Query 011708
Match_columns 479
No_of_seqs 320 out of 2838
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 04:21:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.1E-40 6.7E-45 344.4 19.6 418 53-478 114-578 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.5E-40 1.4E-44 342.0 19.6 399 56-459 139-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.7E-35 3.7E-40 264.4 2.7 389 59-453 54-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 5.5E-35 1.2E-39 261.1 3.1 369 56-430 77-448 (873)
5 KOG0444 Cytoskeletal regulator 99.9 3.4E-27 7.4E-32 213.6 -3.0 366 56-434 6-375 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 3.2E-27 6.9E-32 213.8 -5.3 367 78-456 4-373 (1255)
7 KOG0618 Serine/threonine phosp 99.9 1.6E-26 3.5E-31 218.0 -3.8 381 56-456 44-487 (1081)
8 KOG0472 Leucine-rich repeat pr 99.9 1.7E-26 3.7E-31 198.0 -5.7 390 59-465 93-548 (565)
9 KOG0472 Leucine-rich repeat pr 99.9 1.3E-25 2.9E-30 192.6 -8.0 401 59-478 47-535 (565)
10 KOG0618 Serine/threonine phosp 99.9 4.7E-24 1E-28 201.6 0.6 415 25-459 38-514 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.5E-21 3.3E-26 204.4 17.9 340 75-432 552-904 (1153)
12 PLN03210 Resistant to P. syrin 99.8 2E-20 4.3E-25 196.1 16.5 342 98-456 550-904 (1153)
13 cd00116 LRR_RI Leucine-rich re 99.8 1.4E-18 3E-23 159.0 24.3 254 202-456 21-318 (319)
14 cd00116 LRR_RI Leucine-rich re 99.8 5.2E-18 1.1E-22 155.2 24.1 256 177-433 20-319 (319)
15 KOG4237 Extracellular matrix p 99.8 1.7E-21 3.6E-26 167.2 -6.2 278 55-334 65-356 (498)
16 KOG4237 Extracellular matrix p 99.7 2.7E-19 5.9E-24 153.8 -1.0 276 156-433 68-358 (498)
17 PRK15387 E3 ubiquitin-protein 99.6 8.8E-15 1.9E-19 143.1 12.2 264 132-441 202-465 (788)
18 PRK15387 E3 ubiquitin-protein 99.6 8.5E-15 1.8E-19 143.2 10.7 265 155-465 201-465 (788)
19 KOG4341 F-box protein containi 99.6 5.3E-15 1.1E-19 128.7 7.4 297 156-476 139-457 (483)
20 KOG4341 F-box protein containi 99.6 5.5E-15 1.2E-19 128.6 7.2 357 1-357 74-461 (483)
21 KOG1909 Ran GTPase-activating 99.5 9.7E-14 2.1E-18 118.3 12.1 134 299-433 156-310 (382)
22 KOG1909 Ran GTPase-activating 99.5 6.6E-13 1.4E-17 113.3 13.7 250 199-466 25-321 (382)
23 PRK15370 E3 ubiquitin-protein 99.5 9.9E-14 2.1E-18 136.6 9.5 248 156-435 179-429 (754)
24 KOG2120 SCF ubiquitin ligase, 99.4 1.3E-13 2.7E-18 114.9 6.1 264 1-286 100-373 (419)
25 PRK15370 E3 ubiquitin-protein 99.4 6.3E-13 1.4E-17 131.1 11.6 203 180-406 220-425 (754)
26 KOG2120 SCF ubiquitin ligase, 99.4 1.5E-12 3.3E-17 108.6 7.7 197 277-475 186-391 (419)
27 KOG4658 Apoptotic ATPase [Sign 99.3 1.9E-13 4.1E-18 136.9 1.4 206 2-212 451-676 (889)
28 KOG3207 Beta-tubulin folding c 99.3 3.9E-13 8.4E-18 118.0 1.5 209 250-459 119-340 (505)
29 KOG3207 Beta-tubulin folding c 99.1 1.7E-11 3.6E-16 107.9 2.8 208 56-265 120-339 (505)
30 PF14580 LRR_9: Leucine-rich r 99.1 2.1E-11 4.5E-16 97.6 2.3 126 322-452 17-147 (175)
31 KOG4658 Apoptotic ATPase [Sign 99.1 2.4E-11 5.3E-16 121.9 2.3 249 55-310 543-804 (889)
32 KOG0617 Ras suppressor protein 99.1 7.8E-13 1.7E-17 101.2 -7.6 158 275-438 32-190 (264)
33 COG5238 RNA1 Ran GTPase-activa 99.1 9.5E-10 2.1E-14 91.0 9.4 188 248-435 88-317 (388)
34 KOG0617 Ras suppressor protein 99.1 2E-12 4.4E-17 98.9 -5.9 17 248-264 169-185 (264)
35 PF14580 LRR_9: Leucine-rich r 99.0 1.6E-10 3.4E-15 92.7 2.3 102 301-406 20-123 (175)
36 KOG1259 Nischarin, modulator o 98.9 2.2E-10 4.7E-15 96.1 0.9 130 322-458 282-412 (490)
37 KOG1259 Nischarin, modulator o 98.8 2E-09 4.3E-14 90.5 2.3 226 103-338 179-413 (490)
38 COG5238 RNA1 Ran GTPase-activa 98.8 1.7E-07 3.6E-12 78.0 12.6 230 246-476 24-308 (388)
39 KOG3665 ZYG-1-like serine/thre 98.7 1.2E-07 2.5E-12 93.4 10.0 203 249-454 57-284 (699)
40 PF13855 LRR_8: Leucine rich r 98.6 4.3E-09 9.3E-14 69.2 -0.7 61 396-457 1-61 (61)
41 KOG3665 ZYG-1-like serine/thre 98.6 1.1E-07 2.5E-12 93.4 8.3 152 276-430 122-284 (699)
42 KOG2982 Uncharacterized conser 98.5 5.4E-08 1.2E-12 81.9 2.9 82 369-451 196-285 (418)
43 PF13855 LRR_8: Leucine rich r 98.5 2E-08 4.3E-13 66.0 0.1 59 348-406 1-59 (61)
44 PLN03150 hypothetical protein; 98.4 3.7E-07 8.1E-12 90.2 5.8 105 350-455 420-525 (623)
45 KOG1947 Leucine rich repeat pr 98.4 1.4E-06 3E-11 84.9 9.5 108 203-310 187-305 (482)
46 KOG2982 Uncharacterized conser 98.3 1.4E-07 2.9E-12 79.6 1.2 227 229-477 46-285 (418)
47 KOG1859 Leucine-rich repeat pr 98.3 4.8E-08 1E-12 92.2 -1.6 179 245-434 102-292 (1096)
48 COG4886 Leucine-rich repeat (L 98.3 6.4E-07 1.4E-11 84.4 5.3 197 232-438 97-294 (394)
49 PLN03150 hypothetical protein; 98.3 9.8E-07 2.1E-11 87.3 6.5 106 326-432 420-526 (623)
50 COG4886 Leucine-rich repeat (L 98.3 7.1E-07 1.5E-11 84.1 5.1 198 207-414 96-294 (394)
51 KOG1947 Leucine rich repeat pr 98.3 4E-06 8.6E-11 81.7 10.0 133 225-357 185-330 (482)
52 KOG0531 Protein phosphatase 1, 98.2 6E-08 1.3E-12 91.4 -4.0 242 179-435 71-319 (414)
53 KOG1859 Leucine-rich repeat pr 98.2 9.5E-08 2.1E-12 90.2 -2.9 179 269-457 102-291 (1096)
54 KOG0531 Protein phosphatase 1, 98.2 1.1E-07 2.4E-12 89.6 -2.6 218 226-458 70-290 (414)
55 KOG4579 Leucine-rich repeat (L 98.0 1.5E-06 3.2E-11 64.7 1.1 113 324-439 27-141 (177)
56 KOG0532 Leucine-rich repeat (L 98.0 2.1E-07 4.5E-12 85.5 -5.5 190 256-455 79-270 (722)
57 KOG0532 Leucine-rich repeat (L 97.9 4E-07 8.7E-12 83.7 -4.5 191 183-382 78-270 (722)
58 KOG2123 Uncharacterized conser 97.8 5.6E-06 1.2E-10 69.4 0.2 110 348-464 19-134 (388)
59 KOG4579 Leucine-rich repeat (L 97.8 1.3E-05 2.8E-10 59.8 1.8 103 302-406 29-133 (177)
60 KOG1644 U2-associated snRNP A' 97.7 1.3E-05 2.9E-10 64.0 1.0 107 347-456 41-151 (233)
61 KOG3864 Uncharacterized conser 97.6 5.5E-05 1.2E-09 60.6 3.9 83 350-432 103-187 (221)
62 KOG2123 Uncharacterized conser 97.6 1.4E-05 3.1E-10 67.0 0.5 79 300-382 19-98 (388)
63 KOG3864 Uncharacterized conser 97.6 4E-05 8.7E-10 61.4 2.2 83 58-140 102-185 (221)
64 PF12799 LRR_4: Leucine Rich r 97.5 8.2E-05 1.8E-09 44.4 2.7 36 422-458 2-37 (44)
65 PF13306 LRR_5: Leucine rich r 97.4 2.9E-05 6.3E-10 60.2 -0.0 119 322-447 10-128 (129)
66 PF13306 LRR_5: Leucine rich r 97.4 0.00022 4.7E-09 55.2 4.9 60 76-139 7-66 (129)
67 PF12799 LRR_4: Leucine Rich r 97.4 0.00022 4.7E-09 42.6 3.7 36 349-385 2-37 (44)
68 KOG1644 U2-associated snRNP A' 97.4 0.00011 2.5E-09 58.8 2.9 109 324-435 42-154 (233)
69 KOG2739 Leucine-rich acidic nu 97.1 0.00017 3.6E-09 60.4 1.1 62 201-262 62-126 (260)
70 KOG2739 Leucine-rich acidic nu 97.1 0.00024 5.2E-09 59.6 1.9 36 371-406 90-126 (260)
71 PRK15386 type III secretion pr 96.9 0.0032 7E-08 57.7 7.3 72 77-163 48-120 (426)
72 KOG4308 LRR-containing protein 96.8 0.00034 7.4E-09 66.3 0.7 183 254-437 89-306 (478)
73 PRK15386 type III secretion pr 96.7 0.0028 6E-08 58.1 5.6 57 248-310 48-104 (426)
74 KOG4308 LRR-containing protein 96.6 0.00068 1.5E-08 64.3 0.5 234 230-464 89-366 (478)
75 smart00367 LRR_CC Leucine-rich 94.8 0.033 7.2E-07 28.7 2.3 23 80-102 1-23 (26)
76 PF13516 LRR_6: Leucine Rich r 94.5 0.024 5.2E-07 28.6 1.4 22 444-465 1-22 (24)
77 PF13516 LRR_6: Leucine Rich r 93.4 0.046 1E-06 27.5 1.2 21 421-441 2-22 (24)
78 smart00367 LRR_CC Leucine-rich 93.0 0.15 3.2E-06 26.2 2.8 24 105-128 1-24 (26)
79 PF00560 LRR_1: Leucine Rich R 91.6 0.083 1.8E-06 25.9 0.7 14 422-435 1-14 (22)
80 PF13504 LRR_7: Leucine rich r 89.1 0.26 5.7E-06 22.3 1.2 12 349-360 2-13 (17)
81 smart00368 LRR_RI Leucine rich 87.4 0.55 1.2E-05 24.6 1.9 22 445-466 2-23 (28)
82 smart00369 LRR_TYP Leucine-ric 83.2 0.94 2E-05 23.1 1.6 19 421-439 2-20 (26)
83 smart00370 LRR Leucine-rich re 83.2 0.94 2E-05 23.1 1.6 19 421-439 2-20 (26)
84 KOG3763 mRNA export factor TAP 72.0 4.2 9.2E-05 38.9 3.4 82 369-451 215-307 (585)
85 smart00365 LRR_SD22 Leucine-ri 56.8 7.7 0.00017 19.9 1.2 14 421-434 2-15 (26)
86 KOG0473 Leucine-rich repeat pr 53.1 0.66 1.4E-05 38.9 -4.7 88 344-435 38-125 (326)
87 KOG3763 mRNA export factor TAP 46.8 29 0.00064 33.6 4.2 89 48-137 209-307 (585)
88 KOG4242 Predicted myosin-I-bin 41.4 1.7E+02 0.0037 28.1 8.0 69 397-466 414-489 (553)
89 smart00364 LRR_BAC Leucine-ric 35.8 22 0.00047 18.3 0.9 14 349-362 3-16 (26)
90 KOG0473 Leucine-rich repeat pr 31.9 1.6 3.5E-05 36.7 -5.5 99 318-420 36-134 (326)
91 KOG3735 Tropomodulin and leiom 30.5 69 0.0015 29.0 3.7 18 420-437 254-271 (353)
92 PF07723 LRR_2: Leucine Rich R 25.3 39 0.00085 17.2 0.8 11 447-457 2-12 (26)
93 PF14162 YozD: YozD-like prote 23.3 96 0.0021 18.9 2.2 19 4-22 11-29 (57)
94 PF12937 F-box-like: F-box-lik 21.3 49 0.0011 19.6 0.9 13 1-13 3-15 (47)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.1e-40 Score=344.39 Aligned_cols=418 Identities=22% Similarity=0.243 Sum_probs=210.8
Q ss_pred HhCCCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCC
Q 011708 53 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (479)
Q Consensus 53 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (479)
+..+.+|++|+++++.+++..+ ...+++|++|++++| .+....+..++.+++|++|++++|. +....|..+.++++
T Consensus 114 ~~~l~~L~~L~Ls~n~l~~~~p--~~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~ 189 (968)
T PLN00113 114 FTTSSSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTS 189 (968)
T ss_pred hccCCCCCEEECcCCccccccC--ccccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCc-ccccCChhhhhCcC
Confidence 3355667777777666654322 234556666666653 3333344455556666666666553 23344555555666
Q ss_pred CcEEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEec
Q 011708 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212 (479)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 212 (479)
|++|++++|......+..+.++++|++|+++++. +.+..+..+.++++|++|++++|.+....+..+..+++|+.|+++
T Consensus 190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN-LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred CCeeeccCCCCcCcCChHHcCcCCccEEECcCCc-cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 6666665544333344445555555555555532 222334444555555555555555444444445555555555555
Q ss_pred CCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHH
Q 011708 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292 (479)
Q Consensus 213 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 292 (479)
+|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+....
T Consensus 269 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred CCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence 55444333344444444555555444444433444444444444444444443333333444444444444444333333
Q ss_pred HHHhhCCCCCCeeecc------------------------CCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCC
Q 011708 293 LVNLTGLTNLESINLS------------------------FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348 (479)
Q Consensus 293 ~~~~~~~~~L~~L~l~------------------------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 348 (479)
+..++.+++|+.|+++ +|.+....+..+..+++|+.|++++|.++...+..+..++
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 428 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence 3333333333333333 3333333333344445555555555544433333344444
Q ss_pred CCCEEEccCCCCchhhHHHHhcC-----------------------CCCceeeccCCccChHHHHHHHccCCCCceeccC
Q 011708 349 GLTHLDLFGARITDSGAAYLRNF-----------------------KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405 (479)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~-----------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 405 (479)
.|+.|++++|.+....+..+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 508 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508 (968)
T ss_pred CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcC
Confidence 44444444444443332222233 3455555555555555455555666666666666
Q ss_pred CCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccHHHHHHhhhCCCCccccCCC
Q 011708 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478 (479)
Q Consensus 406 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~p~L~~l~~ 478 (479)
| .+....+..+.++++|+.|++++|.+....+..+..+++|+.|++++|+++......+. .++.|+.+++
T Consensus 509 N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~l~l 578 (968)
T PLN00113 509 N-KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG--NVESLVQVNI 578 (968)
T ss_pred C-cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHh--cCcccCEEec
Confidence 6 55555566666677777777777777666666666777777777777776554333333 4555555543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.5e-40 Score=341.96 Aligned_cols=399 Identities=21% Similarity=0.197 Sum_probs=238.8
Q ss_pred CCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcE
Q 011708 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
.++|++|+++++.+++..+..+..+++|++|++++| .+....+..+.++++|++|++++|. +....|..+.++++|++
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKW 216 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccE
Confidence 456777777766666555556666666777776664 3433444555666666666666653 33344555566666666
Q ss_pred EecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCC
Q 011708 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (479)
|++++|......+..+.++++|++|++++|. +.+..+..+.++++|+.|++++|.+....+..+..+++|++|++++|.
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 6666544333344445555555555555532 222333344444555555554444443333344444444444444444
Q ss_pred C------------------------CHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHH
Q 011708 216 V------------------------TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271 (479)
Q Consensus 216 ~------------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (479)
+ ....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 3 3333333444444444444444444333344444444444444444433322333
Q ss_pred hcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCcee----------------------
Q 011708 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSL---------------------- 329 (479)
Q Consensus 272 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L---------------------- 329 (479)
+..+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 3333333333333333333333444455556666665555544333444444444444
Q ss_pred --ecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCC
Q 011708 330 --NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407 (479)
Q Consensus 330 --~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (479)
++++|.+....+..+ ..++|+.|++++|++....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 456 ~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N- 533 (968)
T PLN00113 456 MLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN- 533 (968)
T ss_pred EEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC-
Confidence 444444332222222 2456778888888877766777888999999999999999888888999999999999999
Q ss_pred CCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccH
Q 011708 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 408 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 459 (479)
.++...+..+..+++|+.|++++|.+....+..+..+++|+.+++++|++..
T Consensus 534 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 7888888899999999999999999998888889999999999999998764
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-35 Score=264.39 Aligned_cols=389 Identities=24% Similarity=0.284 Sum_probs=192.1
Q ss_pred ccEEEecCCCCChhhhhhhccC--CCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 59 LLSVDLSGSDVTDSGLIHLKDC--SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
-+.|+.++..+.......+..+ +.-+.|++++ +++.+..+..|.++++|+++++..|. + ...|.......+|+.|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~Ldlsn-Nkl~~id~~~f~nl~nLq~v~l~~N~-L-t~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSN-NKLSHIDFEFFYNLPNLQEVNLNKNE-L-TRIPRFGHESGHLEKL 130 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccc-cccccCcHHHHhcCCcceeeeeccch-h-hhcccccccccceeEE
Confidence 4455555555543333333332 2334466665 45555555556666666666665552 1 1223222233445666
Q ss_pred ecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCC
Q 011708 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 216 (479)
++.++-........+..++.|+.|+++. +.+.......+..-.++++|++++|+|+......|..+.+|..|.++.|++
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence 6655433333333445555555555554 233333334444444555555555555554444555555555555555555
Q ss_pred CHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHh
Q 011708 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 296 (479)
+......|.++++|+.|++..|.+.....-.|..+++|+.|.+..|.+.......|..+.++++|+++.|++......++
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 55545555555555555555555544433445555555555555554444333344455555555555554444333344
Q ss_pred hCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCce
Q 011708 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376 (479)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 376 (479)
-++..|+.|+++.|.+..........+++|+.|+++.|.++......|..+..|++|.++.|.+.......|..+.+|++
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 44555555555555444444444444555555555555555444444444455555555555554444444444555555
Q ss_pred eeccCCccCh---HHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccc
Q 011708 377 LEICGGGLTD---AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453 (479)
Q Consensus 377 L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 453 (479)
|+++.|.+.. .....+..+++|+.|++.+| ++..+...+|.+++.|+.|++.+|.+..+.+.+|..+ .|++|.+.
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 5555544332 12233444555555555555 4554444555555555555555555555455555544 45554443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-35 Score=261.14 Aligned_cols=369 Identities=23% Similarity=0.258 Sum_probs=304.6
Q ss_pred CCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcE
Q 011708 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
.+..+.|++++|++.+.....|.++++|+.+.+.+ +.++.+ +...+-..+|+.|++.+| .++....+.+..++.|++
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~I-P~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRI-PRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRS 153 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhc-ccccccccceeEEeeecc-ccccccHHHHHhHhhhhh
Confidence 34678899999999888888889999999999988 445442 222334456999999988 466677788888999999
Q ss_pred EecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCC
Q 011708 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (479)
||++.+.........+..-.++++|++.+ +.++......|.++.+|..|.++.|+++...+..|.++++|+.|++..|.
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 99998544333444577778899999998 55666777888888899999999999998888889999999999999887
Q ss_pred CCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHH
Q 011708 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (479)
+.....-.|..+++|+.|.+..|.+.....++|..+.++++|++..|++......++.++..|+.|++++|.+...-...
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 76554456788999999999999988877788889999999999999888777777888999999999999887777777
Q ss_pred hhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchh---hHHHHhcCC
Q 011708 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS---GAAYLRNFK 372 (479)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~ 372 (479)
++-+++|+.|+++.|.++......+..+..|+.|.++.|.+.......|..+++|++|+++.|.+... ....+..++
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP 392 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence 78889999999999988887777888888999999999998888878888889999999999876632 344567799
Q ss_pred CCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCC
Q 011708 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430 (479)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 430 (479)
+|+.|.+.||++....-+.|..++.|++|++.+| -+..+.+.+|..+ .|++|.+..
T Consensus 393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 393 SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhheeecCceeeecchhhhccCcccceecCCCC-cceeecccccccc-hhhhhhhcc
Confidence 9999999999999988889999999999999999 6777888888877 888887753
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=3.4e-27 Score=213.62 Aligned_cols=366 Identities=21% Similarity=0.186 Sum_probs=241.2
Q ss_pred CCCccEEEecCCCCCh-hhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCc
Q 011708 56 GSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (479)
.|.+|-++++++.+++ ..+.....+..++-|.|.. .++.. .++.++.+.+|++|.+.+|... .....++.+|.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~-vPeEL~~lqkLEHLs~~HN~L~--~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQ-VPEELSRLQKLEHLSMAHNQLI--SVHGELSDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhh-ChHHHHHHhhhhhhhhhhhhhH--hhhhhhccchhhH
Confidence 5678888888888874 4455567778888888876 33433 4677788888888888887532 2345566778888
Q ss_pred EEeccccccc-ccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecC
Q 011708 135 KLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (479)
Q Consensus 135 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (479)
.+.++.+..- .+.|..+.++..|..|+++.+. +. ..+..+...+++-.|++++|+|...+-..+.++..|-.|+++.
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhh-hh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 8888776533 3455667777888888887643 22 2455666677777788887777766556667777777778877
Q ss_pred CCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCCh-HHHHHhcCCCCccEEeccCCCCChHH
Q 011708 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEG 292 (479)
Q Consensus 214 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~ 292 (479)
|++... |..+..+..|+.|.+++|.+.......+..+.+|+.|.+++++-+- ..|..+..+.+|..++++.|.+. ..
T Consensus 160 NrLe~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 160 NRLEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred chhhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 776554 4456677777788877776665544555555666777777665432 23444556667777777777554 44
Q ss_pred HHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchh-hHHHHhcC
Q 011708 293 LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNF 371 (479)
Q Consensus 293 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~ 371 (479)
+..+-.+++|+.|++++|.++.... ....+.+|++|+++.|+++..+ .++..+++|+.|.+.+|+++-. .|..++.+
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~LP-~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVLP-DAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccch-HHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 5556667777777777777665322 2345667777777777765533 4455667777777777766543 24556666
Q ss_pred CCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccc
Q 011708 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
.+|+.+...+|.+.-. +..++.|+.|+.|.++.|.-++ .|.++.-++.|+.|++..|+-.
T Consensus 316 ~~Levf~aanN~LElV-PEglcRC~kL~kL~L~~NrLiT--LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLELV-PEGLCRCVKLQKLKLDHNRLIT--LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhHHHHhhccccccC-chhhhhhHHHHHhcccccceee--chhhhhhcCCcceeeccCCcCc
Confidence 6777777776665533 6666777777777777763222 4566666777777777777533
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=3.2e-27 Score=213.79 Aligned_cols=367 Identities=20% Similarity=0.203 Sum_probs=288.8
Q ss_pred ccCCCCCeEeccCCCCCC-hhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcC
Q 011708 78 KDCSNLQSLDFNFCIQIS-DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156 (479)
Q Consensus 78 ~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 156 (479)
+-+|-.|-++++++. +. +.-+.....+..++-|.+..+. -...|+.++.+.+|++|.+.++. +......+..++.
T Consensus 4 gVLpFVrGvDfsgND-Fsg~~FP~~v~qMt~~~WLkLnrt~--L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~ 79 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGND-FSGDRFPHDVEQMTQMTWLKLNRTK--LEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPR 79 (1255)
T ss_pred cccceeecccccCCc-CCCCcCchhHHHhhheeEEEechhh--hhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchh
Confidence 345777888898853 44 4556667788899999998874 34568999999999999999854 4444456778899
Q ss_pred ccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEcc
Q 011708 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236 (479)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 236 (479)
||.+.+..++......+..+..+..|+.|++++|++. ..+..+.+.+++-.|+++.|.+....-..+.++..|-.|+++
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence 9999998866555556677788999999999999887 456778889999999999998887766667788899999999
Q ss_pred CCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCC-hHHHHHhhCCCCCCeeeccCCCCCHH
Q 011708 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLTNLESINLSFTGISDG 315 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~ 315 (479)
+|.+...+ ..+..+.+|++|.+++|.+.......+..+.+|+.|.+++..-+ ...+..+..+.+|..++++.|.++.
T Consensus 159 ~NrLe~LP-PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~- 236 (1255)
T KOG0444|consen 159 NNRLEMLP-PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI- 236 (1255)
T ss_pred cchhhhcC-HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-
Confidence 99876544 45677888999999999876655555667778888888876332 2345566778899999999888765
Q ss_pred HHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChH-HHHHHHc
Q 011708 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKD 394 (479)
Q Consensus 316 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~ 394 (479)
.++.+..+++|+.|++++|.++..... .....+|++|+++.|+++.. |.++..++.|+.|.+.+|+++-. .+..+++
T Consensus 237 vPecly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred chHHHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 567778889999999999988775432 23457899999999998865 55677889999999998876543 3677888
Q ss_pred cCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCcccccccccccc
Q 011708 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456 (479)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 456 (479)
+..|+++..++| ++ +..|+.++.|+.|+.|.++.|.+-. .|+++.-++.|+.|++..|+
T Consensus 315 L~~Levf~aanN-~L-ElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 315 LIQLEVFHAANN-KL-ELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhHHHHhhcc-cc-ccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCc
Confidence 899999999988 44 4778889999999999999998777 45778888999999999985
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1.6e-26 Score=217.96 Aligned_cols=381 Identities=23% Similarity=0.252 Sum_probs=232.7
Q ss_pred CCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcE
Q 011708 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
+-+|++|+++++.+.. .+..+...++|+.|.++. +.+... +.+..++.+|+++.+.++. ....|..+..+++|++
T Consensus 44 ~v~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~-n~i~~v-p~s~~~~~~l~~lnL~~n~--l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISS-FPIQITLLSHLRQLNLSR-NYIRSV-PSSCSNMRNLQYLNLKNNR--LQSLPASISELKNLQY 118 (1081)
T ss_pred eeeeEEeecccccccc-CCchhhhHHHHhhcccch-hhHhhC-chhhhhhhcchhheeccch--hhcCchhHHhhhcccc
Confidence 3458888888887764 334566778888888887 334433 3566778888888888774 3456788888888888
Q ss_pred EecccccccccccccccCCcCccEEeccCC------------------CCCCccccccccCCCCCcEEEccCCccchHhH
Q 011708 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 197 (479)
|+++++ .+...|..+..+..+..+..+++ +.+.+.....+.++++ .|++.+|.+....
T Consensus 119 LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~d- 194 (1081)
T KOG0618|consen 119 LDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLD- 194 (1081)
T ss_pred cccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhh-
Confidence 888874 33333333333333333333322 1111122222233333 4666666555222
Q ss_pred HHhhcCCC--------------------CCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEE
Q 011708 198 AYLKGLQK--------------------LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257 (479)
Q Consensus 198 ~~l~~~~~--------------------L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 257 (479)
+..+.+ ++.|+...|.+..... -..-.+|++++++++.+.... +.+..+.+|+.+
T Consensus 195 --ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l 269 (1081)
T KOG0618|consen 195 --LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLP-EWIGACANLEAL 269 (1081)
T ss_pred --hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcch-HHHHhcccceEe
Confidence 222222 3333333333221100 112236677777776666554 666677777777
Q ss_pred ecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhh----------------
Q 011708 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA---------------- 321 (479)
Q Consensus 258 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---------------- 321 (479)
....|.++ ..+..+....+|+.+....|.+... +......+.|++|++..|.+.......+.
T Consensus 270 ~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l 347 (1081)
T KOG0618|consen 270 NANHNRLV-ALPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL 347 (1081)
T ss_pred cccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc
Confidence 77777664 3344444555566666655544322 23344567777777777655432211111
Q ss_pred ---------CCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHH
Q 011708 322 ---------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392 (479)
Q Consensus 322 ---------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 392 (479)
.++.|+.|.+.+|.+++.....+.++++|+.|++++|++...+...+.+++.|+.|+++||+++..+ ..+
T Consensus 348 ~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tv 426 (1081)
T KOG0618|consen 348 STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTV 426 (1081)
T ss_pred cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHH
Confidence 2345677777777777777777777888888888888888777777788888888888888888764 667
Q ss_pred HccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCcccccccccccc
Q 011708 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456 (479)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 456 (479)
..++.|++|...+| .+.. .| .+.+++.|+.+|++.|.++.........-|+|++|++++|.
T Consensus 427 a~~~~L~tL~ahsN-~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSN-QLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HhhhhhHHHhhcCC-ceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 77888888887777 4442 33 67788888888888888777665444444788888888885
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1.7e-26 Score=197.98 Aligned_cols=390 Identities=19% Similarity=0.209 Sum_probs=206.9
Q ss_pred ccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEec
Q 011708 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (479)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 138 (479)
++.++.+++++. ..+..+...+.++.++++.+ .+.. .+..++.+..|..++..++.. ...|..+..+.+|..+++
T Consensus 93 l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n-~~~e-l~~~i~~~~~l~dl~~~~N~i--~slp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 93 LKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSN-ELKE-LPDSIGRLLDLEDLDATNNQI--SSLPEDMVNLSKLSKLDL 167 (565)
T ss_pred HHHhhcccchHh-hccHHHhhhhhhhhhhcccc-ceee-cCchHHHHhhhhhhhcccccc--ccCchHHHHHHHHHHhhc
Confidence 444555554443 23344445555555555552 2222 223344444444444444432 122444444444444444
Q ss_pred ccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCH
Q 011708 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218 (479)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 218 (479)
.++ .....++...+++.|++++... +.-+..+..++.+.+|..|++..|.+...+ .|.++..|++++++.|.+..
T Consensus 168 ~~n-~l~~l~~~~i~m~~L~~ld~~~--N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~ 242 (565)
T KOG0472|consen 168 EGN-KLKALPENHIAMKRLKHLDCNS--NLLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEM 242 (565)
T ss_pred ccc-chhhCCHHHHHHHHHHhcccch--hhhhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHh
Confidence 442 2222222222344555554432 222234444455555555555555444221 45555555555555555544
Q ss_pred HHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHh--
Q 011708 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-- 296 (479)
Q Consensus 219 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-- 296 (479)
..++...+++++..|++++|++.+. |+.+..+.+|..|++++|.++ ..+..++++ +|+.|.+.|+.+...-...+
T Consensus 243 lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~ 319 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISK 319 (565)
T ss_pred hHHHHhcccccceeeeccccccccC-chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcc
Confidence 4444444556666666666655543 244445555666666665554 233444555 55555555553321110000
Q ss_pred ---------------------------------------hCCCCCCeeeccCCCCCHHHHHHhh--CCCCCceeecCCCC
Q 011708 297 ---------------------------------------TGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDARQ 335 (479)
Q Consensus 297 ---------------------------------------~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~ 335 (479)
......+.|++++-.++....+.|. .-.-.+..+++.|+
T Consensus 320 gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 320 GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch
Confidence 0022334444444433322222111 11223444454444
Q ss_pred CCH-----------------------HHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHH
Q 011708 336 ITD-----------------------TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392 (479)
Q Consensus 336 ~~~-----------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 392 (479)
+.. ..+..+..+++|..|++++|-+.+.+. .++.+..|+.++++.|.+... |..+
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~-e~~~lv~Lq~LnlS~NrFr~l-P~~~ 477 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE-EMGSLVRLQTLNLSFNRFRML-PECL 477 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch-hhhhhhhhheecccccccccc-hHHH
Confidence 322 223344567788888888876665543 445566688888888877665 5555
Q ss_pred HccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccHHHHHHh
Q 011708 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465 (479)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 465 (479)
.....++.+-.++| .+....+..+.++.+|..|++.+|.+..+ |..+++|.+|++|++++|++....-+.+
T Consensus 478 y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr~Pr~~iL 548 (565)
T KOG0472|consen 478 YELQTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFRQPRHQIL 548 (565)
T ss_pred hhHHHHHHHHhccc-cccccChHHhhhhhhcceeccCCCchhhC-ChhhccccceeEEEecCCccCCCHHHHh
Confidence 55566777766666 67777777788999999999999998885 5678999999999999999875544433
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.3e-25 Score=192.55 Aligned_cols=401 Identities=23% Similarity=0.222 Sum_probs=201.0
Q ss_pred ccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEec
Q 011708 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (479)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 138 (479)
++.+.++++.+.. ....+..+..+.+|++.++ +... .+.+++.+..++.++.++++ ....|+.+..+..|..+++
T Consensus 47 l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n-~l~~-lp~aig~l~~l~~l~vs~n~--ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 47 LQKLILSHNDLEV-LREDLKNLACLTVLNVHDN-KLSQ-LPAAIGELEALKSLNVSHNK--LSELPEQIGSLISLVKLDC 121 (565)
T ss_pred hhhhhhccCchhh-ccHhhhcccceeEEEeccc-hhhh-CCHHHHHHHHHHHhhcccch--HhhccHHHhhhhhhhhhhc
Confidence 4455555544432 1223444555555555552 2222 23344444444444544442 1233444444444555544
Q ss_pred ccc----------------------cccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHh
Q 011708 139 ERC----------------------TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196 (479)
Q Consensus 139 ~~~----------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 196 (479)
+.+ ..+...+..+..+.+|..+++.++ .+....+..+ +++.|++++...|-++ ..
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i-~m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHI-AMKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHH-HHHHHHhcccchhhhh-cC
Confidence 442 233333444444444444444442 2221222222 2455555555444333 23
Q ss_pred HHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCC
Q 011708 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276 (479)
Q Consensus 197 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 276 (479)
+..++.+.+|..|++..|++.... .|+.|..|++++++.|.+.-...+....++++..|+++.|++. ..|..+..+.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr 275 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR 275 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence 344555555666666655554432 4556666666666666665554455556777777777777765 3455566667
Q ss_pred CccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHH-----------HHhh------------------------
Q 011708 277 NLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSL-----------RKLA------------------------ 321 (479)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----------~~l~------------------------ 321 (479)
+|..|+++++.++. .+..++++ .|+.|.+.+|.+...-- ..+.
T Consensus 276 sL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~ 353 (565)
T KOG0472|consen 276 SLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE 353 (565)
T ss_pred hhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence 77777777776653 34556666 67777777665432111 1000
Q ss_pred ------CCCCCceeecCCCCCCHHHHHHHh--cCCCCCEEEccCCCCchhh-----------------------HHHHhc
Q 011708 322 ------GLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGARITDSG-----------------------AAYLRN 370 (479)
Q Consensus 322 ------~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~-----------------------~~~~~~ 370 (479)
...+.+.|.+++-+++..+...|. .-.-.+.++++.|++.+.+ +..+..
T Consensus 354 ~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~ 433 (565)
T KOG0472|consen 354 SFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQ 433 (565)
T ss_pred cccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHh
Confidence 012344455555444444444432 1123455566665544322 112233
Q ss_pred CCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCcccccc
Q 011708 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450 (479)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 450 (479)
+++|+.|++++|.+.+. |..++.+.+|+.|++++| .+. ..|..+..+..++.+-.++|.+....++.+..+.+|..|
T Consensus 434 l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~N-rFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFN-RFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred hhcceeeecccchhhhc-chhhhhhhhhheeccccc-ccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 44555555555444433 333334444555555555 333 233333333444444445555555666667778889999
Q ss_pred ccccccccHHHHHHhhhCCCCccccCCC
Q 011708 451 TLESCKVTANDIKRLQSRDLPNLVSFRP 478 (479)
Q Consensus 451 ~l~~~~l~~~~~~~~~~~~~p~L~~l~~ 478 (479)
++.+|.+...... . +.|.+|+.|.+
T Consensus 511 DL~nNdlq~IPp~--L-gnmtnL~hLeL 535 (565)
T KOG0472|consen 511 DLQNNDLQQIPPI--L-GNMTNLRHLEL 535 (565)
T ss_pred ccCCCchhhCChh--h-ccccceeEEEe
Confidence 9988876543322 1 57777777765
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=4.7e-24 Score=201.57 Aligned_cols=415 Identities=21% Similarity=0.186 Sum_probs=269.7
Q ss_pred HHhhhcC-cceeeeccCCCCCChHHHHHHHhCCCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhh
Q 011708 25 LEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103 (479)
Q Consensus 25 ~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 103 (479)
....+.| .++.+.++.......... .....+|+.|+++.+.|... +....++.+|+.+.|.++ .....+..+.
T Consensus 38 l~~~~~~v~L~~l~lsnn~~~~fp~~---it~l~~L~~ln~s~n~i~~v-p~s~~~~~~l~~lnL~~n--~l~~lP~~~~ 111 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQISSFPIQ---ITLLSHLRQLNLSRNYIRSV-PSSCSNMRNLQYLNLKNN--RLQSLPASIS 111 (1081)
T ss_pred hHHhhheeeeEEeeccccccccCCch---hhhHHHHhhcccchhhHhhC-chhhhhhhcchhheeccc--hhhcCchhHH
Confidence 4444444 677777765543322211 11235788899998877643 356678888999998873 2344567778
Q ss_pred CCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccc-------------------cccccccccccCCcCccEEeccC
Q 011708 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC-------------------TRIHGGLVNLKGLMKLESLNIKW 164 (479)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-------------------~~~~~~~~~~~~l~~L~~L~l~~ 164 (479)
.+.+|++|+++++.... .|..+..+..+..+..+++ ......+..+..+.. .|++.+
T Consensus 112 ~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~ 187 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY 187 (1081)
T ss_pred hhhcccccccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence 88889999999885433 2433443333333333332 222222222222222 355555
Q ss_pred CCCCCccccccc-----------------cCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCC
Q 011708 165 CNCITDSDMKPL-----------------SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227 (479)
Q Consensus 165 ~~~~~~~~~~~~-----------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 227 (479)
+.-. ......+ -.-++|+.|...+|.+.... .-....+|+.++++.+.+.... .+++.+
T Consensus 188 N~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~~lp-~wi~~~ 263 (1081)
T KOG0618|consen 188 NEME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLSNLP-EWIGAC 263 (1081)
T ss_pred chhh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec--cccccccceeeecchhhhhcch-HHHHhc
Confidence 3221 1111100 01134444444444443211 1123458899999988877764 888899
Q ss_pred CCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHh-----------
Q 011708 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL----------- 296 (479)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----------- 296 (479)
.+|+.+...+|.+... +..+....+|+.|....|.+.. .+....+...|++|++..+.+.......+
T Consensus 264 ~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 264 ANLEALNANHNRLVAL-PLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred ccceEecccchhHHhh-HHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHh
Confidence 9999999999887443 3444455566666666655542 23334455666666666654432111111
Q ss_pred --------------hCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCch
Q 011708 297 --------------TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362 (479)
Q Consensus 297 --------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 362 (479)
...+.|+.|.+.+|.+++.....+.++++|+.|++++|.+...+...+.+++.|+.|++++|+++.
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~ 421 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT 421 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh
Confidence 114567788888999999888889999999999999999988888888999999999999999998
Q ss_pred hhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhc
Q 011708 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442 (479)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 442 (479)
.+ ..+..++.|++|...+|.+...+ .+.+++.|+.+|++.| +++......-..-++|++|+++||.......+.|.
T Consensus 422 Lp-~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~ 497 (1081)
T KOG0618|consen 422 LP-DTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLK 497 (1081)
T ss_pred hh-HHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcccccchhhhH
Confidence 65 67789999999999999888764 7888999999999999 67655443333338999999999986666667777
Q ss_pred cCccccccccccccccH
Q 011708 443 PLKNLRSLTLESCKVTA 459 (479)
Q Consensus 443 ~~~~L~~L~l~~~~l~~ 459 (479)
.+.++...++.-++..+
T Consensus 498 ~l~~l~~~~i~~~~~~d 514 (1081)
T KOG0618|consen 498 VLKSLSQMDITLNNTPD 514 (1081)
T ss_pred HhhhhhheecccCCCCc
Confidence 77778887777774444
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.5e-21 Score=204.41 Aligned_cols=340 Identities=21% Similarity=0.187 Sum_probs=166.6
Q ss_pred hhhccCCCCCeEeccCCC-----CCChhhhHhhhCC-CCCcEEEcCCCCCCChhHHHHHhCCCCCcEEeccccccccccc
Q 011708 75 IHLKDCSNLQSLDFNFCI-----QISDGGLEHLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148 (479)
Q Consensus 75 ~~~~~~~~L~~L~l~~~~-----~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 148 (479)
.+|.++++|+.|.+.... .+....+..+..+ ++|+.|++.++.. ...|..+ ...+|++|+++++ .+...+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f-~~~~L~~L~L~~s-~l~~L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF-RPENLVKLQMQGS-KLEKLW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC-CccCCcEEECcCc-cccccc
Confidence 345666666666664321 0111112223333 3466666665531 2223333 3456666666653 233344
Q ss_pred ccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCC
Q 011708 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228 (479)
Q Consensus 149 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 228 (479)
..+..+++|+.|+++++..+... ..+..+++|+.|++.+|......+..+.++++|+.|++++|......+..+ +++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 44555666666666655444321 234556666666666554333444455666666666666653322222222 455
Q ss_pred CCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCCh-------HHHHHhhCCCC
Q 011708 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-------EGLVNLTGLTN 301 (479)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~ 301 (479)
+|+.|++++|......+. ...+|+.|++.++.+.. .|..+ .+++|++|.+.++.... ..+.....+++
T Consensus 705 sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 666666666543222211 13456666666655432 12111 34555555555432110 00111122456
Q ss_pred CCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccC
Q 011708 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381 (479)
Q Consensus 302 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (479)
|+.|++++|......+..+.++++|+.|++++|......+... .+++|+.|++++|......+. ..++|+.|++++
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~ 855 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSR 855 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECCC
Confidence 6666666664433344455666666666666653211111111 456666666666643222111 224566666666
Q ss_pred CccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCc
Q 011708 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432 (479)
Q Consensus 382 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 432 (479)
|.+... +..+..+++|+.|++++|.++.. .+..+..+++|+.+++++|.
T Consensus 856 n~i~~i-P~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 856 TGIEEV-PWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCccC-hHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCc
Confidence 666544 44556666666666666655553 23334556666666666663
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=2e-20 Score=196.07 Aligned_cols=342 Identities=20% Similarity=0.171 Sum_probs=238.5
Q ss_pred hhHhhhCCCCCcEEEcCCCC-----CCChhHHHHHhCCC-CCcEEecccccccccccccccCCcCccEEeccCCCCCCcc
Q 011708 98 GLEHLRGLSNLTSLSFRRNN-----AITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171 (479)
Q Consensus 98 ~~~~l~~~~~L~~L~l~~~~-----~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (479)
...+|.++++|+.|.+..+. ......|..+..++ +|+.|.+.++ .....|..+ ...+|+.|++.++. +. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~-l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSK-LE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcc-cc-c
Confidence 34567889999999986542 11223455566654 6999999874 344445444 56899999999854 33 2
Q ss_pred ccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcC
Q 011708 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251 (479)
Q Consensus 172 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 251 (479)
....+..+++|+.|+++++......+ .+..+++|+.|++++|......+..+..+++|+.|++++|......+..+ .+
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 44556788999999998764322222 47788999999999987666667788899999999999875433333322 67
Q ss_pred CCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCH-------HHHHHhhCCC
Q 011708 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD-------GSLRKLAGLS 324 (479)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~l~~~~ 324 (479)
++|+.|++++|......+. ...+|+.|+++++.+... +.. ..+++|+.|.+..+.... ........++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l-P~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF-PSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc-ccc-ccccccccccccccchhhccccccccchhhhhccc
Confidence 8999999998864433332 246899999999876532 222 246788888886542211 1111123457
Q ss_pred CCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceecc
Q 011708 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404 (479)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (479)
+|+.|++++|......+..++++++|+.|++++|......+..+ .+++|+.|++++|......+. ..++|+.|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECC
Confidence 89999999986555556668899999999999985433333333 688999999999854332221 23689999999
Q ss_pred CCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCcccccccccccc
Q 011708 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456 (479)
Q Consensus 405 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 456 (479)
+| .++ ..|..+..+++|+.|++++|+-....+..+..+++|+.+++++|.
T Consensus 855 ~n-~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RT-GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CC-CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 98 666 457788999999999999986444455566778899999999994
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.83 E-value=1.4e-18 Score=158.96 Aligned_cols=254 Identities=30% Similarity=0.367 Sum_probs=127.5
Q ss_pred cCCCCCEEEecCCCCCHH----HHHHHhCCCCCCEEEccCCCCCh------hhHHHHhcCCCCcEEecccccCChHHHHH
Q 011708 202 GLQKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNRCQLSD------DGCEKFSKIGSLKVLNLGFNEITDECLVH 271 (479)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (479)
.+..|+.++++++.+... .+..+...+++++++++++.+.. ..+..+..+++|+.|+++++.+....+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 333455555554444222 12223334445555555544331 11233444555556665555554333332
Q ss_pred hcCC---CCccEEeccCCCCChHHH----HHhhCC-CCCCeeeccCCCCCHH----HHHHhhCCCCCceeecCCCCCCHH
Q 011708 272 LKGL---TNLESLNLDSCGIGDEGL----VNLTGL-TNLESINLSFTGISDG----SLRKLAGLSSLKSLNLDARQITDT 339 (479)
Q Consensus 272 l~~~---~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~ 339 (479)
+..+ ++|++|++++|.+.+... ..+..+ ++|+.|++++|.++.. ....+..+++|++|++++|.+.+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 2222 336666666665553222 223334 5666666666655522 222334556666666666666643
Q ss_pred HHHH----HhcCCCCCEEEccCCCCchhhHH----HHhcCCCCceeeccCCccChHHHHHHHc-----cCCCCceeccCC
Q 011708 340 GLAA----LTSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKHIKD-----LSSLTLLNLSQN 406 (479)
Q Consensus 340 ~~~~----l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~ 406 (479)
.... +..+++|+.|++++|.+.+.... .+..+++|++|++++|.+.+.....+.. .+.|+.|++++|
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 3222 23445677777776666543322 2345566777777766666544433322 256777777776
Q ss_pred CCCCHH----HHHHHHcCCCCceeecCCCccchhhhhh----hccC-cccccccccccc
Q 011708 407 CNLTDK----TLELISGLTGLVSLNVSNSRITSAGLRH----LKPL-KNLRSLTLESCK 456 (479)
Q Consensus 407 ~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~ 456 (479)
.+++. ....+..+++|+.+++++|.+.+.+... +... +.|+.+++.+++
T Consensus 261 -~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 261 -DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred -CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 55422 2233445566777777777666554322 2333 566777766665
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=5.2e-18 Score=155.21 Aligned_cols=256 Identities=28% Similarity=0.346 Sum_probs=150.2
Q ss_pred cCCCCCcEEEccCCccchHhH----HHhhcCCCCCEEEecCCCCC------HHHHHHHhCCCCCCEEEccCCCCChhhHH
Q 011708 177 SGLTNLKSLQISCSKVTDSGI----AYLKGLQKLTLLNLEGCPVT------AACLDSLSALGSLFYLNLNRCQLSDDGCE 246 (479)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 246 (479)
..++.|+.++++++.++.... ..+...+.+++++++++.+. ...+..+..+++|++|++++|.+....+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 344445555555555543221 22334455666666555443 12233455566777777776666544444
Q ss_pred HHhcCCC---CcEEecccccCChHHH----HHhcCC-CCccEEeccCCCCChHH----HHHhhCCCCCCeeeccCCCCCH
Q 011708 247 KFSKIGS---LKVLNLGFNEITDECL----VHLKGL-TNLESLNLDSCGIGDEG----LVNLTGLTNLESINLSFTGISD 314 (479)
Q Consensus 247 ~~~~~~~---L~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~ 314 (479)
.+..+.. |+.|++++|.+..... ..+..+ ++|+.|++++|.++... ...+..++.|+.|++++|.+.+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 4443333 7777777766653222 223444 67777777777666322 2334556677777777777664
Q ss_pred HHHH----HhhCCCCCceeecCCCCCCHHHHHH----HhcCCCCCEEEccCCCCchhhHHHH-hc----CCCCceeeccC
Q 011708 315 GSLR----KLAGLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSGAAYL-RN----FKNLRSLEICG 381 (479)
Q Consensus 315 ~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~-~~----~~~L~~L~l~~ 381 (479)
.... .+..+++|++|++++|.+.+.+... +..+++|+.|++++|.+++.....+ .. .+.|++|++++
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 3322 2345567888888877776554432 3456778888888887776443333 12 36888888888
Q ss_pred CccChHHH----HHHHccCCCCceeccCCCCCCHHHH----HHHHcC-CCCceeecCCCcc
Q 011708 382 GGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDKTL----ELISGL-TGLVSLNVSNSRI 433 (479)
Q Consensus 382 ~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~l-~~L~~L~l~~~~~ 433 (479)
|.+++... ..+..+++|+++++++| .+..... ..+... +.|+++++.++++
T Consensus 260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 260 NDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 88764322 34455678888888888 6765533 333344 6788888887753
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=1.7e-21 Score=167.24 Aligned_cols=278 Identities=22% Similarity=0.152 Sum_probs=172.6
Q ss_pred CCCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCc
Q 011708 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (479)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (479)
-.+....+.|..|+|+.....+|+.+++||+|+|++ +.+..+.+++|..+++|..|.+.+++.+++.....|+++..|+
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 346788999999999999999999999999999999 5799999999999999999988886678888888899999999
Q ss_pred EEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccch------------HhHHHhhc
Q 011708 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------SGIAYLKG 202 (479)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~~l~~ 202 (479)
.|.+..+.....-...+..+++|..|.+..+ .+.......+..+..++.+.+..+.+.. ..+..++.
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 9998876555455556888899998888863 2332333466677777777766543111 00111111
Q ss_pred CCCCCEEEecCCCCCHHHHHHHhC-CCCCCEEEccCCCCC-hhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccE
Q 011708 203 LQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQLS-DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280 (479)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (479)
+.-..-..+...++....+..+.. ..++..--.+.+... .-+...|..+++|++|++++|.++.....+|.+...+++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 111111111111111111111111 011111111112111 122344566666666666666666666666666666666
Q ss_pred EeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCC
Q 011708 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334 (479)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 334 (479)
|.+..|++.......|.++..|+.|++.+|+++...+.+|.....|.+|.+-.|
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 666666665555555666666666666666666655555655666666666443
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=2.7e-19 Score=153.80 Aligned_cols=276 Identities=21% Similarity=0.221 Sum_probs=171.5
Q ss_pred CccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecC-CCCCHHHHHHHhCCCCCCEEE
Q 011708 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLN 234 (479)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~ 234 (479)
.-..+.+.. +.+.......|..+++|+.|++++|.|+...+..|.+++.+..|-+.+ |++.......|+++.+++.|.
T Consensus 68 ~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 344555655 456666677777888888888888888877777888887777777666 677777777777788888888
Q ss_pred ccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChH------------HHHHhhCCCCC
Q 011708 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE------------GLVNLTGLTNL 302 (479)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------------~~~~~~~~~~L 302 (479)
+.-+.+.-...++|..++++..|.+..|.+....-..+..+..++.+.+..+.+... .+..++...-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 877777777777777888888887777655433333455666677776665532110 00011111111
Q ss_pred CeeeccCCCCCHHHHHHhhCC-CCCceeecCCCCC-CHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeecc
Q 011708 303 ESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQI-TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380 (479)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 380 (479)
....+...++.......+... ..+.+--.+.+.. ..-+...|..+++|++|++++|+++.+-..+|.....+++|.+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 111111111111111111110 1111111111211 11233456777888888888888877777777777888888888
Q ss_pred CCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCcc
Q 011708 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433 (479)
Q Consensus 381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 433 (479)
+|++.......|..+..|+.|++.+| .++...+..|..+.+|.+|++-.|++
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCcc
Confidence 88877777777777888888888888 67777777777777888888766653
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=8.8e-15 Score=143.10 Aligned_cols=264 Identities=19% Similarity=0.112 Sum_probs=159.3
Q ss_pred CCcEEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEe
Q 011708 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (479)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 211 (479)
.-..|+++.+ .+...|..+. ++|+.|++.++. ++. .+. ..++|++|++++|.++..+ . ..++|+.|++
T Consensus 202 ~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~-Lt~-LP~---lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNN-LTS-LPA---LPPELRTLEVSGNQLTSLP-V---LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCC-CCCcCCcchh--cCCCEEEccCCc-CCC-CCC---CCCCCcEEEecCCccCccc-C---cccccceeec
Confidence 4556677664 3334444443 367777777632 332 111 2467777777777766432 1 2357777777
Q ss_pred cCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChH
Q 011708 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291 (479)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 291 (479)
++|.+... +. ...+|+.|++++|.+..... ..++|+.|++++|.+... +. ...+|+.|.+++|.++..
T Consensus 270 s~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 270 FSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL 337 (788)
T ss_pred cCCchhhh-hh---chhhcCEEECcCCccccccc----cccccceeECCCCccccC-CC---CcccccccccccCccccc
Confidence 77765542 21 12467777777777664321 245678888877776542 11 134577777777766532
Q ss_pred HHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcC
Q 011708 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371 (479)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 371 (479)
. . ...+|+.|++++|.++.... ..++|+.|++++|.+...+. ..++|+.|++++|.++..+. ..
T Consensus 338 P-~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~LP~----l~ 401 (788)
T PRK15387 338 P-T---LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLPV----LP 401 (788)
T ss_pred c-c---cccccceEecCCCccCCCCC----CCcccceehhhccccccCcc----cccccceEEecCCcccCCCC----cc
Confidence 1 1 12467788888777664221 23567777777777664221 12467888888887775332 23
Q ss_pred CCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhh
Q 011708 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441 (479)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 441 (479)
++|+.|++++|.++..+ .. ..+|+.|++++| .++ .+|..+.++++|+.|++++|++....+..+
T Consensus 402 s~L~~LdLS~N~LssIP-~l---~~~L~~L~Ls~N-qLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 402 SELKELMVSGNRLTSLP-ML---PSGLLSLSVYRN-QLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCEEEccCCcCCCCC-cc---hhhhhhhhhccC-ccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 57888888888777642 21 246777888887 566 346667778888888888888777655544
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=8.5e-15 Score=143.19 Aligned_cols=265 Identities=21% Similarity=0.139 Sum_probs=193.6
Q ss_pred cCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEE
Q 011708 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234 (479)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 234 (479)
.+-..|+++++ .++. .+..+. ++|+.|.+.+|+++... ...++|++|++++|.++.. +. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~-~Lts-LP~~l~--~~L~~L~L~~N~Lt~LP----~lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGES-GLTT-LPDCLP--AHITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLTSL-PV---LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCC-CCCc-CCcchh--cCCCEEEccCCcCCCCC----CCCCCCcEEEecCCccCcc-cC---cccccceee
Confidence 45677888875 3442 344443 57999999999888532 2357999999999987754 21 246899999
Q ss_pred ccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCH
Q 011708 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314 (479)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 314 (479)
+++|.+.... . ...+|+.|++++|.+... +. .+++|+.|++++|.+..... ....|+.|.+++|.++.
T Consensus 269 Ls~N~L~~Lp-~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLTHLP-A---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchhhhh-h---chhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC----CcccccccccccCcccc
Confidence 9999876433 2 235789999999988743 22 35789999999998775321 23568889999888764
Q ss_pred HHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHc
Q 011708 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394 (479)
Q Consensus 315 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 394 (479)
.. . ..++|+.|++++|.+...+. ..++|+.|++++|.+...+. ..++|+.|++++|.++..+. .
T Consensus 337 LP-~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~LP~----l 400 (788)
T PRK15387 337 LP-T---LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLPV----L 400 (788)
T ss_pred cc-c---cccccceEecCCCccCCCCC----CCcccceehhhccccccCcc----cccccceEEecCCcccCCCC----c
Confidence 22 1 12589999999998876332 23578999999998886432 23589999999999886432 2
Q ss_pred cCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccHHHHHHh
Q 011708 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465 (479)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 465 (479)
.++|+.|++++| .++.. +.. ..+|+.|++++|.+... |..+..+++|+.|++++|+++......+
T Consensus 401 ~s~L~~LdLS~N-~LssI-P~l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 PSELKELMVSGN-RLTSL-PML---PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCCEEEccCC-cCCCC-Ccc---hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 368999999999 66643 322 35788999999999864 5678889999999999999998766655
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.57 E-value=5.3e-15 Score=128.74 Aligned_cols=297 Identities=31% Similarity=0.454 Sum_probs=169.3
Q ss_pred CccEEeccCCCCCCcccccccc-CCCCCcEEEccCC-ccchHhHHHh-hcCCCCCEEEecCC-CCCHHHHHHHhCCCCCC
Q 011708 156 KLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCS-KVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLF 231 (479)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~ 231 (479)
.|+.|.+++|..........+. ++++++.|.+.++ .+++.....+ ..+++|+++++..| .++......+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l------- 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL------- 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH-------
Confidence 4566666666555444443332 4566666555544 3333333333 34455555555553 2333222211
Q ss_pred EEEccCCCCChhhHHHHhcCCCCcEEeccccc-CChHHH-HHhcCCCCccEEeccCCC-CChHHHHHh-hCCCCCCeeec
Q 011708 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECL-VHLKGLTNLESLNLDSCG-IGDEGLVNL-TGLTNLESINL 307 (479)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l 307 (479)
...+++|++++++++. +..... ....++..++.+...+|. ......... +.++.+..+++
T Consensus 212 ----------------a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 212 ----------------AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL 275 (483)
T ss_pred ----------------HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence 1234444444444442 111111 122345555555555552 222222111 23455555665
Q ss_pred cCC-CCCHHHHHHhh-CCCCCceeecCCC-CCCHHHHHHH-hcCCCCCEEEccCCC-CchhhHHHH-hcCCCCceeeccC
Q 011708 308 SFT-GISDGSLRKLA-GLSSLKSLNLDAR-QITDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEICG 381 (479)
Q Consensus 308 ~~~-~~~~~~~~~l~-~~~~L~~L~l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~ 381 (479)
..| .+++.....+. .+..|+.++.+++ .+++.....+ .++++|+.+.+..|+ +++.....+ .+++.|+.+++.+
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 555 34444433333 5677788887774 3444444554 367888888888874 555555555 5678888888877
Q ss_pred CccChHH--HHHHHccCCCCceeccCCCCCCHHHHHHHH----cCCCCceeecCCCcc-chhhhhhhccCcccccccccc
Q 011708 382 GGLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKTLELIS----GLTGLVSLNVSNSRI-TSAGLRHLKPLKNLRSLTLES 454 (479)
Q Consensus 382 ~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~----~l~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~ 454 (479)
+...... ...-.+++.|+.+.+++|..+++.....+. ....|..+.+++|+. .+...+.+..|++|+.+++.+
T Consensus 356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 6543322 223345788888888888777776544443 456788888888864 555567788888999999999
Q ss_pred c-cccHHHHHHhhhCCCCccccC
Q 011708 455 C-KVTANDIKRLQSRDLPNLVSF 476 (479)
Q Consensus 455 ~-~l~~~~~~~~~~~~~p~L~~l 476 (479)
| .++..++..+. ..+|+++..
T Consensus 436 ~q~vtk~~i~~~~-~~lp~i~v~ 457 (483)
T KOG4341|consen 436 CQDVTKEAISRFA-THLPNIKVH 457 (483)
T ss_pred hhhhhhhhhHHHH-hhCccceeh
Confidence 8 66777888887 888888764
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.56 E-value=5.5e-15 Score=128.62 Aligned_cols=357 Identities=25% Similarity=0.363 Sum_probs=242.3
Q ss_pred CCcHHHHHHHHHHHhhccCCcHHHH-HhhhcC-----cceeeeccCCC-CCChHHHHHHHhCC-CCccEEEecCCC-CCh
Q 011708 1 MLPRDISQQIFNELVYSRCLTEVSL-EAFRDC-----ALQDLCLGQYP-GVNDKWMDVIASQG-SSLLSVDLSGSD-VTD 71 (479)
Q Consensus 1 ~~~~e~~~~~~~~l~~~~~~~~~~~-~~~~~~-----~l~~l~l~~~~-~~~~~~~~~~~~~~-~~l~~L~l~~~~-~~~ 71 (479)
.+|+|+.-.+|..|-.+...+.... ..+..| ..+.+.+...+ ++....+..+..++ ..++.|++.++. +.+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~ 153 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGD 153 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCc
Confidence 3688888888866654443332111 111122 22333333222 23334444444443 579999999954 344
Q ss_pred hhhhhh-ccCCCCCeEeccCCCCCChhhhHhhh-CCCCCcEEEcCCCCCCChhHHHHH-hCCCCCcEEeccccccccc-c
Q 011708 72 SGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRIHG-G 147 (479)
Q Consensus 72 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~-~ 147 (479)
.....+ ..||++++|.+.+|.++++....++. .|++|++|++..|..+++.....+ ..|++|++++++.|..+.+ .
T Consensus 154 sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 154 SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 444444 68999999999999999998887776 799999999999988888777744 4799999999999987665 2
Q ss_pred cc-cccCCcCccEEeccCCCCCCcccccccc-CCCCCcEEEccCC-ccchHhHHHh-hcCCCCCEEEecCC-CCCHHHHH
Q 011708 148 LV-NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCS-KVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLD 222 (479)
Q Consensus 148 ~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~-~~~~~~~~ 222 (479)
+. ...++.+++.+...+|..........+. .+..+..+++..+ .+++.....+ ..+..|+.+..+++ .+......
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~ 313 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW 313 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH
Confidence 33 2466788888888888766644443333 4566777776555 5666555444 45778999999988 44444444
Q ss_pred HHh-CCCCCCEEEccCCC-CChhhHHHHh-cCCCCcEEecccccCChHH-HHH-hcCCCCccEEeccCC-CCChHHHHHh
Q 011708 223 SLS-ALGSLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNEITDEC-LVH-LKGLTNLESLNLDSC-GIGDEGLVNL 296 (479)
Q Consensus 223 ~l~-~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~-~~~-l~~~~~L~~L~l~~~-~~~~~~~~~~ 296 (479)
.++ ++++|+.+.+..|. ++......++ +++.|+.+++..+...... ... -.+++.|+.+.+++| .+++.+...+
T Consensus 314 aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 314 ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 444 68999999999985 5555545555 6789999999887654332 222 257899999999988 4455544444
Q ss_pred h----CCCCCCeeeccCC-CCCHHHHHHhhCCCCCceeecCCCC-CCHHHHHHH-hcCCCCCEEEccC
Q 011708 297 T----GLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAAL-TSLTGLTHLDLFG 357 (479)
Q Consensus 297 ~----~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~ 357 (479)
. ....|..+.+.++ .+++...+.+..+++|+.+.+.+++ ++..+...+ ..+|+++...+..
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 3 3567889999988 5667778888899999999998864 455555544 3678877665543
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.53 E-value=9.7e-14 Score=118.28 Aligned_cols=134 Identities=22% Similarity=0.303 Sum_probs=59.5
Q ss_pred CCCCCeeeccCCCCCHHHHH----HhhCCCCCceeecCCCCCCHHHH----HHHhcCCCCCEEEccCCCCchhhHH----
Q 011708 299 LTNLESINLSFTGISDGSLR----KLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAA---- 366 (479)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~---- 366 (479)
-+.|+.+...+|++.+.+.. .+...+.|+.+++..|.+...+. ..+..|+.|+.|++.+|-++..+..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 34455555555544332222 22234555555555554443333 2233455555555555544433222
Q ss_pred HHhcCCCCceeeccCCccChHHHHHHH-----ccCCCCceeccCCCCCCHHHHHH----HHcCCCCceeecCCCcc
Q 011708 367 YLRNFKNLRSLEICGGGLTDAGVKHIK-----DLSSLTLLNLSQNCNLTDKTLEL----ISGLTGLVSLNVSNSRI 433 (479)
Q Consensus 367 ~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~ 433 (479)
.+...++|+.+++++|.+...+...+. ..|+|+++.+.+| .++...... +..-+.|.+|++++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 223344555555555555443333222 1355555555555 344332222 22344555555555554
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.49 E-value=6.6e-13 Score=113.28 Aligned_cols=250 Identities=21% Similarity=0.265 Sum_probs=160.6
Q ss_pred HhhcCCCCCEEEecCCCCCHHHHHH----HhCCCCCCEEEccCCCCC---hhhHHHHhcCCCCcEEecccccCChHHHHH
Q 011708 199 YLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDGCEKFSKIGSLKVLNLGFNEITDECLVH 271 (479)
Q Consensus 199 ~l~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (479)
.+.....++.++++||.+....... +.+.+.|+..++++-... ...+.++. .....
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~-----------------~l~~a 87 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK-----------------MLSKA 87 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH-----------------HHHHH
Confidence 3455566777777777665443332 334455555555542111 11111110 01122
Q ss_pred hcCCCCccEEeccCCCCChHHHHH----hhCCCCCCeeeccCCCCCHHHHHH-------------hhCCCCCceeecCCC
Q 011708 272 LKGLTNLESLNLDSCGIGDEGLVN----LTGLTNLESINLSFTGISDGSLRK-------------LAGLSSLKSLNLDAR 334 (479)
Q Consensus 272 l~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~ 334 (479)
+..+|+|++++|++|.++...+.. ++++..|++|.+.+|++....-.. .+.-+.|+.+....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 344556666666666555433332 345666666666666554332222 335689999999999
Q ss_pred CCCHHHHH----HHhcCCCCCEEEccCCCCchhhH----HHHhcCCCCceeeccCCccChHHHHH----HHccCCCCcee
Q 011708 335 QITDTGLA----ALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKH----IKDLSSLTLLN 402 (479)
Q Consensus 335 ~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~ 402 (479)
.+.+.+.. .+...+.|+.+.+.+|.+...+. ..+..+|+|+.|++.+|.++...... +...+.|++|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 88776654 34577899999999998775443 45689999999999999888765443 44468899999
Q ss_pred ccCCCCCCHHHHHHH-----HcCCCCceeecCCCccchhhhhh----hccCccccccccccccc--cHHHHHHhh
Q 011708 403 LSQNCNLTDKTLELI-----SGLTGLVSLNVSNSRITSAGLRH----LKPLKNLRSLTLESCKV--TANDIKRLQ 466 (479)
Q Consensus 403 l~~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l--~~~~~~~~~ 466 (479)
+++| .+.......+ ...++|+.|.+.+|.++..+... +...|.|+.|++++|.+ ...++..+.
T Consensus 248 l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~ 321 (382)
T KOG1909|consen 248 LGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIA 321 (382)
T ss_pred cccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHH
Confidence 9999 7766655443 35799999999999887755433 34579999999999999 444454443
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=9.9e-14 Score=136.64 Aligned_cols=248 Identities=17% Similarity=0.173 Sum_probs=148.3
Q ss_pred CccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEc
Q 011708 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (479)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 235 (479)
+...|++++. .++. .+..+. ++|+.|++++|.++.... .+ .++|+.|++++|.+... +..+. .+|+.|++
T Consensus 179 ~~~~L~L~~~-~Lts-LP~~Ip--~~L~~L~Ls~N~LtsLP~-~l--~~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKIL-GLTT-IPACIP--EQITTLILDNNELKSLPE-NL--QGNIKTLYANSNQLTSI-PATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCC-CcCc-CCcccc--cCCcEEEecCCCCCcCCh-hh--ccCCCEEECCCCccccC-Chhhh--ccccEEEC
Confidence 4667777763 2332 222232 578888888888775433 22 24788888888876643 32232 36888888
Q ss_pred cCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHH
Q 011708 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG 315 (479)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 315 (479)
++|.+.... ..+. .+|+.|++++|.+.. .+..+ .++|+.|++++|.+.... ..+ .++|+.|++++|.++..
T Consensus 249 s~N~L~~LP-~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 249 SINRITELP-ERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred cCCccCcCC-hhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccccC
Confidence 888776443 2232 468888888887763 33322 247888888888665422 111 23577777777766542
Q ss_pred HHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHcc
Q 011708 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395 (479)
Q Consensus 316 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 395 (479)
. .. ..++|+.|++++|.++..+. .+ .++|+.|++++|++...+ ..+ .++|+.|++++|.++..+.. +.
T Consensus 320 P-~~--l~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~~LP-~~l--p~~L~~LdLs~N~Lt~LP~~-l~-- 387 (754)
T PRK15370 320 P-ET--LPPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKNQITVLP-ETL--PPTITTLDVSRNALTNLPEN-LP-- 387 (754)
T ss_pred C-cc--ccccceeccccCCccccCCh-hh--cCcccEEECCCCCCCcCC-hhh--cCCcCEEECCCCcCCCCCHh-HH--
Confidence 1 11 12577777777777665332 22 257777888777776432 222 25777777777777755332 22
Q ss_pred CCCCceeccCCCCCCHH---HHHHHHcCCCCceeecCCCccch
Q 011708 396 SSLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 396 ~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 435 (479)
+.|+.|++++| .+... .+.....++++..|++.+|++..
T Consensus 388 ~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 388 AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 35777777777 45422 22333445677777777777664
No 24
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.3e-13 Score=114.95 Aligned_cols=264 Identities=22% Similarity=0.219 Sum_probs=158.8
Q ss_pred CCcHHHHHHHHHHHhhccCCcHHHHHhhhcCcceeeeccCCCCCChHHHHHHHhCCCCccEEEecCCCCChhhhhhhccC
Q 011708 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80 (479)
Q Consensus 1 ~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~ 80 (479)
.+|+|+..+||.-|.....+...+ +...| ..++.+-...+.+++.+..+.......+..
T Consensus 100 slpDEill~IFs~L~kk~LL~~~~-------------------VC~Rf-yr~~~de~lW~~lDl~~r~i~p~~l~~l~~- 158 (419)
T KOG2120|consen 100 SLPDEILLGIFSCLCKKELLKVSG-------------------VCKRF-YRLASDESLWQTLDLTGRNIHPDVLGRLLS- 158 (419)
T ss_pred cCCHHHHHHHHHhccHHHHHHHHH-------------------HHHHH-hhccccccceeeeccCCCccChhHHHHHHh-
Confidence 378899999987665544332211 11112 223344456778888876665443333321
Q ss_pred CCCCeEeccCCCCCChh-hhHhhh-CCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcCcc
Q 011708 81 SNLQSLDFNFCIQISDG-GLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (479)
Q Consensus 81 ~~L~~L~l~~~~~~~~~-~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (479)
.....+.+-. ..+.+- ..+.+. .-.+|+++|+++...........+++|.+|+.|.+.+....+.....+++-.+|+
T Consensus 159 rgV~v~Rlar-~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~ 237 (419)
T KOG2120|consen 159 RGVIVFRLAR-SFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLV 237 (419)
T ss_pred CCeEEEEcch-hhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccce
Confidence 2333333322 111111 111121 2246999999988655555566678899999999998655555555678888999
Q ss_pred EEeccCCCCCCccccc-cccCCCCCcEEEccCCccchHhHHHh-hc-CCCCCEEEecCCCC---CHHHHHHHhCCCCCCE
Q 011708 159 SLNIKWCNCITDSDMK-PLSGLTNLKSLQISCSKVTDSGIAYL-KG-LQKLTLLNLEGCPV---TAACLDSLSALGSLFY 232 (479)
Q Consensus 159 ~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l-~~-~~~L~~L~l~~~~~---~~~~~~~l~~~~~L~~ 232 (479)
.|+++.|+.++..... .+.+|+.|.+|++++|.........+ .. -++|..|+++|+.- ......-...++++.+
T Consensus 238 ~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 238 RLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH 317 (419)
T ss_pred eeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence 9999998888765554 44688999999999886654443322 22 35788888888721 1122223346788888
Q ss_pred EEccCC-CCChhhHHHHhcCCCCcEEecccccCC-hHHHHHhcCCCCccEEeccCC
Q 011708 233 LNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLDSC 286 (479)
Q Consensus 233 L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~ 286 (479)
|+++++ .++......|.+++.|++|.++.|... ....-.+...|.|.+|++.+|
T Consensus 318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 888876 344444556667777777777766422 112222455677777777766
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=6.3e-13 Score=131.06 Aligned_cols=203 Identities=20% Similarity=0.174 Sum_probs=90.7
Q ss_pred CCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEec
Q 011708 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (479)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 259 (479)
++|+.|++++|.++.. +..+ .++|+.|++++|.+... +..+. .+|+.|++++|.+... +..+ .++|+.|++
T Consensus 220 ~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLTSI-PATL--PDTIQEMELSINRITEL-PERLP--SALQSLDLFHNKISCL-PENL--PEELRYLSV 290 (754)
T ss_pred cCCCEEECCCCccccC-Chhh--hccccEEECcCCccCcC-ChhHh--CCCCEEECcCCccCcc-cccc--CCCCcEEEC
Confidence 3556666655555432 1112 12455566665554432 22222 2556666665555432 1211 135566666
Q ss_pred ccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHH
Q 011708 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339 (479)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 339 (479)
++|.++.. +..+ .++|+.|++++|.+.... ..+ .++|+.|++++|.++.. +..+ +++|+.|++++|.+...
T Consensus 291 s~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~L 361 (754)
T PRK15370 291 YDNSIRTL-PAHL--PSGITHLNVQSNSLTALP-ETL--PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITVL 361 (754)
T ss_pred CCCccccC-cccc--hhhHHHHHhcCCccccCC-ccc--cccceeccccCCccccC-Chhh--cCcccEEECCCCCCCcC
Confidence 65555421 1111 124555555555444211 111 24555555555554432 1112 24566666665555432
Q ss_pred HHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHH---HHHHHccCCCCceeccCC
Q 011708 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 340 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~ 406 (479)
+. .+ .++|+.|++++|.++..+.. +. +.|+.|++++|++...+ +.....++.+..+++.+|
T Consensus 362 P~-~l--p~~L~~LdLs~N~Lt~LP~~-l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 362 PE-TL--PPTITTLDVSRNALTNLPEN-LP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred Ch-hh--cCCcCEEECCCCcCCCCCHh-HH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence 21 11 14556666666655543222 21 24555555555554321 112222355555666555
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.5e-12 Score=108.62 Aligned_cols=197 Identities=21% Similarity=0.214 Sum_probs=121.8
Q ss_pred CccEEeccCCCCChHHH-HHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCC-CCCHHHHHH-HhcCCCCCEE
Q 011708 277 NLESLNLDSCGIGDEGL-VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAA-LTSLTGLTHL 353 (479)
Q Consensus 277 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~-l~~~~~L~~L 353 (479)
.|++++++...++.... ..++.|.+|+.|.+.+..+.+.....++.-.+|+.++++.+ +++..+... +.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46666666665554332 33456667777777777776666666666677777777664 344444332 3567777777
Q ss_pred EccCCCCchhhHHHH--hcCCCCceeeccCCc--c-ChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeec
Q 011708 354 DLFGARITDSGAAYL--RNFKNLRSLEICGGG--L-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428 (479)
Q Consensus 354 ~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~--~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 428 (479)
+++.|.+.......+ .--++|+.|+++|+. + ..........+|+|..||+++|..++......+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777776554322222 223577777777641 1 12223345668888888888887777777777888888888888
Q ss_pred CCCcc-chhhhhhhccCccccccccccccccHHHHHHhhhCCCCcccc
Q 011708 429 SNSRI-TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475 (479)
Q Consensus 429 ~~~~~-~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~p~L~~ 475 (479)
+.|.. .....-.+.+.|+|.+|++.+|-- ...++-+. +.+|||+.
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~vs-dt~mel~~-e~~~~lki 391 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGCVS-DTTMELLK-EMLSHLKI 391 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccccC-chHHHHHH-HhCccccc
Confidence 88852 222234456778888888888732 22344443 66777653
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.35 E-value=1.9e-13 Score=136.86 Aligned_cols=206 Identities=19% Similarity=0.161 Sum_probs=130.6
Q ss_pred CcHHHHHHHHHHHhhccCCcHHHH-HhhhcCcceeeeccCCCCCCh--------HHHH--------HHHhCCCCccEEEe
Q 011708 2 LPRDISQQIFNELVYSRCLTEVSL-EAFRDCALQDLCLGQYPGVND--------KWMD--------VIASQGSSLLSVDL 64 (479)
Q Consensus 2 ~~~e~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~--------~~~~--------~~~~~~~~l~~L~l 64 (479)
..++.+++|+.+|++++.+..... ..+..|.|||++...+-.+.. ..+. .-.......|+..+
T Consensus 451 ~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~ 530 (889)
T KOG4658|consen 451 TAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSL 530 (889)
T ss_pred chhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEE
Confidence 457899999999999999876554 344578999996643211111 0000 00011234566666
Q ss_pred cCCCCChhhhhhhccCCCCCeEeccCCCC-CChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccc
Q 011708 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143 (479)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 143 (479)
.++.+... ..-..++.|++|-+.++.. +.....+.|..++.|+.||+++|.. ...+|..++.+-+||+|++++ +.
T Consensus 531 ~~~~~~~~--~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~-t~ 606 (889)
T KOG4658|consen 531 MNNKIEHI--AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSD-TG 606 (889)
T ss_pred eccchhhc--cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccC-CC
Confidence 66554322 2234567888888887532 4555555677888899999988743 456788888888889888888 46
Q ss_pred cccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCc--cchHhHHHhhcCCCCCEEEec
Q 011708 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLE 212 (479)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~ 212 (479)
+...|..+.++.+|.+|++......... +.....+++|++|.+.... ........+.++.+|+.+.+.
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 6677778888888888888875544322 4444457888888876543 222233344455555555443
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.9e-13 Score=117.96 Aligned_cols=209 Identities=24% Similarity=0.243 Sum_probs=135.1
Q ss_pred cCCCCcEEecccccCChHHH-HHhcCCCCccEEeccCCCCCh--HHHHHhhCCCCCCeeeccCCCCCHHHHHHh-hCCCC
Q 011708 250 KIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGD--EGLVNLTGLTNLESINLSFTGISDGSLRKL-AGLSS 325 (479)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~ 325 (479)
++.+|+.+.+.++....... .....+++++.|+++.|-+.. ........+|+|+.|+++.|.+........ ..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 56778888888776543322 235678888889988885543 223344678888888888875542211111 15678
Q ss_pred CceeecCCCCCCHHHHHH-HhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHH-HHHHHccCCCCceec
Q 011708 326 LKSLNLDARQITDTGLAA-LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNL 403 (479)
Q Consensus 326 L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 403 (479)
|+.|.+++|+++...... +..+|+|+.|++.+|............+..|++|++++|.+.+.. ......+|.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 888888888887655443 357888888888887421111112244567888888887766543 334556788888888
Q ss_pred cCCCCCCHHHHHH------HHcCCCCceeecCCCccchhh-hhhhccCccccccccccccccH
Q 011708 404 SQNCNLTDKTLEL------ISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 404 ~~~~~~~~~~~~~------l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~ 459 (479)
+.| ++.++.... ...+++|+.|++..|++.+.. ...+..+++|+.|.+..++++.
T Consensus 279 s~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 279 SST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 887 565543222 245778888888888775432 3455667788888877777655
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.7e-11 Score=107.92 Aligned_cols=208 Identities=21% Similarity=0.198 Sum_probs=93.3
Q ss_pred CCCccEEEecCCCCChhhh-hhhccCCCCCeEeccCCCCCChh--hhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCC
Q 011708 56 GSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLDFNFCIQISDG--GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (479)
..+|+.+.+.++.+..... .....|+++|.|+++++ -++.. .......+|+|+.|+++.|..........-..+++
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3445555555554443322 22345555555555552 22211 11122345555555555543222111111223455
Q ss_pred CcEEeccccccccccccc-ccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHh-HHHhhcCCCCCEEE
Q 011708 133 LVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IAYLKGLQKLTLLN 210 (479)
Q Consensus 133 L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~ 210 (479)
|+.|.++.|...-..+.. +..+++|+.|.+..+..+. ........+..|++|++++|.+-+.. ....+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 555555555433222221 2345555555555533211 11112223445555555555443221 12334555555555
Q ss_pred ecCCCCCHHHHH------HHhCCCCCCEEEccCCCCChh-hHHHHhcCCCCcEEecccccCC
Q 011708 211 LEGCPVTAACLD------SLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEIT 265 (479)
Q Consensus 211 l~~~~~~~~~~~------~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 265 (479)
++.+.+...... .....++|++|++..|.+.+. ....+..+++|+.+.+..+.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 555544332111 123456777777777766432 2234445566666666665554
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=2.1e-11 Score=97.63 Aligned_cols=126 Identities=27% Similarity=0.320 Sum_probs=41.6
Q ss_pred CCCCCceeecCCCCCCHHHHHHHh-cCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCc
Q 011708 322 GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400 (479)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 400 (479)
++.+++.|++.++.++... .++ .+.+|+.|++++|.++... .+..++.|++|++++|.++.........+|+|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccc--chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 4456777777777776532 333 4567777777777776532 3556677777777777777653322235677777
Q ss_pred eeccCCCCCCHHH-HHHHHcCCCCceeecCCCccchhhh---hhhccCcccccccc
Q 011708 401 LNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTL 452 (479)
Q Consensus 401 L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l 452 (479)
|++++| .+.+.. ...+..+++|+.|++.+|++.+... ..+..+|+|+.||-
T Consensus 93 L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 777777 443321 2345567777777777777654321 23456677777664
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.11 E-value=2.4e-11 Score=121.92 Aligned_cols=249 Identities=23% Similarity=0.268 Sum_probs=153.4
Q ss_pred CCCCccEEEecCCC--CChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCC
Q 011708 55 QGSSLLSVDLSGSD--VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (479)
Q Consensus 55 ~~~~l~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (479)
.++++++|-+..+. +.......|..+|.||+|++++|..... .+..++.+-+||+|+++++. + ..+|..+.+++.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~-I-~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTG-I-SHLPSGLGNLKK 619 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCC-c-cccchHHHHHHh
Confidence 46689999999875 4444445588999999999999765544 67889999999999999985 3 367999999999
Q ss_pred CcEEecccccccccccccccCCcCccEEeccCCC-CCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCC----
Q 011708 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT---- 207 (479)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---- 207 (479)
|.+|++..+......+.....+.+||+|.+.... ..+......+.++++|+.+.+..... .....+..+..|.
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhH
Confidence 9999999866555554555669999999998754 23333445556667777776644332 1122233333333
Q ss_pred EEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHh-----c-CCCCcEEecccccCChHHHHHhcCCCCccEE
Q 011708 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-----K-IGSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (479)
Q Consensus 208 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 281 (479)
.+.+.++... .....+..+++|+.|.+.++.+.+....... . ++++..+.+..+..... +.+....++|+.|
T Consensus 698 ~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~-l~~~~f~~~L~~l 775 (889)
T KOG4658|consen 698 SLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD-LTWLLFAPHLTSL 775 (889)
T ss_pred hhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc-cchhhccCcccEE
Confidence 2222222221 1233466788899999988877643321111 1 22233333333221111 1122345778888
Q ss_pred eccCCCCChHHHHHhhCCCCCCeeeccCC
Q 011708 282 NLDSCGIGDEGLVNLTGLTNLESINLSFT 310 (479)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (479)
.+.+|......++....+..++.+.+..+
T Consensus 776 ~l~~~~~~e~~i~~~k~~~~l~~~i~~f~ 804 (889)
T KOG4658|consen 776 SLVSCRLLEDIIPKLKALLELKELILPFN 804 (889)
T ss_pred EEecccccccCCCHHHHhhhcccEEeccc
Confidence 88877655555555555555554444333
No 32
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.07 E-value=7.8e-13 Score=101.15 Aligned_cols=158 Identities=24% Similarity=0.293 Sum_probs=103.3
Q ss_pred CCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEE
Q 011708 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354 (479)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 354 (479)
+.+++.|.+++++++.. ++.++.+.+|+.|++++|++++ .+..++.+++|+.|++.-|.+.. .+..|+.+|.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhc-CccccCCCchhhhhh
Confidence 44556666666665532 3445566777777777776654 34456677777777776654432 335566778888888
Q ss_pred ccCCCCch-hhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCcc
Q 011708 355 LFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433 (479)
Q Consensus 355 l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 433 (479)
+.+|++.+ ..+..|..+..|+.|.+++|.+.-. +..++++.+|+.|.+..| .+. ..+..++.++.|++|.+.+|.+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~l-p~dvg~lt~lqil~lrdn-dll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL-PPDVGKLTNLQILSLRDN-DLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccC-ChhhhhhcceeEEeeccC-chh-hCcHHHHHHHHHHHHhccccee
Confidence 87777654 2344455666777778877776644 555677778888888777 333 3466677778888888888876
Q ss_pred chhhh
Q 011708 434 TSAGL 438 (479)
Q Consensus 434 ~~~~~ 438 (479)
.-.++
T Consensus 186 ~vlpp 190 (264)
T KOG0617|consen 186 TVLPP 190 (264)
T ss_pred eecCh
Confidence 65443
No 33
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.06 E-value=9.5e-10 Score=90.99 Aligned_cols=188 Identities=24% Similarity=0.275 Sum_probs=109.9
Q ss_pred HhcCCCCcEEecccccCChHHH----HHhcCCCCccEEeccCCCCChHHHHH-------------hhCCCCCCeeeccCC
Q 011708 248 FSKIGSLKVLNLGFNEITDECL----VHLKGLTNLESLNLDSCGIGDEGLVN-------------LTGLTNLESINLSFT 310 (479)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~ 310 (479)
+..||+|+.++++.|.+....+ ..+++...|++|.+++|.++...... ...-|.|+.+....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 3456666666666654433222 23455666777777776554322221 123577888888777
Q ss_pred CCCHHHH----HHhhCCCCCceeecCCCCCCHHHHHHH-----hcCCCCCEEEccCCCCchhhHHHH----hcCCCCcee
Q 011708 311 GISDGSL----RKLAGLSSLKSLNLDARQITDTGLAAL-----TSLTGLTHLDLFGARITDSGAAYL----RNFKNLRSL 377 (479)
Q Consensus 311 ~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L 377 (479)
++..... ..+....+|+.+.+..|.+...+...+ ..+.+|+.|++.+|.++-.+...+ ..-+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 6543222 222234578888888888877655433 467888888888887775443333 333567888
Q ss_pred eccCCccChHHHHHHH------ccCCCCceeccCCCC----CCHHHHHHH--HcCCCCceeecCCCccch
Q 011708 378 EICGGGLTDAGVKHIK------DLSSLTLLNLSQNCN----LTDKTLELI--SGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 378 ~l~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~----~~~~~~~~l--~~l~~L~~L~l~~~~~~~ 435 (479)
.+.+|-++..+...+. ..|+|..|...+|.. +..+....+ ...|-|..|.+.+|.+..
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 8888877665444332 247788888777721 111112222 245666677777776655
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.06 E-value=2e-12 Score=98.89 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=7.3
Q ss_pred HhcCCCCcEEecccccC
Q 011708 248 FSKIGSLKVLNLGFNEI 264 (479)
Q Consensus 248 ~~~~~~L~~L~l~~~~~ 264 (479)
++.+..|+.|.+.+|++
T Consensus 169 ig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRL 185 (264)
T ss_pred HHHHHHHHHHhccccee
Confidence 33444444444444443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=1.6e-10 Score=92.65 Aligned_cols=102 Identities=30% Similarity=0.422 Sum_probs=20.8
Q ss_pred CCCeeeccCCCCCHHHHHHhh-CCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeec
Q 011708 301 NLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379 (479)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 379 (479)
++++|++.++.++.. +.++ .+.+|+.|++++|.+... ..+..++.|+.|++++|+++.........+|+|++|.+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 344444444444321 1222 234444555554444432 12334444455555544444432211123444555555
Q ss_pred cCCccChHH-HHHHHccCCCCceeccCC
Q 011708 380 CGGGLTDAG-VKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 380 ~~~~~~~~~-~~~~~~~~~L~~L~l~~~ 406 (479)
++|++.+.. ...+..+|+|+.|++.+|
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 444443321 123334444555555444
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=2.2e-10 Score=96.11 Aligned_cols=130 Identities=25% Similarity=0.344 Sum_probs=73.3
Q ss_pred CCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCce
Q 011708 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401 (479)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 401 (479)
.+..|+.+++++|.++.... ...-.|.++.|++++|.+..... ++.+++|+.|++++|.++.. ..+-.++-+.++|
T Consensus 282 TWq~LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDE-SVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchhhhhh-hhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhh-hhhHhhhcCEeee
Confidence 34556666666665544322 12234666666666666654332 55566666666666655543 3333445666666
Q ss_pred eccCCCCCCHHHHHHHHcCCCCceeecCCCccchhh-hhhhccCcccccccccccccc
Q 011708 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 402 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~ 458 (479)
.+++| .+.+ ...+.++-+|..|++++|++.... .+.++++|.|+.+.+.+|++.
T Consensus 358 ~La~N-~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQN-KIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhh-hHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 66666 3322 334555666666666666665543 245566667777776666654
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=2e-09 Score=90.49 Aligned_cols=226 Identities=20% Similarity=0.170 Sum_probs=134.4
Q ss_pred hCCCCCcEEEcCCCCC-------CChhHHHHHhCCCCCcEEecccccccccccccccCCcCccEEeccCCCCCCcccccc
Q 011708 103 RGLSNLTSLSFRRNNA-------ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175 (479)
Q Consensus 103 ~~~~~L~~L~l~~~~~-------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 175 (479)
..|..|.+|.+++... .....+..+.-+++|+.+.++.|.--. .......-+-|+++.+.+.... ....
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~---~~~~ 254 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQ---DVPS 254 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeeccccc---cccc
Confidence 4567778887776421 122233344556788888888763211 1111122356677766652211 1111
Q ss_pred ccCCCCCcEEEcc-CCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCC
Q 011708 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254 (479)
Q Consensus 176 ~~~~~~L~~L~l~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 254 (479)
+...+.+.-.... ..-.++.....+...+.|+++++++|.+... ..++.-.|.++.|++++|.+.... .+..+++|
T Consensus 255 l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L 331 (490)
T KOG1259|consen 255 LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQL 331 (490)
T ss_pred ccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh--hhhhcccc
Confidence 1111111111111 0111111112233445788888888876554 345556788888888888877653 47778889
Q ss_pred cEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHH-HHHHhhCCCCCceeecCC
Q 011708 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDA 333 (479)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~ 333 (479)
+.|++++|.++.. ..+-..+.++++|.+++|.+.+ ...+.++-+|..|++++|++... ....++++|.|+++.+.+
T Consensus 332 ~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 332 QLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred eEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 9999988876532 2334567788899998886643 44566777888999999988652 345678899999999999
Q ss_pred CCCCH
Q 011708 334 RQITD 338 (479)
Q Consensus 334 ~~~~~ 338 (479)
|.+..
T Consensus 409 NPl~~ 413 (490)
T KOG1259|consen 409 NPLAG 413 (490)
T ss_pred CCccc
Confidence 87654
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.78 E-value=1.7e-07 Score=78.02 Aligned_cols=230 Identities=20% Similarity=0.261 Sum_probs=139.5
Q ss_pred HHHhcCCCCcEEecccccCChHHHHHh----cCCCCccEEeccCCCCC---hHH-------HHHhhCCCCCCeeeccCCC
Q 011708 246 EKFSKIGSLKVLNLGFNEITDECLVHL----KGLTNLESLNLDSCGIG---DEG-------LVNLTGLTNLESINLSFTG 311 (479)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~---~~~-------~~~~~~~~~L~~L~l~~~~ 311 (479)
..+.....+..+++++|.+......++ .+-.+|+..+++....+ +.. ...+.+||+|+.+++++|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 344457788999999998877666554 45567887777765221 222 2334568899999998886
Q ss_pred CCHHHH----HHhhCCCCCceeecCCCCCCHHHHHHH-------------hcCCCCCEEEccCCCCchhhHHH----Hhc
Q 011708 312 ISDGSL----RKLAGLSSLKSLNLDARQITDTGLAAL-------------TSLTGLTHLDLFGARITDSGAAY----LRN 370 (479)
Q Consensus 312 ~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~~~~~~~~~----~~~ 370 (479)
+....+ ..++....|++|.+++|++....-..+ ..-|.|+.+....|++...+... +..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 654333 344567888899998887654321111 23477888888888766533222 222
Q ss_pred CCCCceeeccCCccChHHH-----HHHHccCCCCceeccCCCCCCHHHHHH----HHcCCCCceeecCCCccchhhhhhh
Q 011708 371 FKNLRSLEICGGGLTDAGV-----KHIKDLSSLTLLNLSQNCNLTDKTLEL----ISGLTGLVSLNVSNSRITSAGLRHL 441 (479)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~l 441 (479)
-..|+++.+..|.|...+. ..+..+.+|+.||+..| .++...... +..-+.|++|.+.+|-++..+...+
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 3577888887777665432 23345677888888877 455443333 3334567788888877666555332
Q ss_pred ------ccCcccccccccccccc-----HHHHHHhhhCCCCccccC
Q 011708 442 ------KPLKNLRSLTLESCKVT-----ANDIKRLQSRDLPNLVSF 476 (479)
Q Consensus 442 ------~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~~p~L~~l 476 (479)
...|+|..|....|.+. ......+....+|-|..+
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~l 308 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDL 308 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHH
Confidence 23566777766666332 233444555566665544
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.66 E-value=1.2e-07 Score=93.39 Aligned_cols=203 Identities=24% Similarity=0.305 Sum_probs=105.8
Q ss_pred hcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHH------------HHH-h--hCCCCCCeeeccCC-CC
Q 011708 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG------------LVN-L--TGLTNLESINLSFT-GI 312 (479)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~------------~~~-~--~~~~~L~~L~l~~~-~~ 312 (479)
...-++..+++.+..........+.... |+++.+.+....... ... + ..-.+|++|++++. .+
T Consensus 57 ~~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~ 135 (699)
T KOG3665|consen 57 IRKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELF 135 (699)
T ss_pred hhhheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchh
Confidence 3344677777777665555555454444 777777654211100 000 0 11345666777665 23
Q ss_pred CHHHHHHhh-CCCCCceeecCCCCCCHHHH-HHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccCh-HHH
Q 011708 313 SDGSLRKLA-GLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGV 389 (479)
Q Consensus 313 ~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~ 389 (479)
...++..++ .+|+|++|.+.+-.+..... ....++|+|..|||++++++.. ..++.+++|+.|.+.+-.+.. ...
T Consensus 136 s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l 213 (699)
T KOG3665|consen 136 SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDL 213 (699)
T ss_pred hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhH
Confidence 334444444 35777777776655544332 2234667777777777666654 445666666666666655443 234
Q ss_pred HHHHccCCCCceeccCCCCCCHH--HHHHH---HcCCCCceeecCCCccchhhhhhh-ccCcccccccccc
Q 011708 390 KHIKDLSSLTLLNLSQNCNLTDK--TLELI---SGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLES 454 (479)
Q Consensus 390 ~~~~~~~~L~~L~l~~~~~~~~~--~~~~l---~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~ 454 (479)
..+..+.+|+.||+|........ ....+ ..+|.|+.||+++..+.+...+.+ ..-|+|+.+.+-+
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 45555667777777665332221 11111 235666666666665555443332 3345555555443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.63 E-value=4.3e-09 Score=69.15 Aligned_cols=61 Identities=34% Similarity=0.438 Sum_probs=45.3
Q ss_pred CCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccc
Q 011708 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457 (479)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 457 (479)
|+|++|++++| .++......+.++++|++|++++|.+....+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46677777777 66666666677777777777777777777777777888888888887764
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.61 E-value=1.1e-07 Score=93.43 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=80.5
Q ss_pred CCccEEeccCCCCCh-HHHHHh-hCCCCCCeeeccCCCCCH-HHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCE
Q 011708 276 TNLESLNLDSCGIGD-EGLVNL-TGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352 (479)
Q Consensus 276 ~~L~~L~l~~~~~~~-~~~~~~-~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 352 (479)
.+|++|++++...-. .-+..+ ..+|+|++|.+.+-.+.. .......++|+|..|++++++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 466777776642211 111222 336777777776654432 2233344667777777777666653 44556666666
Q ss_pred EEccCCCCch-hhHHHHhcCCCCceeeccCCccChHH--HH----HHHccCCCCceeccCCCCCCHHHHHHH-HcCCCCc
Q 011708 353 LDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAG--VK----HIKDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLV 424 (479)
Q Consensus 353 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~----~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~ 424 (479)
|.+.+-.+.. .....+..+++|+.|+++........ .. .-..+|.|+.||.|+. .+.......+ ..-++|+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCccHh
Confidence 6666655543 22334456677777777654332221 11 1122567777777766 4554444433 3445555
Q ss_pred eeecCC
Q 011708 425 SLNVSN 430 (479)
Q Consensus 425 ~L~l~~ 430 (479)
.+.+-+
T Consensus 279 ~i~~~~ 284 (699)
T KOG3665|consen 279 QIAALD 284 (699)
T ss_pred hhhhhh
Confidence 555444
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=5.4e-08 Score=81.94 Aligned_cols=82 Identities=28% Similarity=0.458 Sum_probs=48.3
Q ss_pred hcCCCCceeeccCCccChHHH-HHHHccCCCCceeccCCCCCCH-HHHHHHHcCCCCceeecCCCccchhhhhh------
Q 011708 369 RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGLRH------ 440 (479)
Q Consensus 369 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------ 440 (479)
.-+|++..+.++.|.+.+... .....+|.+-.|+++.+ ++.+ ....++.++++|..|.++++++.+.....
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~ll 274 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLL 274 (418)
T ss_pred hhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEE
Confidence 345677777777776655332 23444566667777766 4432 23456677777777777777766633211
Q ss_pred hccCccccccc
Q 011708 441 LKPLKNLRSLT 451 (479)
Q Consensus 441 l~~~~~L~~L~ 451 (479)
+..+++++.|+
T Consensus 275 IaRL~~v~vLN 285 (418)
T KOG2982|consen 275 IARLTKVQVLN 285 (418)
T ss_pred EeeccceEEec
Confidence 24456666664
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.51 E-value=2e-08 Score=65.99 Aligned_cols=59 Identities=29% Similarity=0.447 Sum_probs=34.4
Q ss_pred CCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCC
Q 011708 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (479)
|+|++|++++|++...+...+..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34556666666555555555555666666666666665555555555566666666555
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=3.7e-07 Score=90.18 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=52.9
Q ss_pred CCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecC
Q 011708 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429 (479)
Q Consensus 350 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 429 (479)
++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| .+....+..+.++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECc
Confidence 444555555554444444555555555555555555444444555555555555555 4444445555555555555555
Q ss_pred CCccchhhhhhhcc-Cccccccccccc
Q 011708 430 NSRITSAGLRHLKP-LKNLRSLTLESC 455 (479)
Q Consensus 430 ~~~~~~~~~~~l~~-~~~L~~L~l~~~ 455 (479)
+|.+....+..+.. ..++..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 55554444443332 123344444444
No 45
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.39 E-value=1.4e-06 Score=84.87 Aligned_cols=108 Identities=30% Similarity=0.331 Sum_probs=47.0
Q ss_pred CCCCCEEEecCCCCCHH--HHHHHhCCCCCCEEEccCC--CCChh---hHHHHhcCCCCcEEeccccc-CChHHHHHhc-
Q 011708 203 LQKLTLLNLEGCPVTAA--CLDSLSALGSLFYLNLNRC--QLSDD---GCEKFSKIGSLKVLNLGFNE-ITDECLVHLK- 273 (479)
Q Consensus 203 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~--~~~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~- 273 (479)
++.|+.+.+.++..... .......++.|+.|+++++ ..... .......+++|+.++++++. +++.....+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555422111 1223334555555555542 11111 01122234555555555554 4433333332
Q ss_pred CCCCccEEeccCCC-CChHHHHHh-hCCCCCCeeeccCC
Q 011708 274 GLTNLESLNLDSCG-IGDEGLVNL-TGLTNLESINLSFT 310 (479)
Q Consensus 274 ~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~ 310 (479)
.+++|+.|.+.+|. +++.+...+ ..++.|++|++++|
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 25555555555553 344443333 33555555555555
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=1.4e-07 Score=79.60 Aligned_cols=227 Identities=21% Similarity=0.180 Sum_probs=116.1
Q ss_pred CCCEEEccCCCCChhhH-HHHh-cCCCCcEEecccccCChHH--HHHhcCCCCccEEeccCCCCChHHHHHh-hCCCCCC
Q 011708 229 SLFYLNLNRCQLSDDGC-EKFS-KIGSLKVLNLGFNEITDEC--LVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLTNLE 303 (479)
Q Consensus 229 ~L~~L~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~ 303 (479)
.++.+.+.++.+..... ..++ .+..++.+++.+|.+.++. ...+.++|.|+.|+++.|++.... ..+ ....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceE
Confidence 44455555655544321 2222 4456667777776665432 233456666666666666544321 111 1233444
Q ss_pred eeeccCCCCCHH-HHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCC
Q 011708 304 SINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382 (479)
Q Consensus 304 ~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 382 (479)
.|-+.+..+.-. ....+..+|.++.|+++.|. ++.+.+..+.... .-+.++++...+|
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~--------------~rq~n~Dd~c~e~-------~s~~v~tlh~~~c 183 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS--------------LRQLNLDDNCIED-------WSTEVLTLHQLPC 183 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccch--------------hhhhccccccccc-------cchhhhhhhcCCc
Confidence 555444433211 11122233444444444331 1112222221111 2234555555555
Q ss_pred ccChHH--HHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhh-hhhhccCccccccccccccccH
Q 011708 383 GLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 383 ~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~ 459 (479)
...-.. ......+|++..+-+..|+--+.........++.+.-|++..+++.+.. ..++..+|.|.-|.++.+++.+
T Consensus 184 ~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 184 LEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 322211 1122336888888888885334444455667788888888888876644 4677888899999999887754
Q ss_pred H----HHHHhhhCCCCccccCC
Q 011708 460 N----DIKRLQSRDLPNLVSFR 477 (479)
Q Consensus 460 ~----~~~~~~~~~~p~L~~l~ 477 (479)
. .-+.+..+.+|+++.|+
T Consensus 264 ~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 264 PLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cccCCcceEEEEeeccceEEec
Confidence 2 22233345667766654
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=4.8e-08 Score=92.15 Aligned_cols=179 Identities=26% Similarity=0.281 Sum_probs=100.7
Q ss_pred HHHHhcCCCCcEEecccccCChHHHHHhcC-CCCccEEeccCCCCChHHHHHhhC----------CCCCCeeeccCCCCC
Q 011708 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNLTG----------LTNLESINLSFTGIS 313 (479)
Q Consensus 245 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~----------~~~L~~L~l~~~~~~ 313 (479)
+-.+..+..|+.|.++++.+... ..+.. -..|++|.=. +.. +.....+.. .-.|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl-~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSL-DALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccH-HHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 33455677888888888876531 11111 1223333211 111 111111110 123444555555443
Q ss_pred HHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHH
Q 011708 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393 (479)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 393 (479)
. ....+.-++.++.|+++.|++.+.. .+..++.|++|+|++|.+...+.-....|. |+.|.+.+|.++. ...+.
T Consensus 178 ~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie 251 (1096)
T KOG1859|consen 178 L-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRGIE 251 (1096)
T ss_pred h-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh--hhhHH
Confidence 2 2334445577888888888777633 566778888888888877655433333444 7888888877765 45567
Q ss_pred ccCCCCceeccCCCCCCHH-HHHHHHcCCCCceeecCCCccc
Q 011708 394 DLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
++.+|+.||+++| -+.+. -..-++.+..|+.|.+.||++-
T Consensus 252 ~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7778888888887 22211 1223456677777777777653
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.32 E-value=6.4e-07 Score=84.44 Aligned_cols=197 Identities=32% Similarity=0.409 Sum_probs=106.6
Q ss_pred EEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCC-CCccEEeccCCCCChHHHHHhhCCCCCCeeeccCC
Q 011708 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310 (479)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (479)
.+....+.+.... ..+...+.+..+++.++.++... ...... ++|+.|+++++.+... +..+..++.|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccCc-cccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence 4555555542221 23334466777777777665432 223333 2677777777765532 134556677777777777
Q ss_pred CCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHH
Q 011708 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390 (479)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 390 (479)
.+.+... .....+.|+.|+++++.+....... .....|+++.+++|..... +..+..+.++..+.+.++++... +.
T Consensus 174 ~l~~l~~-~~~~~~~L~~L~ls~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLSDLPK-LLSNLSNLNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhhhhh-hhhhhhhhhheeccCCccccCchhh-hhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeec-cc
Confidence 6655332 1225566777777776665544321 1223466666666642221 22344555666666666655442 33
Q ss_pred HHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhh
Q 011708 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438 (479)
Q Consensus 391 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 438 (479)
.+..++++++|++++| .++.... +....+++.|+++++.+....+
T Consensus 250 ~~~~l~~l~~L~~s~n-~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNN-QISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceeccccc-ccccccc--ccccCccCEEeccCccccccch
Confidence 4455566666666666 4443332 5566666666666666555433
No 49
>PLN03150 hypothetical protein; Provisional
Probab=98.31 E-value=9.8e-07 Score=87.27 Aligned_cols=106 Identities=22% Similarity=0.333 Sum_probs=77.6
Q ss_pred CceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccC
Q 011708 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405 (479)
Q Consensus 326 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 405 (479)
++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 66777777777665566677778888888888877766666677788888888888888777777777888888888888
Q ss_pred CCCCCHHHHHHHHc-CCCCceeecCCCc
Q 011708 406 NCNLTDKTLELISG-LTGLVSLNVSNSR 432 (479)
Q Consensus 406 ~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 432 (479)
| .+....+..+.. ..++..+++.+|+
T Consensus 500 N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 N-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred C-cccccCChHHhhccccCceEEecCCc
Confidence 7 566666666644 3456677777765
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.30 E-value=7.1e-07 Score=84.14 Aligned_cols=198 Identities=27% Similarity=0.360 Sum_probs=136.8
Q ss_pred CEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcC-CCCcEEecccccCChHHHHHhcCCCCccEEeccC
Q 011708 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (479)
Q Consensus 207 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (479)
..+....+.+.... ..+.....++.+++.++.+....+ ..... ++|+.|+++++.+... +..+..+++|+.|+++.
T Consensus 96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccCc-hhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchhhh-hhhhhccccccccccCC
Confidence 35666666553322 234455788999999888776542 23344 3899999999887643 24567889999999999
Q ss_pred CCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhH
Q 011708 286 CGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365 (479)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 365 (479)
|.+.+.. ......+.|+.|+++++.+...... +.....|+++.++++.... .+..+..+.++..+.+.++++... +
T Consensus 173 N~l~~l~-~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~-~ 248 (394)
T COG4886 173 NDLSDLP-KLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDL-P 248 (394)
T ss_pred chhhhhh-hhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeec-c
Confidence 9877543 2233678899999999988764332 2344568999998884222 233455677788888888877653 3
Q ss_pred HHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHH
Q 011708 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414 (479)
Q Consensus 366 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 414 (479)
..+..++++++|++++|.++.... +....+++.|+++++ .+....+
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n-~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGN-SLSNALP 294 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCc-cccccch
Confidence 456778889999999998888655 777889999999998 4443333
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.28 E-value=4e-06 Score=81.65 Aligned_cols=133 Identities=33% Similarity=0.412 Sum_probs=78.4
Q ss_pred hCCCCCCEEEccCCC-CChh-hHHHHhcCCCCcEEecccc-cC-ChH---HHHHhcCCCCccEEeccCCC-CChHHHHHh
Q 011708 225 SALGSLFYLNLNRCQ-LSDD-GCEKFSKIGSLKVLNLGFN-EI-TDE---CLVHLKGLTNLESLNLDSCG-IGDEGLVNL 296 (479)
Q Consensus 225 ~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~-~~-~~~---~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~ 296 (479)
..++.|+.+.+.++. +... .......++.|+.|+++++ .. ... .......+.+|+.++++++. +++.....+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 346788888887773 3332 2344456788888888762 11 111 11223455777888887775 666665555
Q ss_pred hC-CCCCCeeeccCCC-CCHHHHHHhh-CCCCCceeecCCCCCC-HHHHHH-HhcCCCCCEEEccC
Q 011708 297 TG-LTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQIT-DTGLAA-LTSLTGLTHLDLFG 357 (479)
Q Consensus 297 ~~-~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~~-~~~~~~-l~~~~~L~~L~l~~ 357 (479)
.. +++|+.|.+..|. +++.....++ .++.|++|++++|... +.+... ..+|++++.|.+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 44 7778887776665 5666666555 4677888888776543 322222 23466666655433
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=6e-08 Score=91.44 Aligned_cols=242 Identities=30% Similarity=0.310 Sum_probs=108.3
Q ss_pred CCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEe
Q 011708 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258 (479)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 258 (479)
+..++.+.+..+.+.. ....+..+++|+.+++.++.+..... .+..+++|++|++++|.++.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 3444445554444442 12234555666666666665544311 144566666666666666543 2334444566666
Q ss_pred cccccCChHHHHHhcCCCCccEEeccCCCCChHHH-HHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCC
Q 011708 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337 (479)
Q Consensus 259 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (479)
+.+|.+... ..+..++.|+.++++++.+..... . ...+.+++.+.+.++.+..... +..+..+..+.+..+.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccce
Confidence 666655432 223345556666666665544332 1 3445555555555554432111 111122222233333332
Q ss_pred HHHHHHHhcCC--CCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHH---
Q 011708 338 DTGLAALTSLT--GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK--- 412 (479)
Q Consensus 338 ~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--- 412 (479)
... .+.... .|+.++++++++.... ..+..++.+..+++.++.+... ..+...+.+..+....+. +...
T Consensus 222 ~~~--~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~ 295 (414)
T KOG0531|consen 222 KLE--GLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNK-LALSEAI 295 (414)
T ss_pred ecc--CcccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcch-hcchhhh
Confidence 211 011111 1555566665554321 2334455555555555544432 122223344444444441 1100
Q ss_pred HHH-HHHcCCCCceeecCCCccch
Q 011708 413 TLE-LISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 413 ~~~-~l~~l~~L~~L~l~~~~~~~ 435 (479)
... .....+.++.+.+..++...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hccccccccccccccccccCcccc
Confidence 011 12344555566666555433
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=9.5e-08 Score=90.24 Aligned_cols=179 Identities=23% Similarity=0.286 Sum_probs=117.6
Q ss_pred HHHhcCCCCccEEeccCCCCChH-HHHHhhCCCCCCeeeccCCCCC---HHHHHHhh------CCCCCceeecCCCCCCH
Q 011708 269 LVHLKGLTNLESLNLDSCGIGDE-GLVNLTGLTNLESINLSFTGIS---DGSLRKLA------GLSSLKSLNLDARQITD 338 (479)
Q Consensus 269 ~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~------~~~~L~~L~l~~~~~~~ 338 (479)
|..+..+..|+.|.+.+|.+... +...+ -..|+.|.-. +..+ .......+ .+-.|.+.+.++|.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~l--r~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQEL--RHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHH--HHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence 33455678899999999877641 11111 1234444322 2111 11111111 12456666667666544
Q ss_pred HHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHH
Q 011708 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418 (479)
Q Consensus 339 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 418 (479)
.. ..+.-++.++.|+++.|+++... .+..+++|++|+++.|.+...+--....|. |+.|.+.|| .++. ...+.
T Consensus 179 mD-~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~t--L~gie 251 (1096)
T KOG1859|consen 179 MD-ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTT--LRGIE 251 (1096)
T ss_pred HH-HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHh--hhhHH
Confidence 22 33445688999999999998754 678999999999999988765443333444 999999999 4554 45578
Q ss_pred cCCCCceeecCCCccchhh-hhhhccCccccccccccccc
Q 011708 419 GLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKV 457 (479)
Q Consensus 419 ~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l 457 (479)
++.+|+.||+++|-+.+.. ...+..+..|+.|++.+|++
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9999999999999765532 34456678999999999987
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=1.1e-07 Score=89.64 Aligned_cols=218 Identities=33% Similarity=0.339 Sum_probs=134.0
Q ss_pred CCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCee
Q 011708 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (479)
.+..++.+.++.+.+.. ....+..+.++..+++..|.+..... .+..+++|+.|++++|.++.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhh
Confidence 34556666666665554 12335667788888888877654321 155677888888888877652 334455668888
Q ss_pred eccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHH-HHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCcc
Q 011708 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384 (479)
Q Consensus 306 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 384 (479)
++.+|.+... ..+..++.|+.++++++.+..... . ...+.+++.+.+.+|.+.... .+.....+..+.+..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence 8888877642 234446778888888877766544 2 356677788888777665422 122223334445555555
Q ss_pred ChHHHHHHHccC--CCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCcccccccccccccc
Q 011708 385 TDAGVKHIKDLS--SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 385 ~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 458 (479)
..... +...+ .|+.++++++ .+.... ..+..+..+..|++.++.+... ..+...+.+..+...++++.
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n-~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGN-RISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred eeccC--cccchhHHHHHHhcccC-cccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 54321 11222 2788888888 444321 4456778888888888876553 33455667777777777765
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=1.5e-06 Score=64.67 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=78.9
Q ss_pred CCCceeecCCCCCCHH--HHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCce
Q 011708 324 SSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401 (479)
Q Consensus 324 ~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 401 (479)
..+..++++.|++... ....+..-..|...++++|.+.+.+...-..+|.++.+++.+|++++.+.. ++.+|.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhc
Confidence 4566777777766532 233444556777788888888877666667778888888888888877444 7888888888
Q ss_pred eccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhh
Q 011708 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439 (479)
Q Consensus 402 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 439 (479)
++++| .+.. .+..+..+.++-.|+..+|.....+..
T Consensus 106 Nl~~N-~l~~-~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFN-PLNA-EPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccC-cccc-chHHHHHHHhHHHhcCCCCccccCcHH
Confidence 88888 3442 344445577788888888876665554
No 56
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.97 E-value=2.1e-07 Score=85.55 Aligned_cols=190 Identities=22% Similarity=0.220 Sum_probs=101.4
Q ss_pred EEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCC
Q 011708 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335 (479)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 335 (479)
..+++.|++. ..+..+..+..|+.+.+..|.+.. .+..++++..|..++++.|.+... +..+..+| |+.|-+++|+
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhhcC-ChhhhcCc-ceeEEEecCc
Confidence 3445555543 223334444555556665554432 234455666667777776665432 22333443 6666666666
Q ss_pred CCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHH
Q 011708 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415 (479)
Q Consensus 336 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 415 (479)
++..+. .++..+.|..|+.+.|.+... +..+.++.+|+.|.+..|.+...... +.. -.|..||++.| ++. .+|.
T Consensus 155 l~~lp~-~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~lp~E-l~~-LpLi~lDfScN-kis-~iPv 228 (722)
T KOG0532|consen 155 LTSLPE-EIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLEDLPEE-LCS-LPLIRLDFSCN-KIS-YLPV 228 (722)
T ss_pred cccCCc-ccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhhCCHH-HhC-CceeeeecccC-cee-ecch
Confidence 554332 233456666666666666554 33345566666666666666554332 232 24666677666 554 3455
Q ss_pred HHHcCCCCceeecCCCccchhhhhhh--ccCccccccccccc
Q 011708 416 LISGLTGLVSLNVSNSRITSAGLRHL--KPLKNLRSLTLESC 455 (479)
Q Consensus 416 ~l~~l~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~ 455 (479)
.|.+++.|++|-+.+|++...+.+.. +...-.++|++.-|
T Consensus 229 ~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 56666777777777776665332211 22344556666666
No 57
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.92 E-value=4e-07 Score=83.71 Aligned_cols=191 Identities=19% Similarity=0.175 Sum_probs=111.6
Q ss_pred cEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccc
Q 011708 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262 (479)
Q Consensus 183 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (479)
...+++.|++... +..+..+..|+.+.++.|.+... +..+.++..|.+++++.|.++... ..++.++ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS~lp-~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFSEL-PEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLSHLP-DGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccccC-chHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhhcCC-hhhhcCc-ceeEEEecC
Confidence 3455556655532 33344444566666666554433 445666777777777777665443 3344443 677777777
Q ss_pred cCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHH
Q 011708 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342 (479)
Q Consensus 263 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 342 (479)
.++ ..+..++..++|..|+.+.|.+.. .+..++.+.+|+.|.+..|.+.... ..+. .-.|..|++++|++...+ .
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~lp-~El~-~LpLi~lDfScNkis~iP-v 228 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLEDLP-EELC-SLPLIRLDFSCNKISYLP-V 228 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhhCC-HHHh-CCceeeeecccCceeecc-h
Confidence 665 334455566777777777775543 3445666677777777777665533 3334 334777777777776544 3
Q ss_pred HHhcCCCCCEEEccCCCCchhhHHHH--hcCCCCceeeccCC
Q 011708 343 ALTSLTGLTHLDLFGARITDSGAAYL--RNFKNLRSLEICGG 382 (479)
Q Consensus 343 ~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~ 382 (479)
.|..|..|++|-|.+|.+..-+.... +...-.++|+...|
T Consensus 229 ~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 45667777777777777765433222 22233455555544
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=5.6e-06 Score=69.43 Aligned_cols=110 Identities=19% Similarity=0.305 Sum_probs=74.6
Q ss_pred CCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHH-HHHHHcCCCCcee
Q 011708 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSL 426 (479)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L 426 (479)
.+.++|+..+|.+.++. ....+|.|+.|.++-|+++.. ..+..|.+|++|.|..| .|.+.. ...+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 45677888888887642 346788888888888888774 44667888888888887 454432 3456788888888
Q ss_pred ecCCCccchhhh-----hhhccCccccccccccccccHHHHHH
Q 011708 427 NVSNSRITSAGL-----RHLKPLKNLRSLTLESCKVTANDIKR 464 (479)
Q Consensus 427 ~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~~~l~~~~~~~ 464 (479)
-+..|+-..... ..+..+|+|++|+ +-+++......
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle~ 134 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELEE 134 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHHH
Confidence 888776433322 2356678888875 33666655553
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=1.3e-05 Score=59.80 Aligned_cols=103 Identities=21% Similarity=0.210 Sum_probs=56.1
Q ss_pred CCeeeccCCCCCH--HHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeec
Q 011708 302 LESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379 (479)
Q Consensus 302 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 379 (479)
+-.++++.|.+.. .....+..-..|+..++++|.+.+.+...-..++.++.|++.+|.+.+.+.+ +..+|.|+.+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence 3344555553321 1223344445566666666666555544444555666666666666655443 566666666666
Q ss_pred cCCccChHHHHHHHccCCCCceeccCC
Q 011708 380 CGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (479)
..|.+... +..+..+.+|-.|+..+|
T Consensus 108 ~~N~l~~~-p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 108 RFNPLNAE-PRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccCccccc-hHHHHHHHhHHHhcCCCC
Confidence 66665544 344444555555655555
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.68 E-value=1.3e-05 Score=63.96 Aligned_cols=107 Identities=19% Similarity=0.223 Sum_probs=81.4
Q ss_pred CCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHH-HHHHHcCCCCce
Q 011708 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVS 425 (479)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~ 425 (479)
......+++++|.+... ..+..++.|.+|.+.+|.++...+..-.-+|.|+.|.+.+| .+.... ..-+..|+.|+.
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccce
Confidence 35677889998877643 34678889999999999999887776667789999999998 565433 234678899999
Q ss_pred eecCCCccchhhh---hhhccCcccccccccccc
Q 011708 426 LNVSNSRITSAGL---RHLKPLKNLRSLTLESCK 456 (479)
Q Consensus 426 L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~ 456 (479)
|.+-+|++.+..- -.+..+|+|+.|+..+-.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9999998766432 234678999999876653
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=5.5e-05 Score=60.61 Aligned_cols=83 Identities=23% Similarity=0.280 Sum_probs=51.5
Q ss_pred CCEEEccCCCCchhhHHHHhcCCCCceeeccCCccC-hHHHHHHHc-cCCCCceeccCCCCCCHHHHHHHHcCCCCceee
Q 011708 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427 (479)
Q Consensus 350 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 427 (479)
++.++-+++.+...+...+..++.++.|.+.+|.-. +.....+.+ .++|+.|+|++|+.|++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455666666666666666666777777777666432 222222322 366777777777777776666666677777776
Q ss_pred cCCCc
Q 011708 428 VSNSR 432 (479)
Q Consensus 428 l~~~~ 432 (479)
+.+-+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 66654
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=1.4e-05 Score=67.04 Aligned_cols=79 Identities=28% Similarity=0.326 Sum_probs=39.9
Q ss_pred CCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhh-HHHHhcCCCCceee
Q 011708 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLE 378 (479)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 378 (479)
.+.+.|+.++|++++... ...++.|+.|.++-|.++.. ..+..|++|++|+|..|.+.+.. ...+.++|+|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 344555555555554332 23555555555555555442 22334555555555555554432 23345555555555
Q ss_pred ccCC
Q 011708 379 ICGG 382 (479)
Q Consensus 379 l~~~ 382 (479)
+..|
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 5544
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=4e-05 Score=61.38 Aligned_cols=83 Identities=33% Similarity=0.441 Sum_probs=61.2
Q ss_pred CccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhC-CCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
.++.++-+++.|..+....+..++.++.|.+.+|..+.+...+.+++ .++|+.|++++|..+++.+...+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 36677777777777777777777888888888777777776666654 46778888887777777777777777777777
Q ss_pred eccc
Q 011708 137 DLER 140 (479)
Q Consensus 137 ~l~~ 140 (479)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7665
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.53 E-value=8.2e-05 Score=44.44 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=15.8
Q ss_pred CCceeecCCCccchhhhhhhccCcccccccccccccc
Q 011708 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 458 (479)
+|++|++++|.+.+.++ .+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 34445555554444322 2444555555555555443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.44 E-value=2.9e-05 Score=60.19 Aligned_cols=119 Identities=22% Similarity=0.317 Sum_probs=34.3
Q ss_pred CCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCce
Q 011708 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401 (479)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 401 (479)
.+++|+.+.+.. .+...+...+..+++|+.+.+.++ +...+...+..+++++.+.+.+ .+.......+..+++|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 334444444432 222223333344444444444432 3333333344444444444432 2222222233334444444
Q ss_pred eccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccc
Q 011708 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447 (479)
Q Consensus 402 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 447 (479)
++..+ +.......+.++ .|+.+.+.+ .+.......|..|++|
T Consensus 87 ~~~~~--~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 87 DIPSN--ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EETTT---BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccCcc--ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 44332 222223333343 444444443 2233333444444443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.44 E-value=0.00022 Score=55.25 Aligned_cols=60 Identities=28% Similarity=0.464 Sum_probs=21.1
Q ss_pred hhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecc
Q 011708 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (479)
Q Consensus 76 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (479)
+|.+|++|+.+.+.. .+.......|..+++|+.+.+.++ +......+|.++++|+.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 344455555555442 233333344444445555555442 222223334444444554443
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.44 E-value=0.00022 Score=42.61 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=16.6
Q ss_pred CCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccC
Q 011708 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385 (479)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 385 (479)
+|++|++++|++++.++ .+..+++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 44555555555554332 2445555555555555444
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00011 Score=58.81 Aligned_cols=109 Identities=20% Similarity=0.282 Sum_probs=83.8
Q ss_pred CCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHH-HHHHHccCCCCcee
Q 011708 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLN 402 (479)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 402 (479)
.+...+++.+|.+.. ...|+.++.|.+|.+..|+++...+..-..+|+|+.|.+.+|.+.... ...+..||+|+.|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 567788888887654 445678899999999999999876665567899999999999887754 45677899999999
Q ss_pred ccCCCCCCHHHH---HHHHcCCCCceeecCCCccch
Q 011708 403 LSQNCNLTDKTL---ELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 403 l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~ 435 (479)
+-+| .++..-- ..+..+++|+.||+.+-...+
T Consensus 120 ll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 120 LLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred ecCC-chhcccCceeEEEEecCcceEeehhhhhHHH
Confidence 9998 3333221 235689999999998775433
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.00017 Score=60.45 Aligned_cols=62 Identities=24% Similarity=0.195 Sum_probs=25.9
Q ss_pred hcCCCCCEEEecCC--CCCHHHHHHHhCCCCCCEEEccCCCCCh-hhHHHHhcCCCCcEEecccc
Q 011708 201 KGLQKLTLLNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFN 262 (479)
Q Consensus 201 ~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 262 (479)
..+++|+.|.++.| +....+......+|+|+++++++|++.. .....+..+.+|..|++.+|
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 33445555555544 2222222223334555555555554442 11122233444444444444
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.00024 Score=59.55 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=16.3
Q ss_pred CCCCceeeccCCccChH-HHHHHHccCCCCceeccCC
Q 011708 371 FKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 371 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~ 406 (479)
+|+|+++.+++|++... ....+..+++|..|++.+|
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 35555555555544421 1223334445555555555
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.90 E-value=0.0032 Score=57.69 Aligned_cols=72 Identities=25% Similarity=0.312 Sum_probs=41.1
Q ss_pred hccCCCCCeEeccCCCCCChhhhHhhhCC-CCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCc
Q 011708 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155 (479)
Q Consensus 77 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 155 (479)
+..|++++.|++++| .++.. ..+ .+|+.|.+++|..+. ..|..+. ++|++|.+++|..+...+ .
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sL-----P~LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~sLP------~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESL-----PVLPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEISGLP------E 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCccc-----CCCCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCcccccccc------c
Confidence 456788888888876 34332 123 358888887775542 2233332 467777777765443332 2
Q ss_pred CccEEecc
Q 011708 156 KLESLNIK 163 (479)
Q Consensus 156 ~L~~L~l~ 163 (479)
.|+.|++.
T Consensus 113 sLe~L~L~ 120 (426)
T PRK15386 113 SVRSLEIK 120 (426)
T ss_pred ccceEEeC
Confidence 45555554
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.85 E-value=0.00034 Score=66.32 Aligned_cols=183 Identities=30% Similarity=0.408 Sum_probs=99.4
Q ss_pred CcEEecccccCChHHHH----HhcCCCCccEEeccCCCCChHHHHHhhC----C-CCCCeeeccCCCCCHHHHHH----h
Q 011708 254 LKVLNLGFNEITDECLV----HLKGLTNLESLNLDSCGIGDEGLVNLTG----L-TNLESINLSFTGISDGSLRK----L 320 (479)
Q Consensus 254 L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~-~~L~~L~l~~~~~~~~~~~~----l 320 (479)
+..+.+.+|.+...... .+...+.|+.|+++++.+++.....+.+ . +.++.|.+..|.++...... +
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66677777766554333 3456778888888888777655544432 2 45666777777665443333 3
Q ss_pred hCCCCCceeecCCCCCCHHHHHH----Hh----cCCCCCEEEccCCCCchhhHH----HHhcCCC-CceeeccCCccChH
Q 011708 321 AGLSSLKSLNLDARQITDTGLAA----LT----SLTGLTHLDLFGARITDSGAA----YLRNFKN-LRSLEICGGGLTDA 387 (479)
Q Consensus 321 ~~~~~L~~L~l~~~~~~~~~~~~----l~----~~~~L~~L~l~~~~~~~~~~~----~~~~~~~-L~~L~l~~~~~~~~ 387 (479)
.....++.++++.|.+...+... +. ...++++|.+.+|.++..... .+...++ +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 34667777777777665433221 22 234566677766665543222 2233333 55566666665554
Q ss_pred HHHHHH----cc-CCCCceeccCCCCCCHHHHH----HHHcCCCCceeecCCCccchhh
Q 011708 388 GVKHIK----DL-SSLTLLNLSQNCNLTDKTLE----LISGLTGLVSLNVSNSRITSAG 437 (479)
Q Consensus 388 ~~~~~~----~~-~~L~~L~l~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~ 437 (479)
....+. .+ +.+++++++.| .+++.... .+..++.++++.++.|++....
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 332221 12 34566666666 44433322 2334556666666666555543
No 73
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.75 E-value=0.0028 Score=58.10 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=28.9
Q ss_pred HhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCC
Q 011708 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310 (479)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (479)
+..+.+++.|++++|.+... | .-.++|+.|.+++|.--...+..+ .++|+.|.+++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 34456777777777655432 2 122357777776653211222212 235666666655
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.56 E-value=0.00068 Score=64.35 Aligned_cols=234 Identities=29% Similarity=0.383 Sum_probs=150.0
Q ss_pred CCEEEccCCCCChhhHH----HHhcCCCCcEEecccccCChHHHHHh----cCC-CCccEEeccCCCCChHHH----HHh
Q 011708 230 LFYLNLNRCQLSDDGCE----KFSKIGSLKVLNLGFNEITDECLVHL----KGL-TNLESLNLDSCGIGDEGL----VNL 296 (479)
Q Consensus 230 L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~~~~~~~~~----~~~ 296 (479)
+..+.+.+|.+...... .+...+.|..|++++|.+.+.....+ ... ..++.|.+..|.++..+. ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 77888888877765443 44577899999999998876544433 222 567788888887765443 344
Q ss_pred hCCCCCCeeeccCCCCCHHHH----HHhh----CCCCCceeecCCCCCCHHHHHH----HhcCCC-CCEEEccCCCCchh
Q 011708 297 TGLTNLESINLSFTGISDGSL----RKLA----GLSSLKSLNLDARQITDTGLAA----LTSLTG-LTHLDLFGARITDS 363 (479)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~----~~l~----~~~~L~~L~l~~~~~~~~~~~~----l~~~~~-L~~L~l~~~~~~~~ 363 (479)
.....++.++++.|.+..... ..+. ...++++|++..|.++...... +...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 557888899998886643222 1222 4678999999999888655433 334455 77799999988876
Q ss_pred hHHHH----hcC-CCCceeeccCCccChHHHHHH----HccCCCCceeccCCCCCCHHHHHH----HHcCCCCceeecCC
Q 011708 364 GAAYL----RNF-KNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTLEL----ISGLTGLVSLNVSN 430 (479)
Q Consensus 364 ~~~~~----~~~-~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~----l~~l~~L~~L~l~~ 430 (479)
+...+ ... +.++.+++..|.+++.....+ ..++.++.+.+++| .+.+..... +.....+..+.+.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhhhcccchhhhccc
Confidence 54433 334 577999999999887655444 45689999999999 444443322 23445566666665
Q ss_pred Cccchhhhhh-----hccCccccccccccccccHHHHHH
Q 011708 431 SRITSAGLRH-----LKPLKNLRSLTLESCKVTANDIKR 464 (479)
Q Consensus 431 ~~~~~~~~~~-----l~~~~~L~~L~l~~~~l~~~~~~~ 464 (479)
+.....+... ...-..+....++++...+.....
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (478)
T KOG4308|consen 328 TGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLAL 366 (478)
T ss_pred cCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHH
Confidence 5443333221 122234445566666655554443
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.75 E-value=0.033 Score=28.72 Aligned_cols=23 Identities=48% Similarity=0.931 Sum_probs=13.4
Q ss_pred CCCCCeEeccCCCCCChhhhHhh
Q 011708 80 CSNLQSLDFNFCIQISDGGLEHL 102 (479)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~l 102 (479)
|++|+.|++++|..+++.+...+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 45666666666666666555444
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.50 E-value=0.024 Score=28.56 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=13.4
Q ss_pred CccccccccccccccHHHHHHh
Q 011708 444 LKNLRSLTLESCKVTANDIKRL 465 (479)
Q Consensus 444 ~~~L~~L~l~~~~l~~~~~~~~ 465 (479)
+++|++|++++|+++..++.++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3567777777777777776655
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.37 E-value=0.046 Score=27.50 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=12.0
Q ss_pred CCCceeecCCCccchhhhhhh
Q 011708 421 TGLVSLNVSNSRITSAGLRHL 441 (479)
Q Consensus 421 ~~L~~L~l~~~~~~~~~~~~l 441 (479)
++|++|++++|.+.+.+...+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 566677777777666655544
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.00 E-value=0.15 Score=26.23 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=18.6
Q ss_pred CCCCcEEEcCCCCCCChhHHHHHh
Q 011708 105 LSNLTSLSFRRNNAITAQGMKAFA 128 (479)
Q Consensus 105 ~~~L~~L~l~~~~~~~~~~~~~~~ 128 (479)
|++|++|++++|..+++.....+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 578889999998888877666554
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.65 E-value=0.083 Score=25.92 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=8.6
Q ss_pred CCceeecCCCccch
Q 011708 422 GLVSLNVSNSRITS 435 (479)
Q Consensus 422 ~L~~L~l~~~~~~~ 435 (479)
+|++|++++|.+..
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 35666666666664
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.09 E-value=0.26 Score=22.32 Aligned_cols=12 Identities=42% Similarity=0.595 Sum_probs=4.1
Q ss_pred CCCEEEccCCCC
Q 011708 349 GLTHLDLFGARI 360 (479)
Q Consensus 349 ~L~~L~l~~~~~ 360 (479)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.40 E-value=0.55 Score=24.64 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=15.8
Q ss_pred ccccccccccccccHHHHHHhh
Q 011708 445 KNLRSLTLESCKVTANDIKRLQ 466 (479)
Q Consensus 445 ~~L~~L~l~~~~l~~~~~~~~~ 466 (479)
++|++|++++|.+...+...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 4677777777777777776654
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.25 E-value=0.94 Score=23.11 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=10.1
Q ss_pred CCCceeecCCCccchhhhh
Q 011708 421 TGLVSLNVSNSRITSAGLR 439 (479)
Q Consensus 421 ~~L~~L~l~~~~~~~~~~~ 439 (479)
++|+.|++++|.+...+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555566665555554433
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.25 E-value=0.94 Score=23.11 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=10.1
Q ss_pred CCCceeecCCCccchhhhh
Q 011708 421 TGLVSLNVSNSRITSAGLR 439 (479)
Q Consensus 421 ~~L~~L~l~~~~~~~~~~~ 439 (479)
++|+.|++++|.+...+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555566665555554433
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.00 E-value=4.2 Score=38.91 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=49.1
Q ss_pred hcCCCCceeeccCCccChHHH--HHHHccCCCCceeccCCCCCCHHHHHHHH--cCCCCceeecCCCccchhhh---hhh
Q 011708 369 RNFKNLRSLEICGGGLTDAGV--KHIKDLSSLTLLNLSQNCNLTDKTLELIS--GLTGLVSLNVSNSRITSAGL---RHL 441 (479)
Q Consensus 369 ~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~---~~l 441 (479)
.+.|.+..+.+++|.+..... ......|.|+.|+|++|....+ ...++. +..-|++|-+.||++..... +.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 567888889999987765322 2223468899999998832222 222333 34567888888887654221 111
Q ss_pred ----ccCccccccc
Q 011708 442 ----KPLKNLRSLT 451 (479)
Q Consensus 442 ----~~~~~L~~L~ 451 (479)
..+|+|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 2466666654
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=56.84 E-value=7.7 Score=19.95 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=7.6
Q ss_pred CCCceeecCCCccc
Q 011708 421 TGLVSLNVSNSRIT 434 (479)
Q Consensus 421 ~~L~~L~l~~~~~~ 434 (479)
++|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555543
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=53.09 E-value=0.66 Score=38.86 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=47.7
Q ss_pred HhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCC
Q 011708 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423 (479)
Q Consensus 344 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 423 (479)
+..+...+.|+++.+++...+. .+..+..+..|+++.+.+.-. +..+.+...+..++..+| +.. ..|..+.+.+.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n-~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKN-NHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhcc-chh-hCCccccccCCc
Confidence 3455666777777665544322 233345566666666554432 334444455555665555 222 345555666777
Q ss_pred ceeecCCCccch
Q 011708 424 VSLNVSNSRITS 435 (479)
Q Consensus 424 ~~L~l~~~~~~~ 435 (479)
++++..++++..
T Consensus 114 k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 114 KKNEQKKTEFFR 125 (326)
T ss_pred chhhhccCcchH
Confidence 777777666444
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.78 E-value=29 Score=33.55 Aligned_cols=89 Identities=20% Similarity=0.152 Sum_probs=56.1
Q ss_pred HHHHHHhCCCCccEEEecCCCCChhhh-hhh-ccCCCCCeEeccCCCCCChhhhHhhh--CCCCCcEEEcCCCCCCChhH
Q 011708 48 WMDVIASQGSSLLSVDLSGSDVTDSGL-IHL-KDCSNLQSLDFNFCIQISDGGLEHLR--GLSNLTSLSFRRNNAITAQG 123 (479)
Q Consensus 48 ~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~ 123 (479)
.+.....+.+.+.+++|++|++..... ..+ ...|+|..|+|+++..... ...++. +...|++|-+.+|+..+...
T Consensus 209 ~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 209 VLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred HHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCccccchh
Confidence 345666778999999999988755322 223 5679999999999622211 112232 34568899999986543322
Q ss_pred H-----HH-HhCCCCCcEEe
Q 011708 124 M-----KA-FAGLINLVKLD 137 (479)
Q Consensus 124 ~-----~~-~~~l~~L~~L~ 137 (479)
. .+ -.-+|+|..||
T Consensus 288 ~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhHHHHHHHHHhcchheeec
Confidence 1 11 12578887775
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=41.38 E-value=1.7e+02 Score=28.08 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=41.3
Q ss_pred CCCceeccCCCCCCHHHHH---HHHcCCCCceeecCCCccchhhh----hhhccCccccccccccccccHHHHHHhh
Q 011708 397 SLTLLNLSQNCNLTDKTLE---LISGLTGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLESCKVTANDIKRLQ 466 (479)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~~~~ 466 (479)
-+..+.++.| ......-. .+..-+.+.+|++++|.....+- ++++.-..++.+.++.|..+..++....
T Consensus 414 ~l~el~ls~~-~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~gl~p~~ 489 (553)
T KOG4242|consen 414 VLAELSLSPG-PLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPGLGPRN 489 (553)
T ss_pred cccCcccCCC-cccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccccchhh
Confidence 4666777776 33332222 23445678888888887655432 3444455788888888876665554443
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=35.80 E-value=22 Score=18.31 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=7.1
Q ss_pred CCCEEEccCCCCch
Q 011708 349 GLTHLDLFGARITD 362 (479)
Q Consensus 349 ~L~~L~l~~~~~~~ 362 (479)
+|+.|.+++|+++.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 45555555555443
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=31.85 E-value=1.6 Score=36.67 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=53.8
Q ss_pred HHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCC
Q 011708 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397 (479)
Q Consensus 318 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 397 (479)
..+..+...+.|+++.+.+-..+. .++.++.+..|+++.+.+... +..+.....+..+.+.+|..... |..+.+.|.
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhC-CccccccCC
Confidence 345556677777777665433221 123345667777776654432 33334444555556655544433 556667778
Q ss_pred CCceeccCCCCCCHHHHHHHHcC
Q 011708 398 LTLLNLSQNCNLTDKTLELISGL 420 (479)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~l~~l 420 (479)
++.++..+++ +...+....+.|
T Consensus 113 ~k~~e~k~~~-~~~~~~~~v~~c 134 (326)
T KOG0473|consen 113 PKKNEQKKTE-FFRKLFGFVWSC 134 (326)
T ss_pred cchhhhccCc-chHHHHhHhhhh
Confidence 8888887773 443333333333
No 91
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=30.52 E-value=69 Score=28.97 Aligned_cols=18 Identities=44% Similarity=0.482 Sum_probs=8.7
Q ss_pred CCCCceeecCCCccchhh
Q 011708 420 LTGLVSLNVSNSRITSAG 437 (479)
Q Consensus 420 l~~L~~L~l~~~~~~~~~ 437 (479)
+++|+.|++.+|-|+..+
T Consensus 254 n~sl~slnvesnFItg~g 271 (353)
T KOG3735|consen 254 NKSLTSLNVESNFITGLG 271 (353)
T ss_pred cchhhheeccccccccHH
Confidence 444555555555444444
No 92
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=25.31 E-value=39 Score=17.25 Aligned_cols=11 Identities=36% Similarity=0.582 Sum_probs=4.6
Q ss_pred ccccccccccc
Q 011708 447 LRSLTLESCKV 457 (479)
Q Consensus 447 L~~L~l~~~~l 457 (479)
|++|.+.+..+
T Consensus 2 LKtL~L~~v~f 12 (26)
T PF07723_consen 2 LKTLHLDSVVF 12 (26)
T ss_pred CeEEEeeEEEE
Confidence 34444444433
No 93
>PF14162 YozD: YozD-like protein
Probab=23.33 E-value=96 Score=18.93 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhccCCcH
Q 011708 4 RDISQQIFNELVYSRCLTE 22 (479)
Q Consensus 4 ~e~~~~~~~~l~~~~~~~~ 22 (479)
+|+++-++.+|++|+.+..
T Consensus 11 EEIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 11 EEIAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHHHccCCCc
Confidence 6889999999999988753
No 94
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=21.33 E-value=49 Score=19.61 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=10.0
Q ss_pred CCcHHHHHHHHHH
Q 011708 1 MLPRDISQQIFNE 13 (479)
Q Consensus 1 ~~~~e~~~~~~~~ 13 (479)
.+|+|+..+||..
T Consensus 3 ~LP~Eil~~If~~ 15 (47)
T PF12937_consen 3 SLPDEILLEIFSY 15 (47)
T ss_dssp CS-HHHHHHHHTT
T ss_pred HhHHHHHHHHHhc
Confidence 4799999999954
Done!