LGGLKNLQTLTLSVCDKLESLPESLGSLKNLHTLKLQVCYKLKSLPESLGSIKNLHTLNL 1097
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
+ + L NL+ LNL +C + +L L NL+++ LS+ +
Sbjct: 1098 SVCHNLESIPESVGSLENLQILNLSNCFKLESIPKSLGSLKNLQTLILSWCTRLVSLPKN 1157
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L L +L++L+L + ++ +L SL L L+L +S L + K L++L +
Sbjct: 1158 LGNLKNLQTLDLSGCKKLESLPDSLGSLENLQTLNLSNCFKLESLPEILGSLKKLQTLNL 1217
Query: 380 CGGGLTDA---GVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
G ++ + +K L +L L++ + K+LE +SG
Sbjct: 1218 FRCGKLESLPESLGSLKHLQTLVLIDCPK-LEYLPKSLENLSG 1259
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 174/398 (43%), Gaps = 6/398 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ LS D S L L NLQ+LD + C ++ + E L L NL L+ +N
Sbjct: 852 LQTLKLSVCDNLVSLLKSLGSLKNLQTLDLSGCKKL-ESLPESLGSLENLQILNL--SNC 908
Query: 119 ITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ + G L NL L++ CT + NL L L L++ C + +S L
Sbjct: 909 FKLESLPESLGRLKNLQTLNISWCTELVFLPKNLGNLKNLPRLDLSGCMKL-ESLPDSLG 967
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L NL++L +S +S L GLQ L L+L C + +SL L +L L L+
Sbjct: 968 SLENLETLNLSKCFKLESLPESLGGLQNLQTLDLLVCHKLESLPESLGGLKNLQTLQLSF 1027
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
C + E + +L+ L L + + L L NL +L L C +L
Sbjct: 1028 CHKLESLPESLGGLKNLQTLTLSVCDKLESLPESLGSLKNLHTLKLQVCYKLKSLPESLG 1087
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
+ NL ++NLS + + L +L+ LNL ++ +L SL L L L
Sbjct: 1088 SIKNLHTLNLSVCHNLESIPESVGSLENLQILNLSNCFKLESIPKSLGSLKNLQTLILSW 1147
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
S L N KNL++L++ G ++ + L +L LNLS NC + E++
Sbjct: 1148 CTRLVSLPKNLGNLKNLQTLDLSGCKKLESLPDSLGSLENLQTLNLS-NCFKLESLPEIL 1206
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L L +LN+ + L LK+L++L L C
Sbjct: 1207 GSLKKLQTLNLFRCGKLESLPESLGSLKHLQTLVLIDC 1244
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 130/282 (46%), Gaps = 3/282 (1%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
++ L+ L L +S S+ + + L L L+L C +L L +L L+L
Sbjct: 606 ITRLSKLHYLNLSGSRGISEIPSSVGKLVSLVHLDLSYCTNVKVIPKALGILRNLQTLDL 665
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSCGIGDEGLV 294
+ C+ + E + +L+ LNL N E L L L ++++L+L SC +
Sbjct: 666 SWCEKLESLPESLGSVQNLQRLNLS-NCFELEALPESLGSLKDVQTLDLSSCYKLESLPE 724
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
+L L N+++++LS + L L +L++++L + +T + SL L L+
Sbjct: 725 SLGSLKNVQTLDLSRCYKLVSLPKNLGRLKNLRTIDLSGCKKLETFPESFGSLENLQILN 784
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L +S + KNL++L + ++ + + L +L L+ S C+ +
Sbjct: 785 LSNCFELESLPESFGSLKNLQTLNLVECKKLESLPESLGGLKNLQTLDFSV-CHKLESVP 843
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
E + GL L +L +S + L+ L LKNL++L L CK
Sbjct: 844 ESLGGLNNLQTLKLSVCDNLVSLLKSLGSLKNLQTLDLSGCK 885
>gi|290976253|ref|XP_002670855.1| predicted protein [Naegleria gruberi]
gi|284084418|gb|EFC38111.1| predicted protein [Naegleria gruberi]
Length = 286
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 123/273 (45%), Gaps = 27/273 (9%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
CN + D +S L SL + +++ +G + +++LT LN++ V S+
Sbjct: 11 CNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNNSVGVEGAHSI 70
Query: 225 SALGSLFYL------------------------NLNRCQLSDDGCEKFSKIGSLKVLNLG 260
S + L +L N++ Q++ +G F ++ L +LN+G
Sbjct: 71 SNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFKEMKQLIILNVG 130
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
N I +E + ++ GL+ L L++ C G+EG +++ LTNL + I + + +
Sbjct: 131 SNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCCSNNIREEGAKSI 190
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
+ L + LNL + G ++ + LTHL + I D GA L +NL+ L I
Sbjct: 191 SQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSNEIGDDGAEDLCGLENLKVLSIR 250
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
G ++ V+ I +L T + NL D+T
Sbjct: 251 GNNISYDMVQAIHELGKFT---VESEGNLFDET 280
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 1/231 (0%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+ L L+L QL D+ K S+ L L + NEI + + L SLN+ +
Sbjct: 1 MSQLTELSLECNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNN 60
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
+G EG +++ +T L +++S I D + + L L +LN+ QIT G+
Sbjct: 61 SVGVEGAHSISNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFKE 120
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ L L++ RI + G + L L+I G + G K I L++LT L N
Sbjct: 121 MKQLIILNVGSNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCCSN 180
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
N+ ++ + IS L + LN+ + + + G +H+ +K L L ++S ++
Sbjct: 181 -NIREEGAKSISQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSNEI 230
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+S L L+L+ Q+ D ++ LT L + I +GA + K L SL I
Sbjct: 1 MSQLTELSLECNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNN 60
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ G I +++ LT L++S N N+ D+ ++I L L +LN+S ++ITS G+ K
Sbjct: 61 SVGVEGAHSISNMTRLTHLDISLN-NIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFK 119
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
+K L L + S ++ I+ +
Sbjct: 120 EMKQLIILNVGSNRIGNEGIENI 142
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 35/227 (15%)
Query: 59 LLSVDLSGSDVTDSG---LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
L +D+S +++ D G + LK +NL ++ +N QI+ G+ + + L L+
Sbjct: 76 LTHLDISLNNIGDEGAKIICQLKQLTNL-NISYN---QITSNGMIPFKEMKQLIILNVG- 130
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+N I +G++ +GL L +LD+ C + K
Sbjct: 131 SNRIGNEGIENISGLSQLTELDIGGCD-------------------------FGNEGAKS 165
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+S LTNL L + + + G + L+K+T LNL + A +S + L +L +
Sbjct: 166 ISQLTNLTCLYCCSNNIREEGAKSISQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYM 225
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL--VHLKGLTNLES 280
+ ++ DDG E + +LKVL++ N I+ + + +H G +ES
Sbjct: 226 DSNEIGDDGAEDLCGLENLKVLSIRGNNISYDMVQAIHELGKFTVES 272
>gi|168703296|ref|ZP_02735573.1| hypothetical protein GobsU_27441 [Gemmata obscuriglobus UQM 2246]
Length = 635
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
TD +++ + + ++ ++I+ VT +G+ +L L KL L ++ CPV + + L+A
Sbjct: 228 TDDELRVFTSIREVEHVRIANGDVTTAGLYHLPRLSKLKTLEIDSCPVDS--IAPLTACP 285
Query: 229 SLFYLNL-------NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+L L + R ++D G K+ +L+ L L + EI + L L L L SL
Sbjct: 286 NLTELVITAEAGTERRAVVNDTGTAGLEKLTNLRRLKLDWCEIGGQTLRRLAALHRLRSL 345
Query: 282 NL---DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L I L LTGL LE + L I +L + L +L++L L D
Sbjct: 346 ELMLFWGQHISGTDLAELTGLLELEKLTLH--PIPPWALEYIGPLRTLRTLTLSLFGEGD 403
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+ L LT L L L G +TD +LR ++LR+L I +T G
Sbjct: 404 SEFRHLAQLTNLCWLKLTGPAVTDCALGHLRTLRSLRTLHISESAVTATGA 454
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 101/252 (40%), Gaps = 59/252 (23%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI------------ 288
+DD F+ I ++ + + ++T L HL L+ L++L +DSC +
Sbjct: 228 TDDELRVFTSIREVEHVRIANGDVTTAGLYHLPRLSKLKTLEIDSCPVDSIAPLTACPNL 287
Query: 289 -----------------GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
D G L LTNL + L + I +LR+LA L L+SL L
Sbjct: 288 TELVITAEAGTERRAVVNDTGTAGLEKLTNLRRLKLDWCEIGGQTLRRLAALHRLRSLEL 347
Query: 332 ---DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
+ I+ T LA LT L L L L I Y+ + LR+L + G D+
Sbjct: 348 MLFWGQHISGTDLAELTGLLELEKLTLHP--IPPWALEYIGPLRTLRTLTLSLFGEGDSE 405
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
+H+ L++L L L+ +T L HL+ L++LR
Sbjct: 406 FRHLAQLTNLCWLKLT-------------------------GPAVTDCALGHLRTLRSLR 440
Query: 449 SLTLESCKVTAN 460
+L + VTA
Sbjct: 441 TLHISESAVTAT 452
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 105/233 (45%), Gaps = 17/233 (7%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-------VTDSGIA 198
GL +L L KL++L I +C DS + PL+ NL L I+ V D+G A
Sbjct: 254 AGLYHLPRLSKLKTLEID--SCPVDS-IAPLTACPNLTELVITAEAGTERRAVVNDTGTA 310
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVL 257
L+ L L L L+ C + L L+AL L L L G + G L++
Sbjct: 311 GLEKLTNLRRLKLDWCEIGGQTLRRLAALHRLRSLELMLFWGQHISGTDLAELTGLLELE 370
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSL 317
L + I L ++ L L +L L G GD +L LTNL + L+ ++D +L
Sbjct: 371 KLTLHPIPPWALEYIGPLRTLRTLTLSLFGEGDSEFRHLAQLTNLCWLKLTGPAVTDCAL 430
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
L L SL++L++ +T TG ALT L H I+D+ A+ N
Sbjct: 431 GHLRTLRSLRTLHISESAVTATG--ALT----LAHQLPAAKIISDTVVAWSPN 477
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 103/238 (43%), Gaps = 27/238 (11%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
V ++ DVT +GL HL S L++L+ + C S + L NLT L ITA
Sbjct: 244 VRIANGDVTTAGLYHLPRLSKLKTLEIDSCPVDS---IAPLTACPNLTEL------VITA 294
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ ++N G L+ L L L + WC I ++ L+ L
Sbjct: 295 EAGTERRAVVN------------DTGTAGLEKLTNLRRLKLDWCE-IGGQTLRRLAALHR 341
Query: 182 LKSLQISC---SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L+SL++ ++ + +A L GL +L L L P+ L+ + L +L L L+
Sbjct: 342 LRSLELMLFWGQHISGTDLAELTGLLELEKLTLH--PIPPWALEYIGPLRTLRTLTLSLF 399
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
D +++ +L L L +TD L HL+ L +L +L++ + G + L
Sbjct: 400 GEGDSEFRHLAQLTNLCWLKLTGPAVTDCALGHLRTLRSLRTLHISESAVTATGALTL 457
>gi|299469989|emb|CBN79166.1| Hypothetical leucine rich repeat protein [Ectocarpus siliculosus]
Length = 894
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 121/253 (47%), Gaps = 6/253 (2%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIA-----YLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
L L NL+ L +S +K++ L L +L L L +T + L AL +L
Sbjct: 65 LGKLGNLQQLHLSSNKLSGRWFQGHIPKELGDLSQLQALELYRNQLTGPIPEELGALSNL 124
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
+L+L QL+ + ++G+L+ LNL +N+++ L +NL L L S + D
Sbjct: 125 LWLSLYSNQLTGEIPATLGQLGNLEELNLSWNKLSGPIPDVLGAHSNLRELLLSSNQLTD 184
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
E L L NL+ ++LS+ +S ++L GLS L++L L Q++ AL +L+ L
Sbjct: 185 EIPATLGQLGNLQQLDLSWNKLSGYIPQELGGLSQLQTLWLYFNQLSGPIPEALGTLSNL 244
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L L+ R+TD A L NL+ L + L+ + + LS L L L N LT
Sbjct: 245 RELSLYSNRLTDEIPATLGQLGNLQQLRLSWNKLSGHIPQELGSLSQLQTLGLHHN-QLT 303
Query: 411 DKTLELISGLTGL 423
E + L+ L
Sbjct: 304 GPIFEALGDLSEL 316
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 110/233 (47%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K L L+ L++L++ +++T L L L L+L +T +L LG+L L
Sbjct: 92 KELGDLSQLQALELYRNQLTGPIPEELGALSNLLWLSLYSNQLTGEIPATLGQLGNLEEL 151
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
NL+ +LS + +L+ L L N++TDE L L NL+ L+L +
Sbjct: 152 NLSWNKLSGPIPDVLGAHSNLRELLLSSNQLTDEIPATLGQLGNLQQLDLSWNKLSGYIP 211
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
L GL+ L+++ L F +S L LS+L+ L+L + ++TD A L L L L
Sbjct: 212 QELGGLSQLQTLWLYFNQLSGPIPEALGTLSNLRELSLYSNRLTDEIPATLGQLGNLQQL 271
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L +++ L + L++L + LT + + DLS L L L+ N
Sbjct: 272 RLSWNKLSGHIPQELGSLSQLQTLGLHHNQLTGPIFEALGDLSELDFLVLNDN 324
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 90/192 (46%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N +T L L NL+ L +S +K++ L L L L +T +
Sbjct: 130 YSNQLTGEIPATLGQLGNLEELNLSWNKLSGPIPDVLGAHSNLRELLLSSNQLTDEIPAT 189
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L LG+L L+L+ +LS ++ + L+ L L FN+++ L L+NL L+L
Sbjct: 190 LGQLGNLQQLDLSWNKLSGYIPQELGGLSQLQTLWLYFNQLSGPIPEALGTLSNLRELSL 249
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
S + DE L L NL+ + LS+ +S ++L LS L++L L Q+T A
Sbjct: 250 YSNRLTDEIPATLGQLGNLQQLRLSWNKLSGHIPQELGSLSQLQTLGLHHNQLTGPIFEA 309
Query: 344 LTSLTGLTHLDL 355
L L+ L L L
Sbjct: 310 LGDLSELDFLVL 321
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 128/308 (41%), Gaps = 51/308 (16%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG-CPVTAACLDSL 224
N TD+D+K G+ ++ K+ D+ NLEG P T L
Sbjct: 26 NWDTDADLKTWHGVDVNDQGRVVKLKLRDN--------------NLEGEIPAT------L 65
Query: 225 SALGSLFYLNLNRCQLSDDGCE-----KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
LG+L L+L+ +LS + + + L+ L L N++T L L+NL
Sbjct: 66 GKLGNLQQLHLSSNKLSGRWFQGHIPKELGDLSQLQALELYRNQLTGPIPEELGALSNLL 125
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L+L S + E L L NLE +NLS+ +S L S+L+ L L + Q+TD
Sbjct: 126 WLSLYSNQLTGEIPATLGQLGNLEELNLSWNKLSGPIPDVLGAHSNLRELLLSSNQLTDE 185
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
A L L L LDL +++ Y+ + + LS L
Sbjct: 186 IPATLGQLGNLQQLDLSWNKLS----GYIP--------------------QELGGLSQLQ 221
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
L L N L+ E + L+ L L++ ++R+T L L NL+ L L K++
Sbjct: 222 TLWLYFN-QLSGPIPEALGTLSNLRELSLYSNRLTDEIPATLGQLGNLQQLRLSWNKLSG 280
Query: 460 NDIKRLQS 467
+ + L S
Sbjct: 281 HIPQELGS 288
>gi|219821273|gb|ACL37760.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDIVMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|302802011|ref|XP_002982761.1| hypothetical protein SELMODRAFT_52320 [Selaginella moellendorffii]
gi|300149351|gb|EFJ16006.1| hypothetical protein SELMODRAFT_52320 [Selaginella moellendorffii]
Length = 516
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 135/498 (27%), Positives = 211/498 (42%), Gaps = 75/498 (15%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS-QGSSL 59
+LP +++ + ++L+ + LE F+ ++++L L V+ +WM I + +
Sbjct: 28 ILPAHLAESLLHQLLVKNLFSPPLLELFQ-LSVEELDLNGELSVDAEWMAYIGGFRHLRV 86
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF-------CIQISDGGLEHLRGLSNLTSLS 112
L V+ S + +S + HL L F+F C +I++ GLEH+ L L L
Sbjct: 87 LKVE-SCKALNNSAIWHLSG-----KLHFSFERKLIDRCSKITNQGLEHILTLGKLKHLG 140
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL------VNLKGLMKLESLNIKWCN 166
I QG+ A L NL LDL GGL V+ +++L W +
Sbjct: 141 LS-ETGIGEQGIGKLAVLRNLSHLDL-------GGLPVTDSHVSSLLVLQLLIDLQLWGS 192
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT--------- 217
IT+ L G L+ L ++ +KV+ + + +++ LNL C V
Sbjct: 193 SITNEGANMLRGFPRLEILNLAWTKVS-----VVPSMPRVSQLNLSHCVVLSVSEEGSAL 247
Query: 218 -------AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK-VLNLGFNEI----T 265
A D L L S L+ +LS + +GSLK V+ L + + +
Sbjct: 248 DQLRLSGATIQDPLRVLHSHSLPELSVLELSATNLAALTFLGSLKRVVKLDLSSMPSVSS 307
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LTNLESINLSFTGISDGSLRKLAGLS 324
D + K NL+ L+L +G EG+ LTG + LE ++L T I+D L +
Sbjct: 308 DTMNLLAKCARNLKHLDLSDTRVGSEGVAVLTGHVPALEHLSLRGTSITDSVFGYLGLMP 367
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT----DSG---AAYLRNFKNLRSL 377
L ++L TSLTG+ + T DS +L+ NLR L
Sbjct: 368 LLIDIDLSN-----------TSLTGMPVFEFTKVYYTCAPVDSSFWSVLHLQQLHNLRRL 416
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
++ +D K + L LT L L LTD +L +S L L SL + +T AG
Sbjct: 417 DLRRTRFSDKSCKRLACLVRLTHLLLCAEF-LTDASLHELSALPNLRSLAFQGTVLTDAG 475
Query: 438 LRHLKPLKNLRSLTLESC 455
LR LKP L L L C
Sbjct: 476 LRSLKPPPPLEELDLTDC 493
>gi|428298451|ref|YP_007136757.1| small GTP-binding protein [Calothrix sp. PCC 6303]
gi|428234995|gb|AFZ00785.1| small GTP-binding protein [Calothrix sp. PCC 6303]
Length = 1408
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 134/281 (47%), Gaps = 23/281 (8%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTR 143
L +N +I + L L+NLT L+ N I KA A L NL +LDL R T
Sbjct: 478 LSYNRITEIPEA----LAKLTNLTQLNLSDNQIIKIP--KALAKLSNLTQLDLNRNKITE 531
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
I L L L +L N N IT+ + L+ LTNL L + + + L
Sbjct: 532 IPEALAKLTNLTQLYLRN----NRITEIP-EALAKLTNLTQLDLGTNYNISEIPEAITKL 586
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
LT LNL +T + ++ L +L LNL Q+++ E +K+ +L L L N+
Sbjct: 587 TNLTQLNLTSSQITEIP-EVIAKLTNLTQLNLTSNQIAE-IPEAIAKLTNLTQLILTSNQ 644
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
IT E + LTNL LNL S I E + LT LT L LS+ I++ +A
Sbjct: 645 IT-EIPEAIAKLTNLTQLNLTSNQITKIPEAIAKLTNLTQL---ILSYNQITEIP-EAIA 699
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
L++L L L + QIT+ A+T LT LT LDL RI++
Sbjct: 700 KLTNLTQLILTSNQITEIP-DAITKLTNLTQLDLSYNRISE 739
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 189/403 (46%), Gaps = 47/403 (11%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-- 139
NL LD ++ QI+ E L L+NLT L +N IT + + A L NL +LDL
Sbjct: 311 NLTQLDLSYN-QITKIP-EALAKLTNLTQLILY-SNQIT-EIPEVIAKLTNLTQLDLSYN 366
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+ T+I L L L +L I + N I++ + L+ L NL + +S +++++ A
Sbjct: 367 QITKIPEALAKLTNLTQL----ILYSNRISEIP-EALAKLINLTQIILSYNRISEIPEA- 420
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L LT L+L +T ++L+ L +L + L+ ++++ E +K+ +L+ L L
Sbjct: 421 LAKLTNLTQLDLSYNQITKIP-EALAKLINLTQIILHSNKITE-IPEALAKLTNLRQLYL 478
Query: 260 GFNEITD--ECLVHLKGLT--------------------NLESLNLDSCGIGD--EGLVN 295
+N IT+ E L L LT NL L+L+ I + E L
Sbjct: 479 SYNRITEIPEALAKLTNLTQLNLSDNQIIKIPKALAKLSNLTQLDLNRNKITEIPEALAK 538
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
LT LT L N T I + LA L++L L+L A+T LT LT L+L
Sbjct: 539 LTNLTQLYLRNNRITEIPEA----LAKLTNLTQLDLGTNYNISEIPEAITKLTNLTQLNL 594
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
++IT+ + NL L + + + + I L++LT L L+ N + E
Sbjct: 595 TSSQITEIPEV-IAKLTNLTQLNLTSNQIAEIP-EAIAKLTNLTQLILT--SNQITEIPE 650
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
I+ LT L LN+++++IT + L NL L L ++T
Sbjct: 651 AIAKLTNLTQLNLTSNQITKIP-EAIAKLTNLTQLILSYNQIT 692
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 187/388 (48%), Gaps = 31/388 (7%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ + SNL L FN IS E + LSNL L +N IT + +A A L NL +L
Sbjct: 122 IANLSNLTQLYFNSN-HISKIP-ELIAKLSNLRELHVS-SNKIT-EIPEAIAKLSNLREL 177
Query: 137 DLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ + T I + NL L +L N IT+ + ++ L NL+ LQ+S +K+T+
Sbjct: 178 HVSSNQITEIPEAIANLSNLRELHV----SSNQITEIP-EAIAKLINLRELQVSSNKITE 232
Query: 195 --SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
IA L L+KL L N + + + ++ L +L L+L+ Q++ E +K+
Sbjct: 233 IPEVIAKLTNLRKLYLRNNQITEIP----EVIAKLTNLTQLDLSYNQIT-KISEALAKLI 287
Query: 253 SLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+L + L N+IT+ + L L LT L+ L+ + E L LT LT L + T
Sbjct: 288 NLTQIILHNNKITEIPDALAKLINLTQLD-LSYNQITKIPEALAKLTNLTQLILYSNQIT 346
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I + +A L++L L+L QIT AL LT LT L L+ RI++ A L
Sbjct: 347 EIPEV----IAKLTNLTQLDLSYNQITKIP-EALAKLTNLTQLILYSNRISEIPEA-LAK 400
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
NL + + +++ + + L++LT L+LS N K E ++ L L + + +
Sbjct: 401 LINLTQIILSYNRISEIP-EALAKLTNLTQLDLS--YNQITKIPEALAKLINLTQIILHS 457
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVT 458
++IT L L NLR L L ++T
Sbjct: 458 NKITEIP-EALAKLTNLRQLYLSYNRIT 484
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 20/281 (7%)
Query: 63 DLSGSDVTDSGLIHLKDC----SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
+L+ +++D+ +I + SNL LD N +I++ E L L+NLT L + RNN
Sbjct: 495 NLTQLNLSDNQIIKIPKALAKLSNLTQLDLNRN-KITEIP-EALAKLTNLTQL-YLRNNR 551
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + +A A L NL +LDL I + L L LN+ ++ ++
Sbjct: 552 IT-EIPEALAKLTNLTQLDLGTNYNISEIPEAITKLTNLTQLNLTSSQITEIPEV--IAK 608
Query: 179 LTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
LTNL L ++ +++ + IA L L +L L + + + A ++ L +L LNL
Sbjct: 609 LTNLTQLNLTSNQIAEIPEAIAKLTNLTQLILTSNQITEIPEA----IAKLTNLTQLNLT 664
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++ E +K+ +L L L +N+IT E + LTNL L L S I E +
Sbjct: 665 SNQITK-IPEAIAKLTNLTQLILSYNQIT-EIPEAIAKLTNLTQLILTSNQIT-EIPDAI 721
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
T LTNL ++LS+ IS+ L L + LN RQI+
Sbjct: 722 TKLTNLTQLDLSYNRISEIPLEILDSKDPKEILNY-LRQIS 761
>gi|421888174|ref|ZP_16319282.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum K60-1]
gi|378966463|emb|CCF96030.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum K60-1]
Length = 468
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 177/403 (43%), Gaps = 20/403 (4%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLD-FNFCIQISDG 97
+ P + + + ++ + + D+ VT+ +GL K N +L+ + +D
Sbjct: 8 RSPPLTVQRLRAVSKSVKAAVEADIRQLVVTNRAGLAGAKRTGNYPALEKLTLAVPFTDA 67
Query: 98 GLEHLRGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
L+ L L L R ITA G+ A + LV+L+L +G + L G +
Sbjct: 68 DLKGL--PPTLKELDLSRCRGGITAAGI-AHLNRLPLVRLNL------NGNRIGLAGAQR 118
Query: 157 LE------SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L +L++ C I + + L+ L +L +S +++ G+ L + LT L+
Sbjct: 119 LANHPTLTALDVGRCR-IGPEEARELAASARLTTLNVSRNRIGGEGVRALADCKTLTSLD 177
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ + A L A L LN+NR ++ G + +L L++G N I DE +
Sbjct: 178 VSENGLGDAEAQRLGASERLTTLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDEGVD 237
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L L +LN++ G+G G+ L L S+ + I D LA SL +L+
Sbjct: 238 ALVANAQLTTLNVERAGVGAHGVQALADCKTLTSLRIDSNNIGDEGANTLAASISLTTLH 297
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ I G AL + T LT L+L + D+GA L L L + GL+DAG
Sbjct: 298 SEGNGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQALFANTTLVWLSVRRNGLSDAGAI 357
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
+ +LT L++ N + D ++ L +LNVS++ I
Sbjct: 358 RLAASRTLTTLDIGDNA-IKDAGARALAANRTLTTLNVSSNEI 399
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 158/349 (45%), Gaps = 3/349 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ ++L+G+ + +G L + L +LD C +I L + LT+L+ RN
Sbjct: 101 LVRLNLNGNRIGLAGAQRLANHPTLTALDVGRC-RIGPEEARELAASARLTTLNVSRNR- 158
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G++A A L LD+ L +L +LN+ N I + L+
Sbjct: 159 IGGEGVRALADCKTLTSLDVSENGLGDAEAQRLGASERLTTLNVNR-NRIDVPGARALAA 217
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L SL I + + D G+ L +LT LN+E V A + +L+ +L L ++
Sbjct: 218 CKTLTSLDIGGNSIGDEGVDALVANAQLTTLNVERAGVGAHGVQALADCKTLTSLRIDSN 277
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D+G + SL L+ N I L T L +LNL +GD G L
Sbjct: 278 NIGDEGANTLAASISLTTLHSEGNGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQALFA 337
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
T L +++ G+SD +LA +L +L++ I D G AL + LT L++
Sbjct: 338 NTTLVWLSVRRNGLSDAGAIRLAASRTLTTLDIGDNAIKDAGARALAANRTLTTLNVSSN 397
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
I ++GA L L+SL++ + + GV+ + +L+ L +S NC
Sbjct: 398 EIGNAGARALAANARLKSLDLRNNRMLEGGVRALLANRTLSSLGVSFNC 446
>gi|290993148|ref|XP_002679195.1| predicted protein [Naegleria gruberi]
gi|284092811|gb|EFC46451.1| predicted protein [Naegleria gruberi]
Length = 311
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 107/197 (54%), Gaps = 4/197 (2%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLE---SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
++N+ FNE+ E ++K ++ ++ SL++ IG+ G +++ + L S+N+ I
Sbjct: 107 IVNVKFNEMLLELRENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRI 166
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
D + ++ + L L++ I D G+ ++ + LT ++ I + GA + +
Sbjct: 167 GDEGAKFISEMQQLTLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQ 226
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
L SL++ + D+GVK I ++ LT LN++ N + D+ +LIS + L SLN+S++
Sbjct: 227 QLTSLDVSDNHIGDSGVKFISEMKQLTSLNIAIN-RVGDEGAKLISEMKQLRSLNISDNE 285
Query: 433 ITSAGLRHLKPLKNLRS 449
+ G++ + +K LRS
Sbjct: 286 LGDEGVKFISEMKQLRS 302
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 89/175 (50%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L L+++ ++ + G + S++ L LN+ N I DE + + L L++
Sbjct: 126 ISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLLDI 185
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
IGD+G+ ++ + L S N+S I + + ++ + L SL++ I D+G+
Sbjct: 186 SDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKF 245
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
++ + LT L++ R+ D GA + K LRSL I L D GVK I ++ L
Sbjct: 246 ISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQL 300
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 1/177 (0%)
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
S++ L L++ NEI + H+ + L SLN+ + IGDEG ++ + L +++S
Sbjct: 127 SEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLLDIS 186
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
I D ++ ++ + L S N+ I + G +++ + LT LD+ I DSG ++
Sbjct: 187 DNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKFI 246
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
K L SL I + D G K I ++ L LN+S N L D+ ++ IS + L S
Sbjct: 247 SEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDN-ELGDEGVKFISEMKQLRS 302
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 1/162 (0%)
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
E + ++ + L S+++S I + + ++ + L SLN+ +I D G ++ + L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T LD+ I D G ++ K L S I + + G K I ++ LT L++S N ++
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDN-HIG 239
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
D ++ IS + L SLN++ +R+ G + + +K LRSL +
Sbjct: 240 DSGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNI 281
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 90/182 (49%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
I ++ +++LT L++ + +S + L LN+ ++ D+G + S++ L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
+L++ N I D+ + + + L S N+ IG+ G +++ + L S+++S I D
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGD 240
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
++ ++ + L SLN+ ++ D G ++ + L L++ + D G ++ K L
Sbjct: 241 SGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQL 300
Query: 375 RS 376
RS
Sbjct: 301 RS 302
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 79/155 (50%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G ++ +Q+LTLL++ + + +S + L
Sbjct: 148 KHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLLDISDNHIGDKGVKFISEMKQLTSF 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N++ + + G + S++ L L++ N I D + + + L SLN+ +GDEG
Sbjct: 208 NISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKFISEMKQLTSLNIAINRVGDEGA 267
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
++ + L S+N+S + D ++ ++ + L+S
Sbjct: 268 KLISEMKQLRSLNISDNELGDEGVKFISEMKQLRS 302
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I + G +H+ + LTSL+ NN I +G K + + L LD+ G+ +
Sbjct: 141 EIGNVGAKHISEMKQLTSLNIC-NNRIGDEGAKFISEMQQLTLLDISDNHIGDKGVKFIS 199
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L S NI + I + K +S + L SL +S + + DSG+ ++ +++LT LN+
Sbjct: 200 EMKQLTSFNIS-DDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKFISEMKQLTSLNIA 258
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
V +S + L LN++ +L D+G + S++ L+
Sbjct: 259 INRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQLR 301
>gi|158299381|ref|XP_319486.4| AGAP010289-PA [Anopheles gambiae str. PEST]
gi|157014337|gb|EAA14603.5| AGAP010289-PA [Anopheles gambiae str. PEST]
Length = 381
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 125/218 (57%), Gaps = 15/218 (6%)
Query: 179 LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALG--SLFYL 233
NLK L +S C +VTDS + + + L+ + +L L GC +T L +A G +L YL
Sbjct: 159 FPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSNITNTGLSKETADGTPALEYL 218
Query: 234 NLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIG 289
L CQ LSD+ ++ + SL+ +NL F +TD L HL ++ LE LNL +C I
Sbjct: 219 GLQDCQRLSDEALRHIAQGLTSLRSINLSFCVSVTDSGLKHLARMSRLEELNLRACDNIS 278
Query: 290 DEGLVNLT-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT- 345
D G+ LT G ++ ++++SF ++D ++ ++ GL L+SL+L A QITD GL+ +
Sbjct: 279 DIGMAYLTEGCNSISTLDVSFCDKVADQAMVHISQGLFQLRSLSLSACQITDEGLSRIAK 338
Query: 346 SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG 381
SL L L++ +RITD G + NLR++++ G
Sbjct: 339 SLHDLETLNIGQCSRITDRGLEIVAAELINLRAIDLYG 376
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 117/248 (47%), Gaps = 29/248 (11%)
Query: 182 LKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
+K +Q+ C +TD I A+ L +LNL C S+LG + N
Sbjct: 136 IKRVQVGCYNITDMAIGHAFAADFPNLKVLNLSLCKQVTD-----SSLGRITQHLKNIEV 190
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT- 297
L GC + G K E D G LE L L C + DE L ++
Sbjct: 191 LELGGCSNITNTGLSK-------ETAD-------GTPALEYLGLQDCQRLSDEALRHIAQ 236
Query: 298 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLD 354
GLT+L SINLSF ++D L+ LA +S L+ LNL A I+D G+A LT ++ LD
Sbjct: 237 GLTSLRSINLSFCVSVTDSGLKHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLD 296
Query: 355 L-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTD 411
+ F ++ D ++ + LRSL + +TD G+ I K L L LN+ Q +TD
Sbjct: 297 VSFCDKVADQAMVHISQGLFQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITD 356
Query: 412 KTLELISG 419
+ LE+++
Sbjct: 357 RGLEIVAA 364
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 32/248 (12%)
Query: 62 VDLSGSDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR--------GLSN 107
V + ++TD + H D NL+ L+ + C Q++D L +HL+ G SN
Sbjct: 139 VQVGCYNITDMAIGHAFAADFPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSN 198
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWC 165
+T+ + TA G A L L L+ C R+ + +GL L S+N+ +C
Sbjct: 199 ITNTGLSKE---TADGTPA------LEYLGLQDCQRLSDEALRHIAQGLTSLRSINLSFC 249
Query: 166 NCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACL 221
+TDS +K L+ ++ L+ L + +C ++D G+AYL +G ++ L++ C A A +
Sbjct: 250 VSVTDSGLKHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMV 309
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECL-VHLKGLTNL 278
L L L+L+ CQ++D+G + +K + L+ LN+G + ITD L + L NL
Sbjct: 310 HISQGLFQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITDRGLEIVAAELINL 369
Query: 279 ESLNLDSC 286
+++L C
Sbjct: 370 RAIDLYGC 377
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 95/180 (52%), Gaps = 15/180 (8%)
Query: 299 LTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 355
NL+ +NLS ++D SL ++ L +++ L L IT+TGL+ T+ G L+
Sbjct: 159 FPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSNITNTGLSKETA-DGTPALEY 217
Query: 356 FG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
G R++D ++ + +LRS L C +TD+G+KH+ +S L LNL N
Sbjct: 218 LGLQDCQRLSDEALRHIAQGLTSLRSINLSFCVS-VTDSGLKHLARMSRLEELNLRACDN 276
Query: 409 LTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
++D + L G + +L+VS ++ + H+ + L LRSL+L +C++T + R+
Sbjct: 277 ISDIGMAYLTEGCNSISTLDVSFCDKVADQAMVHISQGLFQLRSLSLSACQITDEGLSRI 336
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNF 90
L++L L ++D M + +S+ ++D+S D V D ++H+ + L+SL +
Sbjct: 266 LEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMVHISQGLFQLRSLSLSA 325
Query: 91 CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI 144
C QI+D GL + + L +L +L+ + + IT +G++ A LINL +DL CTR+
Sbjct: 326 C-QITDEGLSRIAKSLHDLETLNIGQCSRITDRGLEIVAAELINLRAIDLYGCTRL 380
>gi|149242645|pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 173/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 116
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ LN + N +TD +KPL
Sbjct: 117 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKPL 168
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 169 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 221
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 222 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 277
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 278 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 327
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 328 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 366
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 125/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 110
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ +N G
Sbjct: 111 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF---GNQVT 163
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 164 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 219
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 220 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 273
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 274 ----NISPLAGLTALT 285
>gi|83749483|ref|ZP_00946473.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|83723837|gb|EAP71025.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
Length = 546
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 156/349 (44%), Gaps = 4/349 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ ++LSG+ + L + L LD + C I L + LT+L+ RN
Sbjct: 180 LVRLNLSGNRIGPVEARLLANHPTLTELDVSHC-GIGPEEARALAASARLTTLNASRN-G 237
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ +G++A L LDL L +L +LN+ N I + L+
Sbjct: 238 VGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNR-NRIDVQGARALAD 296
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L SL I + + D+G+ L +LT LN+E V A + +L+ +L L ++
Sbjct: 297 CKTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAAVGAHGVRALADSKTLTSLRIDN- 355
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D+G + + SL L+ N I L T L +LNL GIGD G
Sbjct: 356 NIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLA 415
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
T L S+++ G+SD +LA +L +L+ I D G AL + LT LD+
Sbjct: 416 NTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSN 475
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
I ++GA L L SL++ + +AGV+ + +L+ L +S NC
Sbjct: 476 EIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSFNC 524
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 166/382 (43%), Gaps = 8/382 (2%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
TD+ L L L+ LD + C I+ G+ HL L L L+ N I + A
Sbjct: 144 TDADLAGLPPT--LKELDLSRCRGCITAAGIAHLSRLP-LVRLNLS-GNRIGPVEARLLA 199
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L +LD+ C L +L +LN N + ++ L L SL +S
Sbjct: 200 NHPTLTELDVSHCGIGPEEARALAASARLTTLNASR-NGVGGEGVRALVDCKTLTSLDLS 258
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ + D+ L ++LT LN+ + +L+ +L L++ + D G E
Sbjct: 259 ENGLGDAEAQRLGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEAL 318
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
L LN+ + + L L SL +D+ IGDEG L T+L +++
Sbjct: 319 LANAQLTTLNVERAAVGAHGVRALADSKTLTSLRIDN-NIGDEGAKTLAASTSLTTLHSE 377
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
GI + LA + L +LNL I D G A + T L L + ++D+GA L
Sbjct: 378 SNGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRL 437
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
K L +L+ + DAG + + +LT L++S N + + ++ T L SL++
Sbjct: 438 AASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSN-EIGNAGARALAANTRLASLDL 496
Query: 429 SNSRITSAGLRHLKPLKNLRSL 450
N+R+ AG+R L + L SL
Sbjct: 497 RNNRMLEAGVRALLVNRTLSSL 518
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 107/261 (40%), Gaps = 46/261 (17%)
Query: 201 KGLQKLTLL------NLEGCPVTAACLDSLSALGSLFYLNLNRCQ--LSDDGCEKFSKIG 252
L+KLTL +L G P T L L+L+RC+ ++ G S++
Sbjct: 132 PALEKLTLAGAFTDADLAGLPPT------------LKELDLSRCRGCITAAGIAHLSRL- 178
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
L LNL N I L L L++ CGIG E L L ++N S G+
Sbjct: 179 PLVRLNLSGNRIGPVEARLLANHPTLTELDVSHCGIGPEEARALAASARLTTLNASRNGV 238
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
+R L +L SL+L + D L + LT L++ RI GA L + K
Sbjct: 239 GGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNRNRIDVQGARALADCK 298
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
L SL+I G + DAGV+ L N LT +LNV +
Sbjct: 299 TLTSLDIGGNSIGDAGVEA-----------LLANAQLT--------------TLNVERAA 333
Query: 433 ITSAGLRHLKPLKNLRSLTLE 453
+ + G+R L K L SL ++
Sbjct: 334 VGAHGVRALADSKTLTSLRID 354
>gi|71744514|ref|XP_803787.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831052|gb|EAN76557.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 490
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 120/463 (25%), Positives = 211/463 (45%), Gaps = 24/463 (5%)
Query: 12 NELVYSRCLTEVSLEAFRDC-ALQDLCL-GQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
+ L+ + + SL + R C ++Q L G+YP + + + S G +LS +
Sbjct: 40 HHLILTEKVERESLRSLRLCTSIQTLRFEGEYPFADLSPIPELRSLG------ELSIEEA 93
Query: 70 TD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ +K+ L++L+ I G L+ L NL L ++ + + A
Sbjct: 94 PKLENFVGIKNLPQLKALEVAE-APIRGGCLQTLTAGCNLVKLCL--DSCPYLKDVSPLA 150
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI- 187
+ L L + +C I G+ +L L L L + + + + ++ L T+L +L I
Sbjct: 151 EMTALEHLAICKCVGIETGIGSLGKLPALRELYLIGTS-MRGNSLRGLGATTSLLNLCIV 209
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
SC +TD + ++ +Q L L LE C + L L +L+ L+L+ + D +
Sbjct: 210 SCGCLTD--VLHIADVQVLRQLTLESCTSLEEGVGKLGGLPALYELDLSYSSIVDVFLQG 267
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN 306
S SL LNL + +++TD + L L L+ LNL SC G+ +L L L ++
Sbjct: 268 LSSSRSLVKLNLSWCDQLTD--VSPLAELKTLKYLNLQSCEAVVAGIGDLGKLPGLYELD 325
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
LS T I+D +LR L SL L++ + +TD L+AL SL L L+L G
Sbjct: 326 LSCTPITDCALRDLCSSRSLVRLDISSCDNLTD--LSALVSLKTLGELNLDACTEVKQGI 383
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
+ LR L+ +TD ++ + SL +L L ++TD + ++ + L
Sbjct: 384 GNISQLPELRRLDGTCLPITDDSLRDLSASRSLVVLCLDTCMDITD--VSCLAAVKTLEE 441
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 468
+++++ G+ L L LRS+ L K+ + + LQ+R
Sbjct: 442 ISLNSCLSVEKGVEALTTLPRLRSVNLRGVKIDSEVLSELQAR 484
>gi|422811192|ref|ZP_16859602.1| internalin P4 [Listeria monocytogenes FSL J1-208]
gi|378750825|gb|EHY61417.1| internalin P4 [Listeria monocytogenes FSL J1-208]
Length = 776
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 145/307 (47%), Gaps = 51/307 (16%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD++PLSGL L+ + S+++D L LS L +L
Sbjct: 115 SDLRPLSGLIKLEVISFYHSQISD--------------------------LSPLSELINL 148
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L LN Q+SD + +L LN+ N+I+D L L L+NL L+ I D
Sbjct: 149 TSLTLNDNQISD--ISPLANSTNLTTLNMSSNKISD--LSPLSNLSNLNKLDFRENQISD 204
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
L L+GL NL S+ ++ ISD + LA L++L +LN+ QITD +
Sbjct: 205 --LSPLSGLINLTSLTINANKISD--ISPLANLTNLTTLNMGINQITDLSSLSGLISLVD 260
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
HL + +ITD A L + NLRSL+I I DLSSL+ L + +L
Sbjct: 261 LHLSV--NQITDISA--LSDLTNLRSLDIDHN--------QIIDLSSLSNLTNLKRLHLV 308
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RD 469
D + I+ L+GL++L RI ++ + PL +L + LE V +N I + S ++
Sbjct: 309 DNQISSITPLSGLINLTDLEIRINQ--VKDVSPLSSLAN--LEMLYVDSNQISDISSLKN 364
Query: 470 LPNLVSF 476
L NLV F
Sbjct: 365 LKNLVLF 371
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 172/386 (44%), Gaps = 67/386 (17%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ L + N+++ S +N + +G++ L NL +L LE L L GL+KLE
Sbjct: 72 DELNSVENISADSGLYDNVASIEGVQY---LNNLTELRLENVDNSVSDLRPLSGLIKLEV 128
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
++ SD+ PLS L NL SL ++ ++++D I+ L LT LN+ + +
Sbjct: 129 ISFYHSQI---SDLSPLSELINLTSLTLNDNQISD--ISPLANSTNLTTLNMSSNKI--S 181
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
L LS L +L L+ Q+SD L L GL NL
Sbjct: 182 DLSPLSNLSNLNKLDFRENQISD--------------------------LSPLSGLINLT 215
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
SL +++ I D + L LTNL ++N+ I+D S SL L+L QITD
Sbjct: 216 SLTINANKISD--ISPLANLTNLTTLNMGINQITDLSSLSGL--ISLVDLHLSVNQITD- 270
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
++AL+ LT L LD+ +I D + L N NL+ L L D + I LS L
Sbjct: 271 -ISALSDLTNLRSLDIDHNQIIDLSS--LSNLTNLKRLH-----LVDNQISSITPLSGL- 321
Query: 400 LLNLSQNCNLTD--------KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
NLTD K + +S L L L V +++I + + LK LKNL +
Sbjct: 322 -------INLTDLEIRINQVKDVSPLSSLANLEMLYVDSNQI--SDISSLKNLKNLVLFS 372
Query: 452 LESCKVTANDIKRLQSRDLPNLVSFR 477
S + + ++ LPN ++ R
Sbjct: 373 AHSQTIVNKPVNYQKNLVLPNNITDR 398
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 153/316 (48%), Gaps = 38/316 (12%)
Query: 59 LLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L +VD S SD+ SGLI L+ S S QISD L L L NLTSL+ N
Sbjct: 107 LENVDNSVSDLRPLSGLIKLEVISFYHS-------QISD--LSPLSELINLTSLTLNDNQ 157
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ A NL L++ +I L L L L L+ + N I SD+ PLS
Sbjct: 158 I---SDISPLANSTNLTTLNM-SSNKI-SDLSPLSNLSNLNKLDFR-ENQI--SDLSPLS 209
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
GL NL SL I+ +K++D I+ L L LT LN+ +T S +L++N
Sbjct: 210 GLINLTSLTINANKISD--ISPLANLTNLTTLNMGINQITDLSSLSGLISLVDLHLSVN- 266
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
Q++D S + +L+ L++ N+I D L L LTNL+ L+L I + L+
Sbjct: 267 -QITD--ISALSDLTNLRSLDIDHNQIID--LSSLSNLTNLKRLHLVDNQIS--SITPLS 319
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
GL NL + + + D + L+ L++L+ L +D+ QI+D ++SL L +L LF
Sbjct: 320 GLINLTDLEIRINQVKD--VSPLSSLANLEMLYVDSNQISD-----ISSLKNLKNLVLFS 372
Query: 358 AR---ITDSGAAYLRN 370
A I + Y +N
Sbjct: 373 AHSQTIVNKPVNYQKN 388
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 23/226 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ ++L ++++S + ++D L L + SNL LDF QISD L L GL NLTSL+
Sbjct: 165 ANSTNLTTLNMSSNKISD--LSPLSNLSNLNKLDFREN-QISD--LSPLSGLINLTSLTI 219
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NA + A L NL L++ +I + ++ L++ N IT D+
Sbjct: 220 ---NANKISDISPLANLTNLTTLNM-GINQITDLSSLSGLISLVD-LHLS-VNQIT--DI 271
Query: 174 KPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
LS LTNL+SL I +++ D S ++ L L++L L++ + +T LS L +L
Sbjct: 272 SALSDLTNLRSLDIDHNQIIDLSSLSNLTNLKRLHLVDNQISSITP-----LSGLINLTD 326
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L + Q+ D S + +L++L + N+I+D + LK L NL
Sbjct: 327 LEIRINQVKD--VSPLSSLANLEMLYVDSNQISD--ISSLKNLKNL 368
>gi|261331843|emb|CBH14837.1| leucine-rich repeat protein (LRRP, pseudogene),putative [Trypanosoma
brucei gambiense DAL972]
Length = 1517
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 144/544 (26%), Positives = 215/544 (39%), Gaps = 117/544 (21%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L +N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 624 ALNELNLSDCFEINAGWEALEKLQ--QLHVAILSNTHITDGDISHFSKCKNLVTLDLSFC 681
Query: 92 IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G+ +I
Sbjct: 682 DKLLD-----VTALSNITTLEDLNLSNCSKIRKGLSVLGELPRLRVLNVKGVLLEDSVIG 736
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ KL LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 737 SLGNGKSFAKLSLENC-KGFGDVKPLSNLVTLEELNLHYCDKVT-SGMGTLGSLPQLRVL 794
Query: 186 QI--------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 218
+ C K+T S IA L L++L N++ C
Sbjct: 795 DLGRTQADNNSLENICTSSIPLVLLNLSHCKKITSISTIASLTALEEL---NIDNCCNVT 851
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 277
+ + L L L+ +++D+ S+ SL LNL F +ITD + L +T
Sbjct: 852 SGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNLAFCKDITD--VTALSKITM 909
Query: 278 LESLNLDSCGIGDEGLVNLTGLT------------------NLESI----NLSFTGISDG 315
LE LNLD C +G+ L L N+ S+ +L+ S G
Sbjct: 910 LEELNLDCCHNIRKGIETLGKLPKARILSMKECYMETDMRNNVPSLGIVSHLNSWKASQG 969
Query: 316 SLRKLAGL----------------SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
+ K G+ SL LNL+ R + + AL+++ L L L A+
Sbjct: 970 TYPKHEGMLHGDGYAQQCSILGNSKSLVKLNLE-RSMGFISVKALSNIATLEELVLDHAQ 1028
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+ +F L L + TD K+I + SL LNLS +TD + +
Sbjct: 1029 ----EVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTD--ISV 1082
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVS 475
+S L+ L LN+S G L L LR L K+TA DI L S + L L
Sbjct: 1083 LSSLSTLEELNISECEQIRKGWESLGKLPLLRVAILSDTKITAKDIVCLSSCKTLVKLKF 1142
Query: 476 FRPE 479
FR E
Sbjct: 1143 FRCE 1146
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 112/400 (28%), Positives = 169/400 (42%), Gaps = 34/400 (8%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLSG+ V D+ L L DC +L+ L+ ++CIQ++D + L + L+ IT
Sbjct: 353 LDLSGAPVEDNFLKDLCDCGSLERLNLSYCIQLTD--INPLSNAAATEELNLNGCRRIT- 409
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGL--VNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+GM L L L ++ L V G + SL+ NC DM LS +
Sbjct: 410 RGMGVVWVLPKLRVLHMKDMHLSEPSLDSVGTGGPLVKVSLD----NCAGFGDMTLLSSI 465
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L+ L I SG+ L L L L G P LN+
Sbjct: 466 VTLEELNIQKCVDIISGVGCLGTLPYLVYLTWCGLPWYTTVPR---------VLNIKEAH 516
Query: 240 LSDDGCEKFSKI-GSLKVLNLGFNEITDECLVHLKGLTN---LESLNLDSCGIGDEGLVN 295
+S F+ I S +L L IT L +++ L N LE L+L C D +
Sbjct: 517 ISS---LDFTGICASKSLLQLNMESITG--LSNVEALANILTLEKLSLLGCNGIDAVIGC 571
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L L+ ++LS T + SLR L ++ SLNL + T ++ ++SL L L+L
Sbjct: 572 LGNPPQLKMLDLSGTNTDNESLRSLCLSQTMVSLNL-SHCWKMTNMSHISSLEALNELNL 630
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
++G L + L + +TD + H +L L+LS DK L+
Sbjct: 631 SDCFEINAGWEALEKLQQLHVAILSNTHITDGDISHFSKCKNLVTLDLS----FCDKLLD 686
Query: 416 L--ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
+ +S +T L LN+SN GL L L LR L ++
Sbjct: 687 VTALSNITTLEDLNLSNCSKIRKGLSVLGELPRLRVLNVK 726
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 162/372 (43%), Gaps = 30/372 (8%)
Query: 98 GLEHLRGLSNLTSLS-FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLM 155
G ++ LSN+ +L ++A + +F+ L L L+L + T I+G + N+
Sbjct: 1006 GFISVKALSNIATLEELVLDHAQEVCCIPSFSCLPRLRVLNL-KYTDINGDVTKNISESK 1064
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L SLN+ C +TD + LS L+ L+ L IS + G L L L + L
Sbjct: 1065 SLRSLNLSHCKWVTD--ISVLSSLSTLEELNISECEQIRKGWESLGKLPLLRVAILSDTK 1122
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+TA + LS+ +L L RC+ D + KI SL+ L I C LKGL
Sbjct: 1123 ITAKDIVCLSSCKTLVKLKFFRCEELSDVTVVY-KIQSLEEL------IVKNCSDGLKGL 1175
Query: 276 TNLESLN----LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+L S LV+ G L N+ SD S+ + SL L +
Sbjct: 1176 NAPGTLPRLRFFASAKCERMLLVHSHGCVFLLLRNVRG---SDISVESIGTSKSLVRLTI 1232
Query: 332 DA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ +TDT L+ +T L L L G L L+SL++ GL+D
Sbjct: 1233 EVGEDLTDT--TPLSDITSLEELSLRECGDNLGGVGTLEKLPRLKSLDL---GLSDISNS 1287
Query: 391 HIKDL---SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
+ D+ S+T LNLS N LTD + IS LT L LN+ ++G L L L
Sbjct: 1288 TLNDICLSRSITSLNLSNNYELTD--ISHISNLTALEELNLRGCYHITSGWEALSELPRL 1345
Query: 448 RSLTLESCKVTA 459
R L LES +VT
Sbjct: 1346 RVLNLESARVTT 1357
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 110/437 (25%), Positives = 185/437 (42%), Gaps = 76/437 (17%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
+ + G HL + L L + + ++ + L NL L+L + +
Sbjct: 242 VDNNGARHLFNIGTLEELVIA--DTMQLANIRGISRLTNLKCLELNSTDIDDSCVRRICA 299
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
+KL L++ CN I D+ P+S L L+ L + SC +T GI L L +L +L+L
Sbjct: 300 CVKLFKLSVSECNNIMDA--TPISQLAALEELNLNSCYHIT-KGIGTLGMLLRLRVLDLS 356
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------ 250
G PV L L GSL LNL+ C QL+D +GC + ++
Sbjct: 357 GAPVEDNFLKDLCDCGSLERLNLSYCIQLTDINPLSNAAATEELNLNGCRRITRGMGVVW 416
Query: 251 -IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS 308
+ L+VL++ +++ L + L ++LD+C G GD L L+ + LE +N+
Sbjct: 417 VLPKLRVLHMKDMHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQ 474
Query: 309 -----FTGISDGSLRKLAGLSSL------------KSLNLDARQITD---TGLAA----- 343
+G+ G L L L L + LN+ I+ TG+ A
Sbjct: 475 KCVDIISGV--GCLGTLPYLVYLTWCGLPWYTTVPRVLNIKEAHISSLDFTGICASKSLL 532
Query: 344 ---LTSLTGLTHLD------------LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
+ S+TGL++++ L G D+ L N L+ L++ G +
Sbjct: 533 QLNMESITGLSNVEALANILTLEKLSLLGCNGIDAVIGCLGNPPQLKMLDLSGTNTDNES 592
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
++ + ++ LNLS +T+ + IS L L LN+S+ +AG L+ L+ L
Sbjct: 593 LRSLCLSQTMVSLNLSHCWKMTN--MSHISSLEALNELNLSDCFEINAGWEALEKLQQLH 650
Query: 449 SLTLESCKVTANDIKRL 465
L + +T DI
Sbjct: 651 VAILSNTHITDGDISHF 667
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 120/469 (25%), Positives = 194/469 (41%), Gaps = 79/469 (16%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++L+ +D+ DS + + C L L + C I D + L+ L L+
Sbjct: 274 SRLTNLKCLELNSTDIDDSCVRRICACVKLFKLSVSECNNIMDAT--PISQLAALEELNL 331
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
IT +G+ L+ L LDL L +L LE LN+ +C I +D+
Sbjct: 332 NSCYHIT-KGIGTLGMLLRLRVLDLSGAPVEDNFLKDLCDCGSLERLNLSYC--IQLTDI 388
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
PLS + L ++ C ++T G+ + L KL +L+++ ++ LDS+ G L
Sbjct: 389 NPLSNAAATEELNLNGCRRIT-RGMGVVWVLPKLRVLHMKDMHLSEPSLDSVGTGGPLVK 447
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-----G 287
++L+ C GF ++T L + LE LN+ C G
Sbjct: 448 VSLDNCA--------------------GFGDMT-----LLSSIVTLEELNIQKCVDIISG 482
Query: 288 IGDEG----LVNLT--GLTNLESI----NLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
+G G LV LT GL ++ N+ IS + SL LN+++ IT
Sbjct: 483 VGCLGTLPYLVYLTWCGLPWYTTVPRVLNIKEAHISSLDFTGICASKSLLQLNMES--IT 540
Query: 338 D-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK------ 390
+ + AL ++ L L L G D+ L N L+ L++ G + ++
Sbjct: 541 GLSNVEALANILTLEKLSLLGCNGIDAVIGCLGNPPQLKMLDLSGTNTDNESLRSLCLSQ 600
Query: 391 -----------------HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
HI L +L LNLS +C + E + L L +SN+ I
Sbjct: 601 TMVSLNLSHCWKMTNMSHISSLEALNELNLS-DCFEINAGWEALEKLQQLHVAILSNTHI 659
Query: 434 TSAGLRHLKPLKNLRSLTLESC----KVTA-NDIKRLQSRDLPNLVSFR 477
T + H KNL +L L C VTA ++I L+ +L N R
Sbjct: 660 TDGDISHFSKCKNLVTLDLSFCDKLLDVTALSNITTLEDLNLSNCSKIR 708
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 132/514 (25%), Positives = 204/514 (39%), Gaps = 117/514 (22%)
Query: 37 CLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFN 89
CL + +N K+ D+ S+ SL S++LS VTD + L S L+ L+ +
Sbjct: 1038 CLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTDISV--LSSLSTLEELNIS 1095
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C QI G E L L L ++ + ITA+ + + LVKL RC + V
Sbjct: 1096 ECEQIRKG-WESLGKLP-LLRVAILSDTKITAKDIVCLSSCKTLVKLKFFRCEELSDVTV 1153
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTL 208
K + LE L +K C+ +K L+ L L+ + +K + + G L L
Sbjct: 1154 VYK-IQSLEELIVKNCS----DGLKGLNAPGTLPRLRFFASAKCERMLLVHSHGCVFLLL 1208
Query: 209 LNLEGCPVTAACLDS--------------------LSALGSLFYLNLNRCQLSDDGCEKF 248
N+ G ++ + + LS + SL L+L C + G
Sbjct: 1209 RNVRGSDISVESIGTSKSLVRLTIEVGEDLTDTTPLSDITSLEELSLRECGDNLGGVGTL 1268
Query: 249 SKIGSLKVLNLGFNEIT-----DECLV------------------HLKGLTNLESLNLDS 285
K+ LK L+LG ++I+ D CL H+ LT LE LNL
Sbjct: 1269 EKLPRLKSLDLGLSDISNSTLNDICLSRSITSLNLSNNYELTDISHISNLTALEELNLRG 1328
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGIS---DGSLRKLAGLSSLKSLNLDARQITDT--- 339
C G L+ L L +NL ++ DG ++ SL +LN+ +TD
Sbjct: 1329 CYHITSGWEALSELPRLRVLNLESARVTTRYDGYY--ISRCKSLVTLNIQLSDMTDASYI 1386
Query: 340 -------------------GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
G +AL +L L LDLF +RITD LRN + ++E
Sbjct: 1387 ANIKTLEELHIGECDELRWGFSALFTLPRLRILDLFMSRITDED---LRNIQPPHTIE-- 1441
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT----LELISGLTGLVSLNVSNSRITSA 436
LNLS NL D T ++ I L L+S + R+
Sbjct: 1442 -------------------ELNLSYCENLNDITPLGRIKSIKNLHFLLSYDA--RRLREE 1480
Query: 437 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 470
G R L L L + +++ V+++ ++ L+ R L
Sbjct: 1481 GFRSLLELPCLSWVGVKNAYVSSDILRELRKRRL 1514
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 31/319 (9%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L +LN+ +C ITD + LS +T L+ L + C GI L L K +L+++ C +
Sbjct: 887 LNTLNLAFCKDITD--VTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECYM 944
Query: 217 TAACLDSLSALGSLFYLNLNRC----------QLSDDG-CEKFSKIGSLKVLNLGFNEIT 265
+++ +LG + +LN + L DG ++ S +G+ K L + N
Sbjct: 945 ETDMRNNVPSLGIVSHLNSWKASQGTYPKHEGMLHGDGYAQQCSILGNSKSL-VKLNLER 1003
Query: 266 DECLVHLKGLTN---LESLNLDS----CGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
+ +K L+N LE L LD C I + + L L +NL +T I+ +
Sbjct: 1004 SMGFISVKALSNIATLEELVLDHAQEVCCIP-----SFSCLPRLRVLNLKYTDINGDVTK 1058
Query: 319 KLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
++ SL+SLNL + +TD ++ L+SL+ L L++ G L LR
Sbjct: 1059 NISESKSLRSLNLSHCKWVTD--ISVLSSLSTLEELNISECEQIRKGWESLGKLPLLRVA 1116
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
+ +T + + +L L + L+D T ++ + L L V N G
Sbjct: 1117 ILSDTKITAKDIVCLSSCKTLVKLKFFRCEELSDVT--VVYKIQSLEELIVKNCSDGLKG 1174
Query: 438 LRHLKPLKNLRSLTLESCK 456
L L LR C+
Sbjct: 1175 LNAPGTLPRLRFFASAKCE 1193
>gi|320165418|gb|EFW42317.1| tyrosine-protein kinase CSK [Capsaspora owczarzaki ATCC 30864]
Length = 953
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 129/280 (46%), Gaps = 3/280 (1%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L L++ + N IT +GLT L +L + +++T GL LT L+
Sbjct: 19 FTGLTALTELSLLY-NQITGISAGTFTGLTALTALYFASNQITSIPADAFTGLTALTHLS 77
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-KIGSLKVLNLGFNEITDECL 269
L+ +T+ + ++L +L YL+L Q++ F+ + +L L+L N+IT +
Sbjct: 78 LQYNQITSISGTAFTSLTALTYLSLQYNQITSISGTAFTFNLTALTYLSLDSNQITSIPV 137
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
GLT L L+L + I + TGLT L S+ L I+ GL +L L
Sbjct: 138 GAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQITSIPAAACTGLPALTEL 197
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+L QIT A T LT LT+L + +IT A + L L + G +T
Sbjct: 198 SLGINQITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAALTDLHLDGNQITSIPD 257
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
L++LT L L QN +T L GL ++L++S
Sbjct: 258 FSFTGLTALTTLAL-QNNPITTLPPGLFKGLPNALALSLS 296
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 118/253 (46%), Gaps = 8/253 (3%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+ +N IT+ AF GL L +L L + T I G GL L +L N IT
Sbjct: 5 YINSNPITSIPTNAFTGLTALTELSLLYNQITGISAG--TFTGLTALTALYFA-SNQITS 61
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-LG 228
+GLT L L + +++T SG A+ L LT L+L+ +T+ + + L
Sbjct: 62 IPADAFTGLTALTHLSLQYNQITSISGTAF-TSLTALTYLSLQYNQITSISGTAFTFNLT 120
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L YL+L+ Q++ F+ + +L L+L N+IT + GLT L SL L + I
Sbjct: 121 ALTYLSLDSNQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQI 180
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
TGL L ++L I+ GL++L L+++ QIT A T L
Sbjct: 181 TSIPAAACTGLPALTELSLGINQITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLA 240
Query: 349 GLTHLDLFGARIT 361
LT L L G +IT
Sbjct: 241 ALTDLHLDGNQIT 253
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 111/246 (45%), Gaps = 2/246 (0%)
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
P+T+ ++ + L +L L+L Q++ F+ + +L L N+IT G
Sbjct: 10 PITSIPTNAFTGLTALTELSLLYNQITGISAGTFTGLTALTALYFASNQITSIPADAFTG 69
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDA 333
LT L L+L I T LT L ++L + I+ S L++L L+LD+
Sbjct: 70 LTALTHLSLQYNQITSISGTAFTSLTALTYLSLQYNQITSISGTAFTFNLTALTYLSLDS 129
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QIT + A T LT LT+L L+ +IT L SL + +T
Sbjct: 130 NQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQITSIPAAACT 189
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
L +LT L+L N +T + +GLT L L+V N++ITS L L L L+
Sbjct: 190 GLPALTELSLGIN-QITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAALTDLHLD 248
Query: 454 SCKVTA 459
++T+
Sbjct: 249 GNQITS 254
>gi|85679218|gb|ABC72025.1| InlA [Listeria monocytogenes]
gi|85679232|gb|ABC72032.1| InlA [Listeria monocytogenes]
Length = 794
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 311
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 312 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 361
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 362 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 400
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 127
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 128 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 181
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 182 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 236
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 237 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|28210241|ref|NP_781185.1| internalin A-like protein/ S-layer protein [Clostridium tetani E88]
gi|28202677|gb|AAO35122.1| internalin A-like protein/putative S-layer protein [Clostridium
tetani E88]
Length = 695
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 173/371 (46%), Gaps = 62/371 (16%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S L LK NL++L + + LE LRGL+NL +L N + LI
Sbjct: 372 SNLEPLKSMDNLENL---YLTKTKVVSLEPLRGLTNLKALVINETNV---SDLTPIKNLI 425
Query: 132 NLVKLDLERCTRIHGGLVNLKG---LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
NL ER T LV+L G L+ LESL+I N S++ + LTNLKSL I+
Sbjct: 426 NL-----ERLTLGDNKLVSLAGIENLVNLESLDINKNNV---SNLASIRDLTNLKSLNIN 477
Query: 189 CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ VTD S + LK L++++ LN G L +L+AL L ++ L+
Sbjct: 478 ENNVTDLSVVTNLKNLERIS-LNKNGV----TSLGALAALPELEWVTAKENGLT------ 526
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
V L+ L+ L LDS I D L +L LT+LE+++L
Sbjct: 527 --------------------STVGLQNALKLKELFLDSNQISD--LSSLANLTSLETLSL 564
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
ISD S L+ L+ +K+L L I +A L S+ LT L + I+D A
Sbjct: 565 RTNNISDVS--SLSDLTRMKNLYLHKNNI--GSIAPLASMENLTRLYVGKNNISDISA-- 618
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
+ N KNL++L I +++ G + L SL L+++ N +TD + + GL L +
Sbjct: 619 VANMKNLKTLSIGENMVSNIG--PVSGLQSLETLDVADNF-ITDASPAI--GLPNLKDIM 673
Query: 428 VSNSRITSAGL 438
+ N+++ A +
Sbjct: 674 LLNTKVPEAQI 684
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 172/343 (50%), Gaps = 51/343 (14%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
AG+ NL+ DL + NL+ L +++L + ++PL GLTNLK+L
Sbjct: 352 LAGIENLI--DLRVLNAGKNNISNLEPLKSMDNLENLYLTKTKVVSLEPLRGLTNLKALV 409
Query: 187 ISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
I+ + V+D + I L L++LTL + V+ A +++L L S L++N+ +S+
Sbjct: 410 INETNVSDLTPIKNLINLERLTL--GDNKLVSLAGIENLVNLES---LDINKNNVSN--L 462
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI----------------- 288
+ +LK LN+ N +TD +V L NLE ++L+ G+
Sbjct: 463 ASIRDLTNLKSLNINENNVTDLSVVT--NLKNLERISLNKNGVTSLGALAALPELEWVTA 520
Query: 289 GDEGLVNLTGLTN---LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+ GL + GL N L+ + L ISD L LA L+SL++L+L I+D +++L+
Sbjct: 521 KENGLTSTVGLQNALKLKELFLDSNQISD--LSSLANLTSLETLSLRTNNISD--VSSLS 576
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTL-LNL 403
LT + +L L I A L + +NL L + ++D + V ++K+L +L++ N+
Sbjct: 577 DLTRMKNLYLHKNNI--GSIAPLASMENLTRLYVGKNNISDISAVANMKNLKTLSIGENM 634
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSA----GLRHLK 442
N +SGL L +L+V+++ IT A GL +LK
Sbjct: 635 VSNIG-------PVSGLQSLETLDVADNFITDASPAIGLPNLK 670
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 115/432 (26%), Positives = 202/432 (46%), Gaps = 78/432 (18%)
Query: 57 SSLLSVDLSGSDVTD----SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
+L S+DLS +++ D SGL +LK+ + ++ +I+D ++ L GL NL L+
Sbjct: 103 ENLQSLDLSNNEIKDLGSLSGLKYLKELTLYKN-------KITD--VKALDGLKNLEKLN 153
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCT-------------RI----HGGLVNLKGLM 155
R N +G+K GL L +LDL + + RI G+ N + L
Sbjct: 154 LRDNKVKNIEGLK---GLEKLRELDLGKNSVFQPKPLKDLKNLRILNLESNGIGNAEDLE 210
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L+ + + T D++PL LTN+ L + + VT I LK + L LN+
Sbjct: 211 ELKQVEHLILSNNTVDDVEPLLTLTNVNKLYLDDNPVT--HIGKLKDMTNLKRLNINNDS 268
Query: 216 VTA-ACLDSLSALGSLFYLN----LNRCQLSD---------------------DGCEKFS 249
+ A L L L + N L+ +L+D D EK
Sbjct: 269 IEDLAELKKFKNLQWLKFKNQEMVLDNKKLNDLLVDPNKEVKFADKNLEFAIRDKIEKPK 328
Query: 250 KIGSLKVLNLGFN---EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI- 305
G++K +L ++ D+ + +L G+ NL ++L G + NL L +++++
Sbjct: 329 --GAIKKADLQRVTQLDLWDKNVTNLAGIENL--IDLRVLNAGKNNISNLEPLKSMDNLE 384
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
NL T SL L GL++LK+L ++ ++D L + +L L L L ++
Sbjct: 385 NLYLTKTKVVSLEPLRGLTNLKALVINETNVSD--LTPIKNLINLERLTLGDNKLV--SL 440
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
A + N NL SL+I +++ I+DL++L LN+++N N+TD L +++ L L
Sbjct: 441 AGIENLVNLESLDINKNNVSNLA--SIRDLTNLKSLNINEN-NVTD--LSVVTNLKNLER 495
Query: 426 LNVSNSRITSAG 437
++++ + +TS G
Sbjct: 496 ISLNKNGVTSLG 507
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 146/335 (43%), Gaps = 60/335 (17%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTA 218
LN+K N D+ L NL+SL +S +++ D G ++ LK L++LTL + V A
Sbjct: 86 LNLKSKNI---KDISGLEFFENLQSLDLSNNEIKDLGSLSGLKYLKELTLYKNKITDVKA 142
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L L +L LNL ++ + E + L+ L+LG N + LK L NL
Sbjct: 143 -----LDGLKNLEKLNLRDNKVKN--IEGLKGLEKLRELDLGKNSVFQPK--PLKDLKNL 193
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
LNL+S GIG+ +L L +E + LS + D + L L+++ L LD +T
Sbjct: 194 RILNLESNGIGNAE--DLEELKQVEHLILSNNTVDD--VEPLLTLTNVNKLYLDDNPVTH 249
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
G L +T L L++ I D A L+ FKNL+ L+ + K + DL
Sbjct: 250 IG--KLKDMTNLKRLNINNDSIED--LAELKKFKNLQWLKFKNQEMV-LDNKKLNDL--- 301
Query: 399 TLLNLSQNCNLTDKTLEL---------------------------------ISGLTGLVS 425
L++ ++ DK LE ++G+ L+
Sbjct: 302 -LVDPNKEVKFADKNLEFAIRDKIEKPKGAIKKADLQRVTQLDLWDKNVTNLAGIENLID 360
Query: 426 LNVSNS-RITSAGLRHLKPLKNLRSLTLESCKVTA 459
L V N+ + + L LK + NL +L L KV +
Sbjct: 361 LRVLNAGKNNISNLEPLKSMDNLENLYLTKTKVVS 395
>gi|887862|gb|AAA69530.1| internalin, partial [Listeria monocytogenes]
Length = 344
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 173/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 24 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 77
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L++ N +TD +KPL
Sbjct: 78 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSL--GNQVTD--LKPL 129
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 130 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 182
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 183 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLPGLTKLTELKLGANQISNIXP 238
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 239 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 288
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 289 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 327
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 128/281 (45%), Gaps = 56/281 (19%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 19 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 71
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ ++L G
Sbjct: 72 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSL---GNQVT 124
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 125 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 180
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--------KTLELISGLTGLVSLN 427
L + G L D G L+SLT NLTD L + GLT L L
Sbjct: 181 ELSLNGNQLKDIGT-----LASLT--------NLTDLDLANNQISNLAPLPGLTKLTELK 227
Query: 428 VSNSRITS----AGLRHL-------------KPLKNLRSLT 451
+ ++I++ AGL L P+ NL++LT
Sbjct: 228 LGANQISNIXPLAGLTALTNLELNENQLEDISPISNLKNLT 268
>gi|207743099|ref|YP_002259491.1| lrr-gala family type III effector protein (gala 5) [Ralstonia
solanacearum IPO1609]
gi|206594496|emb|CAQ61423.1| lrr-gala family type III effector protein (gala 5) [Ralstonia
solanacearum IPO1609]
Length = 526
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 156/349 (44%), Gaps = 4/349 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ ++LSG+ + L + L LD + C I L + LT+L+ RN
Sbjct: 160 LVRLNLSGNRIGPVEARLLANHPTLTELDVSHC-GIGPEEARALAASARLTTLNASRN-G 217
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ +G++A L LDL L +L +LN+ N I + L+
Sbjct: 218 VGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNR-NRIDVQGARALAD 276
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L SL I + + D+G+ L +LT LN+E V A + +L+ +L L ++
Sbjct: 277 CKTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAAVGAHGVRALADSKTLTSLRIDN- 335
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D+G + + SL L+ N I L T L +LNL GIGD G
Sbjct: 336 NIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLA 395
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
T L S+++ G+SD +LA +L +L+ I D G AL + LT LD+
Sbjct: 396 NTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSN 455
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
I ++GA L L SL++ + +AGV+ + +L+ L +S NC
Sbjct: 456 EIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSFNC 504
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 166/382 (43%), Gaps = 8/382 (2%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
TD+ L L L+ LD + C I+ G+ HL L L L+ N I + A
Sbjct: 124 TDADLAGLPPT--LKELDLSRCRGCITAAGIAHLSRLP-LVRLNLS-GNRIGPVEARLLA 179
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L +LD+ C L +L +LN N + ++ L L SL +S
Sbjct: 180 NHPTLTELDVSHCGIGPEEARALAASARLTTLNASR-NGVGGEGVRALVDCKTLTSLDLS 238
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ + D+ L ++LT LN+ + +L+ +L L++ + D G E
Sbjct: 239 ENGLGDAEAQRLGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEAL 298
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
L LN+ + + L L SL +D+ IGDEG L T+L +++
Sbjct: 299 LANAQLTTLNVERAAVGAHGVRALADSKTLTSLRIDN-NIGDEGAKTLAASTSLTTLHSE 357
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
GI + LA + L +LNL I D G A + T L L + ++D+GA L
Sbjct: 358 SNGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRL 417
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
K L +L+ + DAG + + +LT L++S N + + ++ T L SL++
Sbjct: 418 AASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSN-EIGNAGARALAANTRLASLDL 476
Query: 429 SNSRITSAGLRHLKPLKNLRSL 450
N+R+ AG+R L + L SL
Sbjct: 477 RNNRMLEAGVRALLVNRTLSSL 498
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 107/259 (41%), Gaps = 46/259 (17%)
Query: 203 LQKLTLL------NLEGCPVTAACLDSLSALGSLFYLNLNRCQ--LSDDGCEKFSKIGSL 254
L+KLTL +L G P T L L+L+RC+ ++ G S++ L
Sbjct: 114 LEKLTLAGAFTDADLAGLPPT------------LKELDLSRCRGCITAAGIAHLSRL-PL 160
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
LNL N I L L L++ CGIG E L L ++N S G+
Sbjct: 161 VRLNLSGNRIGPVEARLLANHPTLTELDVSHCGIGPEEARALAASARLTTLNASRNGVGG 220
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+R L +L SL+L + D L + LT L++ RI GA L + K L
Sbjct: 221 EGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNRNRIDVQGARALADCKTL 280
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
SL+I G + DAGV+ L N LT +LNV + +
Sbjct: 281 TSLDIGGNSIGDAGVEA-----------LLANAQLT--------------TLNVERAAVG 315
Query: 435 SAGLRHLKPLKNLRSLTLE 453
+ G+R L K L SL ++
Sbjct: 316 AHGVRALADSKTLTSLRID 334
>gi|294358397|gb|ADE73851.1| InlA [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 173/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I+DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQIRDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|298359896|gb|ADI77527.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|167862002|gb|ACA05700.1| InlA [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821396|gb|ACL37842.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|150371726|dbj|BAF65678.1| internalin A [Listeria monocytogenes]
gi|194326151|emb|CAQ77234.1| internalin A [Listeria monocytogenes]
gi|298360180|gb|ADI77669.1| internalin A [Listeria monocytogenes]
gi|298360390|gb|ADI77774.1| internalin A [Listeria monocytogenes]
gi|298360416|gb|ADI77787.1| internalin A [Listeria monocytogenes]
gi|298360620|gb|ADI77889.1| internalin A [Listeria monocytogenes]
gi|298360656|gb|ADI77907.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|290993931|ref|XP_002679586.1| hypothetical protein NAEGRDRAFT_47566 [Naegleria gruberi]
gi|284093203|gb|EFC46842.1| hypothetical protein NAEGRDRAFT_47566 [Naegleria gruberi]
Length = 675
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 158/317 (49%), Gaps = 60/317 (18%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLN 210
GL L +LN++ C+ ITD+ +K L+ ++ NL L + C+KV DS ++Y+ +L L+
Sbjct: 337 GLQTLHTLNVQGCHYITDNGVKYLTYISQNLTHLNLRGCTKVNDSAMSYISQFSQLNYLD 396
Query: 211 LEGC-PVTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
+ GC VT + LS L YL+L C Q++D+G S++ L+ L L
Sbjct: 397 MTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGVRYLSEMTELEDLTL------ 450
Query: 266 DECLVHL--KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
+C H+ KGLT L ++SC + ++NLTG LE +G+ GSL KL L
Sbjct: 451 -QCCRHITAKGLTQL----VNSC--QNIRVLNLTGCHLLE-----ISGVRSGSLPKLEKL 498
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
S + + +D L ++ T NL+ L +
Sbjct: 499 SM-----MGCKLTSDNCLRVISDWTC-----------------------NLKELVLSFSD 530
Query: 384 L-TDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVS-LNVSNSR-ITSAGL 438
+ TD G++ I + +L+ LNL + N+TDK+LE IS L+ +V LN++ R T+ GL
Sbjct: 531 MITDGGIERVIINSKNLSHLNLKKCSNITDKSLECISKHLSNVVEYLNLTGVRGFTNGGL 590
Query: 439 RHLKPLKNLRSLTLESC 455
++L+ +L+ ++ C
Sbjct: 591 KYLENCTSLKEFVIQRC 607
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 36/277 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDC---SNLQSLDFNFCIQISDGGL 99
VND M I SQ S L +D++G +VTD G+ HL + L+ LD FC Q++D G+
Sbjct: 378 VNDSAMSYI-SQFSQLNYLDMTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGV 436
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+L ++ L L+ + ITA+G+ N+ L+L C + V L KLE
Sbjct: 437 RYLSEMTELEDLTLQCCRHITAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLE 496
Query: 159 SLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPV 216
L++ C +D+ ++ +S T NLK L +S S +TD GI + ++N +
Sbjct: 497 KLSMMGCKLTSDNCLRVISDWTCNLKELVLSFSDMITDGGI-------ERVIINSKN--- 546
Query: 217 TAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGS--LKVLNL-GFNEITDECLVHL 272
L +LNL +C ++D E SK S ++ LNL G T+ L +L
Sbjct: 547 -------------LSHLNLKKCSNITDKSLECISKHLSNVVEYLNLTGVRGFTNGGLKYL 593
Query: 273 KGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS 308
+ T+L+ + C + +EGL +L +LE +++S
Sbjct: 594 ENCTSLKEFVIQRCIHVNNEGLAHLAYCPSLEILDIS 630
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 34/196 (17%)
Query: 306 NLSFTGISDGSLRKL-AGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDLFG-ARIT 361
N FT + + R+ GL +L +LN+ ITD G+ LT ++ LTHL+L G ++
Sbjct: 320 NFGFTSKRNPNSREPNYGLQTLHTLNVQGCHYITDNGVKYLTYISQNLTHLNLRGCTKVN 379
Query: 362 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD---LSSLTLLNLSQNCNLTDKTLELI 417
DS +Y+ F L L++ G +TD GVKH+ + L L+L+ +TD+ + +
Sbjct: 380 DSAMSYISQFSQLNYLDMTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGVRYL 439
Query: 418 SGLTGLVSLNVSNSR-ITSAGLR-----------------HLKPLKNLRS--------LT 451
S +T L L + R IT+ GL HL + +RS L+
Sbjct: 440 SEMTELEDLTLQCCRHITAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLEKLS 499
Query: 452 LESCKVTANDIKRLQS 467
+ CK+T+++ R+ S
Sbjct: 500 MMGCKLTSDNCLRVIS 515
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 106/240 (44%), Gaps = 37/240 (15%)
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLT-NLESINLS-FTGISDGSLRKLAGLSSLKSLN 330
GL L +LN+ C I D G+ LT ++ NL +NL T ++D ++ ++ S L L+
Sbjct: 337 GLQTLHTLNVQGCHYITDNGVKYLTYISQNLTHLNLRGCTKVNDSAMSYISQFSQLNYLD 396
Query: 331 LDA-RQITDTGLAALTS---LTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGL 384
+ +TD G+ L+ T L +LDL F ++TD G YL L L + C +
Sbjct: 397 MTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGVRYLSEMTELEDLTLQCCRHI 456
Query: 385 TDAGVKH-IKDLSSLTLLNLS-----------------------QNCNLT-DKTLELISG 419
T G+ + ++ +LNL+ C LT D L +IS
Sbjct: 457 TAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLEKLSMMGCKLTSDNCLRVISD 516
Query: 420 LT-GLVSLNVSNS-RITSAGL-RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
T L L +S S IT G+ R + KNL L L+ C + S+ L N+V +
Sbjct: 517 WTCNLKELVLSFSDMITDGGIERVIINSKNLSHLNLKKCSNITDKSLECISKHLSNVVEY 576
>gi|223006802|gb|ACM69358.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|85679224|gb|ABC72028.1| InlA [Listeria monocytogenes]
Length = 794
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 311
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 312 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 361
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 362 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 400
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 127
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 128 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 181
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 182 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 236
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 237 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|126143308|gb|ABN80096.1| InlA [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821357|gb|ACL37816.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESIIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 343
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L + +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESIIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|167862040|gb|ACA05719.1| InlA [Listeria monocytogenes]
gi|194326153|emb|CAQ77235.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|313485065|gb|ADR53005.1| InlA [Listeria monocytogenes]
Length = 801
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821300|gb|ACL37778.1| internalin A [Listeria monocytogenes]
gi|219821378|gb|ACL37830.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLKYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|130774813|gb|ABO32419.1| InlA [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLSNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ LK LTNL L L S I D + L+GLTNL+ LSF G L+ LA L++L
Sbjct: 157 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|46906689|ref|YP_013078.1| internalin A [Listeria monocytogenes serotype 4b str. F2365]
gi|254932755|ref|ZP_05266114.1| internalin A [Listeria monocytogenes HPB2262]
gi|405748809|ref|YP_006672275.1| internalin A [Listeria monocytogenes ATCC 19117]
gi|405751670|ref|YP_006675135.1| internalin A [Listeria monocytogenes SLCC2378]
gi|417316727|ref|ZP_12103366.1| internalin A [Listeria monocytogenes J1-220]
gi|424713328|ref|YP_007014043.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
gi|424822183|ref|ZP_18247196.1| Internalin-A [Listeria monocytogenes str. Scott A]
gi|50400895|sp|Q723K6.1|INLA_LISMF RecName: Full=Internalin-A; Flags: Precursor
gi|46879954|gb|AAT03255.1| internalin A [Listeria monocytogenes serotype 4b str. F2365]
gi|130774757|gb|ABO32393.1| InlA [Listeria monocytogenes]
gi|130774763|gb|ABO32396.1| InlA [Listeria monocytogenes]
gi|130774781|gb|ABO32405.1| InlA [Listeria monocytogenes]
gi|130774785|gb|ABO32407.1| InlA [Listeria monocytogenes]
gi|130774789|gb|ABO32409.1| InlA [Listeria monocytogenes]
gi|167861870|gb|ACA05634.1| InlA [Listeria monocytogenes]
gi|167861880|gb|ACA05639.1| InlA [Listeria monocytogenes]
gi|167861882|gb|ACA05640.1| InlA [Listeria monocytogenes]
gi|167861884|gb|ACA05641.1| InlA [Listeria monocytogenes]
gi|167861886|gb|ACA05642.1| InlA [Listeria monocytogenes]
gi|167861896|gb|ACA05647.1| InlA [Listeria monocytogenes]
gi|167861898|gb|ACA05648.1| InlA [Listeria monocytogenes]
gi|167861910|gb|ACA05654.1| InlA [Listeria monocytogenes]
gi|167861912|gb|ACA05655.1| InlA [Listeria monocytogenes]
gi|167861952|gb|ACA05675.1| InlA [Listeria monocytogenes]
gi|167861958|gb|ACA05678.1| InlA [Listeria monocytogenes]
gi|167861960|gb|ACA05679.1| InlA [Listeria monocytogenes]
gi|167861966|gb|ACA05682.1| InlA [Listeria monocytogenes]
gi|167861988|gb|ACA05693.1| InlA [Listeria monocytogenes]
gi|167861996|gb|ACA05697.1| InlA [Listeria monocytogenes]
gi|167862008|gb|ACA05703.1| InlA [Listeria monocytogenes]
gi|167862010|gb|ACA05704.1| InlA [Listeria monocytogenes]
gi|167862014|gb|ACA05706.1| InlA [Listeria monocytogenes]
gi|167862016|gb|ACA05707.1| InlA [Listeria monocytogenes]
gi|194239380|emb|CAQ76830.1| internalin A [Listeria monocytogenes]
gi|194239394|emb|CAQ76837.1| internalin A [Listeria monocytogenes]
gi|194326167|emb|CAQ77242.1| internalin A [Listeria monocytogenes]
gi|223006786|gb|ACM69350.1| internalin A [Listeria monocytogenes]
gi|223006788|gb|ACM69351.1| internalin A [Listeria monocytogenes]
gi|223006798|gb|ACM69356.1| internalin A [Listeria monocytogenes]
gi|223006804|gb|ACM69359.1| internalin A [Listeria monocytogenes]
gi|223006810|gb|ACM69362.1| internalin A [Listeria monocytogenes]
gi|293584308|gb|EFF96340.1| internalin A [Listeria monocytogenes HPB2262]
gi|294358391|gb|ADE73848.1| InlA [Listeria monocytogenes]
gi|294358403|gb|ADE73854.1| InlA [Listeria monocytogenes]
gi|298359884|gb|ADI77521.1| internalin A [Listeria monocytogenes]
gi|298359898|gb|ADI77528.1| internalin A [Listeria monocytogenes]
gi|298359902|gb|ADI77530.1| internalin A [Listeria monocytogenes]
gi|298359908|gb|ADI77533.1| internalin A [Listeria monocytogenes]
gi|298359940|gb|ADI77549.1| internalin A [Listeria monocytogenes]
gi|298359948|gb|ADI77553.1| internalin A [Listeria monocytogenes]
gi|298360056|gb|ADI77607.1| internalin A [Listeria monocytogenes]
gi|298360094|gb|ADI77626.1| internalin A [Listeria monocytogenes]
gi|298360148|gb|ADI77653.1| internalin A [Listeria monocytogenes]
gi|298360270|gb|ADI77714.1| internalin A [Listeria monocytogenes]
gi|298360288|gb|ADI77723.1| internalin A [Listeria monocytogenes]
gi|298360324|gb|ADI77741.1| internalin A [Listeria monocytogenes]
gi|298360326|gb|ADI77742.1| internalin A [Listeria monocytogenes]
gi|298360350|gb|ADI77754.1| internalin A [Listeria monocytogenes]
gi|298360362|gb|ADI77760.1| internalin A [Listeria monocytogenes]
gi|298360456|gb|ADI77807.1| internalin A [Listeria monocytogenes]
gi|298360480|gb|ADI77819.1| internalin A [Listeria monocytogenes]
gi|298360508|gb|ADI77833.1| internalin A [Listeria monocytogenes]
gi|298360520|gb|ADI77839.1| internalin A [Listeria monocytogenes]
gi|298360554|gb|ADI77856.1| internalin A [Listeria monocytogenes]
gi|298360632|gb|ADI77895.1| internalin A [Listeria monocytogenes]
gi|298360634|gb|ADI77896.1| internalin A [Listeria monocytogenes]
gi|298360662|gb|ADI77910.1| internalin A [Listeria monocytogenes]
gi|328475915|gb|EGF46639.1| internalin A [Listeria monocytogenes J1-220]
gi|332310863|gb|EGJ23958.1| Internalin-A [Listeria monocytogenes str. Scott A]
gi|340052073|emb|CBY84388.1| internalin A [Listeria monocytogenes]
gi|340052075|emb|CBY84389.1| internalin A [Listeria monocytogenes]
gi|404218009|emb|CBY69373.1| internalin A (LPXTG motif) [Listeria monocytogenes ATCC 19117]
gi|404220870|emb|CBY72233.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2378]
gi|424012512|emb|CCO63052.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
gi|443428812|gb|AGC92205.1| internalin A [Listeria monocytogenes]
gi|443428814|gb|AGC92206.1| internalin A [Listeria monocytogenes]
gi|443428816|gb|AGC92207.1| internalin A [Listeria monocytogenes]
gi|443428818|gb|AGC92208.1| internalin A [Listeria monocytogenes]
gi|443428826|gb|AGC92212.1| internalin A [Listeria monocytogenes]
gi|443428836|gb|AGC92217.1| internalin A [Listeria monocytogenes]
gi|443428840|gb|AGC92219.1| internalin A [Listeria monocytogenes]
gi|443428852|gb|AGC92225.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|404406915|ref|YP_006689630.1| internalin A [Listeria monocytogenes SLCC2376]
gi|130774829|gb|ABO32427.1| InlA [Listeria monocytogenes]
gi|167861972|gb|ACA05685.1| InlA [Listeria monocytogenes]
gi|194326147|emb|CAQ77232.1| internalin A [Listeria monocytogenes]
gi|404241064|emb|CBY62464.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2376]
Length = 800
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|313485075|gb|ADR53008.1| InlA [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|298359724|gb|ADI77441.1| truncated internalin A [Listeria monocytogenes]
gi|298359728|gb|ADI77443.1| truncated internalin A [Listeria monocytogenes]
gi|298359760|gb|ADI77459.1| truncated internalin A [Listeria monocytogenes]
gi|298359768|gb|ADI77463.1| truncated internalin A [Listeria monocytogenes]
gi|298359778|gb|ADI77468.1| truncated internalin A [Listeria monocytogenes]
gi|298359784|gb|ADI77471.1| truncated internalin A [Listeria monocytogenes]
gi|298359796|gb|ADI77477.1| truncated internalin A [Listeria monocytogenes]
gi|298359800|gb|ADI77479.1| truncated internalin A [Listeria monocytogenes]
gi|298359816|gb|ADI77487.1| truncated internalin A [Listeria monocytogenes]
gi|298359840|gb|ADI77499.1| truncated internalin A [Listeria monocytogenes]
gi|298359850|gb|ADI77504.1| truncated internalin A [Listeria monocytogenes]
gi|298359852|gb|ADI77505.1| truncated internalin A [Listeria monocytogenes]
gi|298359860|gb|ADI77509.1| truncated internalin A [Listeria monocytogenes]
gi|298359916|gb|ADI77537.1| truncated internalin A [Listeria monocytogenes]
gi|298359928|gb|ADI77543.1| truncated internalin A [Listeria monocytogenes]
gi|298359936|gb|ADI77547.1| truncated internalin A [Listeria monocytogenes]
gi|298359962|gb|ADI77560.1| truncated internalin A [Listeria monocytogenes]
gi|298359996|gb|ADI77577.1| truncated internalin A [Listeria monocytogenes]
gi|298360016|gb|ADI77587.1| truncated internalin A [Listeria monocytogenes]
gi|298360018|gb|ADI77588.1| truncated internalin A [Listeria monocytogenes]
gi|298360022|gb|ADI77590.1| truncated internalin A [Listeria monocytogenes]
gi|298360024|gb|ADI77591.1| truncated internalin A [Listeria monocytogenes]
gi|298360046|gb|ADI77602.1| truncated internalin A [Listeria monocytogenes]
gi|298360048|gb|ADI77603.1| truncated internalin A [Listeria monocytogenes]
gi|298360058|gb|ADI77608.1| truncated internalin A [Listeria monocytogenes]
gi|298360062|gb|ADI77610.1| truncated internalin A [Listeria monocytogenes]
gi|298360088|gb|ADI77623.1| truncated internalin A [Listeria monocytogenes]
gi|298360120|gb|ADI77639.1| truncated internalin A [Listeria monocytogenes]
gi|298360152|gb|ADI77655.1| truncated internalin A [Listeria monocytogenes]
gi|298360168|gb|ADI77663.1| truncated internalin A [Listeria monocytogenes]
gi|298360204|gb|ADI77681.1| truncated internalin A [Listeria monocytogenes]
gi|298360210|gb|ADI77684.1| truncated internalin A [Listeria monocytogenes]
gi|298360224|gb|ADI77691.1| truncated internalin A [Listeria monocytogenes]
gi|298360248|gb|ADI77703.1| truncated internalin A [Listeria monocytogenes]
gi|298360250|gb|ADI77704.1| truncated internalin A [Listeria monocytogenes]
gi|298360272|gb|ADI77715.1| truncated internalin A [Listeria monocytogenes]
gi|298360308|gb|ADI77733.1| truncated internalin A [Listeria monocytogenes]
gi|298360340|gb|ADI77749.1| truncated internalin A [Listeria monocytogenes]
gi|298360382|gb|ADI77770.1| truncated internalin A [Listeria monocytogenes]
gi|298360392|gb|ADI77775.1| truncated internalin A [Listeria monocytogenes]
gi|298360408|gb|ADI77783.1| truncated internalin A [Listeria monocytogenes]
gi|298360418|gb|ADI77788.1| truncated internalin A [Listeria monocytogenes]
gi|298360430|gb|ADI77794.1| truncated internalin A [Listeria monocytogenes]
gi|298360438|gb|ADI77798.1| truncated internalin A [Listeria monocytogenes]
gi|298360444|gb|ADI77801.1| truncated internalin A [Listeria monocytogenes]
gi|298360446|gb|ADI77802.1| truncated internalin A [Listeria monocytogenes]
gi|298360476|gb|ADI77817.1| truncated internalin A [Listeria monocytogenes]
gi|298360482|gb|ADI77820.1| truncated internalin A [Listeria monocytogenes]
gi|298360484|gb|ADI77821.1| truncated internalin A [Listeria monocytogenes]
gi|298360486|gb|ADI77822.1| truncated internalin A [Listeria monocytogenes]
gi|298360490|gb|ADI77824.1| truncated internalin A [Listeria monocytogenes]
gi|298360512|gb|ADI77835.1| truncated internalin A [Listeria monocytogenes]
gi|298360526|gb|ADI77842.1| truncated internalin A [Listeria monocytogenes]
gi|298360534|gb|ADI77846.1| truncated internalin A [Listeria monocytogenes]
gi|298360574|gb|ADI77866.1| truncated internalin A [Listeria monocytogenes]
gi|298360584|gb|ADI77871.1| truncated internalin A [Listeria monocytogenes]
gi|298360618|gb|ADI77888.1| truncated internalin A [Listeria monocytogenes]
gi|298360622|gb|ADI77890.1| truncated internalin A [Listeria monocytogenes]
gi|298360626|gb|ADI77892.1| truncated internalin A [Listeria monocytogenes]
gi|298360628|gb|ADI77893.1| truncated internalin A [Listeria monocytogenes]
gi|298360646|gb|ADI77902.1| truncated internalin A [Listeria monocytogenes]
gi|298360650|gb|ADI77904.1| truncated internalin A [Listeria monocytogenes]
gi|298360664|gb|ADI77911.1| truncated internalin A [Listeria monocytogenes]
gi|298360686|gb|ADI77922.1| truncated internalin A [Listeria monocytogenes]
gi|298360702|gb|ADI77930.1| truncated internalin A [Listeria monocytogenes]
gi|298360718|gb|ADI77938.1| truncated internalin A [Listeria monocytogenes]
gi|443428870|gb|AGC92234.1| truncated internalin A [Listeria monocytogenes]
Length = 605
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821390|gb|ACL37838.1| internalin A [Listeria monocytogenes]
Length = 744
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 343
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|219821309|gb|ACL37784.1| internalin A [Listeria monocytogenes]
gi|219821393|gb|ACL37840.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|322952092|gb|ADX21045.1| internalin A [Listeria monocytogenes]
gi|322952094|gb|ADX21046.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|405954703|gb|EKC22070.1| F-box/LRR-repeat protein 14 [Crassostrea gigas]
Length = 403
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 114/418 (27%), Positives = 195/418 (46%), Gaps = 65/418 (15%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR--GLSNLTSLSFRRN 116
+L++ S V D G + + C + + +N C+ HLR S SL R
Sbjct: 19 VLTIIFSYLSVRDKGRVA-QVCVKWRDVAYNRCVWRGVCAKLHLRRANPSLFPSLVKRGI 77
Query: 117 NAITAQGMK-----AFAGLINLVKLDLERCTRI--HG-GLVNLKGLMKLESLNIKWCNCI 168
+ +K G+ N+ L+L C + H G + L + LN+ C I
Sbjct: 78 KRVQILSLKRSLRDVVVGIPNVETLNLSGCFVVTDHALGHAFSQDLPCMTVLNLSLCKQI 137
Query: 169 TDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLS 225
TD+ + ++ LTNL+ L++ CS +T++G+ + GL+KL LNL C +
Sbjct: 138 TDNSLGRIAQYLTNLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDV----- 192
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLN 282
+G L G + G+L++ NLG + +TD L HL
Sbjct: 193 GIGHL------------AGNSPNAAAGTLEIENLGLQDCQKLTDLSLKHL---------- 230
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTG 340
SCG L NL+++NLSF G ++D ++ L+ + +++ +NL + I+D G
Sbjct: 231 --SCG-----------LVNLKTLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNISDVG 277
Query: 341 LAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKH-IKDLS 396
L L + +T LD+ F ++ D G +L + +LR++ + ++D G+ + L
Sbjct: 278 LGYLAEGGSRITSLDVSFCDKVGDEGLVHLAQGLFSLRNISLSACNISDEGLNRLVNTLQ 337
Query: 397 SLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 452
+T LN+ Q +TDK L LI+ L L S+++ +RIT+ GL + L+ L +L L
Sbjct: 338 DITTLNIGQCVRITDKGLSLIADHLKNLQSIDLYGCTRITTVGLERIMQLRGLTTLNL 395
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 142/279 (50%), Gaps = 42/279 (15%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA ++L ++L G S++T++GL+ + L++L+ C ISD G+ H
Sbjct: 137 ITDNSLGRIAQYLTNLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGH 196
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK----GLMKL 157
L G S A AG + + L L+ C ++ ++LK GL+ L
Sbjct: 197 LAGNSP-----------------NAAAGTLEIENLGLQDCQKLTD--LSLKHLSCGLVNL 237
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP 215
++LN+ +C +TDS +K LS + ++ + + SC ++D G+ YL +G ++T L++ C
Sbjct: 238 KTLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNISDVGLGYLAEGGSRITSLDVSFCD 297
Query: 216 VTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNEITDECLV- 270
+ L SL ++L+ C +SD+G + + + + LN+G ITD+ L
Sbjct: 298 KVGDEGLVHLAQGLFSLRNISLSACNISDEGLNRLVNTLQDITTLNIGQCVRITDKGLSL 357
Query: 271 ---HLKGLTNLESLNLDSC----GIGDEGLVNLTGLTNL 302
HLK NL+S++L C +G E ++ L GLT L
Sbjct: 358 IADHLK---NLQSIDLYGCTRITTVGLERIMQLRGLTTL 393
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 142/278 (51%), Gaps = 33/278 (11%)
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC--EKFSK-IGSLKVL 257
+G++++ +L+L+ + D + + ++ LNL+ C + D FS+ + + VL
Sbjct: 75 RGIKRVQILSLK-----RSLRDVVVGIPNVETLNLSGCFVVTDHALGHAFSQDLPCMTVL 129
Query: 258 NLGF-NEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINL-SFTGI 312
NL +ITD L + + LTNLE L L C I + GL+ + GL L+++NL S I
Sbjct: 130 NLSLCKQITDNSLGRIAQYLTNLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHI 189
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT--HLDLFGARITDSGAAYLRN 370
SD + LAG S + +I + GL LT L+ HL + L N
Sbjct: 190 SDVGIGHLAGNSPNAAAG--TLEIENLGLQDCQKLTDLSLKHL-----------SCGLVN 236
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVS 429
K L +L CG +TD+GVK + + ++ +NL N++D L L G + + SL+VS
Sbjct: 237 LKTL-NLSFCGS-VTDSGVKFLSKMQTMREINLRSCDNISDVGLGYLAEGGSRITSLDVS 294
Query: 430 N-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
++ GL HL + L +LR+++L +C ++ + RL
Sbjct: 295 FCDKVGDEGLVHLAQGLFSLRNISLSACNISDEGLNRL 332
>gi|290988772|ref|XP_002677066.1| predicted protein [Naegleria gruberi]
gi|284090672|gb|EFC44322.1| predicted protein [Naegleria gruberi]
Length = 289
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 110/221 (49%)
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R L+D+ ++ L L +G N I D + + + L L+L+ I +EG ++
Sbjct: 43 RNILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSI 102
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ L NL +N+ I+D + ++ L +L L + + +IT ++ L LT L++
Sbjct: 103 SELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIA 162
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I D GA ++ K+L+ L+I G++ G K I +L LT+L +SQN ++ D+ +
Sbjct: 163 YNNIGDEGAKFISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARM 222
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
IS + L L + + I +AG + + L L + ++
Sbjct: 223 ISEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEI 263
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 117/243 (48%), Gaps = 1/243 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N + D+ L +T L +L+I + + D+ + + +++LT L+LE + S+S
Sbjct: 44 NILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSIS 103
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L YLN+ ++D+G E S++ +L L + IT + + L NL LN+
Sbjct: 104 ELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAY 163
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAAL 344
IGDEG ++ + +L+ +++S GIS + ++ L L L + I D G +
Sbjct: 164 NNIGDEGAKFISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMI 223
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
+ + L L + I ++GA + L L+I + G I+D+ L+ L++
Sbjct: 224 SEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLSIE 283
Query: 405 QNC 407
C
Sbjct: 284 GQC 286
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 17/259 (6%)
Query: 163 KWCNCITDSDMKPLSGLTN--------------LKSLQISCSKVTDSGIAYLKGLQKLTL 208
+W N I D LS + N S+ + + + D+ L + +LT
Sbjct: 5 QWLNVIRDR--SELSMMANNHLVNQVNNEFLDCFVSITFARNILNDNWFNMLGRMTQLTT 62
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L + + + +S + L L+L Q+ ++G + S++ +L LN+G N I DE
Sbjct: 63 LEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSISELRNLTYLNIGNNPINDEG 122
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
+ + L NL L + S I + ++ L NL +N+++ I D + ++ + SLK
Sbjct: 123 IESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAYNNIGDEGAKFISEIKSLKI 182
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLF-GARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L++ I+ G +++ L LT L + I D GA + K L L I + +A
Sbjct: 183 LDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMISEMKQLNELYIQDCFIGNA 242
Query: 388 GVKHIKDLSSLTLLNLSQN 406
G I + LT L++S+N
Sbjct: 243 GAISISRMDKLTHLDISEN 261
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 142/343 (41%), Gaps = 65/343 (18%)
Query: 44 VNDKWMDVIASQGS-SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V +W++VI + S+++ + + V + L DC S+ F I ++D L
Sbjct: 2 VTKQWLNVIRDRSELSMMANNHLVNQVNNEFL----DC--FVSITFARNI-LNDNWFNML 54
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
++ LT+L NN I +K + + L LDLE
Sbjct: 55 GRMTQLTTLEIG-NNLIDDNMVKLISEMKQLTGLDLE----------------------- 90
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I + K +S L NL L I + + D GI + L LT L + +T+
Sbjct: 91 --INQIFNEGAKSISELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVSSLRITSKSAK 148
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+S L +L LN+ + D+G + S+I SLK+L++ N I+ + K ++ L+ L
Sbjct: 149 FISKLNNLTLLNIAYNNIGDEGAKFISEIKSLKILDISLNGISP---IGAKSISELDQLT 205
Query: 283 L----DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
+ + IGDEG R ++ + L L + I +
Sbjct: 206 VLYISQNFSIGDEG------------------------ARMISEMKQLNELYIQDCFIGN 241
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
G +++ + LTHLD+ I G + +R+ K+L L I G
Sbjct: 242 AGAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLSIEG 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 1/149 (0%)
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
SI + ++D L ++ L +L + I D + ++ + LT LDL +I +
Sbjct: 38 SITFARNILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNE 97
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
GA + +NL L I + D G++ I L +LT L +S + +T K+ + IS L L
Sbjct: 98 GAKSISELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVS-SLRITSKSAKFISKLNNL 156
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
LN++ + I G + + +K+L+ L +
Sbjct: 157 TLLNIAYNNIGDEGAKFISEIKSLKILDI 185
>gi|219821360|gb|ACL37818.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|112959500|gb|ABI27277.1| internalin A [Listeria monocytogenes]
gi|112959502|gb|ABI27278.1| internalin A [Listeria monocytogenes]
gi|112959510|gb|ABI27282.1| internalin A [Listeria monocytogenes]
gi|112959512|gb|ABI27283.1| internalin A [Listeria monocytogenes]
gi|112959524|gb|ABI27289.1| internalin A [Listeria monocytogenes]
gi|112959530|gb|ABI27292.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 249
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 250 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 299
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 300 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 338
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 82
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|340052071|emb|CBY84387.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|223006796|gb|ACM69355.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821369|gb|ACL37824.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|322790910|gb|EFZ15576.1| hypothetical protein SINV_11426 [Solenopsis invicta]
Length = 526
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 157/298 (52%), Gaps = 26/298 (8%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSA-LGSL 230
L G+ NL++L +S C +TD GI A+ + LT LNL C VT L ++ L +L
Sbjct: 229 LKGVPNLEALNLSGCYNITDIGITNAFCQEYPSLTELNLSLCKQVTDTSLSRIAQYLKNL 288
Query: 231 FYLNLNRC-QLSDDGCEKFSK-IGSLKVLNL-GFNEITDECLVHLKGLTN--------LE 279
+L L C +++ G + + LK L+L ++D + HL GL LE
Sbjct: 289 EHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDIGIAHLAGLNRETADGNLALE 348
Query: 280 SLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQ 335
L+L C + DE L +++ G T L+SINLSF I+D ++ LA +SSL+ LNL +
Sbjct: 349 HLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSCDN 408
Query: 336 ITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KH 391
I+D G+A L + +T LD+ F +I D ++ + NL+SL + ++D G+ K
Sbjct: 409 ISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKI 468
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNL 447
K L L LN+ Q LTD+ L ++ + L +++ ++IT++GL + L L
Sbjct: 469 AKTLHDLETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTSGLERIMKLPQL 526
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 157/298 (52%), Gaps = 24/298 (8%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITAQGMKAFAGLI-NL 133
LK NL++L+ + C I+D G+ + + +LT L+ +T + A + NL
Sbjct: 229 LKGVPNLEALNLSGCYNITDIGITNAFCQEYPSLTELNLSLCKQVTDTSLSRIAQYLKNL 288
Query: 134 VKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT------NLKSL 185
L+L C I G L+ GL KL+ L+++ C ++D + L+GL NL
Sbjct: 289 EHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDIGIAHLAGLNRETADGNLALE 348
Query: 186 QIS---CSKVTDSGIAYLK-GLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-Q 239
+S C +++D + ++ G L +NL C +T + + L+ + SL LNL C
Sbjct: 349 HLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSCDN 408
Query: 240 LSDDGCEKFSKIGS-LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNL 296
+SD G ++ GS + L++ F ++I D+ LVH+ +GL NL+SL+L +C I DEG+ +
Sbjct: 409 ISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKI 468
Query: 297 TG-LTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTGL 350
L +LE++N+ + ++D L +A + +LK ++L +IT +GL + L L
Sbjct: 469 AKTLHDLETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTSGLERIMKLPQL 526
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 140/271 (51%), Gaps = 29/271 (10%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA +L ++L G ++T++GL+ + L+ LD C +SD G+ H
Sbjct: 273 VTDTSLSRIAQYLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDIGIAH 332
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLES 159
L GL N TA G A L L L+ C R+ L ++ G L+S
Sbjct: 333 LAGL-----------NRETADGNLA------LEHLSLQDCQRLSDEALRHVSLGFTTLKS 375
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVT 217
+N+ +C CITDS +K L+ +++L+ L + SC ++D G+AYL +G ++T L++ C
Sbjct: 376 INLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKI 435
Query: 218 A--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHL- 272
A + L +L L+L+ CQ+SD+G K +K + L+ LN+G + +TD L +
Sbjct: 436 GDQALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRGLHTVA 495
Query: 273 KGLTNLESLNLDSC-GIGDEGLVNLTGLTNL 302
+ + NL+ ++L C I GL + L L
Sbjct: 496 ESMKNLKCIDLYGCTKITTSGLERIMKLPQL 526
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 135/280 (48%), Gaps = 54/280 (19%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
LKG+ L LNL GC N+ +++ C+++ SL LNL
Sbjct: 229 LKGVPNLEALNLSGC------------------YNITDIGITNAFCQEYP---SLTELNL 267
Query: 260 GF-NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINL-SFTGISD 314
++TD L + + L NLE L L C I + GL+ + GL L+ ++L S +SD
Sbjct: 268 SLCKQVTDTSLSRIAQYLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSD 327
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLR-NFK 372
+ LAGL+ R+ D LA L HL L R++D ++ F
Sbjct: 328 IGIAHLAGLN---------RETADGNLA-------LEHLSLQDCQRLSDEALRHVSLGFT 371
Query: 373 NLRSLE----ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLN 427
L+S+ +C +TD+GVKH+ +SSL LNL N++D + L G + + SL+
Sbjct: 372 TLKSINLSFCVC---ITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLD 428
Query: 428 VSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
VS +I L H+ + L NL+SL+L +C+++ I ++
Sbjct: 429 VSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKI 468
>gi|219821342|gb|ACL37806.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LTGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 343
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLTGLTALT 262
>gi|261331192|emb|CBH14182.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
gambiense DAL972]
Length = 490
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/434 (26%), Positives = 197/434 (45%), Gaps = 22/434 (5%)
Query: 39 GQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDG 97
G+YP + + + S G +LS + + +K+ L++L+ I G
Sbjct: 69 GEYPFADLSPIPELRSLG------ELSIEEAPKLENFVGIKNLPQLKALEVAE-APIRGG 121
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
L+ L NL L ++ + + A + L L + +C I G+ +L L L
Sbjct: 122 CLQTLTAGCNLVKLCL--DSCPYLKDVSPLAEMTALEHLAICKCVGIETGIGSLGKLPAL 179
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L + + + + ++ L T+L +L I SC +TD + ++ +Q L L LE C
Sbjct: 180 RELYLIGTS-MRGNSLRGLGATTSLLNLCIVSCGCLTD--VLHIADVQVLRQLTLESCTS 236
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 275
+ L L +L+ L+L+ + D + S SL LNL + +++TD + L L
Sbjct: 237 LEEGVGKLGGLPALYELDLSYSSIVDVFLQGLSSSRSLVKLNLSWCDQLTD--VSPLAEL 294
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-R 334
L+ LNL SC G+ +L L L ++LS T I+D +LR L SL L++ +
Sbjct: 295 KTLKYLNLQSCEAVVAGIGDLGKLPGLYELDLSCTPITDCALRDLCSSRSLVRLDISSCD 354
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+TD L+AL SL L L+L G + LR L+ +TD ++ +
Sbjct: 355 NLTD--LSALVSLKTLGELNLDACTEVKQGIGNISQLPELRRLDGTCLPITDDSLRDLSA 412
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
SL +L L ++TD + ++ + L +++++ G+ L L LRS+ L
Sbjct: 413 SRSLVVLCLDTCMDITD--VSCLAAVKTLEEISLNSCLSVEKGVEALTTLPRLRSVNLRG 470
Query: 455 CKVTANDIKRLQSR 468
K+ + + LQ+R
Sbjct: 471 VKIDSEVLSELQAR 484
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 110/403 (27%), Positives = 170/403 (42%), Gaps = 42/403 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
V L L+ C+++Q+L F +D L + L +L LS A ++ F
Sbjct: 48 VERESLRFLRLCTSIQTLRFEGEYPFAD--LSPIPELRSLGELSIEE-----APKLENFV 100
Query: 129 GLINLVKLDLERCTR--IHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
G+ NL +L I GG L L L L + C + D+ PL+ +T L+ L
Sbjct: 101 GIKNLPQLKALEVAEAPIRGGCLQTLTAGCNLVKLCLDSCPYL--KDVSPLAEMTALEHL 158
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
I ++GI L L L L L G + L L A SL L + C GC
Sbjct: 159 AICKCVGIETGIGSLGKLPALRELYLIGTSMRGNSLRGLGATTSLLNLCIVSC-----GC 213
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
+TD ++H+ + L L L+SC +EG+ L GL L +
Sbjct: 214 ------------------LTD--VLHIADVQVLRQLTLESCTSLEEGVGKLGGLPALYEL 253
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+LS++ I D L+ L+ SL LNL Q+TD ++ L L L +L+L +G
Sbjct: 254 DLSYSSIVDVFLQGLSSSRSLVKLNLSWCDQLTD--VSPLAELKTLKYLNLQSCEAVVAG 311
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L L L++ +TD ++ + SL L++S NLTD L + L L
Sbjct: 312 IGDLGKLPGLYELDLSCTPITDCALRDLCSSRSLVRLDISSCDNLTD--LSALVSLKTLG 369
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
LN+ G+ ++ L LR L +T + ++ L +
Sbjct: 370 ELNLDACTEVKQGIGNISQLPELRRLDGTCLPITDDSLRDLSA 412
>gi|219821318|gb|ACL37790.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 343
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|440802726|gb|ELR23655.1| leucine rich repeat domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 634
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 182/394 (46%), Gaps = 81/394 (20%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSL-----SFRRNNAITAQGMKAFAGLINLVK 135
LQ+L+ ++C I++ GL++LRGL++LTSL SFR +T++G+K+
Sbjct: 280 PQLQTLNLSYCPNITNHGLKYLRGLTSLTSLDLCSPSFR----VTSEGLKSLPS------ 329
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQIS-CSKVT 193
L SL+I + + +TD +K L + +L+ L IS C+KVT
Sbjct: 330 --------------------SLRSLDISYMDKLTDEGIKALRAVCPDLQVLNISKCNKVT 369
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-KIG 252
+ G+ +L KL + L C ++D+G + +
Sbjct: 370 NDGMRFLPA--KLRTIFLSHC-----------------------YNITDEGIANLAVAVP 404
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTG 311
L+ + ++ +TD+ + HL L++LNL C + +EG+ +L + ++ S+
Sbjct: 405 LLENFHFSYSSLTDDGVRHLP--RALKALNLSFCPKLTNEGMRHLPPHLHTLLLSYSYK- 461
Query: 312 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 369
I+D LR L S+ +L L +ITD GL L L LDL R++D G + L
Sbjct: 462 ITDEGLRALP--PSIATLKLSRFFEITDDGLQHLP--PALRSLDLSLCDRVSDQGMSRLP 517
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
+L C G+TDAGV + SL L+LS ++TD L + L SLN+S
Sbjct: 518 PTLAELNLSRC-DGITDAGVAQLP--RSLGKLDLSFTKHVTDACLRSLP--KALTSLNLS 572
Query: 430 N-SRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
+ IT L L PL +L L L C+ + I
Sbjct: 573 SCPEITGEALADL-PL-SLSHLFLSHCEKVTDKI 604
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 24/274 (8%)
Query: 28 FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 87
F L+ + L + D+ + +A L + S S +TD G+ HL L++L+
Sbjct: 375 FLPAKLRTIFLSHCYNITDEGIANLAVAVPLLENFHFSYSSLTDDGVRHLPRA--LKALN 432
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HG 146
+FC ++++ G+ HL + LS+ + IT +G++A I +K L R I
Sbjct: 433 LSFCPKLTNEGMRHLPPHLHTLLLSY--SYKITDEGLRALPPSIATLK--LSRFFEITDD 488
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQ 204
GL +L L SL++ C+ ++D M L L L +S C +TD+G+A L + L
Sbjct: 489 GLQHLPP--ALRSLDLSLCDRVSDQGMSRLP--PTLAELNLSRCDGITDAGVAQLPRSLG 544
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNE 263
KL L + VT ACL SL +L LNL+ C + E + + SL L L E
Sbjct: 545 KLDLSFTKH--VTDACLRSLPK--ALTSLNLSSC--PEITGEALADLPLSLSHLFLSHCE 598
Query: 264 -ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 295
+TD+ L LE+L++ SC G+ ++ L++
Sbjct: 599 KVTDKIFTSLP--RPLETLDISSCSGVVEKYLLD 630
>gi|167861906|gb|ACA05652.1| InlA [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821264|gb|ACL37754.1| internalin A [Listeria monocytogenes]
gi|219821306|gb|ACL37782.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|112959522|gb|ABI27288.1| truncated internalin A [Listeria monocytogenes]
Length = 538
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 31 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 84
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 85 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 136
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 137 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 189
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 190 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 245
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 246 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 295
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 296 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 334
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 26 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 78
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 79 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 131
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 132 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 187
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 188 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 241
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 242 ----NISPLAGLTALT 253
>gi|313485061|gb|ADR53004.1| InlA [Listeria monocytogenes]
Length = 724
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821363|gb|ACL37820.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DINPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--INPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|167861924|gb|ACA05661.1| InlA [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLSDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++L+ L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLSDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821297|gb|ACL37776.1| internalin A [Listeria monocytogenes]
gi|219821303|gb|ACL37780.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|22347566|gb|AAM95928.1| internalin A precursor [Listeria monocytogenes]
Length = 746
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 256
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 257 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 306
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 307 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 345
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 37 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 89
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|85679228|gb|ABC72030.1| InlA [Listeria monocytogenes]
Length = 794
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 311
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 312 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 361
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 362 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 400
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 127
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 128 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 181
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 182 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 236
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 237 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|167861908|gb|ACA05653.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQITDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|22347544|gb|AAM95917.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 256
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 257 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 306
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 307 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 345
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 37 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 89
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|219821288|gb|ACL37770.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|219821372|gb|ACL37826.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|290995863|ref|XP_002680502.1| predicted protein [Naegleria gruberi]
gi|284094123|gb|EFC47758.1| predicted protein [Naegleria gruberi]
Length = 350
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 111/220 (50%), Gaps = 1/220 (0%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
D+ + L +++ + D + S++ L LN+ + + + + + + NL L
Sbjct: 119 DAFKLMKGLTTFDISYTYVHDREAKIISEMTQLTSLNVSNSIRIKKSIAYFREMNNLTCL 178
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
N+ + GIG E +++ + L +++ GI + ++ L L L++ + I + G
Sbjct: 179 NIGNNGIGVECAKHVSEMKQLTILHICGNGIKFEGAKFISELQQLTKLDVSSNNIGEQGA 238
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
++ L LT+LD++ RI GA ++ K L L I + G K+I ++ L L
Sbjct: 239 KYISQLKQLTNLDIYSNRIGAQGAKHISEMKQLTRLNISYNDINVEGAKYISEMKQLINL 298
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
N+++N N+ D+ ISG+ L +L + N+ I++AG +++
Sbjct: 299 NITKN-NIGDEGARHISGMNQLTNLFIGNNNISNAGFQNI 337
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 1/207 (0%)
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
+ F + L ++ + + D + +T L SLN+ + + + + NL +
Sbjct: 119 DAFKLMKGLTTFDISYTYVHDREAKIISEMTQLTSLNVSNSIRIKKSIAYFREMNNLTCL 178
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
N+ GI + ++ + L L++ I G ++ L LT LD+ I + GA
Sbjct: 179 NIGNNGIGVECAKHVSEMKQLTILHICGNGIKFEGAKFISELQQLTKLDVSSNNIGEQGA 238
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
Y+ K L +L+I + G KHI ++ LT LN+S N ++ + + IS + L++
Sbjct: 239 KYISQLKQLTNLDIYSNRIGAQGAKHISEMKQLTRLNISYN-DINVEGAKYISEMKQLIN 297
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTL 452
LN++ + I G RH+ + L +L +
Sbjct: 298 LNITKNNIGDEGARHISGMNQLTNLFI 324
>gi|219821375|gb|ACL37828.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|219821291|gb|ACL37772.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNKVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNKVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|223006806|gb|ACM69360.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821279|gb|ACL37764.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|112961640|gb|ABI28446.1| truncated internalin A [Listeria monocytogenes]
gi|112961643|gb|ABI28448.1| truncated internalin A [Listeria monocytogenes]
gi|112961661|gb|ABI28460.1| truncated internalin A [Listeria monocytogenes]
Length = 556
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 263
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 264 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 313
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 314 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 352
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 79
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 80 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 133
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 134 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 188
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 189 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|320163976|gb|EFW40875.1| tyrosine-protein kinase CSK [Capsaspora owczarzaki ATCC 30864]
Length = 1378
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 142/326 (43%), Gaps = 7/326 (2%)
Query: 113 FRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+ ++N IT AF GL + ++ L + I G GL L +++ + N IT
Sbjct: 65 YLQSNLITNIPASAFTGLTALQVIYLTSNQIVSISSGA--FSGLSALTYVSL-FNNLITS 121
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ LT L L + + +T GL LT L+L G +T+ ++ S L +L
Sbjct: 122 IPDSLFADLTALTYLGLHGNLITSMAATAFTGLNVLTRLSLYGNQITSISANAFSNLPAL 181
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L L QL+ + F+ + +L L L NEIT L L L+LDS I D
Sbjct: 182 TTLALYDNQLTSIPADAFTGLSALTELTLYDNEITSISANSFTSLPALIILSLDSNRITD 241
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
TGLT L + LS +S S GLS L SL L +IT + A T L L
Sbjct: 242 ISANAFTGLTALNILYLSHNQLSSISANAFTGLSGLDSLTLFNNEITSIHVDAFTGLPAL 301
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNL 409
T L L IT N L+ L + +T DL++L L++S+N +
Sbjct: 302 TSLYLQSNLITSIPPFVFTNLTALQILVLAYNQITGIPANAFTADLAALNYLDVSEN-QV 360
Query: 410 TDKTLELISGLTGLVSLNVSNSRITS 435
T +GL L SL + ++ITS
Sbjct: 361 TSIPANAFAGLHSLSSLFLQGNQITS 386
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 106/244 (43%), Gaps = 4/244 (1%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ A+ L+AL + YL N Q+ FS + +L ++L N IT L
Sbjct: 74 IPASAFTGLTAL-QVIYLTSN--QIVSISSGAFSGLSALTYVSLFNNLITSIPDSLFADL 130
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
T L L L I TGL L ++L I+ S + L +L +L L Q
Sbjct: 131 TALTYLGLHGNLITSMAATAFTGLNVLTRLSLYGNQITSISANAFSNLPALTTLALYDNQ 190
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+T A T L+ LT L L+ IT A + L L + +TD L
Sbjct: 191 LTSIPADAFTGLSALTELTLYDNEITSISANSFTSLPALIILSLDSNRITDISANAFTGL 250
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
++L +L LS N L+ + +GL+GL SL + N+ ITS + L L SL L+S
Sbjct: 251 TALNILYLSHN-QLSSISANAFTGLSGLDSLTLFNNEITSIHVDAFTGLPALTSLYLQSN 309
Query: 456 KVTA 459
+T+
Sbjct: 310 LITS 313
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 114/281 (40%), Gaps = 34/281 (12%)
Query: 105 LSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDL--ERCTRIHG-GLVNLKGLMKLES 159
++LT+L++ N IT+ AF GL L +L L + T I NL L L
Sbjct: 127 FADLTALTYLGLHGNLITSMAATAFTGLNVLTRLSLYGNQITSISANAFSNLPALTTLAL 186
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+ N +T +GL+ L L + +++T L L +L+L+ +T
Sbjct: 187 YD----NQLTSIPADAFTGLSALTELTLYDNEITSISANSFTSLPALIILSLDSNRITDI 242
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
++ + L +L L L+ QLS F+ + L L L NEIT + GL L
Sbjct: 243 SANAFTGLTALNILYLSHNQLSSISANAFTGLSGLDSLTLFNNEITSIHVDAFTGLPALT 302
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSF---TGISDGSL------------------- 317
SL L S I T LT L+ + L++ TGI +
Sbjct: 303 SLYLQSNLITSIPPFVFTNLTALQILVLAYNQITGIPANAFTADLAALNYLDVSENQVTS 362
Query: 318 ---RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
AGL SL SL L QIT + LT LTHL L
Sbjct: 363 IPANAFAGLHSLSSLFLQGNQITSILTSTFQGLTALTHLIL 403
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 9/239 (3%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNL 296
+++ F+ + +L+V+ L N+I GL+ L ++L + I D +L
Sbjct: 71 ITNIPASAFTGLTALQVIYLTSNQIVSISSGAFSGLSALTYVSLFNNLITSIPDSLFADL 130
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
T LT L L I+ + GL+ L L+L QIT A ++L LT L L+
Sbjct: 131 TALTYL---GLHGNLITSMAATAFTGLNVLTRLSLYGNQITSISANAFSNLPALTTLALY 187
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
++T A L L + +T L +L +L+L N +TD +
Sbjct: 188 DNQLTSIPADAFTGLSALTELTLYDNEITSISANSFTSLPALIILSLDSN-RITDISANA 246
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
+GLT L L +S+++++S L L SLTL + ++T+ + LP L S
Sbjct: 247 FTGLTALNILYLSHNQLSSISANAFTGLSGLDSLTLFNNEITSIHVDAF--TGLPALTS 303
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 1/181 (0%)
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
P + +N ++ + +++T + GL LT+L + +T+ D+ + L ++ LN
Sbjct: 532 PSAMPSNTLTVYLQANQITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLN 591
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L L+ + + +LK L+L N+ITD GLT L L L+S I
Sbjct: 592 LQDNNLASIPASAIAGLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISAN 651
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
T L L + L I+ S AG+ +L L+L +IT A TSLT L L
Sbjct: 652 AFTSLPALAFVWLRANWITAISANAFAGV-TLTYLDLQNNRITSIPANAFTSLTALNTLT 710
Query: 355 L 355
L
Sbjct: 711 L 711
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 4/204 (1%)
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
YL N Q++ F+ + +L +L + N+IT GLT + LNL +
Sbjct: 543 YLQAN--QITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASI 600
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
+ GLT L+ ++LS I+D S + GL++L L L++ +IT A TSL L
Sbjct: 601 PASAIAGLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALA 660
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
+ L IT A L L++ +T L++L L L+ N T
Sbjct: 661 FVWLRANWITAISANAFAGV-TLTYLDLQNNRITSIPANAFTSLTALNTLTLNDN-PFTT 718
Query: 412 KTLELISGLTGLVSLNVSNSRITS 435
L GL + L+V+ S+ S
Sbjct: 719 LPPGLFKGLPNGMVLSVAFSQYLS 742
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 3/185 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GLS LT L NN IT+ AF GL + +L+L+ +
Sbjct: 548 QITSIPASAFAGLSALTIL-IMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIA 606
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L+ L++ N ITD +GLT L L ++ +++T L L + L
Sbjct: 607 GLTALKFLDLS-NNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLR 665
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+TA ++ + + +L YL+L +++ F+ + +L L L N T
Sbjct: 666 ANWITAISANAFAGV-TLTYLDLQNNRITSIPANAFTSLTALNTLTLNDNPFTTLPPGLF 724
Query: 273 KGLTN 277
KGL N
Sbjct: 725 KGLPN 729
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 10/175 (5%)
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+CG G GL +G T ++ N S T I A S+ ++ L A QIT +A
Sbjct: 507 ACGAG--GLCTCSG-TTVDCQNRSLTVIPS------AMPSNTLTVYLQANQITSIPASAF 557
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
L+ LT L +F +IT + L + L I L++L L+LS
Sbjct: 558 AGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIAGLTALKFLDLS 617
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
N +TD + +GLT L L ++++RITS L L + L + +TA
Sbjct: 618 NN-KITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRANWITA 671
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 78/191 (40%), Gaps = 26/191 (13%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
N+IT GL+ L L + + I TGLT + +NL ++ +A
Sbjct: 547 NQITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIA 606
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
GL++LK L+L +ITD + T LT L +L L RIT A
Sbjct: 607 GLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISA---------------- 650
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
L +L + L N +T + +G+T L L++ N+RITS
Sbjct: 651 --------NAFTSLPALAFVWLRANW-ITAISANAFAGVT-LTYLDLQNNRITSIPANAF 700
Query: 442 KPLKNLRSLTL 452
L L +LTL
Sbjct: 701 TSLTALNTLTL 711
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 14/236 (5%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRN--NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
Q++ + GLS LT L+ N +I+A + LI ++ LD R T I
Sbjct: 190 QLTSIPADAFTGLSALTELTLYDNEITSISANSFTSLPALI-ILSLDSNRITDISA---- 244
Query: 151 LKGLMKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
L +LNI + N ++ +GL+ L SL + +++T + GL LT
Sbjct: 245 -NAFTGLTALNILYLSHNQLSSISANAFTGLSGLDSLTLFNNEITSIHVDAFTGLPALTS 303
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDE 267
L L+ +T+ + L +L L L Q++ F+ + +L L++ N++T
Sbjct: 304 LYLQSNLITSIPPFVFTNLTALQILVLAYNQITGIPANAFTADLAALNYLDVSENQVTSI 363
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS---FTGISDGSLRKL 320
GL +L SL L I GLT L + LS FT + G + L
Sbjct: 364 PANAFAGLHSLSSLFLQGNQITSILTSTFQGLTALTHLILSDNPFTTLPPGLFKGL 419
>gi|219821294|gb|ACL37774.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 343
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|219821282|gb|ACL37766.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISS 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251
Query: 436 ----AGLRHL-------------KPLKNLRSLT 451
AGL L P+ NL++LT
Sbjct: 252 ISSLAGLTALTNLELNENQLEDISPISNLKNLT 284
>gi|219821267|gb|ACL37756.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|322952096|gb|ADX21047.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112961610|gb|ABI28426.1| internalin A [Listeria monocytogenes]
gi|112961613|gb|ABI28428.1| internalin A [Listeria monocytogenes]
gi|112961625|gb|ABI28436.1| internalin A [Listeria monocytogenes]
gi|112961628|gb|ABI28438.1| internalin A [Listeria monocytogenes]
gi|112961631|gb|ABI28440.1| internalin A [Listeria monocytogenes]
gi|112961634|gb|ABI28442.1| internalin A [Listeria monocytogenes]
gi|112961670|gb|ABI28466.1| internalin A [Listeria monocytogenes]
gi|112961673|gb|ABI28468.1| internalin A [Listeria monocytogenes]
gi|112961676|gb|ABI28470.1| internalin A [Listeria monocytogenes]
gi|112961688|gb|ABI28478.1| internalin A [Listeria monocytogenes]
gi|112961703|gb|ABI28488.1| internalin A [Listeria monocytogenes]
gi|112961712|gb|ABI28494.1| internalin A [Listeria monocytogenes]
gi|112961715|gb|ABI28496.1| internalin A [Listeria monocytogenes]
gi|112961724|gb|ABI28502.1| internalin A [Listeria monocytogenes]
gi|112961733|gb|ABI28508.1| internalin A [Listeria monocytogenes]
gi|112961736|gb|ABI28510.1| internalin A [Listeria monocytogenes]
gi|112961739|gb|ABI28512.1| internalin A [Listeria monocytogenes]
gi|112961742|gb|ABI28514.1| internalin A [Listeria monocytogenes]
gi|112961745|gb|ABI28516.1| internalin A [Listeria monocytogenes]
gi|112961754|gb|ABI28522.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 263
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 264 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 313
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 314 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 352
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 79
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 80 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 133
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 134 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 188
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 189 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|112959440|gb|ABI27247.1| truncated internalin A [Listeria monocytogenes]
gi|112959442|gb|ABI27248.1| truncated internalin A [Listeria monocytogenes]
gi|112959448|gb|ABI27251.1| truncated internalin A [Listeria monocytogenes]
gi|112959454|gb|ABI27254.1| truncated internalin A [Listeria monocytogenes]
gi|112959458|gb|ABI27256.1| truncated internalin A [Listeria monocytogenes]
gi|112959460|gb|ABI27257.1| truncated internalin A [Listeria monocytogenes]
gi|112959462|gb|ABI27258.1| truncated internalin A [Listeria monocytogenes]
gi|112959472|gb|ABI27263.1| truncated internalin A [Listeria monocytogenes]
gi|112959480|gb|ABI27267.1| truncated internalin A [Listeria monocytogenes]
gi|112959482|gb|ABI27268.1| truncated internalin A [Listeria monocytogenes]
gi|112959488|gb|ABI27271.1| truncated internalin A [Listeria monocytogenes]
gi|112959514|gb|ABI27284.1| truncated internalin A [Listeria monocytogenes]
gi|112959538|gb|ABI27296.1| truncated internalin A [Listeria monocytogenes]
gi|112959542|gb|ABI27298.1| truncated internalin A [Listeria monocytogenes]
gi|112959548|gb|ABI27301.1| truncated internalin A [Listeria monocytogenes]
Length = 542
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 249
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 250 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 299
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 300 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 338
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|22347552|gb|AAM95921.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 256
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 257 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 306
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 307 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 345
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 37 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 89
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|294358387|gb|ADE73846.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 173/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 125/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GL +L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLISLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 91/207 (43%), Gaps = 51/207 (24%)
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
LG +TD V L + +L D GI + + + L NL IN S ++D +
Sbjct: 61 LGKTNVTDT--VSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTD--IT 114
Query: 319 KLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
L L+ L + ++ QI D T LA LT+LTGLT LF +ITD L+N NL L
Sbjct: 115 PLKDLTKLVDILMNNNQIADITPLANLTNLTGLT---LFNNQITDIDP--LKNLTNLNRL 169
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
E+ ++D IS L+GL+SL + S G
Sbjct: 170 ELSSNTISD------------------------------ISALSGLISL-----QQLSFG 194
Query: 438 --LRHLKPLKNLRSLTLESCKVTANDI 462
+ LKPL NL TLE +++N +
Sbjct: 195 NQVTDLKPLANLT--TLERLDISSNKV 219
>gi|344270426|ref|XP_003407045.1| PREDICTED: F-box/LRR-repeat protein 13 [Loxodonta africana]
Length = 680
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 125/443 (28%), Positives = 208/443 (46%), Gaps = 71/443 (16%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
L +L++ C LQ+L + P + D+ M I+ +L ++LS + +T+ + L
Sbjct: 178 LKPKTLKSVSHCRNLQELNVSDCPTLTDESMRHISEGCPGVLYLNLSNTGITNRTMRLLP 237
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GL 130
++ NLQ+L +C + +D GL++L +G LT L I+ QG + A G+
Sbjct: 238 RNFHNLQNLSLAYCRKFTDKGLQYLNLGKGCHKLTYLDLSGCTQISVQGFRNIANSCSGI 297
Query: 131 INL------------VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
++L VK +E+C+RI V G I+D K LS
Sbjct: 298 MHLTINDMPTLTDKCVKALVEKCSRITS--VVFIGAPH-----------ISDCAFKALST 344
Query: 179 LTNLKSLQISCSK-VTDSGIAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
NL+ ++ +K +TDS ++ ++ + +++ +G +T L SLS L L L
Sbjct: 345 -CNLRKIRFEGNKRITDSCFKFIDKHYPNIRHIYMVDCKG--LTDGSLKSLSVLKQLTVL 401
Query: 234 NLNRCQ-LSDDGCEK-FSKIGSLKVLNLGFN---EITDECLVHL-KGLTNLESLNLDSC- 286
NL C + D G ++ S K+ L N + D +V L + NL LNL +C
Sbjct: 402 NLANCVGIGDVGLKQLLDGPVSTKIRELNLNNCIHLGDASIVRLSERCPNLNYLNLRNCE 461
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT 345
+ D G+ ++ + +L S++LS T IS+ L L+ LK L+L + +ITD G+ A
Sbjct: 462 HLTDLGIEHIVNIFSLVSVDLSGTVISNEGLMTLSRHKKLKELSLSECYKITDMGIQAFC 521
Query: 346 --SLTGLTHLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVK---------H 391
SL L HLD+ + +++D L + +L SL I G +TD+ ++ H
Sbjct: 522 KGSLI-LEHLDVSYCPQLSDEIIKALAIYCISLTSLSIAGCPKITDSAMELLSAKCHYLH 580
Query: 392 IKDLSSLTLL------NLSQNCN 408
I D+S LL NL + CN
Sbjct: 581 ILDISGCILLTDQILENLQRGCN 603
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 110/402 (27%), Positives = 172/402 (42%), Gaps = 89/402 (22%)
Query: 117 NAITAQGMKAFA-----------GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
NAI MK+ A +N+++L+ C L ++ L+ LN+ C
Sbjct: 141 NAIDFSTMKSMAIDKYITSTLQRWRLNVLRLNFRGCLLKPKTLKSVSHCRNLQELNVSDC 200
Query: 166 NCITDSDMKPLS--------------GLTN------------LKSLQIS-CSKVTDSGIA 198
+TD M+ +S G+TN L++L ++ C K TD G+
Sbjct: 201 PTLTDESMRHISEGCPGVLYLNLSNTGITNRTMRLLPRNFHNLQNLSLAYCRKFTDKGLQ 260
Query: 199 YL---KGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGC-----EKF 248
YL KG KLT L+L GC ++ +++ + + +L +N D C EK
Sbjct: 261 YLNLGKGCHKLTYLDLSGCTQISVQGFRNIANSCSGIMHLTINDMPTLTDKCVKALVEKC 320
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-------DSC-GIGDEGLVNLTGLT 300
S+I S V+ +G I+D C NL + DSC D+ N+ +
Sbjct: 321 SRITS--VVFIGAPHISD-CAFKALSTCNLRKIRFEGNKRITDSCFKFIDKHYPNIRHIY 377
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR 359
++ G++DGSL+ L+ L L LNL + I D GL L L G
Sbjct: 378 MVDC-----KGLTDGSLKSLSVLKQLTVLNLANCVGIGDVGLKQL----------LDGPV 422
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNC-NLTDKTLELI 417
T L N +L DA + + + +L LNL +NC +LTD +E I
Sbjct: 423 STKIRELNLNNCIHL----------GDASIVRLSERCPNLNYLNL-RNCEHLTDLGIEHI 471
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT 458
+ LVS+++S + I++ GL L K L+ L+L C K+T
Sbjct: 472 VNIFSLVSVDLSGTVISNEGLMTLSRHKKLKELSLSECYKIT 513
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 31/163 (19%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+SVDLSG+ +++ GL+ L L+ L + C +I+D G++
Sbjct: 476 SLVSVDLSGTVISNEGLMTLSRHKKLKELSLSECYKITDMGIQ----------------- 518
Query: 118 AITAQGMKAF-AGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMK 174
AF G + L LD+ C ++ ++ + + L SL+I C ITDS M+
Sbjct: 519 --------AFCKGSLILEHLDVSYCPQLSDEIIKALAIYCISLTSLSIAGCPKITDSAME 570
Query: 175 PLSGLTN-LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC 214
LS + L L IS C +TD + L +G +L +L + C
Sbjct: 571 LLSAKCHYLHILDISGCILLTDQILENLQRGCNQLRILKMRYC 613
>gi|322952083|gb|ADX21041.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|290892407|ref|ZP_06555401.1| InlA protein [Listeria monocytogenes FSL J2-071]
gi|290557973|gb|EFD91493.1| InlA protein [Listeria monocytogenes FSL J2-071]
Length = 796
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 101 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 154
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 155 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 206
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 207 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 259
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 260 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 315
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 316 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 365
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 366 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 404
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 57 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 101
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 102 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 131
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 132 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 185
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 186 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 240
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 241 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 293
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 294 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 323
>gi|422808574|ref|ZP_16856985.1| Internalin A [Listeria monocytogenes FSL J1-208]
gi|378752188|gb|EHY62773.1| Internalin A [Listeria monocytogenes FSL J1-208]
Length = 802
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|298359764|gb|ADI77461.1| truncated internalin A [Listeria monocytogenes]
gi|298359862|gb|ADI77510.1| truncated internalin A [Listeria monocytogenes]
gi|298360070|gb|ADI77614.1| truncated internalin A [Listeria monocytogenes]
gi|298360108|gb|ADI77633.1| truncated internalin A [Listeria monocytogenes]
gi|298360174|gb|ADI77666.1| truncated internalin A [Listeria monocytogenes]
gi|298360196|gb|ADI77677.1| truncated internalin A [Listeria monocytogenes]
gi|298360268|gb|ADI77713.1| truncated internalin A [Listeria monocytogenes]
gi|298360290|gb|ADI77724.1| truncated internalin A [Listeria monocytogenes]
gi|298360536|gb|ADI77847.1| truncated internalin A [Listeria monocytogenes]
gi|298360608|gb|ADI77883.1| truncated internalin A [Listeria monocytogenes]
gi|298360658|gb|ADI77908.1| truncated internalin A [Listeria monocytogenes]
gi|298360684|gb|ADI77921.1| truncated internalin A [Listeria monocytogenes]
Length = 605
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTGLKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTGLKLGANQIS-----NISPLAGLTALT 320
>gi|255523032|ref|ZP_05390004.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|255513147|gb|EET89415.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
Length = 676
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 154/325 (47%), Gaps = 69/325 (21%)
Query: 124 MKAFAG---LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+K F+G L NL +L+L R + I+ + LK L+KL+S+++ + SD+ L LT
Sbjct: 170 IKDFSGIENLTNLKQLNL-RESEIND-ISELKNLVKLQSIDLSYNKI---SDISALKNLT 224
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK L + +KV D I+ L L L LNL P A N ++
Sbjct: 225 NLKKLNLGNNKVRD--ISVLSKLTNLQELNLGYIPYHDFETPDPEA---------NYNEI 273
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVN-LTG 298
SD + +L+ LNLG+ +I D L LKGL NL++L+L I D +VN L
Sbjct: 274 SD--ISALKNLTNLQTLNLGYTKIKD--LNALKGLNNLKTLDLSGNQISDISSIVNVLKE 329
Query: 299 LTNLESINLSFTGISD--------------------GSLRKLAGLSSLKSLNLDARQITD 338
LT+L +NLS IS+ ++ +L GLS+L++L+L + QI+D
Sbjct: 330 LTSLNDLNLSTNEISNIDELNKLTSLKMLKLNSNKISNINRLKGLSNLQTLDLSSNQISD 389
Query: 339 TG---------------------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
T + L LT L L+L+ +I+D A L+ NL+ +
Sbjct: 390 TANTLKELNNLNDLNLSNNQISNIGELNKLTNLKALNLYYNKISDISA--LKGLSNLQMI 447
Query: 378 EICGGGLTDAGV-KHIKDLSSLTLL 401
++ ++D V +++ +L L LL
Sbjct: 448 DLSYNEISDISVFENLANLRELILL 472
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 133/264 (50%), Gaps = 43/264 (16%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
+ISD + L+ L+NL +L+ + + A GL NL LDL + + I +
Sbjct: 272 EISD--ISALKNLTNLQTLNL---GYTKIKDLNALKGLNNLKTLDLSGNQISDISSIVNV 326
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
LK L L LN+ N I++ D L+ LT+LK L+++ +K+ S I LKGL L L+
Sbjct: 327 LKELTSLNDLNLS-TNEISNID--ELNKLTSLKMLKLNSNKI--SNINRLKGLSNLQTLD 381
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L ++ ++L L +L LNL+ Q+S+ G + +K+ +LK LNL +N+I+D
Sbjct: 382 LSSNQISDTA-NTLKELNNLNDLNLSNNQISNIG--ELNKLTNLKALNLYYNKISD---- 434
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+ L GL+NL+ I+LS+ ISD S+ L++L+ L
Sbjct: 435 ----------------------ISALKGLSNLQMIDLSYNEISDISV--FENLANLRELI 470
Query: 331 LDARQITDTGLAALTSLTGLTHLD 354
L + I+D + AL + H++
Sbjct: 471 LLSNPISDVDIQALKNALPQCHIN 494
>gi|85679236|gb|ABC72034.1| InlA [Listeria monocytogenes]
Length = 794
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 311
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 312 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 361
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 362 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 400
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 127
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 128 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 181
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 182 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 236
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 237 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|330806226|ref|XP_003291073.1| hypothetical protein DICPUDRAFT_98891 [Dictyostelium purpureum]
gi|325078753|gb|EGC32387.1| hypothetical protein DICPUDRAFT_98891 [Dictyostelium purpureum]
Length = 793
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 147/335 (43%), Gaps = 68/335 (20%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ--DLCLGQYPGVNDKWMDVIAS-QGSS 58
LP ++ Q+I + L+ +L FR+C L +LC + P ++D W+++ S+
Sbjct: 294 LPDELCQKIIPLFQRRKILSSRTLSLFRNCKLTRLELCGKEVP-ISDDWLNITKGLMAST 352
Query: 59 LLSVDLS-GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+ V++S S +TD G+ L NLQSLD ++ +I GL L
Sbjct: 353 ITYVNISKNSLLTDQGIASLSHLRNLQSLDISYVDKIDGSGLAAL--------------- 397
Query: 118 AITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AG + L KL +E C ++ L L L SL CN +TD D +
Sbjct: 398 --------VDAG-VPLQKLQMEGCLSLKLPQLFTTLSKLKTLSSLYAGACN-MTDDDCQQ 447
Query: 176 LSGLTNLKSLQISCSKV-TDSGIAYLKGLQKLTLLNLEGCPVTAA----CLDSLSALGSL 230
LS L L L + + V T+ G+ ++ L +LT L++ G A CL L L SL
Sbjct: 448 LSQLQTLTHLDVCRNAVITNRGLQFICNLSRLTELDIGGINQLDAQGIKCLLQLPHLESL 507
Query: 231 FYLNLNRCQLSDDGC-----------------EKFSKIGSLKVLNLGF---------NEI 264
N C + DD C FS +G+ + NL + I
Sbjct: 508 AAEN---CGI-DDKCMNYIGSLKSLKSLSLINNPFSDVGAKHIGNLIYLTTLDLSMCANI 563
Query: 265 TDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTG 298
TD LVH + L+ + LNL+ CG + D G+ +LTG
Sbjct: 564 TDATLVHFRNLSQISKLNLNFCGNLTDSGVTSLTG 598
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 152/351 (43%), Gaps = 69/351 (19%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNL-KGLMK--LESLNIKWCNCI 168
F+R ++++ + F L +L+L + I +N+ KGLM + +NI + +
Sbjct: 306 FQRRKILSSRTLSLFRN-CKLTRLELCGKEVPISDDWLNITKGLMASTITYVNISKNSLL 364
Query: 169 TDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK----GLQKLTLLNLEGCPVTAACLDS 223
TD + LS L NL+SL IS K+ SG+A L LQKL +EGC
Sbjct: 365 TDQGIASLSHLRNLQSLDISYVDKIDGSGLAALVDAGVPLQKL---QMEGC--------- 412
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L+L QL F+ + LK L+ SL
Sbjct: 413 ---------LSLKLPQL-------FTTLSKLKTLS---------------------SLYA 435
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGL 341
+C + D+ L+ L L +++ I++ L+ + LS L L++ Q+ G+
Sbjct: 436 GACNMTDDDCQQLSQLQTLTHLDVCRNAVITNRGLQFICNLSRLTELDIGGINQLDAQGI 495
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
L L L L I D Y+ + K+L+SL + +D G KHI +L LT L
Sbjct: 496 KCLLQLPHLESLAAENCGIDDKCMNYIGSLKSLKSLSLINNPFSDVGAKHIGNLIYLTTL 555
Query: 402 NLSQNCNLTDKTLELISGLTGLVSL------NVSNSRITS--AGLRHLKPL 444
+LS N+TD TL L+ + L N+++S +TS GL LK L
Sbjct: 556 DLSMCANITDATLVHFRNLSQISKLNLNFCGNLTDSGVTSLTGGLSQLKTL 606
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 37 CLGQYP----------GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL 86
CL Q P G++DK M+ I S S ++ +D G H+ + L +L
Sbjct: 497 CLLQLPHLESLAAENCGIDDKCMNYIGSLKSLKSLSLINNP-FSDVGAKHIGNLIYLTTL 555
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI 144
D + C I+D L H R LS ++ L+ +T G+ + GL L L + C R+
Sbjct: 556 DLSMCANITDATLVHFRNLSQISKLNLNFCGNLTDSGVTSLTGGLSQLKTLGIIGCNRL 614
>gi|313485056|gb|ADR53002.1| InlA [Listeria monocytogenes]
Length = 789
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|85679230|gb|ABC72031.1| InlA [Listeria monocytogenes]
Length = 794
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 311
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 312 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 361
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 362 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 400
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 127
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 128 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 181
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 182 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 236
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 237 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|223698613|gb|ACN18982.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 173/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 125/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GL +L+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLISLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 76/170 (44%), Gaps = 47/170 (27%)
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFG 357
L NL IN S ++D + L L+ L + ++ QI D T LA LT+LTGLT LF
Sbjct: 12 LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIADITPLANLTNLTGLT---LFN 66
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+ITD L+N NL LE+ ++D I
Sbjct: 67 NQITDIDP--LKNLTNLNRLELSSNTISD------------------------------I 94
Query: 418 SGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDIKRL 465
S L+GL+SL + S G + LKPL NL TLE +++N + +
Sbjct: 95 SALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKVSDI 137
>gi|222630606|gb|EEE62738.1| hypothetical protein OsJ_17541 [Oryza sativa Japonica Group]
Length = 973
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 148/329 (44%), Gaps = 34/329 (10%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+V S + L L+ LD + C +ISD G++H+ + +L L + +T G+ A
Sbjct: 649 NVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHIASIESLEKLHVSQ-TGLTDNGVMAI 707
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+ LINL LDL L +L+ L +LE L+I W + IT+ L T+L L I
Sbjct: 708 SSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNI 766
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S ++VT L L L LN+ C + + C L ++L + +S
Sbjct: 767 SWTRVT-----CLPILPTLRCLNMSNCTIHSICNGEFQVL-----IHLEKLIIS---AAS 813
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
F I + F+ I L + L++ SC L L + NLE ++L
Sbjct: 814 FGNIDEV------FSSILPSSLTY---------LDMSSC--SSSNLYFLGNMRNLEHLDL 856
Query: 308 SFTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGA 365
S++ I ++ +A + +LK L+L ++T L L ++ LT L L +I DS
Sbjct: 857 SYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSAL 916
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
Y+ +LR L + + D +K+ K+
Sbjct: 917 LYISMMPSLRILNLSRTCIKDERIKYSKE 945
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Query: 254 LKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTG 311
L+VL L + + L G+ L+ L+L C I D G+ ++ + +LE +++S TG
Sbjct: 639 LRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHIASIESLEKLHVSQTG 698
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
++D + ++ L +L+ L+L + TD L +L LT L HLD++G+ IT+ GA+ L F
Sbjct: 699 LTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIWGSEITNEGASVLIAF 758
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
+L L I +T + L +L LN+S NC +
Sbjct: 759 TSLSFLNISWTRVTCLPI-----LPTLRCLNMS-NCTI 790
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 32/200 (16%)
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGSL 317
G + E L +L L L L C + + L+G+ L+ ++LS + ISD +
Sbjct: 621 GHIAVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGI 680
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
+ +A + SL+ L++ +TD G+ A++SL L LDL G R TD L+ L L
Sbjct: 681 KHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHL 740
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
+I G +T+ G + +SL+ LN+S +R+T
Sbjct: 741 DIWGSEITNEGASVLIAFTSLSFLNISW-------------------------TRVTC-- 773
Query: 438 LRHLKPLKNLRSLTLESCKV 457
L L LR L + +C +
Sbjct: 774 ---LPILPTLRCLNMSNCTI 790
>gi|194239378|emb|CAQ76829.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 171/347 (49%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L +I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNKISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 365 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ LK LTNL L L S I D + L+GLTNL+ LSF G L+ LA L++L
Sbjct: 157 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|386333502|ref|YP_006029672.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334195951|gb|AEG69136.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 535
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 143/296 (48%), Gaps = 5/296 (1%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L S + V G+ L + LT L+L + A L A L LN+NR ++
Sbjct: 218 TLNASRNGVGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTMLNVNRNRIDVP 277
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
G + +L L++G N I D + L T L +LN++ G+G G+ L L
Sbjct: 278 GARALAACKTLTSLDIGGNSIGDAGVEALLAHTQLTTLNVERAGVGAHGVRALADCKTLT 337
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
S+ + I D + LA +SL +L+ ++ I G AL + T LT L+L + D+
Sbjct: 338 SLRIDNNNIGDEGAKTLAASTSLTALHSESNGIGLAGAKALAANTMLTTLNLGHNSVGDA 397
Query: 364 GA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
GA A+L N K L SL + GL+DAG + +LT L++ N + D +
Sbjct: 398 GAQAWLANTK-LVSLSVRRNGLSDAGAIRLAASKTLTTLDVGDNA-IKDTGARAFAANRT 455
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR-LQSRDLPNL-VSF 476
L +LN+S++ I +AG R L L SL L + ++ ++ L +R L +L VSF
Sbjct: 456 LTTLNLSSNEIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSF 511
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 155/349 (44%), Gaps = 3/349 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ ++LSG+ + L + L LD + C I L + LT+L+ RN
Sbjct: 168 LVRLNLSGNRIGTVEARLLANHPTLTELDVSRC-GIGPEEARALAASARLTTLNASRN-G 225
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ +G++A L LDL L +L LN+ N I + L+
Sbjct: 226 VGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTMLNVNR-NRIDVPGARALAA 284
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L SL I + + D+G+ L +LT LN+E V A + +L+ +L L ++
Sbjct: 285 CKTLTSLDIGGNSIGDAGVEALLAHTQLTTLNVERAGVGAHGVRALADCKTLTSLRIDNN 344
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D+G + + SL L+ N I L T L +LNL +GD G
Sbjct: 345 NIGDEGAKTLAASTSLTALHSESNGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQAWLA 404
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
T L S+++ G+SD +LA +L +L++ I DTG A + LT L+L
Sbjct: 405 NTKLVSLSVRRNGLSDAGAIRLAASKTLTTLDVGDNAIKDTGARAFAANRTLTTLNLSSN 464
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
I ++GA L L SL++ + +AGV+ + +L+ L +S NC
Sbjct: 465 EIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSFNC 513
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 115/257 (44%), Gaps = 5/257 (1%)
Query: 53 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
AS+ ++L+V+ + DV G L C L SLD I D G+E L + LT+L+
Sbjct: 260 ASERLTMLNVNRNRIDV--PGARALAACKTLTSLDIGGN-SIGDAGVEALLAHTQLTTLN 316
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
R + A G++A A L L ++ G L L +L+ + N I +
Sbjct: 317 VERA-GVGAHGVRALADCKTLTSLRIDNNNIGDEGAKTLAASTSLTALHSE-SNGIGLAG 374
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
K L+ T L +L + + V D+G KL L++ ++ A L+A +L
Sbjct: 375 AKALAANTMLTTLNLGHNSVGDAGAQAWLANTKLVSLSVRRNGLSDAGAIRLAASKTLTT 434
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L++ + D G F+ +L LNL NEI + L T L SL+L + + + G
Sbjct: 435 LDVGDNAIKDTGARAFAANRTLTTLNLSSNEIGNAGARALAANTRLASLDLRNNRMLEAG 494
Query: 293 LVNLTGLTNLESINLSF 309
+ L L S+ +SF
Sbjct: 495 VRALLVNRTLSSLGVSF 511
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 110/269 (40%), Gaps = 36/269 (13%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ----LSDDGCEKFSKIGSLKVLN 258
L+KLTL P T A L L +L L+L+R + ++ G S++ L LN
Sbjct: 120 LEKLTLAG----PFTDADLAGLPP--TLKELDLSRDRGRGFITAAGIAHLSRL-PLVRLN 172
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
L N I L L L++ CGIG E L L ++N S G+ +R
Sbjct: 173 LSGNRIGTVEARLLANHPTLTELDVSRCGIGPEEARALAASARLTTLNASRNGVGGEGVR 232
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
L +L SL+L + D L + LT L++ RI GA L K L SL+
Sbjct: 233 ALVDCKTLTSLDLSENGLGDAEAQRLGASERLTMLNVNRNRIDVPGARALAACKTLTSLD 292
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
I G + DAGV E + T L +LNV + + + G+
Sbjct: 293 IGGNSIGDAGV-------------------------EALLAHTQLTTLNVERAGVGAHGV 327
Query: 439 RHLKPLKNLRSLTLESCKVTANDIKRLQS 467
R L K L SL +++ + K L +
Sbjct: 328 RALADCKTLTSLRIDNNNIGDEGAKTLAA 356
>gi|320169490|gb|EFW46389.1| hypothetical protein CAOG_04357 [Capsaspora owczarzaki ATCC 30864]
Length = 620
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 126/283 (44%), Gaps = 6/283 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
QI+ GL+ LT L + +N IT+ AF+ L +L +L +E + T I G
Sbjct: 68 QIASIPAYAFSGLTALTWL-YLDSNQITSISASAFSDLTSLEQLRMEENQITSISDGA-- 124
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL + L + N IT +GLT L L++S +++T + + L L
Sbjct: 125 FTGLTAVLELGLNR-NQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTLLDLL 183
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L +T+ + + L +L L L ++ F + +L VL+L N IT
Sbjct: 184 LYKNRITSIPTSAFTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSNHITSILPS 243
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
GLT LE+L LD I + TGLT ++++ L I+ S GL++L +
Sbjct: 244 SFTGLTALEALLLDKNQISNIPASAFTGLTAMQTLYLDSNRITSISTNAFTGLTALTYMY 303
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
LD+ QIT A T LT LT+L L G T + N
Sbjct: 304 LDSNQITRIPANAFTGLTALTYLTLDGNPFTTLPPGLFKGLPN 346
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 126/284 (44%), Gaps = 5/284 (1%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLN 161
G+ T + NN I + AF+GL L + LD + T I L LE L
Sbjct: 54 GIPVTTRALYLSNNQIASIPAYAFSGLTALTWLYLDSNQITSISASA--FSDLTSLEQLR 111
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++ N IT +GLT + L ++ +++T GL L L L +T+
Sbjct: 112 MEE-NQITSISDGAFTGLTAVLELGLNRNQITSISANAFTGLTGLHFLELSNNQLTSIPS 170
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+++ +L L L + +++ F+ + +LK L L N IT +GL+ L L
Sbjct: 171 SVFASVTTLLDLLLYKNRITSIPTSAFTTLTALKTLRLYDNPITSISANAFEGLSALTVL 230
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
+L S I + TGLT LE++ L IS+ GL+++++L LD+ +IT
Sbjct: 231 HLSSNHITSILPSSFTGLTALEALLLDKNQISNIPASAFTGLTAMQTLYLDSNRITSIST 290
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
A T LT LT++ L +IT A L L + G T
Sbjct: 291 NAFTGLTALTYMYLDSNQITRIPANAFTGLTALTYLTLDGNPFT 334
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 1/227 (0%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L+ Q++ FS + +L L L N+IT LT+LE L ++ I
Sbjct: 62 LYLSNNQIASIPAYAFSGLTALTWLYLDSNQITSISASAFSDLTSLEQLRMEENQITSIS 121
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
TGLT + + L+ I+ S GL+ L L L Q+T + S+T L
Sbjct: 122 DGAFTGLTAVLELGLNRNQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTLLD 181
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L L+ RIT + L++L + +T + LS+LT+L+LS N ++T
Sbjct: 182 LLLYKNRITSIPTSAFTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSN-HITSI 240
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
+GLT L +L + ++I++ L +++L L+S ++T+
Sbjct: 241 LPSSFTGLTALEALLLDKNQISNIPASAFTGLTAMQTLYLDSNRITS 287
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 104/236 (44%), Gaps = 1/236 (0%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+ S L +L +L L+ Q++ FS + SL+ L + N+IT GLT + L
Sbjct: 76 AFSGLTALTWLYLDSNQITSISASAFSDLTSLEQLRMEENQITSISDGAFTGLTAVLELG 135
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L+ I TGLT L + LS ++ A +++L L L +IT +
Sbjct: 136 LNRNQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTLLDLLLYKNRITSIPTS 195
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
A T+LT L L L+ IT A L L + +T L++L L
Sbjct: 196 AFTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSNHITSILPSSFTGLTALEALL 255
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L +N +++ +GLT + +L + ++RITS L L + L+S ++T
Sbjct: 256 LDKN-QISNIPASAFTGLTAMQTLYLDSNRITSISTNAFTGLTALTYMYLDSNQIT 310
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 113/278 (40%), Gaps = 25/278 (8%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
SGLT L L + +++T + L L L +E +T+ + + L ++ L L
Sbjct: 77 FSGLTALTWLYLDSNQITSISASAFSDLTSLEQLRMEENQITSISDGAFTGLTAVLELGL 136
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
NR Q++ F+ + L L L N++T +T L L L I
Sbjct: 137 NRNQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTLLDLLLYKNRITSIPTSA 196
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
T LT L+++ L I+ S GLS+L L+L + IT ++ T LT L L L
Sbjct: 197 FTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSNHITSILPSSFTGLTALEALLL 256
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+I++ A+ +++L L S + ++S N
Sbjct: 257 DKNQISNIPASAFTGLTAMQTLY----------------LDSNRITSISTNA-------- 292
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
+GLT L + + +++IT L L LTL+
Sbjct: 293 -FTGLTALTYMYLDSNQITRIPANAFTGLTALTYLTLD 329
>gi|291239173|ref|XP_002739507.1| PREDICTED: F-box and leucine-rich repeat protein 20-like
[Saccoglossus kowalevskii]
Length = 794
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 126/490 (25%), Positives = 207/490 (42%), Gaps = 107/490 (21%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQDL + + GVND M IA S LL +++S +++ D+ L L + C+NLQ L +C
Sbjct: 319 LQDLNISECSGVNDDMMKDIAEGCSILLYLNISHTNIADASLRVLSRCCANLQYLSLAYC 378
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
+ SD GL++L RG L L IT +G + + E C+ I
Sbjct: 379 KRFSDKGLQYLSHSRGCRKLIYLDLSGCTQITQEGYRNMS----------EGCSNIQSIF 428
Query: 149 VNLKGLMKLESLNIKWCNC-------------ITDSDMKPLSGLTNLKSLQISCS-KVTD 194
+N +K E L+ C ++DS +K L+ L+ +++ + +++D
Sbjct: 429 LNDNNTLKDECLSAVTSKCHNIRSMSLLGTPHLSDSAIKTLALNRRLQKIRMEGNNRISD 488
Query: 195 SGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKI 251
GI +L K L + L CP +T L SLS ++ LN+ C ++SD G +
Sbjct: 489 LGIKHLAKYCHDLRHVYLSDCPRLTDTALKSLSNCRNVSVLNIADCVRISDSGVRQ---- 544
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFT 310
+V + LNL +C + D ++ + + NLS+
Sbjct: 545 -----------------MVEGPSGPKIRELNLTNCVRVSDVSILRIMQKCH----NLSYA 583
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
ITD G+ L S+ L +D+ G +TDSG A L N
Sbjct: 584 SFCF------------------CEHITDAGVELLGSMPSLMSVDISGCNVTDSGLASLGN 625
Query: 371 FKNLRSLEICG-GGLTDAGVKH-----------------------IKDLS----SLTLLN 402
L + I +TD G++ IK+L+ L +LN
Sbjct: 626 NPRLLDVTIAECYQITDLGIQKFAQQCRDLERLDVSHCSSLTDSAIKNLAFCCRRLVVLN 685
Query: 403 LSQNCNLTDKTLELISGLTG-LVSLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCK-VT 458
L+ LTD +++ +SG+ L SL++S ++ LR+L K K ++ L + C+ VT
Sbjct: 686 LTGCQLLTDLSIQYLSGVCHYLHSLDISGCVHVSDKSLRYLRKGCKRIKVLVMLYCRNVT 745
Query: 459 ANDIKRLQSR 468
+LQ +
Sbjct: 746 KTAYLKLQGK 755
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 150/301 (49%), Gaps = 25/301 (8%)
Query: 181 NLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNR 237
NL+ L IS CS V D + + +G L LN+ + A L LS +L YL+L
Sbjct: 318 NLQDLNISECSGVNDDMMKDIAEGCSILLYLNISHTNIADASLRVLSRCCANLQYLSLAY 377
Query: 238 CQ-LSDDGCEKFSK-IGSLKVLNL---GFNEITDECLVHL-KGLTNLESLNL-DSCGIGD 290
C+ SD G + S G K++ L G +IT E ++ +G +N++S+ L D+ + D
Sbjct: 378 CKRFSDKGLQYLSHSRGCRKLIYLDLSGCTQITQEGYRNMSEGCSNIQSIFLNDNNTLKD 437
Query: 291 EGLVNLTG-LTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSL 347
E L +T N+ S++L T +SD +++ LA L+ + ++ +I+D G+ L
Sbjct: 438 ECLSAVTSKCHNIRSMSLLGTPHLSDSAIKTLALNRRLQKIRMEGNNRISDLGIKHLAKY 497
Query: 348 TG-LTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSS---LTLL 401
L H+ L R+TD+ L N +N+ L I ++D+GV+ + + S + L
Sbjct: 498 CHDLRHVYLSDCPRLTDTALKSLSNCRNVSVLNIADCVRISDSGVRQMVEGPSGPKIREL 557
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSN----SRITSAGLRHLKPLKNLRSLTLESCKV 457
NL+ ++D + ++ + +L+ ++ IT AG+ L + +L S+ + C V
Sbjct: 558 NLTNCVRVSD--VSILRIMQKCHNLSYASFCFCEHITDAGVELLGSMPSLMSVDISGCNV 615
Query: 458 T 458
T
Sbjct: 616 T 616
>gi|332030619|gb|EGI70307.1| F-box/LRR-repeat protein 14 [Acromyrmex echinatior]
Length = 837
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 155/323 (47%), Gaps = 71/323 (21%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH----------------------------LRGLSNL 108
LK NL++L+ + C I+D G+ + + L NL
Sbjct: 498 LKGVPNLEALNLSGCYNITDSGITNAFCQEYPSLIELNLSLCKQVTDTSLSRIAQFLKNL 557
Query: 109 TSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLE 158
L IT G+ A GL L +LDL C + G+ +L GL + LE
Sbjct: 558 EHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDLGIAHLAGLNRETADGNLALE 617
Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+++ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 618 HLSLQDCQRLSDEALRHVSLGLTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSC-- 675
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KG 274
D++S +G + YL E S+I SL V F ++I D+ LVH+ +G
Sbjct: 676 -----DNISDIG-MAYL-----------AEGGSRITSLDV---SFCDKIGDQALVHISQG 715
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLD 332
L NL+SL+L +C I DEG+ + LE++N+ + ++D L +A + +LK ++L
Sbjct: 716 LFNLKSLSLSACQISDEGICKIA----LETLNIGQCSRLTDRGLHTVAESMKNLKCIDLY 771
Query: 333 A-RQITDTGLAALTSLTGLTHLD 354
+IT +GL + L L+ D
Sbjct: 772 GCTKITTSGLERIMKLPQLSDDD 794
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 163/319 (51%), Gaps = 48/319 (15%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS-CSKVTDSGIAYL- 200
LKG+ LE+LN+ C ITD SG+TN L L +S C +VTD+ ++ +
Sbjct: 498 LKGVPNLEALNLSGCYNITD------SGITNAFCQEYPSLIELNLSLCKQVTDTSLSRIA 551
Query: 201 KGLQKLTLLNLEG-CPVTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVL 257
+ L+ L L L G C +T L ++ L L L+L C +SD G I L L
Sbjct: 552 QFLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDLG------IAHLAGL 605
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISD 314
N E D G LE L+L C + DE L +++ GLT L+SINLSF I+D
Sbjct: 606 N---RETAD-------GNLALEHLSLQDCQRLSDEALRHVSLGLTTLKSINLSFCVCITD 655
Query: 315 GSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYL-RN 370
++ LA +SSL+ LNL + I+D G+A L + +T LD+ F +I D ++ +
Sbjct: 656 SGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQG 715
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVS 429
NL+SL + ++D G+ I +L LN+ Q LTD+ L ++ + L +++
Sbjct: 716 LFNLKSLSLSACQISDEGICKI----ALETLNIGQCSRLTDRGLHTVAESMKNLKCIDLY 771
Query: 430 N-SRITSAGLRHLKPLKNL 447
++IT++GL + L L
Sbjct: 772 GCTKITTSGLERIMKLPQL 790
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 139/270 (51%), Gaps = 32/270 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA +L ++L G ++T++GL+ + L+ LD C +SD G+ H
Sbjct: 542 VTDTSLSRIAQFLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDLGIAH 601
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLES 159
L GL N TA G A L L L+ C R+ L ++ GL L+S
Sbjct: 602 LAGL-----------NRETADGNLA------LEHLSLQDCQRLSDEALRHVSLGLTTLKS 644
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVT 217
+N+ +C CITDS +K L+ +++L+ L + SC ++D G+AYL +G ++T L++ C
Sbjct: 645 INLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKI 704
Query: 218 A--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHL-K 273
A + L +L L+L+ CQ+SD+G K +L+ LN+G + +TD L + +
Sbjct: 705 GDQALVHISQGLFNLKSLSLSACQISDEGICKI----ALETLNIGQCSRLTDRGLHTVAE 760
Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLTNL 302
+ NL+ ++L C I GL + L L
Sbjct: 761 SMKNLKCIDLYGCTKITTSGLERIMKLPQL 790
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 132/277 (47%), Gaps = 54/277 (19%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
LKG+ L LNL GC N+ +++ C+++ SL LNL
Sbjct: 498 LKGVPNLEALNLSGC------------------YNITDSGITNAFCQEYP---SLIELNL 536
Query: 260 GF-NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINL-SFTGISD 314
++TD L + + L NLE L L C I + GL+ + GL L+ ++L S +SD
Sbjct: 537 SLCKQVTDTSLSRIAQFLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSD 596
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLR-NFK 372
+ LAGL+ R+ D LA L HL L R++D ++
Sbjct: 597 LGIAHLAGLN---------RETADGNLA-------LEHLSLQDCQRLSDEALRHVSLGLT 640
Query: 373 NLRSLE----ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLN 427
L+S+ +C +TD+GVKH+ +SSL LNL N++D + L G + + SL+
Sbjct: 641 TLKSINLSFCVC---ITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLD 697
Query: 428 VSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
VS +I L H+ + L NL+SL+L +C+++ I
Sbjct: 698 VSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGI 734
>gi|71754651|ref|XP_828240.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833626|gb|EAN79128.1| hypothetical protein Tb11.53.0001 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 1399
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 128/491 (26%), Positives = 202/491 (41%), Gaps = 107/491 (21%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI---- 119
LS + + D + H+ +C +L +L+ FC I+D + LSN+T L R N
Sbjct: 804 LSNTRINDENIRHISECKSLNTLNLAFCNDITD-----ITALSNITML--RELNIDWCFN 856
Query: 120 TAQGMKAFAGLINLVKLDLERC------TRIHGGLVNLKGLMKLESLNIKWCNCI----- 168
+G++A L L +LD ++C + + K L+KL N + C+
Sbjct: 857 IEKGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSS 916
Query: 169 -------------TDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLE 212
+ P+S L L+ L + +V D GI+ K LQ L N+
Sbjct: 917 TAIVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSL---NVS 973
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
C + +LS+L +L LN+N C G E F + L+V L +T+E + L
Sbjct: 974 NCNYITD-ISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRLL 1032
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN----LSFTGISDGSLRKLAGLSSLKS 328
G NL +L L CG + N+ + N++S+ + I++G L K+ L L+
Sbjct: 1033 SGCKNLRNLELYCCG----DVSNIEPINNIKSLEELTIQNCHNINEG-LLKVGMLPRLRV 1087
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGG--LT 385
L L Q T L++L L L + G + D + N L+ L+I G L
Sbjct: 1088 LVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCD--IKLISNIATLKELKIAHGDRLLN 1145
Query: 386 DAG---------------------------------------------VKHIKDLSSLTL 400
D G + HI +L++L
Sbjct: 1146 DVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDITHSFELPDIYHISNLTALEE 1205
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI-TSAGLRHLKPLKNLRSLTLESCKVT- 458
LNLS C E ++ L L LN+S++R+ TS G ++ K+L +L LESC +T
Sbjct: 1206 LNLS-GCYHIISGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKSLITLNLESCDMTD 1264
Query: 459 ---ANDIKRLQ 466
DIK L+
Sbjct: 1265 ASCLADIKTLE 1275
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 129/515 (25%), Positives = 198/515 (38%), Gaps = 142/515 (27%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + +TD + H C L +LD +FC ++ D + LSN+T+L
Sbjct: 590 LSNTHITDRDISHFSKCKELVTLDLSFCDELFD-----ITSLSNITTLE----------- 633
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------ 165
L+L+ C++I GL L L +L LN+K
Sbjct: 634 -----------DLNLDNCSKIRKGLSVLGELPRLRVLNVKGVHLTNSVIGSLGNGKSFVK 682
Query: 166 ----NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV----- 216
NC SD+ LS L+ LK L + SGI L L +L +L+L +
Sbjct: 683 LILDNCKGLSDVTFLSSLSTLKELNLHHCDAVTSGIGTLGRLLQLRVLDLGWTKIDNNSL 742
Query: 217 --TAAC-----------------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
AC + ++++L +L LN++ C G F + L+V
Sbjct: 743 EDICACSSPLVSLNLSHCKEITSISAIASLNALEKLNIDNCCHVTSGWNVFGTLHQLRVA 802
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSF-----TG 311
L I DE + H+ +L +LNL C I D + L+ +T L +N+ + G
Sbjct: 803 VLSNTRINDENIRHISECKSLNTLNLAFCNDITD--ITALSNITMLRELNIDWCFNIEKG 860
Query: 312 ISD-GSLRKLAGL---------------------SSLKSLNLD----------------- 332
+ G L KL L SL LNL+
Sbjct: 861 VEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSSTAIV 920
Query: 333 -----ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
R L ++SL L L+L R+ D + K+L+SL + +
Sbjct: 921 EELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSLNV-------S 973
Query: 388 GVKHIKDLSSL----TLLNLSQN-CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+I D+S+L TL L+ N C+ K E LT L +S + +T+ G+R L
Sbjct: 974 NCNYITDISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRLLS 1033
Query: 443 PLKNLRSLTLESCKVTA-----NDIKRLQSRDLPN 472
KNLR+L L C + N+IK L+ + N
Sbjct: 1034 GCKNLRNLELYCCGDVSNIEPINNIKSLEELTIQN 1068
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 174/413 (42%), Gaps = 65/413 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL+ L+FN+ I D +E + + L+ LS N++T + + L L +L+L
Sbjct: 228 TNLKCLEFNY-TSIDDSCIEEICECATLSKLSVSECNSLT--DVTPISQLAALEELNLSN 284
Query: 141 CTRIHGG------------------------LVNLKGLMKLESLNIKWCNCITDSDMKPL 176
C I G L +L LE LN+ +CI +D+ PL
Sbjct: 285 CYHITKGIGALVRLLRLRALDLSGVSVEDNFLKDLCDCGPLERLNLS--HCIQLTDINPL 342
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S T ++ L ++ C ++T GI+ + L KL +L+++ ++ + LDS+ SL L++
Sbjct: 343 SNATAIQELNLNRCHRITQ-GISVVWELPKLRVLHMKDMHLSESSLDSVGTSESLVKLSI 401
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
C GF ++T L LE LN+ C G+
Sbjct: 402 ENCA--------------------GFGDMT-----LLSSFVALEELNIQKCADIISGVGC 436
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA---ALTSLTGLTH 352
L L L +N+ IS + SL L +++ TGL+ AL ++ L
Sbjct: 437 LGTLPYLRVLNIKEAHISSIGFTGIGASKSLLQLTIES----TTGLSDVEALANILTLEK 492
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L L G D+G L N L+ L++ G ++ + ++ LNLS +T
Sbjct: 493 LSLLGCNGIDAGIGCLGNLPQLKVLDLSGTNTDSDSLRGLCVSQTIVSLNLSHCWKVT-- 550
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
++ IS L L LN+S+ +AG L+ L+ L L + +T DI
Sbjct: 551 SVFHISALETLNELNLSDCIRINAGWEALEKLQQLHVAILSNTHITDRDISHF 603
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 184/409 (44%), Gaps = 50/409 (12%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++ D LE + +L SL+ N IT + A + L L +L++ C RI G +
Sbjct: 952 RVCDIWLEGISQSKSLQSLNVSNCNYIT--DISALSSLSTLEELNVNCCDRIRKGWEAFE 1009
Query: 153 GLMKLE--SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L +L +L++ W +T+ ++ LSG NL++L++ C S I + ++ L L
Sbjct: 1010 ALTRLRVATLSVTW---VTNEGIRLLSGCKNLRNLELYCCGDV-SNIEPINNIKSLEELT 1065
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQ-----------------LSDDGCEK------ 247
++ C L + L L L L + Q L+ +G E+
Sbjct: 1066 IQNCHNINEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKL 1125
Query: 248 FSKIGSLKVLNLG-----FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNL 302
S I +LK L + N++ D L L L L L +G+ ++ + +L
Sbjct: 1126 ISNIATLKELKIAHGDRLLNDVGD-----LGKLPWLHVLTLSHFNMGNTCFESVCKIRSL 1180
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
+S++++ + + ++ L++L+ LNL +G ALT+L L L+L R+T
Sbjct: 1181 KSLDITHS-FELPDIYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTT 1239
Query: 363 S-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
S G Y+ K+L +L + +TDA + D+ +L L++ + C + + L
Sbjct: 1240 SYGGYYISRCKSLITLNLESCDMTDASC--LADIKTLEELHIGK-CEELTRGFSALFTLP 1296
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI---KRLQS 467
L LN+ +S IT LR ++ + L L CK NDI +R++S
Sbjct: 1297 QLRILNLMDSLITDEDLREIQLSHTIEDLNLSYCK-ELNDITPVRRIKS 1344
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 118/452 (26%), Positives = 184/452 (40%), Gaps = 80/452 (17%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+ L+ C I G+ L L L L+ + + I++ G +L++L +E T
Sbjct: 419 LEELNIQKCADII-SGVGCLGTLPYLRVLNIKEAH-ISSIGFTGIGASKSLLQLTIESTT 476
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+ + L ++ LE L++ CN I D+ + L L LK L +S + + L
Sbjct: 477 GL-SDVEALANILTLEKLSLLGCNGI-DAGIGCLGNLPQLKVLDLSGTNTDSDSLRGLCV 534
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
Q + LNL C + +SAL +L LNL+ C + G E K+ L V L
Sbjct: 535 SQTIVSLNLSHCWKVTSVFH-ISALETLNELNLSDCIRINAGWEALEKLQQLHVAILSNT 593
Query: 263 EITDECLVH-----------------------LKGLTNLESLNLDSCGIGDEGLVNLTGL 299
ITD + H L +T LE LNLD+C +GL L L
Sbjct: 594 HITDRDISHFSKCKELVTLDLSFCDELFDITSLSNITTLEDLNLDNCSKIRKGLSVLGEL 653
Query: 300 TNLESINL-----------------SFT--------GISDGSLRKLAGLSSLKSLNLDAR 334
L +N+ SF G+SD + L+ LS+LK LNL
Sbjct: 654 PRLRVLNVKGVHLTNSVIGSLGNGKSFVKLILDNCKGLSDVTF--LSSLSTLKELNLHHC 711
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+G+ L L L LDL +I ++ +L + C L + H K+
Sbjct: 712 DAVTSGIGTLGRLLQLRVLDLGWTKIDNN---------SLEDICACSSPLVSLNLSHCKE 762
Query: 395 LSSLTL---------LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
++S++ LN+ C++T + L L +SN+RI +RH+ K
Sbjct: 763 ITSISAIASLNALEKLNIDNCCHVTSG-WNVFGTLHQLRVAVLSNTRINDENIRHISECK 821
Query: 446 NLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
+L +L L C NDI + + L N+ R
Sbjct: 822 SLNTLNLAFC----NDITDITA--LSNITMLR 847
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 118/454 (25%), Positives = 198/454 (43%), Gaps = 38/454 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D W++ I SQ SL S+++S + +TD + L S L+ L+ N C +I G E
Sbjct: 953 VCDIWLEGI-SQSKSLQSLNVSNCNYITD--ISALSSLSTLEELNVNCCDRIRKG-WEAF 1008
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L+ L + +T +G++ +G NL L+L C + + + + LE L I
Sbjct: 1009 EALTRLRVATLSVT-WVTNEGIRLLSGCKNLRNLELYCCGDV-SNIEPINNIKSLEELTI 1066
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG----CPVTA 218
+ C+ I + +K + L L+ L + + T ++ L + L L +EG C +
Sbjct: 1067 QNCHNINEGLLK-VGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKL 1125
Query: 219 AC----------------LDSLSALGSLFYLN---LNRCQLSDDGCEKFSKIGSLKVLNL 259
L+ + LG L +L+ L+ + + E KI SLK L++
Sbjct: 1126 ISNIATLKELKIAHGDRLLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDI 1185
Query: 260 GFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG-SL 317
+ E+ D + H+ LT LE LNL C G LT L L +NLS T ++
Sbjct: 1186 THSFELPD--IYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTSYGG 1243
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
++ SL +LNL++ +TD + L + L L + G + L LR L
Sbjct: 1244 YYISRCKSLITLNLESCDMTDA--SCLADIKTLEELHIGKCEELTRGFSALFTLPQLRIL 1301
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSA 436
+ +TD ++ I+ ++ LNLS L D T + I + + S R
Sbjct: 1302 NLMDSLITDEDLREIQLSHTIEDLNLSYCKELNDITPVRRIKSIKKMDLHRSSEGRGLRE 1361
Query: 437 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 470
G R L L L + +++ V+ + K L+ R +
Sbjct: 1362 GFRSLLELPCLSWVDIKNANVSFDVYKELKERKV 1395
>gi|112961667|gb|ABI28464.1| truncated internalin A [Listeria monocytogenes]
Length = 556
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTGLKLGANQISNISP 263
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 264 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 313
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 314 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 352
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 79
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 80 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 133
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 134 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 188
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 189 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTGLKLGANQIS-----NISPLAGLTALT 271
>gi|443428800|gb|AGC92199.1| truncated internalin A [Listeria monocytogenes]
gi|443428802|gb|AGC92200.1| truncated internalin A [Listeria monocytogenes]
gi|443428806|gb|AGC92202.1| truncated internalin A [Listeria monocytogenes]
gi|443428824|gb|AGC92211.1| truncated internalin A [Listeria monocytogenes]
gi|443428830|gb|AGC92214.1| truncated internalin A [Listeria monocytogenes]
gi|443428832|gb|AGC92215.1| truncated internalin A [Listeria monocytogenes]
gi|443428834|gb|AGC92216.1| truncated internalin A [Listeria monocytogenes]
Length = 797
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|313485046|gb|ADR52998.1| InlA [Listeria monocytogenes]
Length = 774
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|255525367|ref|ZP_05392306.1| putative cell wall binding repeat 2-containing protein [Clostridium
carboxidivorans P7]
gi|296187977|ref|ZP_06856369.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
gi|255510938|gb|EET87239.1| putative cell wall binding repeat 2-containing protein [Clostridium
carboxidivorans P7]
gi|296047103|gb|EFG86545.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
Length = 660
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 153/314 (48%), Gaps = 59/314 (18%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+KD S L++L + ++D + L L NLT NL KL
Sbjct: 373 IKDISGLENLTNLQILALTDTEVSDLSPLKNLT----------------------NLQKL 410
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+L RC ++ + LK L L++LN+ WC + SD+ PL LTNL+ L + +++D+
Sbjct: 411 NL-RCAQV-SDISPLKYLTNLQNLNL-WCAQV--SDISPLKDLTNLQKLDLHIPQISDT- 464
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK--------- 247
+ LK L L L+L+ V+ ++ L L +L LNL+R Q+SD K
Sbjct: 465 -SALKNLTNLQQLSLQYTQVSH--INGLENLTNLQQLNLDRTQVSDISGLKDLTNLQKLN 521
Query: 248 -----FSKIGSLKV------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
S I LK L+L N+++D + LK LTNL+ L+L++ + D + L
Sbjct: 522 LNNNQVSNISPLKYLTNLQELDLSSNQVSD--ISPLKYLTNLQKLDLNNNQVSD--VSPL 577
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
LTNL+ + L+ ISD + L L +L+ L L QI+D ++ L L L L+L
Sbjct: 578 KYLTNLQDLLLNVNQISD--ISPLKDLINLQGLYLGINQISD--ISPLKYLINLRELNLK 633
Query: 357 GARITDSGAAYLRN 370
+++D+ L+N
Sbjct: 634 HTQVSDADKQSLKN 647
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 167/335 (49%), Gaps = 43/335 (12%)
Query: 125 KAFAGLIN-----LVKLDLERCTRI-------HGGLVNLKGLMKLESLNIKWCNCITDSD 172
KA IN L+K D+ + T + H + ++ GL L +L I SD
Sbjct: 338 KAIRATINKPTGELLKSDVNQITELDVSIINEHTDIKDISGLENLTNLQILALTDTEVSD 397
Query: 173 MKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ PL LTNL+ L + C++V+D S + YL LQ L L C + + L L +L
Sbjct: 398 LSPLKNLTNLQKLNLRCAQVSDISPLKYLTNLQNLNLW----C-AQVSDISPLKDLTNLQ 452
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG---LTNLESLNLDSCGI 288
L+L+ Q+SD K + +L+ L+L + +++ H+ G LTNL+ LNLD +
Sbjct: 453 KLDLHIPQISDTSALK--NLTNLQQLSLQYTQVS-----HINGLENLTNLQQLNLDRTQV 505
Query: 289 GD-EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
D GL +LT L L N + IS L L++L+ L+L + Q++D ++ L L
Sbjct: 506 SDISGLKDLTNLQKLNLNNNQVSNIS-----PLKYLTNLQELDLSSNQVSD--ISPLKYL 558
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
T L LDL +++D + L+ NL+ L + ++D + +KDL +L L L N
Sbjct: 559 TNLQKLDLNNNQVSD--VSPLKYLTNLQDLLLNVNQISD--ISPLKDLINLQGLYLGIN- 613
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
++D + + L L LN+ +++++ A + LK
Sbjct: 614 QISD--ISPLKYLINLRELNLKHTQVSDADKQSLK 646
>gi|320167410|gb|EFW44309.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 702
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 124/295 (42%), Gaps = 1/295 (0%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N IT + LT L L + +++T GL LTLL+L P+T+ +
Sbjct: 67 YTNNITSIPANAFASLTRLTILTLDVNQITSIPATAFTGLSALTLLSLGSNPITSMSASA 126
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L L L+L+ ++ F+ + +L + L +IT L +L+ L L
Sbjct: 127 FTDLTKLTQLSLDNTPITSISANAFAGLSALTQMFLYQTQITSISASAFADLRSLQKLYL 186
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
I TGLT L ++LS+ I+ S A LSSL L L Q++
Sbjct: 187 YGNRITSISANAFTGLTKLAYLDLSYNQITSISANAFADLSSLTDLRLYFNQMSSLAANT 246
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
T L+ LT L L +IT A L+ L + +T L SLT+L +
Sbjct: 247 FTGLSALTQLSLLNNQITAISANAFTGLNALKLLYLHNNLITTIAANSFAGLPSLTVLQV 306
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
N +T + +GL+ L ++ ++ITS L L+ L L++ T
Sbjct: 307 YNNT-ITSISANAFTGLSALTMFLLNYNQITSIPASAFTELTTLQVLALDNNPFT 360
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 115/271 (42%), Gaps = 1/271 (0%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N IT +GL+ L L + + +T + L KLT L+L+ P+T+ ++
Sbjct: 92 VNQITSIPATAFTGLSALTLLSLGSNPITSMSASAFTDLTKLTQLSLDNTPITSISANAF 151
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+ L +L + L + Q++ F+ + SL+ L L N IT GLT L L+L
Sbjct: 152 AGLSALTQMFLYQTQITSISASAFADLRSLQKLYLYGNRITSISANAFTGLTKLAYLDLS 211
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
I L++L + L F +S + GLS+L L+L QIT A
Sbjct: 212 YNQITSISANAFADLSSLTDLRLYFNQMSSLAANTFTGLSALTQLSLLNNQITAISANAF 271
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
T L L L L IT A +L L++ +T LS+LT+ L+
Sbjct: 272 TGLNALKLLYLHNNLITTIAANSFAGLPSLTVLQVYNNTITSISANAFTGLSALTMFLLN 331
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
N +T + LT L L + N+ T+
Sbjct: 332 YN-QITSIPASAFTELTTLQVLALDNNPFTT 361
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 14 LVYSRCLTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQG-SSLLSVDLSGSDVTD 71
+Y +T +S AF D +LQ L L G + A G + L +DLS + +T
Sbjct: 161 FLYQTQITSISASAFADLRSLQKLYLY---GNRITSISANAFTGLTKLAYLDLSYNQITS 217
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
D S+L L F Q+S GLS LT LS NN ITA AF GL
Sbjct: 218 ISANAFADLSSLTDLRLYFN-QMSSLAANTFTGLSALTQLSLL-NNQITAISANAFTGL- 274
Query: 132 NLVKLDLERCTRIHGGLV------NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
N +KL +H L+ + GL L L + + N IT +GL+ L
Sbjct: 275 NALKL-----LYLHNNLITTIAANSFAGLPSLTVLQV-YNNTITSISANAFTGLSALTMF 328
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
++ +++T + L L +L L+ P T
Sbjct: 329 LLNYNQITSIPASAFTELTTLQVLALDNNPFT 360
>gi|320164980|gb|EFW41879.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 769
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 113/277 (40%), Gaps = 26/277 (9%)
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
TSLS +N IT+ AF L LV + L+ N I
Sbjct: 45 TSLSLY-DNQITSLPASAFTSLTALVAVYLQD-------------------------NQI 78
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
T +G+T LK L ++ +++T GL L L L G +T L++ L
Sbjct: 79 TAVPASAFAGMTTLKQLHLANNQLTSISTGTFAGLTSLVSLYLAGNQITTIPLNAFVDLT 138
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L LN Q++D F+ + +K L L N+IT GLT L L L S I
Sbjct: 139 QLVGLELNNNQITDIPASSFTGLSGMKRLTLNNNQITILSANAFTGLTALTELYLSSNTI 198
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
TGL+ L + L F I+ + GLSSL L L + +IT A T LT
Sbjct: 199 TSISANAFTGLSALTMVELQFNQITSIASNSFTGLSSLIFLGLSSNRITSISDNAFTGLT 258
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L L LF +IT A+ L L L + G T
Sbjct: 259 QLVSLTLFSNQITSISASALTGMPVLLQLTLTGNPFT 295
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 113/251 (45%), Gaps = 4/251 (1%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
G L+L + + + A+ SL+AL +++ L Q++ F+ + +LK L+L
Sbjct: 43 GTTSLSLYDNQITSLPASAFTSLTALVAVY---LQDNQITAVPASAFAGMTTLKQLHLAN 99
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
N++T GLT+L SL L I L LT L + L+ I+D
Sbjct: 100 NQLTSISTGTFAGLTSLVSLYLAGNQITTIPLNAFVDLTQLVGLELNNNQITDIPASSFT 159
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
GLS +K L L+ QIT A T LT LT L L IT A L +E+
Sbjct: 160 GLSGMKRLTLNNNQITILSANAFTGLTALTELYLSSNTITSISANAFTGLSALTMVELQF 219
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
+T LSSL L LS N +T + +GLT LVSL + +++ITS L
Sbjct: 220 NQITSIASNSFTGLSSLIFLGLSSN-RITSISDNAFTGLTQLVSLTLFSNQITSISASAL 278
Query: 442 KPLKNLRSLTL 452
+ L LTL
Sbjct: 279 TGMPVLLQLTL 289
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 1/227 (0%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L Q++ F+ + +L + L N+IT G+T L+ L+L + +
Sbjct: 47 LSLYDNQITSLPASAFTSLTALVAVYLQDNQITAVPASAFAGMTTLKQLHLANNQLTSIS 106
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
GLT+L S+ L+ I+ L L+ L L L+ QITD ++ T L+G+
Sbjct: 107 TGTFAGLTSLVSLYLAGNQITTIPLNAFVDLTQLVGLELNNNQITDIPASSFTGLSGMKR 166
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L L +IT A L L + +T LS+LT++ L N +T
Sbjct: 167 LTLNNNQITILSANAFTGLTALTELYLSSNTITSISANAFTGLSALTMVELQFN-QITSI 225
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
+GL+ L+ L +S++RITS L L SLTL S ++T+
Sbjct: 226 ASNSFTGLSSLIFLGLSSNRITSISDNAFTGLTQLVSLTLFSNQITS 272
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 98/241 (40%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT + LT L ++ + +++T + G+ L L+L +T+ + +
Sbjct: 52 NQITSLPASAFTSLTALVAVYLQDNQITAVPASAFAGMTTLKQLHLANNQLTSISTGTFA 111
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L SL L L Q++ F + L L L N+ITD GL+ ++ L L++
Sbjct: 112 GLTSLVSLYLAGNQITTIPLNAFVDLTQLVGLELNNNQITDIPASSFTGLSGMKRLTLNN 171
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
I TGLT L + LS I+ S GLS+L + L QIT + T
Sbjct: 172 NQITILSANAFTGLTALTELYLSSNTITSISANAFTGLSALTMVELQFNQITSIASNSFT 231
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L+ L L L RIT L SL + +T + + L L L+
Sbjct: 232 GLSSLIFLGLSSNRITSISDNAFTGLTQLVSLTLFSNQITSISASALTGMPVLLQLTLTG 291
Query: 406 N 406
N
Sbjct: 292 N 292
>gi|298360648|gb|ADI77903.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|294358389|gb|ADE73847.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|313485058|gb|ADR53003.1| InlA [Listeria monocytogenes]
Length = 765
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|298360200|gb|ADI77679.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|298359932|gb|ADI77545.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|312372215|gb|EFR20228.1| hypothetical protein AND_20473 [Anopheles darlingi]
Length = 1701
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 108/420 (25%), Positives = 177/420 (42%), Gaps = 35/420 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLI--HLKDCSNLQ--SLDFNFCIQISDGGLEHLRGLSNLTSLS 112
SL ++ LSG+ +TD+G+I +KD LQ LD N ++ +G L L L
Sbjct: 313 PSLKTMQLSGNKITDAGMIGRAIKDLHTLQILKLDRNMISKLGEGSFVDLPSLKEL---- 368
Query: 113 FRRNNAITAQGMKAF--AGLINLVKLDLERCTRIH--------GGLVNLKGLMKLESLNI 162
+ +N IT AF + LV L+ R+H G V + L + E +
Sbjct: 369 YLNDNGITEIFHGAFHRTPSLKLVHLENNYLRRVHPESFLQASGSGVEMMHLQQNEIGRV 428
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ + D+ L L+ L +S +K+ L+G L L L + D
Sbjct: 429 EELRSLLDA-------LPMLRFLDLSYNKLEAIPFGALRGHGTLEQLYLNQNRIRMIERD 481
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+ A+ L L L LSD F + LK +++ +N L G+ +L L+
Sbjct: 482 AFMAMPGLRELRLQNNSLSDQLPMPFWNLPGLKGIDISYNNFRRMDPSLLVGVPSLRRLD 541
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSF---TGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+ + LE++N+SF T I G+ R L + L + + ++
Sbjct: 542 ISGNALSAIEPSAFGNTPMLETVNISFNELTHIHPGTFRDLHHMFELDAGDNRLQEFI-P 600
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
GL L + A S + L + NLR L++ G LT K L
Sbjct: 601 GLPLAVERINLQR-NKISALPQPSTGSKLWDLPNLRMLDVSGNELTRLPRAVFKPAPQLR 659
Query: 400 LLNLSQN--CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
+L+L++N ++ D +L SGLT L LN+ ++R+ + R PL+NLR L L+ ++
Sbjct: 660 VLSLARNQLQSIDDGSL---SGLTRLEVLNLQDNRVLALHERCFNPLENLRELNLQGNRI 716
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 101/402 (25%), Positives = 166/402 (41%), Gaps = 65/402 (16%)
Query: 117 NAITAQGMKAFAG--LINLVKLDLERCTRIHGGLVN------------------LKGL-M 155
NA++A AF ++ V + T IH G + GL +
Sbjct: 545 NALSAIEPSAFGNTPMLETVNISFNELTHIHPGTFRDLHHMFELDAGDNRLQEFIPGLPL 604
Query: 156 KLESLNI---KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+E +N+ K S L L NL+ L +S +++T A K +L +L+L
Sbjct: 605 AVERINLQRNKISALPQPSTGSKLWDLPNLRMLDVSGNELTRLPRAVFKPAPQLRVLSLA 664
Query: 213 GCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEI---TDE 267
+ + SLS L L LNL NR + C F+ + +L+ LNL N I D
Sbjct: 665 RNQLQSIDDGSLSGLTRLEVLNLQDNRVLALHERC--FNPLENLRELNLQGNRIEVLVDN 722
Query: 268 CL------------------VHLKGLTN---LESLNLDSCGIGDEGLVNLTGLTNLESIN 306
L + K N L++L+L S + E +L+GL L S++
Sbjct: 723 LLDGNALLEQFDASRNSIVEISAKAFRNSRSLQTLDLSSNQL-HELPESLSGLAELRSLD 781
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
LSF +++ S L +L+ L ++ +L +L L + DL +T
Sbjct: 782 LSFNQLTELSPNLLVSWRNLEELKASNNKVNQLHQGSLRNLPLLQYFDLSSNELTQLEHG 841
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
LRN L+ L + +T+ + +DL +L ++L QN NL + +V L
Sbjct: 842 SLRNLPELQELVLADNRITELKERVFEDLPNLQAVHLQQN-NLRYISPYSFYRSPSIVYL 900
Query: 427 NVSNSRITS---AGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
N+S ++ S GLR ++ LE +TAN I+++
Sbjct: 901 NLSANQFRSLDNVGLRSIR--------NLEVLDLTANGIRKI 934
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 139/330 (42%), Gaps = 37/330 (11%)
Query: 114 RRNNAITAQG-----MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--- 165
R+ A+T Q + F+GL L ++++ + I +GL+ LE++++
Sbjct: 218 RKLEAVTIQSEHLKRLPDFSGLSKLRYINVQSGSLIELAPPYFRGLISLETVHVTGSASL 277
Query: 166 ---------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLKG 202
N I+ ++ GL +LK++Q+S +K+TD+G+ +K
Sbjct: 278 TRLEAGLLNDLPKLTLIDLSENGISWVHLRTFVGLPSLKTMQLSGNKITDAGMIGRAIKD 337
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L L +L L+ ++ S L SL L LN +++ F + SLK+++L N
Sbjct: 338 LHTLQILKLDRNMISKLGEGSFVDLPSLKELYLNDNGITEIFHGAFHRTPSLKLVHLENN 397
Query: 263 ---EITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLTNLESINLSFTGISDGSL 317
+ E + G + +E ++L IG +E L L L ++LS+ +
Sbjct: 398 YLRRVHPESFLQASG-SGVEMMHLQQNEIGRVEELRSLLDALPMLRFLDLSYNKLEAIPF 456
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
L G +L+ L L+ +I A ++ GL L L ++D N L+ +
Sbjct: 457 GALRGHGTLEQLYLNQNRIRMIERDAFMAMPGLRELRLQNNSLSDQLPMPFWNLPGLKGI 516
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
+I + + SL L++S N
Sbjct: 517 DISYNNFRRMDPSLLVGVPSLRRLDISGNA 546
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 9/192 (4%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+DSLS L L + + L FS + L+ +N+ + + + +GL +LE
Sbjct: 210 PVDSLSGLRKLEAVTIQSEHLKR--LPDFSGLSKLRYINVQSGSLIELAPPYFRGLISLE 267
Query: 280 SLNLD---SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
++++ S + GL+N L L I+LS GIS LR GL SLK++ L +I
Sbjct: 268 TVHVTGSASLTRLEAGLLN--DLPKLTLIDLSENGISWVHLRTFVGLPSLKTMQLSGNKI 325
Query: 337 TDTGL--AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
TD G+ A+ L L L L I+ G + +L+ L + G+T+
Sbjct: 326 TDAGMIGRAIKDLHTLQILKLDRNMISKLGEGSFVDLPSLKELYLNDNGITEIFHGAFHR 385
Query: 395 LSSLTLLNLSQN 406
SL L++L N
Sbjct: 386 TPSLKLVHLENN 397
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L+GL L+++ + + + L + L+ L ++++ + + Y R +L ++ +
Sbjct: 214 LSGLRKLEAVTIQSEHLKR--LPDFSGLSKLRYINVQSGSLIELAPPYFRGLISLETVHV 271
Query: 380 CGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
G LT + DL LTL++LS+N ++ L GL L ++ +S ++IT AG+
Sbjct: 272 TGSASLTRLEAGLLNDLPKLTLIDLSEN-GISWVHLRTFVGLPSLKTMQLSGNKITDAGM 330
Query: 439 --RHLKPLKNLRSLTLE 453
R +K L L+ L L+
Sbjct: 331 IGRAIKDLHTLQILKLD 347
>gi|298360700|gb|ADI77929.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112959444|gb|ABI27249.1| truncated internalin A [Listeria monocytogenes]
gi|112959490|gb|ABI27272.1| truncated internalin A [Listeria monocytogenes]
Length = 542
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTGLKLGANQISNISP 249
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 250 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 299
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 300 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 338
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTGLKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|150371888|dbj|BAF65733.1| internalin A [Listeria monocytogenes]
gi|150371890|dbj|BAF65734.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|47092503|ref|ZP_00230292.1| internalin A [Listeria monocytogenes str. 4b H7858]
gi|417314487|ref|ZP_12101186.1| internalin A [Listeria monocytogenes J1816]
gi|47019095|gb|EAL09839.1| internalin A [Listeria monocytogenes str. 4b H7858]
gi|130774783|gb|ABO32406.1| InlA [Listeria monocytogenes]
gi|130774787|gb|ABO32408.1| InlA [Listeria monocytogenes]
gi|167861878|gb|ACA05638.1| InlA [Listeria monocytogenes]
gi|167861926|gb|ACA05662.1| InlA [Listeria monocytogenes]
gi|194239406|emb|CAQ76843.1| internalin A [Listeria monocytogenes]
gi|223006800|gb|ACM69357.1| internalin A [Listeria monocytogenes]
gi|223006808|gb|ACM69361.1| internalin A [Listeria monocytogenes]
gi|294358399|gb|ADE73852.1| InlA [Listeria monocytogenes]
gi|298359958|gb|ADI77558.1| internalin A [Listeria monocytogenes]
gi|298359988|gb|ADI77573.1| internalin A [Listeria monocytogenes]
gi|298360010|gb|ADI77584.1| internalin A [Listeria monocytogenes]
gi|298360208|gb|ADI77683.1| internalin A [Listeria monocytogenes]
gi|298360370|gb|ADI77764.1| internalin A [Listeria monocytogenes]
gi|298360402|gb|ADI77780.1| internalin A [Listeria monocytogenes]
gi|298360472|gb|ADI77815.1| internalin A [Listeria monocytogenes]
gi|298360544|gb|ADI77851.1| internalin A [Listeria monocytogenes]
gi|298360592|gb|ADI77875.1| internalin A [Listeria monocytogenes]
gi|328467733|gb|EGF38785.1| internalin A [Listeria monocytogenes J1816]
gi|443428820|gb|AGC92209.1| truncated internalin A [Listeria monocytogenes]
gi|443428844|gb|AGC92221.1| truncated internalin A [Listeria monocytogenes]
gi|443428846|gb|AGC92222.1| truncated internalin A [Listeria monocytogenes]
gi|443428850|gb|AGC92224.1| truncated internalin A [Listeria monocytogenes]
gi|443428854|gb|AGC92226.1| truncated internalin A [Listeria monocytogenes]
gi|443428856|gb|AGC92227.1| truncated internalin A [Listeria monocytogenes]
Length = 797
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|313485044|gb|ADR52997.1| InlA [Listeria monocytogenes]
Length = 771
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|298360724|gb|ADI77941.1| truncated internalin A [Listeria monocytogenes]
Length = 403
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 109/342 (31%), Positives = 171/342 (50%), Gaps = 47/342 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
L L + +++D + L N N+ L + G+T + H
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLRL---GITKLAILH 399
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|219821351|gb|ACL37812.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 343
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|290980344|ref|XP_002672892.1| predicted protein [Naegleria gruberi]
gi|284086472|gb|EFC40148.1| predicted protein [Naegleria gruberi]
Length = 283
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%)
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
S++ L LN+ N I E + G+ L SLN+ IGD+G ++ + L SIN+S
Sbjct: 129 SEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINIS 188
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
+ I + ++ + L SLN+ I DTG ++ + LT LD++ RI GA Y+
Sbjct: 189 YNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKYI 248
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
K L SL+I G + D VK I ++ LT L
Sbjct: 249 SEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 82/152 (53%), Gaps = 1/152 (0%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
+ L SLN++ IG EG ++G+ L S+N+S+ I D + ++ + L S+N+
Sbjct: 131 MKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINISYN 190
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+I G ++ + LT L++ I D+GA ++ K L SL+I + G K+I +
Sbjct: 191 RICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKYISE 250
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
+ LT L++ N + D+ ++LIS + L SL
Sbjct: 251 MKQLTSLDIGGN-QIGDEEVKLISEMKQLTSL 281
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+VNL TNL F + ++ + L SLN++ I G ++ + LT
Sbjct: 109 IVNLKFSTNL------FDYFEEAKF--ISEMKELTSLNINGNVIGAEGAKFISGMKQLTS 160
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L++ I D GA + K L S+ I + G K I ++ LT LN++ N + D
Sbjct: 161 LNISYNVIGDKGAKLISEMKQLISINISYNRICGEGAKFISEMKQLTSLNIANNS-IGDT 219
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
+ ISG+ L SL++ N+RI G +++ +K L SL + ++ ++K + ++
Sbjct: 220 GAKFISGMKELTSLDIYNNRIGREGAKYISEMKQLTSLDIGGNQIGDEEVKLIS--EMKQ 277
Query: 473 LVSFRP 478
L S R
Sbjct: 278 LTSLRK 283
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 77/155 (49%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
++ +++LT LN+ G + A +S + L LN++ + D G + S++ L +N
Sbjct: 127 FISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISIN 186
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
+ +N I E + + L SLN+ + IGD G ++G+ L S+++ I +
Sbjct: 187 ISYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAK 246
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
++ + L SL++ QI D + ++ + LT L
Sbjct: 247 YISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I K +SG+ L SL IS + + D G + +++L +N+
Sbjct: 131 MKELTSLNIN-GNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINISY 189
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L LN+ + D G + S + L L++ N I E ++
Sbjct: 190 NRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKYIS 249
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
+ L SL++ IGDE + ++ + L S+
Sbjct: 250 EMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
>gi|167862012|gb|ACA05705.1| InlA [Listeria monocytogenes]
Length = 797
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|242057027|ref|XP_002457659.1| hypothetical protein SORBIDRAFT_03g011312 [Sorghum bicolor]
gi|241929634|gb|EES02779.1| hypothetical protein SORBIDRAFT_03g011312 [Sorghum bicolor]
Length = 81
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 45/53 (84%)
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
L+K++GLSS+K LNLD RQIT+TGLA+L SLTGLTHLDLFGARI DSG R
Sbjct: 29 LKKISGLSSMKPLNLDNRQITNTGLASLASLTGLTHLDLFGARIIDSGMNCFR 81
>gi|71912408|gb|AAZ53236.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ LK LTNL L L S I D + L+GLTNL+ LSF G L+ LA L++L
Sbjct: 157 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|298359892|gb|ADI77525.1| internalin A [Listeria monocytogenes]
gi|298360422|gb|ADI77790.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112959536|gb|ABI27295.1| internalin A [Listeria monocytogenes]
gi|112959546|gb|ABI27300.1| internalin A [Listeria monocytogenes]
Length = 734
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 249
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 250 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 299
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 300 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 338
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|112961694|gb|ABI28482.1| internalin A [Listeria monocytogenes]
gi|112961706|gb|ABI28490.1| internalin A [Listeria monocytogenes]
gi|112961763|gb|ABI28528.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 263
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 264 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 313
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 314 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 352
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 79
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 80 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 133
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 134 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 188
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 189 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|313485077|gb|ADR53009.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|254854324|ref|ZP_05243672.1| internalin A [Listeria monocytogenes FSL R2-503]
gi|300766414|ref|ZP_07076370.1| internalin A precursor [Listeria monocytogenes FSL N1-017]
gi|404279991|ref|YP_006680889.1| internalin A [Listeria monocytogenes SLCC2755]
gi|404285805|ref|YP_006692391.1| internalin A [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405754532|ref|YP_006677996.1| internalin A [Listeria monocytogenes SLCC2540]
gi|130774761|gb|ABO32395.1| InlA [Listeria monocytogenes]
gi|130774765|gb|ABO32397.1| InlA [Listeria monocytogenes]
gi|130774775|gb|ABO32402.1| InlA [Listeria monocytogenes]
gi|150371872|dbj|BAF65725.1| internalin A [Listeria monocytogenes]
gi|150371878|dbj|BAF65728.1| internalin A [Listeria monocytogenes]
gi|150371880|dbj|BAF65729.1| internalin A [Listeria monocytogenes]
gi|150371882|dbj|BAF65730.1| internalin A [Listeria monocytogenes]
gi|150371884|dbj|BAF65731.1| internalin A [Listeria monocytogenes]
gi|150371886|dbj|BAF65732.1| internalin A [Listeria monocytogenes]
gi|167861936|gb|ACA05667.1| InlA [Listeria monocytogenes]
gi|167861950|gb|ACA05674.1| InlA [Listeria monocytogenes]
gi|167861974|gb|ACA05686.1| InlA [Listeria monocytogenes]
gi|167861990|gb|ACA05694.1| InlA [Listeria monocytogenes]
gi|194239386|emb|CAQ76833.1| internalin A [Listeria monocytogenes]
gi|194239390|emb|CAQ76835.1| internalin A [Listeria monocytogenes]
gi|194239398|emb|CAQ76839.1| internalin A [Listeria monocytogenes]
gi|194326159|emb|CAQ77238.1| internalin A [Listeria monocytogenes]
gi|223006782|gb|ACM69348.1| internalin A [Listeria monocytogenes]
gi|258607720|gb|EEW20328.1| internalin A [Listeria monocytogenes FSL R2-503]
gi|290350822|dbj|BAI78332.1| internalin A [Listeria monocytogenes]
gi|290350824|dbj|BAI78333.1| internalin A [Listeria monocytogenes]
gi|298359734|gb|ADI77446.1| internalin A [Listeria monocytogenes]
gi|298359740|gb|ADI77449.1| internalin A [Listeria monocytogenes]
gi|298359774|gb|ADI77466.1| internalin A [Listeria monocytogenes]
gi|298359822|gb|ADI77490.1| internalin A [Listeria monocytogenes]
gi|298359826|gb|ADI77492.1| internalin A [Listeria monocytogenes]
gi|298359830|gb|ADI77494.1| internalin A [Listeria monocytogenes]
gi|298359834|gb|ADI77496.1| internalin A [Listeria monocytogenes]
gi|298359836|gb|ADI77497.1| internalin A [Listeria monocytogenes]
gi|298359846|gb|ADI77502.1| internalin A [Listeria monocytogenes]
gi|298359848|gb|ADI77503.1| internalin A [Listeria monocytogenes]
gi|298359854|gb|ADI77506.1| internalin A [Listeria monocytogenes]
gi|298359856|gb|ADI77507.1| internalin A [Listeria monocytogenes]
gi|298359868|gb|ADI77513.1| internalin A [Listeria monocytogenes]
gi|298359870|gb|ADI77514.1| internalin A [Listeria monocytogenes]
gi|298359888|gb|ADI77523.1| internalin A [Listeria monocytogenes]
gi|298359920|gb|ADI77539.1| internalin A [Listeria monocytogenes]
gi|298359954|gb|ADI77556.1| internalin A [Listeria monocytogenes]
gi|298359968|gb|ADI77563.1| internalin A [Listeria monocytogenes]
gi|298359972|gb|ADI77565.1| internalin A [Listeria monocytogenes]
gi|298359984|gb|ADI77571.1| internalin A [Listeria monocytogenes]
gi|298359998|gb|ADI77578.1| internalin A [Listeria monocytogenes]
gi|298360002|gb|ADI77580.1| internalin A [Listeria monocytogenes]
gi|298360006|gb|ADI77582.1| internalin A [Listeria monocytogenes]
gi|298360040|gb|ADI77599.1| internalin A [Listeria monocytogenes]
gi|298360042|gb|ADI77600.1| internalin A [Listeria monocytogenes]
gi|298360044|gb|ADI77601.1| internalin A [Listeria monocytogenes]
gi|298360050|gb|ADI77604.1| internalin A [Listeria monocytogenes]
gi|298360080|gb|ADI77619.1| internalin A [Listeria monocytogenes]
gi|298360090|gb|ADI77624.1| internalin A [Listeria monocytogenes]
gi|298360100|gb|ADI77629.1| internalin A [Listeria monocytogenes]
gi|298360126|gb|ADI77642.1| internalin A [Listeria monocytogenes]
gi|298360150|gb|ADI77654.1| internalin A [Listeria monocytogenes]
gi|298360156|gb|ADI77657.1| internalin A [Listeria monocytogenes]
gi|298360166|gb|ADI77662.1| internalin A [Listeria monocytogenes]
gi|298360188|gb|ADI77673.1| internalin A [Listeria monocytogenes]
gi|298360190|gb|ADI77674.1| internalin A [Listeria monocytogenes]
gi|298360194|gb|ADI77676.1| internalin A [Listeria monocytogenes]
gi|298360220|gb|ADI77689.1| internalin A [Listeria monocytogenes]
gi|298360222|gb|ADI77690.1| internalin A [Listeria monocytogenes]
gi|298360238|gb|ADI77698.1| internalin A [Listeria monocytogenes]
gi|298360246|gb|ADI77702.1| internalin A [Listeria monocytogenes]
gi|298360260|gb|ADI77709.1| internalin A [Listeria monocytogenes]
gi|298360264|gb|ADI77711.1| internalin A [Listeria monocytogenes]
gi|298360266|gb|ADI77712.1| internalin A [Listeria monocytogenes]
gi|298360294|gb|ADI77726.1| internalin A [Listeria monocytogenes]
gi|298360298|gb|ADI77728.1| internalin A [Listeria monocytogenes]
gi|298360312|gb|ADI77735.1| internalin A [Listeria monocytogenes]
gi|298360318|gb|ADI77738.1| internalin A [Listeria monocytogenes]
gi|298360356|gb|ADI77757.1| internalin A [Listeria monocytogenes]
gi|298360368|gb|ADI77763.1| internalin A [Listeria monocytogenes]
gi|298360396|gb|ADI77777.1| internalin A [Listeria monocytogenes]
gi|298360398|gb|ADI77778.1| internalin A [Listeria monocytogenes]
gi|298360400|gb|ADI77779.1| internalin A [Listeria monocytogenes]
gi|298360428|gb|ADI77793.1| internalin A [Listeria monocytogenes]
gi|298360434|gb|ADI77796.1| internalin A [Listeria monocytogenes]
gi|298360448|gb|ADI77803.1| internalin A [Listeria monocytogenes]
gi|298360462|gb|ADI77810.1| internalin A [Listeria monocytogenes]
gi|298360498|gb|ADI77828.1| internalin A [Listeria monocytogenes]
gi|298360502|gb|ADI77830.1| internalin A [Listeria monocytogenes]
gi|298360510|gb|ADI77834.1| internalin A [Listeria monocytogenes]
gi|298360514|gb|ADI77836.1| internalin A [Listeria monocytogenes]
gi|298360558|gb|ADI77858.1| internalin A [Listeria monocytogenes]
gi|298360560|gb|ADI77859.1| internalin A [Listeria monocytogenes]
gi|298360566|gb|ADI77862.1| internalin A [Listeria monocytogenes]
gi|298360586|gb|ADI77872.1| internalin A [Listeria monocytogenes]
gi|298360614|gb|ADI77886.1| internalin A [Listeria monocytogenes]
gi|298360630|gb|ADI77894.1| internalin A [Listeria monocytogenes]
gi|298360638|gb|ADI77898.1| internalin A [Listeria monocytogenes]
gi|298360652|gb|ADI77905.1| internalin A [Listeria monocytogenes]
gi|298360680|gb|ADI77919.1| internalin A [Listeria monocytogenes]
gi|298360682|gb|ADI77920.1| internalin A [Listeria monocytogenes]
gi|298360694|gb|ADI77926.1| internalin A [Listeria monocytogenes]
gi|298360704|gb|ADI77931.1| internalin A [Listeria monocytogenes]
gi|298360706|gb|ADI77932.1| internalin A [Listeria monocytogenes]
gi|300512880|gb|EFK39971.1| internalin A precursor [Listeria monocytogenes FSL N1-017]
gi|302034315|gb|ADK92311.1| internalin A [Listeria monocytogenes]
gi|302034317|gb|ADK92312.1| internalin A [Listeria monocytogenes]
gi|404223732|emb|CBY75094.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2540]
gi|404226626|emb|CBY48031.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2755]
gi|404244734|emb|CBY02959.1| internalin A (LPXTG motif) [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|125979469|ref|XP_001353767.1| GA16643 [Drosophila pseudoobscura pseudoobscura]
gi|54640750|gb|EAL29501.1| GA16643 [Drosophila pseudoobscura pseudoobscura]
Length = 538
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/388 (27%), Positives = 171/388 (44%), Gaps = 45/388 (11%)
Query: 76 HLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
H + S+L+++D +F +++ G L + L NL +F NN I AF GL L
Sbjct: 121 HFPENSSLRNMDVSFNDLRLITGKL--MNRLPNLVYANFS-NNLIAEVEPNAFRGLKELQ 177
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
LDL +++ V L L L+I N + D + L GL NL+ L + + + +
Sbjct: 178 FLDLTTNEQVN---VTLGENANLRYLSIG-NNNVRDFLWRRLRGLPNLEELHLDSNWLEN 233
Query: 195 SGIAYLKGLQKLTLLNLEG---CPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFS 249
+ L +L LLN+ C + + S L L+ N ++ +D F+
Sbjct: 234 LDMGLFLALPRLRLLNVSNNNLCEIKGSLFTGPSGRAPLLLLDYSSNNVKVLEDSV--FA 291
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLTNLESIN 306
K+G L+ LNL N+I+ +GL+ LESL L + DE NLT L L+
Sbjct: 292 KLGDLRTLNLWLNQISKVHPRAFQGLSALESLQLQGNKISALPDEVFSNLTALQRLD--- 348
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
+S S+R+L AR L + L LTHLDL I +
Sbjct: 349 -----LSRNSIRQLG-----------AR------LFGGSLLGRLTHLDLSRNSIVELHPL 386
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L +LR L + G LT V+ L L +L + +N L +++ L L
Sbjct: 387 SLSGLPHLRELRLSGNKLTALDVRMFAPLRRLQVLAIGEN-RLEQIEEDILETFEHLSRL 445
Query: 427 NVSNSRITS-AGLRHLKPLKNLRSLTLE 453
+++N+R++ L+ + L LR +++E
Sbjct: 446 DINNNRLSFLPPLQAAQYLLRLRHVSIE 473
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 153/355 (43%), Gaps = 12/355 (3%)
Query: 116 NNAITAQGMKAFAGLI--NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ AI +A L L+ LDL + G L+ L +LE LN+ C + +
Sbjct: 61 HTAIEGDDPRALPALCLSRLLHLDLSESGGLTLGERGLRDLRQLERLNLTRCQ-LEELKE 119
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ ++L+++ +S + + + L L N + ++ L L +L
Sbjct: 120 EHFPENSSLRNMDVSFNDLRLITGKLMNRLPNLVYANFSNNLIAEVEPNAFRGLKELQFL 179
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L ++ + +L+ L++G N + D L+GL NLE L+LDS + + +
Sbjct: 180 DLT---TNEQVNVTLGENANLRYLSIGNNNVRDFLWRRLRGLPNLEELHLDSNWLENLDM 236
Query: 294 VNLTGLTNLESINLSFTGISD--GSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
L L +N+S + + GSL +G + L L+ + + + L L
Sbjct: 237 GLFLALPRLRLLNVSNNNLCEIKGSLFTGPSGRAPLLLLDYSSNNVKVLEDSVFAKLGDL 296
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L+L+ +I+ + L SL++ G ++ + +L++L L+LS+N ++
Sbjct: 297 RTLNLWLNQISKVHPRAFQGLSALESLQLQGNKISALPDEVFSNLTALQRLDLSRN-SIR 355
Query: 411 DKTLELISG--LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
L G L L L++S + I L L +LR L L K+TA D++
Sbjct: 356 QLGARLFGGSLLGRLTHLDLSRNSIVELHPLSLSGLPHLRELRLSGNKLTALDVR 410
>gi|219821333|gb|ACL37800.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DINPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--INPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|112959446|gb|ABI27250.1| internalin A [Listeria monocytogenes]
gi|112959466|gb|ABI27260.1| internalin A [Listeria monocytogenes]
gi|112959470|gb|ABI27262.1| internalin A [Listeria monocytogenes]
gi|112959474|gb|ABI27264.1| internalin A [Listeria monocytogenes]
gi|112959476|gb|ABI27265.1| internalin A [Listeria monocytogenes]
gi|112959478|gb|ABI27266.1| internalin A [Listeria monocytogenes]
gi|112959484|gb|ABI27269.1| internalin A [Listeria monocytogenes]
gi|112959486|gb|ABI27270.1| internalin A [Listeria monocytogenes]
gi|112959492|gb|ABI27273.1| internalin A [Listeria monocytogenes]
gi|112959494|gb|ABI27274.1| internalin A [Listeria monocytogenes]
gi|112959504|gb|ABI27279.1| internalin A [Listeria monocytogenes]
gi|112959516|gb|ABI27285.1| internalin A [Listeria monocytogenes]
gi|112959532|gb|ABI27293.1| internalin A [Listeria monocytogenes]
gi|112959534|gb|ABI27294.1| internalin A [Listeria monocytogenes]
gi|112959540|gb|ABI27297.1| internalin A [Listeria monocytogenes]
gi|112959544|gb|ABI27299.1| internalin A [Listeria monocytogenes]
gi|112959550|gb|ABI27302.1| internalin A [Listeria monocytogenes]
gi|112959554|gb|ABI27304.1| internalin A [Listeria monocytogenes]
gi|112959558|gb|ABI27306.1| internalin A [Listeria monocytogenes]
gi|112959560|gb|ABI27307.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 249
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 250 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 299
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 300 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 338
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|254828935|ref|ZP_05233622.1| internalin A [Listeria monocytogenes FSL N3-165]
gi|130774797|gb|ABO32413.1| InlA [Listeria monocytogenes]
gi|130774811|gb|ABO32418.1| InlA [Listeria monocytogenes]
gi|194239388|emb|CAQ76834.1| internalin A [Listeria monocytogenes]
gi|258601346|gb|EEW14671.1| internalin A [Listeria monocytogenes FSL N3-165]
gi|298360424|gb|ADI77791.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|298360122|gb|ADI77640.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|386042770|ref|YP_005961575.1| internalin A [Listeria monocytogenes 10403S]
gi|404409675|ref|YP_006695263.1| internalin A [Listeria monocytogenes SLCC5850]
gi|403399436|sp|G2K3G6.1|INLA_LISM4 RecName: Full=Internalin-A; Flags: Precursor
gi|150371722|dbj|BAF65676.1| internalin A [Listeria monocytogenes]
gi|150371786|dbj|BAF65682.1| internalin A [Listeria monocytogenes]
gi|150371800|dbj|BAF65689.1| internalin A [Listeria monocytogenes]
gi|150371810|dbj|BAF65694.1| internalin A [Listeria monocytogenes]
gi|150371812|dbj|BAF65695.1| internalin A [Listeria monocytogenes]
gi|150371816|dbj|BAF65697.1| internalin A [Listeria monocytogenes]
gi|150371826|dbj|BAF65702.1| internalin A [Listeria monocytogenes]
gi|150371840|dbj|BAF65709.1| internalin A [Listeria monocytogenes]
gi|150371842|dbj|BAF65710.1| internalin A [Listeria monocytogenes]
gi|150371862|dbj|BAF65720.1| internalin A [Listeria monocytogenes]
gi|150371866|dbj|BAF65722.1| internalin A [Listeria monocytogenes]
gi|167861902|gb|ACA05650.1| InlA [Listeria monocytogenes]
gi|167861984|gb|ACA05691.1| InlA [Listeria monocytogenes]
gi|167862000|gb|ACA05699.1| InlA [Listeria monocytogenes]
gi|167862006|gb|ACA05702.1| InlA [Listeria monocytogenes]
gi|194239412|emb|CAQ76846.1| internalin A [Listeria monocytogenes]
gi|223006784|gb|ACM69349.1| internalin A [Listeria monocytogenes]
gi|298359776|gb|ADI77467.1| internalin A [Listeria monocytogenes]
gi|298359804|gb|ADI77481.1| internalin A [Listeria monocytogenes]
gi|298359874|gb|ADI77516.1| internalin A [Listeria monocytogenes]
gi|298360072|gb|ADI77615.1| internalin A [Listeria monocytogenes]
gi|298360106|gb|ADI77632.1| internalin A [Listeria monocytogenes]
gi|298360118|gb|ADI77638.1| internalin A [Listeria monocytogenes]
gi|298360218|gb|ADI77688.1| internalin A [Listeria monocytogenes]
gi|298360262|gb|ADI77710.1| internalin A [Listeria monocytogenes]
gi|298360280|gb|ADI77719.1| internalin A [Listeria monocytogenes]
gi|298360386|gb|ADI77772.1| internalin A [Listeria monocytogenes]
gi|298360468|gb|ADI77813.1| internalin A [Listeria monocytogenes]
gi|298360570|gb|ADI77864.1| internalin A [Listeria monocytogenes]
gi|298360722|gb|ADI77940.1| internalin A [Listeria monocytogenes]
gi|302034307|gb|ADK92307.1| internalin A [Listeria monocytogenes]
gi|302034309|gb|ADK92308.1| internalin A [Listeria monocytogenes]
gi|302034311|gb|ADK92309.1| internalin A [Listeria monocytogenes]
gi|302034313|gb|ADK92310.1| internalin A [Listeria monocytogenes]
gi|302034319|gb|ADK92313.1| internalin A [Listeria monocytogenes]
gi|302034321|gb|ADK92314.1| internalin A [Listeria monocytogenes]
gi|302034323|gb|ADK92315.1| internalin A [Listeria monocytogenes]
gi|302034325|gb|ADK92316.1| internalin A [Listeria monocytogenes]
gi|345536004|gb|AEO05444.1| internalin A [Listeria monocytogenes 10403S]
gi|404229501|emb|CBY50905.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC5850]
gi|443428772|gb|AGC92185.1| internalin A [Listeria monocytogenes]
gi|443428780|gb|AGC92189.1| internalin A [Listeria monocytogenes]
gi|443428864|gb|AGC92231.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ LK LTNL L L S I D + L+GLTNL+ LSF G L+ LA L++L
Sbjct: 157 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|112961700|gb|ABI28486.1| internalin A [Listeria monocytogenes]
Length = 748
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 263
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 264 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 313
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 314 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 352
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 79
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 80 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 133
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 134 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 188
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 189 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|112961619|gb|ABI28432.1| internalin A [Listeria monocytogenes]
gi|112961637|gb|ABI28444.1| internalin A [Listeria monocytogenes]
gi|112961655|gb|ABI28456.1| internalin A [Listeria monocytogenes]
gi|112961658|gb|ABI28458.1| internalin A [Listeria monocytogenes]
gi|112961766|gb|ABI28530.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 263
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 264 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 313
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 314 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 352
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 79
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 80 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 133
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 134 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 188
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 189 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|112959518|gb|ABI27286.1| internalin A [Listeria monocytogenes]
gi|112959520|gb|ABI27287.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 249
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 250 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 299
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 300 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 338
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|371942070|gb|AEX60847.1| internaline [Listeria monocytogenes]
Length = 789
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|284800720|ref|YP_003412585.1| Internalin A [Listeria monocytogenes 08-5578]
gi|284993906|ref|YP_003415674.1| Internalin A [Listeria monocytogenes 08-5923]
gi|130774827|gb|ABO32426.1| InlA [Listeria monocytogenes]
gi|167862038|gb|ACA05718.1| InlA [Listeria monocytogenes]
gi|194326145|emb|CAQ77231.1| internalin A [Listeria monocytogenes]
gi|194326165|emb|CAQ77241.1| internalin A [Listeria monocytogenes]
gi|284056282|gb|ADB67223.1| Internalin A [Listeria monocytogenes 08-5578]
gi|284059373|gb|ADB70312.1| Internalin A [Listeria monocytogenes 08-5923]
gi|298359730|gb|ADI77444.1| internalin A [Listeria monocytogenes]
gi|298359786|gb|ADI77472.1| internalin A [Listeria monocytogenes]
gi|298359904|gb|ADI77531.1| internalin A [Listeria monocytogenes]
gi|298359978|gb|ADI77568.1| internalin A [Listeria monocytogenes]
gi|298360068|gb|ADI77613.1| internalin A [Listeria monocytogenes]
gi|298360228|gb|ADI77693.1| internalin A [Listeria monocytogenes]
gi|298360452|gb|ADI77805.1| internalin A [Listeria monocytogenes]
gi|298360556|gb|ADI77857.1| internalin A [Listeria monocytogenes]
gi|298360576|gb|ADI77867.1| internalin A [Listeria monocytogenes]
gi|298360600|gb|ADI77879.1| internalin A [Listeria monocytogenes]
gi|298360678|gb|ADI77918.1| internalin A [Listeria monocytogenes]
gi|443428872|gb|AGC92235.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112961772|gb|ABI28534.1| internalin A [Listeria monocytogenes]
Length = 748
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 263
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 264 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 313
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 314 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 352
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 79
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 80 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 133
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 134 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 188
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 189 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|112959508|gb|ABI27281.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 249
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 250 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 299
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 300 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 338
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|371942140|gb|AEX60882.1| internaline [Listeria monocytogenes]
Length = 790
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|371942076|gb|AEX60850.1| internaline [Listeria monocytogenes]
gi|371942078|gb|AEX60851.1| internaline [Listeria monocytogenes]
gi|371942082|gb|AEX60853.1| internaline [Listeria monocytogenes]
Length = 789
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|130774759|gb|ABO32394.1| InlA [Listeria monocytogenes]
gi|298360132|gb|ADI77645.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|22347548|gb|AAM95919.1| internalin A precursor [Listeria monocytogenes]
gi|22347558|gb|AAM95924.1| internalin A precursor [Listeria monocytogenes]
gi|22347560|gb|AAM95925.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 256
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 257 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 306
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 307 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 345
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 37 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|112959438|gb|ABI27246.1| internalin A [Listeria monocytogenes]
gi|112959450|gb|ABI27252.1| internalin A [Listeria monocytogenes]
gi|112959456|gb|ABI27255.1| internalin A [Listeria monocytogenes]
gi|112959496|gb|ABI27275.1| internalin A [Listeria monocytogenes]
gi|112959498|gb|ABI27276.1| internalin A [Listeria monocytogenes]
gi|112959526|gb|ABI27290.1| internalin A [Listeria monocytogenes]
gi|112959528|gb|ABI27291.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 249
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 250 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 299
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 300 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 338
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|112959452|gb|ABI27253.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 249
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 250 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 299
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 300 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 338
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|313485052|gb|ADR53000.1| InlA [Listeria monocytogenes]
Length = 771
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112961622|gb|ABI28434.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 263
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 264 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 313
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 314 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 352
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 79
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 80 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 133
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 134 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 188
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 189 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|112959552|gb|ABI27303.1| internalin A [Listeria monocytogenes]
gi|112959556|gb|ABI27305.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 249
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 250 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 299
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 300 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 338
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|22347562|gb|AAM95926.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 256
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 257 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 306
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 307 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 345
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 37 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|223698697|gb|ACN19038.1| truncated internalin A [Listeria monocytogenes]
gi|223698841|gb|ACN19134.1| truncated internalin A [Listeria monocytogenes]
gi|223698877|gb|ACN19158.1| truncated internalin A [Listeria monocytogenes]
gi|223698922|gb|ACN19188.1| truncated internalin A [Listeria monocytogenes]
Length = 406
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 316
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|130774769|gb|ABO32399.1| InlA [Listeria monocytogenes]
gi|130774773|gb|ABO32401.1| InlA [Listeria monocytogenes]
gi|167861932|gb|ACA05665.1| InlA [Listeria monocytogenes]
gi|167861992|gb|ACA05695.1| InlA [Listeria monocytogenes]
gi|167861994|gb|ACA05696.1| InlA [Listeria monocytogenes]
gi|167861998|gb|ACA05698.1| InlA [Listeria monocytogenes]
gi|167862004|gb|ACA05701.1| InlA [Listeria monocytogenes]
gi|167862034|gb|ACA05716.1| InlA [Listeria monocytogenes]
gi|194326169|emb|CAQ77243.1| internalin A [Listeria monocytogenes]
gi|298359894|gb|ADI77526.1| internalin A [Listeria monocytogenes]
gi|298360034|gb|ADI77596.1| internalin A [Listeria monocytogenes]
gi|298360110|gb|ADI77634.1| internalin A [Listeria monocytogenes]
gi|298360112|gb|ADI77635.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112959506|gb|ABI27280.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 249
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 250 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 299
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 300 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 338
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|371942068|gb|AEX60846.1| internaline [Listeria monocytogenes]
gi|371942088|gb|AEX60856.1| internaline [Listeria monocytogenes]
gi|371942106|gb|AEX60865.1| internaline [Listeria monocytogenes]
gi|371942134|gb|AEX60879.1| internaline [Listeria monocytogenes]
Length = 790
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821255|gb|ACL37748.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|254825753|ref|ZP_05230754.1| internalin A [Listeria monocytogenes FSL J1-194]
gi|255521302|ref|ZP_05388539.1| internalin A [Listeria monocytogenes FSL J1-175]
gi|130774771|gb|ABO32400.1| InlA [Listeria monocytogenes]
gi|130774777|gb|ABO32403.1| InlA [Listeria monocytogenes]
gi|130774779|gb|ABO32404.1| InlA [Listeria monocytogenes]
gi|150371874|dbj|BAF65726.1| internalin A [Listeria monocytogenes]
gi|150371876|dbj|BAF65727.1| internalin A [Listeria monocytogenes]
gi|223006790|gb|ACM69352.1| internalin A [Listeria monocytogenes]
gi|290350838|dbj|BAI78340.1| internalin A [Listeria monocytogenes]
gi|293594997|gb|EFG02758.1| internalin A [Listeria monocytogenes FSL J1-194]
gi|298359742|gb|ADI77450.1| internalin A [Listeria monocytogenes]
gi|298359744|gb|ADI77451.1| internalin A [Listeria monocytogenes]
gi|298359756|gb|ADI77457.1| internalin A [Listeria monocytogenes]
gi|298359790|gb|ADI77474.1| internalin A [Listeria monocytogenes]
gi|298359872|gb|ADI77515.1| internalin A [Listeria monocytogenes]
gi|298359880|gb|ADI77519.1| internalin A [Listeria monocytogenes]
gi|298359942|gb|ADI77550.1| internalin A [Listeria monocytogenes]
gi|298359946|gb|ADI77552.1| internalin A [Listeria monocytogenes]
gi|298360032|gb|ADI77595.1| internalin A [Listeria monocytogenes]
gi|298360064|gb|ADI77611.1| internalin A [Listeria monocytogenes]
gi|298360114|gb|ADI77636.1| internalin A [Listeria monocytogenes]
gi|298360202|gb|ADI77680.1| internalin A [Listeria monocytogenes]
gi|298360282|gb|ADI77720.1| internalin A [Listeria monocytogenes]
gi|298360284|gb|ADI77721.1| internalin A [Listeria monocytogenes]
gi|298360314|gb|ADI77736.1| internalin A [Listeria monocytogenes]
gi|298360330|gb|ADI77744.1| internalin A [Listeria monocytogenes]
gi|298360346|gb|ADI77752.1| internalin A [Listeria monocytogenes]
gi|298360410|gb|ADI77784.1| internalin A [Listeria monocytogenes]
gi|298360420|gb|ADI77789.1| internalin A [Listeria monocytogenes]
gi|298360440|gb|ADI77799.1| internalin A [Listeria monocytogenes]
gi|298360454|gb|ADI77806.1| internalin A [Listeria monocytogenes]
gi|298360470|gb|ADI77814.1| internalin A [Listeria monocytogenes]
gi|298360494|gb|ADI77826.1| internalin A [Listeria monocytogenes]
gi|298360506|gb|ADI77832.1| internalin A [Listeria monocytogenes]
gi|298360604|gb|ADI77881.1| internalin A [Listeria monocytogenes]
gi|298360610|gb|ADI77884.1| internalin A [Listeria monocytogenes]
gi|298360612|gb|ADI77885.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|130774815|gb|ABO32420.1| InlA [Listeria monocytogenes]
gi|194239404|emb|CAQ76842.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|313485054|gb|ADR53001.1| InlA [Listeria monocytogenes]
Length = 771
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|298360360|gb|ADI77759.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|130774755|gb|ABO32392.1| InlA [Listeria monocytogenes]
gi|130774767|gb|ABO32398.1| InlA [Listeria monocytogenes]
gi|298359732|gb|ADI77445.1| internalin A [Listeria monocytogenes]
gi|298360004|gb|ADI77581.1| internalin A [Listeria monocytogenes]
gi|298360478|gb|ADI77818.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|322952085|gb|ADX21042.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|130774791|gb|ABO32410.1| InlA [Listeria monocytogenes]
gi|298360240|gb|ADI77699.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 365 RLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112961616|gb|ABI28430.1| internalin A [Listeria monocytogenes]
gi|112961649|gb|ABI28452.1| internalin A [Listeria monocytogenes]
gi|112961652|gb|ABI28454.1| internalin A [Listeria monocytogenes]
gi|112961664|gb|ABI28462.1| internalin A [Listeria monocytogenes]
gi|112961691|gb|ABI28480.1| internalin A [Listeria monocytogenes]
gi|112961718|gb|ABI28498.1| internalin A [Listeria monocytogenes]
gi|112961727|gb|ABI28504.1| internalin A [Listeria monocytogenes]
gi|112961748|gb|ABI28518.1| internalin A [Listeria monocytogenes]
gi|112961751|gb|ABI28520.1| internalin A [Listeria monocytogenes]
gi|112961769|gb|ABI28532.1| internalin A [Listeria monocytogenes]
gi|112961775|gb|ABI28536.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 263
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 264 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 313
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 314 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 352
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 79
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 80 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 133
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 134 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 188
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 189 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|149674|gb|AAA25289.1| internalin [Listeria monocytogenes]
gi|22347564|gb|AAM95927.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 256
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 257 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 306
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 307 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 345
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 37 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|219821261|gb|ACL37752.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|29423714|gb|AAO73555.1| internalin A [Listeria monocytogenes]
Length = 743
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 41 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 94
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 95 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 146
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 147 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 199
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 200 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 255
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 256 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 305
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 306 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 344
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 36 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 88
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 89 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 141
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 142 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 197
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 198 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 251
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 252 ----NISPLAGLTALT 263
>gi|226223065|ref|YP_002757172.1| Internalin A [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|386731210|ref|YP_006204706.1| internalin A [Listeria monocytogenes 07PF0776]
gi|406703224|ref|YP_006753578.1| internalin A (LPXTG motif) [Listeria monocytogenes L312]
gi|167861892|gb|ACA05645.1| InlA [Listeria monocytogenes]
gi|167861914|gb|ACA05656.1| InlA [Listeria monocytogenes]
gi|167861978|gb|ACA05688.1| InlA [Listeria monocytogenes]
gi|194239396|emb|CAQ76838.1| internalin A [Listeria monocytogenes]
gi|225875527|emb|CAS04230.1| Internalin A [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|298359780|gb|ADI77469.1| internalin A [Listeria monocytogenes]
gi|384389968|gb|AFH79038.1| internalin A [Listeria monocytogenes 07PF0776]
gi|406360254|emb|CBY66527.1| internalin A (LPXTG motif) [Listeria monocytogenes L312]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|313485048|gb|ADR52999.1| InlA [Listeria monocytogenes]
gi|313485083|gb|ADR53012.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|298359924|gb|ADI77541.1| internalin A [Listeria monocytogenes]
gi|298359926|gb|ADI77542.1| internalin A [Listeria monocytogenes]
gi|298360172|gb|ADI77665.1| internalin A [Listeria monocytogenes]
gi|298360388|gb|ADI77773.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|223698610|gb|ACN18980.1| internalin A [Listeria monocytogenes]
gi|223698616|gb|ACN18984.1| internalin A [Listeria monocytogenes]
gi|223698631|gb|ACN18994.1| internalin A [Listeria monocytogenes]
gi|223698637|gb|ACN18998.1| internalin A [Listeria monocytogenes]
gi|223698640|gb|ACN19000.1| internalin A [Listeria monocytogenes]
gi|223698649|gb|ACN19006.1| internalin A [Listeria monocytogenes]
gi|223698652|gb|ACN19008.1| internalin A [Listeria monocytogenes]
gi|223698661|gb|ACN19014.1| internalin A [Listeria monocytogenes]
gi|223698667|gb|ACN19018.1| internalin A [Listeria monocytogenes]
gi|223698676|gb|ACN19024.1| internalin A [Listeria monocytogenes]
gi|223698679|gb|ACN19026.1| internalin A [Listeria monocytogenes]
gi|223698685|gb|ACN19030.1| internalin A [Listeria monocytogenes]
gi|223698688|gb|ACN19032.1| internalin A [Listeria monocytogenes]
gi|223698709|gb|ACN19046.1| internalin A [Listeria monocytogenes]
gi|223698721|gb|ACN19054.1| internalin A [Listeria monocytogenes]
gi|223698724|gb|ACN19056.1| internalin A [Listeria monocytogenes]
gi|223698727|gb|ACN19058.1| internalin A [Listeria monocytogenes]
gi|223698730|gb|ACN19060.1| internalin A [Listeria monocytogenes]
gi|223698733|gb|ACN19062.1| internalin A [Listeria monocytogenes]
gi|223698742|gb|ACN19068.1| internalin A [Listeria monocytogenes]
gi|223698763|gb|ACN19082.1| internalin A [Listeria monocytogenes]
gi|223698790|gb|ACN19100.1| internalin A [Listeria monocytogenes]
gi|223698808|gb|ACN19112.1| internalin A [Listeria monocytogenes]
gi|223698811|gb|ACN19114.1| internalin A [Listeria monocytogenes]
gi|223698823|gb|ACN19122.1| internalin A [Listeria monocytogenes]
gi|223698853|gb|ACN19142.1| internalin A [Listeria monocytogenes]
gi|223698874|gb|ACN19156.1| internalin A [Listeria monocytogenes]
gi|223698889|gb|ACN19166.1| internalin A [Listeria monocytogenes]
gi|223698949|gb|ACN19206.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|112961646|gb|ABI28450.1| internalin A [Listeria monocytogenes]
gi|112961721|gb|ABI28500.1| internalin A [Listeria monocytogenes]
gi|112961757|gb|ABI28524.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 263
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 264 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 313
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 314 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 352
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 79
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 80 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 133
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 134 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 188
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 189 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|223698883|gb|ACN19162.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|223698625|gb|ACN18990.1| internalin A [Listeria monocytogenes]
gi|223698736|gb|ACN19064.1| internalin A [Listeria monocytogenes]
gi|223698739|gb|ACN19066.1| internalin A [Listeria monocytogenes]
gi|223698847|gb|ACN19138.1| internalin A [Listeria monocytogenes]
gi|223698904|gb|ACN19176.1| internalin A [Listeria monocytogenes]
gi|223698955|gb|ACN19210.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|112961679|gb|ABI28472.1| internalin A [Listeria monocytogenes]
gi|112961682|gb|ABI28474.1| internalin A [Listeria monocytogenes]
gi|112961685|gb|ABI28476.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 263
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 264 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 313
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 314 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 352
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 79
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 80 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 133
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 134 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 188
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 189 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|371942090|gb|AEX60857.1| internaline [Listeria monocytogenes]
Length = 790
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|322952090|gb|ADX21044.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|332376374|gb|AEE63327.1| unknown [Dendroctonus ponderosae]
Length = 507
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 130/308 (42%), Gaps = 32/308 (10%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K GL L+ LQ++ +++ G +K+ LNLE ++ + L L L
Sbjct: 108 KAFMGLVFLQHLQLNNNQIRSIFPGTFIGTKKIEQLNLENNEISILVEGGFAELLQLSVL 167
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH--LKGLTNLESLNLDSCGIGDE 291
NL + FS + L +L+LGFN+ITD +H L LT LE L ++ I
Sbjct: 168 NLRSNNIKIIDPRAFSGLQKLVLLDLGFNQITD---LHQSLVNLTALEVLKMEHNLIHQL 224
Query: 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
+ L NL +NLS + D + + LKSL+L QI + G+
Sbjct: 225 SGSEFSSLANLYQLNLSANLLVDNFTIHMQPGNQLKSLSLSHNQIEELKF-------GMA 277
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
HLD L L++ ++D G + + SL L L N NL+
Sbjct: 278 HLD------------------TLEELQLSFNNISDIGNNMFEGMFSLRQLELPYN-NLSQ 318
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 471
SGL L SLN S++ I + + PL+NL L L + + D L SR LP
Sbjct: 319 FKTGWFSGLPQLTSLNFSHNHIEEIVISSVFPLRNLHFLDLSNNALGTFDYSALISR-LP 377
Query: 472 NLVSFRPE 479
L R E
Sbjct: 378 GLTYLRLE 385
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKG 153
+GG L LS L R+N I +AF+GL LV LDL + T +H LVNL
Sbjct: 155 EGGFAELLQLSVLN----LRSNNIKIIDPRAFSGLQKLVLLDLGFNQITDLHQSLVNLTA 210
Query: 154 L--MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L +K+E N I S L NL L +S + + D+ +++ +L L+L
Sbjct: 211 LEVLKMEH------NLIHQLSGSEFSSLANLYQLNLSANLLVDNFTIHMQPGNQLKSLSL 264
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+ ++ L +L L L+ +SD G F + SL+ L L +N ++
Sbjct: 265 SHNQIEELKF-GMAHLDTLEELQLSFNNISDIGNNMFEGMFSLRQLELPYNNLSQFKTGW 323
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS--FTGISDGS--LRKLAGLSSLK 327
GL L SLN I + + ++ L NL ++LS G D S + +L GL+ L+
Sbjct: 324 FSGLPQLTSLNFSHNHIEEIVISSVFPLRNLHFLDLSNNALGTFDYSALISRLPGLTYLR 383
>gi|112959468|gb|ABI27261.1| internalin A [Listeria monocytogenes]
Length = 730
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 28 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 81
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 82 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 133
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 134 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 186
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 187 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 242
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 243 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 292
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 293 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 331
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 23 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 75
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 76 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 128
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 129 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 184
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 185 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 238
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 239 ----NISPLAGLTALT 250
>gi|313485079|gb|ADR53010.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821366|gb|ACL37822.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|443688071|gb|ELT90873.1| hypothetical protein CAPTEDRAFT_165456 [Capitella teleta]
Length = 642
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 121/433 (27%), Positives = 197/433 (45%), Gaps = 63/433 (14%)
Query: 18 RC--LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
RC +T ++ + R+C LQDL L + P ++D + ++ ++ +++S S +TD+ L
Sbjct: 171 RCERITSLTFYSIRECRNLQDLNLSECPALDDDSLKMVLEGCKIIIYLNISHSLITDASL 230
Query: 75 IHL-KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAG- 129
+ K C NLQ L FC++ SD GL++L L L + +T G+ +
Sbjct: 231 RSISKYCLNLQYLSLAFCLRYSDKGLQYLANGESAKRLNHLDISGCSQVTPNGLAKLSEG 290
Query: 130 -------LINLVKLDLERCTR-IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
L+N ++ + C I NL+ + L S N ++D+ +K ++
Sbjct: 291 CSDVQTLLLNDIESFDDACLEAITDNCKNLRNISFLGSHN------LSDNALKNVATSKK 344
Query: 182 LKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC 238
L+ L+I S K+TD Y+ K +L L L C +T L LS +L +NL C
Sbjct: 345 LQMLKIDSNCKITDITFKYIGKSCHELRHLYLVDCHRITDLTLKVLSQCRNLTVVNLADC 404
Query: 239 -QLSDDG--------------------CEKFSKIG---------SLKVLNLGFNEITDEC 268
+++D G C + I +L L+L F E E
Sbjct: 405 VRITDTGVRYLVESSCGNKLQELNLTNCIRVGDIALVNIHKRCHNLTYLHLCFCEHISEA 464
Query: 269 LVHLKGLTN-LESLNLDSCGIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLA-GLSS 325
+ L G T+ L +L++ C GD GL +L L+ +NLS + I+D L+K A +
Sbjct: 465 GIELLGQTHSLTALDISGCNCGDAGLSSLGNNIRLKDVNLSECSAITDLGLQKFAQQCTE 524
Query: 326 LKSLNLDARQ-ITDTGLAALT-SLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEICG 381
++ L+L Q ITD + L LTHL L G + +TD YL L L+I G
Sbjct: 525 IERLDLSHCQMITDGAIKNLAFCCRMLTHLSLAGCKLLTDLSVQYLSGVCHYLLYLDISG 584
Query: 382 G-GLTDAGVKHIK 393
+TD +K++K
Sbjct: 585 SLHITDKSMKYLK 597
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 107/218 (49%), Gaps = 10/218 (4%)
Query: 52 IASQGSSLLSVDLSGS-DVTDSGLIHLKD--CSN-LQSLDFNFCIQISDGGLEHL-RGLS 106
+ SQ +L V+L+ +TD+G+ +L + C N LQ L+ CI++ D L ++ +
Sbjct: 389 VLSQCRNLTVVNLADCVRITDTGVRYLVESSCGNKLQELNLTNCIRVGDIALVNIHKRCH 448
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
NLT L I+ G++ +L LD+ C GL +L ++L+ +N+ C+
Sbjct: 449 NLTYLHLCFCEHISEAGIELLGQTHSLTALDISGCNCGDAGLSSLGNNIRLKDVNLSECS 508
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCP-VTAACLD 222
ITD ++ + T ++ L +S C +TD I L + LT L+L GC +T +
Sbjct: 509 AITDLGLQKFAQQCTEIERLDLSHCQMITDGAIKNLAFCCRMLTHLSLAGCKLLTDLSVQ 568
Query: 223 SLSAL-GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
LS + L YL+++ D K+ K G K+ L
Sbjct: 569 YLSGVCHYLLYLDISGSLHITDKSMKYLKKGCKKLQTL 606
>gi|219821339|gb|ACL37804.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 343
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|112961697|gb|ABI28484.1| internalin A [Listeria monocytogenes]
gi|112961709|gb|ABI28492.1| internalin A [Listeria monocytogenes]
gi|112961730|gb|ABI28506.1| internalin A [Listeria monocytogenes]
gi|112961760|gb|ABI28526.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 263
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 264 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 313
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 314 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 352
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 79
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 80 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 133
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 134 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 188
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 189 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|168700133|ref|ZP_02732410.1| hypothetical protein GobsU_11435 [Gemmata obscuriglobus UQM 2246]
Length = 167
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 314 DGSLRKLAGLSS-LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
D +++LA L+ L +LNL ++TD G+ L +L LT+LDL G +TD+G L K
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
L LE+ +TDAGVK + L +L L+L +TD + +SGL LV+L++SN++
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLG-GTKVTDAGAKELSGLNFLVTLDLSNTQ 123
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 471
+T AG++ L L L +L L VT +K L + LP
Sbjct: 124 VTDAGVKALTALTGLTTLDLHGTGVTDAGLKELNAA-LP 161
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
KGLT +LNL + D G+ L L L +++L TG++D +++L+GL L L L
Sbjct: 16 KGLT---TLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKGLTRLELR 72
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ +ITD G+ L +L L HLDL G ++TD+GA L L +L++ +TDAGVK
Sbjct: 73 STKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVK 130
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 88/147 (59%), Gaps = 1/147 (0%)
Query: 219 ACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
A + L+AL L LNL R +++D G ++ + + +L L+LG +TD + L GL
Sbjct: 6 AGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKG 65
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L L S I D G+ L L NL ++L T ++D ++L+GL+ L +L+L Q+T
Sbjct: 66 LTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVT 125
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSG 364
D G+ ALT+LTGLT LDL G +TD+G
Sbjct: 126 DAGVKALTALTGLTTLDLHGTGVTDAG 152
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 1/152 (0%)
Query: 242 DDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
D G ++ + + L LNL +TD + L L L +L+L G+ D G+ L+GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
L + L T I+D +++LA L +L L+L ++TD G L+ L L LDL ++
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
TD+G L L +L++ G G+TDAG+K +
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAGLKEL 156
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 170 DSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
D+ +K L+ L L +L + ++VTD G+ L L+ LT L+L G VT A + LS L
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L L +++D G ++ + + +L L+LG ++TD L GL L +L+L + +
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
D G+ LT LT L +++L TG++D L++L
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAGLKEL 156
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L +LN++ +TD +K L+ L L +L + + VTD+G+ L GL+ LT L L +
Sbjct: 18 LTTLNLRRTR-VTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKGLTRLELRSTKI 76
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T A + L+AL +L +L+L +++D G ++ S + L L+L ++TD + L LT
Sbjct: 77 TDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKALTALT 136
Query: 277 NLESLNLDSCGIGDEGLVNL 296
L +L+L G+ D GL L
Sbjct: 137 GLTTLDLHGTGVTDAGLKEL 156
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 81/154 (52%), Gaps = 1/154 (0%)
Query: 194 DSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
D+G+ L L K LT LNL VT + L+AL +L L+L ++D G ++ S +
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
L L L +ITD + L L NL L+L + D G L+GL L +++LS T +
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
+D ++ L L+ L +L+L +TD GL L +
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAGLKELNA 158
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 96 DGGLEHLRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
D G++ L L+ LT+L+ RR +T G+K A L L LDL G+ L GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTR-VTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGL 63
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
L L ++ ITD+ +K L+ L NL L + +KVTD+G L GL L L+L
Sbjct: 64 KGLTRLELRSTK-ITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNT 122
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
VT A + +L+AL L L+L+ ++D G ++ +
Sbjct: 123 QVTDAGVKALTALTGLTTLDLHGTGVTDAGLKELN 157
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 86/181 (47%), Gaps = 27/181 (14%)
Query: 46 DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
D + +A+ L +++L + VTD G+ L L +LD ++D G++ L GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGT-GVTDAGVKELSGL 63
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
LT L R + IT G+K A L NL LDL GG
Sbjct: 64 KGLTRLELR-STKITDAGVKELAALKNLNHLDL-------GG------------------ 97
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD+ K LSGL L +L +S ++VTD+G+ L L LT L+L G VT A L L+
Sbjct: 98 TKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKALTALTGLTTLDLHGTGVTDAGLKELN 157
Query: 226 A 226
A
Sbjct: 158 A 158
>gi|322952088|gb|ADX21043.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|302768605|ref|XP_002967722.1| hypothetical protein SELMODRAFT_88742 [Selaginella moellendorffii]
gi|300164460|gb|EFJ31069.1| hypothetical protein SELMODRAFT_88742 [Selaginella moellendorffii]
Length = 645
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 108/421 (25%), Positives = 188/421 (44%), Gaps = 49/421 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L + D + ++A++ L+ +DLS ++VTD G+ ++ + L++L+ C
Sbjct: 181 LKTLVLKGCVAITDAGIKLVAARSEELMILDLSFTEVTDEGVKYVSELKALRTLNLMACN 240
Query: 93 QISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN 150
+ D L +L+ +L L R +++ G+ A L L+ L L C+++ ++
Sbjct: 241 NVGDRALSYLQENCKSLVDLDVSRCQNVSSVGI---AALPTLLTLHLCHCSQVTEDAFLD 297
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYL----KGLQK 205
+ +++L + C DS + +G LK L + S+ VTD I L K L+K
Sbjct: 298 FEKPNGIQTLRLDGCEFTHDSLDRVAAGCQELKELSLCKSRGVTDKRIDRLITSCKSLKK 357
Query: 206 LTL--------LNLEGCPVTAACLDSLSALGSLFY-----------------LNLNRCQL 240
L L ++L ++ + SL SL L++ C L
Sbjct: 358 LDLTCCFDVTEISLLSIARSSTSIKSLKLESSLMVSDNSLPMVFESCHLLEELDVTDCNL 417
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT- 297
+ G E L+VL L F I+D + + G L L+L C +GD G++++
Sbjct: 418 TGAGLEPIGNCVLLRVLKLAFCNISDYGIFFVGAGCHKLMELDLYRCRSVGDAGVISVVN 477
Query: 298 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-LTGLTHLD 354
G +L +NLS+ + ISD S+ +A LS L L + +T GL + + L LD
Sbjct: 478 GCQDLRVLNLSYCSRISDASMTAIARLSKLSQLEIRGCTLVTSDGLTQVAAGCKRLVELD 537
Query: 355 L-FGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLT------LLNLSQN 406
+ RI D G L + +LR + + LT+ G+ + L + L N+S
Sbjct: 538 IKRCTRIGDPGLLALEHLCPDLRQINVSYCPLTNNGMMALAKLGCMQNMKLVHLKNVSME 597
Query: 407 C 407
C
Sbjct: 598 C 598
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 114/439 (25%), Positives = 205/439 (46%), Gaps = 41/439 (9%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
L + G + ++ SL+ +DLS S V D GL+ L + ++ L CI+++D
Sbjct: 109 LNRICGFTSTGLRYLSQHCLSLVEMDLSYCSYVEDDGLLGLARLNRIEKLKLTGCIRVTD 168
Query: 97 GGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
GLE L G L +L + AIT G+K A
Sbjct: 169 MGLESLAAGCHRLKTLVLKGCVAITDAGIKLVAARSE----------------------- 205
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLK-GLQKLTLLNLEG 213
+L L++ + +TD +K +S L L++L ++C+ V D ++YL+ + L L++
Sbjct: 206 ELMILDLSFTE-VTDEGVKYVSELKALRTLNLMACNNVGDRALSYLQENCKSLVDLDVSR 264
Query: 214 CPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
C ++ ++AL +L L+L C Q+++D F K ++ L L E T + L +
Sbjct: 265 CQNVSSV--GIAALPTLLTLHLCHCSQVTEDAFLDFEKPNGIQTLRLDGCEFTHDSLDRV 322
Query: 273 -KGLTNLESLNL-DSCGIGDEGLVNL-TGLTNLESINLSFT-GISDGSLRKLAGLS-SLK 327
G L+ L+L S G+ D+ + L T +L+ ++L+ +++ SL +A S S+K
Sbjct: 323 AAGCQELKELSLCKSRGVTDKRIDRLITSCKSLKKLDLTCCFDVTEISLLSIARSSTSIK 382
Query: 328 SLNLDAR-QITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
SL L++ ++D L S L LD+ +T +G + N LR L++ ++
Sbjct: 383 SLKLESSLMVSDNSLPMVFESCHLLEELDVTDCNLTGAGLEPIGNCVLLRVLKLAFCNIS 442
Query: 386 DAGVKHI-KDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHLK 442
D G+ + L L+L + ++ D + +++G L LN+S SRI+ A + +
Sbjct: 443 DYGIFFVGAGCHKLMELDLYRCRSVGDAGVISVVNGCQDLRVLNLSYCSRISDASMTAIA 502
Query: 443 PLKNLRSLTLESCKVTAND 461
L L L + C + +D
Sbjct: 503 RLSKLSQLEIRGCTLVTSD 521
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 264 ITDECLVHL--KGLTNLESLNLDS-CGIGDEGLVNLT-GLTNLESINLSF-TGISDGSLR 318
+TDE L+H+ K L ++ L+ CG GL L+ +L ++LS+ + + D L
Sbjct: 88 VTDENLIHVADKAGKRLAAIYLNRICGFTSTGLRYLSQHCLSLVEMDLSYCSYVEDDGLL 147
Query: 319 KLAGLSSLKSLNLD-ARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLR-NFKNL 374
LA L+ ++ L L ++TD GL +L + L L L G ITD+G + + L
Sbjct: 148 GLARLNRIEKLKLTGCIRVTDMGLESLAAGCHRLKTLVLKGCVAITDAGIKLVAARSEEL 207
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSR- 432
L++ +TD GVK++ +L +L LNL N+ D+ L + LV L+VS +
Sbjct: 208 MILDLSFTEVTDEGVKYVSELKALRTLNLMACNNVGDRALSYLQENCKSLVDLDVSRCQN 267
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVT 458
++S G+ L L LTL C +
Sbjct: 268 VSSVGIAALPTL-----LTLHLCHCS 288
>gi|219821276|gb|ACL37762.1| internalin A [Listeria monocytogenes]
gi|219821336|gb|ACL37802.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|441470006|emb|CCQ19761.1| Internalin-A [Listeria monocytogenes]
Length = 489
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|168704644|ref|ZP_02736921.1| hypothetical protein GobsU_34225 [Gemmata obscuriglobus UQM 2246]
Length = 952
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 113/342 (33%), Positives = 160/342 (46%), Gaps = 50/342 (14%)
Query: 46 DKWMDVIASQ---GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
DK ++++ +Q G SL + LS +D+ D L L + L+ LD + C +SD L
Sbjct: 619 DKRLEMLWTQIRRGLSLRRLVLSKTDIAD--LSPLAPLTALEELDLSGCAGVSD-----L 671
Query: 103 RGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L+NLT+L F + + A L L LDL C + L L L LE LN
Sbjct: 672 SPLANLTALRFLDLSGCAGGADLSPLANLTALRFLDLSGCAGV-SDLAPLANLTALEGLN 730
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAA 219
++ C + SD+ PL+ LT L+ L +S C+ D S +A L GL+ LNL GC +
Sbjct: 731 LRGCAGV--SDLSPLANLTGLRHLNLSGCAGWADLSPLANLTGLRH---LNLNGC-TGVS 784
Query: 220 CLDSLSALGSLFYLNLNRCQLSDD----------------GCEKFSKIGSLKVLN-LGFN 262
L L+ L +L L+L+ C D GC S + L L F
Sbjct: 785 DLSPLAPLTALEELDLSGCAGVSDLSPLANLTALEGLDLSGCAGVSDLSPLAPHTALRFL 844
Query: 263 EITD----ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF-TGISDGS 316
+++ CL L T L L+L C G+ D L L LT LE ++LS G+SD
Sbjct: 845 DLSGCAGVSCLSPLAPHTALRFLDLSGCAGVSD--LSPLANLTALEDLDLSGCAGVSD-- 900
Query: 317 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 357
L LA L++L+ L+L + D L+ L LT L LDL G
Sbjct: 901 LSPLANLTALEGLDLSGCTGVLD--LSPLAPLTALQFLDLGG 940
>gi|219821330|gb|ACL37798.1| internalin A [Listeria monocytogenes]
gi|219821348|gb|ACL37810.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 168/337 (49%), Gaps = 44/337 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
L L + +++D + L N N+ L ++D
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLSAAHNQISD 339
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|281211117|gb|EFA85283.1| Histidine kinase A [Polysphondylium pallidum PN500]
Length = 1839
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 199/410 (48%), Gaps = 47/410 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ++ L + V D + IA+ L++V L ++TD+ +IHL + C + +L + C
Sbjct: 1413 LQNINLNKCRAVTDDKIIAIANMQLPLVNVYLKKCNITDNAIIHLTQSCPKIAALQLSGC 1472
Query: 92 IQISDGGLEHLRGLSN---LTSLSFRRNNAITAQGM-KAFAGLINLVKLDL-ERCTRIHG 146
+ D + + +N L L +R +T+ + K F L N+ + L E +
Sbjct: 1473 KNLGDASINAI--ATNCLGLRELRMKRCPLVTSNSIDKMFRLLHNIHIVTLAESPMAVSD 1530
Query: 147 GLVNLKGLM--KLESLNIKWCNCITDSDMKPLSGLTN-LKSLQIS-CSKVTDSGIAYL-K 201
+ L G +++ +N+ + ITD + L TN ++ L IS C +TD GI ++ +
Sbjct: 1531 NTLRLMGKYCTEIQCVNVSHNSIITDVGLINLVKFTNTIQELNISQCVNITDIGIQHIAQ 1590
Query: 202 GLQKLTLLNLEGC-------PVTAACLDSLSALGSLFYLNLNRC-QLSDD------GCEK 247
KL +L + G P+ +C D L L+++ C ++S D GC K
Sbjct: 1591 ACGKLRILRMSGLNNVTSLKPIGKSCAD-------LVELDISECHKISSDLGYITKGCPK 1643
Query: 248 FSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLTNLESI 305
+ + L + ++++ +H ++ L L+ I + + ++T +L S+
Sbjct: 1644 LTSFKLRRCYGLQDVSLLSEDGEIH--AMSKLSVLDWSYGNIEFQTIHSITHSCKSLTSL 1701
Query: 306 NLSF-TGISDGSLRKLAG-LSSLKSLNLDAR-QITDTGLAALTSL---TGLTHLDLFGAR 359
N+S+ ++D S+ ++A LS+LK L +D+ ITD G+ AL+ + + L L G R
Sbjct: 1702 NISYCKSLTDTSIERIASSLSNLKKLKMDSVVNITDDGIKALSEAPIASSIEDLSLVGCR 1761
Query: 360 -ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS-QNC 407
I+D A Y+ F NL+ L + G +T AGV+ I S L+ +S +NC
Sbjct: 1762 KISDVSAQYILRFHNLKKLSLGGCLMTTAGVESIA-AESFELVKISIRNC 1810
>gi|441473145|emb|CCQ22899.1| Internalin-A [Listeria monocytogenes N53-1]
Length = 455
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|241575665|ref|XP_002403227.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
gi|215502182|gb|EEC11676.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
Length = 411
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 140/293 (47%), Gaps = 35/293 (11%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFN 89
+L +L L + D + IA L +DL G S+V+++GL+ + NL+SL+
Sbjct: 123 SLSELNLSMCKQITDNSLGRIAQHLKGLERLDLGGCSNVSNTGLLLVAWGLKNLRSLNLR 182
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C +SD G+ HL G++ +A G + L L L+ C ++ +
Sbjct: 183 SCRGVSDPGIGHLAGMTP-----------------EAAHGTLRLEALCLQDCQKLTDDAL 225
Query: 150 NLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQK 205
GL L SLN+ +C +TD+ +K + + L+ L + SC ++D G+AYL +G +
Sbjct: 226 RFVSLGLADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAEGGSR 285
Query: 206 LTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-F 261
L L++ C L + L L L+LN C +SDDG + ++ +G L L+LG
Sbjct: 286 LCALDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVARSLGDLHTLHLGQC 345
Query: 262 NEITDECLV----HLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF 309
+TD+ L HLK L ++L C I GL L L +L +NL
Sbjct: 346 GRVTDKGLSLIADHLK---QLRCIDLYGCTKITTVGLERLMQLPHLGVLNLGL 395
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 162/322 (50%), Gaps = 39/322 (12%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ LE+LN+ C +TD+ + + + +L L +S C ++TD+ + +LKGL
Sbjct: 91 IQGVPNLEALNMIGCFNLTDTWLSHAFVQDVHSLSELNLSMCKQITDNSLGRIAQHLKGL 150
Query: 204 QKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG 260
++ L+L GC + L A G +L LNL C+ +SD G IG L
Sbjct: 151 ER---LDLGGCSNVSNTGLLLVAWGLKNLRSLNLRSCRGVSDPG------IGHLA----- 196
Query: 261 FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLTNLESINLSF-TGISDGSL 317
+T E G LE+L L C + D+ L ++ GL +L S+NLSF ++D L
Sbjct: 197 --GMTPEA---AHGTLRLEALCLQDCQKLTDDALRFVSLGLADLRSLNLSFCASVTDAGL 251
Query: 318 RKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYL-RNFKN 373
+ A + L+ LNL + I+D GLA L + L LD+ F ++ D G + +
Sbjct: 252 KHAARMPRLRELNLRSCDNISDLGLAYLAEGGSRLCALDVSFCDKVGDQGLLHASQGLFQ 311
Query: 374 LRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN- 430
LRSL + ++D G+ + + L L L+L Q +TDK L LI+ L L +++
Sbjct: 312 LRSLSLNACPVSDDGIGRVARSLGDLHTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGC 371
Query: 431 SRITSAGLRHLKPLKNLRSLTL 452
++IT+ GL L L +L L L
Sbjct: 372 TKITTVGLERLMQLPHLGVLNL 393
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLE 139
++L+SL+ +FC ++D GL+H + L L+ R + I+ G+ A G L LD+
Sbjct: 233 ADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAEGGSRLCALDVS 292
Query: 140 RCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSG 196
C ++ G L +GL +L SL++ C D + L +L +L + C +VTD G
Sbjct: 293 FCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVARSLGDLHTLHLGQCGRVTDKG 352
Query: 197 IAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
++ + L++L ++L GC +T L+ L L L LNL Q
Sbjct: 353 LSLIADHLKQLRCIDLYGCTKITTVGLERLMQLPHLGVLNLGLWQ 397
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 96/182 (52%), Gaps = 22/182 (12%)
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-LT 348
+G+ NL L + NL+ T +S ++ + SL LNL +QITD L + L
Sbjct: 92 QGVPNLEALNMIGCFNLTDTWLSHAFVQDV---HSLSELNLSMCKQITDNSLGRIAQHLK 148
Query: 349 GLTHLDLFG-ARITDSG---AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS------S 397
GL LDL G + ++++G A+ KNLRSL + G++D G+ H+ ++ +
Sbjct: 149 GLERLDLGGCSNVSNTGLLLVAW--GLKNLRSLNLRSCRGVSDPGIGHLAGMTPEAAHGT 206
Query: 398 LTLLNLS-QNCN-LTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 453
L L L Q+C LTD L +S GL L SLN+S + +T AGL+H + LR L L
Sbjct: 207 LRLEALCLQDCQKLTDDALRFVSLGLADLRSLNLSFCASVTDAGLKHAARMPRLRELNLR 266
Query: 454 SC 455
SC
Sbjct: 267 SC 268
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 136/300 (45%), Gaps = 70/300 (23%)
Query: 176 LSGLTNLKSL-QISCSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSA-LGSL 230
+ G+ NL++L I C +TD+ + A+++ + L+ LNL C +T L ++ L L
Sbjct: 91 IQGVPNLEALNMIGCFNLTDTWLSHAFVQDVHSLSELNLSMCKQITDNSLGRIAQHLKGL 150
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIG 289
L+L GC S G L V GL NL SLNL SC G+
Sbjct: 151 ERLDLG-------GCSNVSNTGLLLVA---------------WGLKNLRSLNLRSCRGVS 188
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLT 348
D G+ +L G+T + G+LR L++L L D +++TD L
Sbjct: 189 DPGIGHLAGMT---------PEAAHGTLR-------LEALCLQDCQKLTDDAL------- 225
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
R G A LR+ +L C +TDAG+KH + L LNL N
Sbjct: 226 ----------RFVSLGLADLRSL----NLSFCAS-VTDAGLKHAARMPRLRELNLRSCDN 270
Query: 409 LTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
++D L L G + L +L+VS ++ GL H + L LRSL+L +C V+ + I R+
Sbjct: 271 ISDLGLAYLAEGGSRLCALDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRV 330
>gi|290994554|ref|XP_002679897.1| leucine rich repeat domain protein [Naegleria gruberi]
gi|284093515|gb|EFC47153.1| leucine rich repeat domain protein [Naegleria gruberi]
Length = 331
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 134/290 (46%), Gaps = 10/290 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQS---LDFNFCIQISDGGLE 100
++ ++++VI + LS++ ++TDS ++ L+S L F ++ D
Sbjct: 46 ISKQFLNVINERAK--LSIEFK--NITDSKFNAVRKSQFLESFTSLKFISVEEVFDIKYL 101
Query: 101 HLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
L GL NLT L N I QG K + L L ++ G + G+ KL
Sbjct: 102 ELVGLMRNLTKLCVG-GNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTE 160
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L+I N + K +SG+ +L L IS S + GI + ++ LT L++ G + A
Sbjct: 161 LDIS-ANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEMKNLTKLDICGNNLGAE 219
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
S+S + L YL L +G S++ L LN+ +NEI DE + + NL
Sbjct: 220 GAKSISQMKQLTYLKAYTNSLRSEGAIFISELDKLTTLNICYNEIGDEGAKAISQMPNLT 279
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L +D IG EG +++ + L +++SF I + ++ + G+ L L
Sbjct: 280 DLRIDGNRIGPEGAKSISEMKQLRLLDISFNRIGEEGVKYVKGMKHLTRL 329
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 98/204 (48%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S L SL I S++ G + G+ KLT L++ + A S+S + L +L
Sbjct: 126 KIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDISANYLCAEGAKSISGMDHLTFL 185
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N++ + +G + S++ +L L++ N + E + + L L + + EG
Sbjct: 186 NISSSNIDQEGIKSISEMKNLTKLDICGNNLGAEGAKSISQMKQLTYLKAYTNSLRSEGA 245
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ ++ L L ++N+ + I D + ++ + +L L +D +I G +++ + L L
Sbjct: 246 IFISELDKLTTLNICYNEIGDEGAKAISQMPNLTDLRIDGNRIGPEGAKSISEMKQLRLL 305
Query: 354 DLFGARITDSGAAYLRNFKNLRSL 377
D+ RI + G Y++ K+L L
Sbjct: 306 DISFNRIGEEGVKYVKGMKHLTRL 329
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 32/296 (10%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ----ISCS 190
K L +C+ I +N+ + + L+I++ N ITDS + L+S IS
Sbjct: 37 KFILYKCSLISKQFLNV--INERAKLSIEFKN-ITDSKFNAVRKSQFLESFTSLKFISVE 93
Query: 191 KVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+V D L GL + LT L + G + +S L L ++ Q+ +G + S
Sbjct: 94 EVFDIKYLELVGLMRNLTKLCVGGNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLIS 153
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN--- 306
+ L L++ N + E + G+ +L LN+ S I EG+ +++ + NL ++
Sbjct: 154 GMTKLTELDISANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEMKNLTKLDICG 213
Query: 307 ----------------LSFTGISDGSLRK-----LAGLSSLKSLNLDARQITDTGLAALT 345
L++ SLR ++ L L +LN+ +I D G A++
Sbjct: 214 NNLGAEGAKSISQMKQLTYLKAYTNSLRSEGAIFISELDKLTTLNICYNEIGDEGAKAIS 273
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
+ LT L + G RI GA + K LR L+I + + GVK++K + LT L
Sbjct: 274 QMPNLTDLRIDGNRIGPEGAKSISEMKQLRLLDISFNRIGEEGVKYVKGMKHLTRL 329
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 305 INLSFTGISDG---SLRKLAGLSSLKSLN-LDARQITDTGLAALTSLT-GLTHLDLFGAR 359
+++ F I+D ++RK L S SL + ++ D L L LT L + G
Sbjct: 60 LSIEFKNITDSKFNAVRKSQFLESFTSLKFISVEEVFDIKYLELVGLMRNLTKLCVGGNE 119
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
I GA + FK L SL I + G K I ++ LT L++S N L + + ISG
Sbjct: 120 IGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDISANY-LCAEGAKSISG 178
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ L LN+S+S I G++ + +KNL L +
Sbjct: 179 MDHLTFLNISSSNIDQEGIKSISEMKNLTKLDI 211
>gi|27574254|pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
gi|27574256|pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
gi|27574257|pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
gi|27574258|pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 68 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 121
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 122 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 173
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 174 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 226
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 227 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 282
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 283 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 332
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 333 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 371
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 63 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 115
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 116 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 168
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 169 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 224
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 225 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 278
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 279 ----NISPLAGLTALT 290
>gi|255028812|ref|ZP_05300763.1| internalin A [Listeria monocytogenes LO28]
Length = 502
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 90 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 143
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 195
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 196 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 248
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 249 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 304
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 305 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 354
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 355 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 393
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 85 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 137
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 138 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 190
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 191 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 246
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 247 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 300
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 301 ----NISPLAGLTALT 312
>gi|150371828|dbj|BAF65703.1| internalin A [Listeria monocytogenes]
Length = 526
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|395738814|ref|XP_003777155.1| PREDICTED: F-box/LRR-repeat protein 13 [Pongo abelii]
Length = 735
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 118/429 (27%), Positives = 195/429 (45%), Gaps = 70/429 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + P D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 247 LQELNVSDCPTFTDESMRHISEGCPGVLYLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 306
Query: 92 IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG + A G+++L
Sbjct: 307 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGVMHLTINDMPTLTDN 366
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK +E+C+RI H K L KL + + +TD+ K +
Sbjct: 367 CVKALVEKCSRITSLVFTGAPHITDCTFKALSTCKLRKIRFEGNKRVTDASFKSVDKNYP 426
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVT-----AACLDSLSALGSLFYLN 234
NL + ++ C +TDS + L L++LT+LNL C LD +++ + LN
Sbjct: 427 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRIGDMGLKQFLDGPASI-KIRELN 485
Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
L+ C QLSD K S + C NL L+L +C + +G
Sbjct: 486 LSNCVQLSDASVMKLS----------------ERC-------PNLNYLSLRNCEHLTAQG 522
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGL 350
+ + + +L SI+LS T IS+ L L+ LK L++ + +ITD G+ A S L
Sbjct: 523 IGYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSVIL 582
Query: 351 THLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQN 406
HLD+ + ++++D L + NL SL I G +TD+ ++ + L +L++S
Sbjct: 583 EHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGC 642
Query: 407 CNLTDKTLE 415
LTD+ LE
Sbjct: 643 VLLTDQILE 651
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 8/187 (4%)
Query: 83 LQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
++ L+ + C+Q+SD + L NL LS R +TAQG+ + +LV +DL
Sbjct: 481 IRELNLSNCVQLSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGT 540
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAY 199
+ GL L KL+ L++ C ITD ++ L+ L +S CS+++D I
Sbjct: 541 DISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSVILEHLDVSYCSQLSDMIIKA 600
Query: 200 LK-GLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIG--SL 254
L LT L++ GCP +T + ++ LSA L L+++ C L D + +IG L
Sbjct: 601 LAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGCVLLTDQILEDLQIGCKQL 660
Query: 255 KVLNLGF 261
++L + +
Sbjct: 661 RILKMQY 667
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+DLSG+D+++ GL L L+ L + C +I+D G++ +F +++
Sbjct: 531 SLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQ-----------AFCKSS 579
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKP 175
I L LD+ C+++ ++ + + L SL+I C ITDS M+
Sbjct: 580 VI-------------LEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEM 626
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + L L IS C +TD + L+ G ++L +L ++ C
Sbjct: 627 LSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYC 668
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 133/286 (46%), Gaps = 25/286 (8%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGFNEITD 266
LN GC + S+S +L LN++ C +D+ S+ + LNL IT+
Sbjct: 226 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLYLNLSNTTITN 285
Query: 267 ECLVHL-KGLTNLESLNLDSC-GIGDEGLVNL---TGLTNLESINLS-FTGISDGSLRKL 320
+ L + NL++L+L C D+GL L G L ++LS T IS R +
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 321 A----GLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGA-RITDSGAAYLRNFKNL 374
A G+ L ++N D +TD + AL + +T L GA ITD L K L
Sbjct: 346 ANSCTGVMHL-TIN-DMPTLTDNCVKALVEKCSRITSLVFTGAPHITDCTFKALSTCK-L 402
Query: 375 RSLEICGGG-LTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS- 431
R + G +TDA K + K+ +L+ + ++ +TD +L +S L L LN++N
Sbjct: 403 RKIRFEGNKRVTDASFKSVDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCV 462
Query: 432 RITSAGLRHL--KPLK-NLRSLTLESC-KVTANDIKRLQSRDLPNL 473
RI GL+ P +R L L +C +++ + +L R PNL
Sbjct: 463 RIGDMGLKQFLDGPASIKIRELNLSNCVQLSDASVMKLSER-CPNL 507
>gi|313485040|gb|ADR52996.1| InlA [Listeria monocytogenes]
Length = 491
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|223698871|gb|ACN19154.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 316
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|119487242|ref|ZP_01620993.1| Rab family protein [Lyngbya sp. PCC 8106]
gi|119455797|gb|EAW36932.1| Rab family protein [Lyngbya sp. PCC 8106]
Length = 282
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 102/190 (53%), Gaps = 14/190 (7%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD++PLS T L L + + +TD +A L L +L +L + G V L LS++ L
Sbjct: 92 SDLRPLSSFTRLNRLILHKNNITD--LAPLTTLPELKILYVAGNQVED--LKPLSSMSGL 147
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L L ++SD S + +LK+L LGFN+++D L L LTNL L+L I D
Sbjct: 148 TELVLQTNKISD--ISPLSSLTNLKLLYLGFNQVSD--LKPLSSLTNLTELSLPGNKISD 203
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+ L+ LTN+ +NLS ISD LR L L+ L LNL+ +++ + LT+L L
Sbjct: 204 --ISPLSSLTNVTELNLSSNQISD--LRPLQPLTQLSELNLNGNNVSN--IIPLTTLPNL 257
Query: 351 THLDLFGARI 360
T + LF +
Sbjct: 258 TEIYLFNNPV 267
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 92/192 (47%), Gaps = 16/192 (8%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
T C D+ + LG LNL +SD S L L L N ITD L L
Sbjct: 67 ATQNCQDAEAVLGFASSLNLTATGISD--LRPLSSFTRLNRLILHKNNITD-----LAPL 119
Query: 276 TNLESLN-LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
T L L L G E L L+ ++ L + L ISD + L+ L++LK L L
Sbjct: 120 TTLPELKILYVAGNQVEDLKPLSSMSGLTELVLQTNKISD--ISPLSSLTNLKLLYLGFN 177
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
Q++D L L+SLT LT L L G +I+D + L + N+ L + ++D ++ ++
Sbjct: 178 QVSD--LKPLSSLTNLTELSLPGNKISD--ISPLSSLTNVTELNLSSNQISD--LRPLQP 231
Query: 395 LSSLTLLNLSQN 406
L+ L+ LNL+ N
Sbjct: 232 LTQLSELNLNGN 243
>gi|398024920|ref|XP_003865621.1| hypothetical protein, conserved [Leishmania donovani]
gi|322503858|emb|CBZ38944.1| hypothetical protein, conserved [Leishmania donovani]
Length = 1208
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 138/290 (47%), Gaps = 33/290 (11%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
SG+ L L++L L++ P+ L +L+ SL + L+RC+ E ++ L
Sbjct: 422 SGVRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECIILHRCR-GVRSLEPLRRLEHL 480
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGL--------TNLES 304
+ L+L +TD L+ L G T L L LD C I D L NL G T L +
Sbjct: 481 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRGTLERLLMPRTLLSN 540
Query: 305 INLSFTGISDG-------SLRKLAG------LSSLKSLNLDARQITDTGLAALTSLTGLT 351
N+ G+ D SLR+L L++L+ LNL +TD G +AL + L
Sbjct: 541 ANMHHIGLCDKLVELHLQSLRQLTDIGVLKDLTALRVLNLSDNLVTDEGCSALHCMPSLQ 600
Query: 352 HLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L+L R IT AA+ R L SL++ ++DAGV +++ + L LNL C
Sbjct: 601 RLNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQECTDLRYLNL---C 657
Query: 408 NLTD-KTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESC 455
++ + L + ++ L LN+ +R+T R+L +NLR L+L C
Sbjct: 658 GCSELRRLSWLQKMSSLRWLNLGGTRVTDEETKRYLPCTRNLRFLSLSGC 707
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 125/302 (41%), Gaps = 55/302 (18%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRG-----------LS 106
L S+ L G VTD+ L+ L C+ L+ L + C QI+D L +LRG LS
Sbjct: 480 LQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRGTLERLLMPRTLLS 539
Query: 107 N-----------LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
N L L + +T G+ L L L+L G L +
Sbjct: 540 NANMHHIGLCDKLVELHLQSLRQLTDIGV--LKDLTALRVLNLSDNLVTDEGCSALHCMP 597
Query: 156 KLESLNIKWCNCITD-SDMKPLSG--LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L+ LN+ C CIT + SG + L SL +S + ++D+G+ ++ L LNL
Sbjct: 598 SLQRLNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQECTDLRYLNLC 657
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVH 271
GC S L L +L K+ SL+ LNLG +TD E +
Sbjct: 658 GC----------SELRRLSWLQ---------------KMSSLRWLNLGGTRVTDEETKRY 692
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L NL L+L C L L LE +NL T ++D L L L+ L+L
Sbjct: 693 LPCTRNLRFLSLSGCS-SVRSLFFAVKLPQLEYLNLESTSVADSELACLCHCRKLRYLSL 751
Query: 332 DA 333
++
Sbjct: 752 ES 753
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 141/300 (47%), Gaps = 14/300 (4%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL-GSLF 231
++PL L +L+SL + VTD+ + L G +L L L+ C L L+ L G+L
Sbjct: 471 LEPLRRLEHLQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD-LSFLANLRGTLE 529
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L + R LS+ L L+L ++TD + LK LT L LNL + D
Sbjct: 530 RLLMPRTLLSNANMHHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTD 587
Query: 291 EGLVNLTGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
EG L + +L+ +NL+ T ++ + L SL++ I+D G+ +
Sbjct: 588 EGCSALHCMPSLQRLNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQE 647
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK-HIKDLSSLTLLNLSQ 405
T L +L+L G ++L+ +LR L + G +TD K ++ +L L+LS
Sbjct: 648 CTDLRYLNLCGCSELRR-LSWLQKMSSLRWLNLGGTRVTDEETKRYLPCTRNLRFLSLS- 705
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
C+ + ++L L L LN+ ++ + + L L + LR L+LESC V D+ L
Sbjct: 706 GCS-SVRSLFFAVKLPQLEYLNLESTSVADSELACLCHCRKLRYLSLESC-VDIRDVSPL 763
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 9/188 (4%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLN 330
L L L L++ + + L LT ++LE I L G+ SL L L L+SL+
Sbjct: 427 LGSLKQLRCLHILHTPLHETFLQALTTCSSLECIILHRCRGVR--SLEPLRRLEHLQSLS 484
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK-NLRSLEICGGGLTDAG 388
L +TDT L +LT T L L L R ITD ++L N + L L + L++A
Sbjct: 485 LHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD--LSFLANLRGTLERLLMPRTLLSNAN 542
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
+ HI L L+L LTD + ++ LT L LN+S++ +T G L + +L+
Sbjct: 543 MHHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTDEGCSALHCMPSLQ 600
Query: 449 SLTLESCK 456
L L SC+
Sbjct: 601 RLNLASCR 608
>gi|294358393|gb|ADE73849.1| InlA [Listeria monocytogenes]
Length = 800
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL + G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKEIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L + G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKEIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|145687803|gb|ABP88874.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687809|gb|ABP88877.1| truncated internalin A precursor [Listeria monocytogenes]
gi|194326155|emb|CAQ77236.1| internalin A [Listeria monocytogenes]
gi|294358379|gb|ADE73842.1| truncated InlA [Listeria monocytogenes]
gi|294358381|gb|ADE73843.1| truncated InlA [Listeria monocytogenes]
gi|294358383|gb|ADE73844.1| truncated InlA [Listeria monocytogenes]
gi|294358385|gb|ADE73845.1| truncated InlA [Listeria monocytogenes]
gi|298359890|gb|ADI77524.1| truncated internalin A [Listeria monocytogenes]
gi|298359938|gb|ADI77548.1| truncated internalin A [Listeria monocytogenes]
gi|298359960|gb|ADI77559.1| truncated internalin A [Listeria monocytogenes]
gi|298360012|gb|ADI77585.1| truncated internalin A [Listeria monocytogenes]
gi|371942072|gb|AEX60848.1| truncated internaline [Listeria monocytogenes]
gi|371942094|gb|AEX60859.1| truncated internaline [Listeria monocytogenes]
gi|371942120|gb|AEX60872.1| truncated internaline [Listeria monocytogenes]
gi|371942130|gb|AEX60877.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|223698748|gb|ACN19072.1| truncated internalin A [Listeria monocytogenes]
gi|223698961|gb|ACN19214.1| truncated internalin A [Listeria monocytogenes]
Length = 491
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 316
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|219821381|gb|ACL37832.1| internalin A [Listeria monocytogenes]
gi|219821384|gb|ACL37834.1| internalin A [Listeria monocytogenes]
Length = 741
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 343
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKLSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|219821354|gb|ACL37814.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
+ LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 IAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251
Query: 436 ----AGLRHL-------------KPLKNLRSLT 451
AGL L P+ NL++LT
Sbjct: 252 ISPIAGLTALTNLELNENQLEDISPISNLKNLT 284
>gi|71650734|ref|XP_814059.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878999|gb|EAN92208.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 934
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 123/483 (25%), Positives = 210/483 (43%), Gaps = 81/483 (16%)
Query: 31 CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
CAL+DL L Y V ++ M S+ + L + L G +S L L+ + L+ LD +
Sbjct: 371 CALRDLDLS-YTQVTEEGMYRDVSKLNKLSRLSLEGCRKIES-LQWLRALNQLRVLDLGY 428
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI--NLVKLDLERCTRIHGGL 148
++D L LR L L + IT+ +K G + +L +L+L + GL
Sbjct: 429 S-SVTDDSLTALRFCPELAKLDLQWCGRITS--LKCLVGALCDSLRELNLTETSVTDEGL 485
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
V LK LE ++++ C ++D ++ L LT L+ + + ++VT+ G+ L Q L +
Sbjct: 486 VPLKYFAALEWISLEGCGAVSDVNV--LCNLTRLREVDVGRTRVTNRGVVSLSQCQALRV 543
Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITD 266
+ + C +T A L AL L ++L+ C ++++G + SL+ L L + ++D
Sbjct: 544 MRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAELFGARSLRKLRLQSCHAVSD 601
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG---L 323
+ L GL +L L+L + +EG V L L + L + SL++ L
Sbjct: 602 --VNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQL--MTLIMHSVLVHSLQQWNTALFL 657
Query: 324 SSLKSLNLDARQITDTGLAALT--------SLTG---LTHLDLF------GA-------- 358
LK L+L ++T L+ + SL G +THLD GA
Sbjct: 658 PRLKRLDLSTTKVTSDALSFVRMCPILETLSLRGCKNITHLDFLILQPSSGAGVCAIVPR 717
Query: 359 ----------------------------------RITDSGAAYLRNFKNLRSLEICGGGL 384
I + AA + + LR L + G+
Sbjct: 718 DAEPHDTVGDTIAGKEKNPDDGPSPIETMTINDGVIKSTAAAAVVDRHRLRELTLSDTGV 777
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
TD G++ ++ L L L+ N+TD + ++ L+ L L++S + +T +GL L P
Sbjct: 778 TDDGLRALQYCPGLERLRLAHCKNVTD--VAVLRWLSQLKELDLSATGVTGSGLAKLSPS 835
Query: 445 KNL 447
NL
Sbjct: 836 GNL 838
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 122/283 (43%), Gaps = 52/283 (18%)
Query: 179 LTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L L+ L +S ++VT+ G+ + L KL+ L+LEGC + SL +L
Sbjct: 370 LCALRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGC----------RKIESLQWLR--- 416
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ L+VL+LG++ +TD+ L L+ L L+L CG
Sbjct: 417 ------------ALNQLRVLDLGYSSVTDDSLTALRFCPELAKLDLQWCG---------- 454
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
+ S+ + D SL+ LNL +TD GL L L + L G
Sbjct: 455 ---RITSLKCLVGALCD----------SLRELNLTETSVTDEGLVPLKYFAALEWISLEG 501
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
S L N LR +++ +T+ GV + +L ++ + Q LTD + +
Sbjct: 502 CGAV-SDVNVLCNLTRLREVDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTDAS--FL 558
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L L +++S+ +T+ G+ L ++LR L L+SC ++
Sbjct: 559 GALQQLEEVDLSDCPVTNEGIAELFGARSLRKLRLQSCHAVSD 601
>gi|371942108|gb|AEX60866.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|224123030|ref|XP_002318976.1| predicted protein [Populus trichocarpa]
gi|222857352|gb|EEE94899.1| predicted protein [Populus trichocarpa]
Length = 646
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 127/438 (28%), Positives = 200/438 (45%), Gaps = 75/438 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSN-LQSLDFNF 90
L+DL + P VND + + + L +D+S D V+ GL L N L +D +
Sbjct: 228 LEDLAMVGCPLVNDVGLQFLENGCPLLQKIDVSRCDCVSSYGLSALIRGHNGLLQIDAGY 287
Query: 91 CI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK----AFAGLIN----LVKLDLERC 141
I + S +E ++ L NL NAI G + F + N L+++ L +C
Sbjct: 288 TISEFSANFVECMQELKNL--------NAIIIDGARVSDTVFQTISNNCRSLIEIGLSKC 339
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGI-AY 199
T G+ N++ M+ +SG NLK++ ++C + +TD+ I A
Sbjct: 340 T----GVTNMR-------------------IMQLVSGCVNLKTINLTCCRSITDAAISAI 376
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRC-QLSDDGCEKFSKIGSL 254
+ L L LE C + SL LGS L L+L C ++D G E+ S+ L
Sbjct: 377 ADSCRNLLCLKLESCNMITE--KSLEQLGSHCALLEDLDLTDCFGINDRGLERLSRCSRL 434
Query: 255 KVLNLGF-NEITDECLVHLKG-LTNLESLNLDSC-GIGDEGLVNL-TGLTNLESINLSF- 309
L LG I+D L ++ + L L+L C GIGD+GL L +G L +NLS+
Sbjct: 435 LCLKLGLCTNISDTGLFYIASNCSQLHELDLYRCMGIGDDGLAALSSGCKKLRKLNLSYC 494
Query: 310 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL-TSLTGLTHLDL-FGARITDSG-- 364
++D + L L L L L A +IT GL AL T LT+LDL ++ D+G
Sbjct: 495 IEVTDKGMESLGYLEVLSDLELRALDKITGVGLTALVTRCKRLTYLDLKHCKKVDDTGFW 554
Query: 365 --AAYLRNFKNLR---------SLEICGGGLT---DAGVKHIKDLSSLTLLNLSQNCNLT 410
A Y RN + + +L + G LT DA + H+++++ + C +
Sbjct: 555 ALAYYSRNLRQINLSYCSITDMALCMVMGNLTRLQDADLVHLRNVTVEGFDLALRACCVR 614
Query: 411 DKTLELISGLTGLVSLNV 428
K ++L++ L L+S V
Sbjct: 615 IKKVKLVAALGFLLSSEV 632
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 134/540 (24%), Positives = 212/540 (39%), Gaps = 137/540 (25%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGL-------EHLRGLSNLTSLSFRRNNAITAQGMK---- 125
LK+ +NL +LD + C I DG + +H NL L+ RR N + G++
Sbjct: 63 LKNYTNLLTLDLSVCPCIEDGTITLLLHRVDHSMWARNLKFLNLRRANGLKFAGLEMLVG 122
Query: 126 ----------------------AFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLN 161
A +G L +L +++C + GL + G +L L+
Sbjct: 123 ACKGLESVDVSYCRGFGDREAAAISGCGGLKELSMDKCLGVSDVGLAKIVVGCGRLVRLS 182
Query: 162 IKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAA 219
+KWC I+D ++ L LK L +S KVT + + L KL L + GCP V
Sbjct: 183 LKWCMEISDLGVELLCKKCLELKFLDVSYLKVTSDSLRSIAALPKLEDLAMVGCPLVNDV 242
Query: 220 CLDSLSALGSLFY-LNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF--NEITDECLVHLKG 274
L L L ++++RC +S G + L ++ G+ +E + + ++
Sbjct: 243 GLQFLENGCPLLQKIDVSRCDCVSSYGLSALIRGHNGLLQIDAGYTISEFSANFVECMQE 302
Query: 275 LTNLESLNLDSCGIGDE---------------GLVNLTGLT------------NLESINL 307
L NL ++ +D + D GL TG+T NL++INL
Sbjct: 303 LKNLNAIIIDGARVSDTVFQTISNNCRSLIEIGLSKCTGVTNMRIMQLVSGCVNLKTINL 362
Query: 308 ---------------------------SFTGISDGSLRKLAGLSS-LKSLNL-DARQITD 338
S I++ SL +L + L+ L+L D I D
Sbjct: 363 TCCRSITDAAISAIADSCRNLLCLKLESCNMITEKSLEQLGSHCALLEDLDLTDCFGIND 422
Query: 339 TGLAALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGG-GLTDAGVKHIKD- 394
GL L+ + L L L I+D+G Y+ N L L++ G+ D G+ +
Sbjct: 423 RGLERLSRCSRLLCLKLGLCTNISDTGLFYIASNCSQLHELDLYRCMGIGDDGLAALSSG 482
Query: 395 LSSLTLLNLSQNCNLTDK------TLELISGL----------TGLVSLNVSNSRITSAGL 438
L LNLS +TDK LE++S L GL +L R+T L
Sbjct: 483 CKKLRKLNLSYCIEVTDKGMESLGYLEVLSDLELRALDKITGVGLTALVTRCKRLTYLDL 542
Query: 439 RHLKPL------------KNLRSLTLESCKVT-------ANDIKRLQSRDLPNLVSFRPE 479
+H K + +NLR + L C +T ++ RLQ DL +L + E
Sbjct: 543 KHCKKVDDTGFWALAYYSRNLRQINLSYCSITDMALCMVMGNLTRLQDADLVHLRNVTVE 602
>gi|405757422|ref|YP_006686698.1| internalin A protein InlA, N-terminal part, partial [Listeria
monocytogenes SLCC2479]
gi|145687805|gb|ABP88875.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687811|gb|ABP88878.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687813|gb|ABP88879.1| truncated internalin A precursor [Listeria monocytogenes]
gi|167861890|gb|ACA05644.1| InlA [Listeria monocytogenes]
gi|167861942|gb|ACA05670.1| InlA [Listeria monocytogenes]
gi|167861986|gb|ACA05692.1| InlA [Listeria monocytogenes]
gi|194326143|emb|CAQ77230.1| internalin A [Listeria monocytogenes]
gi|298359794|gb|ADI77476.1| truncated internalin A [Listeria monocytogenes]
gi|298359982|gb|ADI77570.1| truncated internalin A [Listeria monocytogenes]
gi|298360074|gb|ADI77616.1| truncated internalin A [Listeria monocytogenes]
gi|298360136|gb|ADI77647.1| truncated internalin A [Listeria monocytogenes]
gi|298360184|gb|ADI77671.1| truncated internalin A [Listeria monocytogenes]
gi|298360286|gb|ADI77722.1| truncated internalin A [Listeria monocytogenes]
gi|298360300|gb|ADI77729.1| truncated internalin A [Listeria monocytogenes]
gi|298360306|gb|ADI77732.1| truncated internalin A [Listeria monocytogenes]
gi|298360344|gb|ADI77751.1| truncated internalin A [Listeria monocytogenes]
gi|298360352|gb|ADI77755.1| truncated internalin A [Listeria monocytogenes]
gi|298360358|gb|ADI77758.1| truncated internalin A [Listeria monocytogenes]
gi|298360602|gb|ADI77880.1| truncated internalin A [Listeria monocytogenes]
gi|298360636|gb|ADI77897.1| truncated internalin A [Listeria monocytogenes]
gi|371942098|gb|AEX60861.1| truncated internaline [Listeria monocytogenes]
gi|371942122|gb|AEX60873.1| truncated internaline [Listeria monocytogenes]
gi|404235304|emb|CBY56706.1| similar to internalin A protein InlA, N-terminal part [Listeria
monocytogenes SLCC2479]
Length = 576
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|298360020|gb|ADI77589.1| truncated internalin A [Listeria monocytogenes]
gi|298360528|gb|ADI77843.1| truncated internalin A [Listeria monocytogenes]
Length = 459
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|77548336|gb|ABA91133.1| Leucine Rich Repeat family protein, expressed [Oryza sativa
Japonica Group]
gi|218185096|gb|EEC67523.1| hypothetical protein OsI_34818 [Oryza sativa Indica Group]
Length = 677
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 119/429 (27%), Positives = 200/429 (46%), Gaps = 61/429 (14%)
Query: 69 VTDSGLIHL-KDCS-NLQSLDF-NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ D L L ++CS +LQ LD N+ G L ++ + NL L+ + +T
Sbjct: 250 IDDDALTSLDQECSKSLQVLDMSNYYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMSS 309
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMK-PLSGLTNLK 183
+F + L L L+ C + GL ++ K + L L++ C+ +TD+D+ + L NL
Sbjct: 310 SFEMIHKLQTLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLL 369
Query: 184 SLQISC-SKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC--- 238
L ++C K+TD +A + L L +E C + ++ L +G RC
Sbjct: 370 KLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSS--KGLQLIG-------RRCTHL 420
Query: 239 --------QLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHL-KGLTNLESLNLDSCG- 287
L D+G + S L L +G ITDE L H+ K +L ++L G
Sbjct: 421 EELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGA 480
Query: 288 IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAAL 344
I DEG+ ++ G LESINLS+ T ++D SLR L+ L +L + ++ GL+ +
Sbjct: 481 ISDEGVTHIAQGCPMLESINLSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEI 540
Query: 345 -TSLTGLTHLDLFGA-RITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
T L+ LD+ I D G +L F NLR + + +TD G L+
Sbjct: 541 ATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIG-----------LI 589
Query: 402 NLSQNCNLTDKTLELISGLT--GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
+LS C L + T+ ++G+T GL+ + + GLR +K + +S+ V +
Sbjct: 590 SLSSICGLQNMTIVHLAGVTPNGLI------AALMVCGLRKVKLHEAFKSM------VPS 637
Query: 460 NDIKRLQSR 468
+ +K +++R
Sbjct: 638 HMLKVVEAR 646
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 129/283 (45%), Gaps = 28/283 (9%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFN 89
+L++L L + GV D + + + +LL +D++ +TD L + C +L SL
Sbjct: 341 SLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRME 400
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGL 148
C +S GL+ + + + +G+KA +G L L + C RI GL
Sbjct: 401 SCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGL 460
Query: 149 VNL-KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQK 205
++ K L +++ I+D + ++ G L+S+ +S C+K+TD + L K
Sbjct: 461 RHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINLSYCTKLTDCSLRSLSKCIK 520
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L + GCP+ ++ LS + + GC SK+ K EI
Sbjct: 521 LNTLEIRGCPMVSS--AGLSEIAT--------------GCRLLSKLDIKKCF-----EIN 559
Query: 266 DECLVHLKGLT-NLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
D ++ L + NL +NL C + D GL++L+ + L+++ +
Sbjct: 560 DMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTI 602
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 113/403 (28%), Positives = 173/403 (42%), Gaps = 66/403 (16%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD GL + C +L+ L +CI ++ GL+ L +L + N
Sbjct: 174 ITDMGLGCIAVGCPDLRELSLKWCIGVTHLGLD-------LLALKCNKLNI--------- 217
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LDL + + L L+ L + CN I D + L + KSLQ+
Sbjct: 218 --------LDLSYTMIVKKCFPAIMKLQSLQVLLLVGCNGIDDDALTSLDQECS-KSLQV 268
Query: 188 ----SCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLS 241
+ VT G+ + +K + L LNL C PVT + S + L L L+ CQ
Sbjct: 269 LDMSNYYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMSSSFEMIHKLQTLKLDGCQFM 328
Query: 242 DDGCEKFSK-IGSLKVLNLG-FNEITDECLVH-LKGLTNLESLNLDSC-GIGDEGLVNLT 297
DDG + K SL+ L+L + +TD L + L NL L++ C I D L +T
Sbjct: 329 DDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAIT 388
Query: 298 GLTNLES-INLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-------------TGLAA 343
T+ S I+L S L S K L L R+ T GL A
Sbjct: 389 --TSCPSLISLRMESCS---------LVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKA 437
Query: 344 LTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGVKHI-KDLSSLT 399
L+ + L+ L + RITD G ++ ++ +LR +++ G ++D GV HI + L
Sbjct: 438 LSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLE 497
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 441
+NLS LTD +L +S L +L + ++SAGL +
Sbjct: 498 SINLSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEI 540
>gi|290980528|ref|XP_002672984.1| FBOX domain-containing protein [Naegleria gruberi]
gi|284086564|gb|EFC40240.1| FBOX domain-containing protein [Naegleria gruberi]
Length = 390
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 149/305 (48%), Gaps = 20/305 (6%)
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHG 146
FC +I G +E NL L +++ ++ + L L +L+++ C ++
Sbjct: 100 FC-EIGLGVMECFPYFENLQVLKLKKS-LLSDDNSYYVSKLKGLKRLEIDHCVLEPKVFS 157
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ ++ L +L+ L+ + N ++K L+ L +LK L++ ++ I L L
Sbjct: 158 YISQIQSLKELQ-LDKNYYN----GELKNLTRLKHLKLLELVNCELELKDINLLLEFGSL 212
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+ LNLE + + +S + +L +L LN ++ I SL+VL LGFNEI
Sbjct: 213 SHLNLELNKIGNLHAECISNMRTLTFLGLNNTNIT---------ILSLEVLYLGFNEIDA 263
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
E + +L + L++L L+ IG G V ++ LTNL +NL+ T ++D + ++ ++SL
Sbjct: 264 EGVEYLVKMKTLKTLILNDNPIGQLGAVLISKLTNLRELNLTNTCMNDKGVEYISKMASL 323
Query: 327 KSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
+ L + IT G L+ + L L + I D G +L N +L+ L+ G L+
Sbjct: 324 RDLQIGTNHMITKLGALYLSQMKNLQRLSVPATSINDQGVEFLVNLDSLQYLDARGLPLS 383
Query: 386 DAGVK 390
G++
Sbjct: 384 IRGLE 388
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 119/274 (43%), Gaps = 18/274 (6%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
E C + ++ +L L L + LSDD SK+ LK L + + + +
Sbjct: 99 EFCEIGLGVMECFPYFENLQVLKLKKSLLSDDNSYYVSKLKGLKRLEIDHCVLEPKVFSY 158
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+ + +L+ L LD E L NLT L +L+ + L + + L SL LNL
Sbjct: 159 ISQIQSLKELQLDKNYYNGE-LKNLTRLKHLKLLELVNCELELKDINLLLEFGSLSHLNL 217
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARIT---------------DSGAAYLRNFKNLRS 376
+ +I + ++++ LT L L IT G YL K L++
Sbjct: 218 ELNKIGNLHAECISNMRTLTFLGLNNTNITILSLEVLYLGFNEIDAEGVEYLVKMKTLKT 277
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNSRITS 435
L + + G I L++L LNL+ C + DK +E IS + L L + +N IT
Sbjct: 278 LILNDNPIGQLGAVLISKLTNLRELNLTNTC-MNDKGVEYISKMASLRDLQIGTNHMITK 336
Query: 436 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 469
G +L +KNL+ L++ + + ++ L + D
Sbjct: 337 LGALYLSQMKNLQRLSVPATSINDQGVEFLVNLD 370
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 129/278 (46%), Gaps = 10/278 (3%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
M+ NL+ L++ S ++D Y+ L+ L L ++ C + +S + SL
Sbjct: 108 MECFPYFENLQVLKLKKSLLSDDNSYYVSKLKGLKRLEIDHCVLEPKVFSYISQIQSLKE 167
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L++ + + + +++ LK+L L E+ + + L +L LNL+ IG+
Sbjct: 168 LQLDKNYYNGE-LKNLTRLKHLKLLELVNCELELKDINLLLEFGSLSHLNLELNKIGN-- 224
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
++ ++N+ + L+F G+++ ++ L SL+ L L +I G+ L + L
Sbjct: 225 -LHAECISNMRT--LTFLGLNNTNITIL----SLEVLYLGFNEIDAEGVEYLVKMKTLKT 277
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L L I GA + NLR L + + D GV++I ++SL L + N +T
Sbjct: 278 LILNDNPIGQLGAVLISKLTNLRELNLTNTCMNDKGVEYISKMASLRDLQIGTNHMITKL 337
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+S + L L+V + I G+ L L +L+ L
Sbjct: 338 GALYLSQMKNLQRLSVPATSINDQGVEFLVNLDSLQYL 375
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I G+E+L + L +L +N I G + L NL +L+L G+ +
Sbjct: 260 EIDAEGVEYLVKMKTLKTLILN-DNPIGQLGAVLISKLTNLRELNLTNTCMNDKGVEYIS 318
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ L L I + IT LS + NL+ L + + + D G+ +L L L L+
Sbjct: 319 KMASLRDLQIGTNHMITKLGALYLSQMKNLQRLSVPATSINDQGVEFLVNLDSLQYLDAR 378
Query: 213 GCPVTAACLDSL 224
G P++ L++L
Sbjct: 379 GLPLSIRGLETL 390
>gi|290974240|ref|XP_002669854.1| predicted protein [Naegleria gruberi]
gi|284083406|gb|EFC37110.1| predicted protein [Naegleria gruberi]
Length = 357
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 22/238 (9%)
Query: 189 CSKVTDSGIAYLK-----GLQKLTLLNLEGCPVTA--ACLDSLSALG------------- 228
C + + YL L++L L+ LE V A L+SLS +G
Sbjct: 89 CPYSFEEFVKYLDECQFDSLKRLNLIGLEVSNVVARFGSLESLSLIGMGAEIGNSIGNLS 148
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L YLNLN ++ + C+ K +K LNL N+I +E ++L L NL L L+ C I
Sbjct: 149 RLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNI 208
Query: 289 GDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
++G+ +L+ + L +N+S I D + L +L S L A + + +T+L
Sbjct: 209 SEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTS--LKAASCSVESIKNITNLI 266
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT L+L I + G + NL++L + V+++ LSS+ +L+L N
Sbjct: 267 KLTSLNLGQNSIDNEGVKIIGELTNLKTLTLENNVFQPEAVQYLTKLSSMEVLDLRDN 324
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 4/181 (2%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLN 234
+ L+ L L ++ S VT Y++ + + LNL + +CL L+ L +L L
Sbjct: 144 IGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCL-YLTKLKNLTILR 202
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L C +S+ G E S+I +L +LN+ N I D+ V++ L NL SL SC + E +
Sbjct: 203 LEDCNISEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTSLKAASCSV--ESIK 260
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
N+T L L S+NL I + ++ + L++LK+L L+ + LT L+ + LD
Sbjct: 261 NITNLIKLTSLNLGQNSIDNEGVKIIGELTNLKTLTLENNVFQPEAVQYLTKLSSMEVLD 320
Query: 355 L 355
L
Sbjct: 321 L 321
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 5/177 (2%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
LESL+L G+G E ++ L+ L +NL+ + ++ S + + +K+LNL +I
Sbjct: 128 LESLSL--IGMGAEIGNSIGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIG 185
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
+ LT L LT L L I++ G +L + L L + + D G +I L +
Sbjct: 186 NESCLYLTKLKNLTILRLEDCNISEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKN 245
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
LT L + +C++ ++++ I+ L L SLN+ + I + G++ + L NL++LTLE+
Sbjct: 246 LTSLK-AASCSV--ESIKNITNLIKLTSLNLGQNSIDNEGVKIIGELTNLKTLTLEN 299
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
++ +L+ LT+L+L + +T Y++ + +++L + + + ++ L +LT+L
Sbjct: 143 SIGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILR 202
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
L ++CN+++K +E +S + L LNVS +RI G ++ LKNL SL SC V +
Sbjct: 203 L-EDCNISEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTSLKAASCSVES 258
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 29/159 (18%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
+K+L +S +K+ + YL L+ LT+L LE C ++ ++ LS + +L LN+++ ++
Sbjct: 174 IKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNISEKGVEHLSQIETLTILNVSKNRIE 233
Query: 242 DDG----CEKFSKIGSLKV-------------------LNLGFNEITDECLVHLKGLTNL 278
DDG C K + SLK LNLG N I +E + + LTNL
Sbjct: 234 DDGFVNIC-KLKNLTSLKAASCSVESIKNITNLIKLTSLNLGQNSIDNEGVKIIGELTNL 292
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESI-----NLSFTGI 312
++L L++ E + LT L+++E + NLSF +
Sbjct: 293 KTLTLENNVFQPEAVQYLTKLSSMEVLDLRDNNLSFDNV 331
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+++LS + + + ++L NL L C IS+ G+EHL + LT L+ + N I
Sbjct: 176 NLNLSDNKIGNESCLYLTKLKNLTILRLEDC-NISEKGVEHLSQIETLTILNVSK-NRIE 233
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G L NL L C+ + N+ L+KL SLN+ N I + +K + LT
Sbjct: 234 DDGFVNICKLKNLTSLKAASCSV--ESIKNITNLIKLTSLNLGQ-NSIDNEGVKIIGELT 290
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
NLK+L + + + YL L + +L+L
Sbjct: 291 NLKTLTLENNVFQPEAVQYLTKLSSMEVLDL 321
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L+L G +++ A F +L SL + G G + G I +LS LT LNL+ + +
Sbjct: 107 SLKRLNLIGLEVSNVVAR----FGSLESLSLIGMG-AEIG-NSIGNLSRLTYLNLNAS-S 159
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T ++ + I + +LN+S+++I + +L LKNL L LE C ++ ++ L
Sbjct: 160 VTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNISEKGVEHL 216
>gi|428225640|ref|YP_007109737.1| hypothetical protein GEI7407_2206 [Geitlerinema sp. PCC 7407]
gi|427985541|gb|AFY66685.1| leucine-rich repeat-containing protein [Geitlerinema sp. PCC 7407]
Length = 504
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 157/341 (46%), Gaps = 68/341 (19%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
GL +L L+ L L + SD++PLS L NL++L +S + +TD + L L L
Sbjct: 85 GLTDLSPLVSLPQLTGLSLYNSSLSDLRPLSSLPNLRALDLSYANLTD--VTVLGTLGTL 142
Query: 207 TLLNLEGCPV--------------------TAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
LNL G PV T L +L L +L L+L+ Q+ D
Sbjct: 143 QALNLRGNPVRDLRPLQGLQRLHTLTLGWSTVTDLSTLPTLPNLHQLDLSGSQVGD--IR 200
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN 306
+ L+ LNL N I+ + L + +L SL+L++ + + G LES+N
Sbjct: 201 SLAPQPRLETLNLSANRISS---IALPAMPSLRSLDLENNALTRVTIPASMG--KLESLN 255
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
L+ I+ SL+ + +L+ L+L + Q+T+ + A+ S L LDL +ITD G
Sbjct: 256 LANNAIA--SLQFGGQIPALRRLSLASNQLTE--VRAIASQPQLQELDLSFNQITDLGP- 310
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L + +R L+I G + I DL L +GLT L +L
Sbjct: 311 -LASLGAIRVLKISGN-------RPISDLRPL-------------------AGLTTLQAL 343
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
++S A +R + PL+ LR+ LE+ ++ N I++L+S
Sbjct: 344 DLSE-----ASIRDITPLRGLRN--LETLVLSGNQIQQLES 377
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 136/322 (42%), Gaps = 86/322 (26%)
Query: 75 IHLKDCSNLQSLDFN------FCIQISDGGLEHLRGLSN-LTSLSF-------RR----N 116
I L +L+SLD I S G LE L +N + SL F RR +
Sbjct: 221 IALPAMPSLRSLDLENNALTRVTIPASMGKLESLNLANNAIASLQFGGQIPALRRLSLAS 280
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITDSDMKP 175
N +T ++A A L +LDL + +L L L ++ + K SD++P
Sbjct: 281 NQLTE--VRAIASQPQLQELDLS-----FNQITDLGPLASLGAIRVLKISGNRPISDLRP 333
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+GLT L++L +S + + D I L+GL+ L L L G + L+SLS L L YL +
Sbjct: 334 LAGLTTLQALDLSEASIRD--ITPLRGLRNLETLVLSGNQIQQ--LESLSGLNRLSYLAI 389
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
G N+I+D L + L +L++L LDS I
Sbjct: 390 ------------------------GGNQISD--LRAIAALYSLQTLMLDSNRIT------ 417
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
S+R LA L LK L L QITD A L +LTGLT L L
Sbjct: 418 --------------------SVRPLASLGQLKVLTLGNNQITDP--APLAALTGLTVLQL 455
Query: 356 FGARITDSGAAYLRNFKNLRSL 377
RIT+ A L NLR L
Sbjct: 456 PQNRITNFDA--LATLTNLRIL 475
>gi|334145937|ref|YP_004508864.1| leucine-rich protein [Porphyromonas gingivalis TDC60]
gi|333803091|dbj|BAK24298.1| leucine-rich protein [Porphyromonas gingivalis TDC60]
Length = 1384
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 140/418 (33%), Positives = 206/418 (49%), Gaps = 55/418 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FR 114
+SL +DLSG+ + + L L ++L LD +SD + L GL +LTSL+ +
Sbjct: 131 ASLTELDLSGNQI--AKLEGLNALTSLTRLD------LSDNQIAKLEGLDSLTSLTELYL 182
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I ++ L +L +LDL R +I L L L L LN+ N I ++
Sbjct: 183 SGNQIAK--LEGLDHLTSLTRLDL-RGNQI-AKLEGLDHLTSLTGLNLS-GNQI--RKLE 235
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L LT+L L +S +++ + + L L LT L L G + A L+ L+AL SL LN
Sbjct: 236 GLDSLTSLTELYLSGNQI--AKLEGLNALTSLTELYLSGNQI--AKLEGLNALTSLTGLN 291
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGL 293
L+ Q+S E + + SL LNL N+I L L LT+L L+L I EGL
Sbjct: 292 LSGNQIS--KLESLASLTSLTRLNLSDNQIAK--LEGLNALTSLTGLDLRGNQIAKLEGL 347
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGL 350
+LT LT L+ + +RKL GL SL S L+L QI + L +L +LT L
Sbjct: 348 DHLTSLTRLD--------LRGNQIRKLEGLDSLTSLTQLDLSGNQI--SKLESLNALTSL 397
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNL 409
T LDL +D+ A L + +L SL L+D + ++ L++LT L L N
Sbjct: 398 TELDL-----SDNQIATLESLASLTSL--TELDLSDNQIAKLEGLNALTSLTGLDLRGNQ 450
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
K LE + LT L L++ ++I R L+ L +L SLT ++ N I +L+S
Sbjct: 451 IAK-LEGLDHLTSLTRLDLRGNQI-----RKLEGLDSLTSLT--QLDLSGNQISKLES 500
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 139/428 (32%), Positives = 201/428 (46%), Gaps = 61/428 (14%)
Query: 57 SSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--F 113
+SL +DL G+ + GL HL + L +S + L GL +LTSL+ +
Sbjct: 197 TSLTRLDLRGNQIAKLEGLDHLTSLTGLN---------LSGNQIRKLEGLDSLTSLTELY 247
Query: 114 RRNNAITA-QGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGL-------MKLESL--- 160
N I +G+ A L L L + ++ G L +L GL KLESL
Sbjct: 248 LSGNQIAKLEGLNALTSLTELY-LSGNQIAKLEGLNALTSLTGLNLSGNQISKLESLASL 306
Query: 161 -NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT---LLNLEGCPV 216
++ N ++D+ + L GL L SL + + + IA L+GL LT L+L G +
Sbjct: 307 TSLTRLN-LSDNQIAKLEGLNALTSL--TGLDLRGNQIAKLEGLDHLTSLTRLDLRGNQI 363
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
L+ L +L SL L+L+ Q+S E + + SL L+L N+I L L LT
Sbjct: 364 RK--LEGLDSLTSLTQLDLSGNQIS--KLESLNALTSLTELDLSDNQIA--TLESLASLT 417
Query: 277 NLESLNLDSCGIGD-EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+L L+L I EGL LT LT L+ G L L L+SL L+L Q
Sbjct: 418 SLTELDLSDNQIAKLEGLNALTSLTGLD-----LRGNQIAKLEGLDHLTSLTRLDLRGNQ 472
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I L L SLT LT LDL G +I S L +L L++ + A ++ + L
Sbjct: 473 IR--KLEGLDSLTSLTQLDLSGNQI--SKLESLNALTSLTELDLSDNQI--ATLEGLNAL 526
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+SLT L+LS N LE ++ LT L L++S+++I A L LK L L+ L
Sbjct: 527 TSLTRLDLSDN---QIAKLESLASLTSLTRLDLSDNQI--AKLEGLKDLTQLQEL----- 576
Query: 456 KVTANDIK 463
V+ NDI+
Sbjct: 577 DVSGNDIQ 584
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 138/464 (29%), Positives = 195/464 (42%), Gaps = 102/464 (21%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSN 82
+ +E + + DL L G D W+D Q SS V+L G L D
Sbjct: 10 LDIEKTYNIDIPDLSL---QGEIDWWVDRYFKQDSSGAVVELRLRSCHIDGKAWLVDFPA 66
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER-C 141
L+ LD ++ GL+HL ++LT L N +G+ A L +L +LDL
Sbjct: 67 LKKLDLSYNQIRKFEGLDHL---ASLTELDLSGNQIAKLEGLNA---LTSLTRLDLSYNQ 120
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
R GL +L L +L+ ++ + + L GL L SL + ++D+ IA L+
Sbjct: 121 IRKFEGLDHLASLTELD---------LSGNQIAKLEGLNALTSL--TRLDLSDNQIAKLE 169
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
GL DSL++L L YL+ N+ E + SL L+L
Sbjct: 170 GL------------------DSLTSLTEL-YLSGNQIA----KLEGLDHLTSLTRLDLRG 206
Query: 262 NEITD-ECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLSFTGISDGSLRK 319
N+I E L HL LT LNL I EGL +LT LT L +G L
Sbjct: 207 NQIAKLEGLDHLTSLT---GLNLSGNQIRKLEGLDSLTSLTEL-----YLSGNQIAKLEG 258
Query: 320 LAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
L L+SL L L QI GL ALTSLTGL +L G +I
Sbjct: 259 LNALTSLTELYLSGNQIAKLEGLNALTSLTGL---NLSGNQI------------------ 297
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AG 437
+ ++ + L+SLT LNLS N LE ++ LT L L++ ++I G
Sbjct: 298 --------SKLESLASLTSLTRLNLSDN---QIAKLEGLNALTSLTGLDLRGNQIAKLEG 346
Query: 438 LRHL-------------KPLKNLRSLT-LESCKVTANDIKRLQS 467
L HL + L+ L SLT L ++ N I +L+S
Sbjct: 347 LDHLTSLTRLDLRGNQIRKLEGLDSLTSLTQLDLSGNQISKLES 390
>gi|290996873|ref|XP_002681006.1| predicted protein [Naegleria gruberi]
gi|284094629|gb|EFC48262.1| predicted protein [Naegleria gruberi]
Length = 207
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 25/232 (10%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT LN+ G + +S + L L+++R ++ +G + S++ L LN+ +N
Sbjct: 1 MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
EI E ++ + +L SLN+ IG EG + ++
Sbjct: 61 EIGVEGSKYISEMKHLTSLNIGDNEIGVEG------------------------SKYISE 96
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L SLN+ +I G ++ + LT L ++ I GA ++ K+L SL I G
Sbjct: 97 MKQLTSLNIADNEIGVEGSKFISEMKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGN 156
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
+ D G K I ++ SLT LN+ N + + + ISG+ L SLN+ ++ +
Sbjct: 157 QIGDEGSKFISEMKSLTSLNIGDN-EIGVEGAKFISGMKQLTSLNIDDNELV 207
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 96/201 (47%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I +++ G Y+ ++ LT L++ + +S + L LN+
Sbjct: 1 MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ +G + S++ L LN+G NEI E ++ + L SLN+ IG EG ++
Sbjct: 61 EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ +L S+ + + I + ++ + L SLN+ QI D G ++ + LT L++
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN 180
Query: 359 RITDSGAAYLRNFKNLRSLEI 379
I GA ++ K L SL I
Sbjct: 181 EIGVEGAKFISGMKQLTSLNI 201
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 26/233 (11%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LTSL+ N I +G K + + +L LD+ R
Sbjct: 1 MKQLTSLNIG-GNEIGVEGAKYMSEMKHLTSLDIHR------------------------ 35
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I K +S + +L SL I +++ G Y+ ++ LT LN+ + +
Sbjct: 36 -NEIGVEGSKFISEMKHLTSLNIYYNEIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYI 94
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L LN+ ++ +G + S++ L L + +NEI E + + +L SLN+
Sbjct: 95 SEMKQLTSLNIADNEIGVEGSKFISEMKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNIS 154
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
IGDEG ++ + +L S+N+ I + ++G+ L SLN+D ++
Sbjct: 155 GNQIGDEGSKFISEMKSLTSLNIGDNEIGVEGAKFISGMKQLTSLNIDDNELV 207
>gi|371942144|gb|AEX60884.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|291391263|ref|XP_002712147.1| PREDICTED: F-box and leucine-rich repeat protein 13 [Oryctolagus
cuniculus]
Length = 739
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 121/432 (28%), Positives = 208/432 (48%), Gaps = 35/432 (8%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + + D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 251 LQELNVSDCSTLTDELMRYISEGCPGVLYLNLSNTTITNRTMRLLPRHFYNLQNLSLAYC 310
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLVKLDL----ER 140
+ +D GL++L G L L I+ QG K A G+++L D+ +
Sbjct: 311 RKFTDKGLQYLSLGNGCHKLICLDLSGCTQISVQGFKNIANSCSGIMHLTINDMPTLTDN 370
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAY 199
C + LV + + S+ I+D K L+ NL+ ++ +K +TD+ +
Sbjct: 371 CVK---ALV--EKCPSITSVTFIGSPHISDCAFKALTA-CNLRKIRFEGNKRITDACFKF 424
Query: 200 L-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKF---SKIGS 253
+ K + + + C +T + L SL+ L L LNL C ++ D G + F
Sbjct: 425 IDKNYPNINHIYMSDCKGITDSSLKSLATLKQLTVLNLANCGRIGDMGIKHFLDGPVSQR 484
Query: 254 LKVLNLG-FNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFT 310
L+ LNL + D+ ++ L + NL L+L +C + D+G+ N+ + +L S++LS T
Sbjct: 485 LRELNLSNCVHLGDDSVLRLSERCPNLNYLSLRNCEHLTDQGIENIVNILSLVSVDLSGT 544
Query: 311 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGLTHLDL-FGARITDSGAAY 367
IS+ L L+ LK L+L D +ITD G+ A S L HLD+ + +++D
Sbjct: 545 IISNEGLMVLSRHKKLKELSLSDCGKITDVGIQAFCKSSRTLEHLDVSYCPQLSDDTIRA 604
Query: 368 LRNF-KNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDKTL-ELISGLTGL 423
L + NL SL + G +TDA ++ + L +L++S LTD+ L +L G L
Sbjct: 605 LAIYCVNLTSLSVAGCPKITDAAMEMLSAKCHYLHILDVSGCVLLTDQILADLRMGCRQL 664
Query: 424 VSLNVSNSRITS 435
SL + R+ S
Sbjct: 665 RSLKMLYCRLIS 676
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 96/407 (23%), Positives = 162/407 (39%), Gaps = 96/407 (23%)
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS------------- 177
+N+++L+ C L ++ L+ LN+ C+ +TD M+ +S
Sbjct: 225 LNVLRLNFRGCILRPRTLRSIGHCRNLQELNVSDCSTLTDELMRYISEGCPGVLYLNLSN 284
Query: 178 -------------GLTNLKSLQIS-CSKVTDSGIAYLK---GLQKLTLLNLEGC-PVTAA 219
NL++L ++ C K TD G+ YL G KL L+L GC ++
Sbjct: 285 TTITNRTMRLLPRHFYNLQNLSLAYCRKFTDKGLQYLSLGNGCHKLICLDLSGCTQISVQ 344
Query: 220 CLDSLS-ALGSLFYLNLNRCQLSDDGCEK-----------FSKIGSLKVLNLGF------ 261
+++ + + +L +N D C K + IGS + + F
Sbjct: 345 GFKNIANSCSGIMHLTINDMPTLTDNCVKALVEKCPSITSVTFIGSPHISDCAFKALTAC 404
Query: 262 ----------NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSF 309
ITD C + K N+ + + C GI D L +L L L +NL+
Sbjct: 405 NLRKIRFEGNKRITDACFKFIDKNYPNINHIYMSDCKGITDSSLKSLATLKQLTVLNLAN 464
Query: 310 TG-ISDGSLRK-LAGLSS--LKSLNL---------------------------DARQITD 338
G I D ++ L G S L+ LNL + +TD
Sbjct: 465 CGRIGDMGIKHFLDGPVSQRLRELNLSNCVHLGDDSVLRLSERCPNLNYLSLRNCEHLTD 524
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI-KDLS 396
G+ + ++ L +DL G I++ G L K L+ L + G +TD G++ K
Sbjct: 525 QGIENIVNILSLVSVDLSGTIISNEGLMVLSRHKKLKELSLSDCGKITDVGIQAFCKSSR 584
Query: 397 SLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHL 441
+L L++S L+D T+ ++ L SL+V+ +IT A + L
Sbjct: 585 TLEHLDVSYCPQLSDDTIRALAIYCVNLTSLSVAGCPKITDAAMEML 631
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 140/341 (41%), Gaps = 82/341 (24%)
Query: 21 TEVSLEAFRDCA-----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGL 74
T++S++ F++ A + L + P + D + + + S+ SV GS ++D
Sbjct: 339 TQISVQGFKNIANSCSGIMHLTINDMPTLTDNCVKALVEKCPSITSVTFIGSPHISDCAF 398
Query: 75 IHLKDCSNLQSLDF----------------NF----------CIQISDGGLEHLRGLSNL 108
L C NL+ + F N+ C I+D L+ L L L
Sbjct: 399 KALTAC-NLRKIRFEGNKRITDACFKFIDKNYPNINHIYMSDCKGITDSSLKSLATLKQL 457
Query: 109 TSLSFRRNNAITAQGMKAF-----------AGLINLVKLD-------LERCTRIH----- 145
T L+ I G+K F L N V L ERC ++
Sbjct: 458 TVLNLANCGRIGDMGIKHFLDGPVSQRLRELNLSNCVHLGDDSVLRLSERCPNLNYLSLR 517
Query: 146 -------GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI 197
G+ N+ ++ L S+++ I++ + LS LK L +S C K+TD GI
Sbjct: 518 NCEHLTDQGIENIVNILSLVSVDLSG-TIISNEGLMVLSRHKKLKELSLSDCGKITDVGI 576
Query: 198 -AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-------- 248
A+ K + L L++ CP + D++ AL +++ +NL LS GC K
Sbjct: 577 QAFCKSSRTLEHLDVSYCPQLSD--DTIRAL-AIYCVNLT--SLSVAGCPKITDAAMEML 631
Query: 249 -SKIGSLKVLNL-GFNEITDECLVHLK-GLTNLESLNLDSC 286
+K L +L++ G +TD+ L L+ G L SL + C
Sbjct: 632 SAKCHYLHILDVSGCVLLTDQILADLRMGCRQLRSLKMLYC 672
>gi|112959464|gb|ABI27259.1| internalin A [Listeria monocytogenes]
Length = 698
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 169/344 (49%), Gaps = 52/344 (15%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++ S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 INFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT- 53
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT
Sbjct: 54 -DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTT 106
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC 238
L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+LN
Sbjct: 107 LERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGN 159
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLT 297
QL D G + + +L L+L N+I++ L L GLT L L L + I + L LT
Sbjct: 160 QLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLT 215
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLTHLD 354
LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L L
Sbjct: 216 ALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLF 265
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+ +++D + L N N+ L AG I DL+ L
Sbjct: 266 FYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 299
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 111/217 (51%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+N Q++D + + +L L L N+ITD + LK LTNL L L S I D +
Sbjct: 25 MNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--IS 78
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 79 ALSGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 133
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 134 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 186
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 187 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 218
>gi|313485081|gb|ADR53011.1| InlA [Listeria monocytogenes]
Length = 800
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 150/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ + F G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQL---FFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|407424780|gb|EKF39143.1| hypothetical protein MOQ_000636 [Trypanosoma cruzi marinkellei]
Length = 936
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 102/450 (22%), Positives = 186/450 (41%), Gaps = 73/450 (16%)
Query: 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--------------- 91
+W+ + + L +DL S VTD L L+ C L LD +C
Sbjct: 415 QWLRAL----TQLRELDLGYSSVTDDSLTALRFCPELVRLDLQWCGRITSLKCLVGALCD 470
Query: 92 ---------IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
++D GL L+ + L +S A++ + L L ++D+ R
Sbjct: 471 SLRELNLTETSVTDEGLVPLKDFAALEWISLEGCGAVS--DVNVLCNLTRLREVDVGRTR 528
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+GG+++L L ++ ++ C +TD+ L L L+ + +S VT+ GIA L G
Sbjct: 529 VTNGGVLSLSQCQALRAMRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAALCG 586
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG------CEKFSK------ 250
+ L L L+ C + ++ L L L L+L+ + + G C + +
Sbjct: 587 ARSLRKLQLQSCHAVSD-VNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTLIMHSV 645
Query: 251 -------------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ LK L+L ++T + L L+ LE+L+L C N+T
Sbjct: 646 LVHSLQHWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSLRGCK-------NIT 698
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L L S G+ + +L + + D G + + ++T +
Sbjct: 699 HLDFLIIQTSSGVGVCGIAPHDAEPHDTLVDIIAGKEKNPDDGPSPIENMT------IND 752
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
I + AA + LR L + G+T+ G++ ++ L L L+ N+T+ + ++
Sbjct: 753 GAIKSTAAAPVVGRHRLRELTLSDTGVTNDGLRALQYCPGLERLRLAHCKNVTE--VAVL 810
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
L+ L L++S + +T +GL +L P NL
Sbjct: 811 RWLSQLKELDLSATGVTGSGLANLSPSGNL 840
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 159/351 (45%), Gaps = 25/351 (7%)
Query: 8 QQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
QQ+ + + TEV + A R+ L LG P K V LS+ +S S
Sbjct: 310 QQVSDVTPFLPHCTEVRVLALRNTHLTSEKLGLLP---QKCRHV------EQLSLCMSSS 360
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITAQGMKA 126
L H C+ L+ LD ++ Q+++ G+ + L L+ LS I +G++
Sbjct: 361 VSCTRFLRHRSLCA-LRDLDLSY-TQVTEEGMHRDVSRLKKLSRLSLEGCRKI--EGLQW 416
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL--TNLKS 184
L L +LDL + L L+ +L L+++WC IT +K L G +L+
Sbjct: 417 LRALTQLRELDLGYSSVTDDSLTALRFCPELVRLDLQWCGRIT--SLKCLVGALCDSLRE 474
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L ++ + VTD G+ LK L ++LEGC + ++ L L L +++ R ++++ G
Sbjct: 475 LNLTETSVTDEGLVPLKDFAALEWISLEGCGAVSD-VNVLCNLTRLREVDVGRTRVTNGG 533
Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
S+ +L+ + + +TD L L LE ++L C + +EG+ L G +L
Sbjct: 534 VLSLSQCQALRAMRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAALCGARSLR 591
Query: 304 SINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ L S +SD + L GL L L+L + + G L LT L
Sbjct: 592 KLQLQSCHAVSDVNF--LGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTL 640
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 160/343 (46%), Gaps = 37/343 (10%)
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY 199
CTR + + L L L++ + + + +S L L L + C K+ G+ +
Sbjct: 363 CTR----FLRHRSLCALRDLDLSYTQVTEEGMHRDVSRLKKLSRLSLEGCRKI--EGLQW 416
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLN 258
L+ L +L L+L VT L +L L L+L C +++ C + SL+ LN
Sbjct: 417 LRALTQLRELDLGYSSVTDDSLTALRFCPELVRLDLQWCGRITSLKCLVGALCDSLRELN 476
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLTNLESINLSFTGISDGSL 317
L +TDE LV LK LE ++L+ CG + VN L LT L +++ T +++G +
Sbjct: 477 LTETSVTDEGLVPLKDFAALEWISLEGCGAVSD--VNVLCNLTRLREVDVGRTRVTNGGV 534
Query: 318 RKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
L+ +L+++ + ++TD L +L L +DL +T+ G A L ++LR
Sbjct: 535 LSLSQCQALRAMRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAALCGARSLRK 592
Query: 377 LEICG-GGLTDA----GVKHIK--DLSSLTL-----LNLSQNCNLTDKTLE--LISG--- 419
L++ ++D G++H+ DL T+ + L+Q LT + L+
Sbjct: 593 LQLQSCHAVSDVNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTLIMHSVLVHSLQH 652
Query: 420 ------LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
L L L++S +++TS L L+ L +L+L CK
Sbjct: 653 WNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSLRGCK 695
>gi|386336010|ref|YP_006032180.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334198460|gb|AEG71644.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 1053
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 177/389 (45%), Gaps = 8/389 (2%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL L L+SLD + +I D ++ L ++LTSL+
Sbjct: 648 SVRRLDLSGCTGSAVSEAGLAVLARLP-LESLDLSGT-RIGDREVQALASSTSLTSLNLS 705
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSDM 173
N I G +A L L++ G+ L L SL ++ I ++ +
Sbjct: 706 -GNRIGDAGARALGRNTVLTALNVSANPIRDTGVQALADSRSLTSLELRGIGIGIGEASI 764
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+ T L+SL IS + +++ A L Q L L C +T L+ + SL L
Sbjct: 765 AALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNGMAQQLARIRSLRTL 824
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ + D G ++ SL+ LNL N IT + L L+ L SL++ G GD G
Sbjct: 825 EVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLCPLELSRTLTSLDVSGIGCGDRGA 884
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ L+ L S+ L F GI ++LA +L SL+L I AL + LT L
Sbjct: 885 LLLSKNRVLTSLKLGFNGIGSAGAQRLAANRTLISLDLRGNTIDVDAAKALANTGRLTSL 944
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
++ ++ D+ A+ L L SL++ L+ + + ++LT LN+S N D
Sbjct: 945 NVSDCKLDDAAASALAESLTLTSLDVSVNRLSGRAAQALAGNATLTSLNISHNHIGPDGA 1004
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLK 442
L + L L+ + I AG R L+
Sbjct: 1005 RALAESPS-LTVLDARANDIGEAGARALE 1032
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 152/355 (42%), Gaps = 31/355 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + D+G L + L +L+ + I D G++ L
Sbjct: 685 IGDREVQALASS-TSLTSLNLSGNRIGDAGARALGRNTVLTALNVS-ANPIRDTGVQALA 742
Query: 104 GLSNLTSLSFRRNN-AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+LTSL R I + A A L LD+ L L SL
Sbjct: 743 DSRSLTSLELRGIGIGIGEASIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKA 802
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
C +T+ + L+ + +L++L++ + + D+G+ + L LNL P+T L
Sbjct: 803 NACG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLC 861
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI---------TDECLVHL- 272
L +L L+++ D G SK L L LGFN I + L+ L
Sbjct: 862 PLELSRTLTSLDVSGIGCGDRGALLLSKNRVLTSLKLGFNGIGSAGAQRLAANRTLISLD 921
Query: 273 -----------KGLTN---LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
K L N L SLN+ C + D L L S+++S +S + +
Sbjct: 922 LRGNTIDVDAAKALANTGRLTSLNVSDCKLDDAAASALAESLTLTSLDVSVNRLSGRAAQ 981
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
LAG ++L SLN+ I G AL LT LD AR D G A R +N
Sbjct: 982 ALAGNATLTSLNISHNHIGPDGARALAESPSLTVLD---ARANDIGEAGARALEN 1033
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 98/247 (39%), Gaps = 40/247 (16%)
Query: 200 LKGLQKLTLLNLEGCPVT------AACLDSLSALGSLFYL--------NLNRCQLSDDGC 245
LKG LTL +L+ P T +AC S + G++ YL N+ + DDG
Sbjct: 113 LKG--NLTLTDLKALPATLRHLDLSACTGSAKSSGAIAYLAGLPLESLNVAGADIGDDGA 170
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG---LTNL 302
+ SLK LN I L L SL+L GIGDEG L G LTNL
Sbjct: 171 RLLAANPSLKTLNAANGGIGAAGARALAESPVLTSLDLTQNGIGDEGARALAGSRSLTNL 230
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNL------------------DARQITDTGLAAL 344
+N T D + LAG +L +L+L A +IT G AL
Sbjct: 231 AVLNCLVT---DVGAQALAGNRTLTALDLGNLITETDNELEQAGYDRTANEITAQGAWAL 287
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
LT L + G D G L + L SL + +T A + LT L++
Sbjct: 288 AQNRSLTSLSIQGNLCGDGGVQALARNRTLTSLNVAYTDMTPASATELARNPVLTSLSVR 347
Query: 405 QNCNLTD 411
N L D
Sbjct: 348 WNYGLGD 354
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 68/152 (44%), Gaps = 5/152 (3%)
Query: 268 CLVHLKGL-TNLESLNLDSC---GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
L LK L L L+L +C + L GL LES+N++ I D R LA
Sbjct: 118 TLTDLKALPATLRHLDLSACTGSAKSSGAIAYLAGLP-LESLNVAGADIGDDGARLLAAN 176
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
SLK+LN I G AL LT LDL I D GA L ++L +L +
Sbjct: 177 PSLKTLNAANGGIGAAGARALAESPVLTSLDLTQNGIGDEGARALAGSRSLTNLAVLNCL 236
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+TD G + + +LT L+L TD LE
Sbjct: 237 VTDVGAQALAGNRTLTALDLGNLITETDNELE 268
>gi|146104641|ref|XP_001469881.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134074251|emb|CAM72995.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 1208
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 138/290 (47%), Gaps = 33/290 (11%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
SG+ L L++L L++ P+ L +L+ SL + L+RC+ E ++ L
Sbjct: 422 SGVRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECILLHRCR-GVRSLEPLRRLEHL 480
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGL--------TNLES 304
+ L+L +TD L+ L G T L L LD C I D L NL G T L +
Sbjct: 481 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRGTLERLLMPRTLLSN 540
Query: 305 INLSFTGISDG-------SLRKLAG------LSSLKSLNLDARQITDTGLAALTSLTGLT 351
N+ G+ D SLR+L L++L+ LNL +TD G +AL + L
Sbjct: 541 ANMQHIGLCDKLVELHLQSLRQLTDIGVLKDLTALRVLNLSDNLVTDEGCSALHCMPSLQ 600
Query: 352 HLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L+L R IT AA+ R L SL++ ++DAGV +++ + L LNL C
Sbjct: 601 RLNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQECTDLRYLNL---C 657
Query: 408 NLTD-KTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESC 455
++ + L + ++ L LN+ +R+T R+L +NLR L+L C
Sbjct: 658 GCSELRRLSWLQKMSSLRWLNLGGTRVTDEETKRYLPCTRNLRFLSLSGC 707
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 127/303 (41%), Gaps = 57/303 (18%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNN 117
L S+ L G VTD+ L+ L C+ L+ L + C QI+D L +LRG L L R
Sbjct: 480 LQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPR-T 536
Query: 118 AITAQGMKAFAGLINLVKLDLE-----------------RCTRIHGGLVNLKG------L 154
++ M+ LV+L L+ R + LV +G +
Sbjct: 537 LLSNANMQHIGLCDKLVELHLQSLRQLTDIGVLKDLTALRVLNLSDNLVTDEGCSALHCM 596
Query: 155 MKLESLNIKWCNCITD-SDMKPLSG--LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L+ LN+ C CIT + SG + L SL +S + ++D+G+ ++ L LNL
Sbjct: 597 PSLQRLNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQECTDLRYLNL 656
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLV 270
GC S L L +L K+ SL+ LNLG +TD E
Sbjct: 657 CGC----------SELRRLSWLQ---------------KMSSLRWLNLGGTRVTDEETKR 691
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+L NL L+L C L L LE +NL T ++D L L L+ L+
Sbjct: 692 YLPCTRNLRFLSLSGCS-SVRSLFFAVKLPQLEYLNLESTSVADSELACLCHCRKLRYLS 750
Query: 331 LDA 333
L++
Sbjct: 751 LES 753
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 138/290 (47%), Gaps = 13/290 (4%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL-GSLF 231
++PL L +L+SL + VTD+ + L G +L L L+ C L L+ L G+L
Sbjct: 471 LEPLRRLEHLQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD-LSFLANLRGTLE 529
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L + R LS+ + L L+L ++TD + LK LT L LNL + D
Sbjct: 530 RLLMPRTLLSNANMQHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTD 587
Query: 291 EGLVNLTGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
EG L + +L+ +NL+ T ++ + L SL++ I+D G+ +
Sbjct: 588 EGCSALHCMPSLQRLNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQE 647
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK-HIKDLSSLTLLNLSQ 405
T L +L+L G ++L+ +LR L + G +TD K ++ +L L+LS
Sbjct: 648 CTDLRYLNLCGCSELRR-LSWLQKMSSLRWLNLGGTRVTDEETKRYLPCTRNLRFLSLS- 705
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
C+ + ++L L L LN+ ++ + + L L + LR L+LESC
Sbjct: 706 GCS-SVRSLFFAVKLPQLEYLNLESTSVADSELACLCHCRKLRYLSLESC 754
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLN 330
L L L L++ + + L LT ++LE I L G+ SL L L L+SL+
Sbjct: 427 LGSLKQLRCLHILHTPLHETFLQALTTCSSLECILLHRCRGVR--SLEPLRRLEHLQSLS 484
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK-NLRSLEICGGGLTDAG 388
L +TDT L +LT T L L L R ITD ++L N + L L + L++A
Sbjct: 485 LHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD--LSFLANLRGTLERLLMPRTLLSNAN 542
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
++HI L L+L LTD + ++ LT L LN+S++ +T G L + +L+
Sbjct: 543 MQHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTDEGCSALHCMPSLQ 600
Query: 449 SLTLESCK 456
L L SC+
Sbjct: 601 RLNLASCR 608
>gi|290973003|ref|XP_002669239.1| predicted protein [Naegleria gruberi]
gi|284082784|gb|EFC36495.1| predicted protein [Naegleria gruberi]
Length = 313
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 91/179 (50%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ + L L++ Q+ +G + S++ L LN+ +N+I + + + + L+SLN+
Sbjct: 122 INEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSLNI 181
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
IG EG+ ++ + L S+N+ I D ++ + + L SLN+ +I G
Sbjct: 182 IGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNRIGAEGAKL 241
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
++ + LT LD+ RI G ++R K L+SL I G + D K I ++ LT LN
Sbjct: 242 ISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIGDEEAKFISEMKQLTSLN 300
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 4/188 (2%)
Query: 243 DGCEKFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
D E+ I +K L ++G N+I E + + L SLN+ IG +G+ + +
Sbjct: 114 DSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEM 173
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
L+S+N+ I ++ ++ + L SLN+ QI D G+ + + LT L++ R
Sbjct: 174 KQLKSLNIIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNR 233
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
I GA + K L SL+IC + GVK I+++ L LN+S N + D+ + IS
Sbjct: 234 IGAEGAKLISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGN-QIGDEEAKFISE 292
Query: 420 LTGLVSLN 427
+ L SLN
Sbjct: 293 MKQLTSLN 300
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 102/204 (50%), Gaps = 2/204 (0%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K+ + DS K ++ + L SL I +++ G ++ +++LT LN+ +
Sbjct: 104 VNVKFSRKLLDSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIG 163
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
A + + + L LN+ Q+ +G + S++ L LN+G N+I DE + + +
Sbjct: 164 AKGVKFIIEMKQLKSLNIIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQ 223
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L SLN+ IG EG ++ + L S+++ + I ++ + + LKSLN+ QI
Sbjct: 224 LTSLNICLNRIGAEGAKLISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIG 283
Query: 338 DTGLAALTSLTGLTHLDLFGARIT 361
D ++ + LT L+ + ++
Sbjct: 284 DEEAKFISEMKQLTSLNTYKIKLV 307
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 11/147 (7%)
Query: 333 ARQITDTGLAA--LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+R++ D+ A + + LT LD+ G +I GA ++ K L SL I + GVK
Sbjct: 109 SRKLLDSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVK 168
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
I ++ L LN+ N + + ++LIS + L SLN+ ++I G++ + +K L SL
Sbjct: 169 FIIEMKQLKSLNIIGN-QIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSL 227
Query: 451 TL-------ESCKVTANDIKRLQSRDL 470
+ E K+ + ++K+L S D+
Sbjct: 228 NICLNRIGAEGAKLIS-EMKQLTSLDI 253
>gi|167861930|gb|ACA05664.1| InlA [Listeria monocytogenes]
gi|167862036|gb|ACA05717.1| InlA [Listeria monocytogenes]
gi|194239408|emb|CAQ76844.1| internalin A [Listeria monocytogenes]
gi|222543296|gb|ACM66668.1| internalin A [Listeria monocytogenes]
gi|298359976|gb|ADI77567.1| internalin A [Listeria monocytogenes]
gi|298360582|gb|ADI77870.1| internalin A [Listeria monocytogenes]
gi|298360712|gb|ADI77935.1| internalin A [Listeria monocytogenes]
gi|298360716|gb|ADI77937.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 150/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ + F G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQL---FFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|356506506|ref|XP_003522022.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
Length = 669
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 137/476 (28%), Positives = 213/476 (44%), Gaps = 80/476 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS------GLIHLKD------- 79
L+ LCL G+ D +D++A + L ++DLS +T+ L HL+D
Sbjct: 182 LRLLCLKWCVGIGDLGVDLVAIKCKELTTLDLSYLPITEKCLPSIFKLQHLEDLVLEGCF 241
Query: 80 ---------------CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
C L+ LD + C IS H+ GLS LTS+S I A G
Sbjct: 242 GIDDDSLDVDLLKQGCKTLKRLDISGCQNIS-----HV-GLSKLTSISGGLEKLILADGS 295
Query: 125 KAFAGLIN-LVKLDLERCTRIHGGLVNLKGL-------MKLESLNIKWCNCITDSDMKPL 176
L + L KL + + + G V +GL + L L++ C +TD + L
Sbjct: 296 PVTLSLADGLNKLSMLQSIVLDGCPVTSEGLRAIGNLCISLRELSLSKCLGVTDEALSFL 355
Query: 177 -SGLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGS---- 229
S +L+ L I+ C K+TD IA + LT L +E C + + ++ +G
Sbjct: 356 VSKHKDLRKLDITCCRKITDVSIASIANSCTGLTSLKMESCTLVPS--EAFVLIGQKCHY 413
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHL-KGLTNLESLNL-DSC 286
L L+L ++ D+G S L L +G ITD L ++ + L+ L+L S
Sbjct: 414 LEELDLTDNEIDDEGLMSISSCSWLTSLKIGICLNITDRGLAYVGMRCSKLKELDLYRST 473
Query: 287 GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 343
G+ D G+ + G LE IN S+ T I+D +L L+ S+L++L + +T GLAA
Sbjct: 474 GVDDLGISAIAGGCPGLEMINTSYCTSITDRALIALSKCSNLETLEIRGCLLVTSIGLAA 533
Query: 344 LT-SLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAG---VKHIKDLSS 397
+ + L+ LD+ I DSG L +F +NLR + + +TD G + +I L S
Sbjct: 534 IAMNCRQLSRLDIKKCYNIDDSGMIALAHFSQNLRQINLSYSSVTDVGLLSLANISCLQS 593
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
TLL+L GLV ++ + + GL +K +LRSL E
Sbjct: 594 FTLLHLQ-----------------GLVPGGLAAALLACGGLTKVKLHLSLRSLLPE 632
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 96/397 (24%), Positives = 157/397 (39%), Gaps = 96/397 (24%)
Query: 117 NAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNL----------------------KG 153
+ A+ + A A N+ +LDL C R+ G + L G
Sbjct: 61 RPLRAEHLPALAARYPNVTELDLSLCPRVGDGALGLVAGAYAATLRRMDLSRSRRFTATG 120
Query: 154 LMKLES-------LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK-GLQ 204
L+ L + L++ + D+ + ++ NL+ L ++ C VTD GI + G +
Sbjct: 121 LLSLGARCEHLVELDLSNATELRDAGVAAVARARNLRKLWLARCKMVTDMGIGCIAVGCR 180
Query: 205 KLTLLNLEGC--------------------------PVTAACLDSLSALGSLFYLNLNRC 238
KL LL L+ C P+T CL S+ L L L L C
Sbjct: 181 KLRLLCLKWCVGIGDLGVDLVAIKCKELTTLDLSYLPITEKCLPSIFKLQHLEDLVLEGC 240
Query: 239 ---------------------QLSDDGCEKFSKIGSLKVLNLG----------FNEITDE 267
+L GC+ S +G K+ ++ + +T
Sbjct: 241 FGIDDDSLDVDLLKQGCKTLKRLDISGCQNISHVGLSKLTSISGGLEKLILADGSPVTLS 300
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-TNLESINLS-FTGISDGSLRKLAGLSS 325
L L+ L+S+ LD C + EGL + L +L ++LS G++D +L L
Sbjct: 301 LADGLNKLSMLQSIVLDGCPVTSEGLRAIGNLCISLRELSLSKCLGVTDEALSFLVSKHK 360
Query: 326 -LKSLNLD-ARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYL--RNFKNLRSLEIC 380
L+ L++ R+ITD +A++ S TGLT L + + S A L + L L++
Sbjct: 361 DLRKLDITCCRKITDVSIASIANSCTGLTSLKMESCTLVPSEAFVLIGQKCHYLEELDLT 420
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+ D G+ I S LT L + N+TD+ L +
Sbjct: 421 DNEIDDEGLMSISSCSWLTSLKIGICLNITDRGLAYV 457
>gi|149242641|pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
gi|149242643|pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 116
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ LN + N +TD +KPL
Sbjct: 117 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKPL 168
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 169 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 221
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 222 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 277
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 278 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 327
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L +++D + L N N+ L AG I DL+ L
Sbjct: 328 LQRLFFSNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 366
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 125/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 110
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ +N G
Sbjct: 111 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF---GNQVT 163
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 164 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 219
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 220 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 273
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 274 ----NISPLAGLTALT 285
>gi|85679240|gb|ABC72036.1| InlA [Listeria monocytogenes]
Length = 794
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ NN
Sbjct: 99 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 152
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 153 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 204
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +K++D + L KLT NLE T + ++ LG +L L+L
Sbjct: 205 LTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 257
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 258 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 313
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 314 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 363
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 364 RLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 400
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 127
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 128 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 181
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 182 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKLSD--ISVLAKLTNLESLIAT 236
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 237 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|29423725|gb|AAO73556.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 41 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 94
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 95 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 146
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG +L L
Sbjct: 147 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 199
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 200 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 255
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 256 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 305
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 306 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 344
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 36 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 88
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 89 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 141
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 142 DLKPLANLTTLERLDISSNKLSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 197
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 198 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 251
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 252 ----NISPLAGLTALT 263
>gi|290991352|ref|XP_002678299.1| predicted protein [Naegleria gruberi]
gi|284091911|gb|EFC45555.1| predicted protein [Naegleria gruberi]
Length = 383
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 104/362 (28%), Positives = 159/362 (43%), Gaps = 73/362 (20%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NL+SLD +I +E++ L NLT+ S R +N I + ++ + L L+
Sbjct: 65 NLKSLDVGLVQEICYENVEYISELQNLTTFSIRYSN-IGRKHLQIIGEMSQLTDLN---- 119
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
I G +N + P+ LT + SL + CS + D GI +
Sbjct: 120 --ISGNPIN---------------------SLLPIRPLTRITSLSAADCSFLGDDGIYPI 156
Query: 201 ---KGLQKLTL----LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
KGLQKL L + EGC + +LS +L+LN ++ D ++ SK+
Sbjct: 157 VNFKGLQKLNLSSNGITWEGCMFISEKFPNLS------HLSLNETRICDGAIKRLSKMKQ 210
Query: 254 LKVLNLGFN-EITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
L L++G N +IT E + + LTNL LN+ S + DEGL+ L L+ + F G
Sbjct: 211 LTYLDVGNNAKITMEGIKLISNNLTNLTHLNISSNNVTDEGLMMACDLPKLQEL---FVG 267
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG--LTHLDLFGARITDSGAAYL- 368
QITD+G+ + G L L L IT YL
Sbjct: 268 ---------------------HNQITDSGINEFSEKIGNKLKILSLSRNNITSLCTQYLC 306
Query: 369 RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
NL+ L + G +TD VK I + + L L++S N N+TDK+LE + L ++
Sbjct: 307 TKLTNLKKLYLAGVSITDEDVKLICQCMKLLIYLDVSWN-NVTDKSLEYVIASESLREVD 365
Query: 428 VS 429
V+
Sbjct: 366 VN 367
>gi|167861934|gb|ACA05666.1| InlA [Listeria monocytogenes]
gi|194326141|emb|CAQ77229.1| internalin A [Listeria monocytogenes]
Length = 538
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|22347570|gb|AAM95930.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 114/348 (32%), Positives = 169/348 (48%), Gaps = 54/348 (15%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ NN
Sbjct: 44 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 97
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 98 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 149
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 150 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 202
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 203 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 258
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 259 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 308
Query: 352 HLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D S A L N L AG I DL+ L
Sbjct: 309 RLFFYNNKVSDVSSLASLTNINWLS-----------AGHNQISDLTPL 345
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 37 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 89
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|223698952|gb|ACN19208.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 125/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ + F G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQL---FFGNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|85679234|gb|ABC72033.1| InlA [Listeria monocytogenes]
Length = 794
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 311
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ +++LT
Sbjct: 312 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSNLTK 361
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 362 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 400
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 127
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 128 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 181
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 182 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 236
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 237 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|887026|gb|AAA69527.1| internalin, partial [Listeria monocytogenes]
Length = 346
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 171/349 (48%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 26 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 79
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD + PL
Sbjct: 80 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LXPL 131
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 132 ANLTTLERLDISXNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 184
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 185 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLXGLTKLTELKLGANQISNISP 240
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 241 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 290
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 291 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 329
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 126/276 (45%), Gaps = 46/276 (16%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 21 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 73
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 74 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 126
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L LA L++L+ L++ +++D ++ L LT L L +I+D L NL
Sbjct: 127 DLXPLANLTTLERLDISXNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 182
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLL-----------NLSQNCNLTDKTLEL-------- 416
L + G L D G L+SLT L NL+ LT K EL
Sbjct: 183 ELSLNGNQLKDIGT-----LASLTNLTDLDLANNQISNLAPLXGLT-KLTELKLGANQIS 236
Query: 417 -ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
IS L GL +L +N + L + P+ NL++LT
Sbjct: 237 NISPLAGLTAL--TNLELNENQLEDISPISNLKNLT 270
>gi|85679220|gb|ABC72026.1| InlA [Listeria monocytogenes]
Length = 794
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 171/349 (48%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 311
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L L LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 312 LAGLAALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 361
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 362 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 400
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 127
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 128 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 181
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 182 SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 236
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 237 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLAALT 319
>gi|217965469|ref|YP_002351147.1| internalin-A [Listeria monocytogenes HCC23]
gi|386007166|ref|YP_005925444.1| internalin A [Listeria monocytogenes L99]
gi|386025755|ref|YP_005946531.1| internalin A [Listeria monocytogenes M7]
gi|167861970|gb|ACA05684.1| InlA [Listeria monocytogenes]
gi|167861982|gb|ACA05690.1| InlA [Listeria monocytogenes]
gi|217334739|gb|ACK40533.1| internalin-A [Listeria monocytogenes HCC23]
gi|307569976|emb|CAR83155.1| internalin A [Listeria monocytogenes L99]
gi|336022336|gb|AEH91473.1| internalin A [Listeria monocytogenes M7]
Length = 800
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 114/348 (32%), Positives = 169/348 (48%), Gaps = 54/348 (15%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D S A L N L AG I DL+ L
Sbjct: 365 RLFFYNNKVSDVSSLASLTNINWLS-----------AGHNQISDLTPL 401
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|242082530|ref|XP_002441690.1| hypothetical protein SORBIDRAFT_08g000800 [Sorghum bicolor]
gi|241942383|gb|EES15528.1| hypothetical protein SORBIDRAFT_08g000800 [Sorghum bicolor]
Length = 605
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 175/364 (48%), Gaps = 40/364 (10%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
C+ L+ L +C+ +SD G++ L LTSL +T +++F + L L L
Sbjct: 191 CTELRELSLKWCLGLSDLGIQLLALKCRKLTSLDLS-YTMVTPCMVRSFQKIPKLQTLKL 249
Query: 139 ERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMK-PLSGLTNLKSLQISCSK-VTDS 195
E C + L + + L L++ C+ +TD+++ +S L NL L I+C + +TD
Sbjct: 250 EGCKFMAYALKAIGTSCVSLRELSLSKCSGVTDTELSFAVSRLKNLLKLDITCCRNITDV 309
Query: 196 GIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIG 252
+A + L L +E C V++ L + S L L+L L D+G + S+
Sbjct: 310 SLAAITSSCSSLISLKMESCSHVSSGALQLIGKHCSHLEELDLTDSDLDDEGLKALSRCS 369
Query: 253 SLKVLNLGFN-EITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLS 308
L L +G +I+DE L H+ + L ++L CG + D+G++ + G LES+NLS
Sbjct: 370 KLSSLKVGICLKISDEGLTHIGRSCPKLREIDLYRCGGLSDDGIIQIAQGCPKLESMNLS 429
Query: 309 F-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFGA-RITDSG 364
+ T I+D SL L+ + L +L + IT TGL+ + L+ LD+ I D+G
Sbjct: 430 YCTEITDRSLISLSKCTKLNTLEIRGCPMITSTGLSEIAMGCRLLSKLDIKKCFEINDAG 489
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
YL F + SL +NLS C++TD L +SG++GL
Sbjct: 490 MLYLSQFSH-----------------------SLRQINLSY-CSVTDIGLLSLSGISGLQ 525
Query: 425 SLNV 428
++ +
Sbjct: 526 NMTI 529
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 136/284 (47%), Gaps = 30/284 (10%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL-KDCSNLQSLDFN 89
+L++L L + GV D + S+ +LL +D++ ++TD L + CS+L SL
Sbjct: 268 SLRELSLSKCSGVTDTELSFAVSRLKNLLKLDITCCRNITDVSLAAITSSCSSLISLKME 327
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GL 148
C +S G L+ + + ++ + +G+KA + L L + C +I GL
Sbjct: 328 SCSHVSSGALQLIGKHCSHLEELDLTDSDLDDEGLKALSRCSKLSSLKVGICLKISDEGL 387
Query: 149 VNL-KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQK 205
++ + KL +++ C ++D + ++ G L+S+ +S C+++TD + L K
Sbjct: 388 THIGRSCPKLREIDLYRCGGLSDDGIIQIAQGCPKLESMNLSYCTEITDRSLISLSKCTK 447
Query: 206 LTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
L L + GCP +T+ L ++ GC SK+ K EI
Sbjct: 448 LNTLEIRGCPMITSTGLSEIAM-----------------GCRLLSKLDIKKCF-----EI 485
Query: 265 TDECLVHLKGLTN-LESLNLDSCGIGDEGLVNLTGLTNLESINL 307
D +++L ++ L +NL C + D GL++L+G++ L+++ +
Sbjct: 486 NDAGMLYLSQFSHSLRQINLSYCSVTDIGLLSLSGISGLQNMTI 529
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 38/209 (18%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
GL L CS L SL C++ISD GL H+ R L + R ++ G+ A
Sbjct: 361 GLKALSRCSKLSSLKVGICLKISDEGLTHIGRSCPKLREIDLYRCGGLSDDGIIQIA--- 417
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
+G KLES+N+ +C ITD + LS T L +L+I C
Sbjct: 418 --------------------QGCPKLESMNLSYCTEITDRSLISLSKCTKLNTLEIRGCP 457
Query: 191 KVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEK 247
+T +G++ + G + L+ L+++ C + A + LS SL +NL+ C ++D G
Sbjct: 458 MITSTGLSEIAMGCRLLSKLDIKKCFEINDAGMLYLSQFSHSLRQINLSYCSVTDIGLLS 517
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLT 276
S I L+ + +VHL G+T
Sbjct: 518 LSGISGLQNMT----------IVHLAGMT 536
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 145/301 (48%), Gaps = 35/301 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
G +L L++KWC ++D ++ L+ L SL +S + VT + + + KL L L
Sbjct: 190 GCTELRELSLKWCLGLSDLGIQLLALKCRKLTSLDLSYTMVTPCMVRSFQKIPKLQTLKL 249
Query: 212 EGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGF-NEITDE 267
EGC A L ++ ++ SL L+L++C D F S++ +L L++ ITD
Sbjct: 250 EGCKFMAYALKAIGTSCVSLRELSLSKCSGVTDTELSFAVSRLKNLLKLDITCCRNITDV 309
Query: 268 CLVHL-KGLTNLESLNLDSCGIGDEGLVNLTG--LTNLESINLSFTGISDGSLRKLAGLS 324
L + ++L SL ++SC G + L G ++LE ++L+ + + D L+ L+ S
Sbjct: 310 SLAAITSSCSSLISLKMESCSHVSSGALQLIGKHCSHLEELDLTDSDLDDEGLKALSRCS 369
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGG 382
L SL + G+ S GLTH+ R+ LR +++ CGG
Sbjct: 370 KLSSLKV--------GICLKISDEGLTHIG--------------RSCPKLREIDLYRCGG 407
Query: 383 GLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRH 440
L+D G+ I + L +NLS +TD++L +S T L +L + ITS GL
Sbjct: 408 -LSDDGIIQIAQGCPKLESMNLSYCTEITDRSLISLSKCTKLNTLEIRGCPMITSTGLSE 466
Query: 441 L 441
+
Sbjct: 467 I 467
>gi|22347568|gb|AAM95929.1| internalin A precursor [Listeria monocytogenes]
Length = 743
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 256
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 257 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 306
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 307 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 345
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 37 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 89
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKLSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|167862030|gb|ACA05714.1| InlA [Listeria monocytogenes]
Length = 576
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NHIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 125/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNHITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 89/207 (42%), Gaps = 51/207 (24%)
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
LG +TD V L + +L D GI + + + L NL IN S ++D +
Sbjct: 61 LGKTNVTDT--VSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTD--IT 114
Query: 319 KLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
L L+ L + ++ QI D T LA LT+LTGLT LF ITD L+N NL L
Sbjct: 115 PLKNLTKLVDILMNNNQIADITPLANLTNLTGLT---LFNNHITDIDP--LKNLTNLNRL 169
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
E+ ++D IS L+GL SL + S G
Sbjct: 170 ELSSNTISD------------------------------ISALSGLTSL-----QQLSFG 194
Query: 438 --LRHLKPLKNLRSLTLESCKVTANDI 462
+ LKPL NL TLE +++N +
Sbjct: 195 NQVTDLKPLANLT--TLERLDISSNKV 219
>gi|261334051|emb|CBH17045.1| T. brucei spp.-specific protein [Trypanosoma brucei gambiense DAL972]
Length = 1399
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 129/515 (25%), Positives = 199/515 (38%), Gaps = 142/515 (27%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + +TD + H C L +LD +FC ++ D + LSN+T+L
Sbjct: 590 LSNTHITDRDISHFSKCKELVTLDLSFCDELFD-----ITSLSNITTLE----------- 633
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------ 165
L+L+ C++I GL L L +L LN+K
Sbjct: 634 -----------DLNLDNCSKIRKGLSVLGELPRLRVLNVKGVHLTNSVIGSLGNGKSFVK 682
Query: 166 ----NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV----- 216
NC SD+ LS L+ LK L + SGI L L +L +L+L +
Sbjct: 683 LILDNCKGLSDVTFLSSLSTLKELNLHHCDAVTSGIGTLGRLLQLRVLDLGWTKIDNNSL 742
Query: 217 --TAAC-----------------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
AC + ++++L +L LN++ C G F + L+V
Sbjct: 743 EDICACSSPLVSLNLSHCKEITSISAIASLNALEKLNIDNCCHVTSGWNVFGTLHQLRVA 802
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSF-----TG 311
L I DE + H+ +L +LNL C I D + L+ +T L +N+ + G
Sbjct: 803 VLSNTRINDENIRHISECKSLNTLNLAFCNDITD--ITALSNITMLRELNIDWCFNIEKG 860
Query: 312 ISD-GSLRKLAGL---------------------SSLKSLNLD----------------- 332
+ G L KL L SL LNL+
Sbjct: 861 VEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSSTAIV 920
Query: 333 -----ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
R L ++SL L L+L R+ D + K+L+SL + +
Sbjct: 921 EELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSLNV-------S 973
Query: 388 GVKHIKDLSSL----TLLNLSQN-CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+I D+S+L TL L+ N C+ K E LT L +S + +T+ G+R L
Sbjct: 974 NCNYITDISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRLLS 1033
Query: 443 PLKNLRSLTLESCKVTA-----NDIKRLQSRDLPN 472
KNLR+L L C+ + N+IK L+ + N
Sbjct: 1034 GCKNLRNLELYCCRDVSNIEPINNIKSLEELTIQN 1068
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 110/414 (26%), Positives = 185/414 (44%), Gaps = 37/414 (8%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L +DL+ +++ DS + + C+ L L + C I D + L+ L L+
Sbjct: 225 SRLTNLKCLDLNSTNIDDSCIGEISACAKLSKLSVSECNNIIDA--TPISQLAALEELNL 282
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N IT +G+ L+ L LDL + L +L LE LN+ +C I +++
Sbjct: 283 NSNCHIT-KGIGTLGMLLRLRMLDLSGVSVEDNFLKDLCDCGPLERLNLSYC--IQLTNI 339
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
PLS T ++ L ++ C ++T GI + L KL +L+++G ++ LDS+ GSL
Sbjct: 340 NPLSNATAIEELNLNGCRRIT-RGIGVVWALPKLRVLHMKGVHLSEPSLDSVGTGGSLVK 398
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
++L+ C GF ++T L + LE LN+ C G
Sbjct: 399 VSLDNCA--------------------GFGDMT-----LLSSIVTLEELNIQKCADIISG 433
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLT 351
+ L L L +N+ IS + SL L L++ IT + + AL ++ L
Sbjct: 434 VCCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLTLES--ITGLSNVEALANILTLE 491
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
L L G D+G L N L+ L++ G ++ + ++ LNLS +T
Sbjct: 492 KLSLLGCNGIDAGIGCLGNLPQLKVLDLSGTNTDSDSLRGLCVSQTIVSLNLSHCWKVT- 550
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
++ IS L L LN+S+ +AG L+ L+ L L + +T DI
Sbjct: 551 -SVFHISALETLNELNLSDCIRINAGWEALEKLQQLHVAILSNTHITDRDISHF 603
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 125/489 (25%), Positives = 200/489 (40%), Gaps = 103/489 (21%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI--TA 121
LS + + D + H+ +C +L +L+ FC I+D + LSN+T L +
Sbjct: 804 LSNTRINDENIRHISECKSLNTLNLAFCNDITD-----ITALSNITMLRELNIDWCFNIE 858
Query: 122 QGMKAFAGLINLVKLDLERC------TRIHGGLVNLKGLMKLESLNIKWCNCI------- 168
+G++A L L +LD ++C + + K L+KL N + C+
Sbjct: 859 KGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSSTA 918
Query: 169 -----------TDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGC 214
+ P+S L L+ L + +V D GI+ K LQ L N+ C
Sbjct: 919 IVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSL---NVSNC 975
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ +LS+L +L LN+N C G E F + L+V L +T+E + L G
Sbjct: 976 NYITD-ISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRLLSG 1034
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESIN----LSFTGISDGSLRKLAGLSSLKSLN 330
NL +L L C + N+ + N++S+ + I++G L K+ L L+ L
Sbjct: 1035 CKNLRNLELYCC----RDVSNIEPINNIKSLEELTIQNCHNINEG-LLKVGMLPRLRVLV 1089
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGG--LTDA 387
L Q T L++L L L + G + D + N L+ L+I G L D
Sbjct: 1090 LRKLQSTYFSLSSLGESKSLVKLTIEGPEELCD--IKLISNIATLKELKIAHGDRLLNDV 1147
Query: 388 G---------------------------------------------VKHIKDLSSLTLLN 402
G + HI +L++L LN
Sbjct: 1148 GDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDITHSFELPDIYHISNLTALEELN 1207
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRI-TSAGLRHLKPLKNLRSLTLESCKVT--- 458
LS C E ++ L L LN+S++R+ TS G ++ K+L +L LESC +T
Sbjct: 1208 LS-GCYHIISGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKSLITLNLESCDMTDAS 1266
Query: 459 -ANDIKRLQ 466
DIK L+
Sbjct: 1267 CLADIKTLE 1275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 185/409 (45%), Gaps = 50/409 (12%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++ D LE + +L SL+ N IT + A + L L +L++ C RI G +
Sbjct: 952 RVCDIWLEGISQSKSLQSLNVSNCNYIT--DISALSSLSTLEELNVNCCDRIRKGWEAFE 1009
Query: 153 GLMKLE--SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L +L +L++ W +T+ ++ LSG NL++L++ C + S I + ++ L L
Sbjct: 1010 ALTRLRVATLSVTW---VTNEGIRLLSGCKNLRNLELYCCRDV-SNIEPINNIKSLEELT 1065
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQ-----------------LSDDGCEK------ 247
++ C L + L L L L + Q L+ +G E+
Sbjct: 1066 IQNCHNINEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKL 1125
Query: 248 FSKIGSLKVLNLG-----FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNL 302
S I +LK L + N++ D L L L L L +G+ ++ + +L
Sbjct: 1126 ISNIATLKELKIAHGDRLLNDVGD-----LGKLPWLHVLTLSHFNMGNTCFESVCKIRSL 1180
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
+S++++ + + ++ L++L+ LNL +G ALT+L L L+L R+T
Sbjct: 1181 KSLDITHS-FELPDIYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTT 1239
Query: 363 S-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
S G Y+ K+L +L + +TDA + D+ +L L++ + C + + L
Sbjct: 1240 SYGGYYISRCKSLITLNLESCDMTDASC--LADIKTLEELHIGK-CEELTRGFSALFTLP 1296
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI---KRLQS 467
L LN+ +S IT LR ++ + L L CK NDI +R++S
Sbjct: 1297 QLRILNLMDSLITDEDLREIQLSHTIEDLNLSYCK-ELNDITPVRRIKS 1344
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 164/396 (41%), Gaps = 66/396 (16%)
Query: 133 LVKLDLERCTRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L++L LE T GL N++ L + LE L++ CN I D+ + L L LK L +S
Sbjct: 467 LLQLTLESIT----GLSNVEALANILTLEKLSLLGCNGI-DAGIGCLGNLPQLKVLDLSG 521
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+ + L Q + LNL C + +SAL +L LNL+ C + G E
Sbjct: 522 TNTDSDSLRGLCVSQTIVSLNLSHCWKVTSVFH-ISALETLNELNLSDCIRINAGWEALE 580
Query: 250 KIGSLKVLNLGFNEITDECLVH-----------------------LKGLTNLESLNLDSC 286
K+ L V L ITD + H L +T LE LNLD+C
Sbjct: 581 KLQQLHVAILSNTHITDRDISHFSKCKELVTLDLSFCDELFDITSLSNITTLEDLNLDNC 640
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALT 345
+GL L L L +N+ +++ + L S L LD + ++D + L+
Sbjct: 641 SKIRKGLSVLGELPRLRVLNVKGVHLTNSVIGSLGNGKSFVKLILDNCKGLSD--VTFLS 698
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI---------------CGGGLTDAGVK 390
SL+ L L+L SG L LR L++ C L +
Sbjct: 699 SLSTLKELNLHHCDAVTSGIGTLGRLLQLRVLDLGWTKIDNNSLEDICACSSPLVSLNLS 758
Query: 391 HIKDLSSLTL---------LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
H K+++S++ LN+ C++T + L L +SN+RI +RH+
Sbjct: 759 HCKEITSISAIASLNALEKLNIDNCCHVTSG-WNVFGTLHQLRVAVLSNTRINDENIRHI 817
Query: 442 KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
K+L +L L C NDI + + L N+ R
Sbjct: 818 SECKSLNTLNLAFC----NDITDITA--LSNITMLR 847
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 119/454 (26%), Positives = 198/454 (43%), Gaps = 38/454 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D W++ I SQ SL S+++S + +TD + L S L+ L+ N C +I G E
Sbjct: 953 VCDIWLEGI-SQSKSLQSLNVSNCNYITD--ISALSSLSTLEELNVNCCDRIRKG-WEAF 1008
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L+ L + +T +G++ +G NL L+L C R + + + LE L I
Sbjct: 1009 EALTRLRVATLSVT-WVTNEGIRLLSGCKNLRNLEL-YCCRDVSNIEPINNIKSLEELTI 1066
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG----CPVTA 218
+ C+ I + +K + L L+ L + + T ++ L + L L +EG C +
Sbjct: 1067 QNCHNINEGLLK-VGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKL 1125
Query: 219 AC----------------LDSLSALGSLFYLN---LNRCQLSDDGCEKFSKIGSLKVLNL 259
L+ + LG L +L+ L+ + + E KI SLK L++
Sbjct: 1126 ISNIATLKELKIAHGDRLLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDI 1185
Query: 260 GFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG-SL 317
+ E+ D + H+ LT LE LNL C G LT L L +NLS T ++
Sbjct: 1186 THSFELPD--IYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTSYGG 1243
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
++ SL +LNL++ +TD + L + L L + G + L LR L
Sbjct: 1244 YYISRCKSLITLNLESCDMTDA--SCLADIKTLEELHIGKCEELTRGFSALFTLPQLRIL 1301
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSA 436
+ +TD ++ I+ ++ LNLS L D T + I + + S R
Sbjct: 1302 NLMDSLITDEDLREIQLSHTIEDLNLSYCKELNDITPVRRIKSIKKMDLHRSSEGRGLRE 1361
Query: 437 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 470
G R L L L + +++ V+ + K L+ R +
Sbjct: 1362 GFRSLLELPCLSWVDIKNANVSFDVYKELKERKV 1395
>gi|219821312|gb|ACL37786.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 171/350 (48%), Gaps = 54/350 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 254
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 255 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 350 LTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D S A L N L AG I DL+ L
Sbjct: 305 LQRLFFYNNKVSDVSSLASLTNINWLS-----------AGHNQISDLTPL 343
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|347547841|ref|YP_004854169.1| putative internalin A [Listeria ivanovii subsp. ivanovii PAM 55]
gi|346980912|emb|CBW84831.1| Putative internalin A [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 798
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 120/392 (30%), Positives = 187/392 (47%), Gaps = 54/392 (13%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAG---LINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L +TSL R +G+ + AG L N+ +LD L L L KL SL
Sbjct: 75 LDGITSLEADR------KGITSIAGVEYLNNVTQLDFSYNQITD--LTPLANLTKLTSLV 126
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT-------------- 207
+ N I +D+ PL LT+L L + +K+TD +A L L LT
Sbjct: 127 MN-NNQI--ADLTPLQNLTSLTELTLFYNKITD--VAPLANLTNLTNLAITDNEISDVTP 181
Query: 208 ---LLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L NLEG + D L+ L L LNL+R +++D +K+ +L+ L+L N
Sbjct: 182 IGNLTNLEGLSIGNKVTDIKPLANLTKLERLNLSRNKITD--ISPVAKLINLQSLSLDNN 239
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
+ +D L L LTNL L+L S + D G L LTNL+ +NL IS+ L ++
Sbjct: 240 QFSD--LTPLGILTNLTELSLYSNHLSDIG--TLASLTNLKKLNLMDNQISN--LAPISN 293
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
L++L LNL QI+D L +++LT LT L + ++ D + + + NL L +
Sbjct: 294 LTNLTDLNLSTNQISD--LKPISNLTNLTVLQVPTNQLED--ISPISSLPNLEFLTLYTN 349
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
++D + +++L+ L L N ++D + I+ LT L L+ ++I + L L
Sbjct: 350 QISD--LSPLENLTKLKQLFFYDN-KVSD--VSPIANLTSLQELSAGTNQI--SDLTPLA 402
Query: 443 PLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
L L L L+ KVT+ +K + +PN V
Sbjct: 403 KLTRLTQLGLDKQKVTSQPVKYQSNLVVPNAV 434
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 151/310 (48%), Gaps = 36/310 (11%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+ +T +D L G+T+L++ + + + +G+ YL +T L+ +T L L
Sbjct: 67 SDTVTQTD---LDGITSLEADRKGITSI--AGVEYL---NNVTQLDFSYNQITD--LTPL 116
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+ L L L +N Q++D + SL L L +N+ITD + L LTNL +L +
Sbjct: 117 ANLTKLTSLVMNNNQIAD--LTPLQNLTSLTELTLFYNKITD--VAPLANLTNLTNLAIT 172
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
I D + + LTNLE +++ ++D ++ LA L+ L+ LNL +ITD ++ +
Sbjct: 173 DNEISD--VTPIGNLTNLEGLSIG-NKVTD--IKPLANLTKLERLNLSRNKITD--ISPV 225
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
L L L L + +D L NL L + L+D G + L++L LNL
Sbjct: 226 AKLINLQSLSLDNNQFSD--LTPLGILTNLTELSLYSNHLSDIGT--LASLTNLKKLNLM 281
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
N L IS LT L LN+S ++I+ LKP+ NL +LT+ +V N ++
Sbjct: 282 DNQ---ISNLAPISNLTNLTDLNLSTNQIS-----DLKPISNLTNLTV--LQVPTNQLED 331
Query: 465 LQS-RDLPNL 473
+ LPNL
Sbjct: 332 ISPISSLPNL 341
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 90/214 (42%), Gaps = 59/214 (27%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
HL D L SL + + D + +L +SNLT NL
Sbjct: 262 HLSDIGTLASLTNLKKLNLMDNQISNLAPISNLT----------------------NLTD 299
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD- 194
L+L N I SD+KP+S LTNL LQ+ +++ D
Sbjct: 300 LNLS-------------------------TNQI--SDLKPISNLTNLTVLQVPTNQLEDI 332
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
S I+ L L+ LTL + + + L++L+ L LF+ + ++SD + + SL
Sbjct: 333 SPISSLPNLEFLTLYTNQISDL--SPLENLTKLKQLFFYD---NKVSD--VSPIANLTSL 385
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+ L+ G N+I+D L L LT L L LD +
Sbjct: 386 QELSAGTNQISD--LTPLAKLTRLTQLGLDKQKV 417
>gi|290979547|ref|XP_002672495.1| predicted protein [Naegleria gruberi]
gi|284086072|gb|EFC39751.1| predicted protein [Naegleria gruberi]
Length = 665
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 18/252 (7%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
IT ++ ++ L + + I+ ++ D G + + +++LT L++ T + + ++
Sbjct: 398 ITHEVLQNITKLEKVNYVDIAAIRIGDEGASMIGQMKQLTYLDI---SFTGISYNGMRSI 454
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKV------------LNLGFNEITDECLVHLKGL 275
G L NL + S D E +S + V L++ +NEI DE + L
Sbjct: 455 GQL--TNLTQLIFSSDDYENYSAPKGVTVAIHLRNLKKLTHLDITYNEIGDEGSQFISEL 512
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
NL L + + + +EG ++ L NL +N+S + S++ L L +L SL
Sbjct: 513 LNLTYLEMPNNQLRNEGFKMISKLENLTHLNISNNDFNCESMKHLCELKNLTSLEAFNTG 572
Query: 336 ITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
IT + + + L LT LDL I + GA Y+ K L+SL++ L GVK++
Sbjct: 573 ITSNDVKLIANHLKYLTELDLSCNDIGNEGAKYVSELKQLQSLQLAQTNLDSEGVKYLVR 632
Query: 395 LSSLTLLNLSQN 406
L LT L++S+N
Sbjct: 633 LDQLTDLDVSEN 644
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 33/235 (14%)
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
+IT E L ++ L + +++ + IGDEG + + L +++SFTGIS +R +
Sbjct: 397 KITHEVLQNITKLEKVNYVDIAAIRIGDEGASMIGQMKQLTYLDISFTGISYNGMRSIGQ 456
Query: 323 LSSLKSLNLDARQITD-------TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L++L L + + T L +L LTHLD+ I D G+ ++ NL
Sbjct: 457 LTNLTQLIFSSDDYENYSAPKGVTVAIHLRNLKKLTHLDITYNEIGDEGSQFISELLNLT 516
Query: 376 SLEICGGGLTDAG------------------------VKHIKDLSSLTLLNLSQNCNLTD 411
LE+ L + G +KH+ +L +LT L + N +T
Sbjct: 517 YLEMPNNQLRNEGFKMISKLENLTHLNISNNDFNCESMKHLCELKNLTSLE-AFNTGITS 575
Query: 412 KTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
++LI+ L L L++S + I + G +++ LK L+SL L + + +K L
Sbjct: 576 NDVKLIANHLKYLTELDLSCNDIGNEGAKYVSELKQLQSLQLAQTNLDSEGVKYL 630
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 118/290 (40%), Gaps = 24/290 (8%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+ P+ I+ ++ + + V + A R + D+ +I Q L
Sbjct: 393 IYPKKITHEVLQNITKLEKVNYVDIAAIR--------------IGDEGASMIG-QMKQLT 437
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDF------NFCIQISDGGLEHLRGLSNLTSLSFR 114
+D+S + ++ +G+ + +NL L F N+ HLR L LT L
Sbjct: 438 YLDISFTGISYNGMRSIGQLTNLTQLIFSSDDYENYSAPKGVTVAIHLRNLKKLTHLDIT 497
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I +G + + L+NL L++ + G + L L LNI N MK
Sbjct: 498 YN-EIGDEGSQFISELLNLTYLEMPNNQLRNEGFKMISKLENLTHLNIS-NNDFNCESMK 555
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L L NL SL+ + +T + + + L+ LT L+L + +S L L L
Sbjct: 556 HLCELKNLTSLEAFNTGITSNDVKLIANHLKYLTELDLSCNDIGNEGAKYVSELKQLQSL 615
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L + L +G + ++ L L++ N I E +L + LE L++
Sbjct: 616 QLAQTNLDSEGVKYLVRLDQLTDLDVSENSIDAERCKYLNEMKQLEELSI 665
>gi|343413825|emb|CCD21196.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 510
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 142/493 (28%), Positives = 223/493 (45%), Gaps = 105/493 (21%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L +L +
Sbjct: 21 SLRTLGLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSKLSSLHTLGLSH 75
Query: 91 CIQISDG------------GLEHLRGLSNLTSLS-------FRRNNAITAQGMKAFAGLI 131
C I+D GL H G+++++ LS ++ + + L
Sbjct: 76 CTGITDVPPLSVLSSLRTLGLSHCTGITDVSPLSVFSSLRMLYLSHCTGITDVSPLSKLS 135
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQIS-C 189
+L LDL CT G+ ++ L KL SL+ + +C +D+ PLS L++L +L +S C
Sbjct: 136 SLRTLDLSHCT----GITDVSPLSKLSSLHTLGLSHCTGITDVSPLSKLSSLHTLDLSHC 191
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+ +TD + L L L L L C + LS L SL L+L+ C D S
Sbjct: 192 TGITD--VPPLSVLSSLRTLGLSHC-TGITDVSPLSVLSSLRMLDLSHCTGITD-VSPLS 247
Query: 250 KIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEG------------LVN 295
K+ SL+ L L ITD + L L++L L L C GI D L N
Sbjct: 248 KLSSLRTLGLSHCTGITD--VSPLSKLSSLHILGLSHCTGITDVSPLTTIIGFEKLYLSN 305
Query: 296 LTGLTNLESINLSF----------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
TG+T++ ++ TGI+D S L+ LSSL++L+L + G+A ++
Sbjct: 306 CTGITDVSPLSKLSSLRSLDLSHCTGITDVS--PLSELSSLRTLDLSHCR----GIANVS 359
Query: 346 SLTGLTHLDLFGAR----ITDSGAAYLRNFKNLRSLEI--CGG----------------- 382
L+ L+ L + ITD + L F +LR+L++ C G
Sbjct: 360 PLSNLSSLRMLNLSHCTGITD--VSPLSVFSSLRTLDLSHCTGITNVSPLSNLSSLRSLD 417
Query: 383 -----GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
G+TD V + +LSSL LNLS +TD + +S L+ L +L++S+ G
Sbjct: 418 LSHCTGITD--VSPLSELSSLEKLNLSHCTAITD--VSPLSELSSLHTLDLSH----CTG 469
Query: 438 LRHLKPLKNLRSL 450
+ + PL L SL
Sbjct: 470 ITDVSPLSKLSSL 482
>gi|223698619|gb|ACN18986.1| truncated internalin A [Listeria monocytogenes]
gi|223698691|gb|ACN19034.1| truncated internalin A [Listeria monocytogenes]
gi|223698706|gb|ACN19044.1| truncated internalin A [Listeria monocytogenes]
gi|223698715|gb|ACN19050.1| truncated internalin A [Listeria monocytogenes]
gi|223698781|gb|ACN19094.1| truncated internalin A [Listeria monocytogenes]
gi|223698784|gb|ACN19096.1| truncated internalin A [Listeria monocytogenes]
gi|223698814|gb|ACN19116.1| truncated internalin A [Listeria monocytogenes]
gi|223698838|gb|ACN19132.1| truncated internalin A [Listeria monocytogenes]
gi|223698844|gb|ACN19136.1| truncated internalin A [Listeria monocytogenes]
gi|223698850|gb|ACN19140.1| truncated internalin A [Listeria monocytogenes]
gi|223698856|gb|ACN19144.1| truncated internalin A [Listeria monocytogenes]
gi|223698880|gb|ACN19160.1| truncated internalin A [Listeria monocytogenes]
gi|223698958|gb|ACN19212.1| truncated internalin A [Listeria monocytogenes]
gi|223698967|gb|ACN19218.1| truncated internalin A [Listeria monocytogenes]
gi|223698970|gb|ACN19220.1| truncated internalin A [Listeria monocytogenes]
gi|223698973|gb|ACN19222.1| truncated internalin A [Listeria monocytogenes]
gi|223698982|gb|ACN19228.1| truncated internalin A [Listeria monocytogenes]
Length = 614
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|167861956|gb|ACA05677.1| InlA [Listeria monocytogenes]
Length = 800
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 169/345 (48%), Gaps = 48/345 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
LT L+ L IS +KV+D S +A L L+ L N + +T L L +L L+LN
Sbjct: 206 LTTLERLDISSNKVSDISVLARLPTLESLIATNNQISDITP-----LGILTNLDELSLNG 260
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNL 296
QL D G + + +L L+L N+I++ L L GLT L L L + I + L L
Sbjct: 261 NQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGL 316
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLTHL 353
T LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L L
Sbjct: 317 TALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+ +++D + L N N+ L AG I DL+ L
Sbjct: 367 FFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 161/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ LK LTNL L L S I D + L+GLTNL+ LSF G L+ LA L++L
Sbjct: 157 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L L L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLARLPTLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|255025517|ref|ZP_05297503.1| internalin A [Listeria monocytogenes FSL J2-003]
Length = 744
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|124002318|ref|ZP_01687171.1| leucine-rich protein [Microscilla marina ATCC 23134]
gi|123992147|gb|EAY31515.1| leucine-rich protein [Microscilla marina ATCC 23134]
Length = 1282
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 117/404 (28%), Positives = 180/404 (44%), Gaps = 55/404 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++L +D+ + +L L+SL+ F S LE+L L+ LT LS N
Sbjct: 219 LKQLELEENDI--KKIENLHHLPQLKSLNLRFN---SFEKLENLDALTELTELSLGYNGI 273
Query: 119 ITAQGMKA----------FAGLINLVKLD----LERCTRIHGGLVNLKGLMKLESLNIKW 164
+G++ F + L LD LE+ H G+ ++ L KL L
Sbjct: 274 SKIEGLEKLTKLKMLGLMFNRVTKLENLDTLTELEKLWMNHTGIKKIENLDKLTKLTHLS 333
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDS 223
C + ++ L LT L SL + +K+ S I L+ L LT L ++G V LD+
Sbjct: 334 LMCSKVTKIENLEALTQLTSLSLHATKI--SKIENLEALTNLTKLRVDGNKVAKIENLDN 391
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGLTNLES 280
L+ L L L + K +G L+ L+LG IT + +L+GL LE
Sbjct: 392 LTQLDDLM--------LGGNPISKIENLGHLIKLRKLDLGGLAITK--IENLEGLRTLEQ 441
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL-NLDARQITDT 339
L+L I E + NL GLT L+ + L T +S K+ L+ L +L LD + T
Sbjct: 442 LDLGGSQI--ETIENLEGLTGLQKLELRATKVS-----KIENLNHLPALTELDLSETAIT 494
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
+ LT L GL L L +IT L L L +C L+ ++++ L L
Sbjct: 495 KIEGLTGLEGLKELSLSKNKITK--IENLAGLSKLEKLSLCASNLSK--IENLTGLPKLR 550
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
L L +N + LE + GL L L+++N++IT H++P
Sbjct: 551 ELCLEKNA---IECLENLRGLPALKELDLNNNQIT-----HIQP 586
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 174/399 (43%), Gaps = 91/399 (22%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH------------- 145
+E+L L+ LTSLS + ++A L L ++D + +I
Sbjct: 342 IENLEALTQLTSLSLHATKISKIENLEALTNLTKL-RVDGNKVAKIENLDNLTQLDDLML 400
Query: 146 GG-----LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
GG + NL L+KL L++ + + ++ L GL L+ L + S++ I L
Sbjct: 401 GGNPISKIENLGHLIKLRKLDL---GGLAITKIENLEGLRTLEQLDLGGSQI--ETIENL 455
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
+GL L L L V+ +++L+ L +L L+L+ ++ E + + LK L+L
Sbjct: 456 EGLTGLQKLELRATKVSK--IENLNHLPALTELDLSETAITK--IEGLTGLEGLKELSLS 511
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
N+IT + +L GL+ LE L+L C + NLTGL L + L I L L
Sbjct: 512 KNKITK--IENLAGLSKLEKLSL--CASNLSKIENLTGLPKLRELCLEKNAIE--CLENL 565
Query: 321 AGLSSLKSLNLDARQITDTGLAALTS--------------------LTGLTHLDLFGARI 360
GL +LK L+L+ QIT AL + +TGLT LDL
Sbjct: 566 RGLPALKELDLNNNQITHIQPNALPTQLAELNLSQNQLIKVEHLAGVTGLTELDL----- 620
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL------NLSQNCNLTD--- 411
+++ + + NF++L +LE D I L +LT L N+ QN +T+
Sbjct: 621 SENNISKIENFEDLPALETL-----DLSYNKITRLENLTALPNLREVNIYQN-QITEIAT 674
Query: 412 -----------------KTLELISGLTGLVSLNVSNSRI 433
T+E++ TGL ++V N++I
Sbjct: 675 DAVTRQLQELDLEQNQISTIEILVNFTGLSQVDVGNNQI 713
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 112/249 (44%), Gaps = 40/249 (16%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
S D E + + +L+ L+L N+I E + +L L LE LNL I E + NL LT
Sbjct: 96 SIDRIENIAHLTNLQYLDLEENDI--EVIENLDHLARLEYLNLRGNAI--EKIGNLNALT 151
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSL-NLDARQITDTGLAALTSLTGLTHLDL---- 355
L + LS SL ++ L+ LK L NLD R+ + L LT LT LDL
Sbjct: 152 QLVHLELS-----SNSLERVENLNHLKHLQNLDLRENNIKKIENLAGLTALTRLDLGYNG 206
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
FG L N L+ LE+ + ++++ L L LNL N + + LE
Sbjct: 207 FGK------IEGLHNLPRLKQLELEENDIKK--IENLHHLPQLKSLNLRFN---SFEKLE 255
Query: 416 LISGLTGLVSLNVSNSRITS-AGLRHLKPLK-------------NLRSLT-LESCKVTAN 460
+ LT L L++ + I+ GL L LK NL +LT LE +
Sbjct: 256 NLDALTELTELSLGYNGISKIEGLEKLTKLKMLGLMFNRVTKLENLDTLTELEKLWMNHT 315
Query: 461 DIKRLQSRD 469
IK++++ D
Sbjct: 316 GIKKIENLD 324
>gi|290981770|ref|XP_002673604.1| hypothetical protein NAEGRDRAFT_58930 [Naegleria gruberi]
gi|284087189|gb|EFC40860.1| hypothetical protein NAEGRDRAFT_58930 [Naegleria gruberi]
Length = 494
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 140/296 (47%), Gaps = 15/296 (5%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI---TDSDMKPLSG 178
Q K F L KLD+ + G ++ L L SL++ N + +S ++ L
Sbjct: 163 QFYKIFEKTKQLTKLDIGKSIIWLEGFKSITELKHLNSLDMN--NMVFMEKESKLELLES 220
Query: 179 LTNLKSLQISCSKVTDSGIAY-----LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
++ L Q++C ++ + + + + +++LT L++ ++ LS L L +L
Sbjct: 221 ISQLH--QLTCLNISSNNVGFNTFKPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHL 278
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N+N + +G + SK+ L+ L N E + + L +L++ IG+ G+
Sbjct: 279 NVNCTIIGIEGAKYISKLTKLRTLIAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGI 338
Query: 294 VNLTGLTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
L+ + L +N++ I+ + + LS L L++ + I G+ A+++++ L
Sbjct: 339 KYLSKMKQLTELNINDNAINQFGTEESKLIRELSQLTKLSISSNNIGIEGVTAISTMSQL 398
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L++F RI +GA + +NL L+IC + G K I + LT L++++N
Sbjct: 399 RTLNIFFNRIGLAGAKLISGMQNLTVLDICNNDIGTNGAKEISKMKQLTKLDIARN 454
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 128/288 (44%), Gaps = 9/288 (3%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGG-----LVNLKGLMKLESLNIKWCNCITDSDM 173
I +G K+ L +L LD+ + L ++ L +L LNI N + +
Sbjct: 184 IWLEGFKSITELKHLNSLDMNNMVFMEKESKLELLESISQLHQLTCLNIS-SNNVGFNTF 242
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
KP+ + L L +S + ++D G L L +LT LN+ + +S L L L
Sbjct: 243 KPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNVNCTIIGIEGAKYISKLTKLRTL 302
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI---GD 290
R +GC+ FS++ L L++ N I + + +L + L LN++ I G
Sbjct: 303 IAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSKMKQLTELNINDNAINQFGT 362
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
E + L+ L +++S I + ++ +S L++LN+ +I G ++ + L
Sbjct: 363 EESKLIRELSQLTKLSISSNNIGIEGVTAISTMSQLRTLNIFFNRIGLAGAKLISGMQNL 422
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
T LD+ I +GA + K L L+I + + G K +K + L
Sbjct: 423 TVLDICNNDIGTNGAKEISKMKQLTKLDIARNMIGNEGAKALKSMKQL 470
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 117/257 (45%), Gaps = 9/257 (3%)
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-----EKFSKIGSLKVLN 258
++LT L++ + S++ L L L++N + E S++ L LN
Sbjct: 172 KQLTKLDIGKSIIWLEGFKSITELKHLNSLDMNNMVFMEKESKLELLESISQLHQLTCLN 231
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
+ N + + + L L++ I DEG L+ L+ L +N++ T I +
Sbjct: 232 ISSNNVGFNTFKPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNVNCTIIGIEGAK 291
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
++ L+ L++L G + + LT LD+ I ++G YL K L L
Sbjct: 292 YISKLTKLRTLIAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSKMKQLTELN 351
Query: 379 ICGGGLTDAGV---KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
I + G K I++LS LT L++S N N+ + + IS ++ L +LN+ +RI
Sbjct: 352 INDNAINQFGTEESKLIRELSQLTKLSISSN-NIGIEGVTAISTMSQLRTLNIFFNRIGL 410
Query: 436 AGLRHLKPLKNLRSLTL 452
AG + + ++NL L +
Sbjct: 411 AGAKLISGMQNLTVLDI 427
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 111/257 (43%), Gaps = 28/257 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L +D+S + ++D G L S L L+ N C I G +++ L+ L +L RNN
Sbjct: 250 QLTYLDVSWNYISDEGAKVLSQLSQLTHLNVN-CTIIGIEGAKYISKLTKLRTLIAARNN 308
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK--WCNCITDSDMKP 175
+G + F+ + L LD+ + + G+ L + +L LNI N + K
Sbjct: 309 -FWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSKMKQLTELNINDNAINQFGTEESKL 367
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+ L+ L L IS + + G+ + + +L LN+ F+
Sbjct: 368 IRELSQLTKLSISSNNIGIEGVTAISTMSQLRTLNI-------------------FF--- 405
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
NR L+ G + S + +L VL++ N+I + + L L++ IG+EG
Sbjct: 406 NRIGLA--GAKLISGMQNLTVLDICNNDIGTNGAKEISKMKQLTKLDIARNMIGNEGAKA 463
Query: 296 LTGLTNLESINLSFTGI 312
L + L+S+ +F I
Sbjct: 464 LKSMKQLKSLRNTFNNI 480
>gi|223698700|gb|ACN19040.1| truncated internalin A [Listeria monocytogenes]
Length = 599
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|290970032|ref|XP_002668015.1| predicted protein [Naegleria gruberi]
gi|284081037|gb|EFC35271.1| predicted protein [Naegleria gruberi]
Length = 224
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 5/207 (2%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT L++ + + + L YL++ R ++ G + + LK L + +N
Sbjct: 1 MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60
Query: 263 EITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
+ D + + +K LTNL N+++ I ++G ++ L + ++N+SF I + L +
Sbjct: 61 SVGDGAKYISEMKQLTNL---NVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHI 117
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
+ + L LN+ + I DTG+ L L LT LD+ I + G L + L L+I
Sbjct: 118 SRMKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDIS 177
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ GVKHI ++ +LT N+ NC
Sbjct: 178 ECCIQYEGVKHISEMKNLTYPNICLNC 204
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 99/195 (50%), Gaps = 2/195 (1%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
L L++ N I +E + + L L++ I +GL ++T L L+ + + + +
Sbjct: 3 QLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYNSV 62
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
DG+ + ++ + L +LN++ I + G ++ L +T+L++ I + G ++ K
Sbjct: 63 GDGA-KYISEMKQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHISRMK 121
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
L L I + D GV + L LT L++S++ + +K +L+S + L L++S
Sbjct: 122 QLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHI-IGEKGTKLLSEMEQLTHLDISECC 180
Query: 433 ITSAGLRHLKPLKNL 447
I G++H+ +KNL
Sbjct: 181 IQYEGVKHISEMKNL 195
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 1/223 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L L +S + + + G ++ +++LT L++ + + L+ ++ L L L +
Sbjct: 1 MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D G + S++ L LN+ I ++ + L + +LN+ IG++GL +++
Sbjct: 61 SVGD-GAKYISEMKQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHISR 119
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L +N+ I D + L GL L +L++ I + G L+ + LTHLD+
Sbjct: 120 MKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDISEC 179
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
I G ++ KNL IC G K + ++ +L L
Sbjct: 180 CIQYEGVKHISEMKNLTYPNICLNCFGKGGAKCLCEMKNLIKL 222
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 2/147 (1%)
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L L++ I + G + + LT+LD+ I G ++ N L+ L I
Sbjct: 1 MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ D G K+I ++ LT LN++ C + +K + IS L + +LN+S + I + GL H+
Sbjct: 61 SVGD-GAKYISEMKQLTNLNVNTAC-INEKGAKFISELPLVTNLNISFNEIGNQGLEHIS 118
Query: 443 PLKNLRSLTLESCKVTANDIKRLQSRD 469
+K L L ++S + + L D
Sbjct: 119 RMKQLTHLNIQSNNIDDTGVYFLHGLD 145
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 3/225 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LT LS NN I +G K + L LD+ R GL ++ L KL+ L I +
Sbjct: 1 MRQLTCLSVSNNN-IGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYY 59
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N + D K +S + L +L ++ + + + G ++ L +T LN+ + L+ +
Sbjct: 60 -NSVGDG-AKYISEMKQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHI 117
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L +LN+ + D G + L L++ + I ++ L + L L++
Sbjct: 118 SRMKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDIS 177
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
C I EG+ +++ + NL N+ G + L + +L L
Sbjct: 178 ECCIQYEGVKHISEMKNLTYPNICLNCFGKGGAKCLCEMKNLIKL 222
>gi|302761780|ref|XP_002964312.1| hypothetical protein SELMODRAFT_142102 [Selaginella moellendorffii]
gi|300168041|gb|EFJ34645.1| hypothetical protein SELMODRAFT_142102 [Selaginella moellendorffii]
Length = 603
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 108/421 (25%), Positives = 188/421 (44%), Gaps = 49/421 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L + D + ++A++ L+ +DLS ++VTD G+ ++ + L++L+ C
Sbjct: 139 LKTLVLKGCVAITDAGIKLVAARSEELMILDLSFTEVTDEGVKYVSELKALRTLNLMGCN 198
Query: 93 QISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN 150
+ D L +L+ +L L R +++ G+ A L L+ L L C+++ ++
Sbjct: 199 NVGDRALSYLQENCKSLVDLDVSRCQNVSSVGI---AALPTLLTLHLCHCSQVTEDAFLD 255
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYL----KGLQK 205
+ +++L + C DS + +G LK L + S+ VTD I L K L+K
Sbjct: 256 FEKPNGIQTLRLDGCEFTHDSLDRVAAGCQELKELSLCKSRGVTDKRIDRLITSCKFLKK 315
Query: 206 LTL--------LNLEGCPVTAACLDSLSALGSLFY-----------------LNLNRCQL 240
L L ++L ++ + SL SL L++ C L
Sbjct: 316 LDLTCCFDVTEISLLSIARSSTSIKSLKLESSLMVTDNSLPMVFESCHLLEELDVTDCNL 375
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT- 297
+ G E L+VL L F I+D + + G L L+L C +GD G++++
Sbjct: 376 TGAGLEPIGNCVLLRVLKLAFCNISDYGIFFVGAGCHKLMELDLYRCRSVGDAGVISVVN 435
Query: 298 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-LTGLTHLD 354
G +L +NLS+ + ISD S+ +A LS L L + +T GL + + L LD
Sbjct: 436 GCQDLRVLNLSYCSRISDASMTAIARLSKLSQLEIRGCTLVTSDGLTQVAAGCKRLVELD 495
Query: 355 L-FGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLT------LLNLSQN 406
+ RI D G L + +LR + + LT+ G+ + L + L N+S
Sbjct: 496 IKRCTRIGDPGLLALEHLCPDLRQINVSYCPLTNNGMMALAKLGCMQNMKLVHLKNVSME 555
Query: 407 C 407
C
Sbjct: 556 C 556
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 115/438 (26%), Positives = 197/438 (44%), Gaps = 39/438 (8%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
L + G + ++ SL+ +DLS S V D GL+ L + ++ L CI+++D
Sbjct: 67 LNRICGFTSTGLRYLSQHCLSLVEMDLSYCSYVEDDGLLGLARLNRIEKLKLTGCIRVTD 126
Query: 97 GGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGL 154
GLE L G L +L + AIT G+K A L+ LDL G+ + L
Sbjct: 127 MGLESLAAGCHRLKTLVLKGCVAITDAGIKLVAARSEELMILDLSFTEVTDEGVKYVSEL 186
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
L +LN+ CN + D L LQ +C + D ++ + + +
Sbjct: 187 KALRTLNLMGCNNVGDR---------ALSYLQENCKSLVDLDVSRCQNVSSV-------- 229
Query: 215 PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL- 272
++AL +L L+L C Q+++D F K ++ L L E T + L +
Sbjct: 230 --------GIAALPTLLTLHLCHCSQVTEDAFLDFEKPNGIQTLRLDGCEFTHDSLDRVA 281
Query: 273 KGLTNLESLNL-DSCGIGDEGLVNL-TGLTNLESINLSFT-GISDGSLRKLAGLS-SLKS 328
G L+ L+L S G+ D+ + L T L+ ++L+ +++ SL +A S S+KS
Sbjct: 282 AGCQELKELSLCKSRGVTDKRIDRLITSCKFLKKLDLTCCFDVTEISLLSIARSSTSIKS 341
Query: 329 LNLDAR-QITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
L L++ +TD L S L LD+ +T +G + N LR L++ ++D
Sbjct: 342 LKLESSLMVTDNSLPMVFESCHLLEELDVTDCNLTGAGLEPIGNCVLLRVLKLAFCNISD 401
Query: 387 AGVKHI-KDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHLKP 443
G+ + L L+L + ++ D + +++G L LN+S SRI+ A + +
Sbjct: 402 YGIFFVGAGCHKLMELDLYRCRSVGDAGVISVVNGCQDLRVLNLSYCSRISDASMTAIAR 461
Query: 444 LKNLRSLTLESCKVTAND 461
L L L + C + +D
Sbjct: 462 LSKLSQLEIRGCTLVTSD 479
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 264 ITDECLVHL--KGLTNLESLNLDS-CGIGDEGLVNLT-GLTNLESINLSF-TGISDGSLR 318
+TDE L+H+ K L ++ L+ CG GL L+ +L ++LS+ + + D L
Sbjct: 46 VTDENLIHVADKAGKRLAAIYLNRICGFTSTGLRYLSQHCLSLVEMDLSYCSYVEDDGLL 105
Query: 319 KLAGLSSLKSLNLD-ARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLR-NFKNL 374
LA L+ ++ L L ++TD GL +L + L L L G ITD+G + + L
Sbjct: 106 GLARLNRIEKLKLTGCIRVTDMGLESLAAGCHRLKTLVLKGCVAITDAGIKLVAARSEEL 165
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSR- 432
L++ +TD GVK++ +L +L LNL N+ D+ L + LV L+VS +
Sbjct: 166 MILDLSFTEVTDEGVKYVSELKALRTLNLMGCNNVGDRALSYLQENCKSLVDLDVSRCQN 225
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVT 458
++S G+ L L LTL C +
Sbjct: 226 VSSVGIAALPTL-----LTLHLCHCS 246
>gi|298360550|gb|ADI77854.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 153/339 (45%), Gaps = 72/339 (21%)
Query: 117 NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+A A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 50 DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN----------- 98
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
NL + S +++TD I LK L KL +D L
Sbjct: 99 --------NLTQINFSNNQLTD--ITPLKNLTKL--------------VDIL-------- 126
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+N Q++D + + +L L L N+ITD + LK LTNL L L S I D
Sbjct: 127 --MNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD-- 178
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ L+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L
Sbjct: 179 ISALSGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLES 233
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L +I+D L NL L + G L D G + L++LT L+L+ N
Sbjct: 234 LIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---IS 286
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 287 NLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|343418611|emb|CCD19670.1| hypothetical protein, conserved in T. vivax [Trypanosoma vivax
Y486]
Length = 840
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 141/492 (28%), Positives = 224/492 (45%), Gaps = 62/492 (12%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+L L + V+D ++ D+ + LS++ S + +TD S L ++ +L+ LD N
Sbjct: 169 TLQELYLPKVY-VDDAFLRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEMLDLN 223
Query: 90 FCIQISDGGLEHLRGLSNLTSL-------------------SFRR---NNAITAQGMKAF 127
CI I GL L GL+ L L RR N+ +
Sbjct: 224 GCIGIV-RGLHELCGLTTLQELYLWQLCVDNAFLRDLTCHERLRRLSLNSCTRITDVSPL 282
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L LDL CT I GL L GL L+ L + W C+ D+ ++ L+ L+ L +
Sbjct: 283 ARMRSLEMLDLNDCTGIVRGLHELCGLTTLQELYL-WQLCVDDAFLRDLTCHERLRRLSL 341
Query: 188 -SCSKVTD-SGIAYLKGLQKLTLLNLEG--------CPVTA--------ACLD-----SL 224
SC+++TD S +A ++ L+ L L + G C +T C+D L
Sbjct: 342 NSCTRITDVSPLARMRSLENLDLNDCTGIVRGLHVLCGLTTLQELCLWQLCVDDAFVRDL 401
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+ L L+LN C + +++ SL++LNL L L GLT L+ L L
Sbjct: 402 TCHERLRRLSLNSCTRITNV-SPLARMRSLEILNLNGCTGIVRGLHVLCGLTTLQELYLW 460
Query: 285 SCGIGDEGLVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+ D L +LT L ++L S T I+D S LA + SL+ L+L+ GL
Sbjct: 461 QLCVDDAFLRDLTCHERLRRLSLNSCTRITDVS--PLARMRSLEMLDLNGCTGIVRGLHV 518
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L LT L L L + D+ L + LR L + V + + SL +L+L
Sbjct: 519 LCGLTTLQELCLAEVPVNDALLRDLTCHERLRELSL-NSCTRITDVSPLARMRSLEMLDL 577
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT-AND 461
+ +C + L + GLT L L + + +A LR L + LR L+L SC ++T +
Sbjct: 578 N-DCTGIVRGLHELCGLTTLQELCLWQLCVDNAFLRDLTCHERLRRLSLNSCTRITDVSP 636
Query: 462 IKRLQSRDLPNL 473
+ R++S ++ +L
Sbjct: 637 LARMRSLEMLDL 648
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 161/367 (43%), Gaps = 32/367 (8%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCS 190
+L LDL CT I GL L GL L+ L + W C+ D+ ++ L+ L+ L + SC+
Sbjct: 3 SLEMLDLNDCTGIVRGLHVLCGLTTLQELCL-WQLCVDDALLRDLTCHERLRELSLNSCT 61
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++TD ++ L ++ L +LNL C L L L +L L L + D +
Sbjct: 62 RITD--VSPLARMRSLEILNLNDCTGIVRGLHVLCGLTTLQELCLANVNVDDAFVRDLTC 119
Query: 251 IGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
L+ L+L ITD + L + +LE LNL+ C GL L GLT L+ + L
Sbjct: 120 HERLRRLSLNSCTRITD--VSPLARMRSLEMLNLNDCTGIVRGLHELCGLTTLQELYLPK 177
Query: 310 TGISDGSLRKLAGLSSLKSLNLDA-RQITDT----------------------GLAALTS 346
+ D LR L L+ L+L++ +ITD GL L
Sbjct: 178 VYVDDAFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEMLDLNGCIGIVRGLHELCG 237
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT L L L+ + ++ L + LR L + V + + SL +L+L+ +
Sbjct: 238 LTTLQELYLWQLCVDNAFLRDLTCHERLRRLSL-NSCTRITDVSPLARMRSLEMLDLN-D 295
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
C + L + GLT L L + + A LR L + LR L+L SC + +
Sbjct: 296 CTGIVRGLHELCGLTTLQELYLWQLCVDDAFLRDLTCHERLRRLSLNSCTRITDVSPLAR 355
Query: 467 SRDLPNL 473
R L NL
Sbjct: 356 MRSLENL 362
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 184/399 (46%), Gaps = 19/399 (4%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT--AQGMKAFAGLINLVKLDL 138
L+ L N C +I++ + L+ + SL N T +G+ GL L +L L
Sbjct: 405 ERLRRLSLNSCTRITN-----VSPLARMRSLEILNLNGCTGIVRGLHVLCGLTTLQELYL 459
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI 197
+ L +L +L L++ C IT D+ PL+ + +L+ L ++ C+ + G+
Sbjct: 460 WQLCVDDAFLRDLTCHERLRRLSLNSCTRIT--DVSPLARMRSLEMLDLNGCTGIV-RGL 516
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L GL L L L PV A L L+ L L+LN C D +++ SL++L
Sbjct: 517 HVLCGLTTLQELCLAEVPVNDALLRDLTCHERLRELSLNSCTRITDV-SPLARMRSLEML 575
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL-SFTGISDGS 316
+L L L GLT L+ L L + + L +LT L ++L S T I+D S
Sbjct: 576 DLNDCTGIVRGLHELCGLTTLQELCLWQLCVDNAFLRDLTCHERLRRLSLNSCTRITDVS 635
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
LA + SL+ L+L+ GL L LT L L L+ + ++ L + LR
Sbjct: 636 --PLARMRSLEMLDLNGCIGIVRGLHELCGLTTLQELYLWQLCVDNAFLRDLTCHERLRR 693
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L + V + + SL +L+L+ +C + L + GLT L L + + A
Sbjct: 694 LSL-NSCTRITDVSPLARMRSLEMLDLN-DCTGIVRGLHELCGLTTLQELYLWQLCVDDA 751
Query: 437 GLRHLKPLKNLRSLTLESC-KVT-ANDIKRLQSRDLPNL 473
LR L + LR L+L SC ++T + + R++S ++ +L
Sbjct: 752 FLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEMLDL 790
>gi|71912406|gb|AAZ53235.1| InlA [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 178/383 (46%), Gaps = 73/383 (19%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
N QL D G L LTNL L+L + I + L
Sbjct: 259 NGNQLKDIGT--------------------------LASLTNLTDLDLANNQISN--LAP 290
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L+GLT L + L IS+ + LAGL++L SL L+ Q+ D ++ +++L LT+L L
Sbjct: 291 LSGLTKLTELKLGANQISN--ISPLAGLTALTSLELNENQLED--ISPISNLKNLTYLTL 346
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+ I+D + + + L+ L ++D + L+SLT N N
Sbjct: 347 YFNNISD--ISPVSSLTKLQRLFFYNNKVSD-----VSSLASLT------NINWLSAGHN 393
Query: 416 LISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 394 QISDLTPLANL----TRITQLGL 412
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112961793|gb|ABI28548.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 112/342 (32%), Positives = 167/342 (48%), Gaps = 52/342 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L LSNLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGL 299
D G + + +L L+L N+I++ L L GLT L L L + I + L LT L
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTAL 215
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLTHLDLF 356
TNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L L +
Sbjct: 216 TNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 265
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+++D + L N N+ L AG I DL+ L
Sbjct: 266 NNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 297
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+N Q++D + + +L L L N+ITD + LK LTNL L L S I D +
Sbjct: 23 MNNNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--IS 76
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 77 ALSGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 131
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 132 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 184
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 185 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|290975580|ref|XP_002670520.1| predicted protein [Naegleria gruberi]
gi|284084080|gb|EFC37776.1| predicted protein [Naegleria gruberi]
Length = 265
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 119/238 (50%), Gaps = 3/238 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I DGG + GL NL +L N+ + G K+ + L L LD+ G+ ++
Sbjct: 13 RIGDGGAMLIGGLKNLITLQIYENH-LGPNGAKSISELKQLTILDISHNRIRDEGVKSIS 71
Query: 153 GLM-KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
M +L +L+I + I++ + PL + NLK L +++ + ++++T L++
Sbjct: 72 EKMDQLTNLDISFVG-ISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDI 130
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
L S+ + L L L + ++ E S++ L VLN+ NEI +E +V+
Sbjct: 131 SYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVY 190
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+ GL L L++ + GIG EG++++ +T L +++ I + +LR L G+ + L
Sbjct: 191 ISGLKQLTELDISNNGIGYEGVLSICKMTQLTKLSIYNNPIPEEALRILDGMKQFRQL 248
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 117/243 (48%), Gaps = 2/243 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L +L IS +++ D G + GL+ L L + + S+S L L L+++
Sbjct: 1 MKQLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHN 60
Query: 239 QLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++ D+G + S K+ L L++ F I+++ LV L + NL+ L C + + ++
Sbjct: 61 RIRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETIS 120
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
+ + +++S+ ++ L+ + + L L L IT + ++ L LT L++
Sbjct: 121 KMKQITELDISYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISE 180
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
I + G Y+ K L L+I G+ GV I ++ LT L++ N + ++ L ++
Sbjct: 181 NEIRNEGVVYISGLKQLTELDISNNGIGYEGVLSICKMTQLTKLSIYNNP-IPEEALRIL 239
Query: 418 SGL 420
G+
Sbjct: 240 DGM 242
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 2/233 (0%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQ 204
GG + + GL L +L I + N + + K +S L L L IS +++ D G+ + + +
Sbjct: 17 GGAMLIGGLKNLITLQI-YENHLGPNGAKSISELKQLTILDISHNRIRDEGVKSISEKMD 75
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
+LT L++ ++ L L + +L L CQLS E SK+ + L++ +N
Sbjct: 76 QLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDISYNLT 135
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS 324
+E L + + L L L GI + ++ L L +N+S I + + ++GL
Sbjct: 136 NNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGLK 195
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
L L++ I G+ ++ +T LT L ++ I + L K R L
Sbjct: 196 QLTELDISNNGIGYEGVLSICKMTQLTKLSIYNNPIPEEALRILDGMKQFRQL 248
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 2/250 (0%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT L++ + + L +L L + L +G + S++ L +L++ N
Sbjct: 1 MKQLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHN 60
Query: 263 EITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321
I DE + + + + L +L++ GI ++GLV L + NL+ + +S ++
Sbjct: 61 RIRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETIS 120
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
+ + L++ + L ++ + L L L IT + K L L I
Sbjct: 121 KMKQITELDISYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISE 180
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
+ + GV +I L LT L++S N + L I +T L L++ N+ I LR L
Sbjct: 181 NEIRNEGVVYISGLKQLTELDISNNGIGYEGVLS-ICKMTQLTKLSIYNNPIPEEALRIL 239
Query: 442 KPLKNLRSLT 451
+K R L
Sbjct: 240 DGMKQFRQLV 249
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
LT LD+ RI D GA + KNL +L+I L G K I +L LT+L++S N +
Sbjct: 4 LTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHN-RI 62
Query: 410 TDKTLELIS-GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
D+ ++ IS + L +L++S I+ GL L +KNL+ L C+++
Sbjct: 63 RDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLST 113
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 39/217 (17%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + I+ + L ++D+S +++ GL+ L + NL+ L F C Q+S E +
Sbjct: 62 IRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDC-QLSTKQAETIS 120
Query: 104 GLSNLTSLSFRR---NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ +T L NN I +K+ + L+KL L +
Sbjct: 121 KMKQITELDISYNLTNNEI----LKSIGEMKQLIKLYLVK-------------------- 156
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
N IT ++ +S L L L IS +++ + G+ Y+ GL++LT L++ +
Sbjct: 157 -----NGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGLKQLTELDISNNGIGYEG 211
Query: 221 LDSLSALGSLFYLNLNRCQLSD------DGCEKFSKI 251
+ S+ + L L++ + + DG ++F ++
Sbjct: 212 VLSICKMTQLTKLSIYNNPIPEEALRILDGMKQFRQL 248
>gi|148607496|gb|ABQ95524.1| InlA [Listeria monocytogenes]
Length = 730
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|298360234|gb|ADI77696.1| internalin A [Listeria monocytogenes]
gi|298360500|gb|ADI77829.1| internalin A [Listeria monocytogenes]
gi|298360708|gb|ADI77933.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 168/345 (48%), Gaps = 48/345 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISSLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHL 353
LT LTNLE +++ L ++ +S+LK+L D + ++ ++SLT L L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNDISDISPVSSLTKLQRL 366
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+ +++D + L N N+ L AG I DL+ L
Sbjct: 367 FFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309
Query: 436 ----AGLRHL-------------KPLKNLRSLT 451
AGL L P+ NL++LT
Sbjct: 310 ISSLAGLTALTNLELNENQLEDISPISNLKNLT 342
>gi|371942142|gb|AEX60883.1| internaline [Listeria monocytogenes]
Length = 790
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|320168281|gb|EFW45180.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 794
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 157/367 (42%), Gaps = 15/367 (4%)
Query: 103 RGLSNL--------TSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLK 152
RGL+ + T+LS N IT+ AF+GL L L L + T I
Sbjct: 44 RGLTTIPSGIPVETTTLSLYSNQ-ITSIPANAFSGLTALATLMLHGNQITSIPANA--FS 100
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L +L + + N IT + L L SL + ++++ GL LT L L
Sbjct: 101 GLTALNTLQL-FSNQITSIPANAFADLAALTSLDLFVNQISSIPANAFTGLSALTQLRLN 159
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+T+ + + L SL L L+ QL+ F+ + +L L LG N +T
Sbjct: 160 TNQITSIPDNVFADLTSLNGLGLSSNQLTVISANAFNGLTALTSLMLGLNPMTVFPSAAF 219
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
LT LESL +++ I LT L SINL I+ + GLS+LK + L
Sbjct: 220 ASLTALESLQMEAGQIASISADTFPDLTALTSINLRDNPITTIAANAFTGLSALKMIYLQ 279
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
IT A T LT LT LDL +I A L + + LT +
Sbjct: 280 NNLITSISATAFTGLTALTALDLSVNQINSLSANTFSGLTALLYVHLGANRLTSIPADAL 339
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L + ++LS+N ++ + + +GLT L L +S++ IT+ + L L L
Sbjct: 340 ARLPAGAGVDLSKNL-ISSVSADEFAGLTALGGLVLSSNLITTIPAGAFASMNALILLAL 398
Query: 453 ESCKVTA 459
++ +T+
Sbjct: 399 DNNTITS 405
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 164/385 (42%), Gaps = 11/385 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHG-GLV 149
QI+ GL+ L +L N IT+ AFA L L LDL + + I
Sbjct: 90 QITSIPANAFSGLTALNTLQLFSNQ-ITSIPANAFADLAALTSLDLFVNQISSIPANAFT 148
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L L +L LN I D+ + LT+L L +S +++T GL LT L
Sbjct: 149 GLSALTQLR-LNTNQITSIPDNV---FADLTSLNGLGLSSNQLTVISANAFNGLTALTSL 204
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L P+T + ++L +L L + Q++ + F + +L +NL N IT
Sbjct: 205 MLGLNPMTVFPSAAFASLTALESLQMEAGQIASISADTFPDLTALTSINLRDNPITTIAA 264
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
GL+ L+ + L + I TGLT L +++LS I+ S +GL++L +
Sbjct: 265 NAFTGLSALKMIYLQNNLITSISATAFTGLTALTALDLSVNQINSLSANTFSGLTALLYV 324
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+L A ++T AL L +DL I+ A L L + +T
Sbjct: 325 HLGANRLTSIPADALARLPAGAGVDLSKNLISSVSADEFAGLTALGGLVLSSNLITTIPA 384
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
+++L LL L N +T + +GLT L L + ++ITS + L L+
Sbjct: 385 GAFASMNALILLALDNN-TITSISANAFTGLTALQYLYLGLNQITSIPVDAFTSLTALQY 443
Query: 450 LTLESCKVTANDIKRLQSRDLPNLV 474
L L+ ++T+ + DL LV
Sbjct: 444 LRLDGNQITS--VPATAFADLTALV 466
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 121/283 (42%), Gaps = 8/283 (2%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL+ LTSL N +T AFA L L L +E L L S+N
Sbjct: 195 FNGLTALTSLMLGLN-PMTVFPSAAFASLTALESLQMEAGQIASISADTFPDLTALTSIN 253
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++ N IT +GL+ LK + + + +T GL LT L+L + +
Sbjct: 254 LRD-NPITTIAANAFTGLSALKMIYLQNNLITSISATAFTGLTALTALDLSVNQINSLSA 312
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
++ S L +L Y++L +L+ + +++ + ++L N I+ GLT L L
Sbjct: 313 NTFSGLTALLYVHLGANRLTSIPADALARLPAGAGVDLSKNLISSVSADEFAGLTALGGL 372
Query: 282 NLDS---CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L S I ++ L L N + T IS + GL++L+ L L QIT
Sbjct: 373 VLSSNLITTIPAGAFASMNALILLALDNNTITSISANAFT---GLTALQYLYLGLNQITS 429
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
+ A TSLT L +L L G +IT A + L L + G
Sbjct: 430 IPVDAFTSLTALQYLRLDGNQITSVPATAFADLTALVGLTLNG 472
>gi|119603704|gb|EAW83298.1| F-box and leucine-rich repeat protein 13, isoform CRA_a [Homo
sapiens]
Length = 735
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 116/429 (27%), Positives = 196/429 (45%), Gaps = 70/429 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + P D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 247 LQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 306
Query: 92 IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG + A G+++L
Sbjct: 307 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDN 366
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK+ +E+C+RI H + L KL + + +TD+ K +
Sbjct: 367 CVKVGIEKCSRITSLVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYP 426
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-----ACLDSLSALGSLFYLN 234
NL + ++ C +TDS + L L++LT+LNL C LD +++ + LN
Sbjct: 427 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRIGDMGLKQFLDGPASM-RIRELN 485
Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
L+ C +LSD K S + C NL L+L +C + +G
Sbjct: 486 LSNCVRLSDASVMKLS----------------ERC-------PNLNYLSLRNCEHLTAQG 522
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGL 350
+ + + +L SI+LS T IS+ L L+ LK L++ + +ITD G+ A S L
Sbjct: 523 IGYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLIL 582
Query: 351 THLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQN 406
HLD+ + ++++D L + NL SL I G +TD+ ++ + L +L++S
Sbjct: 583 EHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGC 642
Query: 407 CNLTDKTLE 415
LTD+ LE
Sbjct: 643 VLLTDQILE 651
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 10/188 (5%)
Query: 83 LQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
++ L+ + C+++SD + L NL LS R +TAQG+ + +LV +DL
Sbjct: 481 IRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGT 540
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIA 198
+ GL L KL+ L++ C ITD ++ S L L+ L +S CS+++D I
Sbjct: 541 DISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLI-LEHLDVSYCSQLSDMIIK 599
Query: 199 YLK-GLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIG--S 253
L LT L++ GCP +T + ++ LSA L L+++ C L D + +IG
Sbjct: 600 ALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGCVLLTDQILEDLQIGCKQ 659
Query: 254 LKVLNLGF 261
L++L + +
Sbjct: 660 LRILKMQY 667
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+DLSG+D+++ GL L L+ L + C +I+D G++ +F +++
Sbjct: 531 SLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQ-----------AFCKSS 579
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKP 175
I L LD+ C+++ ++ + + L SL+I C ITDS M+
Sbjct: 580 LI-------------LEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEM 626
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + L L IS C +TD + L+ G ++L +L ++ C
Sbjct: 627 LSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYC 668
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 133/298 (44%), Gaps = 44/298 (14%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV--LNLGFNEITD 266
LN GC + S+S +L LN++ C D + G V LNL IT+
Sbjct: 226 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITN 285
Query: 267 ECLVHL-KGLTNLESLNLDSC-GIGDEGLVNL---TGLTNLESINLS-FTGISDGSLRKL 320
+ L + NL++L+L C D+GL L G L ++LS T IS R +
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 321 AG---------LSSLKSLNLDARQITDTGLAALTSL--TGLTHLD--LFGA--------- 358
A ++ + +L + ++ + +TSL TG H+ F A
Sbjct: 346 ANSCTGIMHLTINDMPTLTDNCVKVGIEKCSRITSLVFTGAPHISDCTFRALSACKLRKI 405
Query: 359 ------RITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
R+TD+ ++ +N+ NL + + G+TD+ ++ + L LT+LNL+ +
Sbjct: 406 RFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRIG 465
Query: 411 DKTL-ELISGLTGL--VSLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCK-VTANDI 462
D L + + G + LN+SN R++ A + L + NL L+L +C+ +TA I
Sbjct: 466 DMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGI 523
>gi|223698976|gb|ACN19224.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|167861940|gb|ACA05669.1| InlA [Listeria monocytogenes]
gi|167861954|gb|ACA05676.1| InlA [Listeria monocytogenes]
gi|194239400|emb|CAQ76840.1| internalin A [Listeria monocytogenes]
gi|298360640|gb|ADI77899.1| truncated internalin A [Listeria monocytogenes]
gi|298360688|gb|ADI77923.1| truncated internalin A [Listeria monocytogenes]
gi|443428860|gb|AGC92229.1| truncated internalin A [Listeria monocytogenes]
gi|443428878|gb|AGC92238.1| truncated internalin A [Listeria monocytogenes]
Length = 684
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|371942126|gb|AEX60875.1| internaline [Listeria monocytogenes]
Length = 790
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|313485070|gb|ADR53006.1| InlA [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|219821387|gb|ACL37836.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 108/332 (32%), Positives = 162/332 (48%), Gaps = 50/332 (15%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
D + L KLT NLE T + ++ LG +L L+LN QL D G +
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 213
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLSF 309
+ +L L+L N+I++ L L GLT L L L + I + L LT LTNLE
Sbjct: 214 LTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE------ 265
Query: 310 TGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
+++ L ++ +S+LK+ L L I+D ++ ++SLT L L + +++D +
Sbjct: 266 --LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSDVSS- 320
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L N N+ L AG I DL+ L
Sbjct: 321 -LANLTNINWLS--------AGHNQISDLTPL 343
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 111/217 (51%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+N Q++D + + +L L L N+ITD + LK LTNL L L S I D +
Sbjct: 69 MNNNQITD--ISPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--IS 122
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 123 ALSGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 177
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 178 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 230
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 231 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 262
>gi|340052077|emb|CBY84390.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|404412528|ref|YP_006698115.1| internalin A [Listeria monocytogenes SLCC7179]
gi|298360000|gb|ADI77579.1| internalin A [Listeria monocytogenes]
gi|298360676|gb|ADI77917.1| internalin A [Listeria monocytogenes]
gi|404238227|emb|CBY59628.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC7179]
gi|443428842|gb|AGC92220.1| internalin A [Listeria monocytogenes]
gi|443428848|gb|AGC92223.1| internalin A [Listeria monocytogenes]
gi|443428858|gb|AGC92228.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|56797877|emb|CAH04900.1| internalin A [Listeria monocytogenes]
Length = 792
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 169/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LKD + L + N QI+D + L SNLT L+ NN
Sbjct: 92 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANSSNLTGLTLF-NNQ 145
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 146 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 197
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 198 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 250
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 251 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 306
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 307 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 356
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 357 RLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 393
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T +S + A+ MK G N+ + DL++ T +
Sbjct: 16 WINTSNGTNAQAATITQDTPISQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 75
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 76 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 114
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + +L L L N+ITD
Sbjct: 115 --------------VDIL----------MNNNQIAD--ITPLANSSNLTGLTLFNNQITD 148
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 149 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 201
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 202 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 257
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 258 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 307
Query: 447 LRSLT 451
L +LT
Sbjct: 308 LTALT 312
>gi|325111037|ref|YP_004272105.1| hypothetical protein Plabr_4512 [Planctomyces brasiliensis DSM
5305]
gi|324971305|gb|ADY62083.1| hypothetical protein Plabr_4512 [Planctomyces brasiliensis DSM
5305]
Length = 407
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 145/290 (50%), Gaps = 12/290 (4%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ +S S ++D + LK +L +L L +T + LD LS++ SL L+L + D+
Sbjct: 103 VDLSLSNISDDSLDSLKDFNRLEVLILAHTRITGSRLDQLSSITSLHTLDLTAIEFDDES 162
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLD-SCGIGDEGLVNLTGLTNL 302
+ + L+ L + ++++++ L + L SL+L G+ + L +L + L
Sbjct: 163 VPSLASLRQLQRLKVPTSKLSEDGFALLCTRMPFLRSLDLSGRRGVANSWLTHLAKMPRL 222
Query: 303 ESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
+ +SF I D ++ LAGL +LK L+L+ IT AAL +LT L L L A T
Sbjct: 223 NVLGVSFAKNIDDDAIPLLAGLPALKWLSLEGTSITGMFPAALGNLTNLDTLSL--AHCT 280
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTD----AGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+ L + LRSL+ L D +K ++ +S L + L +N NLTD L+ +
Sbjct: 281 FNAPQTLESLSKLRSLKQLN--LNDCKNITSLKFLRGMSHLEAIGL-KNTNLTDAILKEL 337
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
L ++++ RI + + LK L++++L ++ +++I ++S
Sbjct: 338 QYCLQLKYVDLTRCRIGKETISTISQLKLLQTISLSGTQIDSDNIIPIRS 387
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 145/319 (45%), Gaps = 41/319 (12%)
Query: 26 EAFRDCALQDL-CL-GQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
E++RD + +L C +P + + + V Q + VDLS S+++D L LKD + L
Sbjct: 68 ESYRDASTLELDCRRAHFPDGSLELLKVFEKQT---VIVDLSLSNISDDSLDSLKDFNRL 124
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA--QGMKAFAGLINLVKLDLER- 140
+ L +I+ L+ L +++L +L AI + + + A L L +L +
Sbjct: 125 EVLILAHT-RITGSRLDQLSSITSLHTLDL---TAIEFDDESVPSLASLRQLQRLKVPTS 180
Query: 141 ----------CTRI---------------HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
CTR+ + L +L + +L L + + I D +
Sbjct: 181 KLSEDGFALLCTRMPFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPL 240
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLN 234
L+GL LK L + + +T A L L L L+L C A L+SLS L SL LN
Sbjct: 241 LAGLPALKWLSLEGTSITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQLN 300
Query: 235 LNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
LN C+ + KF + + L+ + L +TD L L+ L+ ++L C IG E +
Sbjct: 301 LNDCK--NITSLKFLRGMSHLEAIGLKNTNLTDAILKELQYCLQLKYVDLTRCRIGKETI 358
Query: 294 VNLTGLTNLESINLSFTGI 312
++ L L++I+LS T I
Sbjct: 359 STISQLKLLQTISLSGTQI 377
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 29/218 (13%)
Query: 59 LLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+DLSG V +S L HL L L +F I D + L GL L LS
Sbjct: 197 LRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPLLAGLPALKWLSLE-GT 255
Query: 118 AITAQGMKAFAGLINLVKLDLERCT-RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+IT A L NL L L CT L +L L L+ LN+ C IT +K L
Sbjct: 256 SITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQLNLNDCKNITS--LKFL 313
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
G+++L+++ + + +TD A LK LQ CL L Y++L
Sbjct: 314 RGMSHLEAIGLKNTNLTD---AILKELQ--------------YCL-------QLKYVDLT 349
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
RC++ + S++ L+ ++L +I + ++ ++
Sbjct: 350 RCRIGKETISTISQLKLLQTISLSGTQIDSDNIIPIRS 387
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 121/262 (46%), Gaps = 17/262 (6%)
Query: 142 TRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
TRI G L L + L +L++ D + L+ L L+ L++ SK+++ G A L
Sbjct: 132 TRITGSRLDQLSSITSLHTLDLTAIE-FDDESVPSLASLRQLQRLKVPTSKLSEDGFALL 190
Query: 201 -KGLQKLTLLNLEGCPVTA-------ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
+ L L+L G A A + L+ LG F N++ DD + +
Sbjct: 191 CTRMPFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNID-----DDAIPLLAGLP 245
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGLTNLESINLSFTG 311
+LK L+L IT L LTNL++L+L C + L +L+ L +L+ +NL+
Sbjct: 246 ALKWLSLEGTSITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQLNLNDCK 305
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
+ SL+ L G+S L+++ L +TD L L L ++DL RI + +
Sbjct: 306 -NITSLKFLRGMSHLEAIGLKNTNLTDAILKELQYCLQLKYVDLTRCRIGKETISTISQL 364
Query: 372 KNLRSLEICGGGLTDAGVKHIK 393
K L+++ + G + + I+
Sbjct: 365 KLLQTISLSGTQIDSDNIIPIR 386
>gi|294358395|gb|ADE73850.1| InlA [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|194326157|emb|CAQ77237.1| internalin A [Listeria monocytogenes]
gi|290350820|dbj|BAI78331.1| internalin A [Listeria monocytogenes]
gi|290350836|dbj|BAI78339.1| internalin A [Listeria monocytogenes]
gi|298360124|gb|ADI77641.1| internalin A [Listeria monocytogenes]
gi|298360394|gb|ADI77776.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|371942138|gb|AEX60881.1| internaline [Listeria monocytogenes]
Length = 789
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|298359722|gb|ADI77440.1| truncated internalin A [Listeria monocytogenes]
gi|298359752|gb|ADI77455.1| truncated internalin A [Listeria monocytogenes]
gi|298359762|gb|ADI77460.1| truncated internalin A [Listeria monocytogenes]
gi|298359812|gb|ADI77485.1| truncated internalin A [Listeria monocytogenes]
gi|298359814|gb|ADI77486.1| truncated internalin A [Listeria monocytogenes]
gi|298359858|gb|ADI77508.1| truncated internalin A [Listeria monocytogenes]
gi|298359886|gb|ADI77522.1| truncated internalin A [Listeria monocytogenes]
gi|298359900|gb|ADI77529.1| truncated internalin A [Listeria monocytogenes]
gi|298359906|gb|ADI77532.1| truncated internalin A [Listeria monocytogenes]
gi|298359912|gb|ADI77535.1| truncated internalin A [Listeria monocytogenes]
gi|298359944|gb|ADI77551.1| truncated internalin A [Listeria monocytogenes]
gi|298359980|gb|ADI77569.1| truncated internalin A [Listeria monocytogenes]
gi|298359990|gb|ADI77574.1| truncated internalin A [Listeria monocytogenes]
gi|298359992|gb|ADI77575.1| truncated internalin A [Listeria monocytogenes]
gi|298359994|gb|ADI77576.1| truncated internalin A [Listeria monocytogenes]
gi|298360008|gb|ADI77583.1| truncated internalin A [Listeria monocytogenes]
gi|298360026|gb|ADI77592.1| truncated internalin A [Listeria monocytogenes]
gi|298360060|gb|ADI77609.1| truncated internalin A [Listeria monocytogenes]
gi|298360078|gb|ADI77618.1| truncated internalin A [Listeria monocytogenes]
gi|298360082|gb|ADI77620.1| truncated internalin A [Listeria monocytogenes]
gi|298360096|gb|ADI77627.1| truncated internalin A [Listeria monocytogenes]
gi|298360142|gb|ADI77650.1| truncated internalin A [Listeria monocytogenes]
gi|298360144|gb|ADI77651.1| truncated internalin A [Listeria monocytogenes]
gi|298360146|gb|ADI77652.1| truncated internalin A [Listeria monocytogenes]
gi|298360160|gb|ADI77659.1| truncated internalin A [Listeria monocytogenes]
gi|298360192|gb|ADI77675.1| truncated internalin A [Listeria monocytogenes]
gi|298360252|gb|ADI77705.1| truncated internalin A [Listeria monocytogenes]
gi|298360274|gb|ADI77716.1| truncated internalin A [Listeria monocytogenes]
gi|298360276|gb|ADI77717.1| truncated internalin A [Listeria monocytogenes]
gi|298360296|gb|ADI77727.1| truncated internalin A [Listeria monocytogenes]
gi|298360304|gb|ADI77731.1| truncated internalin A [Listeria monocytogenes]
gi|298360316|gb|ADI77737.1| truncated internalin A [Listeria monocytogenes]
gi|298360320|gb|ADI77739.1| truncated internalin A [Listeria monocytogenes]
gi|298360336|gb|ADI77747.1| truncated internalin A [Listeria monocytogenes]
gi|298360342|gb|ADI77750.1| truncated internalin A [Listeria monocytogenes]
gi|298360348|gb|ADI77753.1| truncated internalin A [Listeria monocytogenes]
gi|298360374|gb|ADI77766.1| truncated internalin A [Listeria monocytogenes]
gi|298360380|gb|ADI77769.1| truncated internalin A [Listeria monocytogenes]
gi|298360404|gb|ADI77781.1| truncated internalin A [Listeria monocytogenes]
gi|298360414|gb|ADI77786.1| truncated internalin A [Listeria monocytogenes]
gi|298360426|gb|ADI77792.1| truncated internalin A [Listeria monocytogenes]
gi|298360458|gb|ADI77808.1| truncated internalin A [Listeria monocytogenes]
gi|298360464|gb|ADI77811.1| truncated internalin A [Listeria monocytogenes]
gi|298360488|gb|ADI77823.1| truncated internalin A [Listeria monocytogenes]
gi|298360492|gb|ADI77825.1| truncated internalin A [Listeria monocytogenes]
gi|298360518|gb|ADI77838.1| truncated internalin A [Listeria monocytogenes]
gi|298360538|gb|ADI77848.1| truncated internalin A [Listeria monocytogenes]
gi|298360562|gb|ADI77860.1| truncated internalin A [Listeria monocytogenes]
gi|298360594|gb|ADI77876.1| truncated internalin A [Listeria monocytogenes]
gi|298360616|gb|ADI77887.1| truncated internalin A [Listeria monocytogenes]
gi|298360654|gb|ADI77906.1| truncated internalin A [Listeria monocytogenes]
gi|298360660|gb|ADI77909.1| truncated internalin A [Listeria monocytogenes]
gi|298360668|gb|ADI77913.1| truncated internalin A [Listeria monocytogenes]
gi|298360690|gb|ADI77924.1| truncated internalin A [Listeria monocytogenes]
gi|298360696|gb|ADI77927.1| truncated internalin A [Listeria monocytogenes]
gi|298360720|gb|ADI77939.1| truncated internalin A [Listeria monocytogenes]
gi|443428784|gb|AGC92191.1| truncated internalin A [Listeria monocytogenes]
gi|443428786|gb|AGC92192.1| truncated internalin A [Listeria monocytogenes]
gi|443428790|gb|AGC92194.1| truncated internalin A [Listeria monocytogenes]
gi|443428794|gb|AGC92196.1| truncated internalin A [Listeria monocytogenes]
gi|443428808|gb|AGC92203.1| truncated internalin A [Listeria monocytogenes]
gi|443428810|gb|AGC92204.1| truncated internalin A [Listeria monocytogenes]
gi|443428828|gb|AGC92213.1| truncated internalin A [Listeria monocytogenes]
gi|443428866|gb|AGC92232.1| truncated internalin A [Listeria monocytogenes]
gi|443428874|gb|AGC92236.1| truncated internalin A [Listeria monocytogenes]
gi|443428876|gb|AGC92237.1| truncated internalin A [Listeria monocytogenes]
Length = 699
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|22347572|gb|AAM95931.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 108/332 (32%), Positives = 162/332 (48%), Gaps = 50/332 (15%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 57 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 110
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 111 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 164
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
D + L KLT NLE T + ++ LG +L L+LN QL D G +
Sbjct: 165 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 215
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLSF 309
+ +L L+L N+I++ L L GLT L L L + I + L LT LTNLE
Sbjct: 216 LTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE------ 267
Query: 310 TGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
+++ L ++ +S+LK+ L L I+D ++ ++SLT L L + +++D +
Sbjct: 268 --LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSDVSS- 322
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L N N+ L AG I DL+ L
Sbjct: 323 -LANLTNINWLS--------AGHNQISDLTPL 345
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 111/217 (51%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+N Q++D + + +L L L N+ITD + LK LTNL L L S I D +
Sbjct: 71 MNNNQITD--ISPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--IS 124
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 125 ALSGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 179
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 180 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 232
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 233 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 264
>gi|130774793|gb|ABO32411.1| InlA [Listeria monocytogenes]
gi|194239384|emb|CAQ76832.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|167861888|gb|ACA05643.1| InlA [Listeria monocytogenes]
gi|194326163|emb|CAQ77240.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|130774819|gb|ABO32422.1| InlA [Listeria monocytogenes]
gi|167861894|gb|ACA05646.1| InlA [Listeria monocytogenes]
gi|167861946|gb|ACA05672.1| InlA [Listeria monocytogenes]
gi|167861948|gb|ACA05673.1| InlA [Listeria monocytogenes]
gi|194239402|emb|CAQ76841.1| internalin A [Listeria monocytogenes]
gi|298360052|gb|ADI77605.1| internalin A [Listeria monocytogenes]
gi|298360164|gb|ADI77661.1| internalin A [Listeria monocytogenes]
gi|298360372|gb|ADI77765.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|22347554|gb|AAM95922.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 256
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 257 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 306
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 307 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 345
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 37 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 90 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|124009437|ref|ZP_01694114.1| leucine-rich-repeat protein [Microscilla marina ATCC 23134]
gi|123984985|gb|EAY24943.1| leucine-rich-repeat protein [Microscilla marina ATCC 23134]
Length = 966
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 108/219 (49%), Gaps = 34/219 (15%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
E L L GLT L++LNL S I D + L +E +NLS I+D L LAGL SL
Sbjct: 100 EDLQPLVGLTQLQTLNLSSNHISDIKV--LANFPTMEKLNLSQNTIAD--LSPLAGLESL 155
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
K+LNL+ Q D G L SL LT L L +++D A L+ KNLRSL + L D
Sbjct: 156 KTLNLNWNQTLDLG--TLPSLPNLTTLYLNSCQLSDIQA--LKQHKNLRSLYLRSNQLAD 211
Query: 387 AGV--------------KHIKDLSSL----TLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
HI+D S L TL LS N N K L ++GL L L +
Sbjct: 212 LSPLTNLETLAYLRLDENHIEDFSPLASLQTLEALSLNKNRI-KDLAPLAGLITLRKLYL 270
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ ++I S LKPL L+ LT+ +T N I+ +Q+
Sbjct: 271 NENKIIS-----LKPLAKLQKLTV--LTLTDNKIQDVQA 302
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 134/295 (45%), Gaps = 55/295 (18%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
T +D+ PL+GL +LK+L ++ ++ D G +L +L
Sbjct: 142 TIADLSPLAGLESLKTLNLNWNQTLDLG--------------------------TLPSLP 175
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES---LNLDS 285
+L L LN CQLSD + + +L+ L L N++ D L LTNLE+ L LD
Sbjct: 176 NLTTLYLNSCQLSD--IQALKQHKNLRSLYLRSNQLAD-----LSPLTNLETLAYLRLDE 228
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
I D L L LE+++L+ I D L LAGL +L+ L L+ +I L L
Sbjct: 229 NHIED--FSPLASLQTLEALSLNKNRIKD--LAPLAGLITLRKLYLNENKI--ISLKPLA 282
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L LT L L +I D A L + L +L++ + D V ++ L+ LT L L
Sbjct: 283 KLQKLTVLTLTDNKIQDVQA--LHSLLQLDTLDLSQNQIMD--VSPLQSLARLTGLGLGV 338
Query: 406 NCNLTDKTLELISGLTGLVSLNV---SNSRITSAGLRHLKPLKNLRSLTLESCKV 457
N ++ I L GL+ L + +N++IT + L L L LE+ +
Sbjct: 339 N------QIQDICPLAGLIELKILVLANNQITELPVHFFDKLHQLLVLELENNPI 387
>gi|371942074|gb|AEX60849.1| internaline [Listeria monocytogenes]
gi|371942102|gb|AEX60863.1| internaline [Listeria monocytogenes]
gi|371942114|gb|AEX60869.1| internaline [Listeria monocytogenes]
gi|371942124|gb|AEX60874.1| internaline [Listeria monocytogenes]
Length = 790
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|313485072|gb|ADR53007.1| InlA [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|223698868|gb|ACN19152.1| internalin A [Listeria monocytogenes]
gi|223698898|gb|ACN19172.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|443428838|gb|AGC92218.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 365 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|290350830|dbj|BAI78336.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LTPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 365 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 164/367 (44%), Gaps = 76/367 (20%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQN--CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
G + L++LT L+L+ N NLT +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQISNLTP-----LSGLTKLTELKLGANQIS-----NISPL 313
Query: 445 KNLRSLT 451
L +LT
Sbjct: 314 AGLTALT 320
>gi|290971190|ref|XP_002668408.1| predicted protein [Naegleria gruberi]
gi|284081802|gb|EFC35664.1| predicted protein [Naegleria gruberi]
Length = 286
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 83/155 (53%), Gaps = 1/155 (0%)
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
++ + L S+++S I + ++ + L SLN+ QI+D G ++ + L L++
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
RI D GA Y+ K L SL + + D G K I ++ LT LN+ +N ++ + +
Sbjct: 189 GSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKN-RISVEGAK 247
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
IS + L+ LN+ ++RI+ G +++ +K L SL
Sbjct: 248 YISEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 1/164 (0%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
E + + + L SL++ IG EG ++ + L S+N+ + ISD + ++ + L
Sbjct: 124 ERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQL 183
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
LN+ + +I D G ++ + LT L++ I D GA ++ K L SL + ++
Sbjct: 184 ILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISV 243
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
G K+I ++ L LLN+ N ++D+ + IS + L SL+ +N
Sbjct: 244 EGAKYISEMKQLILLNIGSN-RISDEGAKYISEMKQLTSLHTTN 286
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 82/154 (53%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L L+++ + +G + S++ L LN+ +N+I+D+ ++ + L LN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
S IGDEG ++ + L S+N+S I D + ++ + L SLN+ +I+ G
Sbjct: 189 GSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKY 248
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
++ + L L++ RI+D GA Y+ K L SL
Sbjct: 249 ISEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT LD+ I GA Y+ K L SL I ++D G K+I ++ L LLN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
N + D+ + IS + L SLNVSN+ I G + + +K L SL + +++ K
Sbjct: 189 GSN-RIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAK 247
Query: 464 RL 465
+
Sbjct: 248 YI 249
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 4/166 (2%)
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ + +K + + L LD+ + G + + +L SLNI + N I+D K +S +
Sbjct: 122 SRERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNI-YYNQISDKGAKYISEM 180
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L L I +++ D G Y+ +++LT LN+ + +S + L LN+ + +
Sbjct: 181 KQLILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNR 240
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTNLESLN 282
+S +G + S++ L +LN+G N I+DE + +K LT+L + N
Sbjct: 241 ISVEGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLHTTN 286
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 78/158 (49%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K +S + L SL IS + + G Y+ +++LT LN+ ++ +S + L
Sbjct: 126 VKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLIL 185
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN+ ++ D+G + S++ L LN+ NEI DE + + L SLN+ I EG
Sbjct: 186 LNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEG 245
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
++ + L +N+ ISD + ++ + L SL+
Sbjct: 246 AKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLH 283
>gi|223698643|gb|ACN19002.1| internalin A [Listeria monocytogenes]
gi|223698646|gb|ACN19004.1| internalin A [Listeria monocytogenes]
gi|223698670|gb|ACN19020.1| internalin A [Listeria monocytogenes]
gi|223698673|gb|ACN19022.1| internalin A [Listeria monocytogenes]
gi|223698718|gb|ACN19052.1| internalin A [Listeria monocytogenes]
gi|223698754|gb|ACN19076.1| internalin A [Listeria monocytogenes]
gi|223698757|gb|ACN19078.1| internalin A [Listeria monocytogenes]
gi|223698796|gb|ACN19104.1| internalin A [Listeria monocytogenes]
gi|223698826|gb|ACN19124.1| internalin A [Listeria monocytogenes]
gi|223698829|gb|ACN19126.1| internalin A [Listeria monocytogenes]
gi|223698832|gb|ACN19128.1| internalin A [Listeria monocytogenes]
gi|223698862|gb|ACN19148.1| internalin A [Listeria monocytogenes]
gi|223698895|gb|ACN19170.1| internalin A [Listeria monocytogenes]
gi|223698925|gb|ACN19190.1| internalin A [Listeria monocytogenes]
gi|223698928|gb|ACN19192.1| internalin A [Listeria monocytogenes]
gi|223698931|gb|ACN19194.1| internalin A [Listeria monocytogenes]
gi|223698934|gb|ACN19196.1| internalin A [Listeria monocytogenes]
gi|223698937|gb|ACN19198.1| internalin A [Listeria monocytogenes]
gi|223698940|gb|ACN19200.1| internalin A [Listeria monocytogenes]
gi|223698943|gb|ACN19202.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 15 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 69 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 229
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 230 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 279
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 280 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|38154342|gb|AAR12158.1| internalin A [Listeria monocytogenes]
Length = 728
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 256
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 257 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 306
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 307 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 345
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 37 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 90 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|371942116|gb|AEX60870.1| internaline [Listeria monocytogenes]
Length = 789
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|371942104|gb|AEX60864.1| internaline [Listeria monocytogenes]
Length = 790
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|298360230|gb|ADI77694.1| internalin A [Listeria monocytogenes]
gi|298360588|gb|ADI77873.1| internalin A [Listeria monocytogenes]
gi|298360606|gb|ADI77882.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 365 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|150371858|dbj|BAF65718.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LGSLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 161/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GL +L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLISLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LGSLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 91/207 (43%), Gaps = 51/207 (24%)
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
LG +TD V L + +L D GI + + + L NL IN S ++D +
Sbjct: 61 LGKTNVTDT--VSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTD--IT 114
Query: 319 KLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
L L+ L + ++ QI D T LA LT+LTGLT LF +ITD L+N NL L
Sbjct: 115 PLKNLTKLVDILMNNNQIADITPLANLTNLTGLT---LFNNQITDLDP--LKNLTNLNRL 169
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
E+ ++D IS L+GL+SL + S G
Sbjct: 170 ELSSNTISD------------------------------ISALSGLISL-----QQLSFG 194
Query: 438 --LRHLKPLKNLRSLTLESCKVTANDI 462
+ LKPL NL TLE +++N +
Sbjct: 195 NQVTDLKPLANLT--TLERLDISSNKV 219
>gi|38154344|gb|AAR12159.1| internalin A [Listeria monocytogenes]
Length = 685
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 256
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 257 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 306
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 307 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 345
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 37 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 90 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|371942084|gb|AEX60854.1| internaline [Listeria monocytogenes]
Length = 790
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|290350826|dbj|BAI78334.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 365 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|167862032|gb|ACA05715.1| InlA [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|223698892|gb|ACN19168.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|22347556|gb|AAM95923.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 256
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 257 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 306
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 307 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 345
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 37 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 90 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|371942136|gb|AEX60880.1| internaline [Listeria monocytogenes]
Length = 789
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|130774825|gb|ABO32425.1| InlA [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|148607488|gb|ABQ95520.1| InlA [Listeria monocytogenes]
Length = 797
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|47096455|ref|ZP_00234048.1| internalin A precursor [Listeria monocytogenes str. 1/2a F6854]
gi|254913677|ref|ZP_05263689.1| internalin A [Listeria monocytogenes J2818]
gi|254937992|ref|ZP_05269689.1| internalin A [Listeria monocytogenes F6900]
gi|386046091|ref|YP_005964423.1| internalin A [Listeria monocytogenes J0161]
gi|47015176|gb|EAL06116.1| internalin A precursor [Listeria monocytogenes str. 1/2a F6854]
gi|194239410|emb|CAQ76845.1| internalin A [Listeria monocytogenes]
gi|223006792|gb|ACM69353.1| internalin A [Listeria monocytogenes]
gi|223006794|gb|ACM69354.1| internalin A [Listeria monocytogenes]
gi|258610604|gb|EEW23212.1| internalin A [Listeria monocytogenes F6900]
gi|293591690|gb|EFG00025.1| internalin A [Listeria monocytogenes J2818]
gi|298359952|gb|ADI77555.1| internalin A [Listeria monocytogenes]
gi|298359956|gb|ADI77557.1| internalin A [Listeria monocytogenes]
gi|298359986|gb|ADI77572.1| internalin A [Listeria monocytogenes]
gi|298360086|gb|ADI77622.1| internalin A [Listeria monocytogenes]
gi|298360130|gb|ADI77644.1| internalin A [Listeria monocytogenes]
gi|298360206|gb|ADI77682.1| internalin A [Listeria monocytogenes]
gi|298360572|gb|ADI77865.1| internalin A [Listeria monocytogenes]
gi|298360644|gb|ADI77901.1| internalin A [Listeria monocytogenes]
gi|345533082|gb|AEO02523.1| internalin A [Listeria monocytogenes J0161]
gi|443428774|gb|AGC92186.1| internalin A [Listeria monocytogenes]
gi|443428776|gb|AGC92187.1| internalin A [Listeria monocytogenes]
gi|443428868|gb|AGC92233.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 365 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|434385223|ref|YP_007095834.1| Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus
PCC 6605]
gi|428016213|gb|AFY92307.1| Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus
PCC 6605]
Length = 362
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 142/296 (47%), Gaps = 56/296 (18%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
SD++P++ LTNL+ L + +TD + +A LK L L + + L L LGS
Sbjct: 98 SDLRPIASLTNLRKLSLYSHNITDLTPLANLKQLDALV--------INSNKLTDLKPLGS 149
Query: 230 LFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L LN + + +K+ +LK L L ++ I D + +K LT L ++ I
Sbjct: 150 LNNLNDLGLLGRNIVNIKPIAKLTNLKKLTLWYSSIQD--IKAVKNLTQLTEVSFIDTKI 207
Query: 289 GD-EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
D L NL LT LE N T I R L+GL++LK + L+ QI++ + L L
Sbjct: 208 ADLSPLANLKSLTTLEVTNSKVTDI-----RALSGLTNLKRIVLNNNQISN--IQPLARL 260
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
T L L+L NF + +L G L+SLT +NLS N
Sbjct: 261 TNLKSLNL--------------NFNRISNLTPLAG------------LTSLTGINLSDN- 293
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+ D ++ I+ LT LV LN++N++IT ++KPL L+ LE+ V+ N +K
Sbjct: 294 QIVD--IQPIAALTQLVGLNLNNNKIT-----NIKPLAKLQK--LETLVVSKNKVK 340
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 125/261 (47%), Gaps = 21/261 (8%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
IQI D L LS T L ++ A L NL KL L + +L
Sbjct: 69 IQIPDCRAAALE-LSQRTELLTSSPTPADISDLRPIASLTNLRKLSLY-----SHNITDL 122
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLN 210
L L+ L+ N +D+KPL L NL L + + + IA L L+KLTL
Sbjct: 123 TPLANLKQLDALVINSNKLTDLKPLGSLNNLNDLGLLGRNIVNIKPIAKLTNLKKLTLWY 182
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ A + +L+ L + +++ LS + + SL L + +++TD +
Sbjct: 183 SSIQDIKA--VKNLTQLTEVSFIDTKIADLS-----PLANLKSLTTLEVTNSKVTD--IR 233
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L GLTNL+ + L++ I + + L LTNL+S+NL+F IS+ L LAGL+SL +N
Sbjct: 234 ALSGLTNLKRIVLNNNQISN--IQPLARLTNLKSLNLNFNRISN--LTPLAGLTSLTGIN 289
Query: 331 LDARQITDT-GLAALTSLTGL 350
L QI D +AALT L GL
Sbjct: 290 LSDNQIVDIQPIAALTQLVGL 310
>gi|298359950|gb|ADI77554.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 365 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|386052707|ref|YP_005970265.1| internalin A [Listeria monocytogenes Finland 1998]
gi|130774801|gb|ABO32414.1| InlA [Listeria monocytogenes]
gi|130774805|gb|ABO32415.1| InlA [Listeria monocytogenes]
gi|130774807|gb|ABO32416.1| InlA [Listeria monocytogenes]
gi|150371724|dbj|BAF65677.1| internalin A [Listeria monocytogenes]
gi|150371780|dbj|BAF65679.1| internalin A [Listeria monocytogenes]
gi|150371784|dbj|BAF65681.1| internalin A [Listeria monocytogenes]
gi|150371788|dbj|BAF65683.1| internalin A [Listeria monocytogenes]
gi|150371790|dbj|BAF65684.1| internalin A [Listeria monocytogenes]
gi|150371792|dbj|BAF65685.1| internalin A [Listeria monocytogenes]
gi|150371798|dbj|BAF65688.1| internalin A [Listeria monocytogenes]
gi|150371802|dbj|BAF65690.1| internalin A [Listeria monocytogenes]
gi|150371808|dbj|BAF65693.1| internalin A [Listeria monocytogenes]
gi|150371814|dbj|BAF65696.1| internalin A [Listeria monocytogenes]
gi|150371818|dbj|BAF65698.1| internalin A [Listeria monocytogenes]
gi|150371824|dbj|BAF65701.1| internalin A [Listeria monocytogenes]
gi|150371830|dbj|BAF65704.1| internalin A [Listeria monocytogenes]
gi|150371832|dbj|BAF65705.1| internalin A [Listeria monocytogenes]
gi|150371834|dbj|BAF65706.1| internalin A [Listeria monocytogenes]
gi|150371836|dbj|BAF65707.1| internalin A [Listeria monocytogenes]
gi|150371838|dbj|BAF65708.1| internalin A [Listeria monocytogenes]
gi|150371844|dbj|BAF65711.1| internalin A [Listeria monocytogenes]
gi|150371848|dbj|BAF65713.1| internalin A [Listeria monocytogenes]
gi|150371850|dbj|BAF65714.1| internalin A [Listeria monocytogenes]
gi|150371854|dbj|BAF65716.1| internalin A [Listeria monocytogenes]
gi|150371864|dbj|BAF65721.1| internalin A [Listeria monocytogenes]
gi|150371870|dbj|BAF65724.1| internalin A [Listeria monocytogenes]
gi|290350828|dbj|BAI78335.1| internalin A [Listeria monocytogenes]
gi|290350832|dbj|BAI78337.1| internalin A [Listeria monocytogenes]
gi|290350834|dbj|BAI78338.1| internalin A [Listeria monocytogenes]
gi|290350840|dbj|BAI78341.1| internalin A [Listeria monocytogenes]
gi|298359802|gb|ADI77480.1| internalin A [Listeria monocytogenes]
gi|298359828|gb|ADI77493.1| internalin A [Listeria monocytogenes]
gi|298359876|gb|ADI77517.1| internalin A [Listeria monocytogenes]
gi|298359878|gb|ADI77518.1| internalin A [Listeria monocytogenes]
gi|298359918|gb|ADI77538.1| internalin A [Listeria monocytogenes]
gi|298359964|gb|ADI77561.1| internalin A [Listeria monocytogenes]
gi|298359966|gb|ADI77562.1| internalin A [Listeria monocytogenes]
gi|298360014|gb|ADI77586.1| internalin A [Listeria monocytogenes]
gi|298360038|gb|ADI77598.1| internalin A [Listeria monocytogenes]
gi|298360084|gb|ADI77621.1| internalin A [Listeria monocytogenes]
gi|298360104|gb|ADI77631.1| internalin A [Listeria monocytogenes]
gi|298360134|gb|ADI77646.1| internalin A [Listeria monocytogenes]
gi|298360170|gb|ADI77664.1| internalin A [Listeria monocytogenes]
gi|298360178|gb|ADI77668.1| internalin A [Listeria monocytogenes]
gi|298360214|gb|ADI77686.1| internalin A [Listeria monocytogenes]
gi|298360242|gb|ADI77700.1| internalin A [Listeria monocytogenes]
gi|298360244|gb|ADI77701.1| internalin A [Listeria monocytogenes]
gi|298360254|gb|ADI77706.1| internalin A [Listeria monocytogenes]
gi|298360278|gb|ADI77718.1| internalin A [Listeria monocytogenes]
gi|298360310|gb|ADI77734.1| internalin A [Listeria monocytogenes]
gi|298360334|gb|ADI77746.1| internalin A [Listeria monocytogenes]
gi|298360338|gb|ADI77748.1| internalin A [Listeria monocytogenes]
gi|298360376|gb|ADI77767.1| internalin A [Listeria monocytogenes]
gi|298360384|gb|ADI77771.1| internalin A [Listeria monocytogenes]
gi|298360436|gb|ADI77797.1| internalin A [Listeria monocytogenes]
gi|298360532|gb|ADI77845.1| internalin A [Listeria monocytogenes]
gi|298360542|gb|ADI77850.1| internalin A [Listeria monocytogenes]
gi|298360552|gb|ADI77855.1| internalin A [Listeria monocytogenes]
gi|298360564|gb|ADI77861.1| internalin A [Listeria monocytogenes]
gi|298360568|gb|ADI77863.1| internalin A [Listeria monocytogenes]
gi|298360596|gb|ADI77877.1| internalin A [Listeria monocytogenes]
gi|298360666|gb|ADI77912.1| internalin A [Listeria monocytogenes]
gi|298360710|gb|ADI77934.1| internalin A [Listeria monocytogenes]
gi|346645358|gb|AEO37983.1| internalin A [Listeria monocytogenes Finland 1998]
gi|443428778|gb|AGC92188.1| internalin A [Listeria monocytogenes]
gi|443428804|gb|AGC92201.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 365 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|371942096|gb|AEX60860.1| internaline [Listeria monocytogenes]
Length = 790
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|189094756|emb|CAQ57434.1| expression site-associated gene 8 (ESAG8) protein [Trypanosoma
brucei brucei]
Length = 630
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 131/442 (29%), Positives = 203/442 (45%), Gaps = 75/442 (16%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN--------- 116
GS++ D L L+D L+ LD + C + L + L NL L +R
Sbjct: 121 GSELQD--LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSS 178
Query: 117 ----------NAITAQGMKAFAGLINLVKLD---LERCTRIHGGLVNLKGLMKLESLNIK 163
++G+ GL L L+ L+ C I G + L +L SL++
Sbjct: 179 IGLLKFLVHLEVDGSRGVTDITGLCRLKTLEALSLDSCINITKGFDKICALPQLTSLSLC 238
Query: 164 WCNCITDSDMKPLSGLTNLKSLQI-SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACL 221
N +TD D++ + LK L I SC ++TD + IA ++ L+KL+ L GC L
Sbjct: 239 QTN-VTDKDLRCIHPDGKLKVLDISSCHEITDLTAIAGVRSLEKLS---LSGCWNVTKGL 294
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGLTN 277
+ L L SL L+++ C + + +LKVL++ F ++ L+ L N
Sbjct: 295 EELCKLSSLRELDISGCPVLGSAV-VLRNLINLKVLSVSNCKNFKDLNG-----LERLVN 348
Query: 278 LESLNLDSC-GIGDEGLVNLTGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSL 329
LE LNL C G+ G V L+NL+ +++S F G+ D L++L+ L
Sbjct: 349 LEKLNLSGCHGVSSLGFV--ANLSNLKELDISGCESLVCFDGLQD--------LNNLEVL 398
Query: 330 NL-DARQITDTGLAALTSLTGLTHLDLFGA-RITD-SGAAYLRNFKNLRSLEICGGGLTD 386
L D + T+ G A+ +L+ + LDL G RIT SG L+ + L SLE CG ++
Sbjct: 399 YLRDVKSFTNVG--AIKNLSKMRELDLSGCERITSLSGLETLKRLEEL-SLEGCGEIMS- 454
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
I L L +L +S+ NL D L + G+TGL L + R + + P+ N
Sbjct: 455 --FDPIWSLHHLRVLYVSECGNLED--LSGLEGITGLEELYLHGCRKCT----NFGPIWN 506
Query: 447 LRSL-TLE-SCKVTANDIKRLQ 466
LR++ LE SC D+ LQ
Sbjct: 507 LRNVCVLELSCCENLEDLSGLQ 528
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 116/420 (27%), Positives = 185/420 (44%), Gaps = 62/420 (14%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+ L ++VTD L + L+ LD + C +I+D L + G+ +L LS
Sbjct: 231 QLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIAGVRSLEKLSLSGCW 288
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T +G++ L +L +LD+ C + G V L+ L+ L+ L++ NC D+ L
Sbjct: 289 NVT-KGLEELCKLSSLRELDISGCP-VLGSAVVLRNLINLKVLSVS--NCKNFKDLNGLE 344
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L NL+ L +S C V S + ++ L L L++ GC + C D L L +L L L
Sbjct: 345 RLVNLEKLNLSGCHGV--SSLGFVANLSNLKELDISGCE-SLVCFDGLQDLNNLEVLYLR 401
Query: 237 RCQLSDDGCEKFSKIGSLKVLNL-------GFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ F+ +G++K L+ G IT L L+ L LE L+L+ CG
Sbjct: 402 DVK-------SFTNVGAIKNLSKMRELDLSGCERITS--LSGLETLKRLEELSLEGCG-- 450
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL---SSLKSLNLDA-RQITDTG----- 340
+++ + +L + + + G+L L+GL + L+ L L R+ T+ G
Sbjct: 451 --EIMSFDPIWSLHHLRVLYVS-ECGNLEDLSGLEGITGLEELYLHGCRKCTNFGPIWNL 507
Query: 341 ----------------LAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-G 382
L+ L LTGL L L G IT G + N +NL+ L C
Sbjct: 508 RNVCVLELSCCENLEDLSGLQCLTGLKELYLIGCEEITTIGV--VGNLRNLKCLSTCWCA 565
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L + G ++ L +L L+LS C L+ + L L SR+ L LK
Sbjct: 566 NLKELG--GLERLVNLEKLDLSGCCGLSSSVFMELMSLPKLQWFYGFGSRVPDIVLEELK 623
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 100/224 (44%), Gaps = 22/224 (9%)
Query: 249 SKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLTNLES 304
SK G K+LNL +E+ D L L+ L LE L+L C + E +V LT L NL
Sbjct: 107 SKNGRWKILNLSGCGSELQD--LTALRDLEALEDLDLSECANLELRELMVVLT-LRNLRK 163
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+ + T ++D + L L L +D G +T +TGL L A DS
Sbjct: 164 LRMKRTMVNDMWCSSIGLLKFLVHLEVD-------GSRGVTDITGLCRLKTLEALSLDSC 216
Query: 365 AAYLRNF------KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+ F L SL +C +TD ++ I L +L++S +TD L I+
Sbjct: 217 INITKGFDKICALPQLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIA 274
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
G+ L L++S + GL L L +LR L + C V + +
Sbjct: 275 GVRSLEKLSLSGCWNVTKGLEELCKLSSLRELDISGCPVLGSAV 318
>gi|148607482|gb|ABQ95519.1| InlA [Listeria monocytogenes]
Length = 800
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|130774795|gb|ABO32412.1| InlA [Listeria monocytogenes]
gi|150371796|dbj|BAF65687.1| internalin A [Listeria monocytogenes]
gi|150371806|dbj|BAF65692.1| internalin A [Listeria monocytogenes]
gi|150371822|dbj|BAF65700.1| internalin A [Listeria monocytogenes]
gi|194326149|emb|CAQ77233.1| internalin A [Listeria monocytogenes]
gi|298359930|gb|ADI77544.1| internalin A [Listeria monocytogenes]
gi|298360322|gb|ADI77740.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|56797881|emb|CAH04902.1| internalin A [Listeria monocytogenes]
Length = 773
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 171/347 (49%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ NN
Sbjct: 73 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 126
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 127 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 178
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT+L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 179 LTSLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILANLDELSL 231
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L ++I++ L L GLT L L L + I + L
Sbjct: 232 NGNQLKDIGT--LASLTNLTDLDLANDQISN--LAPLSGLTKLTELKLGANQISNISPLA 287
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 288 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 337
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 338 RLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 374
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 154/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 27 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 71
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 72 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 101
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 102 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 155
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLTNL+ LSF G L+ LA L+SL+ L++ + +++D ++ L LT L L
Sbjct: 156 SGLTNLQQ--LSF-GNQVTDLKPLANLTSLERLDISSNKVSD--ISVLAKLTNLESLIAT 210
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N +++ L
Sbjct: 211 NNQISD--ITPLGILANLDELSLNGNQLKDIGT--LASLTNLTDLDLA-NDQISN--LAP 263
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 264 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 293
>gi|148607492|gb|ABQ95522.1| InlA [Listeria monocytogenes]
Length = 800
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|371942110|gb|AEX60867.1| internaline [Listeria monocytogenes]
gi|371942112|gb|AEX60868.1| internaline [Listeria monocytogenes]
Length = 789
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|371942132|gb|AEX60878.1| internaline [Listeria monocytogenes]
Length = 790
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGDNQISDLTPL 401
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|298359882|gb|ADI77520.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|223698835|gb|ACN19130.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|255523038|ref|ZP_05390010.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|255513153|gb|EET89421.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
Length = 421
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 133/267 (49%), Gaps = 43/267 (16%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
++ +C +D+ I Y+ G++ L+NL+ +T ++ +S L L NL L DD
Sbjct: 168 MEQNCGIKSDNTIKYINGIE--GLVNLQSLTLTYCQIEDISPLKGL--TNLKELMLYDDN 223
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
ITD + LKGLTNLE L L I D + +L GLT L+
Sbjct: 224 -------------------ITD--ISPLKGLTNLEFLELYGNQITD--IPSLEGLTKLKD 260
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
I+L I D +L L LS+L+ LNL +ITD +++L LT L LDL I+D
Sbjct: 261 IDLGNNKIHDITL--LRELSNLQELNLVYNKITD--ISSLKELTNLNSLDLDNNNISD-- 314
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
+ L NL+SL + +TD + +K L++L L L N N+TD IS L GL
Sbjct: 315 ISPLEKLSNLKSLSLGSNKITD--ISSLKGLTNLNSLVLDDN-NITD-----ISPLKGLT 366
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLT 451
+LN N + S + + PL+ L +L+
Sbjct: 367 NLNFLN--LGSNKISDISPLEGLTNLS 391
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 107/196 (54%), Gaps = 19/196 (9%)
Query: 275 LTNLESLNLDSCGIGDEGLVN----LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+ N+ L +CGI + + + GL NL+S+ L++ I D + L GL++LK L
Sbjct: 161 VENITELMEQNCGIKSDNTIKYINGIEGLVNLQSLTLTYCQIED--ISPLKGLTNLKELM 218
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L ITD ++ L LT L L+L+G +ITD + L L+ +++ + D +
Sbjct: 219 LYDDNITD--ISPLKGLTNLEFLELYGNQITDIPS--LEGLTKLKDIDLGNNKIHDITL- 273
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+++LS+L LNL N +TD + + LT L SL++ N+ I + + L+ L NL+SL
Sbjct: 274 -LRELSNLQELNLVYN-KITD--ISSLKELTNLNSLDLDNNNI--SDISPLEKLSNLKSL 327
Query: 451 TLESCKVTANDIKRLQ 466
+L S K+T DI L+
Sbjct: 328 SLGSNKIT--DISSLK 341
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 102/228 (44%), Gaps = 50/228 (21%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK---------------- 125
NLQSL +C QI D + L+GL+NL L +N +K
Sbjct: 191 NLQSLTLTYC-QIED--ISPLKGLTNLKELMLYDDNITDISPLKGLTNLEFLELYGNQIT 247
Query: 126 ---AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD------------ 170
+ GL L +DL +IH + L+ L L+ LN+ + N ITD
Sbjct: 248 DIPSLEGLTKLKDIDLGN-NKIHD-ITLLRELSNLQELNLVY-NKITDISSLKELTNLNS 304
Query: 171 --------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
SD+ PL L+NLKSL + +K+TD I+ LKGL L L L+ +T +
Sbjct: 305 LDLDNNNISDISPLEKLSNLKSLSLGSNKITD--ISSLKGLTNLNSLVLDDNNITD--IS 360
Query: 223 SLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECL 269
L L +L +LNL ++SD E + + +L + + NE+ E L
Sbjct: 361 PLKGLTNLNFLNLGSNKISDISPLEGLTNLSTLWLKDTPTNEVYKEKL 408
>gi|223698682|gb|ACN19028.1| internalin A [Listeria monocytogenes]
Length = 712
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|223698607|gb|ACN18978.1| internalin A [Listeria monocytogenes]
gi|223698703|gb|ACN19042.1| internalin A [Listeria monocytogenes]
gi|223698760|gb|ACN19080.1| internalin A [Listeria monocytogenes]
gi|223698907|gb|ACN19178.1| internalin A [Listeria monocytogenes]
gi|223698910|gb|ACN19180.1| internalin A [Listeria monocytogenes]
gi|223698916|gb|ACN19184.1| internalin A [Listeria monocytogenes]
gi|223698919|gb|ACN19186.1| internalin A [Listeria monocytogenes]
gi|223698964|gb|ACN19216.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 15 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 69 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 229
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 230 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 279
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 280 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|16802477|ref|NP_463962.1| internalin A [Listeria monocytogenes EGD-e]
gi|386049359|ref|YP_005967350.1| internalin-A [Listeria monocytogenes FSL R2-561]
gi|404282867|ref|YP_006683764.1| internalin A [Listeria monocytogenes SLCC2372]
gi|403399437|sp|P0DJM0.1|INLA_LISMO RecName: Full=Internalin-A; Flags: Precursor
gi|12054782|emb|CAC20628.1| internalin A [Listeria monocytogenes]
gi|16409810|emb|CAC98512.1| Internalin A [Listeria monocytogenes EGD-e]
gi|130774817|gb|ABO32421.1| InlA [Listeria monocytogenes]
gi|130774821|gb|ABO32423.1| InlA [Listeria monocytogenes]
gi|130774823|gb|ABO32424.1| InlA [Listeria monocytogenes]
gi|150371782|dbj|BAF65680.1| internalin A [Listeria monocytogenes]
gi|150371794|dbj|BAF65686.1| internalin A [Listeria monocytogenes]
gi|150371804|dbj|BAF65691.1| internalin A [Listeria monocytogenes]
gi|150371820|dbj|BAF65699.1| internalin A [Listeria monocytogenes]
gi|150371846|dbj|BAF65712.1| internalin A [Listeria monocytogenes]
gi|150371852|dbj|BAF65715.1| internalin A [Listeria monocytogenes]
gi|150371856|dbj|BAF65717.1| internalin A [Listeria monocytogenes]
gi|150371860|dbj|BAF65719.1| internalin A [Listeria monocytogenes]
gi|150371868|dbj|BAF65723.1| internalin A [Listeria monocytogenes]
gi|167861980|gb|ACA05689.1| InlA [Listeria monocytogenes]
gi|194239382|emb|CAQ76831.1| internalin A [Listeria monocytogenes]
gi|298359818|gb|ADI77488.1| internalin A [Listeria monocytogenes]
gi|298359832|gb|ADI77495.1| internalin A [Listeria monocytogenes]
gi|298360054|gb|ADI77606.1| internalin A [Listeria monocytogenes]
gi|298360128|gb|ADI77643.1| internalin A [Listeria monocytogenes]
gi|298360212|gb|ADI77685.1| internalin A [Listeria monocytogenes]
gi|298360216|gb|ADI77687.1| internalin A [Listeria monocytogenes]
gi|298360256|gb|ADI77707.1| internalin A [Listeria monocytogenes]
gi|298360522|gb|ADI77840.1| internalin A [Listeria monocytogenes]
gi|346423205|gb|AEO24730.1| internalin-A [Listeria monocytogenes FSL R2-561]
gi|404232369|emb|CBY53772.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2372]
Length = 800
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 365 RLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|390630346|ref|ZP_10258331.1| Internalin F [Weissella confusa LBAE C39-2]
gi|390484465|emb|CCF30679.1| Internalin F [Weissella confusa LBAE C39-2]
Length = 706
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 161/333 (48%), Gaps = 46/333 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+++ ++L+ +TD L L+ +NLQ+LD I+D + L+ L NLT+LS R N
Sbjct: 46 ATITQLNLTYDGITD--LTGLEFATNLQALDLTGNT-IAD--ITPLQNLHNLTNLSLRMN 100
Query: 117 NAITAQGMKAFAGL----INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
A + AG +NLV D GL L L +LE N N +T
Sbjct: 101 KAKIMPDLSLLAGTPVKSLNLVADDYGTQPDKMAGLAQLTSLEELEMQN----NDLTT-- 154
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL------EGCPVTAAC------ 220
+ P++GL L+ L ++ +K+T + L G+++LT L + + P+ +
Sbjct: 155 VPPVTGLPKLRYLGLAGNKLT--SVQALAGMRQLTELKVGSNQLTDYTPIASLTNLTTLS 212
Query: 221 --------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVH 271
+ L +L +L ++ L+++ + FS + L L++ FN +I+D L
Sbjct: 213 IGNNRSNDISMLRSLVNLEEATFSQMGLTNNAVQIFSYMPKLVTLSIDFNDQISD--LTP 270
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L GL L+SLN + D L L +TNL +LSF+ +L LAGL+ L SLN+
Sbjct: 271 LAGLRQLQSLNFSKDRVAD--LTPLKQMTNL--TDLSFSNAQVANLAPLAGLTKLTSLNM 326
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
++D L+ L +L L++L+ +T++
Sbjct: 327 LRNHVSD--LSPLQNLQDLSYLNAKFQSVTNAA 357
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 133/287 (46%), Gaps = 21/287 (7%)
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL-----F 231
+ LT I+ +T GI L GL+ T NL+ +T + ++ L +L
Sbjct: 38 TPLTKANVATITQLNLTYDGITDLTGLEFAT--NLQALDLTGNTIADITPLQNLHNLTNL 95
Query: 232 YLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L +N+ ++ D + + SL ++ + D+ + L LT+LE L + + +
Sbjct: 96 SLRMNKAKIMPDLSLLAGTPVKSLNLVADDYGTQPDK-MAGLAQLTSLEELEMQNNDL-- 152
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+ +TGL L + L+ ++ S++ LAG+ L L + + Q+TD + SLT L
Sbjct: 153 TTVPPVTGLPKLRYLGLAGNKLT--SVQALAGMRQLTELKVGSNQLTD--YTPIASLTNL 208
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T L + R D + LR+ NL GLT+ V+ + L L++ N ++
Sbjct: 209 TTLSIGNNRSND--ISMLRSLVNLEEATFSQMGLTNNAVQIFSYMPKLVTLSIDFNDQIS 266
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
D L ++GL L SLN S R+ A L LK + NL L+ + +V
Sbjct: 267 D--LTPLAGLRQLQSLNFSKDRV--ADLTPLKQMTNLTDLSFSNAQV 309
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-----LKGLMK 156
+ L+NLT+LS N + + L+NL E T GL N + K
Sbjct: 202 IASLTNLTTLSIGNNRS---NDISMLRSLVNL-----EEATFSQMGLTNNAVQIFSYMPK 253
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L +L+I + + I SD+ PL+GL L+SL S +V D + LK + LT L+ V
Sbjct: 254 LVTLSIDFNDQI--SDLTPLAGLRQLQSLNFSKDRVAD--LTPLKQMTNLTDLSFSNAQV 309
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
A L L+ L L LN+ R +SD + L LN F +T+ + GL
Sbjct: 310 --ANLAPLAGLTKLTSLNMLRNHVSD--LSPLQNLQDLSYLNAKFQSVTNAAI----GLK 361
Query: 277 NLES 280
N E+
Sbjct: 362 NGET 365
>gi|223698658|gb|ACN19012.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|223698622|gb|ACN18988.1| internalin A [Listeria monocytogenes]
gi|223698634|gb|ACN18996.1| internalin A [Listeria monocytogenes]
gi|223698694|gb|ACN19036.1| internalin A [Listeria monocytogenes]
gi|223698712|gb|ACN19048.1| internalin A [Listeria monocytogenes]
gi|223698745|gb|ACN19070.1| internalin A [Listeria monocytogenes]
gi|223698751|gb|ACN19074.1| internalin A [Listeria monocytogenes]
gi|223698766|gb|ACN19084.1| internalin A [Listeria monocytogenes]
gi|223698769|gb|ACN19086.1| internalin A [Listeria monocytogenes]
gi|223698772|gb|ACN19088.1| internalin A [Listeria monocytogenes]
gi|223698775|gb|ACN19090.1| internalin A [Listeria monocytogenes]
gi|223698778|gb|ACN19092.1| internalin A [Listeria monocytogenes]
gi|223698787|gb|ACN19098.1| internalin A [Listeria monocytogenes]
gi|223698793|gb|ACN19102.1| internalin A [Listeria monocytogenes]
gi|223698799|gb|ACN19106.1| internalin A [Listeria monocytogenes]
gi|223698802|gb|ACN19108.1| internalin A [Listeria monocytogenes]
gi|223698805|gb|ACN19110.1| internalin A [Listeria monocytogenes]
gi|223698817|gb|ACN19118.1| internalin A [Listeria monocytogenes]
gi|223698859|gb|ACN19146.1| internalin A [Listeria monocytogenes]
gi|223698865|gb|ACN19150.1| internalin A [Listeria monocytogenes]
gi|223698979|gb|ACN19226.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 15 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 69 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 229
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 230 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 279
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 280 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|371942100|gb|AEX60862.1| internaline [Listeria monocytogenes]
Length = 789
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|223698664|gb|ACN19016.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 15 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 69 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 229
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 230 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 279
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 280 RLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 316
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|22347546|gb|AAM95918.1| internalin A precursor [Listeria monocytogenes]
gi|22347550|gb|AAM95920.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 44 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 97
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 98 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 149
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 150 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 202
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 203 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 258
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 259 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 308
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 309 RLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 345
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 37 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|325108768|ref|YP_004269836.1| hypothetical protein Plabr_2212 [Planctomyces brasiliensis DSM
5305]
gi|324969036|gb|ADY59814.1| hypothetical protein Plabr_2212 [Planctomyces brasiliensis DSM
5305]
Length = 268
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 64/112 (57%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+L ++SD + S++ + ++NL ITD L HL GL +L L+L+ GI D G
Sbjct: 50 FHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDAG 109
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
L +LTGL LE +NL T ISD L++LA L LK L + Q+T G+ L
Sbjct: 110 LKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKL 161
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
+L EI+D+ + + LT + +NL I D GL +L+GL +L ++L TGI+D
Sbjct: 49 TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDA 108
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
L+ L GL+ L+ LNL +I+D GL L +L GL L ++ ++T G L+
Sbjct: 109 GLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQE 163
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 15/142 (10%)
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+ +L I D+ + ++ LT + +NL T I+D L L+GL SL L+L+ ITD
Sbjct: 49 TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDA 108
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
GL LT L L +L+L+ +I+D+G L K L+ L + +T GVK +++
Sbjct: 109 GLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQE----- 163
Query: 400 LLNLSQNCNLTDKTLELISGLT 421
Q LT +ISGL+
Sbjct: 164 -----QRPELT-----IISGLS 175
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+I+D + ++ LT + ++L G ITD+G A+L +L L + G+TDAG+KH+
Sbjct: 56 EISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHLTG 115
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L+ L LNL + ++D L+ ++ L GL L V +++T G++ L+
Sbjct: 116 LNKLEYLNLY-DTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQ 162
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 59/98 (60%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I+D ++P+S LT + + + + +TD+G+A+L GL L+ L+LE +T A L L+ L
Sbjct: 57 ISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHLTGL 116
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L YLNL ++SD G ++ + + LK L + ++T
Sbjct: 117 NKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVT 154
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
LVNL+G ITD+ + LSGL +L L + + +TD+G+ +L GL KL
Sbjct: 73 LVNLRG------------TAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHLTGLNKLE 120
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
LNL ++ A L L+AL L L + + Q++ DG +K +
Sbjct: 121 YLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQE 163
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 12/154 (7%)
Query: 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSN 107
++ +Q +++ V+ +G V +K N L+ F + +ISD ++ + L+
Sbjct: 18 LLPAQQAAVSKVEANGGRV-------MKLAQNDDRLEVTFHLAEGEISDKSIQPVSELTQ 70
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
+ ++ R AIT G+ +GL +L +L LE+ GL +L GL KLE LN+ +
Sbjct: 71 VYLVNLR-GTAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHLTGLNKLEYLNL-YDTK 128
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
I+D+ ++ L+ L LK L + ++VT G+ L+
Sbjct: 129 ISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQ 162
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 24/137 (17%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+ ++ +++D I + L ++ L+NL G +T A L LS L SL L+L +
Sbjct: 49 TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTG---- 104
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
ITD L HL GL LE LNL I D GL L L L+
Sbjct: 105 --------------------ITDAGLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLK 144
Query: 304 SINLSFTGISDGSLRKL 320
+ + T ++ ++KL
Sbjct: 145 KLYVWQTQVTWDGVKKL 161
>gi|290986035|ref|XP_002675730.1| predicted protein [Naegleria gruberi]
gi|284089328|gb|EFC42986.1| predicted protein [Naegleria gruberi]
Length = 483
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 152/326 (46%), Gaps = 35/326 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCS--NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ L +D S +D T S L+ + D S L++L C I D ++ + LS LTSLS
Sbjct: 183 TQLTELDASCNDFTISVLVQVIDNSLKQLKTLSVYSC-NIEDEHMKDITTLSQLTSLSVG 241
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N IT +K ++K L LE N N I D+ +
Sbjct: 242 IN-RITGNSLKLIG--------------------YSMKDLTYLEVAN----NEIGDAGTE 276
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L L LK L IS +K++ G ++K + +L +L + + ++S L +L ++
Sbjct: 277 YLCNLKKLKELSISSNKISQLGFEHIKSMDQLRILQCNNTNIMNQ-VSTMSHLETLVVIS 335
Query: 235 LNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSCGIGDEG 292
C+++ + E SK + SL LNL N I D V + + +L L+L+SC I D
Sbjct: 336 --DCKINIEIFESMSKNMKSLTKLNLYKNAINDMDFVRFIASIQHLRELHLESCSINDNS 393
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLT 351
+ ++ + NL + + I+DG ++ L L+SL+ L++ I G+ ++S L GLT
Sbjct: 394 VEIISSIQNLRGLFVPSNDITDGGVKHLTKLTSLRELDIYCNPIGLEGVKIISSGLKGLT 453
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSL 377
L + I + G YL NL +L
Sbjct: 454 SLTISKKDIGERG-QYLIRLMNLDTL 478
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 122/280 (43%), Gaps = 53/280 (18%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
EG + A L L+ LG + + + D+G + K+ L L+ N+ T LV
Sbjct: 149 EGVTLIANSLKQLTKLG------IGQVGVGDEGVRQLEKLTQLTELDASCNDFTISVLVQ 202
Query: 272 L--KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+ L L++L++ SC I DE + ++T L+ L S+++ I+ SL KL G S
Sbjct: 203 VIDNSLKQLKTLSVYSCNIEDEHMKDITTLSQLTSLSVGINRITGNSL-KLIGYS----- 256
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+ LT+L++ I D+G YL N K L+ L I ++ G
Sbjct: 257 -----------------MKDLTYLEVANNEIGDAGTEYLCNLKKLKELSISSNKISQLGF 299
Query: 390 KHIKDLSSLTLLN--------------------LSQNCNLTDKTLELIS-GLTGLVSLNV 428
+HIK + L +L + +C + + E +S + L LN+
Sbjct: 300 EHIKSMDQLRILQCNNTNIMNQVSTMSHLETLVVISDCKINIEIFESMSKNMKSLTKLNL 359
Query: 429 SNSRITSAG-LRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ I +R + +++LR L LESC + N ++ + S
Sbjct: 360 YKNAINDMDFVRFIASIQHLRELHLESCSINDNSVEIISS 399
>gi|112961790|gb|ABI28546.1| internalin A [Listeria monocytogenes]
Length = 693
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 111/342 (32%), Positives = 167/342 (48%), Gaps = 52/342 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGL 299
D G + + +L L+L N+I++ L L GLT L L L + I + L LT L
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTAL 215
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLTHLDLF 356
TNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L L +
Sbjct: 216 TNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 265
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+++D + L N N+ L AG I DL+ L
Sbjct: 266 NNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 297
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+N Q++D + + +L L L N+ITD + LK LTNL L L S I D +
Sbjct: 23 MNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--IS 76
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+GLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 77 ALSGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 131
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 132 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 184
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 185 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|167861900|gb|ACA05649.1| InlA [Listeria monocytogenes]
gi|194326161|emb|CAQ77239.1| internalin A [Listeria monocytogenes]
gi|298360364|gb|ADI77761.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 365 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|46445832|ref|YP_007197.1| F-box protein [Candidatus Protochlamydia amoebophila UWE25]
gi|46399473|emb|CAF22922.1| putative F-box protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 329
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL HL L L L+ + +T G+
Sbjct: 197 LTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGLAHLT 256
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LI L LDL+ C ++ GL L+ L+ L+ LN+K C+ +TD + L L L+ L +
Sbjct: 257 LLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAHLRPLVALQHLDL 316
Query: 188 S-CSKVTDSGIAY 199
C+ +TD+G+A+
Sbjct: 317 DGCNNLTDAGLAH 329
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 84/145 (57%), Gaps = 5/145 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+++ +TD+ + L NLK LQ+ +C +TD G+A+L L+ L LNL C
Sbjct: 185 EIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSEC 244
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T A L L+ L +L YL+L C +L+D G + + +L+ LNL G + +TD L H
Sbjct: 245 DNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAH 304
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN 295
L+ L L+ L+LD C + D GL +
Sbjct: 305 LRPLVALQHLDLDGCNNLTDAGLAH 329
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 77/144 (53%), Gaps = 5/144 (3%)
Query: 302 LESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA- 358
+E+I+ S ++D L L +LK L L A R +TD GLA L L L HL+L
Sbjct: 186 IEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECD 245
Query: 359 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+TD+G A+L L+ L++ G LTDAG+ ++ L +L LNL NLTD L +
Sbjct: 246 NLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAHL 305
Query: 418 SGLTGLVSLNVSN-SRITSAGLRH 440
L L L++ + +T AGL H
Sbjct: 306 RPLVALQHLDLDGCNNLTDAGLAH 329
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLES 159
L SN + ++ F N +T + NL L L+ C + GL +L L L+
Sbjct: 179 LNHFSNEIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKH 238
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
LN+ C+ +TD+ + L+ L L+ L + C+K+TD+G+A L+ L L LNL+GC +T
Sbjct: 239 LNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLT 298
Query: 218 AACLDSLSALGSLFYLNLNRC-QLSDDG 244
L L L +L +L+L+ C L+D G
Sbjct: 299 DIGLAHLRPLVALQHLDLDGCNNLTDAG 326
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 360 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+TD+ L+N KNL+ L++ LTD G+ H+ L +L LNLS+ NLTD L ++
Sbjct: 197 LTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGLAHLT 256
Query: 419 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L L L++ +++T AGL L+PL L+ L L+ C
Sbjct: 257 LLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGC 294
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 57 SSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+L ++LS D +TD+GL HL LQ LD C +++D GL LR L L L+ +
Sbjct: 234 EALKHLNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKG 293
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI 144
+ +T G+ L+ L LDL+ C +
Sbjct: 294 CDNLTDIGLAHLRPLVALQHLDLDGCNNL 322
>gi|194239392|emb|CAQ76836.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 365 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|443428862|gb|AGC92230.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL+
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LGSLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 365 RLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 401
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 161/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L LK LTNL L L S I D + L+GL +L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTISD--ISALSGLISLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LGSLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 91/207 (43%), Gaps = 51/207 (24%)
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
LG +TD V L + +L D GI + + + L NL IN S ++D +
Sbjct: 61 LGKTNVTDT--VSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTD--IT 114
Query: 319 KLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
L L+ L + ++ QI D T LA LT+LTGLT LF +ITD L+N NL L
Sbjct: 115 PLKNLTKLVDILMNNNQIADITPLANLTNLTGLT---LFNNQITDLDP--LKNLTNLNRL 169
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
E+ ++D IS L+GL+SL + S G
Sbjct: 170 ELSSNTISD------------------------------ISALSGLISL-----QQLSFG 194
Query: 438 --LRHLKPLKNLRSLTLESCKVTANDI 462
+ LKPL NL TLE +++N +
Sbjct: 195 NQVTDLKPLANLT--TLERLDISSNKV 219
>gi|130774809|gb|ABO32417.1| InlA [Listeria monocytogenes]
Length = 800
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 314
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 315 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 364
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 365 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|223698655|gb|ACN19010.1| internalin A [Listeria monocytogenes]
gi|223698913|gb|ACN19182.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 170/347 (48%), Gaps = 52/347 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 15 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 69 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLV 294
N QL D G + + +L L+L N+I++ L L GLT L L L + I + L
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 229
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLT 351
LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L
Sbjct: 230 GLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 279
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + +++D + L N N+ L AG I DL+ L
Sbjct: 280 RLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|241132583|ref|XP_002404531.1| leucine-rich transmembrane protein, putative [Ixodes scapularis]
gi|215493622|gb|EEC03263.1| leucine-rich transmembrane protein, putative [Ixodes scapularis]
Length = 732
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 129/280 (46%), Gaps = 4/280 (1%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L+SL +S +K+T + +L L+L V++ SL L SL L LN+ L
Sbjct: 41 SLRSLDLSFNKITVIPMGVFTNSSRLLQLSLNSNKVSSVEKGSLDNLTSLETLRLNKNHL 100
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
+ F K+ +LK L L N I + KGL +LESL+L I L
Sbjct: 101 VTIPKDLFLKLQALKQLELNKNRIRAIEGLSFKGLESLESLSLRRNSISHLSDGAFYYLG 160
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
++++NL F I+ + L GLS+LK LNL IT+ G+ LTHLDL ++
Sbjct: 161 KIQNLNLDFNNITVVTKGWLYGLSALKLLNLTGNSITEVGMDGWEYCRKLTHLDLTSNKL 220
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLT---DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+ ++LR L + ++ + KH+ L +L L + + + D +
Sbjct: 221 QAITTSTFAKAESLRFLYLGHNMVSYIEEGAFKHLNHLKTLHLDHNEISWTMEDTNGPFL 280
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
GL+ LV L +S++ I S R L L+SL L V
Sbjct: 281 -GLSSLVQLTLSDNSIKSLTPRAFAGLGRLQSLDLSGNPV 319
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 135/287 (47%), Gaps = 14/287 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQ--SLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
SL S+DLS + +T + + S L SL+ N + G L++L ++L +L
Sbjct: 40 PSLRSLDLSFNKITVIPMGVFTNSSRLLQLSLNSNKVSSVEKGSLDNL---TSLETLRLN 96
Query: 115 RNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+N+ +T F L L +L+L R I G ++ KGL LESL+++ N I+
Sbjct: 97 KNHLVTIP-KDLFLKLQALKQLELNKNRIRAIEG--LSFKGLESLESLSLR-RNSISHLS 152
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
L +++L + + +T +L GL L LLNL G +T +D L +
Sbjct: 153 DGAFYYLGKIQNLNLDFNNITVVTKGWLYGLSALKLLNLTGNSITEVGMDGWEYCRKLTH 212
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--- 289
L+L +L F+K SL+ L LG N ++ K L +L++L+LD I
Sbjct: 213 LDLTSNKLQAITTSTFAKAESLRFLYLGHNMVSYIEEGAFKHLNHLKTLHLDHNEISWTM 272
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
++ GL++L + LS I + R AGL L+SL+L +
Sbjct: 273 EDTNGPFLGLSSLVQLTLSDNSIKSLTPRAFAGLGRLQSLDLSGNPV 319
>gi|290972751|ref|XP_002669114.1| predicted protein [Naegleria gruberi]
gi|284082657|gb|EFC36370.1| predicted protein [Naegleria gruberi]
Length = 259
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 107/203 (52%), Gaps = 5/203 (2%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+KG+T L ++N +S G+ EG ++++ + L ++++ + + + + ++ L LK L++
Sbjct: 31 MKGITTL-TINYNSIGV--EGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDI 87
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+ I G ++ + LT LD+F I + GA + K L L+I + G K+
Sbjct: 88 GSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKY 147
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
I L LT L++S N ++ K + IS + L LN+ N+ I + G++H+ + L L
Sbjct: 148 ISQLRKLTHLDISSN-DIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLD 206
Query: 452 LESCKVTANDIKRLQS-RDLPNL 473
+ +++A +K + + L NL
Sbjct: 207 IGDNEISAEGVKYISGMKQLTNL 229
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 105/220 (47%), Gaps = 1/220 (0%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L +N + +G SK+ L L++ + + +E ++ L L+ L++ S IG G
Sbjct: 37 LTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDIGSNSIGKNG 96
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
++G+ L +++ I + + ++ + L L + I G ++ L LTH
Sbjct: 97 AKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRKLTH 156
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
LD+ I G+ Y+ L L I + + GVKHI +++ LT L++ N ++ +
Sbjct: 157 LDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDIGDN-EISAE 215
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
++ ISG+ L +L++S + I G + L +K L L
Sbjct: 216 GVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEF 255
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 132/282 (46%), Gaps = 39/282 (13%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRIHGGLVNLKGLM---KLESL 160
L N+T+L F+R + AF L+NL+K + T I+ + ++G M K+E L
Sbjct: 8 LQNVTNLLFKRE-------IGAFDYKLLNLMK-GITTLT-INYNSIGVEGAMHISKMEQL 58
Query: 161 -NIKWCNCI-TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
N+ CN + + K +S L LK L I + + +G Y+ G+++LT L++
Sbjct: 59 TNLDICNSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQLTRLDI------- 111
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
N C ++G + S++ L L + FN+I E ++ L L
Sbjct: 112 --------------FNNTIC---EEGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRKL 154
Query: 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L++ S IG +G ++ + L +N+ I + ++ ++ ++ L L++ +I+
Sbjct: 155 THLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDIGDNEISA 214
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
G+ ++ + LT+LD+ I D GA +L K L LE
Sbjct: 215 EGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEFI 256
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 107/239 (44%), Gaps = 30/239 (12%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
G +H+ L +LD + + + G +++ L L L +N+I G K +G+
Sbjct: 47 EGAMHISKMEQLTNLDICNSV-LYEEGAKYISQLEQLKCLDIG-SNSIGKNGAKYISGMK 104
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L +LD+ + N I + K +S + L L+I+ +
Sbjct: 105 QLTRLDI-------------------------FNNTICEEGAKSISEMKQLTHLKITFND 139
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+ G Y+ L+KLT L++ + A +S + L LN+ + ++G + S++
Sbjct: 140 IGTEGAKYISQLRKLTHLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEM 199
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG---LVNLTGLTNLESINL 307
L L++G NEI+ E + ++ G+ L +L++ IGDEG L + L LE I L
Sbjct: 200 NQLTRLDIGDNEISAEGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEFITL 258
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
R+I L + G+T L + I GA ++ + L +L+IC L + G K+I
Sbjct: 18 REIGAFDYKLLNLMKGITTLTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYIS 77
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
L L L++ N + + ISG+ L L++ N+ I G + + +K L L
Sbjct: 78 QLEQLKCLDIGSNS-IGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHL--- 133
Query: 454 SCKVTANDI 462
K+T NDI
Sbjct: 134 --KITFNDI 140
>gi|112961787|gb|ABI28544.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/342 (32%), Positives = 167/342 (48%), Gaps = 52/342 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGL 299
D G + + +L L+L N+I++ L L GLT L L L + I + L LT L
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTAL 215
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLTHLDLF 356
TNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L L +
Sbjct: 216 TNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 265
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+++D + L N N+ L AG I DL+ L
Sbjct: 266 NNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 297
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 111/217 (51%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+N Q++D + + +L L L N+ITD + LK LTNL L L S I D +
Sbjct: 23 MNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--IS 76
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 77 ALSGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 131
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 132 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 184
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 185 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|112961784|gb|ABI28542.1| internalin A [Listeria monocytogenes]
gi|112961796|gb|ABI28550.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/342 (32%), Positives = 167/342 (48%), Gaps = 52/342 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGL 299
D G + + +L L+L N+I++ L L GLT L L L + I + L LT L
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTAL 215
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLTHLDLF 356
TNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L L +
Sbjct: 216 TNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 265
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+++D + L N N+ L AG I DL+ L
Sbjct: 266 NNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 297
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 111/217 (51%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+N Q++D + + +L L L N+ITD + LK LTNL L L S I D +
Sbjct: 23 MNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--IS 76
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 77 ALSGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 131
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 132 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 184
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 185 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|294358401|gb|ADE73853.1| InlA [Listeria monocytogenes]
Length = 800
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LAGLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 401
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 90/205 (43%), Gaps = 47/205 (22%)
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
LG +TD V L + +L D GI + + + L NL IN S ++D +
Sbjct: 61 LGKTNVTDT--VSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTD--IT 114
Query: 319 KLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
L L+ L + ++ QI D T LA LT+LTGLT LF +ITD L+N NL L
Sbjct: 115 PLKNLTKLVDILMNNNQIADITPLANLTNLTGLT---LFNNQITDLDP--LKNLTNLNRL 169
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
E+ I D+S+L SGLT L L+ N
Sbjct: 170 ELSSN--------TISDISAL-------------------SGLTSLQQLSFGNQ------ 196
Query: 438 LRHLKPLKNLRSLTLESCKVTANDI 462
+ LKPL NL TLE +++N +
Sbjct: 197 VTDLKPLANLT--TLERLDISSNKV 219
>gi|354492507|ref|XP_003508389.1| PREDICTED: F-box/LRR-repeat protein 13 [Cricetulus griseus]
Length = 824
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 122/460 (26%), Positives = 217/460 (47%), Gaps = 54/460 (11%)
Query: 24 SLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCS 81
+L+A C LQ+L + + D+ M I+ +L ++LS + +T+ + L +
Sbjct: 322 TLKAVSHCKNLQELNVSDCQSLTDESMRHISEGCPGVLYLNLSNTTITNRTMRLLPRYFP 381
Query: 82 NLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLV 134
NLQ+L+ +C + +D GL++L G L L I+ QG + A G+++L
Sbjct: 382 NLQNLNLAYCRKFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRNIANSCTGIMHLT 441
Query: 135 KLDL----ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
D+ + C + V ++ +++ ++ I+D K L+ NLK ++ +
Sbjct: 442 INDMPTLTDNCVK-----VLVEKCLQISTVVFIGSPHISDCAFKALTS-CNLKKIRFEGN 495
Query: 191 K-VTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
K +TD+ Y+ K + + + C +T + L SLS L L LNL C ++SD G
Sbjct: 496 KRITDACFKYIDKNYPGINHIYMVDCKTLTDSSLKSLSVLKQLTVLNLTNCIRISDAGLR 555
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTG-LTNLES 304
+F GS+ V + LNL++C +GD +V L+ TNL
Sbjct: 556 QFLD-GSVSV--------------------KIRELNLNNCSLVGDPAIVKLSERCTNLHY 594
Query: 305 INL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITD 362
++L + ++D ++ +A + SL S++L I+ GLA L+ L + L ITD
Sbjct: 595 LSLRNCEHLTDLAIECIANMQSLISIDLSGTSISHEGLALLSRHRKLREVSLSECTNITD 654
Query: 363 SG-AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISG 419
G A+ R+ NL L++ L+D +K + + +T LN++ +TD LE +S
Sbjct: 655 MGIRAFCRSSMNLEHLDVSHCSQLSDDIIKAVAIFCTQITSLNIAGCPKITDGGLETLSA 714
Query: 420 LTGLVS-LNVSNS-RITSAGLRHLKP-LKNLRSLTLESCK 456
+ L++S +T L+ L+ K LR L ++ CK
Sbjct: 715 KCHYLHILDISGCILLTDQILQDLRVGCKQLRILKMQFCK 754
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 161/371 (43%), Gaps = 73/371 (19%)
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG------------ 178
+N+++L+ C L + L+ LN+ C +TD M+ +S
Sbjct: 306 LNVLRLNFRGCFFRTKTLKAVSHCKNLQELNVSDCQSLTDESMRHISEGCPGVLYLNLSN 365
Query: 179 --------------LTNLKSLQIS-CSKVTDSGIAYLK---GLQKLTLLNLEGC-PVTAA 219
NL++L ++ C K TD G+ YL G KL L+L GC ++
Sbjct: 366 TTITNRTMRLLPRYFPNLQNLNLAYCRKFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQ 425
Query: 220 CLDSLS-ALGSLFYLNLNRCQLSDDGC-----EKFSKIGSLKVLNLGFNEITDECLVHLK 273
+++ + + +L +N D C EK +I + V+ +G I+D K
Sbjct: 426 GFRNIANSCTGIMHLTINDMPTLTDNCVKVLVEKCLQIST--VVFIGSPHISD---CAFK 480
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
LT S NL I EG +T + I+ ++ GI+ + +D
Sbjct: 481 ALT---SCNLKK--IRFEGNKRITDAC-FKYIDKNYPGINHIYM-------------VDC 521
Query: 334 RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNF------KNLRSLEICGGGLT- 385
+ +TD+ L +L+ L LT L+L RI+D+G LR F +R L + L
Sbjct: 522 KTLTDSSLKSLSVLKQLTVLNLTNCIRISDAG---LRQFLDGSVSVKIRELNLNNCSLVG 578
Query: 386 -DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
A VK + ++L L+L +LTD +E I+ + L+S+++S + I+ GL L
Sbjct: 579 DPAIVKLSERCTNLHYLSLRNCEHLTDLAIECIANMQSLISIDLSGTSISHEGLALLSRH 638
Query: 445 KNLRSLTLESC 455
+ LR ++L C
Sbjct: 639 RKLREVSLSEC 649
>gi|300867094|ref|ZP_07111761.1| Leucine Rich Repeat domain protein (fragment) [Oscillatoria sp. PCC
6506]
gi|300334925|emb|CBN56927.1| Leucine Rich Repeat domain protein (fragment) [Oscillatoria sp. PCC
6506]
Length = 334
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 129/260 (49%), Gaps = 44/260 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ LS+LT+L + NN I+ +K L NL LDL + ++K L L LN+
Sbjct: 81 QTLSSLTAL-YLYNNQIS--DLKPLQSLTNLTWLDLN-----DNQISDIKPLQSLTKLNV 132
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ SD+KPL LTNL SL + +K++D +K L+ LT L+L
Sbjct: 133 LILHSNKISDIKPLESLTNLTSLSLYSNKISD-----IKPLESLTNLDL----------- 176
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L L+ ++SD + + L +L L N+I D + L+ LTNL SL+
Sbjct: 177 ----------LELHNNKISD--IKPLQSLTKLNLLQLHNNQIGD--IKPLQSLTNLTSLS 222
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L S I D L L LTNL ++LS ISD ++ L L+ L L+L +I+D +
Sbjct: 223 LYSNKISDITL--LQSLTNLTILDLSNNKISD--IKPLEFLTKLNILDLSNNKISD--IE 276
Query: 343 ALTSLTGLTHLDLFGARITD 362
L SLT LT L L+ +I+D
Sbjct: 277 PLQSLTKLTILYLYNNQISD 296
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 45/248 (18%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L L +L +L +L+LN Q+SD + + L VL L N+I+D + L+ LTNL S
Sbjct: 99 LKPLQSLTNLTWLDLNDNQISD--IKPLQSLTKLNVLILHSNKISD--IKPLESLTNLTS 154
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L+L S I D + L LTNL+ + L ISD ++ L L+ L L L QI D
Sbjct: 155 LSLYSNKISD--IKPLESLTNLDLLELHNNKISD--IKPLQSLTKLNLLQLHNNQIGD-- 208
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+ L SLT LT L L+ +I+D L++ NL L++ ++D IK L LT
Sbjct: 209 IKPLQSLTNLTSLSLYSNKISD--ITLLQSLTNLTILDLSNNKISD-----IKPLEFLTK 261
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT-LESCKVTA 459
LN+ L++SN++I+ ++PL++L LT L
Sbjct: 262 LNI----------------------LDLSNNKISD-----IEPLQSLTKLTILYLYNNQI 294
Query: 460 NDIKRLQS 467
+DIK L+S
Sbjct: 295 SDIKTLKS 302
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 107/202 (52%), Gaps = 17/202 (8%)
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS 324
T EC + L++L +L L + I D L L LTNL ++L+ ISD ++ L L+
Sbjct: 73 TTECEAANQTLSSLTALYLYNNQISD--LKPLQSLTNLTWLDLNDNQISD--IKPLQSLT 128
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L L L + +I+D + L SLT LT L L+ +I+D L + NL LE+ +
Sbjct: 129 KLNVLILHSNKISD--IKPLESLTNLTSLSLYSNKISDIKP--LESLTNLDLLELHNNKI 184
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
+D IK L SLT LNL Q N ++ + LT L SL++ +++I+ L L+ L
Sbjct: 185 SD-----IKPLQSLTKLNLLQLHNNQIGDIKPLQSLTNLTSLSLYSNKISDITL--LQSL 237
Query: 445 KNLRSLTLESCKVTANDIKRLQ 466
NL L L + K++ DIK L+
Sbjct: 238 TNLTILDLSNNKIS--DIKPLE 257
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 109/230 (47%), Gaps = 30/230 (13%)
Query: 76 HLKDCSNLQSL-DFNFCI----QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
+ D LQSL N I +ISD ++ L L+NLTSLS N +K L
Sbjct: 117 QISDIKPLQSLTKLNVLILHSNKISD--IKPLESLTNLTSLSLYSNK---ISDIKPLESL 171
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
NL L+L + + ++K L L LN+ + D+KPL LTNL SL + +
Sbjct: 172 TNLDLLELH-----NNKISDIKPLQSLTKLNLLQLHNNQIGDIKPLQSLTNLTSLSLYSN 226
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
K++D I L+ L LT+L+L ++ + L L L L+L+ ++SD E
Sbjct: 227 KISD--ITLLQSLTNLTILDLSNNKISD--IKPLEFLTKLNILDLSNNKISD--IEPLQS 280
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNL-------ESLNLDSCGIGDEGL 293
+ L +L L N+I+D + LK LT L S++ +C + E +
Sbjct: 281 LTKLTILYLYNNQISD--IKTLKSLTKLMLLYLGGNSIDTKTCPLSPESI 328
>gi|290971663|ref|XP_002668605.1| predicted protein [Naegleria gruberi]
gi|284082078|gb|EFC35861.1| predicted protein [Naegleria gruberi]
Length = 968
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 1/178 (0%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNL 302
+G + S++ L L++G N+I DE + + L SL + IGDEG+ ++ + L
Sbjct: 776 EGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQL 835
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
S N+S+ + ++ + L SL++ +I D G +++ L LT L + G I
Sbjct: 836 TSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGV 895
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
GA + K L L+I + D G K I +L L L +S+N + D+ + I G+
Sbjct: 896 EGAKSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISEN-QIGDEGAKFIIGM 952
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 82/170 (48%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
S+S + L L++ Q+ D+G + S++ L L + N I DE + ++ + L S N
Sbjct: 780 SISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSFN 839
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+ G G ++ + L S+++S+ I D + ++ L L SL + I G
Sbjct: 840 ISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGAK 899
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+++ + LT LD+ +I D GA + K L+SL I + D G K I
Sbjct: 900 SISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISENQIGDEGAKFI 949
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 1/170 (0%)
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
IG EG +++ + L S+++ I D + ++ + L SL + I D G+ ++ +
Sbjct: 773 IGVEGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKM 832
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
LT ++ +GA ++ K L SL+I + D G K I +L LT L +S N
Sbjct: 833 KQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGN- 891
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
++ + + IS + L L++ ++I G + + LK L+SLT+ ++
Sbjct: 892 SIGVEGAKSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISENQI 941
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 80/167 (47%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G + +++LT L + G + + S+ + L
Sbjct: 779 KSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSF 838
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N++ + G + S++ L L++ +NEI DE + L L SL + IG EG
Sbjct: 839 NISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGA 898
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
+++ + L +++ I D + ++ L LKSL + QI D G
Sbjct: 899 KSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISENQIGDEG 945
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 101/218 (46%), Gaps = 5/218 (2%)
Query: 94 ISDGGLEHLRGLSNLTSL----SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I+ G L+ ++ + + L ++I +G K+ + + L LD+ G
Sbjct: 744 IAKGSLKEIKNSYDFSKLISEEKEEMEHSIGVEGAKSISEMKQLTSLDIGENQIGDEGAK 803
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
++ + +L SL I N I D +K + + L S IS ++ +G ++ +++LT L
Sbjct: 804 SISEMKQLTSLTIS-GNSIGDEGVKSIRKMKQLTSFNISYNETGVAGAKFISEMKQLTSL 862
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
++ + S+S L L L ++ + +G + S++ L +L++G N+I DE
Sbjct: 863 DISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGAKSISEMKQLTLLDIGENQIGDEGA 922
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
+ L L+SL + IGDEG + G+ S L
Sbjct: 923 KSISELKQLKSLTISENQIGDEGAKFIIGMKQYGSFKL 960
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+ +SG+ + D G+ ++ L S + ++ + G + + + LTSL
Sbjct: 806 SEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSFNISYN-ETGVAGAKFISEMKQLTSLDI 864
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K+ + L L L + + G ++ + +L L+I N I D
Sbjct: 865 SYNE-IGDEGAKSISELKQLTSLTISGNSIGVEGAKSISEMKQLTLLDIG-ENQIGDEGA 922
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-----KLTLLNL 211
K +S L LKSL IS +++ D G ++ G++ KL L+NL
Sbjct: 923 KSISELKQLKSLTISENQIGDEGAKFIIGMKQYGSFKLRLVNL 965
>gi|357511813|ref|XP_003626195.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355501210|gb|AES82413.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 679
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 124/447 (27%), Positives = 213/447 (47%), Gaps = 54/447 (12%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLS---NLTSLSFRRNNAITAQGM 124
VTD GL + CS L+ L +C++ISD G++ L N +S+ + +T + +
Sbjct: 197 VTDIGLAKIAVGCSKLEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLK---VTNESL 253
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSD-MKPLSGLTN 181
++ A L+ L + C + GL L KG L+++++ CNC++ S + +SG
Sbjct: 254 RSIASLLKLEVFIMVGCYLVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEG 313
Query: 182 LKSLQI-SC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC 238
L+ + C S+++ LK L+ L+++ ++G V+ L + S SL L L++C
Sbjct: 314 LEQINAGHCLSELSAPLTNGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKC 373
Query: 239 -QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLK-GLTNLESLNLDSCGIGDE-GLV 294
+++ G + +L L+L +TD + + NL L L+SC + E GL
Sbjct: 374 IGVTNMGIMQVVGCCNLTTLDLTCCRFVTDAAISTIANSCPNLACLKLESCDMVTEIGLY 433
Query: 295 NL-TGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALT-SLTGL 350
+ + LE ++L+ +G++D +L+ L+ S L L L I+D GLA + + L
Sbjct: 434 QIGSSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKL 493
Query: 351 THLDLFG-ARITDSGAAYLRNFKN---LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
T LDL+ RI D G A L N + +L C +TDAG+K I +L L+ L
Sbjct: 494 TELDLYRCVRIGDDGLAALTTGCNKLAMLNLAYC-NRITDAGLKCISNLGELSDFELRGL 552
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL------------KNLRSLTLES 454
N+T G+ ++ VS R+ + L+H + L +NL + +
Sbjct: 553 SNITS---------IGIKAVAVSCKRLANLDLKHCEKLDDTGFRALAFYSQNLLQINMSY 603
Query: 455 CKVT-------ANDIKRLQSRDLPNLV 474
C V+ +++KRLQ L LV
Sbjct: 604 CNVSDHVLWLLMSNLKRLQDAKLVYLV 630
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 117/482 (24%), Positives = 200/482 (41%), Gaps = 88/482 (18%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L+ N++SLD + C I DG + L S+ +L +R G+ + GL L+K
Sbjct: 98 LQKYQNIESLDLSVCPWIEDGAVSTLLNHWSSSWTLGIKRLILSRVTGL-GYVGLEMLIK 156
Query: 136 --------------------------------LDLERCTRIHG-GLVNLK-GLMKLESLN 161
+++++C + GL + G KLE L+
Sbjct: 157 ACPLLEAVDVSHCWGFGDREAAALSCGGKLKEINMDKCLGVTDIGLAKIAVGCSKLEKLS 216
Query: 162 IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL--------- 211
+KWC I+D + LS +L L +S KVT+ + + L KL + +
Sbjct: 217 LKWCLEISDLGIDLLSKKCFDLNFLDVSYLKVTNESLRSIASLLKLEVFIMVGCYLVDDA 276
Query: 212 ------EGCPVTAAC-------------LDSLSALGSLFYLNLNRC--QLSDDGCEKFSK 250
+GCP+ A L +S L +N C +LS
Sbjct: 277 GLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEGLEQINAGHCLSELSAPLTNGLKN 336
Query: 251 IGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLS 308
+ L V+ + ++D L + +L L L C G+ + G++ + G NL +++L+
Sbjct: 337 LKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGCCNLTTLDLT 396
Query: 309 FTG-ISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAAL-TSLTGLTHLDLFGAR-ITDS 363
++D ++ +A +L L L++ +T+ GL + +S L LDL + D
Sbjct: 397 CCRFVTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDI 456
Query: 364 GAAYLRNFKNLRSLE--ICGGGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDKTL-ELISG 419
YL L L+ +C ++D G+ HI + LT L+L + + D L L +G
Sbjct: 457 ALKYLSRCSKLVRLKLGLC-TNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAALTTG 515
Query: 420 LTGLVSLNVSN-SRITSAGLRHLK--------PLKNLRSLTLESCKVTANDIKRLQSRDL 470
L LN++ +RIT AGL+ + L+ L ++T K A KRL + DL
Sbjct: 516 CNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLANLDL 575
Query: 471 PN 472
+
Sbjct: 576 KH 577
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL 77
+ +++L+ C+ L L LG ++D + IA L +DL + D GL L
Sbjct: 453 VNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAAL 512
Query: 78 KD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVK 135
C+ L L+ +C +I+D GL+ + L L+ R + IT+ G+KA A L
Sbjct: 513 TTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLAN 572
Query: 136 LDLERCTRIHG-GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
LDL+ C ++ G L + L +N+ +CN ++D + L ++NLK LQ
Sbjct: 573 LDLKHCEKLDDTGFRALAFYSQNLLQINMSYCN-VSDHVLWLL--MSNLKRLQ------- 622
Query: 194 DSGIAYL 200
D+ + YL
Sbjct: 623 DAKLVYL 629
>gi|87309591|ref|ZP_01091725.1| probable G protein-coupled receptor [Blastopirellula marina DSM
3645]
gi|87287355|gb|EAQ79255.1| probable G protein-coupled receptor [Blastopirellula marina DSM
3645]
Length = 328
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD+ L L +L+ L ++ S VTD + + L +L L LE VT+A + +L++
Sbjct: 80 MTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAGVAALASC 139
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L L C + DD E ++ +L +L+L ITD + HL+ L +L++L L
Sbjct: 140 EKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLRDTA 199
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
+ EG L T+L I+LS I+ ++ L +L+ L L +TD
Sbjct: 200 VTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTD 250
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 108/236 (45%), Gaps = 6/236 (2%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G++ L N +++D+ + SL+ LNL + +TD+ L + L L SL L+
Sbjct: 68 GAVVELRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTA 127
Query: 288 IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ G+ L LE + L+ I D +L + L +L L+L ITD G+ L SL
Sbjct: 128 VTSAGVAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSL 187
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L L L +T G A L++ +LR +++ + + ++ ++ +L L L +
Sbjct: 188 PHLKTLYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGR-T 246
Query: 408 NLTDKTL-ELISGL----TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+LTD+ L E I L L L + IT L LK L L L + + T
Sbjct: 247 SLTDELLPEFIDTLIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRET 302
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 94/219 (42%), Gaps = 12/219 (5%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L L SL LNLN+ ++D E + L+ L L +T + L LE L L
Sbjct: 88 LVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAGVAALASCEKLEELML 147
Query: 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
C I D+ L + L L ++LS T I+D + L L LK+L L +T G A
Sbjct: 148 TECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLRDTAVTGEGFAM 207
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L S T L +DL I S LR+F NL L + LTD + D TL+
Sbjct: 208 LKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTDELLPEFID----TLIRF 263
Query: 404 SQN--------CNLTDKTLELISGLTGLVSLNVSNSRIT 434
+ + +TD +L + L L L V + R T
Sbjct: 264 NPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRET 302
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 22/242 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D HL L +L L+ ++ +T + ++ L L L LER G+ L
Sbjct: 79 RMTDNAASHLVMLQSLQRLNLNQSG-VTDKSLEIMGALPELRSLYLERTAVTSAGVAALA 137
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
KLE L + C I D ++ + L L L +S + +TD+G+ +L+ L L L L
Sbjct: 138 SCEKLEELMLTEC-AIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLR 196
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL--- 269
VT L + L ++L+ ++ E +L+ L LG +TDE L
Sbjct: 197 DTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTDELLPEF 256
Query: 270 --------VHLKGLTNLESLNLDSCGIGDEGLV---NLTGLTNLESINLSFTGISDGSLR 318
HL+GL +E I D L L L +L ++ TG++ G+ +
Sbjct: 257 IDTLIRFNPHLRGLAIME------VPITDNSLTPLKRLAELPDLAVVDFRETGVTRGAFQ 310
Query: 319 KL 320
+L
Sbjct: 311 EL 312
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L ++ ++TD + L L L L+L + +TD + LRSL + +T AG
Sbjct: 73 LRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAG 132
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
V + L L L++ C + D LE I L L L++S + IT AG+ HL+ L +L+
Sbjct: 133 VAALASCEKLEELMLTE-CAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLK 191
Query: 449 SLTLESCKVTANDIKRLQS 467
+L L VT L+S
Sbjct: 192 TLYLRDTAVTGEGFAMLKS 210
>gi|171910953|ref|ZP_02926423.1| probable G protein-coupled receptor LGR4 [Verrucomicrobium spinosum
DSM 4136]
Length = 400
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 3/240 (1%)
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLK 273
P AA + + L + LN+ + SDD K+ +LK L N +++D L L
Sbjct: 135 PYDAAFFEHVGQLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLA 194
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLD 332
GL LE+ + G+ G T L ++ + I D L L A +L+S++L
Sbjct: 195 GLNQLEAFSFVGTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFPNLESISLA 254
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+ D G+A L LT L L+L T ++ +L L++ G G+ I
Sbjct: 255 HAKCGDAGVAQLPKLTKLKGLELGSKNATPGSLVHVAKM-SLEYLQLGDGLDAPEGIAAI 313
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
K +++L L L+ +L D L+ ++G+ GL SL +++ +T L LK +L+ L +
Sbjct: 314 KGMTTLRRLTLTNAKSLGDADLQAVAGIKGLESLELNSVELTDERLPLLKSFSHLKELRI 373
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 110/256 (42%), Gaps = 35/256 (13%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLE 212
L K+ESLNI C +D + PL L LK+L+ + + K++D+G+ L GL +L +
Sbjct: 147 LSKIESLNIIATKC-SDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEAFSFV 205
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEITDEC 268
G + +L ++ + D+G C KF
Sbjct: 206 GTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFP------------------- 246
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
NLES++L GD G+ L LT L+ + L + GSL +A + SL+
Sbjct: 247 --------NLESISLAHAKCGDAGVAQLPKLTKLKGLELGSKNATPGSLVHVAKM-SLEY 297
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L L G+AA+ +T L L L A+ + D+ + K L SLE+ LTD
Sbjct: 298 LQLGDGLDAPEGIAAIKGMTTLRRLTLTNAKSLGDADLQAVAGIKGLESLELNSVELTDE 357
Query: 388 GVKHIKDLSSLTLLNL 403
+ +K S L L +
Sbjct: 358 RLPLLKSFSHLKELRI 373
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 116/281 (41%), Gaps = 51/281 (18%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
Q S + S+++ + +D + L L++L F ++SD GLE L GL+ L + SF
Sbjct: 146 QLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEAFSF- 204
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ F G L ++ G ++ +GL L C
Sbjct: 205 VGTGMQGHAYAKFEGWTALTRVSH------RGSSIDDEGLTLL-------C--------- 242
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ NL+S+ ++ +K D+G+A L L KL L L T L ++ + SL YL
Sbjct: 243 --AKFPNLESISLAHAKCGDAGVAQLPKLTKLKGLELGSKNATPGSLVHVAKM-SLEYLQ 299
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGL 293
L DG + E + +KG+T L L L ++ +GD L
Sbjct: 300 LG------DGLD------------------APEGIAAIKGMTTLRRLTLTNAKSLGDADL 335
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
+ G+ LES+ L+ ++D L L S LK L + R
Sbjct: 336 QAVAGIKGLESLELNSVELTDERLPLLKSFSHLKELRIVNR 376
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L V GS + D GL L NL+S+ + D G+ L L+ L L
Sbjct: 221 TALTRVSHRGSSIDDEGLTLLCAKFPNLESISLAHA-KCGDAGVAQLPKLTKLKGLELGS 279
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-----GLVNLKGLMKLESLNIKWCNCITD 170
NA L+++ K+ LE G G+ +KG+ L L + + D
Sbjct: 280 KNATPGS-------LVHVAKMSLEYLQLGDGLDAPEGIAAIKGMTTLRRLTLTNAKSLGD 332
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+D++ ++G+ L+SL+++ ++TD + LK L L + P
Sbjct: 333 ADLQAVAGIKGLESLELNSVELTDERLPLLKSFSHLKELRIVNRP 377
>gi|406830657|ref|ZP_11090251.1| hypothetical protein SpalD1_03434 [Schlesneria paludicola DSM
18645]
Length = 254
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 91/170 (53%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
LK + LT L++ G +T A + + L SL L L++ Q+SD G + + +L L++
Sbjct: 69 LKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI 128
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRK 319
N I++E + + L L L+L I +EGL L LT+L +NL + ++D +
Sbjct: 129 VGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANV 188
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
L+ L+SL +L+L +I+D GLA+ L LT L + T +G L+
Sbjct: 189 LSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEALK 238
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+SG+ +T++G+ + ++L +L + QISD GL LR L NLT+L N I+
Sbjct: 78 LDVSGTTITNAGMPEIGKLTSLTALYLSKS-QISDAGLSELRSLKNLTTLHIV-GNGISN 135
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+GM++ L L L L R T GL LK L L LN+ N + D LS LT+
Sbjct: 136 EGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSN-LNDDAANVLSELTS 194
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
L +L + ++++D G+A L LT+L + T A ++L
Sbjct: 195 LTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEAL 237
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 11/196 (5%)
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
VN KG K N K+ N +KP LT L +S + +T++G+ + L LT
Sbjct: 53 VNFKGNKKF---NYKYLNL-----LKPFRDLT---WLDVSGTTITNAGMPEIGKLTSLTA 101
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L ++ A L L +L +L L++ +S++G ++ L++L+LG IT+E
Sbjct: 102 LYLSKSQISDAGLSELRSLKNLTTLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEG 161
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L LK LT+L LNL + D+ L+ LT+L +++L ISD L L++L
Sbjct: 162 LHELKKLTHLSDLNLIHSNLNDDAANVLSELTSLTTLHLGRNEISDVGLASFNKLNNLTI 221
Query: 329 LNLDARQITDTGLAAL 344
L + T G AL
Sbjct: 222 LTYQRNKTTLAGEEAL 237
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 24/178 (13%)
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L L L++ IT+ G+ + LT LT L L ++I+D+G + LR+ KNL +L I
Sbjct: 69 LKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI 128
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQ-----------------------NCNLTDKTLEL 416
G G+++ G++ I +L L +L+L + + NL D +
Sbjct: 129 VGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANV 188
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
+S LT L +L++ + I+ GL L NL LT + K T + L+ + LPNL+
Sbjct: 189 LSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEALK-QALPNLM 245
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%)
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
IT+ + + LT+L +L L I D GL L L NL ++++ GIS+ +R + L
Sbjct: 85 ITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHIVGNGISNEGMRSIGEL 144
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
L+ L+L IT+ GL L LT L+ L+L + + D A L +L +L +
Sbjct: 145 DELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANVLSELTSLTTLHLGRNE 204
Query: 384 LTDAGVKHIKDLSSLTLLNLSQN 406
++D G+ L++LT+L +N
Sbjct: 205 ISDVGLASFNKLNNLTILTYQRN 227
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
L+ L L +L+++ +++ G + K+ SL L L ++I+D L L+ L NL
Sbjct: 65 YLNLLKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLT 124
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+L++ GI +EG+ ++ L L ++L T I++ L +L L+ L LNL + D
Sbjct: 125 TLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDD 184
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
L+ LT LT L L I+D G A NL L T AG + +K
Sbjct: 185 AANVLSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEALK 238
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 3/186 (1%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
LK +L L++ I + G+ + LT+L ++ LS + ISD L +L L +L +L++
Sbjct: 69 LKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI 128
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
I++ G+ ++ L L L L IT+ G L+ +L L + L D
Sbjct: 129 VGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANV 188
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+ +L+SLT L+L +N ++D L + L L L ++ T AG LK + L +L
Sbjct: 189 LSELTSLTTLHLGRN-EISDVGLASFNKLNNLTILTYQRNKTTLAGEEALK--QALPNLM 245
Query: 452 LESCKV 457
+ S V
Sbjct: 246 MSSVAV 251
>gi|112961778|gb|ABI28538.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/342 (32%), Positives = 167/342 (48%), Gaps = 52/342 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGL 299
D G + + +L L+L N+I++ L L GLT L L L + I + L LT L
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTAL 215
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLTHLDLF 356
TNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L L +
Sbjct: 216 TNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 265
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+++D + L N N+ L AG I DL+ L
Sbjct: 266 NNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 297
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 111/217 (51%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+N Q++D + + +L L L N+ITD + LK LTNL L L S I D +
Sbjct: 23 MNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--IS 76
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 77 ALSGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 131
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 132 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 184
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 185 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|223698901|gb|ACN19174.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 316
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|290997409|ref|XP_002681274.1| predicted protein [Naegleria gruberi]
gi|284094897|gb|EFC48530.1| predicted protein [Naegleria gruberi]
Length = 237
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 103/208 (49%)
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
++ L L +G N I D + + + L L+L+ I +EG +++ L NL +N+
Sbjct: 4 RMTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNIGN 63
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
I+D + + L +L L + + +IT ++ L LT L++ I D GA ++
Sbjct: 64 NPINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKFIS 123
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
K+L+ L+I G++ G K I +L LT+L +SQN + D+ +IS + L L +
Sbjct: 124 EIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELYIQ 183
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKV 457
+ I +AG + + L L + ++
Sbjct: 184 DCFIGNAGAISISRMDKLTHLDISENEI 211
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 112/233 (48%), Gaps = 1/233 (0%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L +T L +L+I + + D+ + + +++LT L+LE + S+S L +L YLN+
Sbjct: 2 LGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNI 61
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++D+G E ++ +L L + IT + + L NL LN+ IGDEG
Sbjct: 62 GNNPINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKF 121
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLD 354
++ + +L+ +++S GIS + ++ L L L + I D G ++ + L L
Sbjct: 122 ISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELY 181
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ I ++GA + L L+I + G I+D+ L+ L++ C
Sbjct: 182 IQDCFIGNAGAISISRMDKLTHLDISENEIQIEGETVIRDMKHLSYLSIEYQC 234
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 106/215 (49%), Gaps = 1/215 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D+ +K +S + L L + +++ + G + L+ LT LN+ P+ ++S+
Sbjct: 16 NLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNIGNNPINDEGIESIC 75
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L L ++ +++ + SK+ +L LN+ +N I DE + + +L+ L++
Sbjct: 76 QLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKFISEIKSLKILDISL 135
Query: 286 CGIGDEGLVNLTGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
GI G +++ L L + +S GI D R ++ + L L + I + G ++
Sbjct: 136 NGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELYIQDCFIGNAGAISI 195
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
+ + LTHLD+ I G +R+ K+L L I
Sbjct: 196 SRMDKLTHLDISENEIQIEGETVIRDMKHLSYLSI 230
>gi|356505803|ref|XP_003521679.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
Length = 641
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 120/454 (26%), Positives = 212/454 (46%), Gaps = 69/454 (15%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMK 125
VTD GL + C L+ L +C++ISD G++ L L F + +T++ ++
Sbjct: 158 VTDIGLAKIAVGCGKLERLSLKWCLEISDLGIDLL--CKKCLDLKFLDVSYLKVTSESLR 215
Query: 126 AFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDM-KPLSGLTNL 182
+ A L+ L + C+ + GL L KG L+++++ C+C++ S + +SG L
Sbjct: 216 SIASLLKLEVFVMVGCSLVDDVGLRFLEKGCPLLKAIDVSRCDCVSSSGLISVISGHGGL 275
Query: 183 KSLQ--ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQ 239
+ L S+++ + L+ L++L ++ ++G V+ L ++ SL L L++C
Sbjct: 276 EQLDAGYCLSELSAPLVKCLENLKQLRIIRIDGVRVSDFILQTIGTNCKSLVELGLSKCV 335
Query: 240 -LSDDGCEKF-SKIGSLKVLNL---------GFNEITDECLVHLKGLTNLESLNLDSCGI 288
+++ G + S G LK+L+L + I D C +L L L+SC +
Sbjct: 336 GVTNKGIVQLVSGCGYLKILDLTCCRFISDAAISTIADSC-------PDLVCLKLESCDM 388
Query: 289 GDEGLVNLTGL--TNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAAL 344
E + GL + L+ ++L+ +G+ D +LR L+ S L L L I+D GLA +
Sbjct: 389 VTENCLYQLGLNCSLLKELDLTDCSGVDDIALRYLSRCSELVRLKLGLCTNISDIGLAHI 448
Query: 345 T-SLTGLTHLDLFG-ARITDSGAAYL----RNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+ +T LDL+ RI D G A L + NL +L C +TD G+++I L L
Sbjct: 449 ACNCPKMTELDLYRCVRIGDDGLAALTSGCKGLTNL-NLSYC-NRITDRGLEYISHLGEL 506
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL------------KN 446
+ L L N+T G+ ++ +S R+ L+H + + +N
Sbjct: 507 SDLELRGLSNITS---------IGIKAVAISCKRLADLDLKHCEKIDDSGFWALAFYSQN 557
Query: 447 LRSLTLESCKVT-------ANDIKRLQSRDLPNL 473
LR + + C V+ ++KRLQ L L
Sbjct: 558 LRQINMSYCIVSDMVLCMLMGNLKRLQDAKLVCL 591
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 22 EVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKD 79
+++L C+ L L LG ++D + IA + +DL + D GL L
Sbjct: 417 DIALRYLSRCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAALTS 476
Query: 80 -CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLD 137
C L +L+ ++C +I+D GLE++ L L+ L R + IT+ G+KA A L LD
Sbjct: 477 GCKGLTNLNLSYCNRITDRGLEYISHLGELSDLELRGLSNITSIGIKAVAISCKRLADLD 536
Query: 138 LERCTRI-HGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQ----ISCSK 191
L+ C +I G L + L +N+ +C SDM + NLK LQ + SK
Sbjct: 537 LKHCEKIDDSGFWALAFYSQNLRQINMSYC---IVSDMVLCMLMGNLKRLQDAKLVCLSK 593
Query: 192 VTDSGI 197
V+ G+
Sbjct: 594 VSVKGL 599
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 120/477 (25%), Positives = 197/477 (41%), Gaps = 87/477 (18%)
Query: 82 NLQSLDFNFCIQISDG-------------------------------GLEHL-RGLSNLT 109
N+++LD + C +I DG GLE L R L
Sbjct: 64 NIETLDLSMCPRIEDGAVSVVLSQGSASWTRGLRRLVLSRATGLGHVGLEMLIRACPMLE 123
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNC 167
++ + A + L +L++++C + GL + G KLE L++KWC
Sbjct: 124 AVDVSHCWGYGDREAAALSCAARLRELNMDKCLGVTDIGLAKIAVGCGKLERLSLKWCLE 183
Query: 168 ITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL--------------- 211
I+D + L +LK L +S KVT + + L KL + +
Sbjct: 184 ISDLGIDLLCKKCLDLKFLDVSYLKVTSESLRSIASLLKLEVFVMVGCSLVDDVGLRFLE 243
Query: 212 EGCPVTAA-------CLDS------LSALGSLFYLNLNRC--QLSDDGCEKFSKIGSLKV 256
+GCP+ A C+ S +S G L L+ C +LS + + L++
Sbjct: 244 KGCPLLKAIDVSRCDCVSSSGLISVISGHGGLEQLDAGYCLSELSAPLVKCLENLKQLRI 303
Query: 257 LNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNL-TGLTNLESINLSFTG-I 312
+ + ++D L + +L L L C G+ ++G+V L +G L+ ++L+ I
Sbjct: 304 IRIDGVRVSDFILQTIGTNCKSLVELGLSKCVGVTNKGIVQLVSGCGYLKILDLTCCRFI 363
Query: 313 SDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYL 368
SD ++ +A L L L++ +T+ L L + + L LDL + D YL
Sbjct: 364 SDAAISTIADSCPDLVCLKLESCDMVTENCLYQLGLNCSLLKELDLTDCSGVDDIALRYL 423
Query: 369 RNFKNLRSLE--ICGGGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDKTL-ELISGLTGLV 424
L L+ +C ++D G+ HI + +T L+L + + D L L SG GL
Sbjct: 424 SRCSELVRLKLGLC-TNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAALTSGCKGLT 482
Query: 425 SLNVSN-SRITSAGLRHLKPLKNLRSLTLE--------SCKVTANDIKRLQSRDLPN 472
+LN+S +RIT GL ++ L L L L K A KRL DL +
Sbjct: 483 NLNLSYCNRITDRGLEYISHLGELSDLELRGLSNITSIGIKAVAISCKRLADLDLKH 539
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 109/250 (43%), Gaps = 39/250 (15%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
++D + IA L+ + L D VT++ L L +CS L+ LD C + D L +
Sbjct: 363 ISDAAISTIADSCPDLVCLKLESCDMVTENCLYQLGLNCSLLKELDLTDCSGVDDIALRY 422
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLE 158
L S L L I+ G+ A + +LDL RC RI GL L G L
Sbjct: 423 LSRCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAALTSGCKGLT 482
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
+LN+ +CN ++TD G+ Y+ L +L+ L L G +T
Sbjct: 483 NLNLSYCN------------------------RITDRGLEYISHLGELSDLELRGLSNIT 518
Query: 218 AACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIG----SLKVLNLGFNEITDECLVHL 272
+ + +++ + L L+L C+ DD F + +L+ +N+ + ++D L L
Sbjct: 519 SIGIKAVAISCKRLADLDLKHCEKIDD--SGFWALAFYSQNLRQINMSYCIVSDMVLCML 576
Query: 273 KGLTNLESLN 282
G NL+ L
Sbjct: 577 MG--NLKRLQ 584
>gi|430744490|ref|YP_007203619.1| hypothetical protein Sinac_3679 [Singulisphaera acidiphila DSM
18658]
gi|430016210|gb|AGA27924.1| hypothetical protein Sinac_3679 [Singulisphaera acidiphila DSM
18658]
Length = 242
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
F EI + LV N S + D L+ L LTNL+ + L+ + +D L+ L
Sbjct: 53 FQEIAEVSLVRDPFAPN--SFQPINNAKADNLLLQLADLTNLKGVLLTGSQATDQGLKCL 110
Query: 321 AGLSSLKSL-NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
+ + +L+++ ++A ++TD G+ L L+ L L + + +TD+ A + L + +
Sbjct: 111 SQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYSNLTDAAIASIAKHPKLEQILV 170
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G LTDAG+ H+KDL L +L+L+ + LTD LE + L L + V ++++T AG++
Sbjct: 171 RGNRLTDAGLTHLKDLECLQVLDLA-DTGLTDVGLEELRLLAKLRIVCVGDTKVTEAGVQ 229
Query: 440 HLK 442
LK
Sbjct: 230 RLK 232
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 34/184 (18%)
Query: 244 GCEKFSKIGSLKVLNLGF---------NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
G E F +I + ++ F N D L+ L LTNL+ + L D+GL
Sbjct: 49 GEEYFQEIAEVSLVRDPFAPNSFQPINNAKADNLLLQLADLTNLKGVLLTGSQATDQGLK 108
Query: 295 NLTGLTNLESI-NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
L+ + NLE+I + T ++D + L LS L+ L++ +TD +A++ L +
Sbjct: 109 CLSQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYSNLTDAAIASIAKHPKLEQI 168
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTD------------------------AGV 389
+ G R+TD+G +L++ + L+ L++ GLTD AGV
Sbjct: 169 LVRGNRLTDAGLTHLKDLECLQVLDLADTGLTDVGLEELRLLAKLRIVCVGDTKVTEAGV 228
Query: 390 KHIK 393
+ +K
Sbjct: 229 QRLK 232
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 309 FTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
F I++ SL R +S + +N +A+ D L L LT L + L G++ TD G
Sbjct: 53 FQEIAEVSLVRDPFAPNSFQPIN-NAK--ADNLLLQLADLTNLKGVLLTGSQATDQGLKC 109
Query: 368 LRNFKNLRSL-EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L +NL ++ + +TD GV +++ LS L L++S + NLTD + I+ L +
Sbjct: 110 LSQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYS-NLTDAAIASIAKHPKLEQI 168
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
V +R+T AGL HLK L+ L+ L L +T
Sbjct: 169 LVRGNRLTDAGLTHLKDLECLQVLDLADTGLT 200
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 27/189 (14%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT-LLNLEGCPVTAACLDSL 224
N D+ + L+ LTNLK + ++ S+ TD G+ L ++ L ++ +E VT
Sbjct: 76 NAKADNLLLQLADLTNLKGVLLTGSQATDQGLKCLSQMENLENIVTVEATEVTDV----- 130
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+FYL EK SK L+ L++ ++ +TD + + LE + +
Sbjct: 131 ----GVFYL------------EKLSK---LRDLHISYSNLTDAAIASIAKHPKLEQILVR 171
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ D GL +L L L+ ++L+ TG++D L +L L+ L+ + + ++T+ G+ L
Sbjct: 172 GNRLTDAGLTHLKDLECLQVLDLADTGLTDVGLEELRLLAKLRIVCVGDTKVTEAGVQRL 231
Query: 345 TSLTGLTHL 353
+ + HL
Sbjct: 232 KA--AMPHL 238
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 33/185 (17%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL-QISCSKVTDSGIAYLKGLQKL 206
L NLKG++ S TD +K LS + NL+++ + ++VTD G+ YL+ L KL
Sbjct: 89 LTNLKGVLLTGS-------QATDQGLKCLSQMENLENIVTVEATEVTDVGVFYLEKLSKL 141
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L++ +T A + S++ K K+ + V N +TD
Sbjct: 142 RDLHISYSNLTDAAIASIA---------------------KHPKLEQILVRG---NRLTD 177
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL-AGLSS 325
L HLK L L+ L+L G+ D GL L L L + + T +++ +++L A +
Sbjct: 178 AGLTHLKDLECLQVLDLADTGLTDVGLEELRLLAKLRIVCVGDTKVTEAGVQRLKAAMPH 237
Query: 326 LKSLN 330
L+ +
Sbjct: 238 LRVIE 242
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 73/159 (45%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NNA + A L NL + L GL L + LE++ +TD +
Sbjct: 75 NNAKADNLLLQLADLTNLKGVLLTGSQATDQGLKCLSQMENLENIVTVEATEVTDVGVFY 134
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L+ L+ L IS S +TD+ IA + KL + + G +T A L L L L L+L
Sbjct: 135 LEKLSKLRDLHISYSNLTDAAIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDL 194
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
L+D G E+ + L+++ +G ++T+ + LK
Sbjct: 195 ADTGLTDVGLEELRLLAKLRIVCVGDTKVTEAGVQRLKA 233
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 8/149 (5%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L V L+GS TD GL L NL+++ +++D G+ +L LS L L +
Sbjct: 90 TNLKGVLLTGSQATDQGLKCLSQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYS 149
Query: 117 NAITAQGMKAFAGLINLVKLD--LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N A A A + KL+ L R R+ GL +LK L L+ L++ +TD +
Sbjct: 150 NLTDA----AIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLA-DTGLTDVGL 204
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+ L L L+ + + +KVT++G+ LK
Sbjct: 205 EELRLLAKLRIVCVGDTKVTEAGVQRLKA 233
>gi|112961781|gb|ABI28540.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/342 (32%), Positives = 167/342 (48%), Gaps = 52/342 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGL 299
D G + + +L L+L N+I++ L L GLT L L L + I + L LT L
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTAL 215
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTGLTHLDLF 356
TNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT L L +
Sbjct: 216 TNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 265
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+++D + L N N+ L AG I DL+ L
Sbjct: 266 NNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 297
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 111/217 (51%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+N Q++D + + +L L L N+ITD + LK LTNL L L S I D +
Sbjct: 23 MNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--IS 76
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 77 ALSGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 131
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 132 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 184
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 185 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|357627007|gb|EHJ76865.1| hypothetical protein KGM_17936 [Danaus plexippus]
Length = 1323
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 127/467 (27%), Positives = 197/467 (42%), Gaps = 62/467 (13%)
Query: 57 SSLLSVDLSGSDVT--DSGLIHLKDCSNLQSL-----DFNFCIQISDGGLEHLRGLSNLT 109
+L +DLSG+++ + GL L C L+ L + NF S G + L+ LS
Sbjct: 145 PALEELDLSGNNIRGLEEGL--LIGCDVLKVLRLNRNNMNFVPSSSLNGPQSLKVLS--- 199
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGG-LVNLKGLMKLESLNIKWCN 166
R N I F +L ++DL + I GG + LKGL ESL++ N
Sbjct: 200 ----LRENRIGIIRQATFISQKSLQEIDLHGNMISTIEGGAFIGLKGL---ESLDLG-RN 251
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
++ + G+ NL+ L +S + + D LK L LN+ +T L+A
Sbjct: 252 RLSKFNSDVFQGIENLEKLDLSENFIGDFPTVALKLFAGLKHLNMSSNMITNMDHSHLNA 311
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L +L L+L+R L F + LK L++G N + GLT+LE+L L
Sbjct: 312 LSALVVLDLSRNNLVKLSPGTFVGLTELKYLDIGVNSLRTVEDDAFDGLTSLETLLLRDN 371
Query: 287 GIGDEGLVNLTGLTNLESINLSF---TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
I L+ L +L SI+L F T +S LR ++ + SL L I + AA
Sbjct: 372 NILLIPAAALSRLPSLTSIHLGFNRVTALSSDILRAVS--EGINSLVLSRNVIRELPPAA 429
Query: 344 LTSLTGLTHLDLFGA-------------------------RITDSGAAYLRNFKNLRSLE 378
+ HLDL G RI YL+ F NL L+
Sbjct: 430 FEHFKYIRHLDLSGNLLNSITADVFSGLETTLEFLSLSQNRILGFTGEYLK-FVNLWFLD 488
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
I G +++ V + + SLT LN+S N ++ L GL+S+++S+ + + +
Sbjct: 489 ISGNQISEIPVNAFESIKSLTHLNMSHNLHINVLPQNLFDYNEGLLSVDISHVGLKALPV 548
Query: 439 RHLKPLKNLRSLTL------ESCKVTANDIKRLQSRDLP--NLVSFR 477
NL + L E + T ++K L DL N+V+ R
Sbjct: 549 NLFSKTHNLEYIYLSHNLLQEVSEGTFKNLKNLTHLDLSYNNIVTIR 595
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 106/455 (23%), Positives = 182/455 (40%), Gaps = 50/455 (10%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQS--LDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
LLSVD+S + + NL+ L N ++S+G ++L+ NLT L N
Sbjct: 533 LLSVDISHVGLKALPVNLFSKTHNLEYIYLSHNLLQEVSEGTFKNLK---NLTHLDLSYN 589
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N +T + AF ++++ L L+ + G N +++ ++ + + S K
Sbjct: 590 NIVTIR-TPAFVNVMSIQYLSLKGNQLNAFKGEFFNTGTSLEVLDVSDNQLSYLFPSSFK 648
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ + ++ ++ + LQ L ++L G + + L L +
Sbjct: 649 ---IHPRLREIILANNQFNFFPAELISTLQYLEKVDLSGNVLKNVDELDFARLPKLRTIL 705
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EG 292
L R +L F ++ L+L +N I +GL LE LNL + + +
Sbjct: 706 LARNELESVSEMAFHNSTQIQRLDLSYNRIDRLGDRLFEGLIRLELLNLAGNLLYELPDN 765
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLT 351
+ + + L LESI LS L+ L + S++L +I D A + + +
Sbjct: 766 IFDRSRLHMLESIVLSHNLFEHAPLKALQKQYFFVSSVDLSYNEIVDIP-AEDSVMVNIK 824
Query: 352 HLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS--LTLLNLSQN-- 406
LDL F + L K +R L + G G+K++K L + L LNLS N
Sbjct: 825 KLDLSFNPLSEKTIDNVLTEPKTVRELNLAG-----TGIKYVKQLETPFLYRLNLSHNNI 879
Query: 407 CNLTDKTLELIS------------------------GLTGLVSLNVSNSRITSAGLRHLK 442
L +KT + L L LN+SN+ I + +
Sbjct: 880 TKLPEKTFARTTMLESLDLSFNQIGDVSNSLSISWPKLKNLQKLNISNNPIIMVLEGNFE 939
Query: 443 PLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
L +LR L +E+ + I++ R L NLV R
Sbjct: 940 GLISLRFLNMENLE-KCTKIEKNAFRPLSNLVELR 973
>gi|332238073|ref|XP_003268227.1| PREDICTED: F-box/LRR-repeat protein 13 isoform 1 [Nomascus
leucogenys]
Length = 735
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 118/429 (27%), Positives = 195/429 (45%), Gaps = 70/429 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + P D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 247 LQELNVSDCPTFTDESMRHISEGCLGVLYLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 306
Query: 92 IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG + A G+++L
Sbjct: 307 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDN 366
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK +E+C+RI H K L KL + + +TD+ K +
Sbjct: 367 CVKALVEKCSRITSLVFTGAPHISDCTFKALSTCKLRKIRFEGNRRVTDASFKFIDKNYP 426
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-----ACLDSLSALGSLFYLN 234
NL + ++ C +TDS + L L++LT+LNL C LD +++ + LN
Sbjct: 427 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRIGDMGLKQFLDGPASI-RIRELN 485
Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
L+ C QLSD K S + C NL L+L +C + +G
Sbjct: 486 LSNCVQLSDASVMKLS----------------ERC-------PNLNYLSLRNCEHLTAQG 522
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGL 350
+ + + +L SI+LS T IS+ L L+ LK L++ + +ITD G+ A S L
Sbjct: 523 IGYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLIL 582
Query: 351 THLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQN 406
HLD+ + ++++D L + NL SL I G +TD+ ++ + L +L++S
Sbjct: 583 EHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMETLSAKCHYLHILDISGC 642
Query: 407 CNLTDKTLE 415
LTD+ LE
Sbjct: 643 VLLTDQILE 651
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 10/188 (5%)
Query: 83 LQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
++ L+ + C+Q+SD + L NL LS R +TAQG+ + +LV +DL
Sbjct: 481 IRELNLSNCVQLSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGT 540
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIA 198
+ GL L KL+ L++ C ITD ++ S L L+ L +S CS+++D I
Sbjct: 541 DISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLI-LEHLDVSYCSQLSDMIIK 599
Query: 199 YLK-GLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIG--S 253
L LT L++ GCP +T + +++LSA L L+++ C L D + +IG
Sbjct: 600 ALAIYCINLTSLSIAGCPKITDSAMETLSAKCHYLHILDISGCVLLTDQILEDLQIGCKQ 659
Query: 254 LKVLNLGF 261
L++L + +
Sbjct: 660 LRILKMQY 667
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+DLSG+D+++ GL L L+ L + C +I+D G++ +F +++
Sbjct: 531 SLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQ-----------AFCKSS 579
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKP 175
I L LD+ C+++ ++ + + L SL+I C ITDS M+
Sbjct: 580 LI-------------LEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMET 626
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + L L IS C +TD + L+ G ++L +L ++ C
Sbjct: 627 LSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYC 668
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 131/286 (45%), Gaps = 25/286 (8%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL--NLGFNEITD 266
LN C + S+S +L LN++ C D + G L VL NL IT+
Sbjct: 226 LNFRACLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCLGVLYLNLSNTTITN 285
Query: 267 ECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLT---GLTNLESINLS-FTGISDGSLRKL 320
+ L + NL++L+L C D+GL L G L ++LS T IS R +
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 321 A----GLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGA-RITDSGAAYLRNFKNL 374
A G+ L ++N D +TD + AL + +T L GA I+D L K L
Sbjct: 346 ANSCTGIMHL-TIN-DMPTLTDNCVKALVEKCSRITSLVFTGAPHISDCTFKALSTCK-L 402
Query: 375 RSLEICGGG-LTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS- 431
R + G +TDA K I K+ +L+ + ++ +TD +L +S L L LN++N
Sbjct: 403 RKIRFEGNRRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCV 462
Query: 432 RITSAGLRHL--KPLK-NLRSLTLESC-KVTANDIKRLQSRDLPNL 473
RI GL+ P +R L L +C +++ + +L R PNL
Sbjct: 463 RIGDMGLKQFLDGPASIRIRELNLSNCVQLSDASVMKLSER-CPNL 507
>gi|290990770|ref|XP_002678009.1| predicted protein [Naegleria gruberi]
gi|284091619|gb|EFC45265.1| predicted protein [Naegleria gruberi]
Length = 329
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 106/216 (49%), Gaps = 2/216 (0%)
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R + S D + S++ L L + N+I E ++ + L SL++ IG EG +
Sbjct: 113 RLRNSPDKVKFISEMKQLTSLYISDNQIGVEGAKYISEMKQLTSLDITYNQIGVEGSKYI 172
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ + L S+N+ + GI + ++ + L SLN+ QI G ++ + LT LD++
Sbjct: 173 SEMKQLTSLNIYYNGIGVEGTKYISEMKQLTSLNIGYNQIGVEGAKYISEMKQLTSLDIY 232
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I G+ Y+ K L SL I + G K I ++ LT LN++ N + + +
Sbjct: 233 YNGIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKFISEMKQLT-LNITGN-QIGVEGAKF 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
IS + L SL+++ ++I G + + +K L SL +
Sbjct: 291 ISEMKQLTSLDITYNQIGVEGSKFISEMKQLTSLDI 326
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 119/255 (46%), Gaps = 27/255 (10%)
Query: 151 LKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
+K K +N+K+C + +S +K +S + L SL IS +++ G Y+ +++LT
Sbjct: 97 MKSQFKNSIVNVKFCYRLRNSPDKVKFISEMKQLTSLYISDNQIGVEGAKYISEMKQLTS 156
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L++ Q+ +G + S++ L LN+ +N I E
Sbjct: 157 LDI------------------------TYNQIGVEGSKYISEMKQLTSLNIYYNGIGVEG 192
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
++ + L SLN+ IG EG ++ + L S+++ + GI + ++ + L S
Sbjct: 193 TKYISEMKQLTSLNIGYNQIGVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISEMKQLTS 252
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
LN+ QI G ++ + LT L++ G +I GA ++ K L SL+I + G
Sbjct: 253 LNIGYNQIGVEGSKFISEMKQLT-LNITGNQIGVEGAKFISEMKQLTSLDITYNQIGVEG 311
Query: 389 VKHIKDLSSLTLLNL 403
K I ++ LT L++
Sbjct: 312 SKFISEMKQLTSLDI 326
>gi|223698886|gb|ACN19164.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 171/349 (48%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIGD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 227
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 228 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 277
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 278 LQRLFFYNNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 316
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q+ D + + +L
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIGD--ITPLANLTNLT 60
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|443316011|ref|ZP_21045475.1| Leucine Rich Repeat (LRR)-containing protein [Leptolyngbya sp. PCC
6406]
gi|442784393|gb|ELR94269.1| Leucine Rich Repeat (LRR)-containing protein [Leptolyngbya sp. PCC
6406]
Length = 437
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 178/374 (47%), Gaps = 66/374 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ LSG+ ++D + L + L+SL F QI++ ++ L GL NLT LS N
Sbjct: 102 TNLTSLVLSGNQISD--IQPLASLTKLESL-FLESNQITN--IQSLGGLHNLTWLSLSGN 156
Query: 117 NAITAQGMKAFAGL----------INLVKL----DLERCTRIHGGLVNLKGLMKLESLNI 162
+ Q + GL +++ L +LER + +V + L LE L
Sbjct: 157 QVVDVQPLSNLTGLEWLFLDDNQIVDVAPLATLQNLERLLLSYNQIVEIGALSALEKLQN 216
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ N D++PLSGL NL L++ ++V + +
Sbjct: 217 LYLNGNQIEDVQPLSGLRNLAWLELKENQVMN--------------------------IQ 250
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L+ L +L +L L+ Q+ D + + + +LK L L N+ITD + L LTNLESL
Sbjct: 251 PLADLENLRWLGLDDNQIVD--VQPLAALSTLKNLYLNGNQITD--VSSLAALTNLESLV 306
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS---LKSLNLDARQITDT 339
L GD +V++ L+ LE NL+F +S + ++ LS+ L+ L L+ QI D
Sbjct: 307 L-----GDNQIVDIQSLSLLE--NLTFLVLSGNQIVNVSPLSALVRLERLGLNDNQIQD- 358
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
+ L +LT L+ L L +I D L +N+ L + + D ++ + LS L
Sbjct: 359 -VQPLATLTNLSVLVLSNNQIVD--VEPLAALENVGLLSLDHNQIVD--IQPLSQLSRLG 413
Query: 400 LLNLSQNCNLTDKT 413
LL+L+ N L+D++
Sbjct: 414 LLHLAGNP-LSDRS 426
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 152/312 (48%), Gaps = 39/312 (12%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D++PLS LTNL SL +S ++++D I L L KL L LE +T + SL L +L
Sbjct: 94 DVRPLSTLTNLTSLVLSGNQISD--IQPLASLTKLESLFLESNQITN--IQSLGGLHNLT 149
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-----------------LVHLKG 274
+L+L+ Q+ D + S + L+ L L N+I D +V +
Sbjct: 150 WLSLSGNQVVD--VQPLSNLTGLEWLFLDDNQIVDVAPLATLQNLERLLLSYNQIVEIGA 207
Query: 275 LTNLESL-NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L+ LE L NL G E + L+GL NL + L + + ++ LA L +L+ L LD
Sbjct: 208 LSALEKLQNLYLNGNQIEDVQPLSGLRNLAWLELKENQVMN--IQPLADLENLRWLGLDD 265
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QI D + L +L+ L +L L G +ITD + L NL SL + + D ++ +
Sbjct: 266 NQIVD--VQPLAALSTLKNLYLNGNQITD--VSSLAALTNLESLVLGDNQIVD--IQSLS 319
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
L +LT L LS N + L S L L L +++++I ++ L L NL L L
Sbjct: 320 LLENLTFLVLSGNQIVNVSPL---SALVRLERLGLNDNQIQD--VQPLATLTNLSVLVLS 374
Query: 454 SCKVTANDIKRL 465
+ ++ D++ L
Sbjct: 375 NNQIV--DVEPL 384
>gi|430746800|ref|YP_007205929.1| hypothetical protein Sinac_6131 [Singulisphaera acidiphila DSM
18658]
gi|430018520|gb|AGA30234.1| hypothetical protein Sinac_6131 [Singulisphaera acidiphila DSM
18658]
Length = 270
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 5/161 (3%)
Query: 225 SALGSLFYLNLNRCQLSD-DGCEKFSKIGS---LKVLNLGFNE-ITDECLVHLKGLTNLE 279
+A+G F + R + D ++IG ++ L LG + I+D +VHLKG+ +LE
Sbjct: 83 AAIGPDFLGHPYRVVIGPGDAKSVMTQIGQFRRIRTLTLGRDPSISDADMVHLKGMADLE 142
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+L D I GL N GL L +++L ++DG LR L L++ +L LD+ +ITD
Sbjct: 143 ALFFDKGKITGAGLENFAGLPKLHTLSLQGIPLTDGDLRPLEALTNPDALTLDSPRITDV 202
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
GL L L L + L +T +G L + NL L +
Sbjct: 203 GLVHLKHLVPLRFISLNETGVTGAGLGNLADMSNLEILYLV 243
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
++ +L + I+D+DM L G+ +L++L K+T +G+ GL KL L+L+G P
Sbjct: 115 RIRTLTLGRDPSISDADMVHLKGMADLEALFFDKGKITGAGLENFAGLPKLHTLSLQGIP 174
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T L L AL + L L+ + ITD LVHLK L
Sbjct: 175 LTDGDLRPLEALTNPDALTLDSPR------------------------ITDVGLVHLKHL 210
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L ++L+ G+ GL NL ++NLE + L T +S SL + L + N A
Sbjct: 211 VPLRFISLNETGVTGAGLGNLADMSNLEILYLVKTNVS--SLHSIQHLPNWYFANWSA 266
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 26/148 (17%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
ISD + HL+G+++L +L F + IT G++ FAGL L L L+
Sbjct: 127 ISDADMVHLKGMADLEALFFDKGK-ITGAGLENFAGLPKLHTLSLQGIP----------- 174
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+TD D++PL LTN +L + ++TD G+ +LK L L ++L
Sbjct: 175 --------------LTDGDLRPLEALTNPDALTLDSPRITDVGLVHLKHLVPLRFISLNE 220
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLS 241
VT A L +L+ + +L L L + +S
Sbjct: 221 TGVTGAGLGNLADMSNLEILYLVKTNVS 248
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
I+D+ +L+ +L +L G +T AG+++ L L L+L Q LTD L +
Sbjct: 127 ISDADMVHLKGMADLEALFFDKGKITGAGLENFAGLPKLHTLSL-QGIPLTDGDLRPLEA 185
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
LT +L + + RIT GL HLK L LR ++L VT
Sbjct: 186 LTNPDALTLDSPRITDVGLVHLKHLVPLRFISLNETGVT 224
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
ISD + L G++ L++L D +IT GL L L L L G +TD L
Sbjct: 127 ISDADMVHLKGMADLEALFFDKGKITGAGLENFAGLPKLHTLSLQGIPLTDGDLRPLEAL 186
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN-------CNLTDKT-LELISGLTGL 423
N +L + +TD G+ H+K L L ++L++ NL D + LE++ L
Sbjct: 187 TNPDALTLDSPRITDVGLVHLKHLVPLRFISLNETGVTGAGLGNLADMSNLEILY----L 242
Query: 424 VSLNVSN 430
V NVS+
Sbjct: 243 VKTNVSS 249
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%)
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
+ G G + + I + L L ++ +++D + + G+ L +L +IT AGL
Sbjct: 97 VIGPGDAKSVMTQIGQFRRIRTLTLGRDPSISDADMVHLKGMADLEALFFDKGKITGAGL 156
Query: 439 RHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ L L +L+L+ +T D++ L++
Sbjct: 157 ENFAGLPKLHTLSLQGIPLTDGDLRPLEA 185
>gi|357619268|gb|EHJ71912.1| hypothetical protein KGM_06037 [Danaus plexippus]
Length = 453
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 10/240 (4%)
Query: 9 QIFNELVYSRC--LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
Q+ EL + C +TE L A + L L + D+ + +A SL L
Sbjct: 192 QVLFELELTGCNEITEAGLWACLTPRIVSLTLTDCINIADEAVGAVAQLLPSLYEFSLQA 251
Query: 67 SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQG 123
VTD+ L + K ++L L + C ++++ G+ ++ L NLT LS + +T +G
Sbjct: 252 YHVTDAALGYFSPKQSASLSILRLHSCWELTNHGVVNIVHSLPNLTVLSLSGCSKVTDEG 311
Query: 124 MKAFA-GLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPLSGLT 180
++ A L L LDL C R+ + L +LE L + C ITD + +S +
Sbjct: 312 VELLAENLPRLRSLDLSWCPRVTDNALEYIACDLNQLEELTLDRCVHITDIGVGYISTMQ 371
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC 238
+L +L + CS+V D G+ +L G++ L LL+L GCP +T+ L SL L L L L C
Sbjct: 372 SLAALFLRWCSQVRDFGVQHLCGMRSLQLLSLAGCPLLTSGGLSSLIQLRQLRELELTNC 431
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 109/442 (24%), Positives = 183/442 (41%), Gaps = 101/442 (22%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
V KW DV+ S S +GL+ + DC L+S + C+Q
Sbjct: 95 VCTKWRDVLYS------------SPRWWNGLVAVLDCRELRS-ETGCCMQ---------- 131
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
R N++ +G++ F LI+ D+ + + ++ +K
Sbjct: 132 ----------RFYNSVVRRGIRGFV-LISATDDDINELIKQFP-----LSAHHIHAIGLK 175
Query: 164 WCNCITDSDMKP-LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--A 219
C ITD ++ L L L L+++ C+++T++G+ + ++ L L C A A
Sbjct: 176 GCT-ITDRGLESILDHLQVLFELELTGCNEITEAGL-WACLTPRIVSLTLTDCINIADEA 233
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFS--KIGSLKVLNL-GFNEITDECLVHL-KGL 275
L SL+ +L ++D FS + SL +L L E+T+ +V++ L
Sbjct: 234 VGAVAQLLPSLYEFSLQAYHVTDAALGYFSPKQSASLSILRLHSCWELTNHGVVNIVHSL 293
Query: 276 TNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNL 331
NL L+L C + DEG+ L L L S++LS+ ++D +L +A L+ L+ L L
Sbjct: 294 PNLTVLSLSGCSKVTDEGVELLAENLPRLRSLDLSWCPRVTDNALEYIACDLNQLEELTL 353
Query: 332 D-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
D ITD G+ ++++ L A +LR +R D GV+
Sbjct: 354 DRCVHITDIGVGYISTMQSL-------------AALFLRWCSQVR----------DFGVQ 390
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
H+ + SL LL+L+ C L +TS GL L L+ LR L
Sbjct: 391 HLCGMRSLQLLSLA-GCPL-----------------------LTSGGLSSLIQLRQLREL 426
Query: 451 TLESCKVTANDIKRLQSRDLPN 472
L +C + ++ LP
Sbjct: 427 ELTNCPGASPELFDYLHEHLPR 448
>gi|345480032|ref|XP_003424075.1| PREDICTED: F-box/LRR-repeat protein 14-like [Nasonia vitripennis]
Length = 567
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 154/320 (48%), Gaps = 56/320 (17%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ L SL+ + C +SD G+ N+A++ + F+ +L +L
Sbjct: 260 FRGIPKLHSLNLSGCFNMSDAGI----------------NSALS----QPFS---SLTQL 296
Query: 137 DLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKV 192
+L C I + + L LE+L++ C IT+S + ++ GL +L+ L + SC V
Sbjct: 297 NLSYCKHITDASLGKIAQCLKNLETLDLGGCTNITNSGLHVIAWGLKSLRRLDVKSCWHV 356
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI 251
+D GI YL G+ NL +L +L L Q L+D+G S +
Sbjct: 357 SDQGIGYLAGINSDAGGNL-----------------ALEHLGLQDVQRLTDEGLRSIS-L 398
Query: 252 G---SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLTNLESIN 306
G SL+ +NL F +ITD + H+ +T+L L+L +C I + + NL G + + S++
Sbjct: 399 GLATSLQSINLSFCVQITDNGMKHIAKITSLRELDLRNCDISESAMANLAEGGSRISSLD 458
Query: 307 LSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG--ARITD 362
+SF + D +L+ ++ GL +LKSL L A I+D G+ + L G +R+TD
Sbjct: 459 VSFCDKVGDQALQHISQGLFNLKSLGLSACPISDEGIDKIAKTQQDLETLLIGQCSRLTD 518
Query: 363 SGA-AYLRNFKNLRSLEICG 381
+ + LRS+++ G
Sbjct: 519 KSILTIVESMPRLRSIDLYG 538
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 48/245 (19%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSF 113
SSL ++LS +TD+ L + C NL++LD C I++ GL + GL +L L
Sbjct: 291 SSLTQLNLSYCKHITDASLGKIAQCLKNLETLDLGGCTNITNSGLHVIAWGLKSLRRLDV 350
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ ++ QG+ AG+ + + G + LE L ++ +TD +
Sbjct: 351 KSCWHVSDQGIGYLAGINS-----------------DAGGNLALEHLGLQDVQRLTDEGL 393
Query: 174 KPLS-GL-TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ +S GL T+L+S+ +S C ++TD+G+ ++ + L L+L C ++ + + +L+ G
Sbjct: 394 RSISLGLATSLQSINLSFCVQITDNGMKHIAKITSLRELDLRNCDISESAMANLAEGG-- 451
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
S+I SL V F +++ D+ L H+ +GL NL+SL L +C I
Sbjct: 452 ------------------SRISSLDV---SFCDKVGDQALQHISQGLFNLKSLGLSACPI 490
Query: 289 GDEGL 293
DEG+
Sbjct: 491 SDEGI 495
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 39/198 (19%)
Query: 69 VTDSGL--IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+TD GL I L ++LQS++ +FC+QI+D G++H+
Sbjct: 388 LTDEGLRSISLGLATSLQSINLSFCVQITDNGMKHI------------------------ 423
Query: 127 FAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKS 184
A + +L +LDL C + NL +G ++ SL++ +C+ + D ++ +S GL NLKS
Sbjct: 424 -AKITSLRELDLRNCDISESAMANLAEGGSRISSLDVSFCDKVGDQALQHISQGLFNLKS 482
Query: 185 LQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLS 241
L +S ++D GI + K Q L L + C + L + ++ L ++L
Sbjct: 483 LGLSACPISDEGIDKIAKTQQDLETLLIGQCSRLTDKSILTIVESMPRLRSIDLY----- 537
Query: 242 DDGCEKFSKIGSLKVLNL 259
GC K SK K+L L
Sbjct: 538 --GCTKISKFSLEKILKL 553
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 28/205 (13%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNL--TGLTNLESINLSF-TGISDGSLRKLAG-LSSL 326
+G+ L SLNL C + D G+ + ++L +NLS+ I+D SL K+A L +L
Sbjct: 260 FRGIPKLHSLNLSGCFNMSDAGINSALSQPFSSLTQLNLSYCKHITDASLGKIAQCLKNL 319
Query: 327 KSLNLDA-RQITDTGLAALT-SLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGG 383
++L+L IT++GL + L L LD+ ++D G YL + GG
Sbjct: 320 ETLDLGGCTNITNSGLHVIAWGLKSLRRLDVKSCWHVSDQGIGYLAGINS-----DAGGN 374
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GL-TGLVSLNVSN-SRITSAGLRH 440
L +L L L LTD+ L IS GL T L S+N+S +IT G++H
Sbjct: 375 L------------ALEHLGLQDVQRLTDEGLRSISLGLATSLQSINLSFCVQITDNGMKH 422
Query: 441 LKPLKNLRSLTLESCKVTANDIKRL 465
+ + +LR L L +C ++ + + L
Sbjct: 423 IAKITSLRELDLRNCDISESAMANL 447
>gi|149178243|ref|ZP_01856836.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148842892|gb|EDL57262.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 254
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 64/120 (53%)
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ +LS I+D +L+ LAGLS + SLNL ++T GLA L L LTHL L ++ D+
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G +L+ NL L + G +TDAG+ + L L L + Q L L +TGL
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 2/126 (1%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
+L +ITDE L L GL+ ++SLNL + GL L L L ++L T ++D
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ L L +L+ LNL +ITD GL+ L+SL L L ++ ++T L+ +
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQE--QIT 175
Query: 376 SLEICG 381
LE+ G
Sbjct: 176 GLEVIG 181
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+ +L I DE L L GL+ ++S+NL T ++ L +L L +L L+L+ ++ D
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSL 398
GL L L L +L+L+G ITD+G + L + K L+ L + +T AG+ + ++ L
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Query: 399 TLLNLSQNCN 408
++ L +
Sbjct: 178 EVIGLPEEPK 187
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+ +S K+TD + L GL K+ LNL G VT+A L L L +L +L+L + +++D
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLTNL 302
G + ++ +L+ LNL EITD L L L L+ L + + GL +T L
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Query: 303 ESINLS 308
E I L
Sbjct: 178 EVIGLP 183
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
ITD +K L+GL+ + SL + ++VT +G+A L+ L+ LT L+LE V A L L L
Sbjct: 66 ITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQL 125
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK-GLTNLESLNL 283
+L YLNL +++D G + S + LK L + ++T + L+ +T LE + L
Sbjct: 126 PNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGLEVIGL 182
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+L+ +++D+ + + + + LNL E+T L L+ L L L+L+ + D G
Sbjct: 59 FHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAG 118
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT-DTGLAALTSLTGL 350
L +L L NLE +NL T I+D L +L+ L LK L + ++T GLA +TGL
Sbjct: 119 LKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
+ +L ++ITD L L L+ + L+L G +T +G A L++ K L L + + DA
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
G+KH++ L +L LNL + IT AGL L LK L
Sbjct: 118 GLKHLQQLPNLEYLNLY-------------------------GTEITDAGLSQLSSLKKL 152
Query: 448 RSLTLESCKVT 458
+ L + KVT
Sbjct: 153 KRLYVWQTKVT 163
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P +IA+ GS L +L+ +D HL D +I+D L+
Sbjct: 29 PATEQAKAKIIAAGGSVL---ELAQNDDRLEIAFHLSDQ------------KITDETLKT 73
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS + SL+ R +T+ G+ L L L LE+ GL +L+ L LE LN
Sbjct: 74 LAGLSKVDSLNLR-GTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQLPNLEYLN 132
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVT-DSGIAYLKGLQKLTLLNL--EGCPVTA 218
+ + ITD+ + LS L LK L + +KVT +G+A + + L ++ L E PV A
Sbjct: 133 L-YGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGLEVIGLPEEPKPVAA 191
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ +TD+TL+ ++GL+ + SLN+ + +TSAGL L+ LK L L LE KV +K L
Sbjct: 63 DQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHL 122
Query: 466 QSRDLPNL 473
Q LPNL
Sbjct: 123 QQ--LPNL 128
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 358 ARITDSGAAYLRNFKNLRSLEIC----GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
A+I +G + L +N LEI +TD +K + LS + LNL + +T
Sbjct: 36 AKIIAAGGSVLELAQNDDRLEIAFHLSDQKITDETLKTLAGLSKVDSLNL-RGTEVTSAG 94
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
L + L L L++ +++ AGL+HL+ L NL L L ++T + +L S
Sbjct: 95 LAQLQHLKALTHLHLEKTKVNDAGLKHLQQLPNLEYLNLYGTEITDAGLSQLSS 148
>gi|320167357|gb|EFW44256.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 766
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 131/296 (44%), Gaps = 7/296 (2%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT +GLT+L SL +S + +T L +L+ L+L +T ++ +
Sbjct: 93 NQITAISPDAFAGLTSLNSLYLSDNPITSISANAFSDLTELSYLHLSYTQLTDISANAFT 152
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L LNL Q++ F+ + LK L+L N+IT GLT L SL LD+
Sbjct: 153 TLPALVSLNLEFTQITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTALVSLELDN 212
Query: 286 ---CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
I NLT L+ L N TGIS+ + GL++L +L L QIT
Sbjct: 213 NQITSISALAFANLTALSYLGLANNRITGISENTFT---GLTALAALYLLDNQITSISAN 269
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
A T LT LT L L +IT A L L + +T L++L L+
Sbjct: 270 AFTDLTALTTLSLALNQITSISANAFTGLTTLAGLSLALNQITSISTNAFTGLTTLAGLD 329
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L+ N +T + +GLT L L + N++I S L L LTL + T
Sbjct: 330 LALN-QITGISTNAFTGLTTLAVLRLDNNQIASISANAFTGLTMLFYLTLHNNSFT 384
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 123/305 (40%), Gaps = 26/305 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ + GL++L SL + +N IT+ AF+ L L L L
Sbjct: 94 QITAISPDAFAGLTSLNSL-YLSDNPITSISANAFSDLTELSYLHLSYTQLTDISANAFT 152
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L SLN+++ IT + L LK+L ++ +++T + GL L L L+
Sbjct: 153 TLPALVSLNLEFTQ-ITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTALVSLELD 211
Query: 213 GCPVTAACLDSLSALGSLFYLNL--NRC----------------------QLSDDGCEKF 248
+T+ + + L +L YL L NR Q++ F
Sbjct: 212 NNQITSISALAFANLTALSYLGLANNRITGISENTFTGLTALAALYLLDNQITSISANAF 271
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
+ + +L L+L N+IT GLT L L+L I TGLT L ++L+
Sbjct: 272 TDLTALTTLSLALNQITSISANAFTGLTTLAGLSLALNQITSISTNAFTGLTTLAGLDLA 331
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
I+ S GL++L L LD QI A T LT L +L L T
Sbjct: 332 LNQITGISTNAFTGLTTLAVLRLDNNQIASISANAFTGLTMLFYLTLHNNSFTTLPPGLF 391
Query: 369 RNFKN 373
+ +N
Sbjct: 392 KGLRN 396
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 1/205 (0%)
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
K ++L N+IT GLT+L SL L I + LT L ++LS+T ++D
Sbjct: 86 KEVDLQSNQITAISPDAFAGLTSLNSLYLSDNPITSISANAFSDLTELSYLHLSYTQLTD 145
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S L +L SLNL+ QIT AA TSL L +L L +IT + L
Sbjct: 146 ISANAFTTLPALVSLNLEFTQITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTAL 205
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
SLE+ +T +L++L+ L L+ N +T + +GLT L +L + +++IT
Sbjct: 206 VSLELDNNQITSISALAFANLTALSYLGLANN-RITGISENTFTGLTALAALYLLDNQIT 264
Query: 435 SAGLRHLKPLKNLRSLTLESCKVTA 459
S L L +L+L ++T+
Sbjct: 265 SISANAFTDLTALTTLSLALNQITS 289
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 105/253 (41%), Gaps = 31/253 (12%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
++L Q++ + F+ + SL L L N IT LT L L+L + D
Sbjct: 88 VDLQSNQITAISPDAFAGLTSLNSLYLSDNPITSISANAFSDLTELSYLHLSYTQLTDIS 147
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
T L L S+NL FT I+ S L+ LK+L+L+ QIT +A T LT L
Sbjct: 148 ANAFTTLPALVSLNLEFTQITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTALVS 207
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICG---------------------------GGLT 385
L+L +IT A F NL +L G +T
Sbjct: 208 LELDNNQITSISA---LAFANLTALSYLGLANNRITGISENTFTGLTALAALYLLDNQIT 264
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
DL++LT L+L+ N +T + +GLT L L+++ ++ITS L
Sbjct: 265 SISANAFTDLTALTTLSLALN-QITSISANAFTGLTTLAGLSLALNQITSISTNAFTGLT 323
Query: 446 NLRSLTLESCKVT 458
L L L ++T
Sbjct: 324 TLAGLDLALNQIT 336
>gi|195169228|ref|XP_002025427.1| GL11745 [Drosophila persimilis]
gi|194108895|gb|EDW30938.1| GL11745 [Drosophila persimilis]
Length = 393
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 152/358 (42%), Gaps = 42/358 (11%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L NL +F NN I AF GL L LDL +++ V L + L L+I
Sbjct: 4 LPNLVYANFS-NNLIAEVEPNAFRGLKELQFLDLTTNEQVN---VTLGEIANLRYLSIG- 58
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG---CPVTAACL 221
N + D + L GL NL+ L + + + + + L +L LLN+ C + +
Sbjct: 59 NNNVRDFLWRRLRGLPNLEELHLDSNWLENLDMGLFLALPRLRLLNVSNNNLCEIKGSLF 118
Query: 222 DSLSALGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
S L L+ N ++ +D F K+G L+ LNL N+I+ +GL+ LE
Sbjct: 119 TGPSGRAPLLLLDYSSNNVKVLEDSV--FDKLGDLRTLNLWLNQISKIHPRAFQGLSALE 176
Query: 280 SLNLDS---CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
SL L + DE NLT L L+ +S S+R+L SL
Sbjct: 177 SLQLQGNKISALPDEVFSNLTALQRLD--------LSRNSIRQLGARVFGGSL------- 221
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
L LTHLDL I + L +LR L + G LT V+ L
Sbjct: 222 ----------LGRLTHLDLSRNSIVELHPLSLSALPHLRELRLGGNKLTALDVRMFAPLR 271
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNLRSLTLE 453
L +L + +N L +++ L L+++N+R++ L+ + L LR +++E
Sbjct: 272 RLQVLAIGEN-RLEQIEEDMLETFEHLSRLDINNNRLSFLPSLQAAQYLLRLRHISIE 328
>gi|401426392|ref|XP_003877680.1| hypothetical protein, unknown function [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493926|emb|CBZ29217.1| hypothetical protein, unknown function [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 811
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 139/316 (43%), Gaps = 51/316 (16%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGL-------SNLTSLSF 113
DLS + + + L+ C NL LD +F Q GLE L L +++ SL
Sbjct: 472 DLSLAHTRVTNVTELQHCHNLWRLDLQGSFVDQAGIAGLERLPKLRVLLLSKTDVASLEL 531
Query: 114 RRNNAITAQ---------GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIK 163
+A Q AF G+ L T +N G+ K L LN+
Sbjct: 532 ILQSASLEQLEVKFSRVNEKSAFFGVTKASALTYVTLTHCDVSDINNLGMCKELRLLNV- 590
Query: 164 WCNCITDSDMKPLSGLTNLKSLQ---------------ISCSKVT-----DSGIAYLKG- 202
W + +T ++GL + KSLQ +SC+K+ S + L G
Sbjct: 591 WSSKVTSEG---IAGLCDAKSLQEVDLAETAVTDIGPLLSCTKIQALILYKSSVRSLDGI 647
Query: 203 --LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
LQ+L L++ PV++ + SLSA SL LNL+ + DDG + + SLKV+++
Sbjct: 648 GALQRLRRLDIAETPVSS--IRSLSACQSLEILNLSNTAVDDDGFQGIGQAQSLKVVSMS 705
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320
F IT L L ++LE L SC + EGLV L L +NLS+T I G +++L
Sbjct: 706 FTAITQ--LGQLGQCSHLEELYAQSCPVTSEGLVGLEKACCLAKLNLSYTKI-QGGIQRL 762
Query: 321 AGLSSLKSLNLDARQI 336
L LN+ ++
Sbjct: 763 TNCRKLLKLNVKFTEV 778
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 107/442 (24%), Positives = 185/442 (41%), Gaps = 55/442 (12%)
Query: 59 LLSVDLSGSDVTDSGLIHLKD-------------CSNLQSLDFN---FCIQISDG----- 97
L SV LSG +V D+ + HL +N+Q+L IQ+S+
Sbjct: 308 LRSVHLSGCNVKDADVPHLAQLPCVEELLLSRTRITNVQALATGKGLRIIQLSNAQVDSD 367
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G++ L+ L LT L ++ + +L+ L+L + G+ +L L+ L
Sbjct: 368 GIDGLQTLPYLTRLDL---SSTLVSDVNCLGQSQSLIYLNLAKTHVTSEGIADLSRLLTL 424
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
E L + N D+ L+ +LK+L + + V + + LQ L L+L VT
Sbjct: 425 EHLMLNNNNI---RDVSFLAESHSLKTLSLQSTLVDSAALEGFGRLQTLQDLSLAHTRVT 481
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+ L +L+ L+L + G ++ L+VL L ++ L+ +
Sbjct: 482 N--VTELQHCHNLWRLDLQGSFVDQAGIAGLERLPKLRVLLLSKTDVASLELILQSA--S 537
Query: 278 LESLNLDSCGIGDE-GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LE L + + ++ +T + L + L+ +SD + L L+ LN+ + ++
Sbjct: 538 LEQLEVKFSRVNEKSAFFGVTKASALTYVTLTHCDVSD--INNLGMCKELRLLNVWSSKV 595
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGA--------AYLRNFKNLRSLEICGG------ 382
T G+A L L +DL +TD G A + ++RSL+ G
Sbjct: 596 TSEGIAGLCDAKSLQEVDLAETAVTDIGPLLSCTKIQALILYKSSVRSLDGIGALQRLRR 655
Query: 383 -GLTDAGVKHIKDLS---SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
+ + V I+ LS SL +LNLS N + D + I L +++S + IT G
Sbjct: 656 LDIAETPVSSIRSLSACQSLEILNLS-NTAVDDDGFQGIGQAQSLKVVSMSFTAITQLG- 713
Query: 439 RHLKPLKNLRSLTLESCKVTAN 460
L +L L +SC VT+
Sbjct: 714 -QLGQCSHLEELYAQSCPVTSE 734
>gi|46906647|ref|YP_013036.1| internalin [Listeria monocytogenes serotype 4b str. F2365]
gi|405751633|ref|YP_006675098.1| internalin F [Listeria monocytogenes SLCC2378]
gi|424713287|ref|YP_007014002.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
gi|46879912|gb|AAT03213.1| internalin [Listeria monocytogenes serotype 4b str. F2365]
gi|404220833|emb|CBY72196.1| internalin F (LPXTG motif) [Listeria monocytogenes SLCC2378]
gi|424012471|emb|CCO63011.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
Length = 823
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 160/350 (45%), Gaps = 65/350 (18%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK--- 255
+ LQ LT NL L++D S + +L
Sbjct: 136 -ISALQNLT--------------------------NLRELYLNEDNISDISPLANLTKMY 168
Query: 256 VLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
LNLG N ++D L L +T L L + + D + + LT+L S++L++ I D
Sbjct: 169 SLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED 224
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+ LA L+SL QITD + + ++T L L + +ITD L N L
Sbjct: 225 --ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQL 278
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
LEI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++
Sbjct: 279 TWLEIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLG 333
Query: 435 SAGLRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 334 NEDMEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ +T +K + NL
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVTPIANLT 210
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 211 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
TD L L+ L L +L + Q+SD K +
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
LK+LN+G N+I+D + L L+ L SL L++ +G+E + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S++ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKV-----KDVTPIANLTDL 212
>gi|115488994|ref|NP_001066984.1| Os12g0552700 [Oryza sativa Japonica Group]
gi|113649491|dbj|BAF30003.1| Os12g0552700 [Oryza sativa Japonica Group]
Length = 362
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 145/285 (50%), Gaps = 30/285 (10%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKF-SKIG 252
S +A LK LT+L L+G V+++ L ++ +L + L++C ++D+G ++
Sbjct: 7 SNLAKLK--DTLTVLRLDGLEVSSSVLLAIGGCNNLVEIGLSKCNGVTDEGISSLVTQCS 64
Query: 253 SLKVLNL---------GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL-TGLTN 301
L+V++L + I + C + +E L L+SC I ++GL + T N
Sbjct: 65 HLRVIDLTCCNLLTNNALDSIAENCKM-------VEHLRLESCSSISEKGLEQIATSCPN 117
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LTHLDLFGAR 359
L+ I+L+ G++D +L+ LA S L L L I+D GLA ++S G L LDL+
Sbjct: 118 LKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFISSSCGKLIELDLYRCN 177
Query: 360 -ITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
ITD G A L N K ++ L +C +TD+G+ H+ L LT L L +T +
Sbjct: 178 SITDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGISS 237
Query: 417 IS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 458
++ G L+ +++ + AGL L NLR LT+ C+VT
Sbjct: 238 VAIGCKNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVT 282
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 127/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
+++K ++ IA+ +L +DL+ V D+ L HL CS L L C ISD GL +
Sbjct: 103 ISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFIS 162
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A A G K++ LN+
Sbjct: 163 SSCGKLIELDLYRCNSITDDGLAALA-----------------------NGCKKIKMLNL 199
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITDS + L L L +L++ C ++T GI+ V C
Sbjct: 200 CYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGIS----------------SVAIGC- 242
Query: 222 DSLSALGSLFYLNLNRCQLSDD-GCEKFSKIG-SLKVLNLGFNEITDECLVHLKGLTNLE 279
+L ++L RC DD G ++ +L+ L + + ++T L HL L++L
Sbjct: 243 ------KNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 294
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L D +V+L+ ++ +E ++ + G L+KL LS LKS+
Sbjct: 295 CLQ-------DVKMVHLSWVS-IEGFEMALRA-ACGRLKKLKMLSGLKSV 335
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 29/229 (12%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL-TGLTNLESINLSFT 310
+L VL L E++ L+ + G NL + L C G+ DEG+ +L T ++L I+L+
Sbjct: 15 TLTVLRLDGLEVSSSVLLAIGGCNNLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCC 74
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR- 369
+ + +L S+ + + + L + +S I++ G +
Sbjct: 75 NLLTNN--------ALDSIAENCKMVEHLRLESCSS-------------ISEKGLEQIAT 113
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG-LVSLNV 428
+ NL+ +++ G+ DA ++H+ S L +L L +++DK L IS G L+ L++
Sbjct: 114 SCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFISSSCGKLIELDL 173
Query: 429 SN-SRITSAGLRHLK-PLKNLRSLTLESC-KVTANDIKRLQS-RDLPNL 473
+ IT GL L K ++ L L C K+T + + L S +L NL
Sbjct: 174 YRCNSITDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSLEELTNL 222
>gi|226223039|ref|YP_002757146.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|386731175|ref|YP_006204671.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes 07PF0776]
gi|406703195|ref|YP_006753549.1| internalin F (LPXTG motif) [Listeria monocytogenes L312]
gi|225875501|emb|CAS04202.1| Putative internalin, peptidoglycan bound protein (LPXTG motif)
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|384389933|gb|AFH79003.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes 07PF0776]
gi|406360225|emb|CBY66498.1| internalin F (LPXTG motif) [Listeria monocytogenes L312]
Length = 823
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 160/350 (45%), Gaps = 65/350 (18%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK--- 255
+ LQ LT NL L++D S + +L
Sbjct: 136 -ISALQNLT--------------------------NLRELYLNEDNISDISPLANLTKMY 168
Query: 256 VLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
LNLG N ++D L L +T L L + + D + + LT+L S++L++ I D
Sbjct: 169 SLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED 224
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+ LA L+SL QITD + + ++T L L + +ITD L N L
Sbjct: 225 --ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQL 278
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
LEI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++
Sbjct: 279 TWLEIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLG 333
Query: 435 SAGLRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 334 NEDMEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ +T +K + NL
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVTPIANLT 210
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 211 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
TD L L+ L L +L + Q+SD K +
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
LK+LN+G N+I+D + L L+ L SL L++ +G+E + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S++ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKV-----KDVTPIANLTDL 212
>gi|395818901|ref|XP_003782849.1| PREDICTED: F-box/LRR-repeat protein 13 [Otolemur garnettii]
Length = 784
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 117/423 (27%), Positives = 194/423 (45%), Gaps = 78/423 (18%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + + D+ M I+ +L ++LS +++T+ + L + NLQ+L +C
Sbjct: 293 LQELNVSDCSTLTDESMRQISEGCPGVLYLNLSNTNITNRTMRLLPRYFHNLQNLSLAYC 352
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG K A G+++L
Sbjct: 353 RKFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFKNIASSCSGIMHLTINDMPTLTDN 412
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK +E+C RI H K L L + + ITD+ K +
Sbjct: 413 CVKALVEKCLRITSVIFIGAPHISDSTFKALSICSLRKIRFEGNKRITDTCFKLMDKNYP 472
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-----ACLDSLSALGSLFYLN 234
N+ + ++ C +TDS + L L++LT+LNL C LD +++ S+ LN
Sbjct: 473 NISHIYMADCKGITDSSLKPLSHLRRLTVLNLANCMRIGDIGIKHFLDGPASI-SIRELN 531
Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
L+ C QL+D FS + +++D C NL L+L +C + D G
Sbjct: 532 LSNCVQLTD-----FSAM-----------KLSDRCY-------NLNYLSLRNCEHLTDGG 568
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLT-GL 350
L + + +L S++LS T ISD L L+ LK L+L + +ITD G+ A + L
Sbjct: 569 LEYIVNILSLVSVDLSGTKISDEGLLILSKHKKLKELSLSECYKITDIGIQAFCRFSLTL 628
Query: 351 THLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVK---------HIKDLSSL 398
+LD+ + +R++D L + ++ SL I G +TD+G++ HI D+S
Sbjct: 629 EYLDVSYCSRLSDGIIKALAIYCTDITSLIIAGCPKITDSGIEMLSAKCHYVHILDVSGC 688
Query: 399 TLL 401
LL
Sbjct: 689 VLL 691
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 100/419 (23%), Positives = 176/419 (42%), Gaps = 71/419 (16%)
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRR-NNAITAQGMKAF--AGLINLVKLDLERCTR 143
D C QIS L + S ++ F N IT + + + +N+++L+ C
Sbjct: 220 DTVVCSQISHAWLSMTQMSSLWNAIDFSAVKNIITEKYVVSTLQKWRLNVLRLNFRGCLF 279
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGI----A 198
++ L+ LN+ C+ +TD M+ +S G + L +S + +T+ +
Sbjct: 280 RPKTFKSVSACKNLQELNVSDCSTLTDESMRQISEGCPGVLYLNLSNTNITNRTMRLLPR 339
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI---GSLK 255
Y LQ L+L A C L YLNL +GC K + G +
Sbjct: 340 YFHNLQNLSL---------AYCRKFTDK--GLQYLNLG------NGCHKLIYLDLSGCTQ 382
Query: 256 VLNLGFNEITDEC--LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
+ GF I C ++HL + ++ +L + E + +T + I + IS
Sbjct: 383 ISVQGFKNIASSCSGIMHL-TINDMPTLTDNCVKALVEKCLRITSV-----IFIGAPHIS 436
Query: 314 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYLRN 370
D + + L+ + SL+ + + ++ITDT + + ++H+ + + ITDS L +
Sbjct: 437 DSTFKALS-ICSLRKIRFEGNKRITDTCFKLMDKNYPNISHIYMADCKGITDSSLKPLSH 495
Query: 371 FKNLRSLEICG-GGLTDAGVKHIKD-----------------LSSLTLLNLSQNC----- 407
+ L L + + D G+KH D L+ + + LS C
Sbjct: 496 LRRLTVLNLANCMRIGDIGIKHFLDGPASISIRELNLSNCVQLTDFSAMKLSDRCYNLNY 555
Query: 408 -------NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT 458
+LTD LE I + LVS+++S ++I+ GL L K L+ L+L C K+T
Sbjct: 556 LSLRNCEHLTDGGLEYIVNILSLVSVDLSGTKISDEGLLILSKHKKLKELSLSECYKIT 614
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+SVDLSG+ ++D GL+ L L+ L + C +I+D G++ S
Sbjct: 577 SLVSVDLSGTKISDEGLLILSKHKKLKELSLSECYKITDIGIQAFCRFS----------- 625
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM--KLESLNIKWCNCITDSDMKP 175
+ L LD+ C+R+ G++ + + SL I C ITDS ++
Sbjct: 626 -------------LTLEYLDVSYCSRLSDGIIKALAIYCTDITSLIIAGCPKITDSGIEM 672
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + + L +S C +TD + L+ G ++L +L ++ C
Sbjct: 673 LSAKCHYVHILDVSGCVLLTDQMLQSLQIGCKQLRILKMQYC 714
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 112/259 (43%), Gaps = 38/259 (14%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVND---KWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
+++ + +A C+L+ + + D K MD S + D G +TDS L
Sbjct: 435 ISDSTFKALSICSLRKIRFEGNKRITDTCFKLMDKNYPNISHIYMADCKG--ITDSSLKP 492
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L L L+ C++I D G++H L S+S R N + F+ + KL
Sbjct: 493 LSHLRRLTVLNLANCMRIGDIGIKHF--LDGPASISIRELNLSNCVQLTDFSAM----KL 546
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+RC L L+++ C +TD ++ + + +L S+ +S +K++D G
Sbjct: 547 S-DRC-------------YNLNYLSLRNCEHLTDGGLEYIVNILSLVSVDLSGTKISDEG 592
Query: 197 IAYLKGLQKLTLLNLEGCP------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+ L +KL L+L C + A C SL +L YL+++ C DG K
Sbjct: 593 LLILSKHKKLKELSLSECYKITDIGIQAFCRFSL----TLEYLDVSYCSRLSDGIIKALA 648
Query: 251 IGSLKVLNL---GFNEITD 266
I + +L G +ITD
Sbjct: 649 IYCTDITSLIIAGCPKITD 667
>gi|194755016|ref|XP_001959788.1| GF11863 [Drosophila ananassae]
gi|190621086|gb|EDV36610.1| GF11863 [Drosophila ananassae]
Length = 1187
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 156/357 (43%), Gaps = 25/357 (7%)
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
K AGL KL LER L N ++L + N + D+ + + L+NL
Sbjct: 163 KCVAGLFECDKLHLERVP----VLPNYVHTLQLAN------NKLNDTTVLEIRNLSNL-- 210
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
++++ + I GL L L L +T+ ++L AL +L L+L+R QL
Sbjct: 211 IKVTLKRNLLEVIPKFSGLNGLKHLILANNHITSISREALLALPALRTLDLSRNQLHSIE 270
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
F SL L L FNEIT+ + L NL L L++ IG+ + LT L+
Sbjct: 271 ANSFPIPNSLGHLILNFNEITNIDVAAFVPLNNLTDLELNNNQIGNLPVGTFQNLTRLKK 330
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
++L+F + + + GL ++K+L L A +I + + +DL +IT
Sbjct: 331 LSLNFNHL-EINWSTFKGLVAVKNLQLKANRIRALQDGVFYVMRNIESIDLAQNQITSLS 389
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L N LR L + ++ V + L LL+LS N +T+ + + L L
Sbjct: 390 RKELYNLTKLRHLNLSMNAISHIEVDAWEFTQLLELLDLSHNA-ITEFKPQHLDCLQRLK 448
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTL-----------ESCKVTANDIKRLQSRDL 470
+LN++++R+ +KNL L L +S D+++L+ DL
Sbjct: 449 TLNLAHNRLQYLQDNTFNCVKNLEELNLRRNRLSWIIEDQSAAAPFKDLRKLRRLDL 505
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 151/371 (40%), Gaps = 57/371 (15%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRN---------------------NAITAQGMKAFAGLI 131
+++D + +R LSNL ++ +RN N IT+ +A L
Sbjct: 195 KLNDTTVLEIRNLSNLIKVTLKRNLLEVIPKFSGLNGLKHLILANNHITSISREALLALP 254
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L LDL R ++H N + I N IT+ D+ L NL L+++ ++
Sbjct: 255 ALRTLDLSR-NQLHSIEANSFPIPNSLGHLILNFNEITNIDVAAFVPLNNLTDLELNNNQ 313
Query: 192 VTDSGIAYLKGLQKLTLL--NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+ + + + L +L L N + + L A+ +L L NR + DG F
Sbjct: 314 IGNLPVGTFQNLTRLKKLSLNFNHLEINWSTFKGLVAVKNL-QLKANRIRALQDGV--FY 370
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
+ +++ ++L N+IT L LT L LNL I + LE ++LS
Sbjct: 371 VMRNIESIDLAQNQITSLSRKELYNLTKLRHLNLSMNAISHIEVDAWEFTQLLELLDLSH 430
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-----DSG 364
I++ + L L LK+LNL ++ + L L+L R++ S
Sbjct: 431 NAITEFKPQHLDCLQRLKTLNLAHNRLQYLQDNTFNCVKNLEELNLRRNRLSWIIEDQSA 490
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
AA ++ + LR L++ G L K +SS + +SGL L
Sbjct: 491 AAPFKDLRKLRRLDLHGNNL--------KQISS-----------------KAMSGLNNLE 525
Query: 425 SLNVSNSRITS 435
+LN+ ++ + S
Sbjct: 526 TLNLGSNALAS 536
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 120/281 (42%), Gaps = 20/281 (7%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN-AITAQ 122
L+ +++T+ + +NL L+ N QI + + + L+ L LS N+ I
Sbjct: 285 LNFNEITNIDVAAFVPLNNLTDLELNNN-QIGNLPVGTFQNLTRLKKLSLNFNHLEINWS 343
Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
K + NL +L R + G+ + + +ES+++ N IT K L LT L
Sbjct: 344 TFKGLVAVKNL-QLKANRIRALQDGVFYV--MRNIESIDLAQ-NQITSLSRKELYNLTKL 399
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRCQL 240
+ L +S + ++ + + Q L LL+L +T L L L LNL NR Q
Sbjct: 400 RHLNLSMNAISHIEVDAWEFTQLLELLDLSHNAITEFKPQHLDCLQRLKTLNLAHNRLQY 459
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEIT-----DECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
D F+ + +L+ LNL N ++ K L L L+L +
Sbjct: 460 LQDNT--FNCVKNLEELNLRRNRLSWIIEDQSAAAPFKDLRKLRRLDLHGNNLKQISSKA 517
Query: 296 LTGLTNLESINL---SFTGISDGSLRKLAGLSS--LKSLNL 331
++GL NLE++NL + I + + L+ KSLN
Sbjct: 518 MSGLNNLETLNLGSNALASIQPNTFEHMIRLNKFVFKSLNF 558
>gi|158429248|pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 171/349 (48%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 67 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 120
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 121 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 172
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 173 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 225
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 226 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 281
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 282 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 331
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L +++D + L N N+ L AG I DL+ L
Sbjct: 332 LQRLFFANNKVSD--VSSLANLTNINWLS--------AGHNQISDLTPL 370
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 62 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 114
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD + LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 115 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 167
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 168 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 223
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 224 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 277
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 278 ----NISPLAGLTALT 289
>gi|17546075|ref|NP_519477.1| GALA protein 4 [Ralstonia solanacearum GMI1000]
gi|17428371|emb|CAD15058.1| type III effector protein gala6 [Ralstonia solanacearum GMI1000]
Length = 620
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 157/354 (44%), Gaps = 6/354 (1%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L+S++L +++ + G L L SLD + + + G E G + L LS
Sbjct: 259 GAPLVSLNLHNNEIGNEGARVLATSRTLTSLDVSNN-GVGNAGAEAFAGNTVLKQLSLA- 316
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
I+ G +A A +L LDL G L SL + N I +
Sbjct: 317 GGMISGDGAQALADNKSLTDLDLSNNRLGDAGAQALADSESFVSLKLG-GNEIGADGAEA 375
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L+SL +S + + G+ L G KL L+L C + + +L+ SL L L
Sbjct: 376 LARNVVLQSLNLSYNPIGFWGVNAL-GRAKLRKLDLCACAIDSDGASALARNTSLASLYL 434
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ DDG +K +L +LNL N I L +L +L+L GIGD+G
Sbjct: 435 GSNRIGDDGARALAKNSTLTLLNLSGNNIHAVGAQALASNDSLITLDLSRNGIGDDGTAA 494
Query: 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L L S+NLS I ++LA ++L L+L +I G AL T LT L++
Sbjct: 495 LACHPRLTSLNLSRNQIGSTGAQQLAKSATLAELDLSENRIGPEGAEALARSTVLTTLNV 554
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
I ++GA L +L SL+ G+ + G K ++ + +T QN N
Sbjct: 555 SYNAIGEAGARALAESVSLTSLDARRNGIGEDGAKVLEANTRIT--GTPQNPNF 606
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 161/390 (41%), Gaps = 29/390 (7%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+ L G + D L ++Q LD + +I G + L G + L SL+ NN
Sbjct: 214 SLVSLSLIGCGIGDRAAQALVASRSIQCLDLSVN-RIGRDGAQALAG-APLVSLNLH-NN 270
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G + A L LD+ + G G L+ L++ I+ + L+
Sbjct: 271 EIGNEGARVLATSRTLTSLDVSNNGVGNAGAEAFAGNTVLKQLSLA-GGMISGDGAQALA 329
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS------------ 225
+L L +S +++ D+G L + L L G + A ++L+
Sbjct: 330 DNKSLTDLDLSNNRLGDAGAQALADSESFVSLKLGGNEIGADGAEALARNVVLQSLNLSY 389
Query: 226 ---------ALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
ALG L L+L C + DG ++ SL L LG N I D+ L
Sbjct: 390 NPIGFWGVNALGRAKLRKLDLCACAIDSDGASALARNTSLASLYLGSNRIGDDGARALAK 449
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
+ L LNL I G L +L +++LS GI D LA L SLNL
Sbjct: 450 NSTLTLLNLSGNNIHAVGAQALASNDSLITLDLSRNGIGDDGTAALACHPRLTSLNLSRN 509
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
QI TG L L LDL RI GA L L +L + + +AG + + +
Sbjct: 510 QIGSTGAQQLAKSATLAELDLSENRIGPEGAEALARSTVLTTLNVSYNAIGEAGARALAE 569
Query: 395 LSSLTLLNLSQNCNLTD--KTLELISGLTG 422
SLT L+ +N D K LE + +TG
Sbjct: 570 SVSLTSLDARRNGIGEDGAKVLEANTRITG 599
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 116/246 (47%), Gaps = 10/246 (4%)
Query: 220 CLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGS--LKVLNLGFNEITDECLVHLKGLT 276
L++L AL L +L + RC S E + + S LK LNL EI E L
Sbjct: 154 TLEALKALPPELEHLEIGRCTGSAISAEGLAHLASMPLKSLNLNGIEIGVEGARTLAASK 213
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+L SL+L CGIGD L +++ ++LS I + LAG + L SLNL +I
Sbjct: 214 SLVSLSLIGCGIGDRAAQALVASRSIQCLDLSVNRIGRDGAQALAG-APLVSLNLHNNEI 272
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
+ G L + LT LD+ + ++GA L+ L + GG ++ G + + D
Sbjct: 273 GNEGARVLATSRTLTSLDVSNNGVGNAGAEAFAGNTVLKQLSLAGGMISGDGAQALADNK 332
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLT L+LS N L D + ++ VSL + + I + G L R++ L+S
Sbjct: 333 SLTDLDLSNN-RLGDAGAQALADSESFVSLKLGGNEIGADGAEALA-----RNVVLQSLN 386
Query: 457 VTANDI 462
++ N I
Sbjct: 387 LSYNPI 392
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 158/379 (41%), Gaps = 31/379 (8%)
Query: 92 IQISDGGLEHLRGLSNLTSL-SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
+ ISD + R LS +L S R +T + +KA L L++ RCT G ++
Sbjct: 127 LTISDPAM--FRQLSLYPALKSVRFKGELTLEALKALP--PELEHLEIGRCT---GSAIS 179
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+GL L S+ LKSL ++ ++ G L + L L+
Sbjct: 180 AEGLAHLASMP--------------------LKSLNLNGIEIGVEGARTLAASKSLVSLS 219
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L GC + +L A S+ L+L+ ++ DG + + L LNL NEI +E
Sbjct: 220 LIGCGIGDRAAQALVASRSIQCLDLSVNRIGRDGAQALAG-APLVSLNLHNNEIGNEGAR 278
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L L SL++ + G+G+ G G T L+ ++L+ IS + LA SL L+
Sbjct: 279 VLATSRTLTSLDVSNNGVGNAGAEAFAGNTVLKQLSLAGGMISGDGAQALADNKSLTDLD 338
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L ++ D G AL L L G I GA L L+SL + + GV
Sbjct: 339 LSNNRLGDAGAQALADSESFVSLKLGGNEIGADGAEALARNVVLQSLNLSYNPIGFWGVN 398
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+ + L L+L C + ++ T L SL + ++RI G R L L L
Sbjct: 399 ALGR-AKLRKLDLCA-CAIDSDGASALARNTSLASLYLGSNRIGDDGARALAKNSTLTLL 456
Query: 451 TLESCKVTANDIKRLQSRD 469
L + A + L S D
Sbjct: 457 NLSGNNIHAVGAQALASND 475
>gi|115486928|ref|NP_001065951.1| Os12g0108500 [Oryza sativa Japonica Group]
gi|108862085|gb|ABA96188.2| Leucine Rich Repeat family protein, expressed [Oryza sativa
Japonica Group]
gi|113648458|dbj|BAF28970.1| Os12g0108500 [Oryza sativa Japonica Group]
Length = 677
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 129/490 (26%), Positives = 222/490 (45%), Gaps = 86/490 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT---------------------- 70
L++L L GV +D++A + + L +DLS + +
Sbjct: 189 LRELSLKWCIGVTHLGLDLLALKCNKLNILDLSYTMIVKKCFPAIMKLQNLQVLLLVGCN 248
Query: 71 ---DSGLIHL-KDCS-NLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNNAITAQGM 124
D L L ++CS +LQ LD + ++ G L ++ + NL L+ + +T
Sbjct: 249 GIDDDALTSLDQECSKSLQVLDMSNSYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMS 308
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMK-PLSGLTNL 182
+F + L KL L+ C + GL ++ K + L L++ C+ +TD+D+ + L NL
Sbjct: 309 SSFEMIHKLQKLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNL 368
Query: 183 KSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-- 238
L ++ C K+TD +A + L L +E C + ++ L +G RC
Sbjct: 369 LKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSS--KGLQLIG-------RRCTH 419
Query: 239 ---------QLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHL-KGLTNLESLNLDSCG 287
L D+G + S L L +G ITDE L H+ K +L ++L G
Sbjct: 420 LEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSG 479
Query: 288 -IGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 343
I DEG+ ++ G LESIN+S+ T ++D SLR L+ L +L + ++ GL+
Sbjct: 480 AISDEGVTHIAQGCPMLESINMSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSE 539
Query: 344 L-TSLTGLTHLDLFGA-RITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+ T L+ LD+ I D G +L F NLR + + +TD G L
Sbjct: 540 IATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIG-----------L 588
Query: 401 LNLSQNCNLTDKTLELISGLT--GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
++LS C L + T+ ++G+T GL+ + + GLR +K + +S+ V
Sbjct: 589 ISLSSICGLQNMTIVHLAGVTPNGLI------AALMVCGLRKVKLHEAFKSM------VP 636
Query: 459 ANDIKRLQSR 468
++ +K +++R
Sbjct: 637 SHMLKVVEAR 646
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 129/283 (45%), Gaps = 28/283 (9%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFN 89
+L++L L + GV D + + + +LL +D++ +TD L + C +L SL
Sbjct: 341 SLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRME 400
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGL 148
C +S GL+ + + + +G+KA +G L L + C RI GL
Sbjct: 401 SCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGL 460
Query: 149 VNL-KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQK 205
++ K L +++ I+D + ++ G L+S+ +S C+K+TD + L K
Sbjct: 461 RHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINMSYCTKLTDCSLRSLSKCIK 520
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L + GCP+ ++ LS + + GC SK+ K EI
Sbjct: 521 LNTLEIRGCPMVSS--AGLSEIAT--------------GCRLLSKLDIKKCF-----EIN 559
Query: 266 DECLVHLKGLT-NLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
D ++ L + NL +NL C + D GL++L+ + L+++ +
Sbjct: 560 DMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTI 602
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 112/400 (28%), Positives = 172/400 (43%), Gaps = 66/400 (16%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD GL + C +L+ L +CI ++ GL+ L +L + N
Sbjct: 174 ITDMGLGCIAVGCPDLRELSLKWCIGVTHLGLD-------LLALKCNKLNI--------- 217
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LDL + + L L+ L + CN I D + L + KSLQ+
Sbjct: 218 --------LDLSYTMIVKKCFPAIMKLQNLQVLLLVGCNGIDDDALTSLDQECS-KSLQV 268
Query: 188 ----SCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLS 241
+ VT G+ + +K + L LNL C PVT + S + L L L+ CQ
Sbjct: 269 LDMSNSYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMSSSFEMIHKLQKLKLDGCQFM 328
Query: 242 DDGCEKFSK-IGSLKVLNLG-FNEITDECLVH-LKGLTNLESLNLDSC-GIGDEGLVNLT 297
DDG + K SL+ L+L + +TD L + L NL L++ C I D L +T
Sbjct: 329 DDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAIT 388
Query: 298 GLTNLES-INLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-------------TGLAA 343
T+ S I+L S L S K L L R+ T GL A
Sbjct: 389 --TSCPSLISLRMESCS---------LVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKA 437
Query: 344 LTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGVKHI-KDLSSLT 399
L+ + L+ L + RITD G ++ ++ +LR +++ G ++D GV HI + L
Sbjct: 438 LSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLE 497
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGL 438
+N+S LTD +L +S L +L + ++SAGL
Sbjct: 498 SINMSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGL 537
>gi|430743420|ref|YP_007202549.1| hypothetical protein Sinac_2547 [Singulisphaera acidiphila DSM
18658]
gi|430015140|gb|AGA26854.1| hypothetical protein Sinac_2547 [Singulisphaera acidiphila DSM
18658]
Length = 356
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 5/223 (2%)
Query: 169 TDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSA 226
T++ M + L+ L+ L + SK+T++G+ +L+ L +L +++L P VT L L+
Sbjct: 121 TNATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHLAE 180
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
L SL LNL+ D + G N ITDE L +LKGLT L L L +
Sbjct: 181 LTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGITDEGLANLKGLTELRELILRN 240
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+ GL L G+ + + L + + +L L ++ LKSL + + D GL +
Sbjct: 241 SQVTGTGLTALQGMIAMADLKLINSHLE--TLEPLQRMTGLKSLWIHRSPLDDRGLKHVE 298
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
+L L +L L RITD G L + + LR ++ G G+T G
Sbjct: 299 NLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGVTIMG 341
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 13/221 (5%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG---IGDEGLVNLTGLTNLESINL 307
GS+K +LG ++ T+ + H+ L+ LE LD+ G + + GLV+L LT L ++L
Sbjct: 108 FGSVKQASLG-SQATNATMSHVGRLSQLE--ELDATGGSKLTNAGLVHLQSLTRLRMVDL 164
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR--ITDSG 364
S G++ L LA L+SL+ LNL + + D L L+ LT L L L G ITD G
Sbjct: 165 SLLPGVTGKGLIHLAELTSLERLNLSS-PVADADLVNLSRLTNLRLLRLNGGGNGITDEG 223
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
A L+ LR L + +T G+ ++ + ++ L L N +L +TLE + +TGL
Sbjct: 224 LANLKGLTELRELILRNSQVTGTGLTALQGMIAMADLKLI-NSHL--ETLEPLQRMTGLK 280
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
SL + S + GL+H++ LK+L+ L+LE ++T + +K L
Sbjct: 281 SLWIHRSPLDDRGLKHVENLKSLQYLSLEDTRITDDGLKSL 321
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 112/263 (42%), Gaps = 58/263 (22%)
Query: 227 LGSLFYLNLNRCQLSDDGCEK-FSKIGSLKVLN----LGFNEITDECLVHLKGLTNLESL 281
LG ++ ++ + L S +G L L G +++T+ LVHL+ LT L +
Sbjct: 103 LGPDYFGSVKQASLGSQATNATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRLRMV 162
Query: 282 NLDS-CGIGDEGLVNLTGLTNLESINLSFT-------------------------GISDG 315
+L G+ +GL++L LT+LE +NLS GI+D
Sbjct: 163 DLSLLPGVTGKGLIHLAELTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGITDE 222
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L L GL+ L+ L L Q+T TGL AL + + L L + + L+ L+
Sbjct: 223 GLANLKGLTELRELILRNSQVTGTGLTALQGMIAMADLKLINSHLET--LEPLQRMTGLK 280
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
SL I L D G+KH+++L SL L+L ++RIT
Sbjct: 281 SLWIHRSPLDDRGLKHVENLKSLQYLSLE-------------------------DTRITD 315
Query: 436 AGLRHLKPLKNLRSLTLESCKVT 458
GL+ L L+ LR + VT
Sbjct: 316 DGLKSLLDLRGLREVDARGTGVT 338
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 104/223 (46%), Gaps = 27/223 (12%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
GS +T++GL+HL+ + L+ +D + ++ GL HL L++L L+
Sbjct: 142 GSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHLAELTSLERLNL--------SSPV 193
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A A L+NL +L R R++GG N ITD + L GLT L+ L
Sbjct: 194 ADADLVNLSRLTNLRLLRLNGG-----------------GNGITDEGLANLKGLTELREL 236
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+ S+VT +G+ L+G+ + L L + L+ L + L L ++R L D G
Sbjct: 237 ILRNSQVTGTGLTALQGMIAMADLKLINSHL--ETLEPLQRMTGLKSLWIHRSPLDDRGL 294
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+ + SL+ L+L ITD+ L L L L ++ G+
Sbjct: 295 KHVENLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGV 337
>gi|254825773|ref|ZP_05230774.1| internalin [Listeria monocytogenes FSL J1-194]
gi|293595017|gb|EFG02778.1| internalin [Listeria monocytogenes FSL J1-194]
Length = 823
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 160/350 (45%), Gaps = 65/350 (18%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK--- 255
+ LQ LT NL L++D S + +L
Sbjct: 136 -ISALQNLT--------------------------NLRELYLNEDNISDISPLANLTKMY 168
Query: 256 VLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
LNLG N ++D L L +T L L + + D + + LT+L S++L++ I D
Sbjct: 169 SLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED 224
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+ LA L+SL QITD + + ++T L L + +ITD L N L
Sbjct: 225 --ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQL 278
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
LEI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++
Sbjct: 279 TWLEIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLG 333
Query: 435 SAGLRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 334 NEDMEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ +T +K + NL
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVTPIANLT 210
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 211 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
TD L L+ L L +L + Q+SD K +
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
LK+LN+G N+I+D + L L+ L SL L++ +G+E + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S++ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKV-----KDVTPIANLTDL 212
>gi|224140535|ref|XP_002323638.1| predicted protein [Populus trichocarpa]
gi|222868268|gb|EEF05399.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 112/391 (28%), Positives = 181/391 (46%), Gaps = 43/391 (10%)
Query: 42 PGVNDKWMDVIASQ-GSSLLSVDLSGSDV-TDSGLIHLK-DCSNLQSLDFNFCIQISDGG 98
P +ND ++VI++ SL S+DLS S + +GL+ L +C NL S+D + ++ D
Sbjct: 87 PRINDNSLNVISNTCKDSLNSIDLSRSRFFSYNGLMSLASNCKNLVSIDLSNATELRDAA 146
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ + NL L R IT G+ A G KL
Sbjct: 147 AAAVAEVKNLERLWLGRCKLITDMGIGCIA-----------------------VGCKKLR 183
Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+++KWC ++D + ++ ++SL +S +T+ + + LQ L + LEGC
Sbjct: 184 LISLKWCIGVSDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDIVLEGCFGI 243
Query: 218 AACLDSLSAL----GSLFYLNLNRCQ-LSDDGCEK-FSKIGSLKVLNLGFN-EITDECLV 270
DSL+AL S+ L+++ CQ +S G S GSL+ L L ++ +T
Sbjct: 244 DD--DSLAALKHGCKSMKALDISSCQHISHVGLSSLISGAGSLQQLTLSYSCPVTLALAN 301
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNL-TGLTNLESINLS-FTGISDGSLRKLA-GLSSLK 327
LK L+ L+S+ LD C + GL + L ++LS G++D L L LK
Sbjct: 302 SLKRLSMLQSVKLDGCAVTSAGLTAIGNWCITLSELSLSKCVGVTDEGLSSLVTKHKDLK 361
Query: 328 SLNLD-ARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYL--RNFKNLRSLEICGGG 383
L++ R+ITD +A +T S T LT L + + S A L + + L L++
Sbjct: 362 KLDITCCRKITDVSIAYITNSCTNLTSLRMESCTLVPSEAFVLIGQRCQFLEELDLTDNE 421
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ D G+K I S L+ L L N++D+ L
Sbjct: 422 IDDEGLKSISRCSKLSSLKLGICLNISDEGL 452
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 117/408 (28%), Positives = 187/408 (45%), Gaps = 49/408 (12%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDS------GLIHLKD----------------- 79
GV+D + +IA + + S+DLS +T+ L HL+D
Sbjct: 192 GVSDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDIVLEGCFGIDDDSLAAL 251
Query: 80 ---CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
C ++++LD + C IS GL L G +L L+ + +T + L L
Sbjct: 252 KHGCKSMKALDISSCQHISHVGLSSLISGAGSLQQLTLSYSCPVTLALANSLKRLSMLQS 311
Query: 136 LDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKV 192
+ L+ C GL + + L L++ C +TD + L + +LK L I+ C K+
Sbjct: 312 VKLDGCAVTSAGLTAIGNWCITLSELSLSKCVGVTDEGLSSLVTKHKDLKKLDITCCRKI 371
Query: 193 TDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEK 247
TD IAY+ LT L +E C + + ++ +G L L+L ++ D+G +
Sbjct: 372 TDVSIAYITNSCTNLTSLRMESCTLVPS--EAFVLIGQRCQFLEELDLTDNEIDDEGLKS 429
Query: 248 FSKIGSLKVLNLGFN-EITDECLVHL-KGLTNLESLNL-DSCGIGDEGLVNLT-GLTNLE 303
S+ L L LG I+DE L H+ + L L+L S GI D G++ ++ G LE
Sbjct: 430 ISRCSKLSSLKLGICLNISDEGLSHVGMKCSKLTELDLYRSAGITDLGILAISRGCPGLE 489
Query: 304 SINLSF-TGISDGSLRKLAGLSSLKSL-NLDARQITDTGLAAL-TSLTGLTHLDLFGAR- 359
IN+S+ I+D SL L+ S L + + IT GLAA+ L LD+
Sbjct: 490 MINMSYCIDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKKCHN 549
Query: 360 ITDSGAAYLRNF-KNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNL 403
I D+ L +F +NLR + + +TD G + I L S+T+L+L
Sbjct: 550 IGDAAMLPLAHFSQNLRQITLSYSSVTDVGLLALASISCLQSMTVLHL 597
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 33/196 (16%)
Query: 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLT 109
+I + L +DL+ +++ D GL + CS L SL C+ ISD GL H+ S LT
Sbjct: 404 LIGQRCQFLEELDLTDNEIDDEGLKSISRCSKLSSLKLGICLNISDEGLSHVGMKCSKLT 463
Query: 110 SLSFRRNNAITAQGMKAFA------GLINLVK-LDLE--------RCTRIHG-------- 146
L R+ IT G+ A + +IN+ +D+ +C+R++
Sbjct: 464 ELDLYRSAGITDLGILAISRGCPGLEMINMSYCIDITDSSLLSLSKCSRLNTFESRGCPL 523
Query: 147 ----GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSG---I 197
GL + G +L L+IK C+ I D+ M PL+ + NL+ + +S S VTD G +
Sbjct: 524 ITSLGLAAIAVGCKQLIKLDIKKCHNIGDAAMLPLAHFSQNLRQITLSYSSVTDVGLLAL 583
Query: 198 AYLKGLQKLTLLNLEG 213
A + LQ +T+L+L+G
Sbjct: 584 ASISCLQSMTVLHLKG 599
>gi|428173790|gb|EKX42690.1| hypothetical protein GUITHDRAFT_73681, partial [Guillardia theta
CCMP2712]
Length = 439
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 161/341 (47%), Gaps = 6/341 (1%)
Query: 119 ITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T+ + F GL +L L+L R + + G+ GL L+ L + N + +
Sbjct: 6 LTSLPLGVFNGLSSLQTLELSNNRLSSLSEGV--FSGLSALQFLQLH-HNALLNLPSNVF 62
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
GL++L+ L + + ++ G KGL L L+L ++ DS + SL L+L
Sbjct: 63 DGLSSLQQLYVHNNVLSTLGPNTFKGLASLQNLDLSYNQLSTLPPDSFNGSSSLQTLSLF 122
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++++ + F + LK L L N+++ GL+ L+ L+L + +
Sbjct: 123 SNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSNAF 182
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GL+ L+ ++L+ ISD SL GLS LK+LNL++ Q++ A L+ L L L
Sbjct: 183 SGLSVLQELDLNNNQISDISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQLD 242
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G RI+ L L + L + LS+L LL++ QN ++ +
Sbjct: 243 GNRISSISMDAFDGLSALEELHMSFNQLQTVLSSNFNGLSALKLLDI-QNNQISSISSGA 301
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
+GLT L SL+++ +++TS L+ L SL L S ++
Sbjct: 302 FNGLTALTSLSLNGNKLTSIPAGVFDGLQYLESLILSSNQL 342
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 160/352 (45%), Gaps = 12/352 (3%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
K ++LQ+LD ++ Q+S + G S+L +LS N IT AF GL L L
Sbjct: 86 FKGLASLQNLDLSYN-QLSTLPPDSFNGSSSLQTLSLFSN-KITNISSDAFRGLPGLKYL 143
Query: 137 DL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L + + + G+ GL L+ L++ + N +T SGL+ L+ L ++ ++++D
Sbjct: 144 GLFDNQLSSLSEGV--FSGLSGLQILSL-YNNRVTSLPSNAFSGLSVLQELDLNNNQISD 200
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
++ GL L LNL +++ ++ L +L L L+ ++S + F + +L
Sbjct: 201 ISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQLDGNRISSISMDAFDGLSAL 260
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
+ L++ FN++ + GL+ L+ L++ + I GLT L S++L+ ++
Sbjct: 261 EELHMSFNQLQTVLSSNFNGLSALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTS 320
Query: 315 GSLRKLAGLSSLKSLNLDARQ---ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
GL L+SL L + Q I+ A+L L L L L ++T
Sbjct: 321 IPAGVFDGLQYLESLILSSNQLECISSNAFASLLFLN-LEELYLSYNQLTSLPLGVFNGL 379
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
L +L + + + LSSL LNL N L L L GLT L
Sbjct: 380 SKLVTLTLSNNHVKELPAGVFNGLSSLKFLNLGHN-ELESLPLNLFDGLTSL 430
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 151/343 (44%), Gaps = 46/343 (13%)
Query: 15 VYSRCLTEVSLEAFR-----------DCALQDLCLGQYPGVND-KWMDVIASQGSSLLSV 62
++S +T +S +AFR D L L G + G++ + + + ++ +SL S
Sbjct: 121 LFSNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSN 180
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
SG V LQ LD N QISD L GLS L +L+ N +++
Sbjct: 181 AFSGLSV-------------LQELDLN-NNQISDISLSAFNGLSGLKTLNLNSN-QLSSL 225
Query: 123 GMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AF GL L +L L+ R + I + GL LE L++ + N + +GL+
Sbjct: 226 PSNAFFGLSALQQLQLDGNRISSI--SMDAFDGLSALEELHMSF-NQLQTVLSSNFNGLS 282
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNR 237
LK L I ++++ GL LT L+L G +T A D L L SL L+
Sbjct: 283 ALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTSIPAGVFDGLQYLESLI---LSS 339
Query: 238 CQLSDDGCEKFSKIGSLKVLNL-----GFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
QL C + SL LNL +N++T L GL+ L +L L + + +
Sbjct: 340 NQLE---CISSNAFASLLFLNLEELYLSYNQLTSLPLGVFNGLSKLVTLTLSNNHVKELP 396
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
GL++L+ +NL + L GL+SL+ + L+ Q
Sbjct: 397 AGVFNGLSSLKFLNLGHNELESLPLNLFDGLTSLEQVTLEWNQ 439
>gi|371942086|gb|AEX60855.1| truncated internaline [Listeria monocytogenes]
gi|371942128|gb|AEX60876.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 171/349 (48%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE +++ L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L G I DL+ L
Sbjct: 363 LQRLFFYNNKVSD--VSSLANLTNINWLS--------DGHNQISDLTPL 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L ++ N + +T L L L + +N Q++D + + +L
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L L N+ITD L LK LTNL L L S I D + L+GLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|254854137|ref|ZP_05243485.1| internalin [Listeria monocytogenes FSL R2-503]
gi|258607527|gb|EEW20135.1| internalin [Listeria monocytogenes FSL R2-503]
Length = 824
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 160/350 (45%), Gaps = 65/350 (18%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK--- 255
+ LQ LT NL L++D S + +L
Sbjct: 136 -ISALQNLT--------------------------NLRELYLNEDNISDISPLANLTKMY 168
Query: 256 VLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
LNLG N ++D L L +T L L + + D + + LT+L S++L++ I D
Sbjct: 169 SLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED 224
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+ LA L+SL QITD + + ++T L L + +ITD L N L
Sbjct: 225 --ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQL 278
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
LEI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++
Sbjct: 279 TWLEIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLG 333
Query: 435 SAGLRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 334 NEDMEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ +T +K + NL
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVTPIANLT 210
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 211 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
TD L L+ L L +L + Q+SD K +
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
LK+LN+G N+I+D + L L+ L SL L++ +G+E + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S++ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKV-----KDVTPIANLTDL 212
>gi|300765671|ref|ZP_07075649.1| internalin [Listeria monocytogenes FSL N1-017]
gi|404279969|ref|YP_006680867.1| internalin F [Listeria monocytogenes SLCC2755]
gi|404285784|ref|YP_006692370.1| internalin F [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|300513659|gb|EFK40728.1| internalin [Listeria monocytogenes FSL N1-017]
gi|404226604|emb|CBY48009.1| internalin F (LPXTG motif) [Listeria monocytogenes SLCC2755]
gi|404244713|emb|CBY02938.1| internalin F (LPXTG motif) [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 823
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 160/350 (45%), Gaps = 65/350 (18%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK--- 255
+ LQ LT NL L++D S + +L
Sbjct: 136 -ISALQNLT--------------------------NLRELYLNEDNISDISPLANLTKMY 168
Query: 256 VLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
LNLG N ++D L L +T L L + + D + + LT+L S++L++ I D
Sbjct: 169 SLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED 224
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+ LA L+SL QITD + + ++T L L + +ITD L N L
Sbjct: 225 --ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQL 278
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
LEI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++
Sbjct: 279 TWLEIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLG 333
Query: 435 SAGLRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 334 NEDMEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ +T +K + NL
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVTPIANLT 210
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 211 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
TD L L+ L L +L + Q+SD K +
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
LK+LN+G N+I+D + L L+ L SL L++ +G+E + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S++ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKV-----KDVTPIANLTDL 212
>gi|71657215|ref|XP_817126.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70882298|gb|EAN95275.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 835
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 107/401 (26%), Positives = 184/401 (45%), Gaps = 39/401 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L ++ L + +++ +++L +C +L+ + N C + LE L L LT LS N
Sbjct: 193 SNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLR--SLECLSSLQRLTELSLL-N 249
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +G+ AF + RC + + L MKL+ +N L
Sbjct: 250 MGITEEGL-AF----------ISRCNSLRH--IQLDNCMKLQGINC-------------L 283
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L++L +S ++V+D GI L L+ L L L ++ ++ + L L L+L
Sbjct: 284 GSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVSFNRLSS-VEPVLCLDKLLELDLT 342
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++D+GC + G ++ L L + + + LT+L L+L + L L
Sbjct: 343 ENWVTDEGCAALANCGQIQKLKLASCRCVSD-VRWICALTSLRFLDLSKTHVRSADLQLL 401
Query: 297 TGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
T LE +++ S +G+ D S + GL SL L+L I D G +L T LT L L
Sbjct: 402 TMCQRLEELHVASCSGVKDASF--VEGLLSLGHLDLTDTSIKDAGTRSLRKCTALTFLSL 459
Query: 356 FGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
R +TD ++ +NL +L + G + DA + + + L +L+L LTD +
Sbjct: 460 QDCRFLTD--IQFVEPLRNLLNLNLEGTEVVDANIIPLMHCTKLEVLSLRHCLFLTD--V 515
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+ L L SL++S + +T G+ + +L + L C
Sbjct: 516 RCLRELKALKSLDLSGTYVTDEGVSDVSQCISLERIDLSEC 556
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 111/443 (25%), Positives = 186/443 (41%), Gaps = 80/443 (18%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
LL +DL+ + VTD G L +C +Q L C +SD +R + LTSL F
Sbjct: 336 LLELDLTENWVTDEGCAALANCGQIQKLKLASCRCVSD-----VRWICALTSLRF----- 385
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
LDL + L L +LE L++ C+ + D+ + G
Sbjct: 386 -----------------LDLSKTHVRSADLQLLTMCQRLEELHVASCSGVKDASF--VEG 426
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-----------------------EGCP 215
L +L L ++ + + D+G L+ LT L+L EG
Sbjct: 427 LLSLGHLDLTDTSIKDAGTRSLRKCTALTFLSLQDCRFLTDIQFVEPLRNLLNLNLEGTE 486
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
V A + L L L+L C L+D C ++ +LK L+L +TDE + +
Sbjct: 487 VVDANIIPLMHCTKLEVLSLRHCLFLTDVRC--LRELKALKSLDLSGTYVTDEGVSDVSQ 544
Query: 275 LTNLESLNLDSCGI--GDEGLVNLTGLTNL--ESINL----------SFTGISDGSLRKL 320
+LE ++L C + E L LT L ++ + +N+ S G+S ++L
Sbjct: 545 CISLERIDLSECCLITHFEFLRPLTALRHVIADRMNVLDVTGLGGSGSVEGVSIADCKRL 604
Query: 321 AGLSSLKS-----LNLDARQITDTGL-AALTSLTGLTHLDLFG-ARITDSGAAYLRNFKN 373
+ L++ L+L ITD+G+ + L L L+L IT+ A + +
Sbjct: 605 GSMGLLEAPRLLDLSLKKSAITDSGIHSVLLRCHSLRRLNLQNCTSITELSA--VAQLPS 662
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L L + +T+ V + ++L L + + +TD + + L LV L++S + +
Sbjct: 663 LTELLVRNMKITNKSVAFVARCATLEKLQMVECVEITD--VNSLKYLHRLVELDLSRTSV 720
Query: 434 TSAGLRHLKPLKNLRSLTLESCK 456
TS G+ L NL+ L L C+
Sbjct: 721 TSGGIVGLARCYNLKKLNLSGCR 743
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 31/225 (13%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DLSG+ VTD G+ + C +L+ +D + C I+ E LR L+ L + R N
Sbjct: 523 ALKSLDLSGTYVTDEGVSDVSQCISLERIDLSECCLITH--FEFLRPLTALRHVIADRMN 580
Query: 118 AITAQGMKAFAGLINLVKLDLERC-----------------------TRIHGGLVNLKGL 154
+ G+ + + D +R + IH L+ L
Sbjct: 581 VLDVTGLGGSGSVEGVSIADCKRLGSMGLLEAPRLLDLSLKKSAITDSGIHSVLLRCHSL 640
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ LN++ NC + +++ ++ L +L L + K+T+ +A++ L L + C
Sbjct: 641 RR---LNLQ--NCTSITELSAVAQLPSLTELLVRNMKITNKSVAFVARCATLEKLQMVEC 695
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
V ++SL L L L+L+R ++ G ++ +LK LNL
Sbjct: 696 -VEITDVNSLKYLHRLVELDLSRTSVTSGGIVGLARCYNLKKLNL 739
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 176/405 (43%), Gaps = 53/405 (13%)
Query: 69 VTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS---LSFRRNNAITAQGM 124
V ++H + C L++L C S+ L RG++++ S R + G+
Sbjct: 130 VVGCDMMHVMSTCRELRALTVQNCFSESEVIL---RGVTSILSNRITEKREFSTFYISGV 186
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L NL L L ++ L + LE + + C + ++ LS L L
Sbjct: 187 TNLGVLSNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGL--RSLECLSSLQRLTE 244
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF---YLNLNRCQLS 241
L + +T+ G+A++ L + L+ C L ++ LGSL L+++R ++S
Sbjct: 245 LSLLNMGITEEGLAFISRCNSLRHIQLDNCMK----LQGINCLGSLIGLRTLSVSRNRVS 300
Query: 242 DDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLT 300
DDG S + +L+ L L FN ++ + + L L L+L + DEG L
Sbjct: 301 DDGIRSLSNLRNLEQLRLVSFNRLSS--VEPVLCLDKLLELDLTENWVTDEGCAALANCG 358
Query: 301 NLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
++ + L S +SD +R + L+SL+ L+L + L LT L L +
Sbjct: 359 QIQKLKLASCRCVSD--VRWICALTSLRFLDLSKTHVRSADLQLLTMCQRLEELHVASCS 416
Query: 360 -ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELI 417
+ D A+++ +L L++ + DAG + ++ ++LT L+L Q+C LTD
Sbjct: 417 GVKD--ASFVEGLLSLGHLDLTDTSIKDAGTRSLRKCTALTFLSL-QDCRFLTD------ 467
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
++ ++PL+NL +L LE +V +I
Sbjct: 468 --------------------IQFVEPLRNLLNLNLEGTEVVDANI 492
>gi|47091555|ref|ZP_00229352.1| internalin [Listeria monocytogenes str. 4b H7858]
gi|254932714|ref|ZP_05266073.1| internalin [Listeria monocytogenes HPB2262]
gi|405748772|ref|YP_006672238.1| internalin F [Listeria monocytogenes ATCC 19117]
gi|417314456|ref|ZP_12101155.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes J1816]
gi|424822145|ref|ZP_18247158.1| Internalin [Listeria monocytogenes str. Scott A]
gi|47020232|gb|EAL10968.1| internalin [Listeria monocytogenes str. 4b H7858]
gi|293584270|gb|EFF96302.1| internalin [Listeria monocytogenes HPB2262]
gi|328467702|gb|EGF38754.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes J1816]
gi|332310825|gb|EGJ23920.1| Internalin [Listeria monocytogenes str. Scott A]
gi|404217972|emb|CBY69336.1| internalin F (LPXTG motif) [Listeria monocytogenes ATCC 19117]
Length = 823
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 160/350 (45%), Gaps = 65/350 (18%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK--- 255
+ LQ LT NL L++D S + +L
Sbjct: 136 -ISALQNLT--------------------------NLRELYLNEDNISDISPLANLTKMY 168
Query: 256 VLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
LNLG N ++D L L +T L L + + D + + LT+L S++L++ I D
Sbjct: 169 SLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED 224
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+ LA L+SL QITD + + ++T L L + +ITD L N L
Sbjct: 225 --ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQL 278
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
LEI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++
Sbjct: 279 TWLEIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLG 333
Query: 435 SAGLRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 334 NEDMEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ +T +K + NL
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVTPIANLT 210
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 211 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
TD L L+ L L +L + Q+SD K +
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
LK+LN+G N+I+D + L L+ L SL L++ +G+E + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S++ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKV-----KDVTPIANLTDL 212
>gi|452824610|gb|EME31612.1| F-box and leucine-rich repeat protein GRR1 [Galdieria sulphuraria]
Length = 740
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 145/283 (51%), Gaps = 23/283 (8%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL +DLSG S +++ G+ L +L++L + C + + L ++R + L SLS
Sbjct: 121 SLKLLDLSGCSQLSNVGMEALSYFRSLETLVLDHCSSLGNISLSYIRDIPCLKSLSIACC 180
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ I+ G++ L L L+L C+RI L+++ L L+ L ++ C + + ++
Sbjct: 181 DKISGSGLEQLFYLKRLEFLNLSSCSRITSDALLHIGSLKNLKHLKLRNCARVDNRALEH 240
Query: 176 LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY-- 232
+ LT+L++L++ C K+ D+G+ YL+ ++ L L G ++A D +++L +F
Sbjct: 241 IGNLTSLETLELYECVKIDDNGLKYLQKCSQIRHLCLSGTCISA---DGIASLADIFMPH 297
Query: 233 ---LNLNRC------QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK-GLTNLESL 281
L+L RC Q S K SK ++K L L + + + DE L + LESL
Sbjct: 298 LENLHLTRCSNLVGSQFS-VSLRKLSK--NMKRLQLRYLHCVDDEVLQAISDSFPQLESL 354
Query: 282 NLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
NL C + D G+ L L++L + L T +SD + ++ L
Sbjct: 355 NLTDCRYVTDRGISWLEKLSSLSMLKLGGTSVSDYGILRIKDL 397
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 173/405 (42%), Gaps = 45/405 (11%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
L +++D L+SL C +IS GLE L L L L+ + IT+ + L N
Sbjct: 162 SLSYIRDIPCLKSLSIACCDKISGSGLEQLFYLKRLEFLNLSSCSRITSDALLHIGSLKN 221
Query: 133 LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L L L C R+ + L ++ L LE+L + C I D+ +K L + ++ L +S +
Sbjct: 222 LKHLKLRNCARVDNRALEHIGNLTSLETLELYECVKIDDNGLKYLQKCSQIRHLCLSGTC 281
Query: 192 VTDSGIA-----YLKGLQKLTLL---NLEGCPVTAA-----------------CLDS--L 224
++ GIA ++ L+ L L NL G + + C+D L
Sbjct: 282 ISADGIASLADIFMPHLENLHLTRCSNLVGSQFSVSLRKLSKNMKRLQLRYLHCVDDEVL 341
Query: 225 SALGSLFY----LNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNL 278
A+ F LNL C+ ++D G K+ SL +L LG ++D ++ +K L +
Sbjct: 342 QAISDSFPQLESLNLTDCRYVTDRGISWLEKLSSLSMLKLGGTSVSDYGILRIKDLLKRI 401
Query: 279 ESLNLDSCGIGDEGLVN--LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L++ SC + E + + L + +L+ +++S + L+ + LK L L I
Sbjct: 402 SELDISSCILCSEKITSHILNNVEHLKVLDISNNPQLTKNSWSLSYQNFLKRLPLKTLVI 461
Query: 337 TDTGLAALTSLTG-------LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+ G LT L L L RI +F LR L++ ++
Sbjct: 462 EEGGTLGKDFLTSVACLFPKLETLLLSKCRIDGDDFKAFTDFGCLRHLKLSHCEVSKPFK 521
Query: 390 KH--IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
I ++L LNLS +TD +I L L SLN+ N R
Sbjct: 522 FDFLISLKNALQHLNLSSCHFVTDDLCTIIGELINLESLNLKNCR 566
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 140/333 (42%), Gaps = 97/333 (29%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
V + L H+ + ++L++L+ C++I D GL++L+ S + L I+A G+ + A
Sbjct: 233 VDNRALEHIGNLTSLETLELYECVKIDDNGLKYLQKCSQIRHLCLS-GTCISADGIASLA 291
Query: 129 GLI--NLVKLDLERCTRIHGGL--VNLKGLMK---------------------------L 157
+ +L L L RC+ + G V+L+ L K L
Sbjct: 292 DIFMPHLENLHLTRCSNLVGSQFSVSLRKLSKNMKRLQLRYLHCVDDEVLQAISDSFPQL 351
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGC-- 214
ESLN+ C +TD + L L++L L++ + V+D GI +K L++++ L++ C
Sbjct: 352 ESLNLTDCRYVTDRGISWLEKLSSLSMLKLGGTSVSDYGILRIKDLLKRISELDISSCIL 411
Query: 215 ---PVTAACLDSLSAL---------------GSLFYLN---------------------- 234
+T+ L+++ L SL Y N
Sbjct: 412 CSEKITSHILNNVEHLKVLDISNNPQLTKNSWSLSYQNFLKRLPLKTLVIEEGGTLGKDF 471
Query: 235 ---------------LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD----ECLVHLKGL 275
L++C++ D + F+ G L+ L L E++ + L+ LK
Sbjct: 472 LTSVACLFPKLETLLLSKCRIDGDDFKAFTDFGCLRHLKLSHCEVSKPFKFDFLISLKN- 530
Query: 276 TNLESLNLDSCGIGDEGLVNLTG-LTNLESINL 307
L+ LNL SC + L + G L NLES+NL
Sbjct: 531 -ALQHLNLSSCHFVTDDLCTIIGELINLESLNL 562
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 45/227 (19%)
Query: 278 LESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDA-R 334
LE+L L C + DEGL LT S L K + L+ SLK L+L
Sbjct: 86 LEALVLSFCVHLTDEGLYKLTS--------------SQEDLHKDSPLTCSLKLLDLSGCS 131
Query: 335 QITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHI 392
Q+++ G+ AL+ L L L + + + +Y+R+ L+SL I C ++ +G++ +
Sbjct: 132 QLSNVGMEALSYFRSLETLVLDHCSSLGNISLSYIRDIPCLKSLSIACCDKISGSGLEQL 191
Query: 393 KDLSSLTLLNLS------------------------QNCNLTD-KTLELISGLTGLVSLN 427
L L LNLS +NC D + LE I LT L +L
Sbjct: 192 FYLKRLEFLNLSSCSRITSDALLHIGSLKNLKHLKLRNCARVDNRALEHIGNLTSLETLE 251
Query: 428 VSNS-RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+ +I GL++L+ +R L L ++A+ I L +P+L
Sbjct: 252 LYECVKIDDNGLKYLQKCSQIRHLCLSGTCISADGIASLADIFMPHL 298
>gi|440794154|gb|ELR15325.1| leucine rich repeat domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 598
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 108/421 (25%), Positives = 185/421 (43%), Gaps = 47/421 (11%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG-VNDKWMDVIASQGSSLL 60
LP ++ QI N L + LT + F + +L L L + G + D ++ +A + +
Sbjct: 49 LPDHLALQILNALALRKKLTLSNFVMFLNSSLVQLDLHECGGYITDHFIRQVAKRAQRIR 108
Query: 61 SVDLSGS-DVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
++L+ +T+ ++ L + LQS+D C ++ D LE + + +TSL R A
Sbjct: 109 RLNLATCFKITNPAVLDLARRLRCLQSVDLTGCNKLQDSALEAIAENTGITSL---RLGA 165
Query: 119 ITAQG----MKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSD 172
+T G ++ A L L +LDL C RI +L++L++ C ++D+
Sbjct: 166 VTKLGDSALLRVAARLAGLEELDLTHCPRITDRSATQLFDRCPQLKTLSLGGCWEVSDTS 225
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCP--VTAACLDSLSALGS 229
+ NL+ L ++ S + ++G+ +KG +KL LNLEGC A LD
Sbjct: 226 FSRIKLQVNLEHLDVAVSFIGNAGLQAIKGTCKKLKYLNLEGCANITDEAFLDDTPFGEH 285
Query: 230 LFYLNLNRC-QLSDDGC-----EKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLN 282
L LNL C ++ G ++ S SL+ L+L +TD + + L ++ SLN
Sbjct: 286 LETLNLAGCSNITARGIIGLFLDQISAPESLRTLHLP-QTLTDGAFIFITNQLRHVVSLN 344
Query: 283 LDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG---------------LSSLK 327
++SC E L L+ + + + K++ + LK
Sbjct: 345 IESCTELTEKAFKSYPLIALDEVRATPRRQRAADINKMSEDIDSGEIPGDLCFPLMPRLK 404
Query: 328 SLNLDA-RQITDTGLAALTSL-------TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLE 378
LN ++D LA L + L L L G R++D G +LR NLR L+
Sbjct: 405 KLNCKGCESLSDVALACLAGVGDEEKHEVALEELILEGCERVSDDGLHHLRQCANLRVLD 464
Query: 379 I 379
+
Sbjct: 465 L 465
>gi|87308228|ref|ZP_01090370.1| hypothetical protein DSM3645_21562 [Blastopirellula marina DSM
3645]
gi|87289310|gb|EAQ81202.1| hypothetical protein DSM3645_21562 [Blastopirellula marina DSM
3645]
Length = 438
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 142/323 (43%), Gaps = 13/323 (4%)
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI---HGGLVNLK 152
D G+ + LS L +L + A + +F GL L KL+ T + + L+
Sbjct: 104 DKGIRVVTTLSPLKALLIAKTKASS----DSFFGLEELRKLEQVEFTDLVINQAVIGGLR 159
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L NI+ + S LK+L I K + I + + L L L
Sbjct: 160 GLPNLNQFNIRNSELALPWALDERS-FPQLKTLLIDGGKADAALIGEVCSIPTLQQLQL- 217
Query: 213 GCPVTAACLDS---LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
CPV ++ L+ L +L L+L R L D+ C ++ ++ LN+G I ++ L
Sbjct: 218 SCPVGQFTINDFRRLADLPNLVDLSLVRSSLPDESCPLATQQLKIQKLNVGQTGIGNQFL 277
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+ NL L+L I D GL L+ L+ LES+ LS T IS + + + L SL+ L
Sbjct: 278 STIGDFPNLRELDLTGSKITDGGLAYLSELSQLESLTLSETNISSAAAKHFSQLQSLREL 337
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+L ++ + + L L +DL + + LR LR + + + A +
Sbjct: 338 HLHNTKLDGQAMVDIAKLKNLEWIDLSKSNVQGEQLLELRKLPKLRGVVLMNTPIGAADL 397
Query: 390 KHIKDLSSLTLLNLSQNCNLTDK 412
++K L + + + + NLT++
Sbjct: 398 PYLKQLYHIDEIYV-EETNLTNE 419
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 148/337 (43%), Gaps = 32/337 (9%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D ++ ++ L+ LK+L I+ +K + L+ L+KL + + A + L L +
Sbjct: 104 DKGIRVVTTLSPLKALLIAKTKASSDSFFGLEELRKLEQVEFTDLVINQAVIGGLRGLPN 163
Query: 230 LFYLNLNRCQLS------------------DDGCEKFSKIG------SLKVLNLG--FNE 263
L N+ +L+ D G + IG +L+ L L +
Sbjct: 164 LNQFNIRNSELALPWALDERSFPQLKTLLIDGGKADAALIGEVCSIPTLQQLQLSCPVGQ 223
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
T L L NL L+L + DE T ++ +N+ TGI + L +
Sbjct: 224 FTINDFRRLADLPNLVDLSLVRSSLPDESCPLATQQLKIQKLNVGQTGIGNQFLSTIGDF 283
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
+L+ L+L +ITD GLA L+ L+ L L L I+ + A + ++LR L +
Sbjct: 284 PNLRELDLTGSKITDGGLAYLSELSQLESLTLSETNISSAAAKHFSQLQSLRELHLHNTK 343
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL--ISGLTGLVSLNVSNSRITSAGLRHL 441
L + I L +L ++LS++ ++ LEL + L G+V + N+ I +A L +L
Sbjct: 344 LDGQAMVDIAKLKNLEWIDLSKSNVQGEQLLELRKLPKLRGVV---LMNTPIGAADLPYL 400
Query: 442 KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478
K L ++ + +E +T + +L L ++RP
Sbjct: 401 KQLYHIDEIYVEETNLTNEEQIKLHEA-LAKARNYRP 436
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 1/202 (0%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T + A L NLV L L R + +K++ LN+ I + + +
Sbjct: 224 FTINDFRRLADLPNLVDLSLVRSSLPDESCPLATQQLKIQKLNVGQTG-IGNQFLSTIGD 282
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
NL+ L ++ SK+TD G+AYL L +L L L +++A S L SL L+L+
Sbjct: 283 FPNLRELDLTGSKITDGGLAYLSELSQLESLTLSETNISSAAAKHFSQLQSLRELHLHNT 342
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+L +K+ +L+ ++L + + E L+ L+ L L + L + IG L L
Sbjct: 343 KLDGQAMVDIAKLKNLEWIDLSKSNVQGEQLLELRKLPKLRGVVLMNTPIGAADLPYLKQ 402
Query: 299 LTNLESINLSFTGISDGSLRKL 320
L +++ I + T +++ KL
Sbjct: 403 LYHIDEIYVEETNLTNEEQIKL 424
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 5/169 (2%)
Query: 27 AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL 86
A + +Q L +GQ G+ ++++ I +L +DL+GS +TD GL +L + S L+SL
Sbjct: 256 ATQQLKIQKLNVGQT-GIGNQFLSTIGD-FPNLRELDLTGSKITDGGLAYLSELSQLESL 313
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
+ IS +H L +L L N + Q M A L NL +DL +
Sbjct: 314 TLSET-NISSAAAKHFSQLQSLRELHL-HNTKLDGQAMVDIAKLKNLEWIDLSKSNVQGE 371
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L+ L+ L KL + + I +D+ L L ++ + + + +T+
Sbjct: 372 QLLELRKLPKLRGV-VLMNTPIGAADLPYLKQLYHIDEIYVEETNLTNE 419
>gi|430746594|ref|YP_007205723.1| hypothetical protein Sinac_5912 [Singulisphaera acidiphila DSM
18658]
gi|430018314|gb|AGA30028.1| hypothetical protein Sinac_5912 [Singulisphaera acidiphila DSM
18658]
Length = 170
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 28/167 (16%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L+ L +++ +GD G+ L + ++L T I+D L+ L G+ SL L+L A IT
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D GLA L + L LDL +I+D AG++H+K L
Sbjct: 83 DAGLAHLAGMDRLERLDLGYTKISD------------------------AGIEHLKGLKG 118
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
L ++ N+TD+++ +I G L ++N S+IT AG L+ +
Sbjct: 119 LDIV----ETNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM 161
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK L I ++V D+G+A L + L+L G +T A L L + SL +L+L ++
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN 301
D G + + L+ L+LG+ +I+D + HLKG L+ L++ + D + + G
Sbjct: 83 DAGLAHLAGMDRLERLDLGYTKISDAGIEHLKG---LKGLDIVETNVTDRSIPIIGGFER 139
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
LE+IN + I++ +L + L L++D
Sbjct: 140 LEAINPRGSKITEAGEEQLRKM--LPKLDID 168
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 3/142 (2%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
LK L + + D + L + L+L I D GL L G+ +L ++L TGI+
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
D L LAG+ L+ L+L +I+D G+ L L G LD+ +TD + F+
Sbjct: 83 DAGLAHLAGMDRLERLDLGYTKISDAGIEHLKGLKG---LDIVETNVTDRSIPIIGGFER 139
Query: 374 LRSLEICGGGLTDAGVKHIKDL 395
L ++ G +T+AG + ++ +
Sbjct: 140 LEAINPRGSKITEAGEEQLRKM 161
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 25/122 (20%)
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
LK L ++ ++ D G+A L S G+ LDL G +ITD+G L+ K+L L + G+T
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
DAG+ H+ +G+ L L++ ++I+ AG+ HLK LK
Sbjct: 83 DAGLAHL-------------------------AGMDRLERLDLGYTKISDAGIEHLKGLK 117
Query: 446 NL 447
L
Sbjct: 118 GL 119
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ D+ M L+ + L + +K+TD+G+ LKG++ L L+L +T A L L+ +
Sbjct: 33 VGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGITDAGLAHLAGM 92
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L+L ++SD G E LK L++ +TD + + G LE++N
Sbjct: 93 DRLERLDLGYTKISDAGIEHLK---GLKGLDIVETNVTDRSIPIIGGFERLEAINPRGSK 149
Query: 288 IGDEG 292
I + G
Sbjct: 150 ITEAG 154
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 77 LKDCSNLQSLDFNFCI---------QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
L+ C N + + + ++ D G+ L + L IT G+K
Sbjct: 7 LQGCPNANGIRLSAVVLKRLAIENTRVGDAGMAQLASHPGIAELDLH-GTKITDAGLKPL 65
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
G+ +LV L L GL +L G+ +LE L++ + I+D+ ++ L G LK L I
Sbjct: 66 KGMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTK-ISDAGIEHLKG---LKGLDI 121
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ VTD I + G ++L +N G +T A + L +
Sbjct: 122 VETNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM 161
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N + GM A + +LDL GL LKG+ L L+++ ITD+ +
Sbjct: 30 NTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLR-ATGITDAGLAH 88
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+G+ L+ L + +K++D+GI +LKGL+ L ++ VT + + L +N
Sbjct: 89 LAGMDRLERLDLGYTKISDAGIEHLKGLKGLDIVETN---VTDRSIPIIGGFERLEAINP 145
Query: 236 NRCQLSDDGCEKFSKI 251
++++ G E+ K+
Sbjct: 146 RGSKITEAGEEQLRKM 161
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL-------SNLTS 110
SL+ + L + +TD+GL HL L+ LD + +ISD G+EHL+GL +N+T
Sbjct: 70 SLVHLSLRATGITDAGLAHLAGMDRLERLDLGYT-KISDAGIEHLKGLKGLDIVETNVTD 128
Query: 111 LS------FRRNNAITAQGMK 125
S F R AI +G K
Sbjct: 129 RSIPIIGGFERLEAINPRGSK 149
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 31/158 (19%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
V D M +AS + +DL G+ +TD+ GL+ L+
Sbjct: 33 VGDAGMAQLASH-PGIAELDLHGTKITDA-------------------------GLKPLK 66
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+ +L LS R IT G+ AG+ L +LDL G+ +LKG L+ L+I
Sbjct: 67 GMKSLVHLSL-RATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLKG---LKGLDIV 122
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
N +TD + + G L+++ SK+T++G L+
Sbjct: 123 ETN-VTDRSIPIIGGFERLEAINPRGSKITEAGEEQLR 159
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 25/117 (21%)
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
L L + R+ D+G A L + + L++ G +TDAG+K +K
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLK---------------- 66
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
G+ LV L++ + IT AGL HL + L L L K++ I+ L+
Sbjct: 67 ---------GMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLK 114
>gi|219821324|gb|ACL37794.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 174/369 (47%), Gaps = 71/369 (19%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
D + L KLT NLE T + ++ LG +L L+LN QL D G
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT----- 210
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
L LTNL SL++ + I + L L+GLT L + L +
Sbjct: 211 ---------------------LASLTNLTSLDVANNQISN--LAPLSGLTKLTELELGYN 247
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
IS+ + +AGL++L SL L Q+ D ++ +++L LT+L L+ I+D + + +
Sbjct: 248 QISN--ISPIAGLTALTSLELHENQLED--ISPISNLKNLTYLALYFNNISD--ISPVSS 301
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L+ L ++D V + +L+++ L+ + N IS LT L +L
Sbjct: 302 LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAAHNQ---------ISDLTPLANL---- 346
Query: 431 SRITSAGLR 439
+RI+ GL
Sbjct: 347 TRISELGLN 355
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 35/234 (14%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+N Q++D + + +L L L N+ITD + LK LTNL L L S I D +
Sbjct: 69 MNNNQITD--ISPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--IS 122
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 123 ALSGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 177
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+++ N L
Sbjct: 178 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTSLDVANNQ---ISNL 230
Query: 415 ELISGLTGLVSLNVSNSRITS----AG-------------LRHLKPLKNLRSLT 451
+SGLT L L + ++I++ AG L + P+ NL++LT
Sbjct: 231 APLSGLTKLTELELGYNQISNISPIAGLTALTSLELHENQLEDISPISNLKNLT 284
>gi|290796119|gb|ADD64789.1| CLAVATA1 [Brassica napus]
Length = 987
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 6/239 (2%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP---LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+K L L+ LNI N + + P L+ + +L+ L + T + GL+KL
Sbjct: 121 MKSLTSLKVLNI--SNNVNLNGTFPGEILTPMVDLEVLDAYNNNFTGPLPPEIPGLKKLR 178
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITD 266
L+L G +T +S + SL YL LN LS + S++ +LK + +G FN T
Sbjct: 179 HLSLGGNFLTGEIPESYGDIQSLEYLGLNGAGLSGESPAFLSRLKNLKEMYVGYFNSYTG 238
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
LTNLE L++ SC + E L+ L +L ++ L ++ +L+GL SL
Sbjct: 239 GVPPEFGELTNLEVLDMASCTLTGEIPTTLSNLKHLHTLFLHINNLTGNIPPELSGLISL 298
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
KSL+L Q+T + SL +T ++LF + ++ + NL+ L++ T
Sbjct: 299 KSLDLSINQLTGEIPQSFISLWNITLVNLFRNNLHGPIPEFIGDMPNLQVLQVWENNFT 357
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 156/367 (42%), Gaps = 27/367 (7%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNLKGLMKLESLN 161
L NL + N+ T F L NL LD+ CT I L NLK L L L+
Sbjct: 222 LKNLKEMYVGYFNSYTGGVPPEFGELTNLEVLDMASCTLTGEIPTTLSNLKHLHTL-FLH 280
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
I N +T + LSGL +LKSL +S +++T L +TL+NL +
Sbjct: 281 I---NNLTGNIPPELSGLISLKSLDLSINQLTGEIPQSFISLWNITLVNLFRNNLHGPIP 337
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ + + +L L + + + + G+LK L++ N +T + L LE+L
Sbjct: 338 EFIGDMPNLQVLQVWENNFTLELPANLGRNGNLKKLDVSDNHLTGLIPMDLCRGGKLETL 397
Query: 282 NL-DSCGIG--DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L D+ G E L L + + G AGL +L + + ++TD
Sbjct: 398 VLSDNFFFGSIPEKLGRCKSLNKIRIVKNLLNGTVP------AGLFTLPLVTI--IELTD 449
Query: 339 TGLAALTSLTG------LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+ L G L H+ L T + NFKNL+ L + + + +
Sbjct: 450 NFFSG--ELPGEMSGDLLDHIYLSNNWFTGLIPPAIGNFKNLQDLFLDRNRFSGNIPREV 507
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+L LT +N S N NLT + IS T L+S+++S +RI + + + NL +L L
Sbjct: 508 FELKHLTKINTSAN-NLTGDIPDSISRCTSLISVDLSRNRIGGDIPKDIHDVINLGTLNL 566
Query: 453 ESCKVTA 459
++T
Sbjct: 567 SGNQLTG 573
>gi|417316691|ref|ZP_12103332.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes J1-220]
gi|328476023|gb|EGF46741.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes J1-220]
Length = 830
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 160/350 (45%), Gaps = 65/350 (18%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK--- 255
+ LQ LT NL L++D S + +L
Sbjct: 136 -ISALQNLT--------------------------NLRELYLNEDNISDISPLANLTKMY 168
Query: 256 VLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
LNLG N ++D L L +T L L + + D + + LT+L S++L++ I D
Sbjct: 169 SLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED 224
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+ LA L+SL QITD + + ++T L L + +ITD L N L
Sbjct: 225 --ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQL 278
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
LEI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++
Sbjct: 279 TWLEIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLG 333
Query: 435 SAGLRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 334 NEDMEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ +T +K + NL
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVTPIANLT 210
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 211 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
TD L L+ L L +L + Q+SD K +
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
LK+LN+G N+I+D + L L+ L SL L++ +G+E + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S++ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKV-----KDVTPIANLTDL 212
>gi|320165160|gb|EFW42059.1| hypothetical protein CAOG_07191 [Capsaspora owczarzaki ATCC 30864]
Length = 805
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 116/265 (43%), Gaps = 10/265 (3%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRI--HGGL 148
QI+ L GL++LT L RNN I++ AF GL + + LD + T I H
Sbjct: 68 QITSISATALTGLTSLTQLLLPRNN-ISSIAANAFTGLSALTYISLDSNKLTSIPTHA-- 124
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
GL L+ L + N +T +GLT L SL + +++T L LT
Sbjct: 125 --FTGLTALQHL-LMQNNPVTSIPADAFAGLTALNSLVLFNNQITSISTNAFASLNALTT 181
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L+ + + D+ + L +L L ++ Q++ F+ + +L L+L N+IT
Sbjct: 182 LQLQQNLIDSIPADAFAGLTALTNLRMDNNQITTIPAGAFAGLTALNYLHLSNNQITSIS 241
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
GLT L L L S I T LT L + L I+ GL++L+
Sbjct: 242 ATAFTGLTALSGLQLHSNYITSIPASAFTSLTALIQLKLGTNQITSIPSNAFTGLTALQD 301
Query: 329 LNLDARQITDTGLAALTSLTGLTHL 353
L L + QIT A LTGL L
Sbjct: 302 LELHSNQITSLSTDAFQGLTGLVKL 326
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 137/344 (39%), Gaps = 34/344 (9%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E G+ T++ +NN IT+ A GL +L +L L R
Sbjct: 50 EMPTGVPATTTVLNLQNNQITSISATALTGLTSLTQLLLPR------------------- 90
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
N I+ +GL+ L + + +K+T GL L L ++ PVT+
Sbjct: 91 ------NNISSIAANAFTGLSALTYISLDSNKLTSIPTHAFTGLTALQHLLMQNNPVTSI 144
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
D+ + L +L L L Q++ F+ + +L L L N I GLT L
Sbjct: 145 PADAFAGLTALNSLVLFNNQITSISTNAFASLNALTTLQLQQNLIDSIPADAFAGLTALT 204
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+L +D+ I GLT L ++LS I+ S GL++L L L + IT
Sbjct: 205 NLRMDNNQITTIPAGAFAGLTALNYLHLSNNQITSISATAFTGLTALSGLQLHSNYITSI 264
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
+A TSLT L L L +IT + L+ LE+ +T + L+ L
Sbjct: 265 PASAFTSLTALIQLKLGTNQITSIPSNAFTGLTALQDLELHSNQITSLSTDAFQGLTGLV 324
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
L L+ N LT L GL SN+ + + +L P
Sbjct: 325 KLLLNSN-PLTTLPPGLFQGL--------SNNLVIAESYSYLSP 359
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 112/276 (40%), Gaps = 25/276 (9%)
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T+LNL+ +T+ +L+ L SL L L R +S F+ + +L ++L N++T
Sbjct: 60 TVLNLQNNQITSISATALTGLTSLTQLLLPRNNISSIAANAFTGLSALTYISLDSNKLTS 119
Query: 267 ECLVHLKGLTNLESL---NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL--- 320
GLT L+ L N I + LT L +L N T IS + L
Sbjct: 120 IPTHAFTGLTALQHLLMQNNPVTSIPADAFAGLTALNSLVLFNNQITSISTNAFASLNAL 179
Query: 321 ------------------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
AGL++L +L +D QIT A LT L +L L +IT
Sbjct: 180 TTLQLQQNLIDSIPADAFAGLTALTNLRMDNNQITTIPAGAFAGLTALNYLHLSNNQITS 239
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
A L L++ +T L++L L L N +T +GLT
Sbjct: 240 ISATAFTGLTALSGLQLHSNYITSIPASAFTSLTALIQLKLGTN-QITSIPSNAFTGLTA 298
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L L + +++ITS + L L L L S +T
Sbjct: 299 LQDLELHSNQITSLSTDAFQGLTGLVKLLLNSNPLT 334
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 1/208 (0%)
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
+ VLNL N+IT L GLT+L L L I TGL+ L I+L
Sbjct: 57 ATTTVLNLQNNQITSISATALTGLTSLTQLLLPRNNISSIAANAFTGLSALTYISLDSNK 116
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
++ GL++L+ L + +T A LT L L LF +IT +
Sbjct: 117 LTSIPTHAFTGLTALQHLLMQNNPVTSIPADAFAGLTALNSLVLFNNQITSISTNAFASL 176
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
L +L++ + L++LT L + N +T +GLT L L++SN+
Sbjct: 177 NALTTLQLQQNLIDSIPADAFAGLTALTNLRMDNN-QITTIPAGAFAGLTALNYLHLSNN 235
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVTA 459
+ITS L L L L S +T+
Sbjct: 236 QITSISATAFTGLTALSGLQLHSNYITS 263
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 95/227 (41%), Gaps = 1/227 (0%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LNL Q++ + + SL L L N I+ GL+ L ++LDS +
Sbjct: 62 LNLQNNQITSISATALTGLTSLTQLLLPRNNISSIAANAFTGLSALTYISLDSNKLTSIP 121
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
TGLT L+ + + ++ AGL++L SL L QIT A SL LT
Sbjct: 122 THAFTGLTALQHLLMQNNPVTSIPADAFAGLTALNSLVLFNNQITSISTNAFASLNALTT 181
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L L I A L +L + +T L++L L+LS N +T
Sbjct: 182 LQLQQNLIDSIPADAFAGLTALTNLRMDNNQITTIPAGAFAGLTALNYLHLSNN-QITSI 240
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
+ +GLT L L + ++ ITS L L L L + ++T+
Sbjct: 241 SATAFTGLTALSGLQLHSNYITSIPASAFTSLTALIQLKLGTNQITS 287
>gi|422414916|ref|ZP_16491873.1| internalin A, partial [Listeria innocua FSL J1-023]
gi|313625062|gb|EFR94940.1| internalin A [Listeria innocua FSL J1-023]
Length = 676
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 166/349 (47%), Gaps = 52/349 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNN-QIAD--ISPLANLTNLTGLTLFTN 152
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+K L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 153 QITDIDPLK---NLTNLNRLELSGNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN-- 234
+ LT L+ L IS +KVTD + L KLT NLE T + ++ LG L L+
Sbjct: 204 ANLTTLERLDISSNKVTDISV-----LSKLT--NLERLIATNNQISDITPLGILINLDEL 256
Query: 235 -LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EG 292
LN QL D G + +L L+L N+I++ L L LT L L L + I +
Sbjct: 257 SLNGNQLKDIGT--LVSLTNLTNLDLANNQISN--LAPLTDLTKLTELKLGANQISNISP 312
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS---LNLDARQITDTGLAALTSLTG 349
L LT LTNLE + + L ++ +S+LK+ L L I+D ++ ++SLT
Sbjct: 313 LAGLTALTNLE--------LHENQLEDISPISNLKNLTYLTLYINNISD--ISPVSSLTK 362
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + +++D + L N N+ L AG I DL+ L
Sbjct: 363 LQRLFFYNNKVSDVSS--LANLTNINWLS--------AGNNQISDLTPL 401
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 91/207 (43%), Gaps = 51/207 (24%)
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318
LG +TD + L + +L D GI + + + L NL IN S ++D +
Sbjct: 61 LGKTNVTDT--ISQTDLDQVTTLQADRLGI--KSINGVEYLNNLTQINFSNNQLTD--IT 114
Query: 319 KLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
L L+ L + ++ QI D + LA LT+LTGLT LF +ITD L+N NL L
Sbjct: 115 PLKDLTKLVDIVMNNNQIADISPLANLTNLTGLT---LFTNQITDIDP--LKNLTNLNRL 169
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
E+ G ++D IS L+GL SL + S G
Sbjct: 170 ELSGNTISD------------------------------ISALSGLTSL-----QQLSFG 194
Query: 438 --LRHLKPLKNLRSLTLESCKVTANDI 462
+ LKPL NL TLE +++N +
Sbjct: 195 NQVTDLKPLANLT--TLERLDISSNKV 219
>gi|290976022|ref|XP_002670740.1| predicted protein [Naegleria gruberi]
gi|284084302|gb|EFC37996.1| predicted protein [Naegleria gruberi]
Length = 213
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 103/208 (49%), Gaps = 1/208 (0%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
L LN+G+NEI E + + L SL++ S IG EG ++ + L S+++ + I
Sbjct: 4 LTSLNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYNEIG 63
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
+ ++ ++ L SL++ + QI G ++ + LT LD+ I G+ Y+
Sbjct: 64 VEGSKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISEMNQ 123
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L SL+I + G K I ++ SLT L++ N + + + IS + L SL++ ++ I
Sbjct: 124 LTSLDIHSNQIGVEGAKFISEMKSLTSLDIHYN-EIGVEGSKYISEMKSLTSLDIYSNEI 182
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVTAND 461
G +++ + L SL + K+ +
Sbjct: 183 GVEGAKYISEMNQLTSLDMLPIKLVQKE 210
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 103/201 (51%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT LN+ + +S + L L++ ++ +G + S++ L L++ +N
Sbjct: 1 MKQLTSLNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYN 60
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG 322
EI E ++ + L SL++ S IG EG ++ + L S+++ + I + ++
Sbjct: 61 EIGVEGSKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISE 120
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
++ L SL++ + QI G ++ + LT LD+ I G+ Y+ K+L SL+I
Sbjct: 121 MNQLTSLDIHSNQIGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSN 180
Query: 383 GLTDAGVKHIKDLSSLTLLNL 403
+ G K+I +++ LT L++
Sbjct: 181 EIGVEGAKYISEMNQLTSLDM 201
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 87/174 (50%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN+ ++ +G + S++ L L++ NEI E ++ + L SL++ IG EG
Sbjct: 7 LNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYNEIGVEG 66
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
++ + L S+++ I + ++ + L SL++ +I G ++ + LT
Sbjct: 67 SKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISEMNQLTS 126
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LD+ +I GA ++ K+L SL+I + G K+I ++ SLT L++ N
Sbjct: 127 LDIHSNQIGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSN 180
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 15/188 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ +++ G ++ + L SLD ++ +I G +++ ++ LTSL
Sbjct: 23 SEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYN-EIGVEGSKYISEMNQLTSLDI 81
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLESLNIKWCNC 167
+N I +G K + + L LD IH + ++G + +L SL+I N
Sbjct: 82 -HSNQIGVEGAKYISEMKQLTSLD------IHYNEIGVEGSKYISEMNQLTSLDI-HSNQ 133
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I K +S + +L SL I +++ G Y+ ++ LT L++ + +S +
Sbjct: 134 IGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSNEIGVEGAKYISEM 193
Query: 228 GSLFYLNL 235
L L++
Sbjct: 194 NQLTSLDM 201
>gi|421888173|ref|ZP_16319281.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum K60-1]
gi|378966462|emb|CCF96029.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum K60-1]
Length = 466
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 137/295 (46%), Gaps = 14/295 (4%)
Query: 168 ITDSDMKPLSGLTNLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+D+D++ L +L+ L +S +T +GIA L L L L++ GC + A L+
Sbjct: 138 FSDADLQRLP--PSLRELDLSQCTGPITAAGIARLLAL-PLDRLDVGGCRLNADSARLLA 194
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L L++ R + D G F++ L LN N I + L T + +L++
Sbjct: 195 GHPTLTALDIRRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISD 254
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
IGDEG L G T L ++ S +GI R LA +L SL+L +I G AL
Sbjct: 255 NEIGDEGARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALG 314
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
T LT L + G + AA L L +L++ + AG + ++LT LNLS
Sbjct: 315 ENTTLTTLHVCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSN 374
Query: 406 NCNLTDKTLELISGL---TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
N +E +S + L L++SN+RI A + L + L +L S ++
Sbjct: 375 NG------IERVSAWANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSNRI 423
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 114/271 (42%), Gaps = 3/271 (1%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A + AG L LD+ R G+ KL +LN N I + ++ L+
Sbjct: 185 LNADSARLLAGHPTLTALDIRRNAIGDAGVAAFARNKKLTALNAS-SNGIGPAGVRALAA 243
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
T + +L IS +++ D G L G LT L+ + +L+ +L L+L+
Sbjct: 244 NTTIATLDISDNEIGDEGARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYN 303
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ +G E + +L L++ N + L L +L+L S IG G
Sbjct: 304 EIGAEGAEALGENTTLTTLHVCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGT 363
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
T L +NLS GI + A S L L++ +I D L LT L+
Sbjct: 364 NTTLTKLNLSNNGIE--RVSAWANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSN 421
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
RI D+GA+ L L +L + + +AG+
Sbjct: 422 RIGDAGASALAGNTTLATLNVSFNRIGEAGL 452
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 123/321 (38%), Gaps = 52/321 (16%)
Query: 57 SSLLSVDLSG--SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
SL +DLS +T +G+ L L LD C +D L G LT+L R
Sbjct: 148 PSLRELDLSQCTGPITAAGIARLLALP-LDRLDVGGCRLNADSA-RLLAGHPTLTALDIR 205
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
RN AI G+ AFA L L+ G+ L + +L+I N I D +
Sbjct: 206 RN-AIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDIS-DNEIGDEGAR 263
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL---------- 224
L+G T L L S S + G L L L+L + A ++L
Sbjct: 264 ALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALGENTTLTTLH 323
Query: 225 ---------------------------SALGSL----FYLN--LNRCQLSDDGCEKFSKI 251
+A+GS F N L + LS++G E+ S
Sbjct: 324 VCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSNNGIERVSAW 383
Query: 252 GS---LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
+ L L++ N I D L L +LN S IGD G L G T L ++N+S
Sbjct: 384 ANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSNRIGDAGASALAGNTTLATLNVS 443
Query: 309 FTGISDGSLRKLAGLSSLKSL 329
F I + L L ++LK L
Sbjct: 444 FNRIGEAGLLALEANTTLKKL 464
>gi|413936142|gb|AFW70693.1| F-box family member [Zea mays]
Length = 643
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 138/485 (28%), Positives = 213/485 (43%), Gaps = 100/485 (20%)
Query: 49 MDVIASQGSSLLSVDLSGSD----VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGL-EHL 102
M V+A L + + GS VTD GL + + NL SL I+D GL E
Sbjct: 154 MAVVAGSCGGLEKLSVRGSHPARGVTDQGLSAVARGSPNLSSLALWDVPLITDAGLVEIA 213
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
G L L R IT +G+ AFA G +LV L +E C+ + GL + + MKL++
Sbjct: 214 AGCPLLERLDISRCPLITDKGLAAFAQGCPDLVSLTIEACSSVGDEGLRAIGRSCMKLQA 273
Query: 160 LNIKWCNCITDSDMKPL--SGLTNLKSLQISCSKVTDSGIAYL----------------- 200
+NIK C + D + L S +L +++ +TD+ +A +
Sbjct: 274 VNIKNCPLVGDQGISSLVCSATASLAKIRLQGLNITDASLAVIGYYGKAITDLSLTRLAT 333
Query: 201 ------------KGLQKLTLLNLEGCP-VTAACLDSLSAL-GSLFYLNLNRC-QLSDDGC 245
GLQ L +++ CP VT L S++ SL L L +C +SD G
Sbjct: 334 VGERGFWVMANAAGLQNLRCMSVTSCPGVTDLALASIAKFCPSLKKLYLRKCGHVSDAGL 393
Query: 246 EKFSKIGSLKVL-NLGFNEITDECLVHLKGLTN----LESLNLDSCGIGDEGLVNLTGLT 300
+ F++ S KV NL E LV + N +L+L C +G + + ++ L
Sbjct: 394 KAFTE--SAKVFENLQLEECNRVTLVGILAFLNCSQKFRALSLVKC-MGIKDICSVPQLP 450
Query: 301 NLESINL----SFTGISDGSLRKLAGL-SSLKSLNLDA-RQITDTGLAAL--TSLTGLTH 352
S+ G ++ SL + + L+ ++L ++TD GL L +S +GL
Sbjct: 451 FCRSLRFLTIKDCPGFTNASLAVVGMICPQLEQVDLSGLGEVTDNGLLPLIQSSESGLIK 510
Query: 353 LDLFGAR-ITDSGAAYL--RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
+DL G + ITD + L R+ K+L+ SLE C +TDA +L +S++C
Sbjct: 511 VDLSGCKNITDVAVSSLVKRHGKSLKKVSLEGC-SKITDA-----------SLFTMSESC 558
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGL------RHLKPLKNLRSLTLESC-KVTAN 460
T L L++SN ++ G+ RHLK LR L+L C KVT
Sbjct: 559 -------------TELAELDLSNCMVSDYGVAMLASARHLK----LRVLSLSGCSKVTQK 601
Query: 461 DIKRL 465
+ L
Sbjct: 602 SVPFL 606
>gi|290981165|ref|XP_002673301.1| predicted protein [Naegleria gruberi]
gi|284086884|gb|EFC40557.1| predicted protein [Naegleria gruberi]
Length = 357
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 24/204 (11%)
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
++ L LN+G N+I DE H+ L L L++ I + GLVN +
Sbjct: 160 QLRQLTYLNIGNNDIGDEGAKHISQLKLLTFLDVYENRISNVGLVNFSN----------- 208
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
L L LN+++ I L + LTHL++ + + GA ++
Sbjct: 209 ------------ELQHLTHLNINSNYIFSDDAKLLIEMKQLTHLNIGDNSLQEEGAKWIS 256
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
K L+ L I + G+K+I +L++LT LN+SQN + DK +E + L L LN+S
Sbjct: 257 EMKQLKYLNISRNLIRSEGMKYICELTNLTTLNVSQNS-IKDKGIEKLPNLEKLTELNIS 315
Query: 430 NSRITSAGLRHLKPLKNLRSLTLE 453
+ I++ G + + LK L L ++
Sbjct: 316 YNNISNKGAKLINELKQLTFLDMD 339
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 1/178 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNR 237
L L L I + + D G ++ L+ LT L++ ++ L + S L L +LN+N
Sbjct: 161 LRQLTYLNIGNNDIGDEGAKHISQLKLLTFLDVYENRISNVGLVNFSNELQHLTHLNINS 220
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ D + ++ L LN+G N + +E + + L+ LN+ I EG+ +
Sbjct: 221 NYIFSDDAKLLIEMKQLTHLNIGDNSLQEEGAKWISEMKQLKYLNISRNLIRSEGMKYIC 280
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
LTNL ++N+S I D + KL L L LN+ I++ G + L LT LD+
Sbjct: 281 ELTNLTTLNVSQNSIKDKGIEKLPNLEKLTELNISYNNISNKGAKLINELKQLTFLDM 338
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 2/180 (1%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IAYLKGLQKLTLLNLE 212
L +L LNI N I D K +S L L L + +++++ G + + LQ LT LN+
Sbjct: 161 LRQLTYLNIG-NNDIGDEGAKHISQLKLLTFLDVYENRISNVGLVNFSNELQHLTHLNIN 219
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ + L + L +LN+ L ++G + S++ LK LN+ N I E + ++
Sbjct: 220 SNYIFSDDAKLLIEMKQLTHLNIGDNSLQEEGAKWISEMKQLKYLNISRNLIRSEGMKYI 279
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
LTNL +LN+ I D+G+ L L L +N+S+ IS+ + + L L L++D
Sbjct: 280 CELTNLTTLNVSQNSIKDKGIEKLPNLEKLTELNISYNNISNKGAKLINELKQLTFLDMD 339
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 3/184 (1%)
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLD 284
L L YLN+ + D+G + S++ L L++ N I++ LV+ L +L LN++
Sbjct: 160 QLRQLTYLNIGNNDIGDEGAKHISQLKLLTFLDVYENRISNVGLVNFSNELQHLTHLNIN 219
Query: 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
S I + L + L +N+ + + + ++ + LK LN+ I G+ +
Sbjct: 220 SNYIFSDDAKLLIEMKQLTHLNIGDNSLQEEGAKWISEMKQLKYLNISRNLIRSEGMKYI 279
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
LT LT L++ I D G L N + L L I +++ G K I +L LT L++
Sbjct: 280 CELTNLTTLNVSQNSIKDKGIEKLPNLEKLTELNISYNNISNKGAKLINELKQLTFLDM- 338
Query: 405 QNCN 408
+CN
Sbjct: 339 -DCN 341
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 2/176 (1%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMK 174
NN I +G K + L L LD+ + GLVN L L LNI N I D K
Sbjct: 171 NNDIGDEGAKHISQLKLLTFLDVYENRISNVGLVNFSNELQHLTHLNIN-SNYIFSDDAK 229
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L + L L I + + + G ++ +++L LN+ + + + + L +L LN
Sbjct: 230 LLIEMKQLTHLNIGDNSLQEEGAKWISEMKQLKYLNISRNLIRSEGMKYICELTNLTTLN 289
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
+++ + D G EK + L LN+ +N I+++ + L L L++D GD
Sbjct: 290 VSQNSIKDKGIEKLPNLEKLTELNISYNNISNKGAKLINELKQLTFLDMDCNEGGD 345
>gi|407410013|gb|EKF32614.1| hypothetical protein MOQ_003536 [Trypanosoma cruzi marinkellei]
Length = 835
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 182/405 (44%), Gaps = 47/405 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC----IQISDGGLEHLRGLSNLTSLS 112
S L S+ L + +++ +++L +C +L+ + N C L+ L+ LS L
Sbjct: 193 SKLRSLTLCNTPLSEVMMLYLSECVSLERVVMNSCRGLSSLECLSSLQRLKELSLL---- 248
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
N IT +G+ + +L + L+ C MKL+S+N
Sbjct: 249 ---NMGITEEGLAFISSCNSLQHIQLDNC-------------MKLQSINC---------- 282
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
L L L++L +S ++V+D GI L L+ L L L ++ ++ + L L
Sbjct: 283 ---LGSLLGLRTLSVSRNRVSDVGIQSLSNLKNLEQLRLVSFNRLSS-VEPVVCLDKLLE 338
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L +++D+GC + G ++ L L + + + LT+L L+L +
Sbjct: 339 LDLTENRVTDEGCAALANCGQIQKLTLASCRCVSD-VRWICALTSLRFLDLSKTHVRSAD 397
Query: 293 LVNLTGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
L LT LE +++ S +G+ D S + GL SLK L+L I D G +L T LT
Sbjct: 398 LQLLTVCQRLEELHVASCSGVKDVSF--VEGLLSLKHLDLTDTSIKDAGTQSLRKCTALT 455
Query: 352 HLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L L R +TD ++ NL SL + G + DA + + + L LL+L LT
Sbjct: 456 FLSLQDCRFLTD--IHFVEPLNNLLSLNLEGTEVVDANIIPLMHCTKLELLSLRHCLFLT 513
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
D + + L L SL++S + +T G+ + +L + L C
Sbjct: 514 D--VRCLRELKALKSLDLSGTYVTDEGISDVSQCISLERIDLSEC 556
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 111/443 (25%), Positives = 185/443 (41%), Gaps = 80/443 (18%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
LL +DL+ + VTD G L +C +Q L C +SD +R + LTSL F
Sbjct: 336 LLELDLTENRVTDEGCAALANCGQIQKLTLASCRCVSD-----VRWICALTSLRF----- 385
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
LDL + L L +LE L++ C+ + D + G
Sbjct: 386 -----------------LDLSKTHVRSADLQLLTVCQRLEELHVASCSGVKDVSF--VEG 426
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-----------------------EGCP 215
L +LK L ++ + + D+G L+ LT L+L EG
Sbjct: 427 LLSLKHLDLTDTSIKDAGTQSLRKCTALTFLSLQDCRFLTDIHFVEPLNNLLSLNLEGTE 486
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
V A + L L L+L C L+D C ++ +LK L+L +TDE + +
Sbjct: 487 VVDANIIPLMHCTKLELLSLRHCLFLTDVRC--LRELKALKSLDLSGTYVTDEGISDVSQ 544
Query: 275 LTNLESLNLDSCGI--GDEGLVNLTGLTNL--ESINL----------SFTGISDGSLRKL 320
+LE ++L C + E L LT L ++ + +N+ S G+S ++L
Sbjct: 545 CISLERIDLSECCLITHFEFLRPLTALKHVIADRMNVLDVTGLGGSGSVEGVSLADCKRL 604
Query: 321 AGLSSLKS-----LNLDARQITDTGL-AALTSLTGLTHLDLFG-ARITDSGAAYLRNFKN 373
+ L++ L+L ITD+G+ L L L+L IT+ A + +
Sbjct: 605 GSMCLLEAPRLLDLSLKKSTITDSGIHGVLLRCHSLRRLNLQNCTSITELSA--VAQLPS 662
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L L + + + V + ++L L + + ++TD + + L LV L++S + +
Sbjct: 663 LTELFVRNMKIKNKSVAFVARCATLEKLQMVECVDITD--VNSLKYLHRLVELDLSRTSV 720
Query: 434 TSAGLRHLKPLKNLRSLTLESCK 456
TS G+ L NL+ L L C+
Sbjct: 721 TSGGIVGLASCYNLKKLNLSGCR 743
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 117/275 (42%), Gaps = 54/275 (19%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DLSG+ VTD G+ + C +L+ +D + C I+ E LR L+ L + R N
Sbjct: 523 ALKSLDLSGTYVTDEGISDVSQCISLERIDLSECCLITH--FEFLRPLTALKHVIADRMN 580
Query: 118 AITAQGM--------------KAFAGLI-----NLVKLDLERCTR----IHGGLVNLKGL 154
+ G+ K + L+ L L++ T IHG L+ L
Sbjct: 581 VLDVTGLGGSGSVEGVSLADCKRLGSMCLLEAPRLLDLSLKKSTITDSGIHGVLLRCHSL 640
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ LN++ NC + +++ ++ L +L L + K+ + +A++ L L + C
Sbjct: 641 RR---LNLQ--NCTSITELSAVAQLPSLTELFVRNMKIKNKSVAFVARCATLEKLQMVEC 695
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL--------------- 259
V ++SL L L L+L+R ++ G + +LK LNL
Sbjct: 696 -VDITDVNSLKYLHRLVELDLSRTSVTSGGIVGLASCYNLKKLNLSGCRYLTEVNCLGEL 754
Query: 260 --------GFNEITDECLVHLKGLTNLESLNLDSC 286
G +TD +V L LE+L L +C
Sbjct: 755 RLLRELHLGRTTVTDSGIVGLCRCVQLETLTLTNC 789
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 107/247 (43%), Gaps = 35/247 (14%)
Query: 244 GCEKFSKIGSLKVLN-LGFNEITDECLVHLKGLTNL------ESLNLDSCGIGDEGLVNL 296
GC+ + + + L L EC V L+G+T++ E + I G+ NL
Sbjct: 132 GCDMMHVMSTCRELRALTVQNCFSECEVILRGVTSILSNRITEKREFSTFYIS--GVTNL 189
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSL-----------------------KSLNLDA 333
L+ L S+ L T +S+ + L+ SL K L+L
Sbjct: 190 GVLSKLRSLTLCNTPLSEVMMLYLSECVSLERVVMNSCRGLSSLECLSSLQRLKELSLLN 249
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
IT+ GLA ++S L H+ L S L + LR+L + ++D G++ +
Sbjct: 250 MGITEEGLAFISSCNSLQHIQLDNCMKLQS-INCLGSLLGLRTLSVSRNRVSDVGIQSLS 308
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
+L +L L L L+ ++E + L L+ L+++ +R+T G L ++ LTL
Sbjct: 309 NLKNLEQLRLVSFNRLS--SVEPVVCLDKLLELDLTENRVTDEGCAALANCGQIQKLTLA 366
Query: 454 SCKVTAN 460
SC+ ++
Sbjct: 367 SCRCVSD 373
>gi|225439576|ref|XP_002265215.1| PREDICTED: F-box/LRR-repeat protein 3 [Vitis vinifera]
gi|297735597|emb|CBI18091.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 165/357 (46%), Gaps = 24/357 (6%)
Query: 69 VTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKA 126
+ D L+ LK C +L+ LD + C +S GL L +L L+ + +T +
Sbjct: 239 IDDDSLVALKHGCKSLKKLDMSSCQNVSHVGLSSLTSDARSLQQLALAYGSPVTHALADS 298
Query: 127 FAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKS 184
L L + L+ C + GL + L +++ C +TD + L +L+
Sbjct: 299 LQDLSMLQSIKLDGCAVTYAGLKGIGNSCALLREVSLSKCLGVTDEGLSSLVMKHRDLRK 358
Query: 185 LQISC-SKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRC 238
L ++C K+T IAY+ LT L +E C + + ++ +G L L+L
Sbjct: 359 LDVTCCRKITQVSIAYITNSCPALTSLKMESCTLVPS--EAFVLIGQRCLCLEELDLTDN 416
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVN 295
++ D+G + S+ L L LG ITDE L H+ + L L+L C GI D G++
Sbjct: 417 EIDDEGLKSISRCFKLTSLKLGICLNITDEGLGHVGMCCSKLIELDLYRCVGITDSGILA 476
Query: 296 LT-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSL-NLDARQITDTGLAAL-TSLTGLT 351
+ G LE IN+++ I+D SL L+ L + + IT GLAA+ L
Sbjct: 477 IAHGCPGLEMINVAYCKDITDSSLISLSKCPRLNTFESRGCPSITSLGLAAIAVGCKQLA 536
Query: 352 HLDLFGAR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNL 403
LD+ I D+G L +F +NLR + + +TD G + I L S+T+L+L
Sbjct: 537 KLDIKKCHNINDAGMIPLAHFSQNLRQINLSYSSVTDVGLLSLASISCLQSMTILHL 593
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 33/188 (17%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN 117
L +DL+ +++ D GL + C L SL C+ I+D GL H+ S L L R
Sbjct: 408 LEELDLTDNEIDDEGLKSISRCFKLTSLKLGICLNITDEGLGHVGMCCSKLIELDLYRCV 467
Query: 118 AITAQGMKAFAG------LINLVK---------LDLERCTRIHG------------GLVN 150
IT G+ A A +IN+ + L +C R++ GL
Sbjct: 468 GITDSGILAIAHGCPGLEMINVAYCKDITDSSLISLSKCPRLNTFESRGCPSITSLGLAA 527
Query: 151 LK-GLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSG---IAYLKGLQK 205
+ G +L L+IK C+ I D+ M PL+ + NL+ + +S S VTD G +A + LQ
Sbjct: 528 IAVGCKQLAKLDIKKCHNINDAGMIPLAHFSQNLRQINLSYSSVTDVGLLSLASISCLQS 587
Query: 206 LTLLNLEG 213
+T+L+L+G
Sbjct: 588 MTILHLKG 595
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 175/403 (43%), Gaps = 49/403 (12%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQ-GSSLLSVDLSGSDV-TDSGLIHLK-DCSNLQSLDFN 89
L+ L L P + D + +I+ S+L S+DLS S + GL +L +CS L +D +
Sbjct: 74 LEHLDLSLCPRITDNSLTIISVLCKSTLRSIDLSQSRFFSHVGLWNLATNCSGLVEIDLS 133
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
++ D G + NL L R IT G+ A
Sbjct: 134 NATELRDAGAAAIAEAKNLERLWLARCKLITDMGIGCIA--------------------- 172
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
G KL S+++KWC + D + ++ ++ L +S +T+ + + LQ L
Sbjct: 173 --VGCKKLRSISLKWCLGVGDLGVGLIAVKCKQIRHLDLSYLPITNKCLPCILQLQYLED 230
Query: 209 LNLEGCPVTAACLDSLSAL----GSLFYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNLGF- 261
L L GC DSL AL SL L+++ CQ +S G S SL+ L L +
Sbjct: 231 LILVGCFSIDD--DSLVALKHGCKSLKKLDMSSCQNVSHVGLSSLTSDARSLQQLALAYG 288
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTN----LESINLSFT-GISDGS 316
+ +T L+ L+ L+S+ LD C + G L G+ N L ++LS G++D
Sbjct: 289 SPVTHALADSLQDLSMLQSIKLDGCAVTYAG---LKGIGNSCALLREVSLSKCLGVTDEG 345
Query: 317 LRKLA-GLSSLKSLNLD-ARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYL--RNF 371
L L L+ L++ R+IT +A +T S LT L + + S A L +
Sbjct: 346 LSSLVMKHRDLRKLDVTCCRKITQVSIAYITNSCPALTSLKMESCTLVPSEAFVLIGQRC 405
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L L++ + D G+K I LT L L N+TD+ L
Sbjct: 406 LCLEELDLTDNEIDDEGLKSISRCFKLTSLKLGICLNITDEGL 448
>gi|157865947|ref|XP_001681680.1| putative surface antigen protein [Leishmania major strain Friedlin]
gi|68124978|emb|CAJ02759.1| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 610
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 127/271 (46%), Gaps = 2/271 (0%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KV+ + A + L L++E C ++ A S++ SL +LNL+ ++S ++S
Sbjct: 143 KVSGTLPASWHSMTSLESLSIEKCESISGALPPQWSSMKSLSFLNLDGAKVSGSLPPQWS 202
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309
+ SL+ L+LG +++ +T L LNLD + + +T L +++
Sbjct: 203 SMKSLRTLDLGDTQVSGSLPPQWSSMTLLSFLNLDGAKVSGALPPQWSSMTLLAVLDVQG 262
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
T +S + + + SL LNL I+ + +S+T L LD+ G +++ +
Sbjct: 263 TQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAVLDVQGTQVSGTLPPQWS 322
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
+L SL++ G ++ + ++SLT LNL + ++ S +T L SL+V
Sbjct: 323 LMTSLTSLDVQGTQVSGSVPPQWSSMTSLTALNL-RGTQVSGTLPPQWSSMTSLTSLDVQ 381
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
++++ + +L +L ++ +V+
Sbjct: 382 GTQVSGTLPPQWSSMTSLAALDVQGTQVSGT 412
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 106/223 (47%), Gaps = 2/223 (0%)
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLES 304
+ +SK+ L L L N+++ +T+LESL+++ C I + + +L
Sbjct: 126 DSWSKLEKLTFLTLLGNKVSGTLPASWHSMTSLESLSIEKCESISGALPPQWSSMKSLSF 185
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+NL +S + + + SL++L+L Q++ + +S+T L+ L+L GA+++ +
Sbjct: 186 LNLDGAKVSGSLPPQWSSMKSLRTLDLGDTQVSGSLPPQWSSMTLLSFLNLDGAKVSGAL 245
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
+ L L++ G ++ + SL++LNL + +++ S +T L
Sbjct: 246 PPQWSSMTLLAVLDVQGTQVSGTLPPQWSSMKSLSVLNL-RGTSISGSVPPQWSSMTSLA 304
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
L+V ++++ + +L SL ++ +V+ + + S
Sbjct: 305 VLDVQGTQVSGTLPPQWSLMTSLTSLDVQGTQVSGSVPPQWSS 347
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 85/180 (47%), Gaps = 3/180 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL S+D+ G+ V+ S ++L +L+ Q+S +++LTSL +
Sbjct: 325 TSLTSLDVQGTQVSGSVPPQWSSMTSLTALNLRG-TQVSGTLPPQWSSMTSLTSLDVQ-G 382
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ ++ + +L LD++ T++ G L M+ + + ++ +
Sbjct: 383 TQVSGTLPPQWSSMTSLAALDVQG-TQVSGTLPPQWSSMRRLTHLLLTDTLLSGTLPAEW 441
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S L +L +LQ+S SKV+ + G+ K L L+ C ++ + S SA+ L +++L
Sbjct: 442 SALQSLVTLQLSSSKVSGTLPPQWSGMSKAQSLQLQDCDLSGSLPSSWSAIPMLAFVSLK 501
>gi|196234394|ref|ZP_03133221.1| hypothetical protein CfE428DRAFT_6389 [Chthoniobacter flavus
Ellin428]
gi|196221521|gb|EDY16064.1| hypothetical protein CfE428DRAFT_6389 [Chthoniobacter flavus
Ellin428]
Length = 393
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 90/197 (45%), Gaps = 23/197 (11%)
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSL 329
HL L LESLN+ S D+ + + LT L+ ++ + G ++D + KLAGL++L+S
Sbjct: 137 HLGHLHALESLNIISTKCNDDWIAPIGQLTTLKKLSFTNNGKLTDAGMEKLAGLTNLESF 196
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 388
N QIT A T T LTH+ G+ I D G L + NL S+ + TDAG
Sbjct: 197 NFVGTQITGRAYAKCTGWTKLTHVSHRGSSIDDEGLKELCDHLPNLESISLAHAHFTDAG 256
Query: 389 VKHIK---------DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
++ + T L L + L+L G TG S+
Sbjct: 257 APNLAKLKKLKGLELGAHATAAALQNLVGLPLEYLQLGEGFTGADSIAA----------- 305
Query: 440 HLKPLKNLRSLTLESCK 456
+KP+ LR LTL +CK
Sbjct: 306 -IKPISTLRRLTLTNCK 321
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 106/243 (43%), Gaps = 10/243 (4%)
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLK 273
P AA + L L +L LN+ + +DD ++ +LK L+ N ++TD + L
Sbjct: 129 PYDAAFFEHLGHLHALESLNIISTKCNDDWIAPIGQLTTLKKLSFTNNGKLTDAGMEKLA 188
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLD 332
GLTNLES N I TG T L ++ + I D L++L L +L+S++L
Sbjct: 189 GLTNLESFNFVGTQITGRAYAKCTGWTKLTHVSHRGSSIDDEGLKELCDHLPNLESISLA 248
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDA-GV 389
TD G L L L + AA L+N L LE G G T A +
Sbjct: 249 HAHFTDAGAPNLAKLKKLK----GLELGAHATAAALQNLVGL-PLEYLQLGEGFTGADSI 303
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
IK +S+L L L+ +L D L+L + L L + + L L+ L+
Sbjct: 304 AAIKPISTLRRLTLTNCKDLNDDGLKLAANLKQLEQIEFGFLELPDERLPQLQQFAFLKE 363
Query: 450 LTL 452
L L
Sbjct: 364 LKL 366
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 24/191 (12%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SA 226
+TD+ M+ L+GLTNL+S +++T A G KLT ++ G + L L
Sbjct: 179 LTDAGMEKLAGLTNLESFNFVGTQITGRAYAKCTGWTKLTHVSHRGSSIDDEGLKELCDH 238
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSK---------------------IG-SLKVLNLGFNEI 264
L +L ++L +D G +K +G L+ L LG
Sbjct: 239 LPNLESISLAHAHFTDAGAPNLAKLKKLKGLELGAHATAAALQNLVGLPLEYLQLGEGFT 298
Query: 265 TDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
+ + +K ++ L L L +C + D+GL L LE I F + D L +L
Sbjct: 299 GADSIAAIKPISTLRRLTLTNCKDLNDDGLKLAANLKQLEQIEFGFLELPDERLPQLQQF 358
Query: 324 SSLKSLNLDAR 334
+ LK L L R
Sbjct: 359 AFLKELKLIRR 369
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 50/250 (20%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+++ + D + + + L+ L F +++D G+E L GL+NL S +F
Sbjct: 143 ALESLNIISTKCNDDWIAPIGQLTTLKKLSFTNNGKLTDAGMEKLAGLTNLESFNF-VGT 201
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL- 176
IT +A+A +CT G KL ++ + + I D +K L
Sbjct: 202 QITG---RAYA-----------KCT----------GWTKLTHVSHR-GSSIDDEGLKELC 236
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQ------------KLTLLNLEGCPVT------- 217
L NL+S+ ++ + TD+G L L+ L NL G P+
Sbjct: 237 DHLPNLESISLAHAHFTDAGAPNLAKLKKLKGLELGAHATAAALQNLVGLPLEYLQLGEG 296
Query: 218 ---AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
A + ++ + +L L L C+ L+DDG + + + L+ + GF E+ DE L L+
Sbjct: 297 FTGADSIAAIKPISTLRRLTLTNCKDLNDDGLKLAANLKQLEQIEFGFLELPDERLPQLQ 356
Query: 274 GLTNLESLNL 283
L+ L L
Sbjct: 357 QFAFLKELKL 366
>gi|31540632|gb|AAP49010.1| CLV1-like receptor kinase [Brassica napus]
Length = 978
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 6/241 (2%)
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKP---LSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
+ +K L L+ LNI N + + P L+ + +L+ L + T + GL+K
Sbjct: 119 LEMKSLTSLKVLNI--SNNVNLNGTFPGEILTPMVDLEVLDAYNNNFTGPLPPEIPGLKK 176
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEI 264
L L+L G +T +S + SL YL LN LS + S++ +LK + +G FN
Sbjct: 177 LRHLSLGGNFLTGEIPESYGDIQSLEYLGLNGAGLSGESPAFLSRLKNLKEMYVGYFNSY 236
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS 324
T LTNLE L++ SC + E L+ L +L ++ L ++ +L+GL
Sbjct: 237 TGGVPPEFGELTNLEVLDMASCTLTGEIPTTLSNLKHLHTLFLHINNLTGNIPPELSGLI 296
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
SLKSL+L Q+T + SL +T ++LF + ++ + NL+ L++
Sbjct: 297 SLKSLDLSINQLTGEIPQSFISLWNITLVNLFRNNLHGPIPEFIGDMPNLQVLQVWENNF 356
Query: 385 T 385
T
Sbjct: 357 T 357
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 156/367 (42%), Gaps = 27/367 (7%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNLKGLMKLESLN 161
L NL + N+ T F L NL LD+ CT I L NLK L L L+
Sbjct: 222 LKNLKEMYVGYFNSYTGGVPPEFGELTNLEVLDMASCTLTGEIPTTLSNLKHLHTL-FLH 280
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
I N +T + LSGL +LKSL +S +++T L +TL+NL +
Sbjct: 281 I---NNLTGNIPPELSGLISLKSLDLSINQLTGEIPQSFISLWNITLVNLFRNNLHGPIP 337
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ + + +L L + + + + G+LK L++ N +T + L LE+L
Sbjct: 338 EFIGDMPNLQVLQVWENNFTLELPANLGRNGNLKKLDVSDNHLTGLIPMDLCRGGKLETL 397
Query: 282 NL-DSCGIG--DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L D+ G E L L + + G AGL +L + + ++TD
Sbjct: 398 VLSDNFFFGSIPEKLGRCKSLNKIRIVKNLLNGTVP------AGLFTLPLVTI--IELTD 449
Query: 339 TGLAALTSLTG------LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+ L G L H+ L T + NFKNL+ L + + + +
Sbjct: 450 NFFSG--ELPGEMSGDLLDHIYLSNNWFTGLIPPAIGNFKNLQDLFLDRNRFSGNIPREV 507
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+L LT +N S N NLT + IS T L+S+++S +RI + + + NL +L L
Sbjct: 508 FELKHLTKINTSAN-NLTGDIPDSISRCTSLISVDLSRNRIGGDIPKDIHDVINLGTLNL 566
Query: 453 ESCKVTA 459
++T
Sbjct: 567 SGNQLTG 573
>gi|189094695|emb|CAQ57366.1| expression site-associated gene 8 (ESAG8) protein [Trypanosoma
brucei brucei]
Length = 630
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 193/425 (45%), Gaps = 71/425 (16%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN--------- 116
GS++ D L L+D L+ LD + C + L + L NL L +R
Sbjct: 121 GSELQD--LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSS 178
Query: 117 ----------NAITAQGMKAFAGLINLVKLD---LERCTRIHGGLVNLKGLMKLESLNIK 163
++G+ GL L L+ L+ C I G + L +L SL++
Sbjct: 179 IGLLKFLVHLEVDGSRGVTDITGLFRLKTLEALSLDNCINITKGFDKICALPQLTSLSLC 238
Query: 164 WCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N +TD D++ + LK L I SC ++TD + + G++ L L+L GC L+
Sbjct: 239 QTN-VTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIGGMRSLEKLSLSGCWNVTKGLE 295
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGLTNL 278
L SL L+++ C + + +LKVL++ F ++ L+ L NL
Sbjct: 296 ELCKFSSLRELDISGCPVLGSAV-VLRNLINLKVLSVSNCKNFKDLNG-----LERLVNL 349
Query: 279 ESLNLDSC-GIGDEGLVNLTGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSLN 330
E LNL C G+ G V L+NL+ +++S F G+ D L++L+ L
Sbjct: 350 EKLNLSGCHGVSSLGFV--ANLSNLKELDISGCESLVCFDGLQD--------LNNLEVLY 399
Query: 331 L-DARQITDTGLAALTSLTGLTHLDLFGA-RITD-SGAAYLRNFKNLRSLEICGGGLTDA 387
L D + T+ G A+ +L+ + LDL G RIT SG L+ + L SLE CG ++
Sbjct: 400 LRDVKSFTNVG--AIKNLSKMRELDLSGCERITSLSGLETLKRLEEL-SLEGCGEIMS-- 454
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
I L L +L +S+ NL D L + G+TGL L + R + + P+ NL
Sbjct: 455 -FDPIWSLHHLRVLYVSECGNLED--LSGLEGITGLEELYLHGCRKCT----NFGPIWNL 507
Query: 448 RSLTL 452
R++ +
Sbjct: 508 RNVCV 512
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 184/420 (43%), Gaps = 62/420 (14%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+ L ++VTD L + L+ LD + C +I+D L + G+ +L LS
Sbjct: 231 QLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIGGMRSLEKLSLSGCW 288
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T +G++ +L +LD+ C + G V L+ L+ L+ L++ NC D+ L
Sbjct: 289 NVT-KGLEELCKFSSLRELDISGCP-VLGSAVVLRNLINLKVLSVS--NCKNFKDLNGLE 344
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L NL+ L +S C V S + ++ L L L++ GC + C D L L +L L L
Sbjct: 345 RLVNLEKLNLSGCHGV--SSLGFVANLSNLKELDISGCE-SLVCFDGLQDLNNLEVLYLR 401
Query: 237 RCQLSDDGCEKFSKIGSLKVLNL-------GFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ F+ +G++K L+ G IT L L+ L LE L+L+ CG
Sbjct: 402 DVK-------SFTNVGAIKNLSKMRELDLSGCERITS--LSGLETLKRLEELSLEGCG-- 450
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL---SSLKSLNLDA-RQITDTG----- 340
+++ + +L + + + G+L L+GL + L+ L L R+ T+ G
Sbjct: 451 --EIMSFDPIWSLHHLRVLYVS-ECGNLEDLSGLEGITGLEELYLHGCRKCTNFGPIWNL 507
Query: 341 ----------------LAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-G 382
L+ L LTGL L L G IT G + N +NL+ L C
Sbjct: 508 RNVCVLELSCCENLDDLSGLHCLTGLEELYLIGCEEITTIGV--VGNLRNLKCLSTCWCA 565
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L + G ++ L +L ++LS C L+ + L L SR+ L LK
Sbjct: 566 NLKELG--GLERLVNLEKVDLSGCCGLSSSVFMELMSLPKLQWFYGFGSRVPDIVLEELK 623
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 14/220 (6%)
Query: 249 SKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLTNLES 304
SK G K+LNL +E+ D L L+ L LE L+L C + E +V LT L NL
Sbjct: 107 SKNGRWKILNLSGCGSELQD--LTALRDLEALEDLDLSECANLELRELMVVLT-LRNLRK 163
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITD-TGLAALTSLTGLTHLDLFGARITD 362
+ + T ++D + L L L +D +R +TD TGL L +L L+ L
Sbjct: 164 LRMKRTMVNDMWCSSIGLLKFLVHLEVDGSRGVTDITGLFRLKTLEALS---LDNCINIT 220
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
G + L SL +C +TD ++ I L +L++S +TD L I G+
Sbjct: 221 KGFDKICALPQLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIGGMRS 278
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
L L++S + GL L +LR L + C V + +
Sbjct: 279 LEKLSLSGCWNVTKGLEELCKFSSLRELDISGCPVLGSAV 318
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 146/332 (43%), Gaps = 33/332 (9%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L L+ L LE L++ C + ++ + L NL+ L++ + V D + + L+ L
Sbjct: 127 LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSSIGLLKFLV 186
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L ++G + L L +L L+L+ C G +K + L L+L +TD+
Sbjct: 187 HLEVDGSRGVTD-ITGLFRLKTLEALSLDNCINITKGFDKICALPQLTSLSLCQTNVTDK 245
Query: 268 CLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L + L+ L++ SC I D L + G+ +LE ++LS L +L SSL
Sbjct: 246 DLRCIHPDGKLKVLDISSCHEITD--LTAIGGMRSLEKLSLSGCWNVTKGLEELCKFSSL 303
Query: 327 KSLNLDARQITDTG----------------------LAALTSLTGLTHLDLFGARITDSG 364
+ L++ + + L L L L L+L G S
Sbjct: 304 RELDISGCPVLGSAVVLRNLINLKVLSVSNCKNFKDLNGLERLVNLEKLNLSGCHGVSS- 362
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
++ N NL+ L+I G + ++DL++L +L L + T+ + I L+ +
Sbjct: 363 LGFVANLSNLKELDI-SGCESLVCFDGLQDLNNLEVLYLRDVKSFTN--VGAIKNLSKMR 419
Query: 425 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L++S RITS L L+ LK L L+LE C
Sbjct: 420 ELDLSGCERITS--LSGLETLKRLEELSLEGC 449
>gi|47217138|emb|CAG02639.1| unnamed protein product [Tetraodon nigroviridis]
Length = 411
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 143/331 (43%), Gaps = 48/331 (14%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
+GL+NL LS N I+ + F GL LV+LDL C L N+ + +E
Sbjct: 80 FKGLTNLVDLSMAHNEYISYLHTRTFTGLRRLVRLDLSDC-----NLFNIPDRIFIEQTA 134
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+K C + + + + G ++G++ LT + LE + A
Sbjct: 135 LKELLCFQN-NFRRIPGA--------------------IRGMENLTHIYLEANKIEAVAY 173
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+SL L SL YLNL +++ + F + L+ L N ++D + KGLT L+ L
Sbjct: 174 NSLLGLSSLRYLNLQENRINVIHDQAFQDLVQLENFYLNDNLLSDLPGLAFKGLTRLKML 233
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINL---SFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
NL + + + L LE + L I +G+ L+SL +L+L++ +T
Sbjct: 234 NLGGNQLTNVSNTWFSDLVELEVLYLDRNQLVSIEEGAFE---NLTSLITLHLNSNNLTS 290
Query: 339 TGLAALTSLTGLTHLDLFGARIT-DSGAAYLR----NFKNLRSLEICGGGLTDAGVKHIK 393
+ L HL LF T D +L+ N+K +R + C + AG+
Sbjct: 291 LPFRVFQPIYFLGHLFLFKNPWTCDCSILWLKDWMENYKLVRDIP-CASPSSVAGL---- 345
Query: 394 DLSSLTLLNLSQNC------NLTDKTLELIS 418
DLS + ++ C NLT +LE++S
Sbjct: 346 DLSMVVFAKVNGTCIDPSELNLTTASLEVLS 376
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 99/268 (36%), Gaps = 49/268 (18%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL-------------- 278
+NL + +L F + SLK L+LG N I+ KGLTNL
Sbjct: 41 INLEKNRLRFLSERAFGTLPSLKSLSLGHNNISFITPGAFKGLTNLVDLSMAHNEYISYL 100
Query: 279 -----------ESLNLDSC---GIGDEGLVNLT--------------------GLTNLES 304
L+L C I D + T G+ NL
Sbjct: 101 HTRTFTGLRRLVRLDLSDCNLFNIPDRIFIEQTALKELLCFQNNFRRIPGAIRGMENLTH 160
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
I L I + L GLSSL+ LNL +I A L L + L ++D
Sbjct: 161 IYLEANKIEAVAYNSLLGLSSLRYLNLQENRINVIHDQAFQDLVQLENFYLNDNLLSDLP 220
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
+ L+ L + G LT+ DL L +L L +N L LT L+
Sbjct: 221 GLAFKGLTRLKMLNLGGNQLTNVSNTWFSDLVELEVLYLDRN-QLVSIEEGAFENLTSLI 279
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+L+++++ +TS R +P+ L L L
Sbjct: 280 TLHLNSNNLTSLPFRVFQPIYFLGHLFL 307
>gi|301630098|ref|XP_002944165.1| PREDICTED: hypothetical protein LOC100485662 [Xenopus (Silurana)
tropicalis]
Length = 274
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 123/247 (49%), Gaps = 35/247 (14%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ ++V+++ N+I+D + L L +L +L+LD + L+ +T L L ++ LS
Sbjct: 1 MAEVRVVSVKHNQISD--VSSLVALKHLHTLHLDHTQVSQHSLMMVTSLPALSTLTLS-- 56
Query: 311 GI----SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-GARITDSGA 365
G+ SD L L+GLS + + R ++D GL+ L+ L L LDL +ITD G
Sbjct: 57 GVVSLNSDKVLEGLSGLSLTRVVLPGRRCLSDFGLSYLSGLRSLIELDLTDHTQITDQGV 116
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ-------------------- 405
Y+ LR+L +C ++D+G+ H++ L +L L+L +
Sbjct: 117 QYISALDMLRTLSLCNTSVSDSGLLHLRGLRNLENLSLDRTKVTSRGVSRCIPHLPHLQV 176
Query: 406 ----NCNLTDKTLEL-ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
+ N+ D L+ I LV +N+S +RIT+ GLR LK + ++ L+L+ +T
Sbjct: 177 LGLSDTNVGDNVLKHGIRHCRHLVKVNLSRTRITNKGLRFLKQV-SVTQLSLDGSGITPQ 235
Query: 461 DIKRLQS 467
+ L S
Sbjct: 236 ALSELMS 242
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 30/227 (13%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC---------------- 214
SD+ L L +L +L + ++V+ + + L L+ L L G
Sbjct: 15 SDVSSLVALKHLHTLHLDHTQVSQHSLMMVTSLPALSTLTLSGVVSLNSDKVLEGLSGLS 74
Query: 215 ------P----VTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
P ++ L LS L SL L+L + Q++D G + S + L+ L+L
Sbjct: 75 LTRVVLPGRRCLSDFGLSYLSGLRSLIELDLTDHTQITDQGVQYISALDMLRTLSLCNTS 134
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLTNLESINLSFTGISDGSLRK-LA 321
++D L+HL+GL NLE+L+LD + G+ + L +L+ + LS T + D L+ +
Sbjct: 135 VSDSGLLHLRGLRNLENLSLDRTKVTSRGVSRCIPHLPHLQVLGLSDTNVGDNVLKHGIR 194
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
L +NL +IT+ GL L ++ +T L L G+ IT + L
Sbjct: 195 HCRHLVKVNLSRTRITNKGLRFLKQVS-VTQLSLDGSGITPQALSEL 240
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
+SD GL +L GL +L L + IT QG++ + L L L L + GL++L+G
Sbjct: 86 LSDFGLSYLSGLRSLIELDLTDHTQITDQGVQYISALDMLRTLSLCNTSVSDSGLLHLRG 145
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS----GIAYLKGLQKLTL 208
L LE+L++ + + + L +L+ L +S + V D+ GI + + L K+ L
Sbjct: 146 LRNLENLSLDRTKVTSRGVSRCIPHLPHLQVLGLSDTNVGDNVLKHGIRHCRHLVKVNL 204
>gi|299470286|emb|CBN79590.1| LRR-GTPase of the ROCO family [Ectocarpus siliculosus]
Length = 1527
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 113/397 (28%), Positives = 165/397 (41%), Gaps = 11/397 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+G+ G + C NL Q+S L+ L L+ LTSL F R+N +T
Sbjct: 129 LTGAIPAQHGALSELSCLNLSK------TQLSGPILKELGALTKLTSL-FLRSNKLTGPI 181
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNL 182
L L LDL L L KL +LN+ N + P G L +
Sbjct: 182 PPELGKLAALESLDLTGNQLTGAIPAQLGDLNKLTALNL--SNNQLSGPIPPEVGKLGAV 239
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
K L + +K++ L L KL L L T + L +L +L L QLS
Sbjct: 240 KQLDLWGNKLSGPIPKELGALTKLASLFLRSNKFTDPIPPEMGNLSALQHLELQNNQLSG 299
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNL 302
+ + LK L L N++T L L L LNL + E +L ++ L
Sbjct: 300 PIPSEVGNLRELKTLWLSGNQLTGAIPAQLGALNELTCLNLSKNQLSGEIPASLGQVSKL 359
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
+S+ L +S ++L LS L L L+ +T L +LT LT L L ++T
Sbjct: 360 DSLYLHQNKLSGYIPKELGSLSKLGVLRLNNNDLTGPIPNELGALTKLTSLFLVCNKLTG 419
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
+ A L K L L + G L+ + L SLT LNL +N L + GLT
Sbjct: 420 AIPAQLAALKELTRLLLSGNQLSGPIPPGLGKLPSLTCLNLREN-ELNGPIPHELGGLTD 478
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
L L +S +++T L L L++L L + ++T
Sbjct: 479 LKVLGLSKNKLTGPIPPELGNLGALKTLDLGTNELTG 515
>gi|189094755|emb|CAQ57433.1| expression site-associated gene 8 (ESAG8) protein [Trypanosoma
brucei brucei]
Length = 630
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 131/442 (29%), Positives = 201/442 (45%), Gaps = 75/442 (16%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN--------- 116
GS++ D L L+D L+ LD + C + L + L NL L +R
Sbjct: 121 GSELQD--LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSS 178
Query: 117 ----------NAITAQGMKAFAGLINLVKLD---LERCTRIHGGLVNLKGLMKLESLNIK 163
++G+ GL L L+ L+ C I G + L +L SL++
Sbjct: 179 IGLLKFLVHLEVDGSRGVTDITGLCRLKTLEALSLDSCINITKGFDKICALPQLTSLSLC 238
Query: 164 WCNCITDSDMKPLSGLTNLKSLQI-SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACL 221
N +TD D++ + LK L I SC ++TD + IA ++ L+KL+ L GC L
Sbjct: 239 QTN-VTDKDLRCIHPDGKLKVLDISSCHEITDLTAIAVVRSLEKLS---LSGCWNVTKGL 294
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGLTN 277
+ L L SL L+++ C + + +LKVL++ F ++ L+ L N
Sbjct: 295 EELCKLSSLRELDISGCPVLGSAV-VLRNLINLKVLSVSNCKNFKDLNG-----LERLVN 348
Query: 278 LESLNLDSC-GIGDEGLVNLTGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSL 329
LE LNL C G+ G V L+NL+ +++S F G+ D L++L+ L
Sbjct: 349 LEKLNLSGCHGVSSLGFV--ANLSNLKELDISGCESLVCFDGLQD--------LNNLEVL 398
Query: 330 NL-DARQITDTGLAALTSLTGLTHLDLFGA-RITD-SGAAYLRNFKNLRSLEICGGGLTD 386
L D + T+ G A+ +L+ + LDL G RIT SG L+ + L SLE CG ++
Sbjct: 399 YLRDVKSFTNVG--AIKNLSKMRELDLSGCERITSLSGLETLKRLEEL-SLEGCGEIMS- 454
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
I L L +L +S+ NL D L + LTGL L + R + P+ N
Sbjct: 455 --FDPIWSLHHLRVLYVSECGNLED--LSGLQCLTGLEELYLHGCRKCTI----FGPIWN 506
Query: 447 LRSL-TLE-SCKVTANDIKRLQ 466
LR++ LE SC D+ LQ
Sbjct: 507 LRNVCVLELSCCENLEDLSGLQ 528
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 180/420 (42%), Gaps = 62/420 (14%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+ L ++VTD L + L+ LD + C +I+D L + + +L LS
Sbjct: 231 QLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIAVVRSLEKLSLSGCW 288
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T +G++ L +L +LD+ C + G V L+ L+ L+ L++ NC D+ L
Sbjct: 289 NVT-KGLEELCKLSSLRELDISGCP-VLGSAVVLRNLINLKVLSVS--NCKNFKDLNGLE 344
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L NL+ L +S C V S + ++ L L L++ GC + C D L L +L L L
Sbjct: 345 RLVNLEKLNLSGCHGV--SSLGFVANLSNLKELDISGCE-SLVCFDGLQDLNNLEVLYLR 401
Query: 237 RCQLSDDGCEKFSKIGSLKVLNL-------GFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ F+ +G++K L+ G IT L L+ L LE L+L+ CG
Sbjct: 402 DVK-------SFTNVGAIKNLSKMRELDLSGCERITS--LSGLETLKRLEELSLEGCG-- 450
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN----LDARQITDTG----- 340
+++ + +L + + + G+L L+GL L L R+ T G
Sbjct: 451 --EIMSFDPIWSLHHLRVLYVS-ECGNLEDLSGLQCLTGLEELYLHGCRKCTIFGPIWNL 507
Query: 341 ----------------LAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-G 382
L+ L LTGL L L G IT G + N +NL+ L C
Sbjct: 508 RNVCVLELSCCENLEDLSGLQCLTGLEELYLIGCEEITTIG--IVGNLRNLKCLSTCWCA 565
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L + G ++ L +L L+LS C L+ + L L SR+ L LK
Sbjct: 566 NLKELG--GLERLVNLEKLDLSGCCGLSSSVFMELMSLPKLQWFYGFGSRVPDIVLEELK 623
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 99/224 (44%), Gaps = 22/224 (9%)
Query: 249 SKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLTNLES 304
SK G K+LNL +E+ D L L+ L LE L+L C + E +V LT L NL
Sbjct: 107 SKNGRWKILNLSGCGSELQD--LTALRDLEALEDLDLSECANLELRELMVVLT-LRNLRK 163
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+ + T ++D + L L L +D G +T +TGL L A DS
Sbjct: 164 LRMKRTMVNDMWCSSIGLLKFLVHLEVD-------GSRGVTDITGLCRLKTLEALSLDSC 216
Query: 365 AAYLRNF------KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+ F L SL +C +TD ++ I L +L++S +TD L I+
Sbjct: 217 INITKGFDKICALPQLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIA 274
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
+ L L++S + GL L L +LR L + C V + +
Sbjct: 275 VVRSLEKLSLSGCWNVTKGLEELCKLSSLRELDISGCPVLGSAV 318
>gi|406830084|ref|ZP_11089678.1| hypothetical protein SpalD1_00552 [Schlesneria paludicola DSM
18645]
Length = 249
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%)
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
G+ G +T + +NL+ D + +L L +LE+++L +
Sbjct: 63 GTFSTEYFGPEWLTPSLRTQFPLFDRITVVNLNRGKNTDRVVPSLCLLKHLETLDLELSD 122
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
+SD L+ L LS L+ L L+ I D GL L LTGL L L G +ITD+G +L++
Sbjct: 123 VSDEGLKSLGRLSQLRGLGLNHTGIADIGLGYLRPLTGLQGLHLDGTKITDAGVKHLQSM 182
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+L+ L++ ++DAGV+ + DL L +LNL+++
Sbjct: 183 SHLQILKLSNTLVSDAGVEVLFDLHELQILNLAES 217
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 76/142 (53%)
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN 306
+F + V+NL + TD + L L +LE+L+L+ + DEGL +L L+ L +
Sbjct: 82 QFPLFDRITVVNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLG 141
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
L+ TGI+D L L L+ L+ L+LD +ITD G+ L S++ L L L ++D+G
Sbjct: 142 LNHTGIADIGLGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVE 201
Query: 367 YLRNFKNLRSLEICGGGLTDAG 388
L + L+ L + +T G
Sbjct: 202 VLFDLHELQILNLAESRVTRRG 223
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+NLNR + +D + L+ L+L ++++DE L L L+ L L L+ GI D G
Sbjct: 92 VNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGIADIG 151
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
L L LT L+ ++L T I+D ++ L +S L+ L L ++D G+ L L L
Sbjct: 152 LGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLHELQI 211
Query: 353 LDLFGARITDSGAAYLRN 370
L+L +R+T G LR
Sbjct: 212 LNLAESRVTRRGFVSLRQ 229
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 74/140 (52%)
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
++T++NL T + SL L L L+L +SD+G + ++ L+ L L I
Sbjct: 88 RITVVNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGI 147
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS 324
D L +L+ LT L+ L+LD I D G+ +L +++L+ + LS T +SD + L L
Sbjct: 148 ADIGLGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLH 207
Query: 325 SLKSLNLDARQITDTGLAAL 344
L+ LNL ++T G +L
Sbjct: 208 ELQILNLAESRVTRRGFVSL 227
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 26/168 (15%)
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+NL+ +D + L L L++L+L+ ++D GL +L L+ L L L I D G
Sbjct: 92 VNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGIADIG 151
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
YLR L+ L + G +TDAGVKH++ +S L +L LS
Sbjct: 152 LGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLS-------------------- 191
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
N+ ++ AG+ L L L+ L L +VT L+ + LPN
Sbjct: 192 -----NTLVSDAGVEVLFDLHELQILNLAESRVTRRGFVSLR-QALPN 233
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L LE+L+++ + ++D +K L L+ L+ L ++ + + D G+ YL+ L L L+L+G
Sbjct: 110 LKHLETLDLELSD-VSDEGLKSLGRLSQLRGLGLNHTGIADIGLGYLRPLTGLQGLHLDG 168
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+T A + L ++ L L L+ +SD G E + L++LNL + +T V L+
Sbjct: 169 TKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLHELQILNLAESRVTRRGFVSLR 228
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 5/185 (2%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ F L L+ ER R+ + ++ G E +W +T S +
Sbjct: 36 IPVFLALTILIPFLSER--RVARHVESMGGTFSTEYFGPEW---LTPSLRTQFPLFDRIT 90
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+ ++ K TD + L L+ L L+LE V+ L SL L L L LN ++D
Sbjct: 91 VVNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGIADI 150
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
G + L+ L+L +ITD + HL+ +++L+ L L + + D G+ L L L+
Sbjct: 151 GLGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLHELQ 210
Query: 304 SINLS 308
+NL+
Sbjct: 211 ILNLA 215
>gi|189094775|emb|CAQ57457.1| expression site-associated gene 8 (ESAG8) protein [Trypanosoma
brucei brucei]
Length = 630
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 122/425 (28%), Positives = 194/425 (45%), Gaps = 71/425 (16%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN--------- 116
GS++ D L L+D L+ LD + C + L + L NL L +R
Sbjct: 121 GSELQD--LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSS 178
Query: 117 ----------NAITAQGMKAFAGLINLVKLD---LERCTRIHGGLVNLKGLMKLESLNIK 163
++G+ GL L L+ L+ C I G + L +L SL++
Sbjct: 179 IGLLKFLVHLEVDGSRGVTDITGLCRLKTLEALSLDSCINITKGFDKICALPQLTSLSLC 238
Query: 164 WCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N +TD D++ + LK L I SC ++TD + + G++ L L+L GC L+
Sbjct: 239 QTN-VTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIGGVRSLEKLSLSGCWNVTKGLE 295
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGLTNL 278
L L SL L+++ C + + +LKVL++ F ++ L+ L NL
Sbjct: 296 ELCKLSSLRELDISGCPVLGSAV-VLRNLINLKVLSVSNCKNFKDLNG-----LERLVNL 349
Query: 279 ESLNLDSC-GIGDEGLVNLTGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSLN 330
E LNL C G+ G V L+NL+ +++S F G+ D L++L+ L
Sbjct: 350 EKLNLSGCHGVSSLGFV--ANLSNLKELDISGCESLVCFDGLQD--------LNNLEVLY 399
Query: 331 L-DARQITDTGLAALTSLTGLTHLDLFGA-RITD-SGAAYLRNFKNLRSLEICGGGLTDA 387
L D + T+ G A+ +L+ + LDL G RIT SG L+ + L SLE CG ++
Sbjct: 400 LRDVKSFTNVG--AIKNLSKIRELDLSGCERITSLSGLETLKRLEEL-SLEGCGEIMS-- 454
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
I L L +L +S+ NL D L + G+TGL L + R + + P+ NL
Sbjct: 455 -FDPIWSLHHLRVLYVSECGNLED--LSGLEGITGLEELYLHGCRKCT----NFGPIWNL 507
Query: 448 RSLTL 452
R++ +
Sbjct: 508 RNVCV 512
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 115/420 (27%), Positives = 185/420 (44%), Gaps = 62/420 (14%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+ L ++VTD L + L+ LD + C +I+D L + G+ +L LS
Sbjct: 231 QLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIGGVRSLEKLSLSGCW 288
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T +G++ L +L +LD+ C + G V L+ L+ L+ L++ NC D+ L
Sbjct: 289 NVT-KGLEELCKLSSLRELDISGCP-VLGSAVVLRNLINLKVLSVS--NCKNFKDLNGLE 344
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L NL+ L +S C V S + ++ L L L++ GC + C D L L +L L L
Sbjct: 345 RLVNLEKLNLSGCHGV--SSLGFVANLSNLKELDISGCE-SLVCFDGLQDLNNLEVLYLR 401
Query: 237 RCQLSDDGCEKFSKIGSLKVLNL-------GFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ F+ +G++K L+ G IT L L+ L LE L+L+ CG
Sbjct: 402 DVK-------SFTNVGAIKNLSKIRELDLSGCERITS--LSGLETLKRLEELSLEGCG-- 450
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL---SSLKSLNLDA-RQITDTG----- 340
+++ + +L + + + G+L L+GL + L+ L L R+ T+ G
Sbjct: 451 --EIMSFDPIWSLHHLRVLYVS-ECGNLEDLSGLEGITGLEELYLHGCRKCTNFGPIWNL 507
Query: 341 ----------------LAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-G 382
L+ L LTGL L L G IT G + N +NL+ L C
Sbjct: 508 RNVCVLELSCCENLDDLSGLHCLTGLEELYLIGCEEITTIGV--VGNLRNLKCLSTCWCA 565
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L + G ++ L +L ++LS C L+ + L L SR+ L LK
Sbjct: 566 NLKELG--GLERLVNLEKVDLSGCCGLSSSVFMELMSLPKLQWFYGFGSRVPDIVLEELK 623
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 99/224 (44%), Gaps = 22/224 (9%)
Query: 249 SKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLTNLES 304
SK G K+LNL +E+ D L L+ L LE L+L C + E +V LT L NL
Sbjct: 107 SKNGRWKILNLSGCGSELQD--LTALRDLEALEDLDLSECANLELRELMVVLT-LRNLRK 163
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+ + T ++D + L L L +D G +T +TGL L A DS
Sbjct: 164 LRMKRTMVNDMWCSSIGLLKFLVHLEVD-------GSRGVTDITGLCRLKTLEALSLDSC 216
Query: 365 AAYLRNF------KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+ F L SL +C +TD ++ I L +L++S +TD L I
Sbjct: 217 INITKGFDKICALPQLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIG 274
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
G+ L L++S + GL L L +LR L + C V + +
Sbjct: 275 GVRSLEKLSLSGCWNVTKGLEELCKLSSLRELDISGCPVLGSAV 318
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 147/332 (44%), Gaps = 33/332 (9%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L L+ L LE L++ C + ++ + L NL+ L++ + V D + + L+ L
Sbjct: 127 LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSSIGLLKFLV 186
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L ++G + L L +L L+L+ C G +K + L L+L +TD+
Sbjct: 187 HLEVDGSRGVTD-ITGLCRLKTLEALSLDSCINITKGFDKICALPQLTSLSLCQTNVTDK 245
Query: 268 CLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L + L+ L++ SC I D L + G+ +LE ++LS L +L LSSL
Sbjct: 246 DLRCIHPDGKLKVLDISSCHEITD--LTAIGGVRSLEKLSLSGCWNVTKGLEELCKLSSL 303
Query: 327 KSLNLDARQITDTG----------------------LAALTSLTGLTHLDLFGARITDSG 364
+ L++ + + L L L L L+L G S
Sbjct: 304 RELDISGCPVLGSAVVLRNLINLKVLSVSNCKNFKDLNGLERLVNLEKLNLSGCHGVSS- 362
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
++ N NL+ L+I G + ++DL++L +L L + T+ + I L+ +
Sbjct: 363 LGFVANLSNLKELDI-SGCESLVCFDGLQDLNNLEVLYLRDVKSFTN--VGAIKNLSKIR 419
Query: 425 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L++S RITS L L+ LK L L+LE C
Sbjct: 420 ELDLSGCERITS--LSGLETLKRLEELSLEGC 449
>gi|189094705|emb|CAQ57378.1| expression site-associated gene 8 (ESAG8) protein [Trypanosoma
brucei brucei]
gi|189094717|emb|CAQ57392.1| expression site-associated gene 8 (ESAG8) protein [Trypanosoma
brucei brucei]
Length = 630
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 193/425 (45%), Gaps = 71/425 (16%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN--------- 116
GS++ D L L+D L+ LD + C + L + L NL L +R
Sbjct: 121 GSELQD--LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSS 178
Query: 117 ----------NAITAQGMKAFAGLINLVKLD---LERCTRIHGGLVNLKGLMKLESLNIK 163
++G+ GL L L+ L+ C I G + L +L SL++
Sbjct: 179 IGLLKFLVHLEVDGSRGVTDITGLCRLKTLEALSLDSCINITKGFDKICALPQLTSLSLC 238
Query: 164 WCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N +TD D++ + LK L I SC ++TD + + G++ L L+L GC L+
Sbjct: 239 QTN-VTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIGGMRSLEKLSLSGCWNVTKGLE 295
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGLTNL 278
L SL L+++ C + + +LKVL++ F ++ L+ L NL
Sbjct: 296 ELCKFSSLRELDISGCPVLGSAV-VLRNLINLKVLSVSNCKNFKDLNG-----LERLVNL 349
Query: 279 ESLNLDSC-GIGDEGLVNLTGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSLN 330
E LNL C G+ G V L+NL+ +++S F G+ D L++L+ L
Sbjct: 350 EKLNLSGCHGVSSLGFV--ANLSNLKELDISGCESLVCFDGLQD--------LNNLEVLY 399
Query: 331 L-DARQITDTGLAALTSLTGLTHLDLFGA-RITD-SGAAYLRNFKNLRSLEICGGGLTDA 387
L D + T+ G A+ +L+ + LDL G RIT SG L+ + L SLE CG ++
Sbjct: 400 LRDVKSFTNVG--AIKNLSKMRELDLSGCERITSLSGLETLKRLEEL-SLEGCGEIMS-- 454
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
I L L +L +S+ NL D L + G+TGL L + R + + P+ NL
Sbjct: 455 -FDPIWSLHHLRVLYVSECGNLED--LSGLEGITGLEELYLHGCRKCT----NFGPIWNL 507
Query: 448 RSLTL 452
R++ +
Sbjct: 508 RNVCV 512
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 184/420 (43%), Gaps = 62/420 (14%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+ L ++VTD L + L+ LD + C +I+D L + G+ +L LS
Sbjct: 231 QLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIGGMRSLEKLSLSGCW 288
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T +G++ +L +LD+ C + G V L+ L+ L+ L++ NC D+ L
Sbjct: 289 NVT-KGLEELCKFSSLRELDISGCP-VLGSAVVLRNLINLKVLSVS--NCKNFKDLNGLE 344
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L NL+ L +S C V S + ++ L L L++ GC + C D L L +L L L
Sbjct: 345 RLVNLEKLNLSGCHGV--SSLGFVANLSNLKELDISGCE-SLVCFDGLQDLNNLEVLYLR 401
Query: 237 RCQLSDDGCEKFSKIGSLKVLNL-------GFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ F+ +G++K L+ G IT L L+ L LE L+L+ CG
Sbjct: 402 DVK-------SFTNVGAIKNLSKMRELDLSGCERITS--LSGLETLKRLEELSLEGCG-- 450
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL---SSLKSLNLDA-RQITDTG----- 340
+++ + +L + + + G+L L+GL + L+ L L R+ T+ G
Sbjct: 451 --EIMSFDPIWSLHHLRVLYVS-ECGNLEDLSGLEGITGLEELYLHGCRKCTNFGPIWNL 507
Query: 341 ----------------LAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-G 382
L+ L LTGL L L G IT G + N +NL+ L C
Sbjct: 508 RNVCVLELSCCENLDDLSGLHCLTGLEELYLIGCEEITTIGV--VGNLRNLKCLSTCWCA 565
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L + G ++ L +L ++LS C L+ + L L SR+ L LK
Sbjct: 566 NLKELG--GLERLVNLEKVDLSGCCGLSSSVFMELMSLPKLQWFYGFGSRVPDIVLEELK 623
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 98/224 (43%), Gaps = 22/224 (9%)
Query: 249 SKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLTNLES 304
SK G K+LNL +E+ D L L+ L LE L+L C + E +V LT L NL
Sbjct: 107 SKNGRWKILNLSGCGSELQD--LTALRDLEALEDLDLSECANLELRELMVVLT-LRNLRK 163
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+ + T ++D + L L L +D G +T +TGL L A DS
Sbjct: 164 LRMKRTMVNDMWCSSIGLLKFLVHLEVD-------GSRGVTDITGLCRLKTLEALSLDSC 216
Query: 365 AAYLRNF------KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+ F L SL +C +TD ++ I L +L++S +TD L I
Sbjct: 217 INITKGFDKICALPQLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIG 274
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
G+ L L++S + GL L +LR L + C V + +
Sbjct: 275 GMRSLEKLSLSGCWNVTKGLEELCKFSSLRELDISGCPVLGSAV 318
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 146/332 (43%), Gaps = 33/332 (9%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L L+ L LE L++ C + ++ + L NL+ L++ + V D + + L+ L
Sbjct: 127 LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSSIGLLKFLV 186
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L ++G + L L +L L+L+ C G +K + L L+L +TD+
Sbjct: 187 HLEVDGSRGVTD-ITGLCRLKTLEALSLDSCINITKGFDKICALPQLTSLSLCQTNVTDK 245
Query: 268 CLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L + L+ L++ SC I D L + G+ +LE ++LS L +L SSL
Sbjct: 246 DLRCIHPDGKLKVLDISSCHEITD--LTAIGGMRSLEKLSLSGCWNVTKGLEELCKFSSL 303
Query: 327 KSLNLDARQITDTG----------------------LAALTSLTGLTHLDLFGARITDSG 364
+ L++ + + L L L L L+L G S
Sbjct: 304 RELDISGCPVLGSAVVLRNLINLKVLSVSNCKNFKDLNGLERLVNLEKLNLSGCHGVSS- 362
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
++ N NL+ L+I G + ++DL++L +L L + T+ + I L+ +
Sbjct: 363 LGFVANLSNLKELDI-SGCESLVCFDGLQDLNNLEVLYLRDVKSFTN--VGAIKNLSKMR 419
Query: 425 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L++S RITS L L+ LK L L+LE C
Sbjct: 420 ELDLSGCERITS--LSGLETLKRLEELSLEGC 449
>gi|290986246|ref|XP_002675835.1| predicted protein [Naegleria gruberi]
gi|284089434|gb|EFC43091.1| predicted protein [Naegleria gruberi]
Length = 820
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 2/198 (1%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L CP + ++ L + L L+ + D+G + S++ L L++ N I E
Sbjct: 606 LTLNKCP-SNELINFLKKMKQLTLLDF-IYNIGDEGAKLISEMKQLTSLDISENNIGVEG 663
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
++ + L SLN+ IG EG+ ++ + L S+++S+ I + ++ + L S
Sbjct: 664 AKYISEMKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTS 723
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L++ I G ++ + LT LD+ +I D GA Y+ K L SL I + G
Sbjct: 724 LDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEG 783
Query: 389 VKHIKDLSSLTLLNLSQN 406
VK+I ++ LT L++S N
Sbjct: 784 VKYISEMKQLTSLDISYN 801
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 103/211 (48%), Gaps = 13/211 (6%)
Query: 197 IAYLKGLQKLTLLNL------EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
I +LK +++LTLL+ EG + +S + L L+++ + +G + S+
Sbjct: 617 INFLKKMKQLTLLDFIYNIGDEGAKL-------ISEMKQLTSLDISENNIGVEGAKYISE 669
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ L LN+ NEI E + ++ + L SL++ IG EG ++ + L S+++S
Sbjct: 670 MKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTSLDISEN 729
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I + ++ + L SL+++ +I D G ++ + LT L++ I G Y+
Sbjct: 730 NIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEGVKYISE 789
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
K L SL+I + G K++ ++ + T+
Sbjct: 790 MKQLTSLDISYNKIGVEGAKYLSEMKTKTIY 820
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 90/181 (49%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+ D G + +++LT L++ + +S + L LN+ R ++ +G + S++
Sbjct: 635 IGDEGAKLISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLNICRNEIGVEGVKYISEM 694
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTG 311
L L++ +N+I E ++ + L SL++ IG EG ++ + L S+++++
Sbjct: 695 KQLTSLDISYNKIGVEGAKYISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYNK 754
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
I D + ++ + L SLN+ +I G+ ++ + LT LD+ +I GA YL
Sbjct: 755 IGDEGAKYISKMKQLTSLNIRRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYLSEM 814
Query: 372 K 372
K
Sbjct: 815 K 815
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 28/223 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK L LDF + I D G + + + LTSL NN I +G K + + L L
Sbjct: 620 LKKMKQLTLLDFIY--NIGDEGAKLISEMKQLTSLDISENN-IGVEGAKYISEMKQLTSL 676
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ R N I +K +S + L SL IS +K+ G
Sbjct: 677 NICR-------------------------NEIGVEGVKYISEMKQLTSLDISYNKIGVEG 711
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
Y+ +++LT L++ + +S + L L++N ++ D+G + SK+ L
Sbjct: 712 AKYISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTS 771
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
LN+ NEI E + ++ + L SL++ IG EG L+ +
Sbjct: 772 LNIRRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYLSEM 814
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S +++ G ++ + L SLD N+ +I D G +++ + LTSL+
Sbjct: 716 SEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYN-KIGDEGAKYISKMKQLTSLNI 774
Query: 114 RRNNAITAQGMKAFAGLINLVKLDL 138
RR N I +G+K + + L LD+
Sbjct: 775 RR-NEIGVEGVKYISEMKQLTSLDI 798
>gi|21757336|dbj|BAC05092.1| unnamed protein product [Homo sapiens]
gi|119603710|gb|EAW83304.1| F-box and leucine-rich repeat protein 13, isoform CRA_g [Homo
sapiens]
Length = 735
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 116/429 (27%), Positives = 195/429 (45%), Gaps = 70/429 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + P D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 247 LQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 306
Query: 92 IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG + A G+++L
Sbjct: 307 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDN 366
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK +E+C+RI H + L KL + + +TD+ K +
Sbjct: 367 CVKALVEKCSRITSLVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYP 426
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-----ACLDSLSALGSLFYLN 234
NL + ++ C +TDS + L L++LT+LNL C LD +++ + LN
Sbjct: 427 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRIGDMGLKQFLDGPASM-RIRELN 485
Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
L+ C +LSD K S + C NL L+L +C + +G
Sbjct: 486 LSNCVRLSDASVMKLS----------------ERC-------PNLNYLSLRNCEHLTAQG 522
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGL 350
+ + + +L SI+LS T IS+ L L+ LK L++ + +ITD G+ A S L
Sbjct: 523 IGYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLIL 582
Query: 351 THLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQN 406
HLD+ + ++++D L + NL SL I G +TD+ ++ + L +L++S
Sbjct: 583 EHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGC 642
Query: 407 CNLTDKTLE 415
LTD+ LE
Sbjct: 643 VLLTDQILE 651
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 10/188 (5%)
Query: 83 LQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
++ L+ + C+++SD + L NL LS R +TAQG+ + +LV +DL
Sbjct: 481 IRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGT 540
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIA 198
+ GL L KL+ L++ C ITD ++ S L L+ L +S CS+++D I
Sbjct: 541 DISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLI-LEHLDVSYCSQLSDMIIK 599
Query: 199 YLK-GLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIG--S 253
L LT L++ GCP +T + ++ LSA L L+++ C L D + +IG
Sbjct: 600 ALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGCVLLTDQILEDLQIGCKQ 659
Query: 254 LKVLNLGF 261
L++L + +
Sbjct: 660 LRILKMQY 667
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+DLSG+D+++ GL L L+ L + C +I+D G++ +F +++
Sbjct: 531 SLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQ-----------AFCKSS 579
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKP 175
I L LD+ C+++ ++ + + L SL+I C ITDS M+
Sbjct: 580 LI-------------LEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEM 626
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + L L IS C +TD + L+ G ++L +L ++ C
Sbjct: 627 LSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYC 668
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 128/284 (45%), Gaps = 21/284 (7%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV--LNLGFNEITD 266
LN GC + S+S +L LN++ C D + G V LNL IT+
Sbjct: 226 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITN 285
Query: 267 ECLVHL-KGLTNLESLNLDSC-GIGDEGLVNL---TGLTNLESINLS-FTGISDGSLRKL 320
+ L + NL++L+L C D+GL L G L ++LS T IS R +
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 321 A-GLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFGA-RITDSGAAYLRNFKNLRS 376
A + + L + D +TD + AL + +T L GA I+D L K LR
Sbjct: 346 ANSCTGIMHLTINDMPTLTDNCVKALVEKCSRITSLVFTGAPHISDCTFRALSACK-LRK 404
Query: 377 LEICGGG-LTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RI 433
+ G +TDA K I K+ +L+ + ++ +TD +L +S L L LN++N RI
Sbjct: 405 IRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRI 464
Query: 434 TSAGLRHL---KPLKNLRSLTLESC-KVTANDIKRLQSRDLPNL 473
GL+ +R L L +C +++ + +L R PNL
Sbjct: 465 GDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSER-CPNL 507
>gi|290991576|ref|XP_002678411.1| predicted protein [Naegleria gruberi]
gi|284092023|gb|EFC45667.1| predicted protein [Naegleria gruberi]
Length = 153
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
L LN+G+NEIT E + + L SL + + I D+G L+ + L S+N+S S
Sbjct: 4 LTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNNETS 63
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
D + ++ + L SL + QI D G ++ + LT L++ I+D GA Y+ K
Sbjct: 64 DEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISEMKQ 123
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLL 401
L L I ++D G K++ ++ LT L
Sbjct: 124 LTLLYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN+ +++ +G + S++ L L + NEI+D+ +L + L SLN+ + DEG
Sbjct: 7 LNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNNETSDEG 66
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+++ + L S+ + I D + ++ + L SLN+ +I+D G ++ + LT
Sbjct: 67 AKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISEMKQLTL 126
Query: 353 LDLFGARITDSGAAYLRNFKNLRSL 377
L ++ I+D GA YL K L SL
Sbjct: 127 LYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 1/152 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI + N IT K +S + L SL I ++++D G YL +++LT LN+
Sbjct: 1 MKQLTSLNIGY-NEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSN 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L L + Q+ D G + S++ L LN+G+NEI+DE ++
Sbjct: 60 NETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYIS 119
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
+ L L + + I D+G L+ + L S+
Sbjct: 120 EMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I +++T G ++ +++LT L + ++ LS + L LN++
Sbjct: 1 MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ SD+G + S++ L L + N+I D+ ++ + L SLN+ I DEG ++
Sbjct: 61 ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+ L + + ISD + L+ + L SL
Sbjct: 121 MKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 9/154 (5%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSNLTSLSFRR 115
L S+++ +++T G + + L SL CI +ISD G ++L + LTSL+
Sbjct: 4 LTSLNIGYNEITVEGAKFISEMKQLTSL----CIYNNEISDKGAKYLSEMKQLTSLNV-S 58
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN + +G K + + L L + G + + +L SLNI + N I+D K
Sbjct: 59 NNETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGY-NEISDEGAKY 117
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+S + L L I ++++D G YL +++LT L
Sbjct: 118 ISEMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
K L SL I +T G K I ++ LT L + N ++DK + +S + L SLNVSN
Sbjct: 1 MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNN-EISDKGAKYLSEMKQLTSLNVSN 59
Query: 431 SRITSAGLRHLKPLKNLRSLTL 452
+ + G +H+ +K L SL +
Sbjct: 60 NETSDEGAKHISEMKQLTSLYI 81
>gi|290979178|ref|XP_002672311.1| predicted protein [Naegleria gruberi]
gi|284085887|gb|EFC39567.1| predicted protein [Naegleria gruberi]
Length = 347
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 113/258 (43%), Gaps = 23/258 (8%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE------------------ 279
+L+D+ + F K+ L L + + EI + +V LK LT L
Sbjct: 84 KLNDEWFDVFEKMNQLTELQIDWVREIDLKRIVDLKQLTKLSVCSCTEDVEQVKLIGEMK 143
Query: 280 ---SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L + S GDEG + G+T L + + I + L L LK L + +
Sbjct: 144 QLTELKISSNKFGDEGAKIIGGMTQLTKLEIKSNRIGKLGAKALCNLKELKELRISENAL 203
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
+G +++ L LT L + ++ GA + NL +L IC + AG K I +
Sbjct: 204 GASGAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNLTNLSICSDQIGAAGAKSISKMK 263
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
L L+ N + DK + I + L SL++S + I G + + LKNLR L + +
Sbjct: 264 QLLTLSADGNA-IGDKGAKAIGEMKQLTSLHLSFNHIGFEGAKAISELKNLRYLNMTTNP 322
Query: 457 VTANDIKRLQSRDLPNLV 474
+++ + LQ+ LP L+
Sbjct: 323 LSSEGAQLLQNMKLPKLI 340
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 136/308 (44%), Gaps = 16/308 (5%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVT---DSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
++ +W++VI + S LS S V + G +H + F +++D +
Sbjct: 39 ISKQWLEVIKQR--SKLSACFSNPKVNRVMEKGFLHY-----FVKIKFKSVYKLNDEWFD 91
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LES 159
++ LT L + + +K L L KL + CT V L G MK L
Sbjct: 92 VFEKMNQLTELQI---DWVREIDLKRIVDLKQLTKLSVCSCTE-DVEQVKLIGEMKQLTE 147
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L I N D K + G+T L L+I +++ G L L++L L + + A+
Sbjct: 148 LKIS-SNKFGDEGAKIIGGMTQLTKLEIKSNRIGKLGAKALCNLKELKELRISENALGAS 206
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
S+S L L L ++ QL +G + S+I +L L++ ++I + + L
Sbjct: 207 GAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNLTNLSICSDQIGAAGAKSISKMKQLL 266
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+L+ D IGD+G + + L S++LSF I + ++ L +L+ LN+ ++
Sbjct: 267 TLSADGNAIGDKGAKAIGEMKQLTSLHLSFNHIGFEGAKAISELKNLRYLNMTTNPLSSE 326
Query: 340 GLAALTSL 347
G L ++
Sbjct: 327 GAQLLQNM 334
>gi|18413552|emb|CAD21884.1| ESAG8 [Trypanosoma brucei]
gi|189094626|emb|CAQ57286.1| expression site-associated gene 8 (ESAG8) protein [Trypanosoma
brucei brucei]
Length = 630
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 131/442 (29%), Positives = 201/442 (45%), Gaps = 75/442 (16%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN--------- 116
GS++ D L L+D L+ LD + C + L + L NL L +R
Sbjct: 121 GSELQD--LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSS 178
Query: 117 ----------NAITAQGMKAFAGLINLVKLD---LERCTRIHGGLVNLKGLMKLESLNIK 163
++G+ GL L L+ L+ C I G + L +L SL++
Sbjct: 179 IGLLKFLVHLEVDGSRGVTDITGLCRLKTLEALSLDSCINITKGFDKICALPQLTSLSLC 238
Query: 164 WCNCITDSDMKPLSGLTNLKSLQI-SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACL 221
N +TD D++ + LK L I SC ++TD + IA ++ L+KL+ L GC L
Sbjct: 239 QTN-VTDKDLRCIHPDGKLKVLDISSCHEITDLTAIAVVRSLEKLS---LSGCWNVTKGL 294
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGLTN 277
+ L L SL L+++ C + + +LKVL++ F ++ L+ L N
Sbjct: 295 EELCKLSSLRELDISGCPVLGSAV-VLRNLINLKVLSVSNCKNFKDLNG-----LERLVN 348
Query: 278 LESLNLDSC-GIGDEGLVNLTGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSL 329
LE LNL C G+ G V L+NL+ +++S F G+ D L++L+ L
Sbjct: 349 LEKLNLSGCHGVSSLGFV--ANLSNLKELDISGCESLVCFDGLQD--------LNNLEVL 398
Query: 330 NL-DARQITDTGLAALTSLTGLTHLDLFGA-RITD-SGAAYLRNFKNLRSLEICGGGLTD 386
L D + T+ G A+ +L+ + LDL G RIT SG L+ + L SLE CG ++
Sbjct: 399 YLRDVKSFTNVG--AIKNLSKMRELDLSGCERITSLSGLETLKRLEEL-SLEGCGEIMS- 454
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
I L L +L +S+ NL D L + LTGL L + R + P+ N
Sbjct: 455 --FDPIWSLHHLRVLYVSECGNLED--LSGLQCLTGLEELYLHGCRKCTI----FGPIWN 506
Query: 447 LRSL-TLE-SCKVTANDIKRLQ 466
LR++ LE SC D+ LQ
Sbjct: 507 LRNVCVLELSCCENLEDLSGLQ 528
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 113/420 (26%), Positives = 180/420 (42%), Gaps = 62/420 (14%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+ L ++VTD L + L+ LD + C +I+D L + + +L LS
Sbjct: 231 QLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIAVVRSLEKLSLSGCW 288
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T +G++ L +L +LD+ C + G V L+ L+ L+ L++ NC D+ L
Sbjct: 289 NVT-KGLEELCKLSSLRELDISGCP-VLGSAVVLRNLINLKVLSVS--NCKNFKDLNGLE 344
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L NL+ L +S C V S + ++ L L L++ GC + C D L L +L L L
Sbjct: 345 RLVNLEKLNLSGCHGV--SSLGFVANLSNLKELDISGCE-SLVCFDGLQDLNNLEVLYLR 401
Query: 237 RCQLSDDGCEKFSKIGSLKVLNL-------GFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ F+ +G++K L+ G IT L L+ L LE L+L+ CG
Sbjct: 402 DVK-------SFTNVGAIKNLSKMRELDLSGCERITS--LSGLETLKRLEELSLEGCG-- 450
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN----LDARQITDTG----- 340
+++ + +L + + + G+L L+GL L L R+ T G
Sbjct: 451 --EIMSFDPIWSLHHLRVLYVS-ECGNLEDLSGLQCLTGLEELYLHGCRKCTIFGPIWNL 507
Query: 341 ----------------LAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-G 382
L+ L LTGL L L G IT G + N +NL+ L C
Sbjct: 508 RNVCVLELSCCENLEDLSGLQCLTGLEELYLIGCEEITTIG--IVGNLRNLKCLSTCWCA 565
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L + G ++ L +L ++LS C L+ + L L SR+ L LK
Sbjct: 566 NLKELG--GLERLVNLEKVDLSGCCGLSSSVFMELMSLPKLQWFYGFGSRVPDIVLEELK 623
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 99/224 (44%), Gaps = 22/224 (9%)
Query: 249 SKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLTNLES 304
SK G K+LNL +E+ D L L+ L LE L+L C + E +V LT L NL
Sbjct: 107 SKNGRWKILNLSGCGSELQD--LTALRDLEALEDLDLSECANLELRELMVVLT-LRNLRK 163
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+ + T ++D + L L L +D G +T +TGL L A DS
Sbjct: 164 LRMKRTMVNDMWCSSIGLLKFLVHLEVD-------GSRGVTDITGLCRLKTLEALSLDSC 216
Query: 365 AAYLRNF------KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+ F L SL +C +TD ++ I L +L++S +TD L I+
Sbjct: 217 INITKGFDKICALPQLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIA 274
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
+ L L++S + GL L L +LR L + C V + +
Sbjct: 275 VVRSLEKLSLSGCWNVTKGLEELCKLSSLRELDISGCPVLGSAV 318
>gi|297171917|gb|ADI22904.1| hypothetical protein [uncultured Rhizobium sp. HF0500_35F13]
Length = 412
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 95/196 (48%), Gaps = 2/196 (1%)
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A + G + +T+ +T L+ L LG++ YL+L+ + DDG +K+ L+VL
Sbjct: 41 AQVSGTRSVTV-RFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVL 99
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSL 317
L EITD L L++L L +GD L T L ++++ ++D L
Sbjct: 100 VLSGTEITDTGFSQLSNLSDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGL 158
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
L+G+ +LK L L ITD GL L S+T L L L +ITD G L NL L
Sbjct: 159 SHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTKITDEGLLLLEGLSNLNVL 218
Query: 378 EICGGGLTDAGVKHIK 393
I G G T GV ++
Sbjct: 219 AITGTGTTLNGVTKLQ 234
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
Query: 159 SLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
S+ +++ N +T D++PL L + L +S + V D G+ ++ L+ L +L L G +T
Sbjct: 48 SVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEIT 107
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
LS L L L + + D + L L++ ++TD L HL G+ N
Sbjct: 108 DTGFSQLSNLSDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGLSHLSGMKN 166
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
L+ L L I D+GL +L +T L + L+ T I+D
Sbjct: 167 LKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTKITD 203
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 78/162 (48%), Gaps = 14/162 (8%)
Query: 304 SINLSFT--GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
S+ + FT ++ L L L ++ L+L + D G+ + L GL L L G IT
Sbjct: 48 SVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEIT 107
Query: 362 DSGAAYLRNFKNLRSL---EICGGGLTDAGVKHIKDLSSLTLLNL--SQNCNLTDKTLEL 416
D+G + L N +L L E+ G G T A L+S T LN +TD L
Sbjct: 108 DTGFSQLSNLSDLNQLTASELMGDGTTAA-------LASATKLNFLDMTGGQVTDSGLSH 160
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+SG+ L L +S + IT GL HL+ + LR L L + K+T
Sbjct: 161 LSGMKNLKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTKIT 202
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 9/177 (5%)
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL---DL 355
L + ++LS T + D + + L L+ L L +ITDTG + L++L+ L L +L
Sbjct: 69 LGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDTGFSQLSNLSDLNQLTASEL 128
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
G D A L + L L++ GG +TD+G+ H+ + +L L LS+ +TDK LE
Sbjct: 129 MG----DGTTAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTA-ITDKGLE 183
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
+ +T L L ++N++IT GL L+ L NL L + T N + +LQ+ LP+
Sbjct: 184 HLQSITVLRDLQLNNTKITDEGLLLLEGLSNLNVLAITGTGTTLNGVTKLQAA-LPD 239
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR--NNAI 119
+DLS + V D G++H+ LQ L + +I+D G L LS+L L+ +
Sbjct: 75 LDLSDTSVGDDGMVHINKLEGLQVLVLS-GTEITDTGFSQLSNLSDLNQLTASELMGDGT 133
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
TA A A L LD+ GL +L G+ L+ L + ITD ++ L +
Sbjct: 134 TA----ALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQSI 188
Query: 180 TNLKSLQISCSKVTD 194
T L+ LQ++ +K+TD
Sbjct: 189 TVLRDLQLNNTKITD 203
>gi|397563975|gb|EJK44014.1| hypothetical protein THAOC_37488 [Thalassiosira oceanica]
Length = 1585
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 141/451 (31%), Positives = 215/451 (47%), Gaps = 55/451 (12%)
Query: 38 LGQYPGV-NDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQIS 95
L Q+ V D+ + I+ ++ ++LSG+D VTD G+ L CS LQ L+ + ++
Sbjct: 585 LSQWSLVATDECIHTISCHNHDIIHLNLSGADAVTDEGIQSLSKCSQLQELNLDNIFRLQ 644
Query: 96 DGGLEHLRGLSNLTSL--SFRRNNAITAQGMKA--FAGL----INLVKLDLERCTRIHGG 147
G LS +T + R + G+KA FA L LV L L C +I
Sbjct: 645 TG-------LSLVTERCCAIRDLSLCGCLGLKAPQFASLGQNARGLVSLKLSGCRQITPW 697
Query: 148 LVN--LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKVTDSGIAYL-KG 202
+GL LE L+I +C+ +TD ++K LS T L+ L + C V+D G+ +L +G
Sbjct: 698 AFTKLFEGLKLLEILDISYCSLVTDQEIKLLSESATGLRCLNLRECKLVSDIGLTFLSQG 757
Query: 203 LQKLTLLNLEGCPVTAACLD-SLSALG----SLFYLNLNRCQL-SDDGCEKFSKIG-SLK 255
+L LNL + D +L +G SL LNL+ C+L SD G + L+
Sbjct: 758 CTELVDLNLRRSELPFRVTDVALLQIGQGCRSLRALNLHGCELISDTGLSWLASWAKQLR 817
Query: 256 VLNLG-FNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLT-GLTNLESINLS-FT 310
+NL +IT+ HL G NL S L + + D GL L G + LE++N S
Sbjct: 818 HVNLANCTKITNAGARHLGDGCPNLISAVLTNVKRVSDVGLRCLANGCSKLETLNCSGLA 877
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLR 369
+SDG R+ GL L++ L A + T L +L++ G + + +
Sbjct: 878 MLSDGVDREF-GLEGLQA------------LGASSCSTTLKNLNIRGCTLISTLSMRAIS 924
Query: 370 NFKNLRSLEICGGG-LTDAGVKHI-KDLSSLTLLNLSQ--NCNLTDKTLELISGLTGLVS 425
F NL L++ +T AG K I K LT L+LS +C LI+G LVS
Sbjct: 925 KFANLERLDLSSNNKVTIAGAKFIGKACRRLTHLSLSSCGDCICNGIVDALITGQINLVS 984
Query: 426 LNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
N+S+ +ITS L+ L ++L+S+ L +C
Sbjct: 985 ANLSSCKKITS--LKALATCRSLQSVDLTNC 1013
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 106/387 (27%), Positives = 169/387 (43%), Gaps = 62/387 (16%)
Query: 18 RCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIH 76
R T +SL R CA++DL L G+ + L+S+ LSG +T
Sbjct: 642 RLQTGLSLVTERCCAIRDLSLCGCLGLKAPQFASLGQNARGLVSLKLSGCRQITPWAFTK 701
Query: 77 L-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
L + L+ LD ++C ++D ++ L + L L+ R ++ G+ + G L
Sbjct: 702 LFEGLKLLEILDISYCSLVTDQEIKLLSESATGLRCLNLRECKLVSDIGLTFLSQGCTEL 761
Query: 134 VKLDLERCT---RIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQI 187
V L+L R R+ L+ + +G L +LN+ C I+D+ + L S L+ + +
Sbjct: 762 VDLNLRRSELPFRVTDVALLQIGQGCRSLRALNLHGCELISDTGLSWLASWAKQLRHVNL 821
Query: 188 S-CSKVTDSGIAYL---------------------------KGLQKLTLLNLEGCPVTAA 219
+ C+K+T++G +L G KL LN G + +
Sbjct: 822 ANCTKITNAGARHLGDGCPNLISAVLTNVKRVSDVGLRCLANGCSKLETLNCSGLAMLSD 881
Query: 220 CLDS------LSALGS------LFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLGF-NEIT 265
+D L ALG+ L LN+ C L S SK +L+ L+L N++T
Sbjct: 882 GVDREFGLEGLQALGASSCSTTLKNLNIRGCTLISTLSMRAISKFANLERLDLSSNNKVT 941
Query: 266 DECLVHL-KGLTNLESLNLDSCGIGD---EGLVN--LTGLTNLESINLSFTGISDGSLRK 319
+ K L L+L SC GD G+V+ +TG NL S NLS + SL+
Sbjct: 942 IAGAKFIGKACRRLTHLSLSSC--GDCICNGIVDALITGQINLVSANLS-SCKKITSLKA 998
Query: 320 LAGLSSLKSLNL-DARQITDTGLAALT 345
LA SL+S++L + ITD + LT
Sbjct: 999 LATCRSLQSVDLTNCSGITDGAILQLT 1025
>gi|161333852|ref|NP_659469.3| F-box/LRR-repeat protein 13 isoform 1 [Homo sapiens]
gi|311033450|sp|Q8NEE6.3|FXL13_HUMAN RecName: Full=F-box/LRR-repeat protein 13; AltName: Full=F-box and
leucine-rich repeat protein 13
Length = 735
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 116/429 (27%), Positives = 195/429 (45%), Gaps = 70/429 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + P D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 247 LQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 306
Query: 92 IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG + A G+++L
Sbjct: 307 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDN 366
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK +E+C+RI H + L KL + + +TD+ K +
Sbjct: 367 CVKALVEKCSRITSLVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYP 426
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-----ACLDSLSALGSLFYLN 234
NL + ++ C +TDS + L L++LT+LNL C LD +++ + LN
Sbjct: 427 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRIGDMGLKQFLDGPASM-RIRELN 485
Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
L+ C +LSD K S + C NL L+L +C + +G
Sbjct: 486 LSNCVRLSDASVMKLS----------------ERC-------PNLNYLSLRNCEHLTAQG 522
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGL 350
+ + + +L SI+LS T IS+ L L+ LK L++ + +ITD G+ A S L
Sbjct: 523 IGYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLIL 582
Query: 351 THLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQN 406
HLD+ + ++++D L + NL SL I G +TD+ ++ + L +L++S
Sbjct: 583 EHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGC 642
Query: 407 CNLTDKTLE 415
LTD+ LE
Sbjct: 643 VLLTDQILE 651
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 10/188 (5%)
Query: 83 LQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
++ L+ + C+++SD + L NL LS R +TAQG+ + +LV +DL
Sbjct: 481 IRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGT 540
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIA 198
+ GL L KL+ L++ C ITD ++ S L L+ L +S CS+++D I
Sbjct: 541 DISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLI-LEHLDVSYCSQLSDMIIK 599
Query: 199 YLK-GLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIG--S 253
L LT L++ GCP +T + ++ LSA L L+++ C L D + +IG
Sbjct: 600 ALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGCVLLTDQILEDLQIGCKQ 659
Query: 254 LKVLNLGF 261
L++L + +
Sbjct: 660 LRILKMQY 667
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+DLSG+D+++ GL L L+ L + C +I+D G++ +F +++
Sbjct: 531 SLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQ-----------AFCKSS 579
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKP 175
I L LD+ C+++ ++ + + L SL+I C ITDS M+
Sbjct: 580 LI-------------LEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEM 626
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + L L IS C +TD + L+ G ++L +L ++ C
Sbjct: 627 LSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYC 668
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 128/284 (45%), Gaps = 21/284 (7%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV--LNLGFNEITD 266
LN GC + S+S +L LN++ C D + G V LNL IT+
Sbjct: 226 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITN 285
Query: 267 ECLVHL-KGLTNLESLNLDSC-GIGDEGLVNL---TGLTNLESINLS-FTGISDGSLRKL 320
+ L + NL++L+L C D+GL L G L ++LS T IS R +
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 321 A-GLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFGA-RITDSGAAYLRNFKNLRS 376
A + + L + D +TD + AL + +T L GA I+D L K LR
Sbjct: 346 ANSCTGIMHLTINDMPTLTDNCVKALVEKCSRITSLVFTGAPHISDCTFRALSACK-LRK 404
Query: 377 LEICGGG-LTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RI 433
+ G +TDA K I K+ +L+ + ++ +TD +L +S L L LN++N RI
Sbjct: 405 IRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRI 464
Query: 434 TSAGLRHL---KPLKNLRSLTLESC-KVTANDIKRLQSRDLPNL 473
GL+ +R L L +C +++ + +L R PNL
Sbjct: 465 GDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSER-CPNL 507
>gi|51850137|dbj|BAD42410.1| leucine-rich repeat protein [Ralstonia solanacearum]
gi|226237546|dbj|BAH47288.1| type III effector protein [Ralstonia solanacearum]
Length = 493
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 142/300 (47%), Gaps = 16/300 (5%)
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQ-----KLTLLNLEGCPVTAACLDSLSALGSLFY 232
GL +L L + KV +GI LT L++ G + A +L+A S+
Sbjct: 157 GLAHLSKLPLVRLKVRANGIHAEAARALAASTTLTALDIRGNGIGDAGAQALAANTSITS 216
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+ + + G + +L L+LGFN I DE L L T+L SL + SC IGD G
Sbjct: 217 LDASFNDIGAAGARALAGNTTLTSLDLGFNAIGDEGLQALATNTSLTSLTVGSCEIGDAG 276
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
L T L S++L+ I + LA + L SL+L I+D G AAL T LT
Sbjct: 277 AAALANNTALTSVDLTCNHIGEEGAEGLAANTVLTSLDLTRNSISDRGAAALAGNTALTS 336
Query: 353 L-----DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L D++G GA +L L SL+I + AG + + +S+T LN++ N
Sbjct: 337 LCVNFNDIYG-----RGARWLAENTTLASLDIGENRIEAAGAQALAANTSITWLNINDN- 390
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
++ D + ++ L SL S++ I +AG++ L L SL++ ++ +K L +
Sbjct: 391 HIGDAGAQALAAHPALTSLYASDNFIGTAGVQALAANTRLTSLSIWGNRIGDAGVKALAA 450
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 136/304 (44%), Gaps = 28/304 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++D+ G+ + D+G L +++ SLD +F I G L G + LTSL
Sbjct: 188 TTLTALDIRGNGIGDAGAQALAANTSITSLDASFN-DIGAAGARALAGNTTLTSLDLGF- 245
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
NAI +G++A A +L L + C G L L S+++ CN I + + L
Sbjct: 246 NAIGDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLT-CNHIGEEGAEGL 304
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T L SL ++ + ++D G A L G LT L C +N N
Sbjct: 305 AANTVLTSLDLTRNSISDRGAAALAGNTALTSL----C------------------VNFN 342
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ G ++ +L L++G N I L T++ LN++ IGD G L
Sbjct: 343 --DIYGRGARWLAENTTLASLDIGENRIEAAGAQALAANTSITWLNINDNHIGDAGAQAL 400
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L S+ S I ++ LA + L SL++ +I D G+ AL + T LT L +
Sbjct: 401 AAHPALTSLYASDNFIGTAGVQALAANTRLTSLSIWGNRIGDAGVKALAANTTLTKLTI- 459
Query: 357 GARI 360
G R+
Sbjct: 460 GKRV 463
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 128/272 (47%), Gaps = 2/272 (0%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L +L+I+ N I D+ + L+ T++ SL S + + +G L G LT L+L +
Sbjct: 190 LTALDIR-GNGIGDAGAQALAANTSITSLDASFNDIGAAGARALAGNTTLTSLDLGFNAI 248
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
L +L+ SL L + C++ D G + +L ++L N I +E L T
Sbjct: 249 GDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLTCNHIGEEGAEGLAANT 308
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L SL+L I D G L G T L S+ ++F I R LA ++L SL++ +I
Sbjct: 309 VLTSLDLTRNSISDRGAAALAGNTALTSLCVNFNDIYGRGARWLAENTTLASLDIGENRI 368
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
G AL + T +T L++ I D+GA L L SL + AGV+ + +
Sbjct: 369 EAAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYASDNFIGTAGVQALAANT 428
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
LT L++ N + D ++ ++ T L L +
Sbjct: 429 RLTSLSIWGN-RIGDAGVKALAANTTLTKLTI 459
>gi|356566445|ref|XP_003551442.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase
RCH1-like [Glycine max]
Length = 1122
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 98/360 (27%), Positives = 162/360 (45%), Gaps = 6/360 (1%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
+ +C +L+ LD + S G + L LSNL L NN I+ KA + L NL++
Sbjct: 310 EIGNCRSLKILDVSLN-SFSGGIPQSLGKLSNLEELMLSNNN-ISGSIPKALSNLTNLIQ 367
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L L+ ++ G + G + ++ W N + L G +L++L +S + +TDS
Sbjct: 368 LQLD-TNQLSGSIPPELGSLTKLTMFFAWQNKLEGGIPSTLEGCRSLEALDLSYNALTDS 426
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
L LQ LT L L ++ + SL L L ++S + ++ + SL
Sbjct: 427 LPPGLFKLQNLTKLLLISNDISGPIPPEIGKCSSLIRLRLVDNRISGEIPKEIGFLNSLN 486
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315
L+L N +T + + L+ LNL + + L+ LT L+ ++LS S
Sbjct: 487 FLDLSENHLTGSVPLEIGNCKELQMLNLSNNSLSGALPSYLSSLTRLDVLDLSMNNFSGE 546
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+ L+SL + L + ++L +GL LDL + + + L + L
Sbjct: 547 VPMSIGQLTSLLRVILSKNSFSGPIPSSLGQCSGLQLLDLSSNKFSGTIPPELLQIEALD 606
Query: 376 -SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
SL L+ I L+ L++L+LS N NL + L SGL LVSLN+S ++ T
Sbjct: 607 ISLNFSHNALSGVVPPEISSLNKLSVLDLSHN-NL-EGDLMAFSGLENLVSLNISFNKFT 664
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 157/385 (40%), Gaps = 19/385 (4%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
+ DC NL++LD F ++ L LSNL + N+ I NL
Sbjct: 165 EIGDCVNLKTLDI-FDNNLNGDLPVELGKLSNLEVIRAGGNSGIAGNIPDELGDCKNLSV 223
Query: 136 LDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSG----LTNLKSLQISCS 190
L L T+I G L +L L L++L+I + + ++ P G L NL + S
Sbjct: 224 LGLAD-TKISGSLPASLGKLSMLQTLSIY--STMLSGEIPPEIGNCSELVNLFLYENGLS 280
Query: 191 KVTDSGIAYLKGLQKLTLLN---LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
I L+ L+K+ L + G P + + SL L+++ S +
Sbjct: 281 GSLPREIGKLQKLEKMLLWQNSFVGGIP------EEIGNCRSLKILDVSLNSFSGGIPQS 334
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
K+ +L+ L L N I+ L LTNL L LD+ + L LT L
Sbjct: 335 LGKLSNLEELMLSNNNISGSIPKALSNLTNLIQLQLDTNQLSGSIPPELGSLTKLTMFFA 394
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
+ G L G SL++L+L +TD+ L L LT L L I+
Sbjct: 395 WQNKLEGGIPSTLEGCRSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPPE 454
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
+ +L L + ++ K I L+SL L+LS+N +LT I L LN
Sbjct: 455 IGKCSSLIRLRLVDNRISGEIPKEIGFLNSLNFLDLSEN-HLTGSVPLEIGNCKELQMLN 513
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTL 452
+SN+ ++ A +L L L L L
Sbjct: 514 LSNNSLSGALPSYLSSLTRLDVLDL 538
>gi|238008968|gb|ACR35519.1| unknown [Zea mays]
Length = 520
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 138/485 (28%), Positives = 213/485 (43%), Gaps = 100/485 (20%)
Query: 49 MDVIASQGSSLLSVDLSGSD----VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGL-EHL 102
M V+A L + + GS VTD GL + + NL SL I+D GL E
Sbjct: 31 MAVVAGSCGGLEKLSVRGSHPARGVTDQGLSAVARGSPNLSSLALWDVPLITDAGLVEIA 90
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
G L L R IT +G+ AFA G +LV L +E C+ + GL + + MKL++
Sbjct: 91 AGCPLLERLDISRCPLITDKGLAAFAQGCPDLVSLTIEACSSVGDEGLRAIGRSCMKLQA 150
Query: 160 LNIKWCNCITDSDMKPL--SGLTNLKSLQISCSKVTDSGIAYL----------------- 200
+NIK C + D + L S +L +++ +TD+ +A +
Sbjct: 151 VNIKNCPLVGDQGISSLVCSATASLAKIRLQGLNITDASLAVIGYYGKAITDLSLTRLAT 210
Query: 201 ------------KGLQKLTLLNLEGCP-VTAACLDSLSAL-GSLFYLNLNRC-QLSDDGC 245
GLQ L +++ CP VT L S++ SL L L +C +SD G
Sbjct: 211 VGERGFWVMANAAGLQNLRCMSVTSCPGVTDLALASIAKFCPSLKKLYLRKCGHVSDAGL 270
Query: 246 EKFSKIGSLKVL-NLGFNEITDECLVHLKGLTN----LESLNLDSCGIGDEGLVNLTGLT 300
+ F++ S KV NL E LV + N +L+L C +G + + ++ L
Sbjct: 271 KAFTE--SAKVFENLQLEECNRVTLVGILAFLNCSQKFRALSLVKC-MGIKDICSVPQLP 327
Query: 301 NLESINL----SFTGISDGSLRKLAGL-SSLKSLNLDA-RQITDTGLAAL--TSLTGLTH 352
S+ G ++ SL + + L+ ++L ++TD GL L +S +GL
Sbjct: 328 FCRSLRFLTIKDCPGFTNASLAVVGMICPQLEQVDLSGLGEVTDNGLLPLIQSSESGLIK 387
Query: 353 LDLFGAR-ITDSGAAYL--RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
+DL G + ITD + L R+ K+L+ SLE C +TDA +L +S++C
Sbjct: 388 VDLSGCKNITDVAVSSLVKRHGKSLKKVSLEGC-SKITDA-----------SLFTMSESC 435
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGL------RHLKPLKNLRSLTLESC-KVTAN 460
T L L++SN ++ G+ RHLK LR L+L C KVT
Sbjct: 436 -------------TELAELDLSNCMVSDYGVAMLASARHLK----LRVLSLSGCSKVTQK 478
Query: 461 DIKRL 465
+ L
Sbjct: 479 SVPFL 483
>gi|168700135|ref|ZP_02732412.1| hypothetical protein GobsU_11445 [Gemmata obscuriglobus UQM 2246]
Length = 120
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L +L GLT LDLF ++TD G L K L LE+ +TDAGVK + L++LT L+L
Sbjct: 4 LAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTTLDL 63
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+TD ++ +SGL L+ LN+ + +T AG++ L LK L L L +VT
Sbjct: 64 G-FTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVT 117
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L LKGL +L+ + K +TD +K LSGL L L+++ ++VTD+G+ L GL LT
Sbjct: 4 LAALKGLTQLDLFDTK----VTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALT 59
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L+L VT A + +LS L L LNL ++D G + + + L +L+L F +TD
Sbjct: 60 TLDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTD 118
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%)
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
++ + + L L+L ++TD + L GL L L L + D G+ L+GLT L +
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
++L FT ++D ++ L+GL L LNL +TD G+ AL L GLT LDL R+TD+G
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+++LA L L L+L ++TD G+ L+ L GLT L+L ++TD+G L L +
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L++ +TDAGVK + L L LNL +TD ++ ++GL GL L++S +R+T A
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTV-VTDAGVKALAGLKGLTILDLSFTRVTDA 119
Query: 437 G 437
G
Sbjct: 120 G 120
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
L L GLT L+ + T ++D +++L+GL L L L Q+TD G+ AL+ LT LT
Sbjct: 4 LAALKGLTQLDLFD---TKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
LDL ++TD+G L K+L L + +TDAGVK + L LT+L+LS
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLS 112
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
MK A L L +LDL G+ L GL L L + + +TD+ +K LSGLT L
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQ-VTDAGVKALSGLTALT 59
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L + +KVTD+G+ L GL+ L LNL VT A + +L+ L L L+L+ +++D
Sbjct: 60 TLDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDA 119
Query: 244 G 244
G
Sbjct: 120 G 120
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 24/142 (16%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
MK L+ L L L + +KVTD G+ L GL+ LT
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLT------------------------R 36
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L Q++D G + S + +L L+LGF ++TD + L GL +L LNL + D G
Sbjct: 37 LELTFTQVTDAGVKALSGLTALTTLDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAG 96
Query: 293 LVNLTGLTNLESINLSFTGISD 314
+ L GL L ++LSFT ++D
Sbjct: 97 VKALAGLKGLTILDLSFTRVTD 118
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L LKGLT L+ + +G + L L GLT LE L+FT ++D ++ L+GL++L +
Sbjct: 4 LAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLE---LTFTQVTDAGVKALSGLTALTT 60
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L+L ++TD G+ AL+ L L L+L +TD+G L K L L++ +TDAG
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L L LD F +++D G++ L GL LT L +T G+KA +GL L
Sbjct: 3 ELAALKGLTQLDL-FDTKVTDVGVKELSGLKGLTRLELTFTQ-VTDAGVKALSGLTALTT 60
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LDL G+ L GL L LN+ +TD+ +K L+GL L L +S ++VTD+
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNL-GVTVVTDAGVKALAGLKGLTILDLSFTRVTDA 119
Query: 196 G 196
G
Sbjct: 120 G 120
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++L+ + VTD+G+ L + L +LD F +++D G++ L GL +L L+
Sbjct: 34 LTRLELTFTQVTDAGVKALSGLTALTTLDLGFT-KVTDAGVKALSGLKHLIQLNLGV-TV 91
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI 144
+T G+KA AGL L LDL TR+
Sbjct: 92 VTDAGVKALAGLKGLTILDLS-FTRV 116
>gi|297171918|gb|ADI22905.1| hypothetical protein [uncultured Rhizobium sp. HF0500_35F13]
Length = 307
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 2/165 (1%)
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A + G++ +T+ +T L+ L LG++ YL+L+ + DDG +K+ L+VL
Sbjct: 41 AQVSGIRSVTV-RFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVL 99
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSL 317
L EITD L L++L L +GD + L T L ++++ ++D L
Sbjct: 100 VLSGTEITDAGFSQLSNLSDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGL 158
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
L+G+ +LK L L ITD GL L S+T L L L +ITD
Sbjct: 159 SHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKITD 203
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Query: 157 LESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+ S+ +++ N +T D++PL L + L +S + V D G+ ++ L+ L +L L G
Sbjct: 46 IRSVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTE 105
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T A LS L L L + + D + L L++ ++TD L HL G+
Sbjct: 106 ITDAGFSQLSNLSDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGLSHLSGM 164
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
NL+ L L I D+GL +L +T L+ + L+ T I+D
Sbjct: 165 KNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKITD 203
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
L L L + +LDL + D G ++ + L+ L + G +TDAG + +LS L
Sbjct: 63 LEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDAGFSQLSNLSDLNQ 122
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L S+ + D T+ ++ T L L+++ ++T +GL HL +KNL+ LTL +T
Sbjct: 123 LTASEL--MGDGTMAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTAITDK 180
Query: 461 DIKRLQS 467
++ LQS
Sbjct: 181 GLEHLQS 187
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 27/209 (12%)
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL 323
+T + L L L + L+L +GD+G+V++ L L+ + LS T I+D +L+ L
Sbjct: 58 LTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDAGFSQLSNL 117
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
S L L + + D +AAL S T L LD+ GG
Sbjct: 118 SDLNQLTA-SELMGDGTMAALASATKLNFLDM------------------------TGGQ 152
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
+TD+G+ H+ + +L L LS+ +TDK LE + +T L L ++N++IT GL L+
Sbjct: 153 VTDSGLSHLSGMKNLKRLTLSRTA-ITDKGLEHLQSITVLQDLQLNNTKITDEGLLLLEG 211
Query: 444 LKNLRSLTLESCKVTANDIKRLQSRDLPN 472
L NL L + T N + +LQ+ LP+
Sbjct: 212 LSNLNLLAITDTGTTLNGVTKLQAA-LPD 239
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 299 LTNLESINLSFT--GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
++ + S+ + FT ++ L L L ++ L+L + D G+ + L GL L L
Sbjct: 43 VSGIRSVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLS 102
Query: 357 GARITDSGAAYLRNFKNLRSL---EICGGGLTDAGVKHIKDLSSLTLLNL--SQNCNLTD 411
G ITD+G + L N +L L E+ G G A L+S T LN +TD
Sbjct: 103 GTEITDAGFSQLSNLSDLNQLTASELMGDGTMAA-------LASATKLNFLDMTGGQVTD 155
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L +SG+ L L +S + IT GL HL+ + L+ L L + K+T
Sbjct: 156 SGLSHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKIT 202
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLS + V D G++H+ LQ L + +I+D G L LS+L L+ +
Sbjct: 75 LDLSDTSVGDDGMVHINKLEGLQVLVLS-GTEITDAGFSQLSNLSDLNQLTASE---LMG 130
Query: 122 QG-MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G M A A L LD+ GL +L G+ L+ L + ITD ++ L +T
Sbjct: 131 DGTMAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQSIT 189
Query: 181 NLKSLQISCSKVTD 194
L+ LQ++ +K+TD
Sbjct: 190 VLQDLQLNNTKITD 203
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D M +AS + L +D++G VTDSGL HL NL+ L + I+D GLEHL+
Sbjct: 129 MGDGTMAALAS-ATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQ 186
Query: 104 GLSNLTSLSFRRNNAIT 120
++ L L N IT
Sbjct: 187 SITVLQDLQL-NNTKIT 202
>gi|290985732|ref|XP_002675579.1| predicted protein [Naegleria gruberi]
gi|284089176|gb|EFC42835.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 9/247 (3%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+L+SLN+ +C + +S TNL+ L I+ S ++ ++ +LT LNL G
Sbjct: 94 FQRLKSLNLFFC---LKECFEHISKFTNLEMLSITQSDFENA--LWIGNFTQLTYLNLNG 148
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
V + +++ S+ LNL+ L DD C S++ +LK+L + N+I + L
Sbjct: 149 NFVGRSGCENIRNCQSIMELNLSNNDLQDDACVYLSELKNLKILLVENNDIGENGCESLS 208
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L LN+ I D+G N+ L+NL ++ S I GS+ L L+ L L L
Sbjct: 209 RIETLTKLNISRNHIHDDGFSNICKLSNLTHLHASCCLI--GSVSNLTNLNKLIELELSG 266
Query: 334 RQITDTGLAALTSLTGLTHLDLFGA--RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
I + G+ ++ + L L+L + I+D YL NL L++ L +
Sbjct: 267 NLIDNEGVKVISEMQNLRILNLVNSYMHISDDAVHYLTKLVNLELLDLSENSLNIEDIDC 326
Query: 392 IKDLSSL 398
+K L L
Sbjct: 327 LKSLPRL 333
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 102/202 (50%), Gaps = 7/202 (3%)
Query: 210 NLEGCPVTAACLDSLSALGS---LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
NLE +T + ++ +G+ L YLNLN + GCE S+ LNL N++ D
Sbjct: 118 NLEMLSITQSDFENALWIGNFTQLTYLNLNGNFVGRSGCENIRNCQSIMELNLSNNDLQD 177
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ V+L L NL+ L +++ IG+ G +L+ + L +N+S I D + LS+L
Sbjct: 178 DACVYLSELKNLKILLVENNDIGENGCESLSRIETLTKLNISRNHIHDDGFSNICKLSNL 237
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG--GL 384
L+ I ++ LT+L L L+L G I + G + +NLR L + +
Sbjct: 238 THLHASCCLI--GSVSNLTNLNKLIELELSGNLIDNEGVKVISEMQNLRILNLVNSYMHI 295
Query: 385 TDAGVKHIKDLSSLTLLNLSQN 406
+D V ++ L +L LL+LS+N
Sbjct: 296 SDDAVHYLTKLVNLELLDLSEN 317
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 111/267 (41%), Gaps = 35/267 (13%)
Query: 19 CLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
CL E + L+ L + Q N W+ + L ++L+G+ V SG +++
Sbjct: 105 CLKECFEHISKFTNLEMLSITQSDFENALWI----GNFTQLTYLNLNGNFVGRSGCENIR 160
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+C ++ L+ + + D +L L NL L NN I G ++ + + L KL++
Sbjct: 161 NCQSIMELNLSN-NDLQDDACVYLSELKNLKIL-LVENNDIGENGCESLSRIETLTKLNI 218
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
R N I D + L+NL L SC + ++
Sbjct: 219 SR-------------------------NHIHDDGFSNICKLSNLTHLHASCCLI--GSVS 251
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFSKIGSLKV 256
L L KL L L G + + +S + +L LNL + +SDD +K+ +L++
Sbjct: 252 NLTNLNKLIELELSGNLIDNEGVKVISEMQNLRILNLVNSYMHISDDAVHYLTKLVNLEL 311
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNL 283
L+L N + E + LK L L + +
Sbjct: 312 LDLSENSLNIEDIDCLKSLPRLREVKI 338
>gi|301607081|ref|XP_002933148.1| PREDICTED: f-box/LRR-repeat protein 13-like [Xenopus (Silurana)
tropicalis]
Length = 555
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 179/421 (42%), Gaps = 77/421 (18%)
Query: 24 SLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC-S 81
+ +A +C LQDL L + +ND+ + +I +LL +++S +DVT++ L + C
Sbjct: 102 TFKAIGECKNLQDLNLSECIHLNDESIRIICEGCPALLYLNISHTDVTNATLRIVSRCLL 161
Query: 82 NLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLD 137
NLQ L +C + +D GL++L +G L L I+ G AG +L +L
Sbjct: 162 NLQFLSLAYCRKFTDKGLQYLGSGKGCPKLIYLDLSGCTQISVDGFTFLAAGCNSLQQLK 221
Query: 138 ---------------LERCTRI---------HGGLVNLKGLM---KLESLNIKWCNCITD 170
LE+C I H V K L KL + I+ N ITD
Sbjct: 222 INDMFTLTDKCITALLEKCQNILSISLLGSPHLSDVAFKVLAQGRKLAKIRIEGNNRITD 281
Query: 171 SDMKPLSGL-TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-----PVTAACLDS 223
S +K + NL + ++ C K+TD + + L+ +T+LN+ C P L+
Sbjct: 282 SSIKAICKFCANLNHIYVADCQKITDVSLKAISVLKNITILNVADCIRISDPGVRQVLEG 341
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
S + LNL C ++V +L I +C NL L+L
Sbjct: 342 PSG-TKIRELNLTNC---------------IRVSDLSLLRIAQKC-------HNLTYLSL 378
Query: 284 DSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD--------AR 334
C + D G L + +L SI+LS T I+D L L S++K L++
Sbjct: 379 RYCENLTDSGFELLGNMASLISIDLSGTNITDQGLSALGAHSTIKELSVSECFGISDIGI 438
Query: 335 QITDTGLAALTSLTGLTH-LDLFG-ARITDSGAAYLRN-FKNLRSLEI--CGGGLTDAGV 389
Q+TD + L+ + H LD+ G ++D LR K L L+I C A V
Sbjct: 439 QVTDLSIQYLSGVCSYLHVLDISGCVNLSDRTLKCLRKGCKQLHILKILYCKSITKAAAV 498
Query: 390 K 390
K
Sbjct: 499 K 499
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 169/370 (45%), Gaps = 54/370 (14%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCI 168
L+FR +++ KA NL L+L C ++ + + +G L LNI + +
Sbjct: 90 LNFRSCSSLHWPTFKAIGECKNLQDLNLSECIHLNDESIRIICEGCPALLYLNISHTD-V 148
Query: 169 TDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNLEGCPVTAACLDS 223
T++ ++ +S L NL+ L ++ C K TD G+ YL KG KL L+L GC T +D
Sbjct: 149 TNATLRIVSRCLLNLQFLSLAYCRKFTDKGLQYLGSGKGCPKLIYLDLSGC--TQISVDG 206
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLN 282
+ L + GC ++ +N F +TD+C+ L + N+ S++
Sbjct: 207 FTFLAA--------------GCNSLQQLK----INDMFT-LTDKCITALLEKCQNILSIS 247
Query: 283 L-DSCGIGDEGLVNLTGLTNLESINLSFTG-ISDGSLRKLAGL-SSLKSLNL-DARQITD 338
L S + D L L I + I+D S++ + ++L + + D ++ITD
Sbjct: 248 LLGSPHLSDVAFKVLAQGRKLAKIRIEGNNRITDSSIKAICKFCANLNHIYVADCQKITD 307
Query: 339 TGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
L A++ L +T L++ RI+D G + + G + + + + +S
Sbjct: 308 VSLKAISVLKNITILNVADCIRISDPGVRQVLEGPS-------GTKIRELNLTNCIRVSD 360
Query: 398 LTLLNLSQNC------------NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
L+LL ++Q C NLTD EL+ + L+S+++S + IT GL L
Sbjct: 361 LSLLRIAQKCHNLTYLSLRYCENLTDSGFELLGNMASLISIDLSGTNITDQGLSALGAHS 420
Query: 446 NLRSLTLESC 455
++ L++ C
Sbjct: 421 TIKELSVSEC 430
>gi|218281153|ref|ZP_03487679.1| hypothetical protein EUBIFOR_00240 [Eubacterium biforme DSM 3989]
gi|218217599|gb|EEC91137.1| hypothetical protein EUBIFOR_00240 [Eubacterium biforme DSM 3989]
Length = 480
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 121/436 (27%), Positives = 188/436 (43%), Gaps = 96/436 (22%)
Query: 92 IQISDGGLEHLRGL---SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
+++ D + L GL NL +L+ N Q + L NLV LD+ R L
Sbjct: 34 LEVQDHEIATLEGLQYAENLETLNASNN---KLQTLDPIRDLHNLVCLDVSRNQL--RDL 88
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL-- 206
L G +L+ LN+ N T D+ ++ + +L+ L +S +KV + YL+ +KL
Sbjct: 89 QALHGFRQLKKLNVSRNNLYT-MDISSVAAMIDLEVLNLSKAKV--DSLIYLEHCKKLEE 145
Query: 207 TLLNLEGCPVTAACL-------------------DSLSALGSLFYLNLNRCQLSD----- 242
+N E P + A L + L+ L ++ L+LN +SD
Sbjct: 146 VHINTENGPFSYAILGVLKKLKKLDMGGMRLFNIEDLTYLSNVEELDLNTNLMSDLSPLL 205
Query: 243 ----------DGCEKFS------KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
C + +LK LN+ +NE + + LK L +LESL+++
Sbjct: 206 SMKNLKKLNVSNCPYLKDYSVLKEFSNLKSLNISYNE--PDHFMFLKELNHLESLSMEQT 263
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN-LDARQITDTGLAALT 345
G D L+N L +L+ +N +S L+ L ++++ L LDA+ T + L
Sbjct: 264 GFKDMSLLN--SLGDLKELN-----VSKNRLKNLEKFTNVEHLETLDAKFCQLTEIHFLK 316
Query: 346 SLTGLTHLDLFGARITD-------SGAAYL---RN-------FKNLRSLEICGGGLTDAG 388
+ L HL+LF RI D YL RN K+++ LEI L +
Sbjct: 317 NAHQLKHLNLFTNRIKDIRILKDAKEMVYLNVGRNDIKDITCLKDMKQLEII--SLENNN 374
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTL--ELISGLTGLVSLN-VSNSRITSAGLRHLKP-- 443
VK +K LS LT NL D L +I L L +L +S R+ + L P
Sbjct: 375 VKDLKPLSELT--------NLCDVDLYNNVIEDLMPLENLEFISYLRLDHNAITDLTPLS 426
Query: 444 -LKNLRSLTLESCKVT 458
LK LRSLTL++ +T
Sbjct: 427 KLKYLRSLTLKANYIT 442
>gi|354476331|ref|XP_003500378.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cricetulus griseus]
Length = 340
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 144/293 (49%), Gaps = 39/293 (13%)
Query: 189 CSKVTDSGIA----YLKGLQKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LS 241
C ++TDS + YLKGL+ +L L GC L L L LNL C+ LS
Sbjct: 70 CKQITDSSLGRIAQYLKGLE---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 126
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GL 299
D G IG L + E G LE L L C + D L +++ GL
Sbjct: 127 DVG------IGHLAGMTRSAAE----------GCLGLEQLTLQDCQKLTDLSLKHISRGL 170
Query: 300 TNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLA--ALTSLTGLTHLDL- 355
T L +NLSF G ISD L L+ + SL+ D I+DTG+ A+ SL L+ LD+
Sbjct: 171 TGLRLLNLSFCGGISDAGLLHLSHMGSLRLPTCD--NISDTGIMHLAMGSLR-LSGLDVS 227
Query: 356 FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKT 413
F ++ D AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK
Sbjct: 228 FCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKG 287
Query: 414 LELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
LELI+ L+ L +++ +RIT GL + L L+ L L ++T ++ R
Sbjct: 288 LELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 340
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 133/254 (52%), Gaps = 46/254 (18%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS-CSKVTDSGIAYL-KG 202
GL +L+SLN++ C ++D + L+G+T L+ L + C K+TD + ++ +G
Sbjct: 110 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRG 169
Query: 203 LQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LN 258
L L LLNL C ++ A L LS +GS L L C +SD G + +GSL++ L+
Sbjct: 170 LTGLRLLNLSFCGGISDAGLLHLSHMGS---LRLPTCDNISDTGIMHLA-MGSLRLSGLD 225
Query: 259 LGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316
+ F +++ D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 226 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM-------------------- 265
Query: 317 LRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKN 373
+R++ G L++LN+ +ITD GL + L+ LT +DL+G RIT G +
Sbjct: 266 VRQMHG---LRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 322
Query: 374 LRSLEICGGGLTDA 387
L+ L + +TD+
Sbjct: 323 LKVLNLGLWQMTDS 336
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 139/286 (48%), Gaps = 38/286 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 73 ITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGH 132
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL------KGLM 155
L G++ A G + L +L L+ C + L +L +GL
Sbjct: 133 LAGMTR-----------------SAAEGCLGLEQLTLQDCQK----LTDLSLKHISRGLT 171
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
L LN+ +C I+D+ + LS + +L+ +C ++D+GI +L G +L+ L++ C
Sbjct: 172 GLRLLNLSFCGGISDAGLLHLSHMGSLR--LPTCDNISDTGIMHLAMGSLRLSGLDVSFC 229
Query: 215 -PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLV 270
V L ++ L L L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 230 DKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLE 289
Query: 271 HL-KGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESINLSFTGISD 314
+ + L+ L ++L C I GL +T L L+ +NL ++D
Sbjct: 290 LIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTD 335
>gi|343033588|gb|AEL79537.1| esag8 [Trypanosoma brucei TREU927]
Length = 630
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 183/420 (43%), Gaps = 62/420 (14%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+ L ++VTD L + L+ LD + C +I+D L + G+ +L LS
Sbjct: 231 QLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIAGVRSLEKLSLSGCW 288
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T +G++ NL +LD+ C + G V LK L+ L+ L++ NC D+ L
Sbjct: 289 NVT-KGLEELCKFSNLRELDISGCL-VLGSAVVLKNLINLKVLSVS--NCKNFKDLNGLE 344
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L NL+ L +S C V S +A++ L L LN+ GC + C D L L +L L L
Sbjct: 345 RLVNLEKLNLSGCHGV--SSLAFVANLSNLKELNISGCE-SLVCFDGLQDLNNLEVLYLR 401
Query: 237 RCQLSDDGCEKFSKIGSLKVLNL-------GFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ F+ +G++K L+ G IT L L+ L LE L+L+ CG
Sbjct: 402 DVK-------SFTNVGAIKNLSKMRELDLSGCERITS--LSGLETLKGLEELSLEGCG-- 450
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN----LDARQITDTG----- 340
+++ + +L + + + G+L L+GL L L R+ T+ G
Sbjct: 451 --EIMSFDPIWSLYHLRVLYVS-ECGNLEDLSGLQCLTGLEEMYLHGCRKCTNFGPIWNL 507
Query: 341 ----------------LAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-G 382
L+ L LTGL L L G IT G + N +NL+ L C
Sbjct: 508 RNVCVLELSCCENLDDLSGLQCLTGLEELYLIGCEEITTIGV--VGNLRNLKCLSTCWCA 565
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L + G ++ L +L L+LS C L+ + L L SR+ L+ LK
Sbjct: 566 NLKELG--GLERLVNLEKLDLSGCCGLSSSVFMELMSLPKLQWFYGFGSRVPDIVLKELK 623
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 128/441 (29%), Positives = 201/441 (45%), Gaps = 73/441 (16%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN--------- 116
GS++ D L L+D L+ LD + C + L + L NL L +R
Sbjct: 121 GSELQD--LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSS 178
Query: 117 ----------NAITAQGMKAFAGLINLVKLD---LERCTRIHGGLVNLKGLMKLESLNIK 163
++G+ GL L L+ L+ C I G + L +L SL++
Sbjct: 179 IGLLKFLVHLEVDGSRGVTDITGLCRLKTLEALSLDNCINITKGFDKICALPQLTSLSLC 238
Query: 164 WCNCITDSDMKPLSGLTNLKSLQI-SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACL 221
N +TD D++ + LK L I SC ++TD + IA ++ L+KL+ L GC L
Sbjct: 239 QTN-VTDKDLRCIHPDGKLKVLDISSCHEITDLTAIAGVRSLEKLS---LSGCWNVTKGL 294
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGLTN 277
+ L +L L+++ C + + +LKVL++ F ++ L+ L N
Sbjct: 295 EELCKFSNLRELDISGCLVLGSAV-VLKNLINLKVLSVSNCKNFKDLNG-----LERLVN 348
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSLN 330
LE LNL C G L + L+NL+ +N+S F G+ D L++L+ L
Sbjct: 349 LEKLNLSGCH-GVSSLAFVANLSNLKELNISGCESLVCFDGLQD--------LNNLEVLY 399
Query: 331 L-DARQITDTGLAALTSLTGLTHLDLFGA-RITD-SGAAYLRNFKNLRSLEICGGGLTDA 387
L D + T+ G A+ +L+ + LDL G RIT SG L+ + L SLE CG ++
Sbjct: 400 LRDVKSFTNVG--AIKNLSKMRELDLSGCERITSLSGLETLKGLEEL-SLEGCGEIMS-- 454
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
I L L +L +S+ NL D L + LTGL + + R + + P+ NL
Sbjct: 455 -FDPIWSLYHLRVLYVSECGNLED--LSGLQCLTGLEEMYLHGCRKCT----NFGPIWNL 507
Query: 448 RSL-TLE-SCKVTANDIKRLQ 466
R++ LE SC +D+ LQ
Sbjct: 508 RNVCVLELSCCENLDDLSGLQ 528
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 14/217 (6%)
Query: 252 GSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLTNLESINL 307
G K+LNL +E+ D L L+ L LE L+L C + E +V LT L NL + +
Sbjct: 110 GRWKILNLSGCGSELQD--LTALRDLEALEDLDLSECANLELRELMVVLT-LRNLRKLRM 166
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLD-ARQITD-TGLAALTSLTGLTHLDLFGARITDSGA 365
T ++D + L L L +D +R +TD TGL L +L L+ L G
Sbjct: 167 KRTMVNDMWCSSIGLLKFLVHLEVDGSRGVTDITGLCRLKTLEALS---LDNCINITKGF 223
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
+ L SL +C +TD ++ I L +L++S +TD L I+G+ L
Sbjct: 224 DKICALPQLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIAGVRSLEK 281
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
L++S + GL L NLR L + C V + +
Sbjct: 282 LSLSGCWNVTKGLEELCKFSNLRELDISGCLVLGSAV 318
>gi|374293090|ref|YP_005040125.1| hypothetical protein AZOLI_2723 [Azospirillum lipoferum 4B]
gi|357425029|emb|CBS87910.1| Conserved protein of unknown function; Leucine-rich repeat domain
[Azospirillum lipoferum 4B]
Length = 1026
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 148/307 (48%), Gaps = 37/307 (12%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKL 206
L L GL L+ L+ C+ + SD+ PLSGL+ L+ L S + V+D ++ L GLQ+L
Sbjct: 55 LSPLSGLSDLQQLS---CSSTSVSDLSPLSGLSGLQQLDCSSTSVSDLFPLSGLSGLQQL 111
Query: 207 TLLNLEGCPVTAAC-LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
+ C T+ L LS L L L+ + +SD S + L+ L+ ++
Sbjct: 112 S------CSSTSVSDLFPLSGLSGLQELSCSGTSVSD--LSPLSGLNGLQQLDCSLTSVS 163
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
D L L GL+ L+ L+ + D L L+GL+ L+ ++ S T +SD L L+GLS
Sbjct: 164 D--LSPLSGLSGLQELSCSGTSVSD--LSPLSGLSGLQELSCSGTSVSD--LSPLSGLSG 217
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L+ L ++D L+ L+ L+GL L G + D + L L+ L C
Sbjct: 218 LQQLYCSGTSVSD--LSPLSGLSGLQQLSCSGTSVND--LSPLSGLSGLQQL-YC----- 267
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL------NVSNSRITSAGLR 439
V + DLS L+ L+ Q + +D ++ + L+GL SL NV I +AG+
Sbjct: 268 --SVTSVSDLSPLSGLSGLQELSCSDTSVSDLFPLSGLSSLQELYLYNVEIPGIPTAGVL 325
Query: 440 HLKPLKN 446
+P N
Sbjct: 326 SQEPDDN 332
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 107/339 (31%), Positives = 165/339 (48%), Gaps = 40/339 (11%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL ++ SG+ V+D L L LQ LD C S L L GLS+L LS +
Sbjct: 19 SLQQLNCSGTSVSD--LSPLNGLRGLQQLD---CSLTSVSDLSPLSGLSDLQQLSC---S 70
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ + + +GL L +LD C+ L L GL L+ L+ C+ + SD+ PL
Sbjct: 71 STSVSDLSPLSGLSGLQQLD---CSSTSVSDLFPLSGLSGLQQLS---CSSTSVSDLFPL 124
Query: 177 SGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLN 234
SGL+ L+ L S + V+D S ++ L GLQ+L C +T+ L LS L L L+
Sbjct: 125 SGLSGLQELSCSGTSVSDLSPLSGLNGLQQLD------CSLTSVSDLSPLSGLSGLQELS 178
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ +SD S + L+ L+ ++D L L GL+ L+ L + D L
Sbjct: 179 CSGTSVSD--LSPLSGLSGLQELSCSGTSVSD--LSPLSGLSGLQQLYCSGTSVSD--LS 232
Query: 295 NLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+GL+ L+ ++ S T ++D L L+GLS L+ L ++D L+ L+ L+GL L
Sbjct: 233 PLSGLSGLQQLSCSGTSVND--LSPLSGLSGLQQLYCSVTSVSD--LSPLSGLSGLQELS 288
Query: 355 LFGARITD----SGAAYLRNFKNLRSLEICGGGLTDAGV 389
++D SG + L+ L ++EI G+ AGV
Sbjct: 289 CSDTSVSDLFPLSGLSSLQELY-LYNVEI--PGIPTAGV 324
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 133/284 (46%), Gaps = 25/284 (8%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS S + S L L S LQ LD C S L L GLS L LS ++ +
Sbjct: 67 LSCSSTSVSDLSPLSGLSGLQQLD---CSSTSVSDLFPLSGLSGLQQLSC---SSTSVSD 120
Query: 124 MKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ +GL L +L C+ L L GL L+ L+ C+ + SD+ PLSGL+ L
Sbjct: 121 LFPLSGLSGLQELS---CSGTSVSDLSPLSGLNGLQQLD---CSLTSVSDLSPLSGLSGL 174
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
+ ++SCS + S ++ L GL L L+ G V+ L LS L L L + +SD
Sbjct: 175 Q--ELSCSGTSVSDLSPLSGLSGLQELSCSGTSVSD--LSPLSGLSGLQQLYCSGTSVSD 230
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNL 302
S + L+ L+ + D L L GL+ L+ L + D L L+GL+ L
Sbjct: 231 --LSPLSGLSGLQQLSCSGTSVND--LSPLSGLSGLQQLYCSVTSVSD--LSPLSGLSGL 284
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
+ ++ S T +SD L L+GLSSL+ L L +I A + S
Sbjct: 285 QELSCSDTSVSD--LFPLSGLSSLQELYLYNVEIPGIPTAGVLS 326
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 81/182 (44%), Gaps = 26/182 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + SG+ V+D L L S LQ L C S L L GLS L L
Sbjct: 172 SGLQELSCSGTSVSD--LSPLSGLSGLQELS---CSGTSVSDLSPLSGLSGLQQLYC--- 223
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKP 175
+ + + +GL L +L C+ G VN L L L L +C+ + SD+ P
Sbjct: 224 SGTSVSDLSPLSGLSGLQQLS---CS---GTSVNDLSPLSGLSGLQQLYCSVTSVSDLSP 277
Query: 176 LSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLE--GCPVTAA--------CLDSL 224
LSGL+ L+ L S + V+D ++ L LQ+L L N+E G P CLD L
Sbjct: 278 LSGLSGLQELSCSDTSVSDLFPLSGLSSLQELYLYNVEIPGIPTAGVLSQEPDDNCLDRL 337
Query: 225 SA 226
A
Sbjct: 338 RA 339
>gi|34785062|gb|AAH20572.2| FBXL13 protein, partial [Homo sapiens]
Length = 569
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 116/429 (27%), Positives = 195/429 (45%), Gaps = 70/429 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + P D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 81 LQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 140
Query: 92 IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG + A G+++L
Sbjct: 141 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDN 200
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK +E+C+RI H + L KL + + +TD+ K +
Sbjct: 201 CVKALVEKCSRITSLVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYP 260
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-----ACLDSLSALGSLFYLN 234
NL + ++ C +TDS + L L++LT+LNL C LD +++ + LN
Sbjct: 261 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRIGDMGLKQFLDGPASM-RIRELN 319
Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
L+ C +LSD K S + C NL L+L +C + +G
Sbjct: 320 LSNCVRLSDASVMKLS----------------ERC-------PNLNYLSLRNCEHLTAQG 356
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGL 350
+ + + +L SI+LS T IS+ L L+ LK L++ + +ITD G+ A S L
Sbjct: 357 IGYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLIL 416
Query: 351 THLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQN 406
HLD+ + ++++D L + NL SL I G +TD+ ++ + L +L++S
Sbjct: 417 EHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGC 476
Query: 407 CNLTDKTLE 415
LTD+ LE
Sbjct: 477 VLLTDQILE 485
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 10/188 (5%)
Query: 83 LQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
++ L+ + C+++SD + L NL LS R +TAQG+ + +LV +DL
Sbjct: 315 IRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGT 374
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIA 198
+ GL L KL+ L++ C ITD ++ S L L+ L +S CS+++D I
Sbjct: 375 DISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLI-LEHLDVSYCSQLSDMIIK 433
Query: 199 YLK-GLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIG--S 253
L LT L++ GCP +T + ++ LSA L L+++ C L D + +IG
Sbjct: 434 ALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGCVLLTDQILEDLQIGCKQ 493
Query: 254 LKVLNLGF 261
L++L + +
Sbjct: 494 LRILKMQY 501
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+DLSG+D+++ GL L L+ L + C +I+D G++ +F +++
Sbjct: 365 SLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQ-----------AFCKSS 413
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKP 175
I L LD+ C+++ ++ + + L SL+I C ITDS M+
Sbjct: 414 LI-------------LEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEM 460
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + L L IS C +TD + L+ G ++L +L ++ C
Sbjct: 461 LSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYC 502
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 128/284 (45%), Gaps = 21/284 (7%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV--LNLGFNEITD 266
LN GC + S+S +L LN++ C D + G V LNL IT+
Sbjct: 60 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITN 119
Query: 267 ECLVHL-KGLTNLESLNLDSC-GIGDEGLVNL---TGLTNLESINLS-FTGISDGSLRKL 320
+ L + NL++L+L C D+GL L G L ++LS T IS R +
Sbjct: 120 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 179
Query: 321 A-GLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFGA-RITDSGAAYLRNFKNLRS 376
A + + L + D +TD + AL + +T L GA I+D L K LR
Sbjct: 180 ANSCTGIMHLTINDMPTLTDNCVKALVEKCSRITSLVFTGAPHISDCTFRALSACK-LRK 238
Query: 377 LEICGGG-LTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RI 433
+ G +TDA K I K+ +L+ + ++ +TD +L +S L L LN++N RI
Sbjct: 239 IRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRI 298
Query: 434 TSAGLRHL---KPLKNLRSLTLESC-KVTANDIKRLQSRDLPNL 473
GL+ +R L L +C +++ + +L R PNL
Sbjct: 299 GDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSER-CPNL 341
>gi|189094641|emb|CAQ57303.1| expression site-associated gene 8 (ESAG8) protein [Trypanosoma
brucei brucei]
Length = 630
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 195/426 (45%), Gaps = 73/426 (17%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN--------- 116
GS++ D L L+D L+ LD + C + L + L NL L +R
Sbjct: 121 GSELQD--LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSS 178
Query: 117 ----------NAITAQGMKAFAGLINLVKLD---LERCTRIHGGLVNLKGLMKLESLNIK 163
++G+ GL L L+ L+ C I G + L +L SL++
Sbjct: 179 IGLLKFLVHLEVDGSRGVTDITGLCRLKTLEALSLDSCINITKGFDKICALPQLTSLSLC 238
Query: 164 WCNCITDSDMKPLSGLTNLKSLQI-SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACL 221
N +TD D++ + LK L I SC ++TD + IA ++ L+KL+ L GC L
Sbjct: 239 QTN-VTDKDLRCIHPDGKLKVLDISSCHEITDLTAIAGVRSLEKLS---LSGCWNVTKGL 294
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGLTN 277
+ L SL L+++ C + + +LKVL++ F ++ L+ L N
Sbjct: 295 EELCKFFSLRELDISGCPVLGSAV-VLRNLINLKVLSVSNCKNFKDLNG-----LERLVN 348
Query: 278 LESLNLDSC-GIGDEGLVNLTGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSL 329
LE LNL C G+ G V L+NL+ +++S F G+ D L++L+ L
Sbjct: 349 LEKLNLSGCHGVSSLGFV--ANLSNLKELDISGCESLVCFDGLQD--------LNNLEVL 398
Query: 330 NL-DARQITDTGLAALTSLTGLTHLDLFGA-RITD-SGAAYLRNFKNLRSLEICGGGLTD 386
L D + T+ G A+ +L+ + LDL G RIT SG L+ + L SLE CG ++
Sbjct: 399 YLRDVKSFTNVG--AIKNLSKMRELDLSGCERITSLSGLETLKRLEEL-SLEGCGEIMS- 454
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
I L L +L +S+ NL D L + G+TGL L + R + + P+ N
Sbjct: 455 --FDPIWSLHHLRVLYVSECGNLED--LSGLEGITGLEELYLHGCRKCT----NFGPIWN 506
Query: 447 LRSLTL 452
LR++ +
Sbjct: 507 LRNVCV 512
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 184/420 (43%), Gaps = 62/420 (14%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+ L ++VTD L + L+ LD + C +I+D L + G+ +L LS
Sbjct: 231 QLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIAGVRSLEKLSLSGCW 288
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T +G++ +L +LD+ C + G V L+ L+ L+ L++ NC D+ L
Sbjct: 289 NVT-KGLEELCKFFSLRELDISGCP-VLGSAVVLRNLINLKVLSVS--NCKNFKDLNGLE 344
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L NL+ L +S C V S + ++ L L L++ GC + C D L L +L L L
Sbjct: 345 RLVNLEKLNLSGCHGV--SSLGFVANLSNLKELDISGCE-SLVCFDGLQDLNNLEVLYLR 401
Query: 237 RCQLSDDGCEKFSKIGSLKVLNL-------GFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ F+ +G++K L+ G IT L L+ L LE L+L+ CG
Sbjct: 402 DVK-------SFTNVGAIKNLSKMRELDLSGCERITS--LSGLETLKRLEELSLEGCG-- 450
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL---SSLKSLNLDA-RQITDTG----- 340
+++ + +L + + + G+L L+GL + L+ L L R+ T+ G
Sbjct: 451 --EIMSFDPIWSLHHLRVLYVS-ECGNLEDLSGLEGITGLEELYLHGCRKCTNFGPIWNL 507
Query: 341 ----------------LAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-G 382
L+ L LTGL L L G IT G + N +NL+ L C
Sbjct: 508 RNVCVLELSCCENLDDLSGLHCLTGLEELYLIGCEEITTIGV--VGNLRNLKCLSTCWCA 565
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L + G ++ L +L ++LS C L+ + L L SR+ L LK
Sbjct: 566 NLKELG--GLERLVNLEKVDLSGCCGLSSSVFMELMSLPKLQWFYGFGSRVPDIVLEELK 623
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 99/224 (44%), Gaps = 22/224 (9%)
Query: 249 SKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLTNLES 304
SK G K+LNL +E+ D L L+ L LE L+L C + E +V LT L NL
Sbjct: 107 SKNGRWKILNLSGCGSELQD--LTALRDLEALEDLDLSECANLELRELMVVLT-LRNLRK 163
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+ + T ++D + L L L +D G +T +TGL L A DS
Sbjct: 164 LRMKRTMVNDMWCSSIGLLKFLVHLEVD-------GSRGVTDITGLCRLKTLEALSLDSC 216
Query: 365 AAYLRNF------KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+ F L SL +C +TD ++ I L +L++S +TD L I+
Sbjct: 217 INITKGFDKICALPQLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIA 274
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
G+ L L++S + GL L +LR L + C V + +
Sbjct: 275 GVRSLEKLSLSGCWNVTKGLEELCKFFSLRELDISGCPVLGSAV 318
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 132/317 (41%), Gaps = 39/317 (12%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L L+ L LE L++ C + ++ + L NL+ L++ + V D + + L+ L
Sbjct: 127 LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSSIGLLKFLV 186
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L ++G + L L +L L+L+ C G +K + L L+L +TD+
Sbjct: 187 HLEVDGSRGVTD-ITGLCRLKTLEALSLDSCINITKGFDKICALPQLTSLSLCQTNVTDK 245
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L + L+ L++ SC +T+L +I AG+ SL+
Sbjct: 246 DLRCIHPDGKLKVLDISSC----------HEITDLTAI---------------AGVRSLE 280
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L+L GL L L LD+ G + S A LRN NL+ L + +
Sbjct: 281 KLSLSGCWNVTKGLEELCKFFSLRELDISGCPVLGS-AVVLRNLINLKVLSV-------S 332
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTD----KTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
K+ KDL+ L L + NL+ +L ++ L+ L L++S + L+
Sbjct: 333 NCKNFKDLNGLERLVNLEKLNLSGCHGVSSLGFVANLSNLKELDISGCE-SLVCFDGLQD 391
Query: 444 LKNLRSLTLESCKVTAN 460
L NL L L K N
Sbjct: 392 LNNLEVLYLRDVKSFTN 408
>gi|332666302|ref|YP_004449090.1| adenylate cyclase [Haliscomenobacter hydrossis DSM 1100]
gi|332335116|gb|AEE52217.1| Adenylate cyclase [Haliscomenobacter hydrossis DSM 1100]
Length = 1448
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 154/291 (52%), Gaps = 31/291 (10%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGS 229
SD+ L L NLK L + C + + I L ++L L+L ++ LD L+ L S
Sbjct: 332 SDLDGLDNLKNLKRLYLDCLDLKE--IPSLVTFKQLAHLDLSNNQISEIKNLDKLTQLQS 389
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L +L Q+S+ + F K+ L+ L+LG N+I++ + +L LT L+SL+L S I
Sbjct: 390 L---DLGNNQISE--IKNFDKLTQLQSLDLGINQISE--IKNLDKLTQLQSLDLGSNQIS 442
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
+ + NL LT L+S++L IS+ ++ L L+ L+SL+L QI++ + L +L
Sbjct: 443 E--IKNLDKLTQLQSLDLGINQISE--IKNLNKLTQLQSLDLRNNQISE--INNLITLIQ 496
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
L L L+G +I++ ++N L L+ D I+++S+L L Q+ ++
Sbjct: 497 LRSLSLWGNQISE-----IKNLDKLAQLQSL-----DFDSNQIREISNLDKLTQLQSLDI 546
Query: 410 TDKTLELISG---LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
+ I LT L SL + +++I+ +++L L L+SL+L+S ++
Sbjct: 547 RRNQISEIKNLDKLTQLQSLFIMDNQISE--IKNLDKLTQLQSLSLDSNQI 595
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 160/325 (49%), Gaps = 60/325 (18%)
Query: 173 MKPLSGLTNLKSLQI----SCSKVTD---------------------SGIAYLKGLQKLT 207
+K L G+T++KSL+I + ++D G+ LK L++L
Sbjct: 288 LKHLGGVTHVKSLKILTLGNLKHLSDYIFQRSFGFNYKHPQNVFSDLDGLDNLKNLKRLY 347
Query: 208 L--LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L+L+ P SL L +L+L+ Q+S+ + K+ L+ L+LG N+I+
Sbjct: 348 LDCLDLKEIP-------SLVTFKQLAHLDLSNNQISE--IKNLDKLTQLQSLDLGNNQIS 398
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
+ + + LT L+SL+L I + + NL LT L+S++L IS+ ++ L L+
Sbjct: 399 E--IKNFDKLTQLQSLDLGINQISE--IKNLDKLTQLQSLDLGSNQISE--IKNLDKLTQ 452
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L+SL+L QI++ + L LT L LDL +I++ L LRSL + G ++
Sbjct: 453 LQSLDLGINQISE--IKNLNKLTQLQSLDLRNNQISEINN--LITLIQLRSLSLWGNQIS 508
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
+ +K++ L+ L L+ N + + + LT L SL++ ++I+ +K
Sbjct: 509 E--IKNLDKLAQLQSLDFDSN---QIREISNLDKLTQLQSLDIRRNQISE--------IK 555
Query: 446 NLRSLT-LESCKVTANDIKRLQSRD 469
NL LT L+S + N I +++ D
Sbjct: 556 NLDKLTQLQSLFIMDNQISEIKNLD 580
>gi|383856950|ref|XP_003703969.1| PREDICTED: slit homolog 2 protein-like [Megachile rotundata]
Length = 672
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 119/460 (25%), Positives = 192/460 (41%), Gaps = 54/460 (11%)
Query: 17 SRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQ---GSSLLSVDLSGSDVTDS 72
S +T + EAFRD L L L P +D + +LL +DL+ +
Sbjct: 113 SNAITHIDPEAFRDNPGLITLELQNNP------LDEVKGHFLNSRTLLYLDLNSCGIRRL 166
Query: 73 GLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNA--ITAQGMKAFA 128
+ +NL +D N I G +HL T+L + + NA +T AFA
Sbjct: 167 NTQFFHNTTNLNKVDLSHNPLGSIEPGPFDHL------TNLEYLKLNACNLTHVSPDAFA 220
Query: 129 GLINLVKLDL-ERCTRIHGGLVNLKGLMKLESLNIKWCN------------------CIT 169
L NL +L++ E R L L++LE LNI+ +
Sbjct: 221 HLENLRELEMAENDLRTLSWTSILAPLIRLEYLNIRKTGITNLPGDAFAKNLYLRQLVLA 280
Query: 170 DSDMKPL-------SGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACL 221
D+++ L L +L+SL +S + D + KL +LNL G P+ AA L
Sbjct: 281 DNELWHLDVGNTLGHNLHSLQSLDLSNCNLQDRLSEEAFRNSSKLRVLNLSGNPMFAADL 340
Query: 222 DS-LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+ L L L L+L+ C L F L+ L++ N ++D + L L +LE
Sbjct: 341 TAVLRHLPKLHKLSLSNCSLRRLP-NAFHVFEHLEELDISHNPLSDAFVSLLNPLESLEY 399
Query: 281 LNLDSCGIGDEGLVNLTGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L++ C +G G + +T L+ + LS + +G L L SL+ N D +
Sbjct: 400 LDMSYCNLGYVGNYTFSHMTFLKKLILSGNKLHTLEEGLFANLTRLESLELNNCDLKTPI 459
Query: 338 DTGLAALTSLTGLTHLDLFGA--RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
D + + T + L L G + ++G+ F NL +L++ GL
Sbjct: 460 DPKVFGDRTSTDIIELKLSGNPLEVPENGSLLPEQFSNLETLDLSNCGLLHLNENLFTSA 519
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
+LT LNLS N + L + L L L++SN+ +++
Sbjct: 520 KNLTQLNLSGNNISRVENLACLKKLRALQHLDISNNNLST 559
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 129/312 (41%), Gaps = 41/312 (13%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N +T+ +GLT L S + +T + L L L+ P+ L+
Sbjct: 90 NKLTELKHDSFAGLTYLLEADFSSNAITHIDPEAFRDNPGLITLELQNNPLDEVKGHFLN 149
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ +L YL+LN C + + F +L ++L N + LTNLE L L++
Sbjct: 150 S-RTLLYLDLNSCGIRRLNTQFFHNTTNLNKVDLSHNPLGSIEPGPFDHLTNLEYLKLNA 208
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
C + T +S + L L L+ D R ++ T + L
Sbjct: 209 CNL---------------------THVSPDAFAHLENLRELEMAENDLRTLSWTSI--LA 245
Query: 346 SLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLT--DAGVKHIKDLSSLTLLN 402
L L +L++ IT+ G A+ +N LR L + L D G +L SL L+
Sbjct: 246 PLIRLEYLNIRKTGITNLPGDAFAKNLY-LRQLVLADNELWHLDVGNTLGHNLHSLQSLD 304
Query: 403 LSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTAN 460
LS NCNL D+ + E + L LN+S + + +A L L+ L L L+L +C +
Sbjct: 305 LS-NCNLQDRLSEEAFRNSSKLRVLNLSGNPMFAADLTAVLRHLPKLHKLSLSNCSL--- 360
Query: 461 DIKRLQSRDLPN 472
R LPN
Sbjct: 361 -------RRLPN 365
>gi|148909462|gb|ABR17829.1| unknown [Picea sitchensis]
Length = 455
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 146/313 (46%), Gaps = 37/313 (11%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD + L LT L L + SK+++ G LK KL LNL VT L AL
Sbjct: 20 VTDLVVSSLQALTQLHQLDMWGSKISNEGAILLKAFPKLNCLNLAWTNVT-----RLPAL 74
Query: 228 GSLFYLNLNRCQLSD--DGCEKFSKIGSLKVLNLGFN--EITDECLV----HLKGLTNLE 279
SL LN+++C + DG E+ + +L L F+ D V H + LT
Sbjct: 75 VSLTSLNMSKCTIESILDGLEE----PEISLLTLHFSGASFIDAYRVLSCLHAQNLT--- 127
Query: 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITD 338
LD G + + L G+ LES++LS TG+ D S+ +A + ++LK LNL ++T
Sbjct: 128 --FLDLSGSSIDNVSFLAGMNRLESLDLSCTGVIDSSMNSVADIGANLKHLNLSTTRVTS 185
Query: 339 TGLAALT-SLTGLTHLDLFGARITDSGAAY------LRN----FKNLRSLEICGGGLTDA 387
LA L ++ L + L + D+ AY LRN F N++ G ++
Sbjct: 186 DALAILAGNVPKLEFISLSHTMVDDNALAYLGLISALRNISLSFTNIKGFIHVGESESNP 245
Query: 388 --GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
+ ++ L L +L+L +N +++D + + L L L++ + ++ L + L
Sbjct: 246 QFSLASLRKLEHLEILDL-ENTHISDLACQPLIFLKELYHLSLRSDFLSDISLHTVSSLP 304
Query: 446 NLRSLTLESCKVT 458
L+ L+++ VT
Sbjct: 305 KLKYLSIQGAVVT 317
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 155/324 (47%), Gaps = 27/324 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL S+DL G VTD + L+ + L LD + +IS+ G L+ L L+
Sbjct: 8 TSLTSLDLGGLPVTDLVVSSLQALTQLHQLDM-WGSKISNEGAILLKAFPKLNCLNLAWT 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCT--RIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N + L++L L++ +CT I GL + + L +L+ + I +
Sbjct: 67 N------VTRLPALVSLTSLNMSKCTIESILDGLEEPE--ISLLTLHFSGASFIDAYRVL 118
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS-LFYL 233
NL L +S S + + +++L G+ +L L+L V + ++S++ +G+ L +L
Sbjct: 119 SCLHAQNLTFLDLSGSSIDN--VSFLAGMNRLESLDLSCTGVIDSSMNSVADIGANLKHL 176
Query: 234 NLNRCQLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI---- 288
NL+ +++ D + + L+ ++L + D L +L ++ L +++L I
Sbjct: 177 NLSTTRVTSDALAILAGNVPKLEFISLSHTMVDDNALAYLGLISALRNISLSFTNIKGFI 236
Query: 289 --GDE------GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
G+ L +L L +LE ++L T ISD + + L L L L+L + ++D
Sbjct: 237 HVGESESNPQFSLASLRKLEHLEILDLENTHISDLACQPLIFLKELYHLSLRSDFLSDIS 296
Query: 341 LAALTSLTGLTHLDLFGARITDSG 364
L ++SL L +L + GA +T +G
Sbjct: 297 LHTVSSLPKLKYLSIQGAVVTKTG 320
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 130/320 (40%), Gaps = 35/320 (10%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T + + L L +LD+ + G + LK KL LN+ W N + L+
Sbjct: 19 PVTDLVVSSLQALTQLHQLDMWGSKISNEGAILLKAFPKLNCLNLAWTNVTRLPALVSLT 78
Query: 178 GLT-----------NLKSLQISCSKVTDSGIAYLKGL--------QKLTLLNLEGCPVTA 218
L L+ +IS + SG +++ Q LT L+L G +
Sbjct: 79 SLNMSKCTIESILDGLEEPEISLLTLHFSGASFIDAYRVLSCLHAQNLTFLDLSGSSIDN 138
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKG-LT 276
L+ + L L+L+ + D + IG+ LK LNL +T + L L G +
Sbjct: 139 VSF--LAGMNRLESLDLSCTGVIDSSMNSVADIGANLKHLNLSTTRVTSDALAILAGNVP 196
Query: 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI------------SDGSLRKLAGLS 324
LE ++L + D L L ++ L +I+LSFT I SL L L
Sbjct: 197 KLEFISLSHTMVDDNALAYLGLISALRNISLSFTNIKGFIHVGESESNPQFSLASLRKLE 256
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L+ L+L+ I+D L L L HL L ++D + + L+ L I G +
Sbjct: 257 HLEILDLENTHISDLACQPLIFLKELYHLSLRSDFLSDISLHTVSSLPKLKYLSIQGAVV 316
Query: 385 TDAGVKHIKDLSSLTLLNLS 404
T G+ L +L+LS
Sbjct: 317 TKTGLCSFVPPPLLQVLDLS 336
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 35/233 (15%)
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN 306
+ S + SL L+LG +TD + L+ LT L L++ I +EG + L L +N
Sbjct: 3 RLSVLTSLTSLDLGGLPVTDLVVSSLQALTQLHQLDMWGSKISNEGAILLKAFPKLNCLN 62
Query: 307 LSFTGISDGSLRKLAGLSSLKSLN---------LDARQITDTGLAALT------------ 345
L++T ++ +L L SL SLN LD + + L L
Sbjct: 63 LAWTNVT-----RLPALVSLTSLNMSKCTIESILDGLEEPEISLLTLHFSGASFIDAYRV 117
Query: 346 ----SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL-SSLTL 400
LT LDL G+ I + ++L L SL++ G+ D+ + + D+ ++L
Sbjct: 118 LSCLHAQNLTFLDLSGSSIDN--VSFLAGMNRLESLDLSCTGVIDSSMNSVADIGANLKH 175
Query: 401 LNLSQNCNLTDKTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
LNLS +T L +++G + L +++S++ + L +L + LR+++L
Sbjct: 176 LNLS-TTRVTSDALAILAGNVPKLEFISLSHTMVDDNALAYLGLISALRNISL 227
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+ +L+ L+SL SL+L +TD +++L +LT L LD++G++I++ GA L+ F L
Sbjct: 1 MARLSVLTSLTSLDLGGLPVTDLVVSSLQALTQLHQLDMWGSKISNEGAILLKAFPKLNC 60
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L + +T + L SLT LN+S+
Sbjct: 61 LNLAWTNVT-----RLPALVSLTSLNMSK 84
>gi|226505408|ref|NP_001147557.1| LOC100281166 [Zea mays]
gi|195612174|gb|ACG27917.1| EIN3-binding F-box protein 1 [Zea mays]
gi|413943753|gb|AFW76402.1| EIN3-binding F-box protein 1 [Zea mays]
Length = 626
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 131/467 (28%), Positives = 208/467 (44%), Gaps = 64/467 (13%)
Query: 39 GQYP--GVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQI 94
G +P GV D + +A L S+ L VTD+GL + +C +L+ LD + C I
Sbjct: 152 GSHPARGVTDAGISALARGCPELRSLTLWDVPQVTDAGLAEVAAECHSLERLDISGCPMI 211
Query: 95 SDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGL-INLVKLDLERCTRIH----GGL 148
+D GL + +G L SL+ + + +G+KA L + ++ C + GL
Sbjct: 212 TDKGLAAVAQGCPELKSLTIEGCSGVANEGLKAVGRFCAKLQAVSIKNCALVDDQGVSGL 271
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQIS-CSKVTDSGIAYLK---GL 203
V L + ++ N ITD+ + + ++K L +S V + G + GL
Sbjct: 272 VCSATASSLTKVRLQGLN-ITDASLAVIGYYGKSIKDLTLSRLPAVGERGFWVMANALGL 330
Query: 204 QKLTLLNLEGCP-VTAACLDSLSALG-SLFYLNLNRCQLSDDGC-EKFSKIGSLKVL-NL 259
QKL + + CP +T L S++ SL +NL RC DGC ++F++ S KVL NL
Sbjct: 331 QKLRRMTVVSCPGLTDLALASVAKFSPSLRLVNLKRCSKVSDGCLKEFAE--SSKVLENL 388
Query: 260 GFNEITDECLVHLKGL-----TNLESLNLDSC-GIGD--EGLVNLTGLTNLESINLS-FT 310
E + L + +SL+L C GI D L +L S+ +
Sbjct: 389 QIEECSRVTLTGILAFLLNCSPKFKSLSLSKCVGIKDICSAPAQLPVCKSLRSLAIKDCP 448
Query: 311 GISDGSLRKLAGL-SSLKSLNLDA-RQITDTGLAAL--TSLTGLTHLDLFGARITDSGAA 366
G +D SL + + L+++NL +TD+G L +S +GL ++DL G
Sbjct: 449 GFTDASLAVVGMICPQLENVNLSGLSAVTDSGFLPLIKSSNSGLVNVDLNGCE------- 501
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS-QNCN-LTDKTLELIS-GLTGL 423
LTDA V + +L +LS + C+ +TD +L IS + L
Sbjct: 502 ----------------NLTDAAVSALVKAHGASLAHLSLEGCSKITDASLFAISESCSQL 545
Query: 424 VSLNVSNSRITSAGLRHLKPLKN--LRSLTLESC-KVTANDIKRLQS 467
L++SN ++ G+ L K LR L+L C KVT + L S
Sbjct: 546 AELDLSNCMVSDYGVAVLAAAKQLRLRVLSLSGCMKVTQKSVPFLGS 592
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 53/189 (28%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSN--LQSLDF 88
+L+ L + PG D + V+ L +V+LSG S VTDSG + L SN L ++D
Sbjct: 438 SLRSLAIKDCPGFTDASLAVVGMICPQLENVNLSGLSAVTDSGFLPLIKSSNSGLVNVDL 497
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
N C ++D + L + HG
Sbjct: 498 NGCENLTDAAVSAL---------------------------------------VKAHGA- 517
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L L+++ C+ ITD+ + +S + L L +S V+D G+A L ++L
Sbjct: 518 -------SLAHLSLEGCSKITDASLFAISESCSQLAELDLSNCMVSDYGVAVLAAAKQLR 570
Query: 208 L--LNLEGC 214
L L+L GC
Sbjct: 571 LRVLSLSGC 579
>gi|290980573|ref|XP_002673006.1| predicted protein [Naegleria gruberi]
gi|284086587|gb|EFC40262.1| predicted protein [Naegleria gruberi]
Length = 361
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 111/227 (48%), Gaps = 3/227 (1%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K + L L L +S + + G+ +L L +LT L + + + +S + L
Sbjct: 131 IKKIGSLKQLTILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTK 190
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L+ C++ D G + SK+ +L L L N +TDE + + L L L + +G EG
Sbjct: 191 LDLSNCRIMD-GVQYLSKLENLTSLRLCGNRLTDERVESISNLKQLTELYIGENQLGTEG 249
Query: 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
++ +T L +N+ IS G ++ L L L LN+ +I DTG+ ++ + LT
Sbjct: 250 AKSIGNMTQLTRLNIQQNRISQG-VKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTK 308
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSL 398
L + +I++ GA L + L L+I +++ + K++ SL
Sbjct: 309 LTIRDNKISEEGAKTLGLLQKLTYLDISDNSVSNVTANSMQKNMKSL 355
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 29/246 (11%)
Query: 246 EKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
+ ++I SLK +N I D E L+G+ +L+ + + G +G+ + L L
Sbjct: 82 QYLNRIVSLKTVNSFDGSIIDNVELCEILQGMKDLKEVWIYKQLKGVKGIKKIGSLKQLT 141
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+++S+ I G ++ L LS L L + I D + ++ + LT LDL RI D
Sbjct: 142 ILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTKLDLSNCRIMD- 200
Query: 364 GAAYLRNFKNLRSLEICGGGLTDA------------------------GVKHIKDLSSLT 399
G YL +NL SL +CG LTD G K I +++ LT
Sbjct: 201 GVQYLSKLENLTSLRLCGNRLTDERVESISNLKQLTELYIGENQLGTEGAKSIGNMTQLT 260
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
LN+ QN + ++ + L L LN+S ++I G+ + + L LT+ K++
Sbjct: 261 RLNIQQNR--ISQGVKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLTIRDNKISE 318
Query: 460 NDIKRL 465
K L
Sbjct: 319 EGAKTL 324
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 11/206 (5%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I GG++ L LS LT L NN+I +K + + L KLDL C RI G+ L
Sbjct: 150 IGYGGVKWLTQLSQLTELRIG-NNSIFDDDIKMISEMKQLTKLDLSNC-RIMDGVQYLSK 207
Query: 154 LMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L SL + C N +TD ++ +S L L L I +++ G + + +LT LN++
Sbjct: 208 LENLTSL--RLCGNRLTDERVESISNLKQLTELYIGENQLGTEGAKSIGNMTQLTRLNIQ 265
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
++ + L L L LN+++ ++ D G S++ L L + N+I++E L
Sbjct: 266 QNRISQG-VKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLTIRDNKISEEGAKTL 324
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTG 298
L L L+ I D + N+T
Sbjct: 325 GLLQKLTYLD-----ISDNSVSNVTA 345
>gi|51850106|dbj|BAD42394.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 462
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 1/246 (0%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
KL SLN+ N I+D+ + L L L IS +++ D+G L G KL L+ C
Sbjct: 216 KLTSLNVG-RNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDCG 274
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ +L+A +L L+L ++ G E + L LN+ N + L
Sbjct: 275 IGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAAS 334
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L L++ + GIG+ G L L +N++ GI + R LA ++L +L++ + +
Sbjct: 335 AALTELDIGNNGIGNAGARALGANATLVKLNVANNGIEEAGARALAASTTLTALDIGSNR 394
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I D G AL + L LD I D GA L + L +L + + +AG++ ++
Sbjct: 395 IGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRALEAS 454
Query: 396 SSLTLL 401
++L +L
Sbjct: 455 TTLAVL 460
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 125/299 (41%), Gaps = 48/299 (16%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+T +GIA L L L L++ GC + A L++ +L LN++R + DDG +
Sbjct: 155 PITSAGIARLLAL-PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDGAAALAA 213
Query: 251 IGSLKVLNLGFNEITD---ECLVHLKGLTNLE---------------------SLNLDSC 286
L LN+G N I+D LV GLT L+ L+ C
Sbjct: 214 NPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC 273
Query: 287 GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
GIG EG L L ++L + I G LA L SLN+ + G A L +
Sbjct: 274 GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAA 333
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT LD+ I ++GA L L L + G+ +AG + + ++LT L++ N
Sbjct: 334 SAALTELDIGNNGIGNAGARALGANATLVKLNVANNGIEEAGARALAASTTLTALDIGSN 393
Query: 407 -----------CNLTDKTLELISGLTG------------LVSLNVSNSRITSAGLRHLK 442
N T TL+ + G L +LNV +RI AG+R L+
Sbjct: 394 RIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRALE 452
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 29/247 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +D+S + + D+G L + L LD C
Sbjct: 239 AGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC------------------------- 273
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKP 175
I +G +A A L +LDL GG L +L SLN+ C N + +
Sbjct: 274 -GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNV--CGNALGSAGAAL 330
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L L I + + ++G L L LN+ + A +L+A +L L++
Sbjct: 331 LAASAALTELDIGNNGIGNAGARALGANATLVKLNVANNGIEEAGARALAASTTLTALDI 390
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ D G + + +L L+ N I D + L T L +LN+ + IG+ G+
Sbjct: 391 GSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRA 450
Query: 296 LTGLTNL 302
L T L
Sbjct: 451 LEASTTL 457
>gi|290979531|ref|XP_002672487.1| leucine-rich repeat domain protein [Naegleria gruberi]
gi|284086064|gb|EFC39743.1| leucine-rich repeat domain protein [Naegleria gruberi]
Length = 612
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 6/219 (2%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ S +L LN+N ++ + SK+ L LN+G N+IT HLK L NL +L
Sbjct: 349 NDFSMFKNLTELNVNETKIGNKVLLAISKMTQLTSLNIGKNDITKNVFKHLKKLDNLTAL 408
Query: 282 NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTG 340
+L+ CG+ D + L LT + +NL + L+KL L +L+ LN + ++ T
Sbjct: 409 DLEDCGVKD--ITPLAKLTKITKLNLKNNYLKGEWLQKLVSYLPNLRKLNSEGNEL--TS 464
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
LA L+ LT + L L + +D L++ L L+ D G + K L
Sbjct: 465 LAPLSLLTNIQKLKLKSLKFSDIKEMQLQHLLKLEYLDKLSITSMDIGEEGAKILGRGRF 524
Query: 401 LNLSQN-CNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
+L N C L D+ L I T L +L++ + +T G+
Sbjct: 525 KHLKLNICELHDRALPFILTNTSLRTLDLQKNNLTEKGV 563
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 7/193 (3%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+S +T L SL I + +T + +LK L LT L+LE C V + L+ L + LNL
Sbjct: 375 ISKMTQLTSLNIGKNDITKNVFKHLKKLDNLTALDLEDCGVKD--ITPLAKLTKITKLNL 432
Query: 236 NRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L + +K S + +L+ LN NE+T L L LTN++ L L S D +
Sbjct: 433 KNNYLKGEWLQKLVSYLPNLRKLNSEGNELT--SLAPLSLLTNIQKLKLKSLKFSDIKEM 490
Query: 295 NLTGLTNLESIN-LSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
L L LE ++ LS T + G K+ G K L L+ ++ D L + + T L
Sbjct: 491 QLQHLLKLEYLDKLSITSMDIGEEGAKILGRGRFKHLKLNICELHDRALPFILTNTSLRT 550
Query: 353 LDLFGARITDSGA 365
LDL +T+ G
Sbjct: 551 LDLQKNNLTEKGV 563
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 116/245 (47%), Gaps = 22/245 (8%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL--- 259
+ LT LN+ + L ++S + L LN+ + ++ + + K+ +L L+L
Sbjct: 354 FKNLTELNVNETKIGNKVLLAISKMTQLTSLNIGKNDITKNVFKHLKKLDNLTALDLEDC 413
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LTNLESINLSFTGISDGSLR 318
G +IT L LT + LNL + + E L L L NL +N G SL
Sbjct: 414 GVKDITP-----LAKLTKITKLNLKNNYLKGEWLQKLVSYLPNLRKLNSE--GNELTSLA 466
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD---LFGARITDSGAAYL--RNFKN 373
L+ L++++ L L + + +D L L L +LD + I + GA L FK+
Sbjct: 467 PLSLLTNIQKLKLKSLKFSDIKEMQLQHLLKLEYLDKLSITSMDIGEEGAKILGRGRFKH 526
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG--LTGLVSLNVSNS 431
L+ L IC L D + I +SL L+L +N NLT+K + +IS L + +NVS +
Sbjct: 527 LK-LNIC--ELHDRALPFILTNTSLRTLDLQKN-NLTEKGVNIISKSYLPFMQKVNVSEN 582
Query: 432 RITSA 436
+ ++
Sbjct: 583 KYYAS 587
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
+LT LN+++ + +K L IS +T L SLN+ + IT +HLK L NL +L LE
Sbjct: 354 FKNLTELNVNE-TKIGNKVLLAISKMTQLTSLNIGKNDITKNVFKHLKKLDNLTALDLED 412
Query: 455 CKV 457
C V
Sbjct: 413 CGV 415
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 60/260 (23%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L S+++ +D+T + HLK NL +LD + D G++ + L+ LT ++
Sbjct: 376 SKMTQLTSLNIGKNDITKNVFKHLKKLDNLTALD------LEDCGVKDITPLAKLTKITK 429
Query: 114 --RRNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+NN + + + K + L NL KL+ E N +T
Sbjct: 430 LNLKNNYLKGEWLQKLVSYLPNLRKLNSE-------------------------GNELT- 463
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ PLS LTN++ L++ K +D +K +Q LL LE LD LS
Sbjct: 464 -SLAPLSLLTNIQKLKLKSLKFSD-----IKEMQLQHLLKLE-------YLDKLS----- 505
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
+ + ++G + + G K L L E+ D L + T+L +L+L + +
Sbjct: 506 ----ITSMDIGEEGAKILGR-GRFKHLKLNICELHDRALPFILTNTSLRTLDLQKNNLTE 560
Query: 291 EG--LVNLTGLTNLESINLS 308
+G +++ + L ++ +N+S
Sbjct: 561 KGVNIISKSYLPFMQKVNVS 580
>gi|356495085|ref|XP_003516411.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
Length = 671
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 124/426 (29%), Positives = 197/426 (46%), Gaps = 63/426 (14%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS------GLIHLKD------- 79
L+ +CL G+ D +D++A + L ++DLS +T+ L HL+D
Sbjct: 183 LRVICLKWCVGIGDLGVDLVAIKCKELTTLDLSYLPITEKCLPSIFKLQHLEDLVLEGCF 242
Query: 80 ---------------CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
C L+ LD + C IS H+ GLS LTS+S I+A G
Sbjct: 243 GIDDDSLDVDLLKQGCKTLKKLDISGCQNIS-----HV-GLSKLTSISGGLEKLISADGS 296
Query: 125 KAFAGLIN-LVKLDLERCTRIHGGLVNLKGL-------MKLESLNIKWCNCITDSDMKPL 176
L + L KL + + + G V +GL + L L++ C +TD + L
Sbjct: 297 PVTLSLADGLNKLSMLQSIVLDGCPVTSEGLRAIGNLCISLRELSLSKCLGVTDEALSFL 356
Query: 177 -SGLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFY- 232
S +L+ L I+ C K+TD IA + LT L +E C + + ++ +G +
Sbjct: 357 VSKHKDLRKLDITCCRKITDVSIASISNSCAGLTSLKMESCTLVPS--EAFVLIGEKCHY 414
Query: 233 ---LNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHL-KGLTNLESLNL-DSC 286
L+L ++ D+G S L L +G ITD L ++ + L+ L+L S
Sbjct: 415 IEELDLTDNEIDDEGLMSISSCSRLSSLKIGICLNITDRGLTYVGMHCSKLKELDLYRST 474
Query: 287 GIGDEGLVNLT-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 343
G+ D G+ + G LE IN S+ T I+D +L L+ S+LK+L + +T GLAA
Sbjct: 475 GVDDLGISAIARGCPGLEMINTSYCTSITDRALITLSKCSNLKTLEIRGCLLVTSIGLAA 534
Query: 344 LT-SLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAG---VKHIKDLSS 397
+ + L+ LD+ I DSG L +F +NLR + + +TD G + +I L S
Sbjct: 535 IAMNCRQLSRLDIKKCYNIDDSGMIALAHFSQNLRQINLSYSSVTDVGLLSLANISCLQS 594
Query: 398 LTLLNL 403
T+L+L
Sbjct: 595 FTVLHL 600
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 56/274 (20%)
Query: 18 RCLTEVSLEAFRD-CA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLI 75
R +T+VS+ + + CA L L + V + +I + + +DL+ +++ D GL+
Sbjct: 372 RKITDVSIASISNSCAGLTSLKMESCTLVPSEAFVLIGEKCHYIEELDLTDNEIDDEGLM 431
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
+ CS L SL C+ I+D GL ++ S L L R+ + G+ A A
Sbjct: 432 SISSCSRLSSLKIGICLNITDRGLTYVGMHCSKLKELDLYRSTGVDDLGISAIA------ 485
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
+G LE +N +C ITD + LS +NLK+L+I C VT
Sbjct: 486 -----------------RGCPGLEMINTSYCTSITDRALITLSKCSNLKTLEIRGCLLVT 528
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD----GCEKFS 249
G+A + +N L L++ +C DD FS
Sbjct: 529 SIGLAAIA-------MNCR----------------QLSRLDIKKCYNIDDSGMIALAHFS 565
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ +L+ +NL ++ +TD L+ L ++ L+S +
Sbjct: 566 Q--NLRQINLSYSSVTDVGLLSLANISCLQSFTV 597
>gi|300704108|ref|YP_003745710.1| leucine-rich-repeat type III effector protein (gala4) [Ralstonia
solanacearum CFBP2957]
gi|299071771|emb|CBJ43095.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum CFBP2957]
Length = 461
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 139/314 (44%), Gaps = 14/314 (4%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA----ITAQGMK 125
TD+ L L +L+ LD + C +G + + G+++L +L R + + A +
Sbjct: 134 TDADLQRLP--PSLRELDLSLC----EGPITAV-GIAHLLALPLDRLDVSGCELNADSAR 186
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
AG L L+L R G+ KL +LN+ N I + ++ L+ T + +L
Sbjct: 187 LLAGHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVS-SNGIGPAGVRALAANTTITTL 245
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
IS +++ D G L LT L+ C + +L+ +L L+L+ + +G
Sbjct: 246 DISNNEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGV 305
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305
E + +L+ L+ NE+ L T L LNL S IG+ G T L +
Sbjct: 306 EALGRNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLVEL 365
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
NLS GI + + A L +L+L QI DT L + LT L++ RI D+GA
Sbjct: 366 NLSNNGIE--RVPEWADNGKLTTLDLSNNQIGDTAAQVLAASRTLTTLNVGSNRIGDTGA 423
Query: 366 AYLRNFKNLRSLEI 379
L L +L +
Sbjct: 424 CALAGNTTLTTLNV 437
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 134/292 (45%), Gaps = 8/292 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQIS-CS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
TD+D++ L +L+ L +S C +T GIA+L L L L++ GC + A L+
Sbjct: 133 FTDADLQRLP--PSLRELDLSLCEGPITAVGIAHLLAL-PLDRLDVSGCELNADSARLLA 189
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L LNL R + D G F++ L LN+ N I + L T + +L++ +
Sbjct: 190 GHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVSSNGIGPAGVRALAANTTITTLDISN 249
Query: 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
IGDEG + L T L ++ S GI + LA ++L SL+L I G+ AL
Sbjct: 250 NEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALG 309
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
T L L G + A L L L + + +AG + ++L LNLS
Sbjct: 310 RNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLVELNLSN 369
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
N ++ E L +L++SN++I + L + L +L + S ++
Sbjct: 370 NG--IERVPEWADN-GKLTTLDLSNNQIGDTAAQVLAASRTLTTLNVGSNRI 418
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 120/276 (43%), Gaps = 11/276 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +++L + + D+G+ L +L+ + I G+ L + +T+L N
Sbjct: 192 PTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVS-SNGIGPAGVRALAANTTITTLDIS-N 249
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I +G A A L +LD C G L L SL++ + N I ++ L
Sbjct: 250 NEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATSTTLTSLDLSY-NAIEAEGVEAL 308
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
T L++L +++ L LT+LNL + A + A +L LNL
Sbjct: 309 GRNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLVELNL- 367
Query: 237 RCQLSDDGCEKFSKI---GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
S++G E+ + G L L+L N+I D L L +LN+ S IGD G
Sbjct: 368 ----SNNGIERVPEWADNGKLTTLDLSNNQIGDTAAQVLAASRTLTTLNVGSNRIGDTGA 423
Query: 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L G T L ++N+S I + LA ++L+ L
Sbjct: 424 CALAGNTTLTTLNVSLNRIGKAGMLALAANTTLEKL 459
>gi|189094786|emb|CAQ57472.1| expression site-associated gene 8 (ESAG8) protein [Trypanosoma
brucei brucei]
gi|189094795|emb|CAQ57484.1| expression site-associated gene 8 (ESAG8) protein [Trypanosoma
brucei brucei]
Length = 630
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 181/420 (43%), Gaps = 62/420 (14%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+ L ++VTD L + L+ LD + C +I+D L + G+ +L LS
Sbjct: 231 QLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIAGVRSLEKLSLSGCW 288
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T +G++ NL +LD+ C + G V LK L+ L+ L++ NC D+ L
Sbjct: 289 NVT-KGLEELCKFSNLRELDISGCL-VLGSAVVLKNLINLKVLSVS--NCKNFKDLNGLE 344
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L NL+ L +S C V S +A++ L L LN+ GC + C D L L L L L
Sbjct: 345 RLVNLEKLNLSGCHGV--SSLAFVANLSNLKELNISGCE-SLVCFDGLQDLNKLEVLYLR 401
Query: 237 RCQLSDDGCEKFSKIGSLKVLNL-------GFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ F+ +G++K L+ G IT L L+ L LE L+L+ CG
Sbjct: 402 DVK-------SFTNVGAIKNLSKMRELDLSGCERITS--LSGLETLKGLEELSLEGCG-- 450
Query: 290 DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN----LDARQITDTG----- 340
+++ + +L + + + G+L L+GL L L R+ T+ G
Sbjct: 451 --EIMSFGPIWSLHHLRVLYVS-ECGNLEDLSGLQCLTGLEELYLHGCRKCTNFGPIWNL 507
Query: 341 ----------------LAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-G 382
L+ L LTGL L L G IT G + N +NL+ L C
Sbjct: 508 RNVCVLELSCCENLDDLSGLQCLTGLEELYLIGCEEITTIGV--VGNLRNLKCLSTCWCA 565
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L + G ++ L +L L+LS C L+ + L L SR+ L LK
Sbjct: 566 NLKELG--GLERLVNLEKLDLSGCCGLSSSVFMELMSLPKLQWFYGFGSRVPDIVLEELK 623
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 129/441 (29%), Positives = 200/441 (45%), Gaps = 73/441 (16%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN--------- 116
GS++ D L L+D L+ LD + C + L + L NL L +R
Sbjct: 121 GSELQD--LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSS 178
Query: 117 ----------NAITAQGMKAFAGLINLVKLD---LERCTRIHGGLVNLKGLMKLESLNIK 163
++G+ GL L L+ L+ C I G + L +L SL++
Sbjct: 179 IGLLKFLVHLEVDGSRGVTDITGLCRLKTLEALSLDNCINITKGFDKICALPQLTSLSLC 238
Query: 164 WCNCITDSDMKPLSGLTNLKSLQI-SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACL 221
N +TD D++ + LK L I SC ++TD + IA ++ L+KL+ L GC L
Sbjct: 239 QTN-VTDKDLRCIHPDGKLKVLDISSCHEITDLTAIAGVRSLEKLS---LSGCWNVTKGL 294
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGLTN 277
+ L +L L+++ C + + +LKVL++ F ++ L+ L N
Sbjct: 295 EELCKFSNLRELDISGCLVLGSAV-VLKNLINLKVLSVSNCKNFKDLNG-----LERLVN 348
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSLN 330
LE LNL C G L + L+NL+ +N+S F G+ D L+ L+ L
Sbjct: 349 LEKLNLSGCH-GVSSLAFVANLSNLKELNISGCESLVCFDGLQD--------LNKLEVLY 399
Query: 331 L-DARQITDTGLAALTSLTGLTHLDLFGA-RITD-SGAAYLRNFKNLRSLEICGGGLTDA 387
L D + T+ G A+ +L+ + LDL G RIT SG L+ + L SLE CG ++
Sbjct: 400 LRDVKSFTNVG--AIKNLSKMRELDLSGCERITSLSGLETLKGLEEL-SLEGCGEIMS-- 454
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
I L L +L +S+ NL D L + LTGL L + R + + P+ NL
Sbjct: 455 -FGPIWSLHHLRVLYVSECGNLED--LSGLQCLTGLEELYLHGCRKCT----NFGPIWNL 507
Query: 448 RSL-TLE-SCKVTANDIKRLQ 466
R++ LE SC +D+ LQ
Sbjct: 508 RNVCVLELSCCENLDDLSGLQ 528
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 102/220 (46%), Gaps = 14/220 (6%)
Query: 249 SKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLTNLES 304
SK G K+LNL +E+ D L L+ L LE L+L C + E +V LT L NL
Sbjct: 107 SKNGRWKILNLSGCGSELQD--LTALRDLEALEDLDLSECANLELRELMVVLT-LRNLRK 163
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITD-TGLAALTSLTGLTHLDLFGARITD 362
+ + T ++D + L L L +D +R +TD TGL L +L L+ L
Sbjct: 164 LRMKRTMVNDMWCSSIGLLKFLVHLEVDGSRGVTDITGLCRLKTLEALS---LDNCINIT 220
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
G + L SL +C +TD ++ I L +L++S +TD L I+G+
Sbjct: 221 KGFDKICALPQLTSLSLCQTNVTDKDLRCIHPDGKLKVLDISSCHEITD--LTAIAGVRS 278
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
L L++S + GL L NLR L + C V + +
Sbjct: 279 LEKLSLSGCWNVTKGLEELCKFSNLRELDISGCLVLGSAV 318
>gi|315280691|ref|ZP_07869526.1| internalin A [Listeria marthii FSL S4-120]
gi|313615662|gb|EFR88972.1| internalin A [Listeria marthii FSL S4-120]
Length = 478
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 129/255 (50%), Gaps = 26/255 (10%)
Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKG---LMKLESLNIKWCNCITDSDMKPLSGL 179
G + L++ +LD R + + +++G L L LNI SD+K L+ L
Sbjct: 40 GKASVTDLVSQSELDALTQLRTYLPIESIEGIQYLTNLTELNISNTEVSDISDLKDLTKL 99
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
T+L+ Q + + D+ + L+ L LT L+L +T + ++ L +L +LNL Q
Sbjct: 100 TDLEMYQ---NNIVDTSV--LENLTNLTDLDLHDNKITD--ISAVRNLTNLVHLNLAYNQ 152
Query: 240 LSDDGCEKFSKIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+SD S + +L LN+ + N+I+D + + LTN+ SL+LD I D G L
Sbjct: 153 ISD-----ISAVSALSKLNMVWFTENQISD--ISPVANLTNITSLSLDYNQISDIGA--L 203
Query: 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
T LTNL+ + + ISD + LA L++L + L QI+D L + +LT LT + L
Sbjct: 204 TNLTNLDGLGIDNNQISD--ISPLANLTNLDYVGLHNNQISD--LTPIANLTNLTRMYLS 259
Query: 357 GARITDSGAAYLRNF 371
G +IT+ Y N
Sbjct: 260 GQQITNKPLPYQSNI 274
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 25/218 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +++S ++V+D + LKD + L L+ + I D + L L+NLT L +
Sbjct: 75 TNLTELNISNTEVSD--ISDLKDLTKLTDLEM-YQNNIVDTSV--LENLTNLTDLDLH-D 128
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + A L NLV L+L + + ++ + L LN+ W SD+ P+
Sbjct: 129 NKIT--DISAVRNLTNLVHLNLA-----YNQISDISAVSALSKLNMVWFTENQISDISPV 181
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF---YL 233
+ LTN+ SL + ++++D G L LT NL+G + + +S L +L Y+
Sbjct: 182 ANLTNITSLSLDYNQISDIG-----ALTNLT--NLDGLGIDNNQISDISPLANLTNLDYV 234
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
L+ Q+SD + + +L + L +IT++ L +
Sbjct: 235 GLHNNQISD--LTPIANLTNLTRMYLSGQQITNKPLPY 270
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 15/175 (8%)
Query: 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
E + + LTNL +N+S T +SD + L L+ L L + I DT + L +LT L
Sbjct: 66 ESIEGIQYLTNLTELNISNTEVSD--ISDLKDLTKLTDLEMYQNNIVDTSV--LENLTNL 121
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T LDL +ITD A +RN NL L + ++D + + LS L ++ ++N ++
Sbjct: 122 TDLDLHDNKITDISA--VRNLTNLVHLNLAYNQISD--ISAVSALSKLNMVWFTEN-QIS 176
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
D + ++ LT + SL++ ++I+ G L L NL L +++ +++ DI L
Sbjct: 177 D--ISPVANLTNITSLSLDYNQISDIG--ALTNLTNLDGLGIDNNQIS--DISPL 225
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,670,603,403
Number of Sequences: 23463169
Number of extensions: 262889159
Number of successful extensions: 886226
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5302
Number of HSP's successfully gapped in prelim test: 18131
Number of HSP's that attempted gapping in prelim test: 711048
Number of HSP's gapped (non-prelim): 96274
length of query: 479
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 333
effective length of database: 8,933,572,693
effective search space: 2974879706769
effective search space used: 2974879706769
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)