BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011708
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 123/264 (46%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN T L++ +T +K + NL
Sbjct: 121 NISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYL---TVTESKVKDVTPIANLT 177
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLN--IKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ T L SL+I +K+
Sbjct: 178 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANXTRLNSLKIGNNKI 233
Query: 193 TDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
TD L L+ L L +L + Q+SD K +
Sbjct: 234 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 265
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
LK LN+G N+I+D + L L+ L SL L++ +G+E + GLTNL ++ LS I
Sbjct: 266 KLKXLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS S + A Q+
Sbjct: 324 TD--IRPLASLSKXDSADF-ANQV 344
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 85/202 (42%), Gaps = 48/202 (23%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 54 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 102
Query: 199 YXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK--- 255
+SAL +L NL L++D S + +L
Sbjct: 103 -------------------------ISALQNLT--NLRELYLNEDNISDISPLANLTKXY 135
Query: 256 VLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314
LNLG N ++D L L T L L + + D + + LT+L S++L++ I D
Sbjct: 136 SLNLGANHNLSD--LSPLSNXTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED 191
Query: 315 GSLRKLAGLSSLKSLNLDARQI 336
+ LA L+SL QI
Sbjct: 192 --ISPLASLTSLHYFTAYVNQI 211
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 107/247 (43%), Gaps = 40/247 (16%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG---LVNLKGLMKLE 158
++G+ LT+L + + + + L NLVKL T ++ G + ++ L L
Sbjct: 59 IQGIEYLTNLEYLN---LNGNQITDISPLSNLVKL-----TNLYIGTNKITDISALQNLT 110
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTD-------SGIAYXXXXXXXXXXX 210
+L + N SD+ PL+ LT SL + + ++D +G+ Y
Sbjct: 111 NLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNY---LTVTESKV 167
Query: 211 XEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ P+ + L L+ L+LN Q+ D + + SL N+ITD +
Sbjct: 168 KDVTPI--------ANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD--IT 215
Query: 271 HLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+ T L SL + + I D L NL+ LT LE + ISD + + L+ LK L
Sbjct: 216 PVANXTRLNSLKIGNNKITDLSPLANLSQLTWLE---IGTNQISD--INAVKDLTKLKXL 270
Query: 330 NLDARQI 336
N+ + QI
Sbjct: 271 NVGSNQI 277
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 118/241 (48%), Gaps = 34/241 (14%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 96 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 148
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
GL L+ LN + N +TD +KPL+ LT L+ L IS +KV+D + E
Sbjct: 149 GLTSLQQLN--FGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 197
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
T + ++ LG +L L+LN QL D G + + +L L+L N+I++ L
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 253
Query: 270 VHLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L GLT L L L + I + L LT LTNLE +++ L ++ +S+LK+
Sbjct: 254 APLSGLTKLTELKLGANQISNISPLAGLTALTNLE--------LNENQLEDISPISNLKN 305
Query: 329 L 329
L
Sbjct: 306 L 306
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 227 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L +KV+D
Sbjct: 287 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFYNNKVSD 340
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 118/241 (48%), Gaps = 34/241 (14%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 96 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 148
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
GL L+ LN + N +TD +KPL+ LT L+ L IS +KV+D + E
Sbjct: 149 GLTSLQQLN--FGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 197
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
T + ++ LG +L L+LN QL D G + + +L L+L N+I++ L
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 253
Query: 270 VHLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L GLT L L L + I + L LT LTNLE +++ L ++ +S+LK+
Sbjct: 254 APLSGLTKLTELKLGANQISNISPLAGLTALTNLE--------LNENQLEDISPISNLKN 305
Query: 329 L 329
L
Sbjct: 306 L 306
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 227 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L S +KV+D
Sbjct: 287 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFSNNKVSD 340
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 117/241 (48%), Gaps = 34/241 (14%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 101 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 153
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
GL L+ L + N +TD +KPL+ LT L+ L IS +KV+D + E
Sbjct: 154 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 202
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
T + ++ LG +L L+LN QL D G + + +L L+L N+I++ L
Sbjct: 203 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 258
Query: 270 VHLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L GLT L L L + I + L LT LTNLE +++ L ++ +S+LK+
Sbjct: 259 APLSGLTKLTELKLGANQISNISPLAGLTALTNLE--------LNENQLEDISPISNLKN 310
Query: 329 L 329
L
Sbjct: 311 L 311
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 291
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L +KV+D
Sbjct: 292 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFYNNKVSD 345
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 117/241 (48%), Gaps = 34/241 (14%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 100 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 152
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
GL L+ L + N +TD +KPL+ LT L+ L IS +KV+D + E
Sbjct: 153 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 201
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
T + ++ LG +L L+LN QL D G + + +L L+L N+I++ L
Sbjct: 202 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 257
Query: 270 VHLKGLTNLESLNLDSCGIGD-EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L GLT L L L + I + L LT LTNLE +++ L ++ +S+LK+
Sbjct: 258 APLSGLTKLTELKLGANQISNISPLAGLTALTNLE--------LNENQLEDISPISNLKN 309
Query: 329 L 329
L
Sbjct: 310 L 310
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 231 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 290
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L + +KV+D
Sbjct: 291 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFANNKVSD 344
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 43/247 (17%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD--------------- 165
Query: 210 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L L+ L +L L+++ ++SD +K+ +L+ L N+I+D +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L LTNL+ L+L+ + D G L LTNL ++L+ IS+ L L+GL+ L L
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTKLTEL 266
Query: 330 NLDARQI 336
L A QI
Sbjct: 267 KLGANQI 273
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 113/259 (43%), Gaps = 48/259 (18%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLV 134
LK +NL +L+ + IS + + L+ LT+L NN I+ + L NL
Sbjct: 166 LKPLANLTTLE---RLDISSNKVSDISVLAKLTNLESLIATNNQIS--DITPLGILTNLD 220
Query: 135 KLDLE-RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L L + G L +L L L+ N N I S++ PLSGLT L L++ ++++
Sbjct: 221 ELSLNGNQLKDIGTLASLTNLTDLDLAN----NQI--SNLAPLSGLTKLTELKLGANQIS 274
Query: 194 DSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
+ + L+ L +L L LN QL D S + +
Sbjct: 275 N--------------------------ISPLAGLTALTNLELNENQLED--ISPISNLKN 306
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313
L L L FN I+D + + LT L+ L + + D + +L LTN+ ++ IS
Sbjct: 307 LTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQIS 362
Query: 314 DGSLRKLAGLSSLKSLNLD 332
D L LA L+ + L L+
Sbjct: 363 D--LTPLANLTRITQLGLN 379
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 43/247 (17%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD--------------- 165
Query: 210 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L L+ L +L L+++ ++SD +K+ +L+ L N+I+D +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L LTNL+ L+L+ + D G L LTNL ++L+ IS+ L L+GL+ L L
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTKLTEL 266
Query: 330 NLDARQI 336
L A QI
Sbjct: 267 KLGANQI 273
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 118/298 (39%), Gaps = 85/298 (28%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK+ +NL L+ + ISD + L GL++L LSF N +K A L L +L
Sbjct: 125 LKNLTNLNRLELS-SNTISD--ISALSGLTSLQQLSFSSNQVT---DLKPLANLTTLERL 178
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-------------------------- 170
D+ ++ V L L LESL I N I+D
Sbjct: 179 DIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 235
Query: 171 ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGC 214
S++ PLSGLT L L++ +++++
Sbjct: 236 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN-------------------- 275
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ L+ L +L L LN QL D S + +L L L FN I+D + +
Sbjct: 276 ------ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSS 325
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
LT L+ L + + D + +L LTN+ ++ ISD L LA L+ + L L+
Sbjct: 326 LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLN 379
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 43/247 (17%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD--------------- 165
Query: 210 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L L+ L +L L+++ ++SD +K+ +L+ L N+I+D +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L LTNL+ L+L+ + D G L LTNL ++L+ IS+ L L+GL+ L L
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN--LAPLSGLTKLTEL 266
Query: 330 NLDARQI 336
L A QI
Sbjct: 267 KLGANQI 273
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L S +KV+D
Sbjct: 288 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFSNNKVSD 341
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ L+ L LG N+ITD + L LT L++L+L+ I D +V L GLT L+++ LS
Sbjct: 130 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKN 185
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 186 HISD--LRALAGLKNLDVLELFSQE 208
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 91/188 (48%), Gaps = 31/188 (16%)
Query: 170 DSDMKPLSG---LTNLKSLQISCSKVTD-SGIAYXXXXXXXXXXXXEGCPVTAACLDSLS 225
+SD+K + G L NL SL +S +++TD S I Y + + L +L
Sbjct: 53 NSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKP--LANLK 110
Query: 226 ALGSLFYLNLNRCQL---------------SDDGCEKFS---KIGSLKVLNLGFNEITDE 267
LG LF L+ N+ + +G + + L+ L LG N+ITD
Sbjct: 111 NLGWLF-LDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD- 168
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
+ L LT L++L+L+ I D +V L GLT L+++ LS ISD LR LAGL +L
Sbjct: 169 -ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLD 223
Query: 328 SLNLDARQ 335
L L +++
Sbjct: 224 VLELFSQE 231
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ L+ L LG N+ITD + L LT L++L+L+ I D +V L GLT L+++ LS
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKN 188
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 189 HISD--LRALAGLKNLDVLELFSQE 211
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ L+ L LG N+ITD + L LT L++L+L+ I D +V L GLT L+++ LS
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKN 186
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 187 HISD--LRALAGLKNLDVLELFSQE 209
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ L+ L LG N+ITD + L LT L++L+L+ I D +V L GLT L+++ LS
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKN 188
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 189 HISD--LRALAGLKNLDVLELFSQE 211
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ L+ L LG N+ITD + L LT L++L+L+ I D +V L GLT L+++ LS
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKN 206
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 207 HISD--LRALAGLKNLDVLELFSQE 229
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ L+ L LG N+ITD + L LT L++L+L+ I D +V L GLT L+++ LS
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKN 206
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 207 HISD--LRALAGLKNLDVLELFSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ L+ L LG N+ITD + L LT L++L+L+ I D +V L GLT L+++ LS
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKN 206
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 207 HISD--LRALAGLKNLDVLELFSQE 229
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310
+ L+ L LG N+ITD + L LT L++L+L+ I D +V L GLT L+++ LS
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKN 183
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 184 HISD--LRALAGLKNLDVLELFSQE 206
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 32/165 (19%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 283 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 340
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
M+ P +GL NLK L +S S + + T
Sbjct: 341 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 381
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
SL A L LNL + ++S + FS +G L+VL+LG NEI E
Sbjct: 382 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 425
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 32/165 (19%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 335
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
M+ P +GL NLK L +S S + + T
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 376
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
SL A L LNL + ++S + FS +G L+VL+LG NEI E
Sbjct: 377 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 32/165 (19%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 288 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 345
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
M+ P +GL NLK L +S S + + T
Sbjct: 346 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 386
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
SL A L LNL + ++S + FS +G L+VL+LG NEI E
Sbjct: 387 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 430
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 49/227 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHG---GLVNLKGLMKLESL---NIKWCNCITD 170
A +K AG N+ + DL+ T + G+ ++G+ L +L +K N ITD
Sbjct: 19 ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELK-DNQITD 77
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSL 230
+ PL LT + L++S G P+ + +++ L S+
Sbjct: 78 --LAPLKNLTKITELELS------------------------GNPL--KNVSAIAGLQSI 109
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L+L Q++D + + +L+VL L N+IT+ + L GLTNL+ L++ + + D
Sbjct: 110 KTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSD 165
Query: 291 -EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L NL+ LT L++ + ISD + LA L +L ++L QI
Sbjct: 166 LTPLANLSKLTTLKADD---NKISD--ISPLASLPNLIEVHLKNNQI 207
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D L L+ L+ +T L N + + A AGL ++ LDL T+I + L
Sbjct: 74 QITD--LAPLKNLTKITELELSGN---PLKNVSAIAGLQSIKTLDL-TSTQITD-VTPLA 126
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
GL L+ L + N IT+ + PL+GLTNL+ L I ++V+D
Sbjct: 127 GLSNLQVLYLD-LNQITN--ISPLAGLTNLQYLSIGNAQVSD 165
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 37/198 (18%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL-- 133
+ D + L++L +++S L+++ ++ L S+ + + AGL NL
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+ LDL + T I L GL L+ L+I SD+ PL+ L+ L +L+ +K++
Sbjct: 134 LYLDLNQITNISP----LAGLTNLQYLSIGNAQV---SDLTPLANLSKLTTLKADDNKIS 186
Query: 194 DSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
D + L++L +L ++L Q+SD + +
Sbjct: 187 D--------------------------ISPLASLPNLIEVHLKNNQISD--VSPLANTSN 218
Query: 254 LKVLNLGFNEITDECLVH 271
L ++ L IT++ + +
Sbjct: 219 LFIVTLTNQTITNQPVFY 236
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 12/183 (6%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL---ERCTRIH 145
N+ I G E+L L L + RNN I + AF + +L++LDL ++ I
Sbjct: 133 NWLTVIPSGAFEYLSKLREL----WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXX 205
G +GL L+ LN+ CN DM L+ L L+ L++S + +
Sbjct: 189 EGA--FEGLFNLKYLNLGMCNI---KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243
Query: 206 XXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
V+ ++ L SL LNL LS + F+ + L L+L N
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
Query: 266 DEC 268
+C
Sbjct: 304 CDC 306
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 248 FSKIGSLKVLNLG----FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303
F+++ SL L+LG I++ +GL NL+ LNL C I D + NLT L LE
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAF---EGLFNLKYLNLGMCNIKD--MPNLTPLVGLE 221
Query: 304 SINLS---FTGISDGSLRKLAGLSSLKSLNLDARQI 336
+ +S F I GS GLSSLK L + Q+
Sbjct: 222 ELEMSGNHFPEIRPGSFH---GLSSLKKLWVMNSQV 254
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 15/209 (7%)
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N ++A AF L NL L L R I G+ GL L L+I + D
Sbjct: 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV--FTGLSNLTKLDISENKIVILLDYM 123
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLN 234
L NLKSL++ + + E C +T+ ++LS L L L
Sbjct: 124 -FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L ++ F ++ LKVL + + +T CL L NL SL++ C +
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL----NLTSLSITHCNLTA 238
Query: 291 EGLVNLTGLTNLESINLSFTGIS--DGSL 317
+ + L L +NLS+ IS +GS+
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSM 267
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 34/238 (14%)
Query: 77 LKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L+ NLQ+LD + I+ SD L+ LS+L +L+ N + Q +AF L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQS-QAFKECPQLEL 401
Query: 136 LDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
LDL TR+H + L L+ LN+ +C + S+ L+GL L+ L + +
Sbjct: 402 LDL-AFTRLHINAPQSPFQNLHFLQVLNLTYC-FLDTSNQHLLAGLPVLRHLNLKGNHFQ 459
Query: 194 DSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
D I + L +GSL L L+ C L + F +G
Sbjct: 460 DGTITKT---------------------NLLQTVGSLEVLILSSCGLLSIDQQAFHSLGK 498
Query: 254 LKVLNLGFNEIT---DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308
+ ++L N +T + L HLKG+ LNL + I L L+ +INLS
Sbjct: 499 MSHVDLSHNSLTCDSIDSLSHLKGIY----LNLAANSINIISPRLLPILSQQSTINLS 552
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 248 FSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN 306
F+++ SL+ L+LG + +GL NL LNL C + D + NLT L LE +
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD--IPNLTALVRLEELE 184
Query: 307 LS---FTGISDGSLRKLAGLSSLKSLNLDARQI 336
LS I GS + GL+SL+ L L Q+
Sbjct: 185 LSGNRLDLIRPGSFQ---GLTSLRKLWLMHAQV 214
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 248 FSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN 306
F+++ SL+ L+LG + +GL NL LNL C + D + NLT L LE +
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD--IPNLTALVRLEELE 184
Query: 307 LS---FTGISDGSLRKLAGLSSLKSLNLDARQI 336
LS I GS + GL+SL+ L L Q+
Sbjct: 185 LSGNRLDLIRPGSFQ---GLTSLRKLWLMHAQV 214
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 77/195 (39%), Gaps = 34/195 (17%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
+NL LD ++ + D G L +L LS NN I ++F GL NL L L+
Sbjct: 247 WTNLTQLDLSYN-NLHDVGNGSFSYLPSLRYLSLEYNN-IQRLSPRSFYGLSNLRYLSLK 304
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWC----------NCITDSDMKPLSGLTNLKSLQISC 189
R V+L ++ + +W N I + +GL +LK L +S
Sbjct: 305 RAFTKQS--VSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSK 362
Query: 190 SKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+ + + T SL A L LNL + +S FS
Sbjct: 363 TFTSLQTL-------------------TNETFVSL-AHSPLLTLNLTKNHISKIANGTFS 402
Query: 250 KIGSLKVLNLGFNEI 264
+G L++L+LG NEI
Sbjct: 403 WLGQLRILDLGLNEI 417
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL--GFNEITDECLVH-------LK 273
S S L SL YL+L + F + +L+ L+L F + + H +
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQ 326
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS--FTGISDGSLRKLAGL--SSLKSL 329
L LE LN+D I TGL +L+ ++LS FT + + L S L +L
Sbjct: 327 WLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTL 386
Query: 330 NLDARQI 336
NL I
Sbjct: 387 NLTKNHI 393
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 223 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
S + + SL L L R L D F + +L +L+L N I + L+GL NLE
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEI 508
Query: 281 LNLDSCGIG-------DEGLVN-LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L+ + G VN L GL++L +NL G+ + + L LKS+
Sbjct: 509 LDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSI 565
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D L L+ L+ +T L N + + A AGL ++ LDL T+I ++
Sbjct: 80 QITD--LTPLKNLTKITELELSGN---PLKNVSAIAGLQSIKTLDL-TSTQI----TDVT 129
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L L +L + + + +++ PL+GLTNL+ L I ++V D
Sbjct: 130 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVND 171
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN-LSF 309
I +L N G I E + +L L LE + D + +LT L NL I L
Sbjct: 49 IATLSAFNTGVTTI--EGIQYLNNLIGLE--------LKDNQITDLTPLKNLTKITELEL 98
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQI 336
+G ++ +AGL S+K+L+L + QI
Sbjct: 99 SGNPLKNVSAIAGLQSIKTLDLTSTQI 125
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
F + LKVLNL +N+I GL NL+ LNL +G+ N GL + I+L
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 308 SFTGISDGSLRKLAGLSSLKSLNL 331
I+ + L L++L+L
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDL 369
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 6/156 (3%)
Query: 177 SGLTN-LKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNL 235
SGLT +KSL +S +K+T G + + D+ +LGSL +L+L
Sbjct: 22 SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDE--- 291
+ LS F + SLK LNL N + L LTNL++L + + E
Sbjct: 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141
Query: 292 -GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
LT L LE LS SL+ + + L
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 6/156 (3%)
Query: 177 SGLTN-LKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNL 235
SGLT +KSL +S +K+T G + + D+ +LGSL +L+L
Sbjct: 48 SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 107
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDE--- 291
+ LS F + SLK LNL N + L LTNL++L + + E
Sbjct: 108 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 167
Query: 292 -GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326
LT L LE LS SL+ + + L
Sbjct: 168 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 203
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 39/89 (43%)
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307
FS L+ L L NEI GLT+L LNL +G L LE ++L
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQI 336
S+ I + GL +LK L LD Q+
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQL 383
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 21/122 (17%)
Query: 228 GSLFYLN-LNRCQLSDDGCEK-----FSKIGSLKVLNLG----FNEITDECLVHLKGLTN 277
G+ YL+ L L ++ E F++I SL+ L+LG + I++ +GL+N
Sbjct: 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF---EGLSN 186
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDAR 334
L LNL C + + + NLT L L+ ++LS + I GS + GL L+ L +
Sbjct: 187 LRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQ---GLMHLQKLWMIQS 241
Query: 335 QI 336
QI
Sbjct: 242 QI 243
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 81 SNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+NL +L+ N I +G +L L L + RNN I + AF + +L +LDL
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKEL----WLRNNPIESIPSYAFNRIPSLRRLDL 167
Query: 139 ---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+R + I G +GL L LN+ CN ++ PL L L
Sbjct: 168 GELKRLSYISEGA--FEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 212
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
N GL +LE L+ + N S+ L NL L IS + +
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 210 XXEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
G L D + L +L +L+L++CQL F+ + SL+VLN+ N++
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL---GFNEITDECLV-HLKGLTN 277
DS S+LGSL +L+L+ LS+ F + SL LNL + + + L HL L
Sbjct: 68 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 127
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L N+D+ + GLT LE + + + + + L + ++ L L +Q
Sbjct: 128 LRVGNMDTFTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 183
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
++K L+L N IT L+ NL++L L S GI + + L +LE ++LS+ +
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 313 SDGSLRKLAGLSSLKSLNL 331
S+ S LSSL LNL
Sbjct: 87 SNLSSSWFKPLSSLTFLNL 105
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
N GL +LE L+ + N S+ L NL L IS + +
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 210 XXEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
G L D + L +L +L+L++CQL F+ + SL+VLN+ N
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 10/139 (7%)
Query: 129 GLINLVKLDLERCTRIHGGLV----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G I+L LDL G++ N GL +LE L+ + N S+ L NL
Sbjct: 395 GTISLKYLDLS-----FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449
Query: 185 LQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDD 243
L IS + + G L D + L +L +L+L++CQL
Sbjct: 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 244 GCEKFSKIGSLKVLNLGFN 262
F+ + SL+VLN+ N
Sbjct: 510 SPTAFNSLSSLQVLNMSHN 528
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL---GFNEITDECLV-HLKGLTN 277
DS S+LGSL +L+L+ LS+ F + SL LNL + + + L HL L
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Query: 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L N+D+ + GLT LE + + + + + L + ++ L L +Q
Sbjct: 154 LRVGNMDTFTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGI 312
++K L+L N IT L+ NL++L L S GI + + L +LE ++LS+ +
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 313 SDGSLRKLAGLSSLKSLNL 331
S+ S LSSL LNL
Sbjct: 113 SNLSSSWFKPLSSLTFLNL 131
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 34/185 (18%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXX 210
++G+ L ++ + N +D+KPL+ L NL L + +KV D
Sbjct: 59 VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 118
Query: 211 XEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
G +S + L +L L+ L LG N+ITD +
Sbjct: 119 HNG----------ISDINGLVHL------------------PQLESLYLGNNKITDITV- 149
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L LT L++L+L+ I +V L LT L+++ LS ISD LR L GL +L L
Sbjct: 150 -LSRLTKLDTLSLEDNQI--RRIVPLARLTKLQNLYLSKNHISD--LRALRGLKNLDVLE 204
Query: 331 LDARQ 335
L +++
Sbjct: 205 LFSQE 209
>pdb|3E2J|A Chain A, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|B Chain B, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|C Chain C, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|D Chain D, Crystal Structure Of Bovine Coupling Factor B
Length = 176
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-----ISCSKVTDSGI 197
G +++GL +E + + C+ I D ++ LS L NL+ ISC VTD GI
Sbjct: 77 GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132
>pdb|3DZE|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Cadmium
pdb|3E3Z|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Phenylarsine Oxide
pdb|3E4G|A Chain A, Crystal Structure Of Bovine Coupling Factor B, G28e Mutant
Length = 176
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-----ISCSKVTDSGI 197
G +++GL +E + + C+ I D ++ LS L NL+ ISC VTD GI
Sbjct: 77 GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL---SFTGISDGSLRKLAGLSSL 326
+GL +L +L+LD CG+ + G GL L+ + L + + D + R L L+ L
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSL 317
NLG +TD LV K L+ +++ N D+ I + L + TNL+ ++LS ISD L
Sbjct: 25 NLGKQSVTD--LVSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQISD--L 78
Query: 318 RKLAGLSSLKSLNLDARQI 336
L L+ L+ L+++ ++
Sbjct: 79 SPLKDLTKLEELSVNRNRL 97
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
AL SL YL+L+R LS GC +S +G SL+ L+L FN + GL L+ L+
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDF 406
Query: 284 DSCGIGDEGLVNLTGLTNLES---INLSFTGIS---DGSLRKLAGLSSLK 327
+ + + + +LE +++S+T DG L L++LK
Sbjct: 407 QHSTL--KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
AL SL YL+L+R LS GC +S +G SL+ L+L FN + GL L+ L+
Sbjct: 343 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDF 401
Query: 284 DSCGIGDEGLVNLTGLTNLES---INLSFTGIS---DGSLRKLAGLSSLK 327
+ + + + +LE +++S+T DG L L++LK
Sbjct: 402 QHSTL--KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 449
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ C++L S+D + ++ + G RG ++L++++F ++ G AF G INL K+
Sbjct: 316 FESCTSLVSIDLPYLVE--EIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKV 371
Query: 137 DLER 140
+L +
Sbjct: 372 ELPK 375
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 30/143 (20%)
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGC 214
+KLE+ I NC D+ ++ +L+ L +S +K+ ++GIA
Sbjct: 200 LKLENCGITAANCKDLCDV--VASKASLQELDLSSNKLGNAGIA---------------- 241
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDE--- 267
A C L L L L C ++ +GC+ ++ SLK L+L NE+ DE
Sbjct: 242 ---ALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNELKDEGAR 298
Query: 268 --CLVHLKGLTNLESLNLDSCGI 288
C L+ LESL + +C +
Sbjct: 299 LLCESLLEPGCQLESLWIKTCSL 321
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
N GL +LE L+ + N S+ L NL L IS + +
Sbjct: 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155
Query: 210 XXEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
G L D + L +L +L+L++CQL F+ + SL+VLN+ N
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 248 FSKIGSLKVLNLGFN---EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
F+ + L+ L+L N D H GL L +L+LD CG+ + G GL L+
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 305 INL---SFTGISDGSLRKLAGLSSL 326
+ L + + D + R L L+ L
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHL 158
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 248 FSKIGSLKVLNLGFN---EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLES 304
F+ + L+ L+L N D H GL L +L+LD CG+ + G GL L+
Sbjct: 75 FTGLALLEQLDLSDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQY 132
Query: 305 INL---SFTGISDGSLRKLAGLSSL 326
+ L + + D + R L L+ L
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHL 157
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 227 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 283
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 227
Query: 284 DSCGIGD 290
D + D
Sbjct: 228 DGNSLSD 234
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 30/205 (14%)
Query: 77 LKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L+ NLQ LD + I+ SD L+ L +L L+ N + + +AF L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLED-QAFKECPQLEL 403
Query: 136 LDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
LD+ T +H + + L L LN+ C + S+ L+GL +L+ L + +
Sbjct: 404 LDVA-FTHLHVKAPHSPFQNLHLLRVLNLSHC-LLDTSNQHLLAGLQDLRHLNLQGNSFQ 461
Query: 194 DSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
D I+ + L +GSL L L+ C L + F + +
Sbjct: 462 DGSISKT---------------------NLLQMVGSLEILILSSCNLLSIDQQAFHGLRN 500
Query: 254 LKVLNLGFNEITD---ECLVHLKGL 275
+ L+L N +T + L HLKGL
Sbjct: 501 VNHLDLSHNSLTGDSMDALSHLKGL 525
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
Length = 197
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
+ GLSNL L + +T+ + +GL +L LD+ L + L K+ S++
Sbjct: 84 ISGLSNLERLRIXGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ + IT D+ PL L LKSL I V D
Sbjct: 143 LSYNGAIT--DIXPLKTLPELKSLNIQFDGVHD 173
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLE-SLNIK--WCNCITDSDMKPLSGLTNLKSLQIS 188
N+ + T I +N+ L +E + NIK N I ++ P+SGL+NL+ L+I
Sbjct: 37 NITEAQXNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIX 96
Query: 189 CSKVTDSGIA 198
VT I
Sbjct: 97 GKDVTSDKIP 106
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 227 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 283
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 227
Query: 284 DSCGIGD 290
D + D
Sbjct: 228 DGNSLCD 234
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 97/251 (38%), Gaps = 38/251 (15%)
Query: 91 CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGG 147
+Q SD GLE + + L T+L +NN IT F L NL L L + ++I G
Sbjct: 35 VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 94
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXX 207
L+KLE L + N + + K L L+ + +KV S
Sbjct: 95 A--FAPLVKLERLYLSK-NQLKELPEKMPKTLQELRVHENEITKVRKS------------ 139
Query: 208 XXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
+ L + + L L G E + G K L + I D
Sbjct: 140 ---------------VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK---LSYIRIADT 181
Query: 268 CLVHL-KGLT-NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
+ + +GL +L L+LD I +L GL NL + LSF IS LA
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 326 LKSLNLDARQI 336
L+ L+L+ ++
Sbjct: 242 LRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 97/251 (38%), Gaps = 38/251 (15%)
Query: 91 CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGG 147
+Q SD GLE + + L T+L +NN IT F L NL L L + ++I G
Sbjct: 35 VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 94
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXX 207
L+KLE L + N + + K L L+ + +KV S
Sbjct: 95 A--FAPLVKLERLYLSK-NQLKELPEKMPKTLQELRVHENEITKVRKS------------ 139
Query: 208 XXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
+ L + + L L G E + G K L + I D
Sbjct: 140 ---------------VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK---LSYIRIADT 181
Query: 268 CLVHL-KGLT-NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSS 325
+ + +GL +L L+LD I +L GL NL + LSF IS LA
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 326 LKSLNLDARQI 336
L+ L+L+ ++
Sbjct: 242 LRELHLNNNKL 252
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 227 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 283
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 163 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 221
Query: 284 DSCGIGD 290
D + D
Sbjct: 222 DGNSLCD 228
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 227 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 283
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 227
Query: 284 DSCGIGD 290
D + D
Sbjct: 228 DGNSLCD 234
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 423 LVSLNVSNSRITS-AGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLV 474
L LN+S ++I + + LK L+NL+SL L +C+VT ND + + LP L
Sbjct: 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 227 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 283
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 163 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 221
Query: 284 DSCGIGD 290
D + D
Sbjct: 222 DGNSLCD 228
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 33/144 (22%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLT----NLKSLQISCSKVTDSGIAYXXXXXXXXXXXX 211
+LE+L ++ C +T + + L G+ +L+ L + +K+ D G+A
Sbjct: 200 QLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA------------- 245
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDE 267
E CP L S L +L+ C ++ GC ++ SLK L+L NE+ DE
Sbjct: 246 ELCP---GLLHPSSRLRTLWIWE---CGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299
Query: 268 -----CLVHLKGLTNLESLNLDSC 286
C L+ LESL + SC
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSC 323
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,830,785
Number of Sequences: 62578
Number of extensions: 355325
Number of successful extensions: 1165
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 282
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)