Query 011708
Match_columns 479
No_of_seqs 320 out of 2838
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 13:43:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 1.4E-41 4.7E-46 337.6 15.1 401 57-462 33-517 (606)
2 3t6q_A CD180 antigen; protein- 100.0 8.3E-42 2.8E-46 339.1 11.5 401 54-460 54-538 (606)
3 3rgz_A Protein brassinosteroid 100.0 9E-43 3.1E-47 353.3 4.2 398 54-458 197-717 (768)
4 3rgz_A Protein brassinosteroid 100.0 2.7E-42 9.1E-47 349.9 4.1 436 32-478 152-711 (768)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-39 5.2E-44 322.9 9.4 412 57-478 32-552 (606)
6 2z81_A CD282 antigen, TOLL-lik 100.0 8.9E-38 3.1E-42 306.6 20.7 396 57-458 26-510 (549)
7 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-39 1.2E-43 324.5 9.8 131 345-477 477-615 (680)
8 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-38 3.6E-43 321.0 11.7 417 58-478 26-543 (680)
9 2z63_A TOLL-like receptor 4, v 100.0 4.9E-40 1.7E-44 324.3 1.7 160 57-218 28-191 (570)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-39 5.1E-44 323.0 4.3 251 201-459 304-559 (606)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-39 4E-44 333.9 1.3 397 56-459 23-518 (844)
12 4eco_A Uncharacterized protein 100.0 2.1E-39 7.2E-44 321.2 0.1 392 57-459 81-601 (636)
13 2z63_A TOLL-like receptor 4, v 100.0 1.7E-38 5.9E-43 313.3 2.7 393 54-458 49-531 (570)
14 1z7x_W Ribonuclease inhibitor; 100.0 6.5E-34 2.2E-38 273.1 32.5 395 57-476 3-460 (461)
15 2z81_A CD282 antigen, TOLL-lik 100.0 9E-36 3.1E-40 292.3 19.9 389 32-435 27-511 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 4.7E-36 1.6E-40 292.1 14.7 387 57-459 21-482 (520)
17 4ecn_A Leucine-rich repeat pro 100.0 3.4E-37 1.2E-41 310.0 6.7 392 57-459 323-841 (876)
18 4eco_A Uncharacterized protein 100.0 6.1E-37 2.1E-41 303.6 5.5 382 81-478 81-594 (636)
19 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-37 8.1E-42 316.8 0.3 396 54-459 70-540 (844)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-35 5.1E-40 288.6 12.2 399 60-478 3-475 (520)
21 2p1m_B Transport inhibitor res 100.0 1.8E-32 6.1E-37 271.7 34.4 465 1-474 8-534 (594)
22 1z7x_W Ribonuclease inhibitor; 100.0 5.1E-33 1.7E-37 266.8 26.1 359 81-466 3-419 (461)
23 3v47_A TOLL-like receptor 5B a 100.0 7.5E-35 2.6E-39 279.0 11.9 362 57-435 30-409 (455)
24 4ecn_A Leucine-rich repeat pro 100.0 4E-35 1.4E-39 295.0 8.5 382 81-478 323-834 (876)
25 3v47_A TOLL-like receptor 5B a 100.0 1.7E-34 5.8E-39 276.5 12.6 351 106-459 30-409 (455)
26 1o6v_A Internalin A; bacterial 100.0 2.9E-32 9.9E-37 261.0 24.7 345 57-436 46-390 (466)
27 3ogk_B Coronatine-insensitive 100.0 1.6E-32 5.6E-37 271.8 23.3 420 50-475 66-542 (592)
28 1o6v_A Internalin A; bacterial 100.0 7.7E-32 2.6E-36 258.0 26.1 344 81-459 46-389 (466)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.9E-33 2.7E-37 271.4 17.9 388 57-459 52-511 (562)
30 3ogk_B Coronatine-insensitive 100.0 1.4E-30 4.8E-35 257.9 26.7 418 32-455 74-548 (592)
31 4fmz_A Internalin; leucine ric 100.0 1.1E-30 3.6E-35 240.8 23.4 307 102-458 40-346 (347)
32 4fmz_A Internalin; leucine ric 100.0 7.9E-30 2.7E-34 235.0 28.0 301 56-406 43-343 (347)
33 2id5_A Lingo-1, leucine rich r 100.0 1.9E-32 6.3E-37 263.7 9.9 302 131-434 32-333 (477)
34 2p1m_B Transport inhibitor res 100.0 3.8E-30 1.3E-34 255.0 25.7 418 32-456 67-542 (594)
35 4g8a_A TOLL-like receptor 4; l 100.0 5.8E-32 2E-36 270.5 12.6 397 57-458 52-580 (635)
36 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.6E-32 3.3E-36 263.7 9.9 369 54-435 73-511 (562)
37 2id5_A Lingo-1, leucine rich r 100.0 5.7E-31 2E-35 253.3 13.8 302 57-385 32-333 (477)
38 3o6n_A APL1; leucine-rich repe 100.0 1.9E-30 6.5E-35 242.8 14.0 317 104-465 43-359 (390)
39 3o6n_A APL1; leucine-rich repe 100.0 1.8E-29 6.1E-34 236.3 15.2 312 79-412 43-354 (390)
40 3oja_B Anopheles plasmodium-re 100.0 2.4E-29 8.3E-34 247.9 12.6 311 104-435 49-359 (597)
41 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-28 5.2E-33 233.0 16.4 223 56-309 41-263 (457)
42 3oja_B Anopheles plasmodium-re 100.0 1.2E-28 4E-33 243.0 14.2 314 79-414 49-362 (597)
43 4g8a_A TOLL-like receptor 4; l 100.0 9.2E-30 3.1E-34 254.6 5.4 390 81-478 52-574 (635)
44 3bz5_A Internalin-J, INLJ; leu 100.0 9.2E-28 3.2E-32 227.7 18.3 337 74-458 35-387 (457)
45 1xku_A Decorin; proteoglycan, 99.9 6.5E-28 2.2E-32 220.3 9.6 269 180-456 52-330 (330)
46 1jl5_A Outer protein YOPM; leu 99.9 4.9E-27 1.7E-31 222.5 8.7 351 54-459 31-410 (454)
47 2ft3_A Biglycan; proteoglycan, 99.9 2.2E-27 7.5E-32 216.9 4.3 290 132-456 34-331 (332)
48 1xku_A Decorin; proteoglycan, 99.9 4E-27 1.4E-31 215.1 6.0 287 181-478 32-326 (330)
49 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-26 4E-31 212.0 5.9 287 107-406 34-330 (332)
50 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-27 4.1E-32 216.1 -1.3 249 180-456 50-302 (313)
51 1ogq_A PGIP-2, polygalacturona 99.9 2E-26 7E-31 208.0 3.9 249 57-310 50-301 (313)
52 2z80_A TOLL-like receptor 2, v 99.9 6.9E-26 2.4E-30 208.8 6.8 254 180-434 52-314 (353)
53 2z80_A TOLL-like receptor 2, v 99.9 7.9E-24 2.7E-28 195.0 16.1 252 57-311 52-312 (353)
54 1jl5_A Outer protein YOPM; leu 99.9 1.5E-23 5.1E-28 198.6 17.7 344 57-460 71-431 (454)
55 2ca6_A RAN GTPase-activating p 99.9 1.1E-22 3.6E-27 189.9 19.0 257 198-455 26-340 (386)
56 2ca6_A RAN GTPase-activating p 99.9 3E-22 1E-26 186.8 21.1 258 173-431 25-340 (386)
57 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-24 8.5E-29 192.2 6.3 203 180-406 32-235 (285)
58 3o53_A Protein LRIM1, AGAP0063 99.9 5.2E-25 1.8E-29 199.4 1.7 237 178-429 32-270 (317)
59 3zyi_A Leucine-rich repeat-con 99.9 2.9E-24 1E-28 204.6 5.9 228 204-434 75-303 (452)
60 3zyj_A Leucine-rich repeat-con 99.9 2.9E-24 9.9E-29 204.0 5.2 228 204-434 64-292 (440)
61 2ast_B S-phase kinase-associat 99.9 5.3E-22 1.8E-26 181.8 19.8 221 182-406 49-282 (336)
62 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-24 9.1E-29 192.0 4.1 207 228-435 32-239 (285)
63 2z66_A Variable lymphocyte rec 99.9 1.2E-24 4.2E-29 196.4 1.2 248 183-435 10-262 (306)
64 3zyi_A Leucine-rich repeat-con 99.9 5.4E-23 1.8E-27 195.9 12.5 226 57-286 75-300 (452)
65 3zyj_A Leucine-rich repeat-con 99.9 5.8E-23 2E-27 195.0 12.5 226 57-286 64-289 (440)
66 2ast_B S-phase kinase-associat 99.9 7.1E-22 2.4E-26 181.0 19.1 250 204-460 47-308 (336)
67 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-24 7.1E-29 195.5 1.3 261 181-456 11-273 (317)
68 2z66_A Variable lymphocyte rec 99.9 8.3E-23 2.9E-27 184.4 9.9 245 60-310 10-258 (306)
69 3goz_A Leucine-rich repeat-con 99.9 4.6E-22 1.6E-26 183.6 13.7 255 184-438 2-301 (362)
70 4fcg_A Uncharacterized protein 99.9 2.8E-22 9.6E-27 181.9 9.0 222 55-284 79-309 (328)
71 4fcg_A Uncharacterized protein 99.9 1.7E-23 5.7E-28 190.0 0.8 132 323-457 182-313 (328)
72 3goz_A Leucine-rich repeat-con 99.9 3.1E-21 1.1E-25 178.1 15.6 251 209-460 3-299 (362)
73 1wwl_A Monocyte differentiatio 99.9 2.1E-24 7.1E-29 195.0 -6.4 249 176-459 39-310 (312)
74 1wwl_A Monocyte differentiatio 99.9 4E-24 1.4E-28 193.1 -5.4 245 151-406 39-306 (312)
75 3oja_A Leucine-rich immune mol 99.9 8.9E-23 3E-27 195.3 2.4 236 179-429 33-270 (487)
76 3oja_A Leucine-rich immune mol 99.8 6.1E-23 2.1E-27 196.4 0.7 237 202-453 32-270 (487)
77 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-20 3.7E-25 184.4 15.3 269 131-445 40-308 (622)
78 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-20 4.3E-25 183.9 15.3 269 106-421 40-308 (622)
79 2z62_A TOLL-like receptor 4, v 99.8 1.2E-21 4.1E-26 173.9 2.8 205 228-434 28-237 (276)
80 2o6q_A Variable lymphocyte rec 99.8 2.4E-21 8.4E-26 171.1 3.8 202 229-434 17-218 (270)
81 2o6q_A Variable lymphocyte rec 99.8 7.4E-21 2.5E-25 168.0 4.0 200 205-407 17-216 (270)
82 2z62_A TOLL-like receptor 4, v 99.8 8.3E-20 2.9E-24 162.0 10.6 203 57-262 28-234 (276)
83 1h6u_A Internalin H; cell adhe 99.8 1.3E-19 4.5E-24 162.9 11.6 195 226-437 39-233 (308)
84 3rfs_A Internalin B, repeat mo 99.8 2.3E-20 7.8E-25 165.0 5.7 207 228-446 41-247 (272)
85 3rfs_A Internalin B, repeat mo 99.8 1.7E-20 5.7E-25 165.8 3.8 200 248-459 37-236 (272)
86 4glp_A Monocyte differentiatio 99.8 1.6E-20 5.6E-25 169.4 3.6 228 204-458 64-307 (310)
87 1h6u_A Internalin H; cell adhe 99.8 4.3E-19 1.5E-23 159.6 11.9 190 201-406 38-227 (308)
88 4glp_A Monocyte differentiatio 99.8 9.3E-20 3.2E-24 164.4 6.7 223 179-406 63-304 (310)
89 1p9a_G Platelet glycoprotein I 99.8 1.1E-19 3.7E-24 161.8 2.8 203 224-434 6-208 (290)
90 1p9a_G Platelet glycoprotein I 99.8 1.3E-19 4.6E-24 161.1 3.2 201 200-407 6-206 (290)
91 2xwt_C Thyrotropin receptor; s 99.8 3.5E-20 1.2E-24 160.6 -1.9 197 229-455 32-236 (239)
92 2xwt_C Thyrotropin receptor; s 99.7 8.3E-19 2.8E-23 151.9 6.7 182 57-241 31-218 (239)
93 3m19_A Variable lymphocyte rec 99.7 5.6E-19 1.9E-23 154.1 3.1 179 253-435 15-193 (251)
94 3m19_A Variable lymphocyte rec 99.7 2E-18 6.7E-23 150.6 2.5 179 228-410 14-192 (251)
95 1h6t_A Internalin B; cell adhe 99.7 4.9E-17 1.7E-21 144.7 8.7 172 226-436 44-215 (291)
96 1h6t_A Internalin B; cell adhe 99.7 4.8E-17 1.6E-21 144.8 8.3 172 275-461 45-216 (291)
97 4ezg_A Putative uncharacterize 99.7 8.5E-17 2.9E-21 134.6 7.5 153 299-459 43-195 (197)
98 1m9s_A Internalin B; cell inva 99.6 2.5E-16 8.7E-21 153.5 9.3 176 226-440 41-216 (605)
99 3sb4_A Hypothetical leucine ri 99.6 1.5E-17 5.2E-22 151.2 0.2 287 154-451 24-327 (329)
100 1m9s_A Internalin B; cell inva 99.6 1.4E-16 4.6E-21 155.4 5.3 174 274-462 41-214 (605)
101 4ezg_A Putative uncharacterize 99.6 1.2E-15 4.1E-20 127.5 9.2 102 229-334 45-146 (197)
102 2o6s_A Variable lymphocyte rec 99.6 1.1E-16 3.8E-21 135.3 1.3 163 276-446 28-190 (208)
103 3sb4_A Hypothetical leucine ri 99.6 6.3E-16 2.1E-20 140.5 6.2 102 251-354 225-327 (329)
104 2o6s_A Variable lymphocyte rec 99.6 1.3E-16 4.5E-21 134.8 1.3 158 253-418 29-186 (208)
105 4ay9_X Follicle-stimulating ho 99.6 3.3E-16 1.1E-20 143.6 2.4 186 57-243 30-217 (350)
106 2xot_A Amphoterin-induced prot 99.6 4.4E-16 1.5E-20 143.3 3.1 176 255-434 21-202 (361)
107 3un9_A NLR family member X1; l 99.6 3.5E-14 1.2E-18 130.2 15.6 135 252-386 72-225 (372)
108 3un9_A NLR family member X1; l 99.6 2.2E-14 7.6E-19 131.6 13.7 185 275-460 71-285 (372)
109 2v9t_B SLIT homolog 2 protein 99.6 3.8E-16 1.3E-20 132.8 1.7 152 279-434 14-165 (220)
110 1xeu_A Internalin C; cellular 99.6 6.6E-16 2.3E-20 135.1 2.5 170 253-438 20-189 (263)
111 4fs7_A Uncharacterized protein 99.6 4E-16 1.4E-20 145.5 0.8 335 69-450 59-393 (394)
112 2v70_A SLIT-2, SLIT homolog 2 99.5 1E-15 3.6E-20 130.1 2.9 152 279-434 14-166 (220)
113 2xot_A Amphoterin-induced prot 99.5 1.8E-15 6.1E-20 139.3 3.9 175 230-407 20-200 (361)
114 4fs7_A Uncharacterized protein 99.5 1.2E-15 4.2E-20 142.2 2.7 335 94-476 59-393 (394)
115 4ay9_X Follicle-stimulating ho 99.5 6.5E-17 2.2E-21 148.3 -6.3 240 207-455 12-256 (350)
116 1xeu_A Internalin C; cellular 99.5 1.3E-15 4.5E-20 133.3 1.4 163 229-406 20-182 (263)
117 3cvr_A Invasion plasmid antige 99.5 5E-15 1.7E-19 142.7 5.3 188 228-444 59-253 (571)
118 3e6j_A Variable lymphocyte rec 99.5 4.2E-15 1.4E-19 127.3 4.0 133 300-434 40-172 (229)
119 3cvr_A Invasion plasmid antige 99.5 4.9E-15 1.7E-19 142.8 4.1 189 204-421 59-254 (571)
120 2v70_A SLIT-2, SLIT homolog 2 99.5 4E-15 1.4E-19 126.5 2.6 149 255-406 14-163 (220)
121 2v9t_B SLIT homolog 2 protein 99.5 5.3E-14 1.8E-18 119.5 8.1 87 177-263 53-139 (220)
122 4fdw_A Leucine rich hypothetic 99.5 4.6E-15 1.6E-19 137.5 1.5 268 154-460 112-385 (401)
123 2je0_A Acidic leucine-rich nuc 99.5 2.5E-14 8.4E-19 113.7 5.4 127 324-453 17-148 (149)
124 1dce_A Protein (RAB geranylger 99.5 5E-16 1.7E-20 150.5 -5.9 122 349-477 442-566 (567)
125 4fdw_A Leucine rich hypothetic 99.5 5E-14 1.7E-18 130.5 7.7 264 80-359 112-381 (401)
126 3e6j_A Variable lymphocyte rec 99.5 1.2E-14 4.1E-19 124.4 2.8 150 254-407 21-170 (229)
127 2ell_A Acidic leucine-rich nuc 99.5 1.9E-14 6.6E-19 116.9 2.9 132 324-458 24-160 (168)
128 1dce_A Protein (RAB geranylger 99.4 7.1E-16 2.4E-20 149.5 -7.2 197 249-452 346-567 (567)
129 2je0_A Acidic leucine-rich nuc 99.4 1.2E-13 4.1E-18 109.7 6.7 127 276-404 17-148 (149)
130 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-13 4.7E-18 112.7 4.5 135 322-461 17-156 (176)
131 2ell_A Acidic leucine-rich nuc 99.4 1E-12 3.4E-17 106.7 7.1 130 130-262 23-157 (168)
132 4gt6_A Cell surface protein; l 99.3 4.7E-13 1.6E-17 124.7 4.3 130 319-456 260-389 (394)
133 1ds9_A Outer arm dynein; leuci 99.3 2.5E-14 8.6E-19 119.6 -4.2 133 319-459 43-186 (198)
134 4gt6_A Cell surface protein; l 99.3 1E-12 3.5E-17 122.5 6.0 330 74-431 56-388 (394)
135 1w8a_A SLIT protein; signaling 99.3 2E-13 6.9E-18 113.3 0.8 129 303-435 11-140 (192)
136 2o6r_A Variable lymphocyte rec 99.3 1E-12 3.5E-17 107.7 4.1 130 302-435 9-138 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.3 1.6E-12 5.6E-17 106.2 4.9 108 274-385 17-126 (176)
138 2wfh_A SLIT homolog 2 protein 99.3 6.4E-13 2.2E-17 110.2 2.4 127 303-434 13-139 (193)
139 1ds9_A Outer arm dynein; leuci 99.3 1.3E-13 4.6E-18 115.1 -3.4 129 343-477 43-180 (198)
140 2o6r_A Variable lymphocyte rec 99.2 4.3E-12 1.5E-16 103.9 3.5 126 278-406 9-134 (177)
141 2wfh_A SLIT homolog 2 protein 99.2 2.9E-12 9.8E-17 106.2 2.2 124 279-406 13-136 (193)
142 4b8c_D Glucose-repressible alc 99.2 8.7E-13 3E-17 132.0 -2.0 111 223-337 219-329 (727)
143 4b8c_D Glucose-repressible alc 99.2 1.8E-12 6.3E-17 129.7 0.3 115 247-365 219-333 (727)
144 1w8a_A SLIT protein; signaling 99.2 2.4E-11 8E-16 100.7 6.9 86 177-262 51-136 (192)
145 3e4g_A ATP synthase subunit S, 99.1 7.1E-11 2.4E-15 93.8 7.3 89 58-146 62-154 (176)
146 3e4g_A ATP synthase subunit S, 99.1 3.9E-11 1.3E-15 95.3 5.4 101 373-474 62-170 (176)
147 4h09_A Hypothetical leucine ri 99.1 1E-10 3.6E-15 108.4 6.8 311 57-396 46-356 (379)
148 4h09_A Hypothetical leucine ri 99.1 4.5E-11 1.5E-15 110.8 4.2 315 77-445 42-356 (379)
149 3g39_A Variable lymphocyte rec 99.1 3.9E-11 1.3E-15 97.1 2.1 106 326-435 11-116 (170)
150 2ra8_A Uncharacterized protein 99.0 1.7E-09 5.7E-14 98.3 12.6 70 371-441 251-327 (362)
151 2r9u_A Variable lymphocyte rec 99.0 7.2E-11 2.5E-15 95.9 2.1 105 327-435 15-119 (174)
152 2ra8_A Uncharacterized protein 99.0 4E-09 1.4E-13 95.8 13.3 83 347-432 251-341 (362)
153 1io0_A Tropomodulin; LRR prote 99.0 8.3E-09 2.8E-13 84.5 12.5 70 318-387 30-108 (185)
154 3g39_A Variable lymphocyte rec 98.9 1.6E-10 5.5E-15 93.5 1.2 102 302-406 11-112 (170)
155 1io0_A Tropomodulin; LRR prote 98.9 1.6E-08 5.4E-13 82.9 12.4 115 345-460 33-166 (185)
156 2r9u_A Variable lymphocyte rec 98.9 2.7E-10 9.2E-15 92.5 1.2 101 303-406 15-115 (174)
157 2ifg_A High affinity nerve gro 98.7 5.2E-09 1.8E-13 95.6 3.5 103 328-434 12-116 (347)
158 2ifg_A High affinity nerve gro 98.6 1.8E-08 6.3E-13 92.0 2.7 103 304-410 12-116 (347)
159 3rw6_A Nuclear RNA export fact 98.1 1.6E-06 5.5E-11 74.4 4.0 37 370-406 168-206 (267)
160 1pgv_A TMD-1, tropomodulin TMD 98.1 0.00012 4.2E-09 59.2 13.8 111 322-432 39-168 (197)
161 1pgv_A TMD-1, tropomodulin TMD 98.0 0.00011 3.7E-09 59.5 13.0 83 324-406 70-167 (197)
162 3rw6_A Nuclear RNA export fact 97.8 8.6E-05 3E-09 63.7 9.3 87 50-138 163-258 (267)
163 3rfe_A Platelet glycoprotein I 93.3 0.048 1.6E-06 40.9 2.7 55 376-434 12-68 (130)
164 3rfe_A Platelet glycoprotein I 90.8 0.15 5.2E-06 38.1 3.0 33 374-406 33-65 (130)
165 2lz0_A Uncharacterized protein 85.2 0.51 1.7E-05 33.2 2.5 47 68-116 7-53 (100)
166 2lz0_A Uncharacterized protein 70.7 1 3.5E-05 31.6 0.4 45 94-140 8-52 (100)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-41 Score=337.56 Aligned_cols=401 Identities=22% Similarity=0.226 Sum_probs=208.0
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|+++++.++...+..|.++++|++|++++| .+....+..|.++++|++|++++|. +....+..++++++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChhhhcccccccEe
Confidence 45777777777777666666777777777777774 4555556667777777777777764 344455666777777777
Q ss_pred ecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCC--EEEecCC
Q 011708 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT--LLNLEGC 214 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~l~~~ 214 (479)
++++|......+..+.++++|++|+++++. +.......+..+++|++|++++|.+....+..++.+++|+ .|++++|
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 777754443334556677777777777643 3322223333466777777776666655555566666665 5555554
Q ss_pred CCCHH---------------------------------------------------------------------------
Q 011708 215 PVTAA--------------------------------------------------------------------------- 219 (479)
Q Consensus 215 ~~~~~--------------------------------------------------------------------------- 219 (479)
.+...
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 33221
Q ss_pred HHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCCh-HHHHHhhC
Q 011708 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTG 298 (479)
Q Consensus 220 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~ 298 (479)
.+..+..+++|++|++++|.+... +..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.. .....+..
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSCC-CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred CHHHhccccCCCEEeccCCccCCC-ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 111233444555555555544422 2234445555555555555544433344444555555555543331 11122344
Q ss_pred CCCCCeeeccCCCCCHHH--HHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhH-HHHhcCCCCc
Q 011708 299 LTNLESINLSFTGISDGS--LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLR 375 (479)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~ 375 (479)
+++|+.|++++|.+.... +..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 455555555555444322 2334445555555555554444333344444555555555554443222 1234445555
Q ss_pred eeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHH---HHHHHcCCCCceeecCCCccchhhhhhhccCcccccccc
Q 011708 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT---LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452 (479)
Q Consensus 376 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 452 (479)
+|++++|.+....+..+..+++|++|++++| .+.... +..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 5555555544444444444455555555555 332211 122344455555555555554444444445555555555
Q ss_pred ccccccHHHH
Q 011708 453 ESCKVTANDI 462 (479)
Q Consensus 453 ~~~~l~~~~~ 462 (479)
++|+++....
T Consensus 508 s~N~l~~~~~ 517 (606)
T 3t6q_A 508 SHNRLTSSSI 517 (606)
T ss_dssp CSSCCCGGGG
T ss_pred CCCccCcCCh
Confidence 5555444433
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.3e-42 Score=339.14 Aligned_cols=401 Identities=20% Similarity=0.180 Sum_probs=245.7
Q ss_pred hCCCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCC
Q 011708 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (479)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 133 (479)
..+++|++|+++++.++...+..|.++++|++|++++| .+....+..++.+++|++|++++|. +....+..+.++++|
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTL 131 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTC
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeeccccC-cccCCcchhccCCcc
Confidence 34567777777777776666666777777777777764 4555555566677777777777664 344334456666777
Q ss_pred cEEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCc--EEEccC----------------------
Q 011708 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK--SLQISC---------------------- 189 (479)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~---------------------- 189 (479)
++|++++|.......+.+..+++|++|+++++. +....+..+..+++|+ .|++++
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 210 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECT
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccC
Confidence 777776654333233334446666666666532 3333333344444444 333333
Q ss_pred -----------------------------------------------------CccchHhHHHhhcCCCCCEEEecCCCC
Q 011708 190 -----------------------------------------------------SKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (479)
Q Consensus 190 -----------------------------------------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~ 216 (479)
+.+.......+..+++|++|++++|.+
T Consensus 211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 290 (606)
T 3t6q_A 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290 (606)
T ss_dssp TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence 333333333356677788888888776
Q ss_pred CHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHH-HHHhcCCCCccEEeccCCCCChHH--H
Q 011708 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDSCGIGDEG--L 293 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~--~ 293 (479)
.. .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.... ...+..+++|++|++++|.+.... +
T Consensus 291 ~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 291 SE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp SC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred CC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence 63 3445667778888888888777766667777777888888777655322 223566777777777777665543 4
Q ss_pred HHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHH-HHHhcCCCCCEEEccCCCCchhhHHHHhcCC
Q 011708 294 VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFK 372 (479)
Q Consensus 294 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 372 (479)
..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+....+..+..++
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 449 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC
Confidence 456667777777777776655555556666777777777666544322 2245566677777776666655555566666
Q ss_pred CCceeeccCCccChHH---HHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccc
Q 011708 373 NLRSLEICGGGLTDAG---VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449 (479)
Q Consensus 373 ~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 449 (479)
+|++|++++|.+.+.. ...+..+++|++|++++| .++...+..+.++++|++|++++|.+....+..+..+++| .
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~ 527 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y 527 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-E
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-E
Confidence 6667766666665421 134555666666666666 5555555556666666666666666666666666666666 6
Q ss_pred cccccccccHH
Q 011708 450 LTLESCKVTAN 460 (479)
Q Consensus 450 L~l~~~~l~~~ 460 (479)
|++++|+++..
T Consensus 528 L~L~~N~l~~~ 538 (606)
T 3t6q_A 528 LNLASNHISII 538 (606)
T ss_dssp EECCSSCCCCC
T ss_pred EECcCCccccc
Confidence 66666666543
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9e-43 Score=353.30 Aligned_cols=398 Identities=22% Similarity=0.195 Sum_probs=190.2
Q ss_pred hCCCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCC
Q 011708 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (479)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 133 (479)
..+++|++|+++++.+++..+. +..+++|++|++++| .+....+..+..+++|++|++++|.. ....+.. .+++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~--~l~~L 271 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQF-VGPIPPL--PLKSL 271 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSCC-EESCCCC--CCTTC
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCCcc-cCccCcc--ccCCC
Confidence 3456677777777666654333 666677777777664 45545555666666666666666632 2221211 44555
Q ss_pred cEEecccccccccccccccC-CcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhH-HHhhcCCCCCEEEe
Q 011708 134 VKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNL 211 (479)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l 211 (479)
++|++++|......+..+.. +++|++|++++|. +.+..+..+.++++|++|++++|.+....+ ..+..+++|++|++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 55555554332233333322 2444444444422 222233334444444444444444332111 12334444444444
Q ss_pred cCCC---------------------------------------------------CCHHHHHHHhCCCCCCEEEccCCCC
Q 011708 212 EGCP---------------------------------------------------VTAACLDSLSALGSLFYLNLNRCQL 240 (479)
Q Consensus 212 ~~~~---------------------------------------------------~~~~~~~~l~~~~~L~~L~l~~~~~ 240 (479)
++|. +....+..+..+++|++|++++|.+
T Consensus 351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 4332 2222223333344444444444443
Q ss_pred ChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHh
Q 011708 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320 (479)
Q Consensus 241 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 320 (479)
....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 33333344444444444444444443333344444445555554444443334444445555555555554444344444
Q ss_pred hCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHH---------------------------------
Q 011708 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY--------------------------------- 367 (479)
Q Consensus 321 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--------------------------------- 367 (479)
..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 44555555555555444333344445555555555555433211111
Q ss_pred -------------------------------------HhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCC
Q 011708 368 -------------------------------------LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410 (479)
Q Consensus 368 -------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 410 (479)
+..+++|+.|++++|.+++..+..+..++.|+.|++++| .++
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~ 669 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DIS 669 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCC
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccC
Confidence 111244555555555555555555555556666666655 455
Q ss_pred HHHHHHHHcCCCCceeecCCCccchhhhhhhccCcccccccccccccc
Q 011708 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 411 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 458 (479)
...+..++++++|+.|++++|.+....+..+..+++|++|++++|+++
T Consensus 670 g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 555555555666666666666555555555555566666666666543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-42 Score=349.87 Aligned_cols=436 Identities=21% Similarity=0.212 Sum_probs=274.6
Q ss_pred cceeeeccCCCCCChH-HHHHHHhCCCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcE
Q 011708 32 ALQDLCLGQYPGVNDK-WMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110 (479)
Q Consensus 32 ~l~~l~l~~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 110 (479)
.++.+.++.+.-.... ........+++|++|+++++.+++.. .+..+++|++|++++|. +....+. ++.+++|++
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~ 227 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQH 227 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC--BCTTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCE
T ss_pred CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC--CcccCCcCCEEECcCCc-CCCCCcc-cccCCCCCE
Confidence 7888888776432211 11223567899999999999887543 34789999999999964 5443333 889999999
Q ss_pred EEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcCccEEeccCCCCCCccccccccC-CCCCcEEEccC
Q 011708 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISC 189 (479)
Q Consensus 111 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~ 189 (479)
|++++|. +....+..+.++++|++|++++|......+. . .+++|++|++++|. +.+..+..+.. +++|++|++++
T Consensus 228 L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~-~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 228 LDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPP-L-PLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSG 303 (768)
T ss_dssp EECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCC-C-CCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCS
T ss_pred EECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccCc-c-ccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcC
Confidence 9999995 5667789999999999999999754433332 2 88999999999865 44344555554 59999999999
Q ss_pred CccchHhHHHhhcCCCCCEEEecCCCCCHHHH-HHHhCCCCCCEEEccCCCCChhhHHHHhcC-----------------
Q 011708 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKI----------------- 251 (479)
Q Consensus 190 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----------------- 251 (479)
|.+....+..++.+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+
T Consensus 304 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence 99987778889999999999999998763333 347888889999888887654333333332
Q ss_pred ----------CCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhh
Q 011708 252 ----------GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA 321 (479)
Q Consensus 252 ----------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 321 (479)
++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+.
T Consensus 384 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 463 (768)
T 3rgz_A 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463 (768)
T ss_dssp CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 3344444444444333344455555666666665555444444455555555555555554443344444
Q ss_pred CCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCC----
Q 011708 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS---- 397 (479)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---- 397 (479)
.+++|++|++++|.+....+..+..+++|+.|++++|++....+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 4555555555555444333334444455555555555444433444444444444444444444333333333444
Q ss_pred --------------------------------------------------------------------------------
Q 011708 398 -------------------------------------------------------------------------------- 397 (479)
Q Consensus 398 -------------------------------------------------------------------------------- 397 (479)
T Consensus 544 ~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~ 623 (768)
T 3rgz_A 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623 (768)
T ss_dssp ECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred ECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence
Q ss_pred ----------CCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccHHHHHHhhh
Q 011708 398 ----------LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467 (479)
Q Consensus 398 ----------L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 467 (479)
|+.|++++| .++...+..++++++|+.|++++|.+....+..+..+++|+.|++++|+++......+.
T Consensus 624 ~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~- 701 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS- 701 (768)
T ss_dssp CCCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG-
T ss_pred CchhhhccccccEEECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh-
Confidence 445555555 44444555566666666666666666666666666666666777766666544333333
Q ss_pred CCCCccccCCC
Q 011708 468 RDLPNLVSFRP 478 (479)
Q Consensus 468 ~~~p~L~~l~~ 478 (479)
.++.|+.|++
T Consensus 702 -~l~~L~~L~l 711 (768)
T 3rgz_A 702 -ALTMLTEIDL 711 (768)
T ss_dssp -GCCCCSEEEC
T ss_pred -CCCCCCEEEC
Confidence 5555555543
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-39 Score=322.91 Aligned_cols=412 Identities=22% Similarity=0.231 Sum_probs=258.7
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|+++++.+++.....|.++++|++|++++| .++...+..|.++++|++|++++|. +....|..|.++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEE
Confidence 57888888888887776667888888888888884 5666666777888888888888874 455556778888888888
Q ss_pred ecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCC------------
Q 011708 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ------------ 204 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~------------ 204 (479)
++++|......+..++++++|++|+++++.......+..+.++++|++|++++|.++...+..++.++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 88886544444456778888888888875433323466777888888888887776654333222222
Q ss_pred ---------------CCCEEEecCCCCC-HHHHHHHhCC-----------------------------------------
Q 011708 205 ---------------KLTLLNLEGCPVT-AACLDSLSAL----------------------------------------- 227 (479)
Q Consensus 205 ---------------~L~~L~l~~~~~~-~~~~~~l~~~----------------------------------------- 227 (479)
+|+.|++++|.+. ...+..+..+
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 4555555555443 1222223333
Q ss_pred ---------------CCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHH--------------------Hh
Q 011708 228 ---------------GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV--------------------HL 272 (479)
Q Consensus 228 ---------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------------~l 272 (479)
++|+.|+++++.+.... .+..+++|+.|++++|.+. ..+. .+
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~ 346 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKK 346 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCC
T ss_pred ccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhh
Confidence 34444444444443322 3444556666666665542 1111 11
Q ss_pred cCCCCccEEeccCCCCChHH--HHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHH-HHHhcCCC
Q 011708 273 KGLTNLESLNLDSCGIGDEG--LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTG 349 (479)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~ 349 (479)
..+++|++|++++|.+.... +..+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+....+ ..+..+++
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 23344444444444443321 334455555666666555444322 334556666666666665554433 34556777
Q ss_pred CCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChH-HHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeec
Q 011708 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428 (479)
Q Consensus 350 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 428 (479)
|+.|++++|.+....+..+..+++|++|++++|.+.+. .+..+..+++|++|++++| .++...+..+.++++|++|++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEEC
Confidence 77777777777666566667777788888877777663 4555667788888888888 677666667777888888888
Q ss_pred CCCccchhhhhhhccCccccccccccccccHHHHHHhhhCCCC-ccccCCC
Q 011708 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP-NLVSFRP 478 (479)
Q Consensus 429 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~p-~L~~l~~ 478 (479)
++|.+....+..+..+++|++|++++|+++..... + ..+| +|+.+++
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~--~~l~~~L~~l~l 552 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-L--QHFPKSLAFFNL 552 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-G--GGSCTTCCEEEC
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-H--hhhcccCcEEEc
Confidence 88888777777777888888888888877643222 2 2444 4666554
No 6
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.9e-38 Score=306.58 Aligned_cols=396 Identities=21% Similarity=0.200 Sum_probs=252.0
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|+++++.+++..+..|.++++|++|+++++ .+....+..+..+++|++|++++|. +....+..++++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEE
Confidence 68999999999998877778899999999999985 6777777788899999999999985 566667778999999999
Q ss_pred ecccccccc-cccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCC
Q 011708 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (479)
Q Consensus 137 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (479)
++++|.... ..+..+.++++|++|+++++..........+.++++|++|+++++.+....+..+..+++|++|+++++.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999875443 3345688899999999998765655555678888999999999888887667778888888888888887
Q ss_pred CCHHHHHHHhCCCCCCEEEccCCCCChhh---HHHHhcCCCCcEEecccccCChHHHHHh--------------------
Q 011708 216 VTAACLDSLSALGSLFYLNLNRCQLSDDG---CEKFSKIGSLKVLNLGFNEITDECLVHL-------------------- 272 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l-------------------- 272 (479)
........+..+++|++|++++|.+.... ......+++|+.|++.++.+.+..+..+
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 66554444567788888888887765421 0011123334444443333322211111
Q ss_pred -------------------------------------------cCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccC
Q 011708 273 -------------------------------------------KGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSF 309 (479)
Q Consensus 273 -------------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 309 (479)
...++|+.|++++|.+.......+..+++|+.|++++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC
Confidence 1112344444444444332222234566666666666
Q ss_pred CCCCHHHHHH---hhCCCCCceeecCCCCCCHHHH--HHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCcc
Q 011708 310 TGISDGSLRK---LAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384 (479)
Q Consensus 310 ~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 384 (479)
|.+.+..+.. +..+++|++|++++|.++.... ..+..+++|+.|++++|+++.. +..+..+++|++|++++|.+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSCC
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCCc
Confidence 6666544322 3455666666666666655432 3355666666666666665532 22334455555555555554
Q ss_pred ChHHHHH-----------------HHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccc
Q 011708 385 TDAGVKH-----------------IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447 (479)
Q Consensus 385 ~~~~~~~-----------------~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 447 (479)
+...... ...+++|++|++++| .++.. +. ...+++|+.|++++|.+....+..+..+++|
T Consensus 423 ~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~i-p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 499 (549)
T 2z81_A 423 RVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTL-PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499 (549)
T ss_dssp SCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSC-CC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTC
T ss_pred ccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcC-CC-cccCccCCEEecCCCccCCcCHHHHhcCccc
Confidence 4321100 124566666666666 44422 21 2456666666666666666555556666667
Q ss_pred ccccccccccc
Q 011708 448 RSLTLESCKVT 458 (479)
Q Consensus 448 ~~L~l~~~~l~ 458 (479)
+.|++++|++.
T Consensus 500 ~~L~l~~N~~~ 510 (549)
T 2z81_A 500 QKIWLHTNPWD 510 (549)
T ss_dssp CEEECCSSCBC
T ss_pred CEEEecCCCcc
Confidence 77777666654
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-39 Score=324.47 Aligned_cols=131 Identities=23% Similarity=0.314 Sum_probs=66.7
Q ss_pred hcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHH--------HHHccCCCCceeccCCCCCCHHHHHH
Q 011708 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK--------HIKDLSSLTLLNLSQNCNLTDKTLEL 416 (479)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~~ 416 (479)
..+++|+.|++++|.++..++..+..+++|++|++++|.++..... .+..+++|++|++++| .++......
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~ 555 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEV 555 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHH
Confidence 3444555555555555544444445555555555555555443211 1344555555555555 444333344
Q ss_pred HHcCCCCceeecCCCccchhhhhhhccCccccccccccccccHHHHHHhhhCCCCccccCC
Q 011708 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477 (479)
Q Consensus 417 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~p~L~~l~ 477 (479)
+.++++|+.|++++|.+...++..+..+++|+.|++++|.++......+. ..+++|+.++
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~~L~~l~ 615 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG-PAFRNLTELD 615 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH-HHHTTCSEEE
T ss_pred cccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc-ccccccCEEE
Confidence 55566666666666666655555555666666666666655544333322 1334444443
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-38 Score=320.99 Aligned_cols=417 Identities=22% Similarity=0.209 Sum_probs=205.1
Q ss_pred CccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEe
Q 011708 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (479)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 137 (479)
++++|+++++.++......|.++++|++|+++++ .+....+..++++++|++|++++|. +....+..|.++++|++|+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEE
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEE
Confidence 4555555555555444444555555555555552 3444444445555555555555542 2222223455555555555
Q ss_pred cccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhh--cCCCCCEEEecCCC
Q 011708 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK--GLQKLTLLNLEGCP 215 (479)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~ 215 (479)
+++|......+..+.++++|++|+++++. +....+..+.++++|++|++++|.++...+..+. .+++|++|++++|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 55543222222334555555555555432 2223333444455555555555544433333222 23444444444443
Q ss_pred CCHHH---------------------------------------------------HHHHhCC--CCCCEEEccCCCCCh
Q 011708 216 VTAAC---------------------------------------------------LDSLSAL--GSLFYLNLNRCQLSD 242 (479)
Q Consensus 216 ~~~~~---------------------------------------------------~~~l~~~--~~L~~L~l~~~~~~~ 242 (479)
+.... +..+..+ ++|++|++++|.+..
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 32221 1122222 124444444444444
Q ss_pred hhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChH---------HHHHhhCCCCCCeeeccCCCCC
Q 011708 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE---------GLVNLTGLTNLESINLSFTGIS 313 (479)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---------~~~~~~~~~~L~~L~l~~~~~~ 313 (479)
..+..+..+++|+.|++++|.+....+..+..+++|+.|+++++..... ....+..+++|+.|++++|.+.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 4334444445555555555544443334444455555555544321110 0113445666666666666665
Q ss_pred HHHHHHhhCCCCCceeecCCCC----------------------------CCHHHHHHHhcCCCCCEEEccCCCCchh-h
Q 011708 314 DGSLRKLAGLSSLKSLNLDARQ----------------------------ITDTGLAALTSLTGLTHLDLFGARITDS-G 364 (479)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~----------------------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~ 364 (479)
...+..+..+++|++|++++|. +....+..+..+++|+.|++++|.+... +
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 5444445556666666665543 1111122233344444444444444321 1
Q ss_pred HHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCC--HHHHHHHHcCCCCceeecCCCccchhhhhhhc
Q 011708 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT--DKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442 (479)
Q Consensus 365 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 442 (479)
...+..+++|++|++++|.+....+..+..+++|+.|++++| .+. ...+..+..+++|+.|++++|.+....+..+.
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS-CCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc-cccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 123344444444444444444443444444555555555555 222 23344567788888888888888877777788
Q ss_pred cCccccccccccccccHHHHHHhh------hCCCCccccCCC
Q 011708 443 PLKNLRSLTLESCKVTANDIKRLQ------SRDLPNLVSFRP 478 (479)
Q Consensus 443 ~~~~L~~L~l~~~~l~~~~~~~~~------~~~~p~L~~l~~ 478 (479)
.+++|++|++++|.++......++ -..+++|+.|++
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence 888888888888887654322211 135677776654
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-40 Score=324.34 Aligned_cols=160 Identities=26% Similarity=0.246 Sum_probs=114.5
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|+++++.++......|.++++|++|++++| .+.......+.++++|++|++++|. +....+..|.++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccc
Confidence 46888888888888777777888888888888885 5666666778888888888888884 455556678888888888
Q ss_pred ecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCC----CEEEec
Q 011708 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL----TLLNLE 212 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L----~~L~l~ 212 (479)
+++++.........++++++|++|+++++.......+..+.++++|++|+++++.++...+..++.+++| +.++++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 8888643333333577888888888887543322345677788888888888887766544555555555 566666
Q ss_pred CCCCCH
Q 011708 213 GCPVTA 218 (479)
Q Consensus 213 ~~~~~~ 218 (479)
++.+..
T Consensus 186 ~n~l~~ 191 (570)
T 2z63_A 186 LNPMNF 191 (570)
T ss_dssp TCCCCE
T ss_pred CCCcee
Confidence 665443
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-39 Score=322.96 Aligned_cols=251 Identities=23% Similarity=0.203 Sum_probs=198.2
Q ss_pred hcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHH--HHHhcCCCCc
Q 011708 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC--LVHLKGLTNL 278 (479)
Q Consensus 201 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L 278 (479)
..+++|++|++++|.+... + .+ .+++|++|++++|...... .+..+++|+.|++++|.+.... +..+..+++|
T Consensus 304 ~~~~~L~~L~l~~n~l~~l-p-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQLKQF-P-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp CTTCCCSEEEEESCCCSSC-C-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred cccccCCEEEcccccCccc-c-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence 3344555555555544222 2 23 5566666666666333222 4557788999999988876542 5667889999
Q ss_pred cEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHH-HHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccC
Q 011708 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357 (479)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 357 (479)
++|++++|.+.... ..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 379 ~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 379 RHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp CEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred cEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 99999999876533 567789999999999997766544 4677899999999999998876667788999999999999
Q ss_pred CCCchh-hHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchh
Q 011708 358 ARITDS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436 (479)
Q Consensus 358 ~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 436 (479)
|.+... .+..+..+++|++|++++|.+++..+..+..+++|++|++++| .++...+..+.++++|+.|++++|++...
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 536 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETS 536 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSCCCCE
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCcCccc
Confidence 998873 5666789999999999999999988888899999999999999 78888788899999999999999999865
Q ss_pred hhhhhccCc-cccccccccccccH
Q 011708 437 GLRHLKPLK-NLRSLTLESCKVTA 459 (479)
Q Consensus 437 ~~~~l~~~~-~L~~L~l~~~~l~~ 459 (479)
+ ..+..++ +|++|++++|++.-
T Consensus 537 p-~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 537 K-GILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp E-SCGGGSCTTCCEEECCSCCCCC
T ss_pred C-HhHhhhcccCcEEEccCCCccc
Confidence 4 4488887 59999999998753
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=333.90 Aligned_cols=397 Identities=22% Similarity=0.219 Sum_probs=240.3
Q ss_pred CCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcE
Q 011708 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
.+++++|+++++.++...+..|.++++|++|++++|.......+..+.++++|++|++++|. +....|..|.++++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCE
Confidence 46899999999999988788899999999999999766666667889999999999999985 56666888999999999
Q ss_pred Eeccccccccccccc--ccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcC--CCCCEEEe
Q 011708 136 LDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL--QKLTLLNL 211 (479)
Q Consensus 136 L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l 211 (479)
|++++|......+.. +.++++|++|+++++..........+.++++|++|++++|.+....+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999997655434443 88999999999998654433333578899999999999988765444434333 44444444
Q ss_pred cCCCCCHHHHHHHhCC----------------------------------------------------------------
Q 011708 212 EGCPVTAACLDSLSAL---------------------------------------------------------------- 227 (479)
Q Consensus 212 ~~~~~~~~~~~~l~~~---------------------------------------------------------------- 227 (479)
++|.+....+..+..+
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 4443322211111111
Q ss_pred ----CCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCC
Q 011708 228 ----GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303 (479)
Q Consensus 228 ----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (479)
++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 3455555555555444444455555555555555555544444455555556666655555444444455555566
Q ss_pred eeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchh--------------------
Q 011708 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-------------------- 363 (479)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------------------- 363 (479)
.|++++|.+.......+..+++|++|++++|.++.. ..+++|+.|++++|++...
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccccccccccceeecccCccccC
Confidence 666655555443333444555566666655554421 1133333333333332211
Q ss_pred h-HHHHhcCCCCceeeccCCccChHHHH-HHHccCCCCceeccCCCCCCH-----HHHHHHHcCCCCceeecCCCccchh
Q 011708 364 G-AAYLRNFKNLRSLEICGGGLTDAGVK-HIKDLSSLTLLNLSQNCNLTD-----KTLELISGLTGLVSLNVSNSRITSA 436 (479)
Q Consensus 364 ~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~ 436 (479)
. ...+..+++|+.|++++|.+++.... .+..+++|+.|++++| .++. ..+..+.++++|+.|++++|.+...
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 495 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCCCccccc
Confidence 1 11223555666666666655532211 1223455666666655 3321 1122344556666666666666666
Q ss_pred hhhhhccCccccccccccccccH
Q 011708 437 GLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 437 ~~~~l~~~~~L~~L~l~~~~l~~ 459 (479)
.+..+..+++|+.|++++|.++.
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 496 PPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp CTTSSSSCCSCSEEEEESCCCSS
T ss_pred ChhHccchhhhheeECCCCCCCc
Confidence 55666666667777777766654
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.1e-39 Score=321.21 Aligned_cols=392 Identities=16% Similarity=0.158 Sum_probs=256.2
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCC-------------------------------------------
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ------------------------------------------- 93 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------------------------------------- 93 (479)
.+++.|+++++.+.+..+..+.++++|++|+++++..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 6899999999999988888999999999999988631
Q ss_pred ----------------------------------CChhhhHhhhCCCCCcEEEcCCCCCCChh-----------------
Q 011708 94 ----------------------------------ISDGGLEHLRGLSNLTSLSFRRNNAITAQ----------------- 122 (479)
Q Consensus 94 ----------------------------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----------------- 122 (479)
++. .+..++++++|++|++++|. +...
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCc-cccccccccccccccchhccc
Confidence 111 23446667777777777764 3442
Q ss_pred HHHHHh--CCCCCcEEecccccccccccccccCCcCccEEeccCCCCCCc-cccccccCC------CCCcEEEccCCccc
Q 011708 123 GMKAFA--GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGL------TNLKSLQISCSKVT 193 (479)
Q Consensus 123 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~------~~L~~L~l~~~~~~ 193 (479)
.|..++ ++++|++|++++|......+..+.++++|++|+++++..+.+ ..+..+.++ ++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 556666 777777777777655555566667777777777776543443 344444443 67777777777666
Q ss_pred hHhHH--HhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCC-CcEEecccccCChHHHH
Q 011708 194 DSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLV 270 (479)
Q Consensus 194 ~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~ 270 (479)
..+. .++.+++|++|++++|.+....+ .+..+++|++|++++|.+. ..+..+..+++ |+.|++++|.+. ..+.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 3333 56677777777777776663334 5666667777777777665 33344666666 777777777766 3333
Q ss_pred HhcCC--CCccEEeccCCCCChHHHHHhh-------CCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHH
Q 011708 271 HLKGL--TNLESLNLDSCGIGDEGLVNLT-------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341 (479)
Q Consensus 271 ~l~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 341 (479)
.+... ++|+.|++++|.+....+..+. .+++|+.|++++|.++......+..+++|++|++++|.++..+.
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 34333 3677777777776655555555 55677777777777765444445567777777777777764333
Q ss_pred HHHhcC-------CCCCEEEccCCCCchhhHHHHh--cCCCCceeeccCCccChHHHHHHHccCCCCceeccCCC-----
Q 011708 342 AALTSL-------TGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC----- 407 (479)
Q Consensus 342 ~~l~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----- 407 (479)
..+... ++|+.|++++|.++..+ ..+. .+++|+.|++++|.+++ .+..+..+++|++|++++|.
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLS-DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCCBCC-GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred HHhccccccccccCCccEEECcCCcCCccC-hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence 222222 27777788777777433 3343 67778888888777776 35566677778888774321
Q ss_pred CCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccH
Q 011708 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 408 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 459 (479)
.+....+..+..+++|++|++++|.+... +..+. ++|+.|++++|++..
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--TTCCEEECCSCTTCE
T ss_pred cccccChHHHhcCCCCCEEECCCCcCCcc-CHhHh--CcCCEEECcCCCCcc
Confidence 44555566677777888888888877443 33333 678888888886654
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=313.30 Aligned_cols=393 Identities=21% Similarity=0.220 Sum_probs=263.3
Q ss_pred hCCCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCC
Q 011708 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (479)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 133 (479)
..+++|++|++++++++...+..|.++++|++|+++++ .++...+..+..+++|++|++++|. +....+..++++++|
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTL 126 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTC
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccc-cccCCCccccccccc
Confidence 45778888888888888776677888888888888884 4666666778888888888888874 333333347788888
Q ss_pred cEEecccccccc-cccccccCCcCccEEeccCCCCCCccccccccCCCCC----cEEEccCCccchHhHHHh--------
Q 011708 134 VKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL----KSLQISCSKVTDSGIAYL-------- 200 (479)
Q Consensus 134 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~l-------- 200 (479)
++|++++|.... ..+..+.++++|++|+++++. +....+..+..+++| +.++++++.+....+..+
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L 205 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence 888888865443 245667888888888888743 343334444444444 556665554443322222
Q ss_pred -------------------------------------------------------------------------hcCCCCC
Q 011708 201 -------------------------------------------------------------------------KGLQKLT 207 (479)
Q Consensus 201 -------------------------------------------------------------------------~~~~~L~ 207 (479)
..+++|+
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~ 285 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence 2334444
Q ss_pred EEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCC
Q 011708 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287 (479)
Q Consensus 208 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 287 (479)
.|+++++.+.. .+..+..+ +|++|++++|.+..... ..+++|+.|++.++......+. ..+++|++|++++|.
T Consensus 286 ~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 286 SFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG 358 (570)
T ss_dssp EEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC
T ss_pred EEEecCccchh-hhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc
Confidence 44444443332 12223333 55555555554442211 2455666666666554332211 456788888888887
Q ss_pred CChHH--HHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHH-HHHhcCCCCCEEEccCCCCchhh
Q 011708 288 IGDEG--LVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSG 364 (479)
Q Consensus 288 ~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~ 364 (479)
+.... +..+..+++|+.|++++|.+...... +..+++|++|++++|.+....+ ..+..+++|+.|++++|.+....
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred cCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 66543 45667788888888888876553333 6678888888888876655433 34567788888888888877766
Q ss_pred HHHHhcCCCCceeeccCCccCh-HHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhcc
Q 011708 365 AAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443 (479)
Q Consensus 365 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 443 (479)
+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++| .++...+..+..+++|++|++++|.+....+..+..
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 516 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc
Confidence 6677788888888888887763 34556677888888888888 677766777788888888888888888877777888
Q ss_pred Ccccccccccccccc
Q 011708 444 LKNLRSLTLESCKVT 458 (479)
Q Consensus 444 ~~~L~~L~l~~~~l~ 458 (479)
+++|+.|++++|+++
T Consensus 517 l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 517 LTSLQKIWLHTNPWD 531 (570)
T ss_dssp CTTCCEEECCSSCBC
T ss_pred ccCCcEEEecCCccc
Confidence 888888888888765
No 14
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=6.5e-34 Score=273.05 Aligned_cols=395 Identities=24% Similarity=0.307 Sum_probs=255.2
Q ss_pred CCccEEEecCCCCChhhhhh-hccCCCCCeEeccCCCCCChhh----hHhhhCCCCCcEEEcCCCCCCChhHHHHHh-CC
Q 011708 57 SSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGG----LEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GL 130 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~l 130 (479)
+++++|+++++++++..... +..+++|++|++++|. +.+.. ...+..+++|++|++++|. +.+..+..+. .+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHH
Confidence 56889999998888776655 6788999999999864 65433 3445677889999998875 4554444443 34
Q ss_pred C----CCcEEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhh-----
Q 011708 131 I----NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK----- 201 (479)
Q Consensus 131 ~----~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----- 201 (479)
+ +|++|++++|....... ...+..+..+++|++|++++|.+++..+..+.
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~---------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 139 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGC---------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGH---------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred hhCCCceeEEEccCCCCCHHHH---------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhc
Confidence 4 57777776654322110 01123344455555555555555443333222
Q ss_pred cCCCCCEEEecCCCCCHH----HHHHHhCCCCCCEEEccCCCCChhhHHHHh-----cCCCCcEEecccccCChH----H
Q 011708 202 GLQKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNRCQLSDDGCEKFS-----KIGSLKVLNLGFNEITDE----C 268 (479)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~ 268 (479)
..++|++|++++|.+... .+..+..+++|++|++++|.+.......+. ..++|+.|++++|.++.. .
T Consensus 140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 134566666666655542 233445556666666666666554443333 245677777777766553 2
Q ss_pred HHHhcCCCCccEEeccCCCCChHHHHHh-----hCCCCCCeeeccCCCCCHHH----HHHhhCCCCCceeecCCCCCCHH
Q 011708 269 LVHLKGLTNLESLNLDSCGIGDEGLVNL-----TGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDT 339 (479)
Q Consensus 269 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~ 339 (479)
+..+..+++|++|++++|.+++.....+ ..+++|+.|++++|.++... +..+..+++|++|++++|.+.+.
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 4445566777777777776665443222 24677888888888777653 33445678888888888888776
Q ss_pred HHHHHhc-----CCCCCEEEccCCCCchhh----HHHHhcCCCCceeeccCCccChHHHHHHHc-----cCCCCceeccC
Q 011708 340 GLAALTS-----LTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHIKD-----LSSLTLLNLSQ 405 (479)
Q Consensus 340 ~~~~l~~-----~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~ 405 (479)
+...+.. .++|++|++++|.++... +..+..+++|++|++++|.+.+..+..+.. .++|++|++++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 6555432 368899999888887653 344567789999999998888776665553 57899999999
Q ss_pred CCCCCH----HHHHHHHcCCCCceeecCCCccchhhhhhhcc-----CccccccccccccccH---HHHHHhhhCCCCcc
Q 011708 406 NCNLTD----KTLELISGLTGLVSLNVSNSRITSAGLRHLKP-----LKNLRSLTLESCKVTA---NDIKRLQSRDLPNL 473 (479)
Q Consensus 406 ~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~l~~---~~~~~~~~~~~p~L 473 (479)
| .++. ..+..+..+++|++|++++|++.+.+...+.. .+.|+.|.+.++.+.. ..++.+. +..|+|
T Consensus 380 n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~-~~~p~l 457 (461)
T 1z7x_W 380 C-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE-KDKPSL 457 (461)
T ss_dssp S-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHH-HHCTTS
T ss_pred C-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHh-ccCCCc
Confidence 9 7886 56667788999999999999988876655431 2356777666665544 4455554 678888
Q ss_pred ccC
Q 011708 474 VSF 476 (479)
Q Consensus 474 ~~l 476 (479)
+.+
T Consensus 458 ~i~ 460 (461)
T 1z7x_W 458 RVI 460 (461)
T ss_dssp EEE
T ss_pred Eee
Confidence 754
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9e-36 Score=292.34 Aligned_cols=389 Identities=18% Similarity=0.149 Sum_probs=260.8
Q ss_pred cceeeeccCCCCCChHHHHHHHhCCCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEE
Q 011708 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (479)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 111 (479)
.++.+.++... +..... .....+++|++|+++++++++..+..|..+++|++|++++| .+.......++.+++|++|
T Consensus 27 ~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 27 AMKSLDLSFNK-ITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TCCEEECCSSC-CCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEE
T ss_pred CccEEECcCCc-cCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEE
Confidence 56677666553 221111 12256789999999999999887788999999999999995 6777777779999999999
Q ss_pred EcCCCCCCChhHHHHHhCCCCCcEEeccccccccccc-ccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCC
Q 011708 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190 (479)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 190 (479)
++++|.......+..+.++++|++|++++|......+ ..+.++++|++|+++++. +....+..+..+++|++|++.++
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECS
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhhccccCceEecccC
Confidence 9999964332345678899999999999976444443 468889999999999854 55556677778888888888877
Q ss_pred ccchHhHHHhhcCCCCCEEEecCCCCCHH---------------------------HHHH----HhCCC-----------
Q 011708 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAA---------------------------CLDS----LSALG----------- 228 (479)
Q Consensus 191 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---------------------------~~~~----l~~~~----------- 228 (479)
.+.......+..+++|++|++++|.+... .+.. +..++
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 76655444456677788888777755431 1111 11222
Q ss_pred ------------------------------------------------CCCEEEccCCCCChhhHHHHhcCCCCcEEecc
Q 011708 229 ------------------------------------------------SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260 (479)
Q Consensus 229 ------------------------------------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 260 (479)
+|+.|++++|.+.......+..+++|+.|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence 23333333333332222333455666666666
Q ss_pred cccCChHHHHH---hcCCCCccEEeccCCCCChHHH--HHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCC
Q 011708 261 FNEITDECLVH---LKGLTNLESLNLDSCGIGDEGL--VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335 (479)
Q Consensus 261 ~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 335 (479)
+|.+....+.. +..+++|++|++++|.+..... ..+..+++|+.|++++|.++. .+..+..+++|++|++++|.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCC
Confidence 66665544322 3455666666666665554322 335556666666666665542 22234455666666666665
Q ss_pred CCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHH
Q 011708 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415 (479)
Q Consensus 336 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 415 (479)
+...... ..++|+.|++++|+++.. ...+++|++|++++|.++..+. ...+++|++|++++| .++...+.
T Consensus 422 l~~l~~~---~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N-~l~~~~~~ 491 (549)
T 2z81_A 422 IRVVKTC---IPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRN-QLKSVPDG 491 (549)
T ss_dssp CSCCCTT---SCTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSS-CCCCCCTT
T ss_pred cccccch---hcCCceEEECCCCChhhh----cccCChhcEEECCCCccCcCCC--cccCccCCEEecCCC-ccCCcCHH
Confidence 5432111 124677777777766653 2478999999999999986533 456899999999999 78887777
Q ss_pred HHHcCCCCceeecCCCccch
Q 011708 416 LISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 416 ~l~~l~~L~~L~l~~~~~~~ 435 (479)
.+..+++|+.|++++|++..
T Consensus 492 ~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 492 IFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp GGGGCTTCCEEECCSSCBCC
T ss_pred HHhcCcccCEEEecCCCccC
Confidence 88999999999999999765
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.7e-36 Score=292.10 Aligned_cols=387 Identities=15% Similarity=0.141 Sum_probs=232.0
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|+++++.+++..+..|.++++|++|++++| .++...+..+.++++|++|++++|. +.. .|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK-LVK-ISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC-CCE-EECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc-eee-cCcc--ccCCccEE
Confidence 45566666665555554455555566666666553 3444444555555566666665553 221 2222 45556666
Q ss_pred ecccccccc-cccccccCCcCccEEeccCCCCCCccccccccCCCCC--cEEEccCCcc--chHhHHHh-----------
Q 011708 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYL----------- 200 (479)
Q Consensus 137 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l----------- 200 (479)
++++|.... ..+..++++++|++|+++++. +.. ..+..+++| +.|+++++.+ ....+..+
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 665543332 123445555556665555532 221 223334444 5555554444 21111111
Q ss_pred ---------------hcCCCCCEEEecCCC-------CCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHh---cCCCCc
Q 011708 201 ---------------KGLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLK 255 (479)
Q Consensus 201 ---------------~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~ 255 (479)
..+++|+.+++++|. +.... ..+..+++|+.|+++++.+.......+. ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 123444444444443 22221 1344444555555544444332211111 123444
Q ss_pred EEecccccCChHHHHHh-----cCC--------------------------CCccEEeccCCCCChHHHHHhhCCCCCCe
Q 011708 256 VLNLGFNEITDECLVHL-----KGL--------------------------TNLESLNLDSCGIGDEGLVNLTGLTNLES 304 (479)
Q Consensus 256 ~L~l~~~~~~~~~~~~l-----~~~--------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 304 (479)
.|++++|.+.+..+..+ ..+ .+|+.|+++++.+.... ....+++|++
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~ 328 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLH 328 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccE
Confidence 44444443332222222 222 34666666666544321 1257889999
Q ss_pred eeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHH--HHHHHhcCCCCCEEEccCCCCch-hhHHHHhcCCCCceeeccC
Q 011708 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICG 381 (479)
Q Consensus 305 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~ 381 (479)
|++++|.+++..+..+..+++|++|++++|.+... .+..+..+++|+.|++++|.+.. .+...+..+++|++|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 99999988876667788899999999999999873 33567889999999999999887 5444567889999999999
Q ss_pred CccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccH
Q 011708 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 382 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 459 (479)
|.+++..+..+. ++|++|++++| .++ .++..+..+++|++|++++|++...+...+..+++|++|++++|+++-
T Consensus 409 N~l~~~~~~~l~--~~L~~L~Ls~N-~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 409 NILTDTIFRCLP--PRIKVLDLHSN-KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SCCCGGGGGSCC--TTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcchhhhhc--ccCCEEECCCC-ccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 999876544432 79999999999 777 455556689999999999999987665568889999999999998864
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.4e-37 Score=310.02 Aligned_cols=392 Identities=17% Similarity=0.175 Sum_probs=274.8
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChh---------------------------------------
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG--------------------------------------- 97 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------------------------------- 97 (479)
.+++.|+|+++.+.+..+..+.++++|++|+|+.++.+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 58999999999999888889999999999999332321111
Q ss_pred -------------------------------------hhHhhhCCCCCcEEEcCCCCCCCh-----------------hH
Q 011708 98 -------------------------------------GLEHLRGLSNLTSLSFRRNNAITA-----------------QG 123 (479)
Q Consensus 98 -------------------------------------~~~~l~~~~~L~~L~l~~~~~~~~-----------------~~ 123 (479)
.+..++++++|++|++++|. +.. ..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccC
Confidence 33456777888888888875 444 25
Q ss_pred HHHHh--CCCCCcEEecccccccccccccccCCcCccEEeccCCCCCCc-cccccc-------cCCCCCcEEEccCCccc
Q 011708 124 MKAFA--GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPL-------SGLTNLKSLQISCSKVT 193 (479)
Q Consensus 124 ~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~-------~~~~~L~~L~l~~~~~~ 193 (479)
|..++ ++++|++|++++|......+..+.++++|++|+++++..+.+ ..+..+ ..+++|+.|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 66655 788888888888766666666778888888888887653544 333333 34458888888888777
Q ss_pred hHhHH--HhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCC-CcEEecccccCChHHHH
Q 011708 194 DSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLV 270 (479)
Q Consensus 194 ~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~ 270 (479)
..+. .+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. ..+.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 3333 6778888888888888776 334 6777788888888888777 44455677777 888888888776 3344
Q ss_pred HhcCCC--CccEEeccCCCCChHHHH---Hhh--CCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHH
Q 011708 271 HLKGLT--NLESLNLDSCGIGDEGLV---NLT--GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343 (479)
Q Consensus 271 ~l~~~~--~L~~L~l~~~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 343 (479)
.+...+ +|+.|++++|.+....+. .+. .+++|+.|++++|.++......+..+++|+.|++++|.+...+...
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 716 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence 444433 488888888877543221 111 2347888888888777555455557888888888888777443333
Q ss_pred Hh-------cCCCCCEEEccCCCCchhhHHHHh--cCCCCceeeccCCccChHHHHHHHccCCCCceeccCCC-----CC
Q 011708 344 LT-------SLTGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-----NL 409 (479)
Q Consensus 344 l~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~~ 409 (479)
+. ++++|+.|++++|+++.. +..+. .+++|+.|++++|.+++. +..+..+++|+.|++++|. .+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred hccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccc
Confidence 22 223788888888888754 33444 788888888888888874 5566778888888887631 45
Q ss_pred CHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccH
Q 011708 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 410 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 459 (479)
....+..+.++++|+.|++++|.+... +..+. ++|+.|++++|++..
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L~~I-p~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDIRKV-DEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--SSSCEEECCSCTTCE
T ss_pred cccChHHHhcCCCCCEEECCCCCCCcc-CHhhc--CCCCEEECCCCCCCc
Confidence 556667778888888888888888443 33333 688888888887755
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.1e-37 Score=303.57 Aligned_cols=382 Identities=18% Similarity=0.204 Sum_probs=310.0
Q ss_pred CCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCC------------------------------------------
Q 011708 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA------------------------------------------ 118 (479)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------------------------------------------ 118 (479)
.+++.|+|+++ .+....+..++.+++|++|++++|..
T Consensus 81 ~~V~~L~L~~~-~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTS-CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCc-ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 58999999995 56666778999999999999998842
Q ss_pred -----------------------------------CChhHHHHHhCCCCCcEEeccccccccc-----------------
Q 011708 119 -----------------------------------ITAQGMKAFAGLINLVKLDLERCTRIHG----------------- 146 (479)
Q Consensus 119 -----------------------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------- 146 (479)
++. .|..++++++|++|++++|. +.+
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCc-cccccccccccccccchhcc
Confidence 112 46678899999999999975 444
Q ss_pred -cccccc--CCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCc-cch-HhHHHhhcC------CCCCEEEecCCC
Q 011708 147 -GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIAYLKGL------QKLTLLNLEGCP 215 (479)
Q Consensus 147 -~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~ 215 (479)
.+..+. ++++|++|++++|. +.+..+..+.++++|++|++++|. ++. ..+..+..+ ++|++|++++|.
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCT-TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred cCchhhhhcccCCCCEEEecCCc-CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 677788 99999999999865 444567888999999999999998 887 667777665 899999999998
Q ss_pred CCHHHHH--HHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCC-ccEEeccCCCCChHH
Q 011708 216 VTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN-LESLNLDSCGIGDEG 292 (479)
Q Consensus 216 ~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~ 292 (479)
+. ..+. .++.+++|++|++++|.+....+ .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.+. ..
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-cc
Confidence 88 4455 78999999999999999885555 7888899999999999887 55556788888 999999999887 33
Q ss_pred HHHhhCC--CCCCeeeccCCCCCHHHHHHhh-------CCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchh
Q 011708 293 LVNLTGL--TNLESINLSFTGISDGSLRKLA-------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363 (479)
Q Consensus 293 ~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 363 (479)
+..+... ++|+.|++++|.+....+..+. .+++|++|++++|.+...+...+..+++|+.|++++|.++..
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 4444443 4899999999998876666666 678999999999999876666677899999999999999865
Q ss_pred hHHHHhcC-------CCCceeeccCCccChHHHHHHH--ccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecC-----
Q 011708 364 GAAYLRNF-------KNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS----- 429 (479)
Q Consensus 364 ~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~----- 429 (479)
+...+... ++|++|++++|.++.. +..+. .+++|++|++++| .++. .+..+..+++|+.|+++
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYN-SFSK-FPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCSSCCEEECCSCBCT
T ss_pred CHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCC-CCCC-cChhhhcCCCCCEEECCCCccc
Confidence 54444333 3999999999999965 44554 8899999999999 7776 67778899999999994
Q ss_pred -CCccchhhhhhhccCccccccccccccccHHHHHHhhhCCCCccccCCC
Q 011708 430 -NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478 (479)
Q Consensus 430 -~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~p~L~~l~~ 478 (479)
+|.+....+..+..+++|++|++++|+++. ++....|+|+.|++
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-----ip~~~~~~L~~L~L 594 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRK-----VNEKITPNISVLDI 594 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-----CCSCCCTTCCEEEC
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcCCc-----cCHhHhCcCCEEEC
Confidence 566777777889999999999999999843 33334478877765
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=316.81 Aligned_cols=396 Identities=21% Similarity=0.203 Sum_probs=224.3
Q ss_pred hCCCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhH--hhhCCCCCcEEEcCCCCCCChhHHHHHhCCC
Q 011708 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE--HLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131 (479)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 131 (479)
..+++|++|+++++.++...+..|.++++|++|++++| .+....+. .+..+++|++|++++|.......+..+++++
T Consensus 70 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp SSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred cCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence 34556666666666666555555666666666666664 33332222 2556666666666666432222224456666
Q ss_pred CCcEEecccccccccccccccCC--cCccEEeccCCCCCCccccccccCCCC------CcEEEccCCccchHhHHH----
Q 011708 132 NLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKPLSGLTN------LKSLQISCSKVTDSGIAY---- 199 (479)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~------L~~L~l~~~~~~~~~~~~---- 199 (479)
+|++|++++|......+..+..+ ++|+.|+++++. +....+..+..+++ |+.|+++++.+....+..
T Consensus 149 ~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS-LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB-SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc-cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 66666666543332223333333 344444444322 11112222222222 666666655433221111
Q ss_pred --------------------------------hhc--CCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhH
Q 011708 200 --------------------------------LKG--LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245 (479)
Q Consensus 200 --------------------------------l~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 245 (479)
+.. .++|+.|++++|.+....+..+..+++|+.|++++|.+....+
T Consensus 228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 111 1456777777666655444556666777777777777766666
Q ss_pred HHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCC-
Q 011708 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS- 324 (479)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~- 324 (479)
..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.++. +..++
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~ 382 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPS 382 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCS
T ss_pred HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCC
Confidence 666667777777777776655545556666777777777776655444455666677777776665542 11233
Q ss_pred -------------------CCceeecCCCCCCHHH-HHHHhcCCCCCEEEccCCCCchhhHH-HHhcCCCCceeeccCCc
Q 011708 325 -------------------SLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGAA-YLRNFKNLRSLEICGGG 383 (479)
Q Consensus 325 -------------------~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 383 (479)
+++.+++++|.+.... ...+..+++|+.|++++|+++..... .+..+++|+.|++++|.
T Consensus 383 L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462 (844)
T ss_dssp CSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCC
T ss_pred cchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCc
Confidence 3444445554444322 23345778888888888877653322 23456777888887777
Q ss_pred cChH-----HHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCcccccccccccccc
Q 011708 384 LTDA-----GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 384 ~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 458 (479)
+... .+..+..+++|+.|++++| .++...+..+.++++|+.|++++|.+....+..+. ++|+.|++++|+++
T Consensus 463 l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 463 LQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLL 539 (844)
T ss_dssp CSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCC
T ss_pred cccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCC
Confidence 6532 1233556677777777777 56665566667777777777777777765554443 56777777777665
Q ss_pred H
Q 011708 459 A 459 (479)
Q Consensus 459 ~ 459 (479)
.
T Consensus 540 ~ 540 (844)
T 3j0a_A 540 A 540 (844)
T ss_dssp C
T ss_pred C
Confidence 4
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=288.56 Aligned_cols=399 Identities=19% Similarity=0.138 Sum_probs=294.6
Q ss_pred cEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecc
Q 011708 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (479)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (479)
++|++++++++... ..+. ++|++|++++| .+....+..+..+++|++|++++|. +....|..|.++++|++|+++
T Consensus 3 ~~l~ls~n~l~~ip-~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIHVP-KDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSSCC-CSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccccc-cccc--ccccEEECCCC-cccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecC
Confidence 67999999988543 3333 89999999995 5777777889999999999999995 566668889999999999999
Q ss_pred cccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCC--CEEEecCCCC-
Q 011708 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL--TLLNLEGCPV- 216 (479)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~- 216 (479)
+|.. ...+.. .+++|++|+++++.......+..+.++++|++|+++++.+... .+..+++| +.|++++|.+
T Consensus 78 ~N~l-~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNKL-VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSCC-CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTT
T ss_pred CCce-eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeeccccc
Confidence 9743 344433 8999999999996543323457889999999999999998863 46667777 9999999877
Q ss_pred -CHHHHHHHhC--------------------------CCCCCEEEccCCC-------CChhhHHHHhcCCCCcEEecccc
Q 011708 217 -TAACLDSLSA--------------------------LGSLFYLNLNRCQ-------LSDDGCEKFSKIGSLKVLNLGFN 262 (479)
Q Consensus 217 -~~~~~~~l~~--------------------------~~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l~~~ 262 (479)
....+..+.. +++|+.+++++|. +.... ..+..+++|+.|++.++
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhcccccc
Confidence 3333333333 5667777777764 32222 36778889999999888
Q ss_pred cCChHHHHHhc---CCCCccEEeccCCCCChHHHHHh-----hCCCCCCeeecc--------------------------
Q 011708 263 EITDECLVHLK---GLTNLESLNLDSCGIGDEGLVNL-----TGLTNLESINLS-------------------------- 308 (479)
Q Consensus 263 ~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~-------------------------- 308 (479)
.+....+..+. ..++|++|++++|.+.+..+..+ ..++.|+.++++
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcC
Confidence 77655433321 24689999998886654333333 444444444444
Q ss_pred CCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchh--hHHHHhcCCCCceeeccCCccCh
Q 011708 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS--GAAYLRNFKNLRSLEICGGGLTD 386 (479)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~ 386 (479)
++.+.... ....+++|++|++++|.+....+..+..+++|+.|++++|+++.. .+..+..+++|++|++++|.+.+
T Consensus 311 ~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 311 GTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred CCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 44332211 015778999999999998886666778899999999999999863 34668899999999999999987
Q ss_pred -HHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccHHHHHHh
Q 011708 387 -AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465 (479)
Q Consensus 387 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 465 (479)
.+...+..+++|++|++++| .++...+..+. ++|+.|++++|.+... +..+..+++|++|++++|+++......+
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~ 464 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIF 464 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccccchhccCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHHh
Confidence 54445677899999999999 67655543332 7999999999999854 4555689999999999999885433323
Q ss_pred hhCCCCccccCCC
Q 011708 466 QSRDLPNLVSFRP 478 (479)
Q Consensus 466 ~~~~~p~L~~l~~ 478 (479)
..+++|+.+++
T Consensus 465 --~~l~~L~~L~l 475 (520)
T 2z7x_B 465 --DRLTSLQKIWL 475 (520)
T ss_dssp --TTCTTCCEEEC
T ss_pred --ccCCcccEEEC
Confidence 36788887765
No 21
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.8e-32 Score=271.73 Aligned_cols=465 Identities=21% Similarity=0.261 Sum_probs=331.0
Q ss_pred CCcHHHHHHHHHHHh-hccCCc--HHHHHhh--hcCcceeeeccCCCCCChHHHHHHHhCCCCccEEEecCCC-CChhh-
Q 011708 1 MLPRDISQQIFNELV-YSRCLT--EVSLEAF--RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSG- 73 (479)
Q Consensus 1 ~~~~e~~~~~~~~l~-~~~~~~--~~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-~~~~~- 73 (479)
.+|+|++.+||..|- .+.... ....++. .....+++.+..+...... .....++++++|+++++. +.+..
T Consensus 8 ~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~~l 84 (594)
T 2p1m_B 8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPA---TVIRRFPKVRSVELKGKPHFADFNL 84 (594)
T ss_dssp --CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHH---HHHHHCTTCCEEEEECSCGGGGGTC
T ss_pred hCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHH---HHHhhCCCceEEeccCCCchhhccc
Confidence 379999999998765 211110 0001111 0112345555555544433 345678899999999864 21111
Q ss_pred -------------hhhhccCCCCCeEeccCCCCCChhhhHhhh-CCCCCcEEEcCCCCCCChhHH-HHHhCCCCCcEEec
Q 011708 74 -------------LIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDL 138 (479)
Q Consensus 74 -------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l 138 (479)
......+++|++|++++|. +++..+..+. .+++|++|++++|..++.... ..+.++++|++|++
T Consensus 85 ~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L 163 (594)
T 2p1m_B 85 VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163 (594)
T ss_dssp SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC
T ss_pred ccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC
Confidence 1223578999999999964 7777777775 799999999999965555434 44458999999999
Q ss_pred cccccccccccc----ccCCcCccEEeccCCC-CCCcccccc-ccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEec
Q 011708 139 ERCTRIHGGLVN----LKGLMKLESLNIKWCN-CITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212 (479)
Q Consensus 139 ~~~~~~~~~~~~----~~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 212 (479)
++|......+.. ...+++|++|+++++. .+....... +..+++|++|++.++......+..+..+++|+.|++.
T Consensus 164 ~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp TTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred cCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 998633333322 2367899999999875 232222222 3467999999999883333356677889999999987
Q ss_pred CCCC--C----HHHHHHHhCCCCCCEE-EccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHH-hcCCCCccEEecc
Q 011708 213 GCPV--T----AACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLD 284 (479)
Q Consensus 213 ~~~~--~----~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~ 284 (479)
++.. . ...+..+.++++|+.+ .+..... ...+..+..+++|+.|++++|.++...... +..+++|++|++.
T Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~ 322 (594)
T 2p1m_B 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322 (594)
T ss_dssp BCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence 6632 1 1234467899999999 4443221 223334457899999999999887655443 5689999999999
Q ss_pred CCCCChHHHHHh-hCCCCCCeeecc---------CCCCCHHHHHHhh-CCCCCceeecCCCCCCHHHHHHHh-cCCCCCE
Q 011708 285 SCGIGDEGLVNL-TGLTNLESINLS---------FTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTH 352 (479)
Q Consensus 285 ~~~~~~~~~~~~-~~~~~L~~L~l~---------~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~ 352 (479)
+| +++.....+ ..+++|+.|++. .+.+++.....+. .+++|++|.+.++.+++.....+. .+++|+.
T Consensus 323 ~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~ 401 (594)
T 2p1m_B 323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401 (594)
T ss_dssp GG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred Cc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence 98 555444444 458999999983 3467776666665 489999999988999988777765 6899999
Q ss_pred EEcc--C----CCCc----hhh-HHHHhcCCCCceeeccCCccChHHHHHHHc-cCCCCceeccCCCCCCHHHHHHH-Hc
Q 011708 353 LDLF--G----ARIT----DSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELI-SG 419 (479)
Q Consensus 353 L~l~--~----~~~~----~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l-~~ 419 (479)
|+++ + +.++ +.+ ...+..+++|+.|++++ .+++.....+.. +++|++|++++| .+++.....+ ..
T Consensus 402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~ 479 (594)
T 2p1m_B 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSG 479 (594)
T ss_dssp EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHH
T ss_pred eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhc
Confidence 9999 3 4555 222 23357889999999987 788877777766 899999999999 6887777666 77
Q ss_pred CCCCceeecCCCccchhhhh-hhccCccccccccccccccHHHHHHhhhCCCCccc
Q 011708 420 LTGLVSLNVSNSRITSAGLR-HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474 (479)
Q Consensus 420 l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~p~L~ 474 (479)
+++|++|++++|++.+.+.. .+..+++|++|++++|+++..+++.+. ..+|+|.
T Consensus 480 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~lp~l~ 534 (594)
T 2p1m_B 480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG-QKMPKLN 534 (594)
T ss_dssp CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHH-HHCTTEE
T ss_pred CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH-HhCCCCE
Confidence 99999999999999777665 345689999999999999999999885 5778874
No 22
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=5.1e-33 Score=266.81 Aligned_cols=359 Identities=23% Similarity=0.239 Sum_probs=264.7
Q ss_pred CCCCeEeccCCCCCChhhhHh-hhCCCCCcEEEcCCCCCCCh----hHHHHHhCCCCCcEEecccccccccccccccCCc
Q 011708 81 SNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITA----QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155 (479)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 155 (479)
++|++|+++++ .+++..... +..+++|++|++++|. +.. ..+..+..+++|++|++++|......+..
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~----- 75 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHC----- 75 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH-----
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH-----
Confidence 45666666653 344444333 5566666666666664 332 22344455566666666554322111111
Q ss_pred CccEEeccCCCCCCccccccccCCC----CCcEEEccCCccch----HhHHHhhcCCCCCEEEecCCCCCHHHHHHHh--
Q 011708 156 KLESLNIKWCNCITDSDMKPLSGLT----NLKSLQISCSKVTD----SGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-- 225 (479)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-- 225 (479)
....++ +|++|++++|.++. ..+..+..+++|++|++++|.+....+..+.
T Consensus 76 -------------------l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 136 (461)
T 1z7x_W 76 -------------------VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG 136 (461)
T ss_dssp -------------------HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred -------------------HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH
Confidence 111222 68889998888875 3466788999999999999998765454433
Q ss_pred ---CCCCCCEEEccCCCCChhh----HHHHhcCCCCcEEecccccCChHHHHHhc-----CCCCccEEeccCCCCChHH-
Q 011708 226 ---ALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEITDECLVHLK-----GLTNLESLNLDSCGIGDEG- 292 (479)
Q Consensus 226 ---~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~- 292 (479)
..++|++|++++|.++... +..+..+++|+.|++++|.+.......+. ..++|++|++++|.++...
T Consensus 137 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred HhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 3568999999999988754 45566789999999999998766555443 4679999999999888753
Q ss_pred ---HHHhhCCCCCCeeeccCCCCCHHHHHHhh-----CCCCCceeecCCCCCCHHHH----HHHhcCCCCCEEEccCCCC
Q 011708 293 ---LVNLTGLTNLESINLSFTGISDGSLRKLA-----GLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARI 360 (479)
Q Consensus 293 ---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~ 360 (479)
+..+..+++|+.|++++|.+++.....+. .+++|++|++++|.++..+. ..+..+++|++|++++|.+
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 45567789999999999998876544433 58999999999999998753 3455689999999999999
Q ss_pred chhhHHHHh-----cCCCCceeeccCCccChHH----HHHHHccCCCCceeccCCCCCCHHHHHHHHc-----CCCCcee
Q 011708 361 TDSGAAYLR-----NFKNLRSLEICGGGLTDAG----VKHIKDLSSLTLLNLSQNCNLTDKTLELISG-----LTGLVSL 426 (479)
Q Consensus 361 ~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-----l~~L~~L 426 (479)
.+.+...+. ..++|++|++++|.+++.. +..+..+++|++|++++| .+++..+..+.. .++|++|
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEE
Confidence 876655553 2379999999999998763 445667899999999999 788776666543 7899999
Q ss_pred ecCCCccch----hhhhhhccCccccccccccccccHHHHHHhh
Q 011708 427 NVSNSRITS----AGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466 (479)
Q Consensus 427 ~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~ 466 (479)
++++|.+.+ ..+..+..+++|++|++++|+++..++..+.
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~ 419 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHH
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHH
Confidence 999999987 4456677899999999999999998887766
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.5e-35 Score=278.97 Aligned_cols=362 Identities=20% Similarity=0.185 Sum_probs=209.5
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|+++++.+++..+..|.++++|++|+++++..........+..+++|++|++++|. +....+..+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCEE
Confidence 6788888888888877777788888888888888643334445667888888888888885 455557778888888888
Q ss_pred eccccccccccccc--ccCCcCccEEeccCCCCCCccccc-cccCCCCCcEEEccCCccchHhHHHhhcC--CCCCEEEe
Q 011708 137 DLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMK-PLSGLTNLKSLQISCSKVTDSGIAYLKGL--QKLTLLNL 211 (479)
Q Consensus 137 ~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l 211 (479)
++++|......+.. +.++++|++|+++++. +....+. .+.++++|++|++++|.+....+..+..+ .+|+.|++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 88886543323333 7778888888888754 3333333 36778888888888887776555555444 56777777
Q ss_pred cCCCCCHHHHH--------HHhCCCCCCEEEccCCCCChhhHHHHhcC---CCCcEEecccccCChHHHHHhcCCCCccE
Q 011708 212 EGCPVTAACLD--------SLSALGSLFYLNLNRCQLSDDGCEKFSKI---GSLKVLNLGFNEITDECLVHLKGLTNLES 280 (479)
Q Consensus 212 ~~~~~~~~~~~--------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (479)
+++.+....+. .+..+++|++|++++|.+....+..+... .+++.|+++++........ ...++.+
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~-- 264 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDP-- 264 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCC--
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhccC--
Confidence 77755432211 12234566666666666665555444432 5566666655533211000 0000000
Q ss_pred EeccCCCCChHHHHHh--hCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCC
Q 011708 281 LNLDSCGIGDEGLVNL--TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358 (479)
Q Consensus 281 L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 358 (479)
....+ ...++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 265 -----------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 265 -----------DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp -----------CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -----------cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 00000 01245555555555554444444455555555555555555444444445555555555555
Q ss_pred CCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccch
Q 011708 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 359 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 435 (479)
.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++| .++...+..+..+++|++|++++|++..
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence 555444444555555555555555555544444555555555555555 4444333344555555555555555443
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4e-35 Score=295.02 Aligned_cols=382 Identities=16% Similarity=0.159 Sum_probs=296.6
Q ss_pred CCCCeEeccCCCCCChhhhHhhhCCCCCcEEEc-CCCCCCChh-------------------------------------
Q 011708 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQ------------------------------------- 122 (479)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~------------------------------------- 122 (479)
.+++.|+|+++ .+....+..++.+++|++|++ +++. +.+.
T Consensus 323 ~~V~~L~Ls~~-~L~G~ip~~l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGF-GAKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTT-CCEEEECGGGGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccC-CCCCcCchHHhccccceEeeeccccc-ccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 57999999995 577677789999999999999 5441 1111
Q ss_pred ---------------------------------------HHHHHhCCCCCcEEecccccccc-----------------c
Q 011708 123 ---------------------------------------GMKAFAGLINLVKLDLERCTRIH-----------------G 146 (479)
Q Consensus 123 ---------------------------------------~~~~~~~l~~L~~L~l~~~~~~~-----------------~ 146 (479)
.|..++++++|++|++++|.... .
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 45678889999999999875333 1
Q ss_pred cccccc--CCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCc-cch-HhHHHhhcC-------CCCCEEEecCCC
Q 011708 147 GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIAYLKGL-------QKLTLLNLEGCP 215 (479)
Q Consensus 147 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~-------~~L~~L~l~~~~ 215 (479)
.|..++ ++++|++|++++|.. .+..+..+.++++|+.|++++|+ ++. ..+..+..+ ++|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 666766 899999999998653 44566788899999999999997 776 566655554 499999999998
Q ss_pred CCHHHHH--HHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCC-ccEEeccCCCCChHH
Q 011708 216 VTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN-LESLNLDSCGIGDEG 292 (479)
Q Consensus 216 ~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~ 292 (479)
+. ..+. .+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. ..
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 88 4455 7889999999999999888 333 7888899999999999887 55566777888 999999999877 33
Q ss_pred HHHhhCCC--CCCeeeccCCCCCHHHHH---Hhh--CCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhH
Q 011708 293 LVNLTGLT--NLESINLSFTGISDGSLR---KLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365 (479)
Q Consensus 293 ~~~~~~~~--~L~~L~l~~~~~~~~~~~---~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 365 (479)
+..+...+ +|+.|++++|.+....+. .+. .+++|+.|++++|.+...+...+..+++|+.|++++|.+...+.
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 44444443 499999999987653221 112 34589999999999987766667789999999999999886544
Q ss_pred HHHh-------cCCCCceeeccCCccChHHHHHHH--ccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCC------
Q 011708 366 AYLR-------NFKNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN------ 430 (479)
Q Consensus 366 ~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~------ 430 (479)
..+. ++++|+.|++++|.++.. +..+. .+++|+.|++++| .++. ++..+..+++|+.|++++
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred HHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 3333 234999999999999854 45554 7899999999999 6776 566788999999999976
Q ss_pred CccchhhhhhhccCccccccccccccccHHHHHHhhhCCCCccccCCC
Q 011708 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478 (479)
Q Consensus 431 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~p~L~~l~~ 478 (479)
|.+....+..+..+++|+.|++++|++. .++....|+|+.|++
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-----~Ip~~l~~~L~~LdL 834 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDIR-----KVDEKLTPQLYILDI 834 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCCC-----BCCSCCCSSSCEEEC
T ss_pred ccccccChHHHhcCCCCCEEECCCCCCC-----ccCHhhcCCCCEEEC
Confidence 6677777788999999999999999983 334345577877765
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-34 Score=276.49 Aligned_cols=351 Identities=18% Similarity=0.196 Sum_probs=290.8
Q ss_pred CCCcEEEcCCCCCCChhHHHHHhCCCCCcEEeccccccccc-ccccccCCcCccEEeccCCCCCCccccccccCCCCCcE
Q 011708 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (479)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 184 (479)
++|++|+++++. +....+..+.++++|++|++++|..... .+..+.++++|++|+++++. +....+..+.++++|++
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCE
Confidence 789999999985 5666678899999999999999755423 34568899999999999854 55566778899999999
Q ss_pred EEccCCccchHhHHH--hhcCCCCCEEEecCCCCCHHHHHH-HhCCCCCCEEEccCCCCChhhHHHHhcC--CCCcEEec
Q 011708 185 LQISCSKVTDSGIAY--LKGLQKLTLLNLEGCPVTAACLDS-LSALGSLFYLNLNRCQLSDDGCEKFSKI--GSLKVLNL 259 (479)
Q Consensus 185 L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l 259 (479)
|++++|.++...+.. +..+++|++|++++|.+....+.. +..+++|++|++++|.+....+..+..+ .+++.+++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999999998765554 889999999999999887764544 7889999999999999887766666655 68999999
Q ss_pred ccccCChHHHHH--------hcCCCCccEEeccCCCCChHHHHHhhC---CCCCCeeeccCCCCCHHH----------HH
Q 011708 260 GFNEITDECLVH--------LKGLTNLESLNLDSCGIGDEGLVNLTG---LTNLESINLSFTGISDGS----------LR 318 (479)
Q Consensus 260 ~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~----------~~ 318 (479)
+++.+....+.. +..+++|++|++++|.+....+..+.. .++|+.|+++++...... ..
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 998776532211 235688999999999998877666643 488999999877432211 11
Q ss_pred Hhh--CCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccC
Q 011708 319 KLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396 (479)
Q Consensus 319 ~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 396 (479)
.+. ..++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 111 347899999999999887777788999999999999999988777888999999999999999988788889999
Q ss_pred CCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccH
Q 011708 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 459 (479)
+|++|++++| .++...+..+.++++|++|++++|.+...++..+..+++|++|++++|+++.
T Consensus 348 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 348 KLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 9999999999 7888778888999999999999999999877788999999999999998754
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.9e-32 Score=260.97 Aligned_cols=345 Identities=28% Similarity=0.358 Sum_probs=263.4
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|+++++.++.. ..+..+++|++|++++| .+..... +..+++|++|++++|.. ....+ +.++++|++|
T Consensus 46 ~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQI-ADITP--LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC-CCCGG--GTTCTTCCEE
T ss_pred ccccEEecCCCCCccC--cchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCcc-ccChh--hcCCCCCCEE
Confidence 4799999999888754 34788999999999986 4555433 88899999999999854 43333 8899999999
Q ss_pred ecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCC
Q 011708 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 216 (479)
++++|.. ...+ .+.++++|++|++++|. +.. ...+..+++|++|++.+ .+... ..+..+++|+.|++++|.+
T Consensus 118 ~L~~n~l-~~~~-~~~~l~~L~~L~l~~n~-l~~--~~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQI-TDID-PLKNLTNLNRLELSSNT-ISD--ISALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSCC-CCCG-GGTTCTTCSEEEEEEEE-ECC--CGGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred ECCCCCC-CCCh-HHcCCCCCCEEECCCCc-cCC--ChhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcC
Confidence 9998643 3332 37889999999998864 332 23577889999999863 33332 2378889999999999877
Q ss_pred CHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHh
Q 011708 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 296 (479)
... ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 654 247788899999999988876654 67788899999998887653 346778889999998887766443 7
Q ss_pred hCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCce
Q 011708 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376 (479)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 376 (479)
..+++|+.|++++|.+..... +..+++|+.|++++|.+..... +..+++|+.|++++|.+....+ +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 778888889988887775433 6788888888888888776443 6678888888888888876554 667888888
Q ss_pred eeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchh
Q 011708 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436 (479)
Q Consensus 377 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 436 (479)
|++++|.+++. ..+..+++|+.|++++| .+++..+ +..+++|+.|++++|++...
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCC-ccCccch--hhcCCCCCEEeccCCcccCC
Confidence 88888888775 35677888888888888 6666555 77888888888888887764
No 27
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.6e-32 Score=271.80 Aligned_cols=420 Identities=19% Similarity=0.211 Sum_probs=291.8
Q ss_pred HHHHhCCCCccEEEecCCCC-C-------------hhhhhh-hccCCCCCeEeccCCCCCChhhhHhhhC-CCC-CcEEE
Q 011708 50 DVIASQGSSLLSVDLSGSDV-T-------------DSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRG-LSN-LTSLS 112 (479)
Q Consensus 50 ~~~~~~~~~l~~L~l~~~~~-~-------------~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~-L~~L~ 112 (479)
..+...++++++|+++++.. . ...... ...+++|++|++++| .+++.....+.. +++ |++|+
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEE
Confidence 34556678899999976321 1 011112 247889999999986 577666666655 444 99999
Q ss_pred cCCCCCCChhHH-HHHhCCCCCcEEeccccccccccc----ccccCCcCccEEeccCCCCC--C-ccccccccCCCCCcE
Q 011708 113 FRRNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGL----VNLKGLMKLESLNIKWCNCI--T-DSDMKPLSGLTNLKS 184 (479)
Q Consensus 113 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~--~-~~~~~~~~~~~~L~~ 184 (479)
+++|........ ....++++|++|++++|....... .....+++|++|+++++... . ......+.++++|+.
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 988864443333 334578999999999875433321 23456889999999875432 1 122234457889999
Q ss_pred EEccCCccchHhHHHhhcCCCCCEEEecCCCCC---HHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEeccc
Q 011708 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261 (479)
Q Consensus 185 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 261 (479)
|++.++.+.. .+..+..+++|++|++++.... ......+..+++|+.++++++.. ...+..+..+++|+.|++++
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETT
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCC
Confidence 9998887775 4467788899999998754221 11122355678888888887532 23345566788999999998
Q ss_pred ccCChHHH-HHhcCCCCccEEeccCCCCChHHHHH-hhCCCCCCeeeccC-----------CCCCHHHHHHh-hCCCCCc
Q 011708 262 NEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVN-LTGLTNLESINLSF-----------TGISDGSLRKL-AGLSSLK 327 (479)
Q Consensus 262 ~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~-----------~~~~~~~~~~l-~~~~~L~ 327 (479)
|.++.... ..+..+++|++|++.++ +.+..... ...+++|+.|++++ +.+++.....+ ..+++|+
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred CcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence 88776554 34678899999999843 44444333 35688899999983 46766555543 4589999
Q ss_pred eeecCCCCCCHHHHHHHhc-CCCCCEEEcc----CCCCchh-----hHHHHhcCCCCceeeccCC--ccChHHHHHHHc-
Q 011708 328 SLNLDARQITDTGLAALTS-LTGLTHLDLF----GARITDS-----GAAYLRNFKNLRSLEICGG--GLTDAGVKHIKD- 394 (479)
Q Consensus 328 ~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~- 394 (479)
+|++..+.+++.....+.. +++|+.|+++ .+.++.. ....+..+++|++|+++.| .+++.....+..
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~ 461 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh
Confidence 9999888888877777764 8899999996 4456542 2334567899999999754 367666666554
Q ss_pred cCCCCceeccCCCCCCHHH-HHHHHcCCCCceeecCCCccchhhhhh-hccCccccccccccccccHHHHHHhhhCCCCc
Q 011708 395 LSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472 (479)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~p~ 472 (479)
+++|++|++++| .+++.. +..+.++++|++|++++|++.+.+... +..+++|++|++++|+++..++..+. ..+|.
T Consensus 462 ~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~-~~~p~ 539 (592)
T 3ogk_B 462 SPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ-MARPY 539 (592)
T ss_dssp CTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG-GCCTT
T ss_pred CccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH-HhCCC
Confidence 788999999988 677644 344578899999999999887665544 45789999999999999888888776 67777
Q ss_pred ccc
Q 011708 473 LVS 475 (479)
Q Consensus 473 L~~ 475 (479)
+..
T Consensus 540 l~~ 542 (592)
T 3ogk_B 540 WNI 542 (592)
T ss_dssp EEE
T ss_pred cEE
Confidence 654
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.7e-32 Score=258.04 Aligned_cols=344 Identities=29% Similarity=0.371 Sum_probs=160.0
Q ss_pred CCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcCccEE
Q 011708 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160 (479)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (479)
++++.|++.++ .+... ..+..+++|++|++++|. +....+ +.++++|++|++++|... ..+. +.++++|++|
T Consensus 46 ~~l~~L~l~~~-~i~~l--~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRL-GIKSI--DGVEYLNNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSS-CCCCC--TTGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCCEE
T ss_pred ccccEEecCCC-CCccC--cchhhhcCCCEEECCCCc-cCCchh--hhccccCCEEECCCCccc-cChh-hcCCCCCCEE
Confidence 45555555543 22221 124445555555555553 222211 455555555555553222 2211 4555555555
Q ss_pred eccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCC
Q 011708 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240 (479)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 240 (479)
++++|. +... ..+.++++|++|+++++.+.... .+..+++|+.|++.++ .... ..+..+++|++|++++|.+
T Consensus 118 ~L~~n~-l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~~-~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQ-ITDI--DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQ-VTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSC-CCCC--GGGTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEEES-CCCC--GGGTTCTTCCEEECCSSCC
T ss_pred ECCCCC-CCCC--hHHcCCCCCCEEECCCCccCCCh--hhccCCcccEeecCCc-ccCc--hhhccCCCCCEEECcCCcC
Confidence 555432 2211 12445555555555555444321 2445555555555432 1111 1144555555555555554
Q ss_pred ChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHh
Q 011708 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320 (479)
Q Consensus 241 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 320 (479)
.... .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +
T Consensus 190 ~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 4331 24445555555555555443322 34455555555555544432 234445555555555554443222 4
Q ss_pred hCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCc
Q 011708 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400 (479)
Q Consensus 321 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 400 (479)
..+++|+.|++++|.+..... +..+++|+.|++++|++....+ +..+++|+.|++++|.+.+..+ +..+++|++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 455555555555555444322 4445555555555555544322 4445555555555555554432 344555555
Q ss_pred eeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccH
Q 011708 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 401 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 459 (479)
|++++| .++.. ..+..+++|+.|++++|++.+..+ +..+++|+.|++++|+++.
T Consensus 336 L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 336 LFFYNN-KVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred eECCCC-ccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 555555 34332 234455555555555555544333 4455555555555554443
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.9e-33 Score=271.44 Aligned_cols=388 Identities=15% Similarity=0.124 Sum_probs=271.0
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|+++++.++...+..|.++++|++|++++| .++...+..+..+++|++|++++|.. .. .|.. .+++|++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~-lp~~--~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRL-QN-ISCC--PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCC-CE-ECSC--CCTTCSEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcC-Cc-cCcc--ccccCCEE
Confidence 68899999998888777778888899999999885 67776677788888999999998853 32 3333 78889999
Q ss_pred eccccccccc-ccccccCCcCccEEeccCCCCCCccccccccCCCCC--cEEEccCCcc--chHhHHHhh----------
Q 011708 137 DLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLK---------- 201 (479)
Q Consensus 137 ~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~---------- 201 (479)
++++|..... .+..+.++++|++|+++++. +.... +..+++| +.|+++++.+ ....+..+.
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence 9988654432 23578888899999988743 33323 3334444 8888887766 332222222
Q ss_pred ----------------cCCCCCEEEecCCCCC----HHHHHHHhCCCCCCEEEccCCCCChhhHHHH---hcCCCCcEEe
Q 011708 202 ----------------GLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVLN 258 (479)
Q Consensus 202 ----------------~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~ 258 (479)
.+++|+.++++++... ......+..+++++.+++.++.+.......+ ...++|+.|+
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~ 282 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence 3446666666665321 1122345566677777666665554322111 1234667777
Q ss_pred cccccCChHHHHHh-----c--------------------------CCCCccEEeccCCCCChHHHHHhhCCCCCCeeec
Q 011708 259 LGFNEITDECLVHL-----K--------------------------GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307 (479)
Q Consensus 259 l~~~~~~~~~~~~l-----~--------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (479)
+++|.+.+..+..+ . ...+|++|+++++.+.... ....+++|+.|++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 76665543222111 1 1244666666666554321 1157889999999
Q ss_pred cCCCCCHHHHHHhhCCCCCceeecCCCCCCHHH--HHHHhcCCCCCEEEccCCCCch-hhHHHHhcCCCCceeeccCCcc
Q 011708 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--LAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGL 384 (479)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 384 (479)
++|.+++..+..+..+++|+.|++++|.+.... +..+..+++|+.|++++|.++. .+...+..+++|++|++++|.+
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 999988766677888999999999999988633 4557789999999999999887 4444567889999999999999
Q ss_pred ChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccH
Q 011708 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 385 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 459 (479)
++..+..+. ++|++|++++| .++. ++..+..+++|+.|++++|.+...+...+..+++|+.|++++|++.-
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N-~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNN-RIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSS-CCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred Ccchhhhhc--CcCCEEECCCC-cCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 875443332 69999999999 7774 44444589999999999999997665558899999999999998763
No 30
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.98 E-value=1.4e-30 Score=257.93 Aligned_cols=418 Identities=18% Similarity=0.182 Sum_probs=312.8
Q ss_pred cceeeeccCC-------------CCCChHHHHHHHhCCCCccEEEecCCCCChhhhhhhcc-CCC-CCeEeccCCCCCCh
Q 011708 32 ALQDLCLGQY-------------PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD-CSN-LQSLDFNFCIQISD 96 (479)
Q Consensus 32 ~l~~l~l~~~-------------~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~~~ 96 (479)
.++.+.+..+ .+....|...+...+++|++|+++++.+++.....+.. +++ |++|++++|..+..
T Consensus 74 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~ 153 (592)
T 3ogk_B 74 NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT 153 (592)
T ss_dssp TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEH
T ss_pred CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCH
Confidence 5777777443 33445678888888999999999999998877777765 555 99999999876665
Q ss_pred hhhHhh-hCCCCCcEEEcCCCCCCChh----HHHHHhCCCCCcEEeccccccc----ccccccccCCcCccEEeccCCCC
Q 011708 97 GGLEHL-RGLSNLTSLSFRRNNAITAQ----GMKAFAGLINLVKLDLERCTRI----HGGLVNLKGLMKLESLNIKWCNC 167 (479)
Q Consensus 97 ~~~~~l-~~~~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~ 167 (479)
.....+ ..+++|++|++++|.. .+. .+.....+++|++|+++++... ......+.++++|++|++++|..
T Consensus 154 ~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 154 DGLLSIVTHCRKIKTLLMEESSF-SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHCTTCSEEECTTCEE-ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHhhCCCCCEEECccccc-cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 544443 4899999999999953 322 4556678999999999986543 12233456799999999998653
Q ss_pred CCccccccccCCCCCcEEEccCCccc---hHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhh
Q 011708 168 ITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244 (479)
Q Consensus 168 ~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 244 (479)
.. .+..+..+++|++|++...... ......+..+++|+.+++.++... ..+..+..+++|++|++++|.+....
T Consensus 233 ~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 233 LE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETED 309 (592)
T ss_dssp GG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred HH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHH
Confidence 32 4466778999999999753222 122234577889999999876332 23445677899999999999977655
Q ss_pred H-HHHhcCCCCcEEecccccCChHHH-HHhcCCCCccEEeccC-----------CCCChHHHHH-hhCCCCCCeeeccCC
Q 011708 245 C-EKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDS-----------CGIGDEGLVN-LTGLTNLESINLSFT 310 (479)
Q Consensus 245 ~-~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~-----------~~~~~~~~~~-~~~~~~L~~L~l~~~ 310 (479)
. ..+..+++|+.|++.+ .+..... .....+++|++|++++ +.+++..... ...+++|+.|++..+
T Consensus 310 ~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp HHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred HHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 4 4467899999999984 4444333 3346789999999993 4666655544 456899999999888
Q ss_pred CCCHHHHHHhhC-CCCCceeecC----CCCCCHH-----HHHHHhcCCCCCEEEccCCC--CchhhHHHH-hcCCCCcee
Q 011708 311 GISDGSLRKLAG-LSSLKSLNLD----ARQITDT-----GLAALTSLTGLTHLDLFGAR--ITDSGAAYL-RNFKNLRSL 377 (479)
Q Consensus 311 ~~~~~~~~~l~~-~~~L~~L~l~----~~~~~~~-----~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L 377 (479)
.+++.....+.. +++|++|+++ .+.+++. ....+.++++|+.|++++|. +++.....+ ..+++|++|
T Consensus 389 ~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L 468 (592)
T 3ogk_B 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468 (592)
T ss_dssp CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE
T ss_pred CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe
Confidence 999888888875 9999999996 4566642 23345679999999998764 666655555 458999999
Q ss_pred eccCCccChHHHH-HHHccCCCCceeccCCCCCCHHHHH-HHHcCCCCceeecCCCccchhhhhhhc-cCcccccccccc
Q 011708 378 EICGGGLTDAGVK-HIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLRHLK-PLKNLRSLTLES 454 (479)
Q Consensus 378 ~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~ 454 (479)
++++|.+++.... .+..+++|++|++++| .+++.... ....+++|+.|++++|+++..+.+.+. .+|.++...+..
T Consensus 469 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 469 LLGYVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp EECSCCSSHHHHHHHHTCCTTCCEEEEESC-CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred eccCCCCCHHHHHHHHhcCcccCeeeccCC-CCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 9999999885544 4567899999999999 47766444 446899999999999999888776663 678877776665
Q ss_pred c
Q 011708 455 C 455 (479)
Q Consensus 455 ~ 455 (479)
+
T Consensus 548 ~ 548 (592)
T 3ogk_B 548 R 548 (592)
T ss_dssp C
T ss_pred c
Confidence 5
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.1e-30 Score=240.82 Aligned_cols=307 Identities=28% Similarity=0.377 Sum_probs=190.4
Q ss_pred hhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCC
Q 011708 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181 (479)
Q Consensus 102 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 181 (479)
+..+++|++|+++++... .. +.+..+++|++|++++|. +...+. +..+++|++|++++|. +.. ...+..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~--~~~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~-i~~--~~~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SI--QGIEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNK-ITD--ISALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CC--TTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCC--CGGGTTCTT
T ss_pred chhcccccEEEEeCCccc-cc--hhhhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCc-ccC--chHHcCCCc
Confidence 345678888888887532 21 246777888888887753 322222 6677777777777653 332 234666777
Q ss_pred CcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEeccc
Q 011708 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261 (479)
Q Consensus 182 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 261 (479)
|++|+++++.+..... +..+++|+.|++++|...... ..+..+++|++|++++|.+..... +..+++|+.|++++
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 7777777776665333 566667777777666332221 125555666666666655544332 44445555555555
Q ss_pred ccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHH
Q 011708 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341 (479)
Q Consensus 262 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 341 (479)
|.+. .... +..+++|+.++++++.+..... +..+++|++|++++|.+.....
T Consensus 187 n~l~------------------------~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 187 NQIE------------------------DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp SCCC------------------------CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred Cccc------------------------cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc
Confidence 4443 3221 4445555555555554443222 4555666666666665555433
Q ss_pred HHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCC
Q 011708 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421 (479)
Q Consensus 342 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 421 (479)
+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|++++| .++...+..+..++
T Consensus 239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLT 311 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCT
T ss_pred --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC-cCCCcChhHhhccc
Confidence 55667777777777766653 2456677777777777777664 34667788888888888 67777777788888
Q ss_pred CCceeecCCCccchhhhhhhccCcccccccccccccc
Q 011708 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 458 (479)
+|+.|++++|++....+ +..+++|++|++++|+++
T Consensus 312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888888888777554 677888888888888875
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=7.9e-30 Score=234.96 Aligned_cols=301 Identities=28% Similarity=0.334 Sum_probs=180.3
Q ss_pred CCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcE
Q 011708 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
++++++|+++++.+... ..+..+++|++|++++| .++.... +..+++|++|++++|.. ... +.+.++++|++
T Consensus 43 l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~i-~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKI-TDI--SALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC-CCC--GGGTTCTTCSE
T ss_pred cccccEEEEeCCccccc--hhhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCcc-cCc--hHHcCCCcCCE
Confidence 45788888888777654 34777888888888875 4554333 77778888888887743 332 35777778888
Q ss_pred EecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCC
Q 011708 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (479)
|++++|... ..+ .+..+++|++|++++|.... ....+..+++|++|+++++.+..... +..+++|++|++++|.
T Consensus 115 L~l~~n~i~-~~~-~~~~l~~L~~L~l~~n~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 115 LYLNEDNIS-DIS-PLANLTKMYSLNLGANHNLS--DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EECTTSCCC-CCG-GGTTCTTCCEEECTTCTTCC--CCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EECcCCccc-Cch-hhccCCceeEEECCCCCCcc--cccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 888775432 222 26677777777777765444 23336666777777777666554332 5566666666666665
Q ss_pred CCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHH
Q 011708 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (479)
+....+ +..+++|+.+++++|.+....+ +..+++|+.|++++|.+. ....
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~------------------------~~~~-- 238 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT------------------------DLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC------------------------CCGG--
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC------------------------CCcc--
Confidence 543322 4455555555555555544332 444455555555554443 3222
Q ss_pred hhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCc
Q 011708 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375 (479)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 375 (479)
+..+++|+.|++++|.++.. ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+....+..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 44455555555555544432 2345556666666666655543 2345666677777777766666666666667777
Q ss_pred eeeccCCccChHHHHHHHccCCCCceeccCC
Q 011708 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 376 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (479)
+|++++|.+++..+ +..+++|++|++++|
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQ 343 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC
T ss_pred EEEccCCccccccC--hhhhhccceeehhhh
Confidence 77777776666544 566677777777776
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.9e-32 Score=263.68 Aligned_cols=302 Identities=20% Similarity=0.194 Sum_probs=232.2
Q ss_pred CCCcEEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEE
Q 011708 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (479)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 210 (479)
+++++|+++++......+..+.++++|++|+++++ .+....+..+.++++|++|++++|.++......+..+++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 58899999886554444567888899999999874 45556667788888999999988888766666678888899999
Q ss_pred ecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCCh
Q 011708 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290 (479)
Q Consensus 211 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 290 (479)
+++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|+++++.+..
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 98888777666677888888888888888877777778888888888888888877666677888888888888887776
Q ss_pred HHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhc
Q 011708 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370 (479)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 370 (479)
.....+..+++|+.|+++++......+.......+|++|++++|.++..+...+..+++|+.|++++|.++...+..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 65566777888888888877544333333344457888888888777766667777888888888888877766666777
Q ss_pred CCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccc
Q 011708 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
+++|+.|++++|.+.+..+..+..+++|+.|++++| .++...+..+..+++|+.|++++|++.
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCcc
Confidence 788888888888887776667777788888888887 666665566677778888888888765
No 34
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=3.8e-30 Score=255.05 Aligned_cols=418 Identities=21% Similarity=0.254 Sum_probs=308.7
Q ss_pred cceeeeccCCC-------------CCChHHHHHHHhCCCCccEEEecCCCCChhhhhhhc-cCCCCCeEeccCCCCCChh
Q 011708 32 ALQDLCLGQYP-------------GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK-DCSNLQSLDFNFCIQISDG 97 (479)
Q Consensus 32 ~l~~l~l~~~~-------------~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 97 (479)
.++.+.+..++ .....|...+...+++|++|+++++.+++.....+. .+++|++|++.+|..++..
T Consensus 67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 146 (594)
T 2p1m_B 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD 146 (594)
T ss_dssp TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH
T ss_pred CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH
Confidence 67777776554 223457778888899999999999999988777775 7999999999998777765
Q ss_pred hhHhh-hCCCCCcEEEcCCCCCCChhHHHHH----hCCCCCcEEeccccc-ccc-ccccc-ccCCcCccEEeccCCCCCC
Q 011708 98 GLEHL-RGLSNLTSLSFRRNNAITAQGMKAF----AGLINLVKLDLERCT-RIH-GGLVN-LKGLMKLESLNIKWCNCIT 169 (479)
Q Consensus 98 ~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~----~~l~~L~~L~l~~~~-~~~-~~~~~-~~~l~~L~~L~l~~~~~~~ 169 (479)
....+ .++++|++|++++|. +++..+..+ ..+++|++|++++|. .+. ..... ..++++|++|++++|....
T Consensus 147 ~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 147 GLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 55554 489999999999985 333333333 367899999999875 111 11222 3568999999999885554
Q ss_pred ccccccccCCCCCcEEEccCCc-------cchHhHHHhhcCCCCCEE-EecCCCCCHHHHHHHhCCCCCCEEEccCCCCC
Q 011708 170 DSDMKPLSGLTNLKSLQISCSK-------VTDSGIAYLKGLQKLTLL-NLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241 (479)
Q Consensus 170 ~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 241 (479)
+ .+..+..+++|+.|++..+. +.. ....+.++++|+.+ .+.+... ...+..+..+++|++|++++|.+.
T Consensus 226 ~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 226 K-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp H-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCC
T ss_pred H-HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCC
Confidence 4 45566788999999976542 222 33467889999998 3443322 222333446789999999999977
Q ss_pred hhhHH-HHhcCCCCcEEecccccCChHHHHHh-cCCCCccEEecc---------CCCCChHHHHHhh-CCCCCCeeeccC
Q 011708 242 DDGCE-KFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLD---------SCGIGDEGLVNLT-GLTNLESINLSF 309 (479)
Q Consensus 242 ~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~---------~~~~~~~~~~~~~-~~~~L~~L~l~~ 309 (479)
..... .+..+++|+.|++.+| +.......+ ..+++|++|++. .+.+++.....+. .+++|+.|.+..
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 65443 3568899999999988 444433333 458999999983 3466666655554 489999998888
Q ss_pred CCCCHHHHHHhh-CCCCCceeecC--C----CCCC----HHHHH-HHhcCCCCCEEEccCCCCchhhHHHHhc-CCCCce
Q 011708 310 TGISDGSLRKLA-GLSSLKSLNLD--A----RQIT----DTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRN-FKNLRS 376 (479)
Q Consensus 310 ~~~~~~~~~~l~-~~~~L~~L~l~--~----~~~~----~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~ 376 (479)
+.+++.....+. .+++|+.|+++ + +.++ +.+.. .+..+++|+.|++++ .+++.....+.. +++|+.
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~ 460 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEM 460 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCE
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccE
Confidence 899887777776 58999999998 3 4565 33332 356889999999987 777776666654 899999
Q ss_pred eeccCCccChHHHHHH-HccCCCCceeccCCCCCCHHHHHH-HHcCCCCceeecCCCccchhhhhhh-ccCccccccccc
Q 011708 377 LEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLEL-ISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLE 453 (479)
Q Consensus 377 L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~ 453 (479)
|++++|.+++.....+ ..+++|++|++++| .+++..... ...+++|+.|++++|+++..+...+ ..+|.|+...+.
T Consensus 461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp EEEESCCSSHHHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred eeccCCCCcHHHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 9999999988777666 66899999999999 567666554 4568999999999999988777776 568888776666
Q ss_pred ccc
Q 011708 454 SCK 456 (479)
Q Consensus 454 ~~~ 456 (479)
.+.
T Consensus 540 ~~~ 542 (594)
T 2p1m_B 540 ERG 542 (594)
T ss_dssp SSS
T ss_pred CCC
Confidence 553
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=5.8e-32 Score=270.52 Aligned_cols=397 Identities=22% Similarity=0.214 Sum_probs=268.0
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|++++++++......|.++++|++|+|++| .++.....+|.++++|++|++++|. +....+..|.++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEE
Confidence 57999999999999888888999999999999995 6777777889999999999999995 566666778999999999
Q ss_pred ecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCC-----------
Q 011708 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK----------- 205 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~----------- 205 (479)
++++|.........++++++|++|+++++.......+..+..+++|++|++++|.++...+..+..+++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 999975444444568999999999999865444345677788999999999999876544433322211
Q ss_pred ----------------CCEEEecCCCCCH-HHHHHHhCCCCCCEEEc---------------------------------
Q 011708 206 ----------------LTLLNLEGCPVTA-ACLDSLSALGSLFYLNL--------------------------------- 235 (479)
Q Consensus 206 ----------------L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l--------------------------------- 235 (479)
++.+++.++.... .....+..+..++...+
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 1223333332221 12222333333333222
Q ss_pred ------------------------cCCCCChhhHHHHhcCCCCcEEecccccCChHHH-------------------HHh
Q 011708 236 ------------------------NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-------------------VHL 272 (479)
Q Consensus 236 ------------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------~~l 272 (479)
..+.+.. ...+.....++.|++.++.+..... ...
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 1111100 0112233445555555443221100 011
Q ss_pred cCCCCccEEeccCCCCChH--HHHHhhC-----------------------CCCCCeeeccCCCCCH-HHHHHhhCCCCC
Q 011708 273 KGLTNLESLNLDSCGIGDE--GLVNLTG-----------------------LTNLESINLSFTGISD-GSLRKLAGLSSL 326 (479)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~--~~~~~~~-----------------------~~~L~~L~l~~~~~~~-~~~~~l~~~~~L 326 (479)
..+++|+.++++++.+... ....... +++|+.+++..+.... .....+..++++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 2356777777776654321 1222233 4444444444432211 111234466777
Q ss_pred ceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCch-hhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccC
Q 011708 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405 (479)
Q Consensus 327 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 405 (479)
+.++++.+.+.......+..++.++.|++++|.... ..+..+..+++|++|++++|.+++..+..+..+++|++|+|++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 888888777666555566678889999998886443 3455677888999999999999888788888899999999999
Q ss_pred CCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccC-cccccccccccccc
Q 011708 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL-KNLRSLTLESCKVT 458 (479)
Q Consensus 406 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~ 458 (479)
| +++...+..+.++++|+.|++++|.+....+..+..+ ++|++|++++|++.
T Consensus 528 N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 528 N-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp S-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred C-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 8 7887777778889999999999999988888888777 58999999887664
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=9.6e-32 Score=263.74 Aligned_cols=369 Identities=16% Similarity=0.141 Sum_probs=268.9
Q ss_pred hCCCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCC
Q 011708 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (479)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 133 (479)
..+++|++|+++++.+++..+..|.++++|++|+++++ .++..... .+++|++|++++|.......|..+.++++|
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcc
Confidence 56789999999999999888888999999999999995 56643332 799999999999964332345789999999
Q ss_pred cEEecccccccccccccccCCcCc--cEEeccCCCCC-Cccccccc--------------------------cCCCCCcE
Q 011708 134 VKLDLERCTRIHGGLVNLKGLMKL--ESLNIKWCNCI-TDSDMKPL--------------------------SGLTNLKS 184 (479)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~~-~~~~~~~~--------------------------~~~~~L~~ 184 (479)
++|+++++..... .+..+++| ++|+++++... ....+..+ ..+++|+.
T Consensus 149 ~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 225 (562)
T 3a79_B 149 TFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225 (562)
T ss_dssp CEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred cEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEE
Confidence 9999999654433 34445555 99999986430 22222222 24567788
Q ss_pred EEccCCccc----hHhHHHhhcCCCCCEEEecCCCCCHHHHHH---HhCCCCCCEEEccCCCCChhhHH-----------
Q 011708 185 LQISCSKVT----DSGIAYLKGLQKLTLLNLEGCPVTAACLDS---LSALGSLFYLNLNRCQLSDDGCE----------- 246 (479)
Q Consensus 185 L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~----------- 246 (479)
++++++... ......+..+++|+.+++.++.+....... ....++|++|++++|.+....+.
T Consensus 226 L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~ 305 (562)
T 3a79_B 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305 (562)
T ss_dssp EEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC
T ss_pred ecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccch
Confidence 888776421 122345677777777777776554432221 11234777777777655422111
Q ss_pred --------------------HHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeee
Q 011708 247 --------------------KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESIN 306 (479)
Q Consensus 247 --------------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 306 (479)
.+....+++.|+++++.+.... ....+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 306 ~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 383 (562)
T 3a79_B 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383 (562)
T ss_dssp EEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEE
T ss_pred heehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEE
Confidence 1112356888888888765322 125788999999999999887777788999999999
Q ss_pred ccCCCCCH--HHHHHhhCCCCCceeecCCCCCCH-HHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCc
Q 011708 307 LSFTGISD--GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383 (479)
Q Consensus 307 l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 383 (479)
+++|.++. ..+..+..+++|++|++++|.+.. .+...+..+++|+.|++++|.++...+..+. ++|++|++++|.
T Consensus 384 L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~ 461 (562)
T 3a79_B 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR 461 (562)
T ss_dssp CCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC
T ss_pred CCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc
Confidence 99998886 345567899999999999998876 4444566789999999999998765443222 699999999999
Q ss_pred cChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccch
Q 011708 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 384 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 435 (479)
++..+. .+..+++|++|++++| .++......+..+++|+.|++++|++..
T Consensus 462 l~~ip~-~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 462 IMSIPK-DVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCCCCT-TTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CcccCh-hhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 986543 3448999999999999 7775444447889999999999998764
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=5.7e-31 Score=253.30 Aligned_cols=302 Identities=24% Similarity=0.264 Sum_probs=144.0
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
++++.|++++++++......|.++++|++|+++++ .+....+..+.++++|++|++++|. +....+..|.++++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEE
Confidence 34555555555555544444555555555555553 3444444445555555555555543 222222334445555555
Q ss_pred ecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCC
Q 011708 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 216 (479)
++++|......+..+.++++|++|++ +++.+....+..+..+++|++|++++|.+
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l-------------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEV-------------------------GDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEE-------------------------CCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred ECCCCccccCChhHccccccCCEEEC-------------------------CCCccceeChhhccCCCCCCEEECCCCcC
Confidence 55544332222333444444444444 44444433333344444444444444444
Q ss_pred CHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHh
Q 011708 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 296 (479)
....+..+..+++|+.|++++|.+.......+..+++|+.|+++++......+.......+|+.|++++|.+.......+
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence 44333344444455555555444444433344444455555554443322222222223345555555554444433444
Q ss_pred hCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCce
Q 011708 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376 (479)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 376 (479)
..+++|+.|++++|.++......+..+++|+.|++++|.+....+..+..+++|+.|++++|.++..++..+..+++|++
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 55555555555555544433334445555555555555555444444445555555555555555544444455555555
Q ss_pred eeccCCccC
Q 011708 377 LEICGGGLT 385 (479)
Q Consensus 377 L~l~~~~~~ 385 (479)
|++++|.+.
T Consensus 325 L~l~~N~l~ 333 (477)
T 2id5_A 325 LILDSNPLA 333 (477)
T ss_dssp EECCSSCEE
T ss_pred EEccCCCcc
Confidence 555555443
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.9e-30 Score=242.83 Aligned_cols=317 Identities=17% Similarity=0.183 Sum_probs=189.3
Q ss_pred CCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCc
Q 011708 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183 (479)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 183 (479)
.++++++|+++++. +....+..+.++++|++|+++++......+..+..+++|++|+++++. +....+..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence 45789999999874 455555667889999999999875444444567888888898888754 5555566677888888
Q ss_pred EEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEeccccc
Q 011708 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263 (479)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (479)
+|+++++.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+.... +..+++|+.+++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccc
Confidence 8888888877655555677888888888888776655556777778888888887776542 4456677777777766
Q ss_pred CChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHH
Q 011708 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343 (479)
Q Consensus 264 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 343 (479)
+.. +...++|+.|++++|.+..... ...++|+.|++++|.+++. ..+..+++|++|++++|.+....+..
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 543 2344566667766665543211 1234555555555554432 23444455555555555444433334
Q ss_pred HhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCC
Q 011708 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423 (479)
Q Consensus 344 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 423 (479)
+..+++|+.|++++|+++ +.. ..+..+++|++|++++| .+.. .+..+..+++|
T Consensus 268 ~~~l~~L~~L~L~~n~l~------------------------~~~-~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~l~~L 320 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLV------------------------ALN-LYGQPIPTLKVLDLSHN-HLLH-VERNQPQFDRL 320 (390)
T ss_dssp GTTCSSCCEEECCSSCCC------------------------EEE-CSSSCCTTCCEEECCSS-CCCC-CGGGHHHHTTC
T ss_pred ccccccCCEEECCCCcCc------------------------ccC-cccCCCCCCCEEECCCC-ccee-cCccccccCcC
Confidence 444445555555554444 321 11223445555555555 3332 12223444555
Q ss_pred ceeecCCCccchhhhhhhccCccccccccccccccHHHHHHh
Q 011708 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465 (479)
Q Consensus 424 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 465 (479)
+.|++++|++.... +..+++|+.|++++|+++......+
T Consensus 321 ~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 321 ENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp SEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred CEEECCCCccceeC---chhhccCCEEEcCCCCccchhHHHH
Confidence 55555555544432 3344555555555555555444443
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.8e-29 Score=236.26 Aligned_cols=312 Identities=17% Similarity=0.140 Sum_probs=250.0
Q ss_pred cCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcCcc
Q 011708 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (479)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (479)
.+++++.|+++++ .++......+..+++|++|+++++. +....+..+.++++|++|++++|......+..+.++++|+
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4689999999995 5777666778899999999999985 5566567889999999999999765544556689999999
Q ss_pred EEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCC
Q 011708 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (479)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 238 (479)
+|+++++. +.......+.++++|++|+++++.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|
T Consensus 121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 99999854 5544555578899999999999999877777789999999999999987764 3567899999999999
Q ss_pred CCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHH
Q 011708 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318 (479)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 318 (479)
.+... ...++|+.|++++|.+.... ....++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+.
T Consensus 197 ~l~~~-----~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLSTL-----AIPIAVEELDASHNSINVVR---GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSEE-----ECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccccc-----CCCCcceEEECCCCeeeecc---ccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 87643 45578999999999887542 13457999999999988764 4678899999999999999887777
Q ss_pred HhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCC
Q 011708 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398 (479)
Q Consensus 319 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 398 (479)
.+..+++|++|++++|.++..+. .+..+++|+.|++++|++...+ ..+..+++|++|++++|.++... +..+++|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L 341 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 341 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCG-GGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HccccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecC-ccccccCcCCEEECCCCccceeC---chhhccC
Confidence 88899999999999998876432 2346788999999998887543 33566788888888888777653 4556777
Q ss_pred CceeccCCCCCCHH
Q 011708 399 TLLNLSQNCNLTDK 412 (479)
Q Consensus 399 ~~L~l~~~~~~~~~ 412 (479)
+.|++++| .+...
T Consensus 342 ~~L~l~~N-~~~~~ 354 (390)
T 3o6n_A 342 KNLTLSHN-DWDCN 354 (390)
T ss_dssp SEEECCSS-CEEHH
T ss_pred CEEEcCCC-Cccch
Confidence 77777777 45443
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.4e-29 Score=247.88 Aligned_cols=311 Identities=16% Similarity=0.172 Sum_probs=209.5
Q ss_pred CCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCc
Q 011708 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183 (479)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 183 (479)
.+.+++.++++++. +....+..+.++++|++|++++|......+..+..+++|++|+++++. +....+..+.++++|+
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCC
Confidence 35789999999884 455556678889999999999875444444578889999999999854 5556666778889999
Q ss_pred EEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEeccccc
Q 011708 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263 (479)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (479)
+|++++|.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+.... +..+++|+.|++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence 9999998888666556788888999999888877766667788888888888888777643 4567778888888876
Q ss_pred CChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHH
Q 011708 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343 (479)
Q Consensus 264 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 343 (479)
+.. +...++|+.|++++|.+..... ...++|+.|++++|.+++. ..+..+++|+.|++++|.+....+..
T Consensus 204 l~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 204 LST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp CSE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHH
Confidence 653 3455677788887776654221 1235677777776666542 34556666666666666666555555
Q ss_pred HhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCC
Q 011708 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423 (479)
Q Consensus 344 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 423 (479)
+..+++|+.|++++|.++..+ ..+..+++|+.|++++|.+... +..+..+++|+.|++++| .+.... +..+++|
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N-~l~~~~---~~~~~~L 347 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTL 347 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCC
T ss_pred hcCccCCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCC-CCCCcC---hhhcCCC
Confidence 556666666666666665432 2234456666666666665543 233455566666666666 343321 3445556
Q ss_pred ceeecCCCccch
Q 011708 424 VSLNVSNSRITS 435 (479)
Q Consensus 424 ~~L~l~~~~~~~ 435 (479)
+.|++++|++..
T Consensus 348 ~~L~l~~N~~~~ 359 (597)
T 3oja_B 348 KNLTLSHNDWDC 359 (597)
T ss_dssp SEEECCSSCEEH
T ss_pred CEEEeeCCCCCC
Confidence 666666665544
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.5e-28 Score=233.00 Aligned_cols=223 Identities=20% Similarity=0.141 Sum_probs=155.0
Q ss_pred CCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcE
Q 011708 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
++++++|+++++.+++. ..+..+++|++|++++| .++.. .++.+++|++|++++|.. ... + ++++++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l-~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKL-TNL-D--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCCC--TTGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCC-SCC-C--CTTCTTCCE
T ss_pred cCCCCEEEccCCCcccC--hhhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCC-cee-e--cCCCCcCCE
Confidence 46788888888888765 25778888888888885 45553 267788888888888753 332 2 777888888
Q ss_pred EecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCC
Q 011708 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (479)
|++++|.. ... .+..+++|++|+++++. +... .+..+++|++|++++|...... .+..+++|+.|++++|.
T Consensus 111 L~L~~N~l-~~l--~~~~l~~L~~L~l~~N~-l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 111 LNCDTNKL-TKL--DVSQNPLLTYLNCARNT-LTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EECCSSCC-SCC--CCTTCTTCCEEECTTSC-CSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EECCCCcC-Cee--cCCCCCcCCEEECCCCc-ccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 88888643 332 27778888888888754 3322 2667788888888877432222 36677888888888887
Q ss_pred CCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHH
Q 011708 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (479)
+.... +..+++|+.|++++|.+... .+..+++|+.|++++|.+... + +..+++|+.|++++|.+....
T Consensus 182 l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred cceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---
Confidence 76632 66778888888888877764 366778888888888877763 2 667788888888888776543
Q ss_pred hhCCCCCCeeeccC
Q 011708 296 LTGLTNLESINLSF 309 (479)
Q Consensus 296 ~~~~~~L~~L~l~~ 309 (479)
+..+++|+.|+++.
T Consensus 250 ~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQ 263 (457)
T ss_dssp CTTCTTCCEEECTT
T ss_pred HHHCCCCCEEeccC
Confidence 34455555555543
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.2e-28 Score=243.01 Aligned_cols=314 Identities=17% Similarity=0.145 Sum_probs=258.6
Q ss_pred cCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcCcc
Q 011708 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (479)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (479)
.+++++.++++++ .+.......+..+++|++|++++|. +....+..|..+++|++|++++|......+..++++++|+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 4579999999985 5777777778899999999999985 5666667899999999999999765544555679999999
Q ss_pred EEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCC
Q 011708 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (479)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 238 (479)
+|+++++. +.......+.++++|++|++++|.+....+..+..+++|++|++++|.+... .++.+++|+.|++++|
T Consensus 127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence 99999864 5555556678999999999999999887777889999999999999987764 2567889999999999
Q ss_pred CCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHH
Q 011708 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR 318 (479)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 318 (479)
.+.. +...++|+.|++++|.+..... ...++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+.
T Consensus 203 ~l~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH
Confidence 8764 3456789999999998764322 2346899999999988763 5678899999999999999887777
Q ss_pred HhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCC
Q 011708 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398 (479)
Q Consensus 319 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 398 (479)
.+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.+.+.. +..+++|
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L 347 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 347 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCG-GGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HhcCccCCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCCCccC-cccccCCCCCEEECCCCCCCCcC---hhhcCCC
Confidence 8899999999999999988743 23356899999999999998653 45678899999999999998763 5668999
Q ss_pred CceeccCCCCCCHHHH
Q 011708 399 TLLNLSQNCNLTDKTL 414 (479)
Q Consensus 399 ~~L~l~~~~~~~~~~~ 414 (479)
+.|++++| .+.....
T Consensus 348 ~~L~l~~N-~~~~~~~ 362 (597)
T 3oja_B 348 KNLTLSHN-DWDCNSL 362 (597)
T ss_dssp SEEECCSS-CEEHHHH
T ss_pred CEEEeeCC-CCCChhH
Confidence 99999999 5654443
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=9.2e-30 Score=254.59 Aligned_cols=390 Identities=21% Similarity=0.227 Sum_probs=270.1
Q ss_pred CCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcCccEE
Q 011708 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160 (479)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (479)
+++++|+|++ +.++......|.++++|++|++++|. +....+.+|.++++|++|++++|......+..|.++++|++|
T Consensus 52 ~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 3899999999 57888888889999999999999995 566667789999999999999975444444568999999999
Q ss_pred eccCCCCCCccccccccCCCCCcEEEccCCccchH-hHHHhhcCCCCCEEEecCCCCCHHHHHHHhC---CC-CCCEEEc
Q 011708 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSA---LG-SLFYLNL 235 (479)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~-~L~~L~l 235 (479)
+++++. +.......+.++++|++|++++|.+... .+..+..+++|++|++++|.+....+..+.. ++ ....+++
T Consensus 130 ~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 130 VAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp ECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 999854 5555566788999999999999988653 3456788999999999999876544433332 21 2234444
Q ss_pred cCCCCCh------------------------hhHHHHhcCCCCcEEecc-------------------------------
Q 011708 236 NRCQLSD------------------------DGCEKFSKIGSLKVLNLG------------------------------- 260 (479)
Q Consensus 236 ~~~~~~~------------------------~~~~~~~~~~~L~~L~l~------------------------------- 260 (479)
+.+.+.. .....+..+..++...+.
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 4443321 112223333333332221
Q ss_pred --------------------------cccCChHHHHHhcCCCCccEEeccCCCCChHHH-------------------HH
Q 011708 261 --------------------------FNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-------------------VN 295 (479)
Q Consensus 261 --------------------------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-------------------~~ 295 (479)
.+.+.. ...+.....++.|++.++.+..... ..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 366 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 366 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC
T ss_pred hhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc
Confidence 111000 0112334567777777664332111 11
Q ss_pred hhCCCCCCeeeccCCCCCHH--HHHHhhCCCCCceeecCCC-----------------------CCCHH-HHHHHhcCCC
Q 011708 296 LTGLTNLESINLSFTGISDG--SLRKLAGLSSLKSLNLDAR-----------------------QITDT-GLAALTSLTG 349 (479)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~-----------------------~~~~~-~~~~l~~~~~ 349 (479)
...+++|+.++++.+.+... .......+.+|+.+++..+ ..... ....+..+++
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccc
Confidence 22468899999988865421 1222334444555544433 22111 1123456778
Q ss_pred CCEEEccCCCCchhhHHHHhcCCCCceeeccCCccCh-HHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeec
Q 011708 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428 (479)
Q Consensus 350 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 428 (479)
++.++++.|.+....+..+..++.++.|++++|.+.. ..+..+..+++|++|++++| .++...+..+.++++|++|++
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEEC
Confidence 8888888888877666677888999999999986543 34556778899999999999 888888888999999999999
Q ss_pred CCCccchhhhhhhccCccccccccccccccHHHHHHhhhCCC-CccccCCC
Q 011708 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL-PNLVSFRP 478 (479)
Q Consensus 429 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-p~L~~l~~ 478 (479)
++|.+....+..+..+++|++|++++|+++......+. .+ ++|+.|++
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~~L~~L~L 574 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNL 574 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT--CCCTTCCEEEC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH--hhhCcCCEEEe
Confidence 99999998888899999999999999998876555554 44 57777765
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=9.2e-28 Score=227.65 Aligned_cols=337 Identities=20% Similarity=0.169 Sum_probs=225.7
Q ss_pred hhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccC
Q 011708 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153 (479)
Q Consensus 74 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 153 (479)
...+.++++|++|+++++ .++.. ..+..+++|++|++++|. +... + ++.+++|++|++++|. +... .+.+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n-~l~~~--~~l~~l~~L~~L~Ls~n~-l~~~-~--~~~l~~L~~L~Ls~N~-l~~~--~~~~ 104 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNS-SITDM--TGIEKLTGLTKLICTSNN-ITTL-D--LSQNTNLTYLACDSNK-LTNL--DVTP 104 (457)
T ss_dssp EEEHHHHTTCCEEECCSS-CCCCC--TTGGGCTTCSEEECCSSC-CSCC-C--CTTCTTCSEEECCSSC-CSCC--CCTT
T ss_pred ccChhHcCCCCEEEccCC-CcccC--hhhcccCCCCEEEccCCc-CCeE-c--cccCCCCCEEECcCCC-Ccee--ecCC
Confidence 345778899999999995 56654 368899999999999996 4443 2 8899999999999975 3333 3888
Q ss_pred CcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEE
Q 011708 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233 (479)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 233 (479)
+++|++|+++++. +... .+..+++|++|++++|.++.. .++.+++|++|++++|...... .+..+++|++|
T Consensus 105 l~~L~~L~L~~N~-l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 105 LTKLTYLNCDTNK-LTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp CTTCCEEECCSSC-CSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCcCCEEECCCCc-CCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 9999999999864 4432 278899999999999988874 3788999999999999443322 46788999999
Q ss_pred EccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCC
Q 011708 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313 (479)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 313 (479)
++++|.+.... +..+++|+.|++++|.++.. .+..+++|+.|++++|.+.... +..+++|+.|++++|.++
T Consensus 176 ~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCS
T ss_pred ECCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCC
Confidence 99999888753 77889999999999988764 3778899999999999888732 778899999999999887
Q ss_pred HHHHHHhhCCCCCceeecCCCCCCHHHH--------HHHhcCCCCCEEEccCCCCchhhHH--------HHhcCCCCcee
Q 011708 314 DGSLRKLAGLSSLKSLNLDARQITDTGL--------AALTSLTGLTHLDLFGARITDSGAA--------YLRNFKNLRSL 377 (479)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~--------~~l~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L 377 (479)
... +..+++|+.|+++.+.+..... ..+..+++|+.|++++|......+. .+..+++|++|
T Consensus 247 ~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 247 ELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp CCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred CcC---HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence 643 4456666666555433221100 0123456666666666653322111 02233444444
Q ss_pred eccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccc
Q 011708 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457 (479)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 457 (479)
++++|.+++. .+..+++|+.|++++| .+++ ++.|..|.+++|.+... ..+..|..+++++|.+
T Consensus 324 ~L~~N~l~~l---~l~~l~~L~~L~l~~N-~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l 386 (457)
T 3bz5_A 324 YLNNTELTEL---DVSHNTKLKSLSCVNA-HIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSL 386 (457)
T ss_dssp ECTTCCCSCC---CCTTCTTCSEEECCSS-CCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBE
T ss_pred ECCCCccccc---ccccCCcCcEEECCCC-CCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcE
Confidence 4444444432 1333444444444444 2221 23344444444433322 2345566667776665
Q ss_pred c
Q 011708 458 T 458 (479)
Q Consensus 458 ~ 458 (479)
+
T Consensus 387 ~ 387 (457)
T 3bz5_A 387 T 387 (457)
T ss_dssp E
T ss_pred E
Confidence 4
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=6.5e-28 Score=220.26 Aligned_cols=269 Identities=20% Similarity=0.198 Sum_probs=153.6
Q ss_pred CCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEec
Q 011708 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (479)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 259 (479)
++++.|+++++.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+...... ..++|+.|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~---~~~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK---MPKTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS---CCTTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh---hcccccEEEC
Confidence 3455555555555444333445555555555555544444344455555555555555554432211 1145556666
Q ss_pred ccccCChHHHHHhcCCCCccEEeccCCCCCh--HHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCC
Q 011708 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337 (479)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (479)
++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++.... ...++|++|++++|.+.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---SCCTTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc---cccccCCEEECCCCcCC
Confidence 5555554444455555666666666555432 223344556666666666665543111 11256777777777666
Q ss_pred HHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHH
Q 011708 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417 (479)
Q Consensus 338 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 417 (479)
...+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++.. +..+..+++|++|++++| .++......+
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~i~~~~~~~f 283 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNN-NISAIGSNDF 283 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSS-CCCCCCTTSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCC-cCCccChhhc
Confidence 65555566677777777777777665555566677777777777776643 344566677777777777 5655444444
Q ss_pred H------cCCCCceeecCCCccch--hhhhhhccCcccccccccccc
Q 011708 418 S------GLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCK 456 (479)
Q Consensus 418 ~------~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~ 456 (479)
. ..+.|+.|++++|++.. ..+..+..+++++.+++++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2 23677888888887754 344667778888888888764
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=4.9e-27 Score=222.49 Aligned_cols=351 Identities=17% Similarity=0.064 Sum_probs=218.9
Q ss_pred hCCCCccEEEecCCCCChhhhhhhccCCC-------------CCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCC
Q 011708 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSN-------------LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120 (479)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 120 (479)
..+.+++.|+++++.+.+..+..+.++++ ++.|++++|. ++.... ..++|++|++++|.. .
T Consensus 31 ~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~----~~~~L~~L~l~~n~l-~ 104 (454)
T 1jl5_A 31 ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE----LPPHLESLVASCNSL-T 104 (454)
T ss_dssp ---CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS----CCTTCSEEECCSSCC-S
T ss_pred hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCC----CcCCCCEEEccCCcC-C
Confidence 45667777777776655555555555443 4777777643 333211 135778888877643 3
Q ss_pred hhHHHHHhCCCCCcEEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHh
Q 011708 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200 (479)
Q Consensus 121 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 200 (479)
. .|. .+++|++|++++|.. ...+. + .++|++|+++++. +.. .+ .+.++++|++|++++|.++...
T Consensus 105 ~-lp~---~~~~L~~L~l~~n~l-~~l~~-~--~~~L~~L~L~~n~-l~~-lp-~~~~l~~L~~L~l~~N~l~~lp---- 169 (454)
T 1jl5_A 105 E-LPE---LPQSLKSLLVDNNNL-KALSD-L--PPLLEYLGVSNNQ-LEK-LP-ELQNSSFLKIIDVDNNSLKKLP---- 169 (454)
T ss_dssp S-CCC---CCTTCCEEECCSSCC-SCCCS-C--CTTCCEEECCSSC-CSS-CC-CCTTCTTCCEEECCSSCCSCCC----
T ss_pred c-ccc---ccCCCcEEECCCCcc-CcccC-C--CCCCCEEECcCCC-CCC-Cc-ccCCCCCCCEEECCCCcCcccC----
Confidence 2 221 246788888877532 22111 1 1578888888754 332 22 4777888888888888776421
Q ss_pred hcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccE
Q 011708 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280 (479)
Q Consensus 201 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (479)
...++|++|++++|.+... + .++.+++|++|++++|.+.... ...++|+.|++++|.+.. .+ .+..+++|++
T Consensus 170 ~~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~ 241 (454)
T 1jl5_A 170 DLPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP----DLPLSLESIVAGNNILEE-LP-ELQNLPFLTT 241 (454)
T ss_dssp CCCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred CCcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC----CCcCcccEEECcCCcCCc-cc-ccCCCCCCCE
Confidence 1235788888888877653 2 4777888888888888776422 123578888888887763 23 3677888888
Q ss_pred EeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCC
Q 011708 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360 (479)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 360 (479)
|++++|.+.... ..+++|+.|++++|.++... ..+++|+.|++++|.++..+ ...++|+.|++++|.+
T Consensus 242 L~l~~N~l~~l~----~~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l~~l~----~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 242 IYADNNLLKTLP----DLPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEI 309 (454)
T ss_dssp EECCSSCCSSCC----SCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCC
T ss_pred EECCCCcCCccc----ccccccCEEECCCCcccccC----cccCcCCEEECcCCccCccc----CcCCcCCEEECcCCcC
Confidence 888888776421 13478888888888766421 13478888888888776522 1126788899988887
Q ss_pred chhhHHHHhcC-CCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccch--hh
Q 011708 361 TDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--AG 437 (479)
Q Consensus 361 ~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~ 437 (479)
+.. ..+ ++|++|++++|.+++... .+++|++|++++| .++... . .+++|+.|++++|++.. ..
T Consensus 310 ~~i-----~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N-~l~~lp-~---~l~~L~~L~L~~N~l~~l~~i 375 (454)
T 1jl5_A 310 RSL-----CDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFN-HLAEVP-E---LPQNLKQLHVEYNPLREFPDI 375 (454)
T ss_dssp SEE-----CCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSCCC-C---CCTTCCEEECCSSCCSSCCCC
T ss_pred Ccc-----cCCcCcCCEEECCCCccccccc----cCCcCCEEECCCC-cccccc-c---hhhhccEEECCCCCCCcCCCC
Confidence 753 233 589999999998886422 2588999999999 666432 2 47899999999999887 44
Q ss_pred hhhhccC-------------ccccccccccccccH
Q 011708 438 LRHLKPL-------------KNLRSLTLESCKVTA 459 (479)
Q Consensus 438 ~~~l~~~-------------~~L~~L~l~~~~l~~ 459 (479)
+..+..+ ++|++|++++|+++.
T Consensus 376 p~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 376 PESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CTTCCEEECCC------------------------
T ss_pred hHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 5566555 789999999998875
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=2.2e-27 Score=216.86 Aligned_cols=290 Identities=17% Similarity=0.183 Sum_probs=145.7
Q ss_pred CCcEEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEe
Q 011708 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (479)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 211 (479)
++++++++++. +...+..+ .++|++|+++++. +....+..+.++++|++|+++++.++...+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCC-ccccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 45566655532 22222222 2455555555532 33333344555555555555555555444444555555555555
Q ss_pred cCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChH
Q 011708 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291 (479)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 291 (479)
++|.+..... .+ .++|++|++++|.+....+..+..+++|+.|++++|.+... ..
T Consensus 110 ~~n~l~~l~~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~ 164 (332)
T 2ft3_A 110 SKNHLVEIPP-NL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF 164 (332)
T ss_dssp CSSCCCSCCS-SC--CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred CCCcCCccCc-cc--cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence 5554432111 11 13455555555444443333344444444444444443310 01
Q ss_pred HHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcC
Q 011708 292 GLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371 (479)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 371 (479)
.+..+..+ +|+.|++++|.++.... ...++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTGIPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSSCCS---SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CcccccCC-ccCEEECcCCCCCccCc---cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 12222223 45555555554433110 012456666666655555444445556666666666666655544455566
Q ss_pred CCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHc------CCCCceeecCCCccc--hhhhhhhcc
Q 011708 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG------LTGLVSLNVSNSRIT--SAGLRHLKP 443 (479)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~------l~~L~~L~l~~~~~~--~~~~~~l~~ 443 (479)
++|++|++++|.++.. +..+..+++|++|++++| .++......+.. .++|+.|++.+|++. ...+..+..
T Consensus 241 ~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 241 PTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp TTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCEEECCCCcCeec-ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 6666666666666543 333556666666666666 555444443332 356778888888776 445566777
Q ss_pred Ccccccccccccc
Q 011708 444 LKNLRSLTLESCK 456 (479)
Q Consensus 444 ~~~L~~L~l~~~~ 456 (479)
+++|+.+++++|+
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 8888888887764
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=4e-27 Score=215.07 Aligned_cols=287 Identities=19% Similarity=0.183 Sum_probs=232.2
Q ss_pred CCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecc
Q 011708 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260 (479)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 260 (479)
+++.++++++.++..+ .. -.+.++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 32 ~l~~l~~~~~~l~~lp-~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVP-KD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCC-CS--CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccC-cc--CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5666777666555322 11 23689999999998887766678899999999999999998878889999999999999
Q ss_pred cccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCH--HHHHHhhCCCCCceeecCCCCCCH
Q 011708 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD 338 (479)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~ 338 (479)
+|.+... +.. ..++|++|++++|.+.......+..+++|+.|++++|.+.. .....+..+++|++|++++|.+..
T Consensus 109 ~n~l~~l-~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKEL-PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSBC-CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCcc-Chh--hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 9988742 222 23799999999999988777889999999999999998864 344567789999999999998876
Q ss_pred HHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHH
Q 011708 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418 (479)
Q Consensus 339 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 418 (479)
.+.. ..++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++| .++ ..+..+.
T Consensus 186 l~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~lp~~l~ 260 (330)
T 1xku_A 186 IPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLV-KVPGGLA 260 (330)
T ss_dssp CCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCS-SCCTTTT
T ss_pred CCcc---ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCc-cCChhhc
Confidence 3321 2379999999999999877778899999999999999999887778889999999999999 676 4455678
Q ss_pred cCCCCceeecCCCccchhhhhhhcc------CccccccccccccccHHHHHHhhhCCCCccccCCC
Q 011708 419 GLTGLVSLNVSNSRITSAGLRHLKP------LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478 (479)
Q Consensus 419 ~l~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~~~l~~~~~~~~~~~~~p~L~~l~~ 478 (479)
.+++|++|++++|++...+...+.. .+.|+.|++++|++....+..-.-..+++++.+++
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L 326 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEe
Confidence 8999999999999999887766643 47899999999998765443323346777777765
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=1.2e-26 Score=212.01 Aligned_cols=287 Identities=18% Similarity=0.158 Sum_probs=187.0
Q ss_pred CCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEE
Q 011708 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186 (479)
Q Consensus 107 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 186 (479)
+++.++++++.. . ..|..+ .++|++|+++++......+..+.++++|++|+++++ .+....+..+.++++|++|+
T Consensus 34 ~l~~l~~~~~~l-~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGL-K-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCC-S-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCc-c-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEE
Confidence 689999998753 2 223333 379999999997654444557899999999999985 46666678889999999999
Q ss_pred ccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCCh--hhHHHHhcCCCCcEEecccccC
Q 011708 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD--DGCEKFSKIGSLKVLNLGFNEI 264 (479)
Q Consensus 187 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~ 264 (479)
+++|.+...... + .++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|.+
T Consensus 109 L~~n~l~~l~~~-~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLVEIPPN-L--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCCSCCSS-C--CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcCCccCcc-c--cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 999988753322 2 2799999999998887666668899999999999998864 334445555 888888888877
Q ss_pred ChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHH
Q 011708 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344 (479)
Q Consensus 265 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 344 (479)
... +.. ..++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+...+ ..+
T Consensus 185 ~~l-~~~--~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~~l 260 (332)
T 2ft3_A 185 TGI-PKD--LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGL 260 (332)
T ss_dssp SSC-CSS--SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC-TTG
T ss_pred Ccc-Ccc--ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC-hhh
Confidence 642 111 1256777777777666554455566666666666666665544444555666666666666555322 224
Q ss_pred hcCCCCCEEEccCCCCchhhHHHHhc------CCCCceeeccCCccC--hHHHHHHHccCCCCceeccCC
Q 011708 345 TSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLT--DAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~ 406 (479)
..+++|+.|++++|.++..+...+.. .+.|+.+++.+|.+. +..+..+..+++|+.+++++|
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 45566666666666555544333321 234555555555444 223334444455555555544
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.2e-27 Score=216.06 Aligned_cols=249 Identities=18% Similarity=0.220 Sum_probs=158.3
Q ss_pred CCCcEEEccCCccch--HhHHHhhcCCCCCEEEecC-CCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcE
Q 011708 180 TNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256 (479)
Q Consensus 180 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 256 (479)
.+++.|+++++.+.. ..+..+..+++|++|++++ +.+....+..+..+++|++|++++|.+....+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777665 4455666777777777764 5554444455666666666666666665444555556666666
Q ss_pred EecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCC-CCceeecCCCC
Q 011708 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQ 335 (479)
Q Consensus 257 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~ 335 (479)
|++++|.+....+..+..+++|++|++++|.+... .+..+..++ +|++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~------------------------~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA------------------------IPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE------------------------CCGGGGCCCTTCCEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc------------------------CCHHHhhhhhcCcEEECcCCe
Confidence 66666555444444444555555555555544433 333344444 55555555555
Q ss_pred CCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHH
Q 011708 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415 (479)
Q Consensus 336 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 415 (479)
+....+..+..++ |+.|++++|.++...+..+..+++|+.|++++|.+++..+. +..+++|++|++++| .++...+.
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~ 262 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN-RIYGTLPQ 262 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS-CCEECCCG
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC-cccCcCCh
Confidence 4433334444554 77777777776665566666777777777777777654333 556778888888888 66656667
Q ss_pred HHHcCCCCceeecCCCccchhhhhhhccCcccccccccccc
Q 011708 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456 (479)
Q Consensus 416 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 456 (479)
.+..+++|+.|++++|++....+.. ..+++|+.+++++|+
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 7788888888888888887655544 678888888888886
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2e-26 Score=208.01 Aligned_cols=249 Identities=16% Similarity=0.103 Sum_probs=172.0
Q ss_pred CCccEEEecCCCCCh--hhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCc
Q 011708 57 SSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (479)
.++++|+++++.+++ ..+..+.++++|++|++++++.+....+..+..+++|++|++++|. +....|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCCCCC
Confidence 579999999999887 6677889999999999986455666667778889999999999884 4555677788889999
Q ss_pred EEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCC-CCcEEEccCCccchHhHHHhhcCCCCCEEEecC
Q 011708 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (479)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (479)
+|++++|......+..+..+++|++|+++++. +.+..+..+..++ +|++|++++|.++...+..+..++ |+.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 99998865544566677888888888888743 4444556667776 788888888877765566666665 77777777
Q ss_pred CCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHH
Q 011708 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293 (479)
Q Consensus 214 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 293 (479)
|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 766555555566677777777777766544332 4555666666666666654445555556666666666665543322
Q ss_pred HHhhCCCCCCeeeccCC
Q 011708 294 VNLTGLTNLESINLSFT 310 (479)
Q Consensus 294 ~~~~~~~~L~~L~l~~~ 310 (479)
.. ..+++|+.+++.+|
T Consensus 286 ~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CS-TTGGGSCGGGTCSS
T ss_pred CC-ccccccChHHhcCC
Confidence 21 34445555555544
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=6.9e-26 Score=208.79 Aligned_cols=254 Identities=22% Similarity=0.207 Sum_probs=153.0
Q ss_pred CCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEec
Q 011708 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (479)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 259 (479)
++|++|+++++.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 57888888888887665556778888888888888777665556777788888888888777766666777788888888
Q ss_pred ccccCChHHH-HHhcCCCCccEEeccCC-CCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCC
Q 011708 260 GFNEITDECL-VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337 (479)
Q Consensus 260 ~~~~~~~~~~-~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (479)
++|.+..... ..+..+++|++|++++| .+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 8777664322 24566777777777776 344444445566667777777766666544555566666666666666665
Q ss_pred HHHHHHHhcCCCCCEEEccCCCCchhhHHHH---hcCCCCceeeccCCccChHH----HHHHHccCCCCceeccCCCCCC
Q 011708 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTDAG----VKHIKDLSSLTLLNLSQNCNLT 410 (479)
Q Consensus 338 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~ 410 (479)
......+..+++|+.|++++|.++......+ ...+.++.+++.++.+.+.. +..+..+++|++|++++| .++
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~ 290 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLK 290 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCC
Confidence 5554444456666666666666554322111 22344455555554444421 223334444555555444 343
Q ss_pred HHHHHHHHcCCCCceeecCCCccc
Q 011708 411 DKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 411 ~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
......+.++++|++|++++|++.
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 222222344444444444444433
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=7.9e-24 Score=195.03 Aligned_cols=252 Identities=22% Similarity=0.182 Sum_probs=163.1
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|++++++++......+.++++|++|+++++ .++......+..+++|++|++++|. ++...+..+.++++|++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEE
Confidence 57888888888888766667888888888888884 5666666778888888888888874 455555668888888888
Q ss_pred ecccccccccccc--cccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCC
Q 011708 137 DLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (479)
Q Consensus 137 ~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 214 (479)
++++|... ..+. .+.++++|++|+++++..+....+..+..+++|++|+++++.+....+..+..+++|++|++++|
T Consensus 130 ~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 130 NLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp ECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred ECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 88886433 3333 57778888888888765566555566777888888888888777666667777788888888887
Q ss_pred CCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHH---hcCCCCcEEecccccCChH----HHHHhcCCCCccEEeccCCC
Q 011708 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVLNLGFNEITDE----CLVHLKGLTNLESLNLDSCG 287 (479)
Q Consensus 215 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~ 287 (479)
.+.......+..+++|+.|++++|.+.......+ .....++.++++++.+.+. .+..+..+++|+.|++++|.
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 7765555455567778888887776654322211 2234455555555544432 22233444445555554444
Q ss_pred CChHHHHHhhCCCCCCeeeccCCC
Q 011708 288 IGDEGLVNLTGLTNLESINLSFTG 311 (479)
Q Consensus 288 ~~~~~~~~~~~~~~L~~L~l~~~~ 311 (479)
+.......+..+++|+.|++++|.
T Consensus 289 l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHHHHhcCCCCCEEEeeCCC
Confidence 442222222344444444444443
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=1.5e-23 Score=198.61 Aligned_cols=344 Identities=17% Similarity=0.099 Sum_probs=205.1
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCC-CCCcE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL-INLVK 135 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~ 135 (479)
.++++|+++++++++... ..++|+.|+++++ .++.. +. .+++|++|++++|.. .. +... ++|++
T Consensus 71 ~~l~~L~l~~~~l~~lp~----~~~~L~~L~l~~n-~l~~l-p~---~~~~L~~L~l~~n~l-~~-----l~~~~~~L~~ 135 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPE----LPPHLESLVASCN-SLTEL-PE---LPQSLKSLLVDNNNL-KA-----LSDLPPLLEY 135 (454)
T ss_dssp HTCSEEECTTSCCSCCCS----CCTTCSEEECCSS-CCSSC-CC---CCTTCCEEECCSSCC-SC-----CCSCCTTCCE
T ss_pred cCCCEEEecCCccccCCC----CcCCCCEEEccCC-cCCcc-cc---ccCCCcEEECCCCcc-Cc-----ccCCCCCCCE
Confidence 357888888887765322 2368888888874 44442 21 247888888888743 22 1222 58888
Q ss_pred EecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCC
Q 011708 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (479)
|++++|.. ...+ .+.++++|++|+++++. +.. .+. ..++|++|++++|.++... .++.+++|++|++++|.
T Consensus 136 L~L~~n~l-~~lp-~~~~l~~L~~L~l~~N~-l~~-lp~---~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 136 LGVSNNQL-EKLP-ELQNSSFLKIIDVDNNS-LKK-LPD---LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp EECCSSCC-SSCC-CCTTCTTCCEEECCSSC-CSC-CCC---CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSC
T ss_pred EECcCCCC-CCCc-ccCCCCCCCEEECCCCc-Ccc-cCC---CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCc
Confidence 88888643 3333 57888888888888754 332 111 2358888888888777632 57788888888888887
Q ss_pred CCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHH
Q 011708 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (479)
+... + ...++|++|++++|.+.... .+..+++|+.|++++|.+... + ..+++|+.|++++|.+....
T Consensus 207 l~~l-~---~~~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l-~---~~~~~L~~L~l~~N~l~~l~--- 273 (454)
T 1jl5_A 207 LKKL-P---DLPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLTDLP--- 273 (454)
T ss_dssp CSSC-C---CCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCSCCC---
T ss_pred CCcC-C---CCcCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcc-c---ccccccCEEECCCCcccccC---
Confidence 6542 1 12357888888888777433 377788888888888877642 1 13478888888888766421
Q ss_pred hhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcC-CCCCEEEccCCCCchhhHHHHhcCCCC
Q 011708 296 LTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNL 374 (479)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L 374 (479)
..+++|+.|++++|.++... ...++|+.|++++|.+.. +..+ ++|+.|++++|+++..+. .+++|
T Consensus 274 -~~~~~L~~L~ls~N~l~~l~----~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~lp~----~~~~L 339 (454)
T 1jl5_A 274 -ELPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIELPA----LPPRL 339 (454)
T ss_dssp -CCCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSCCCC----CCTTC
T ss_pred -cccCcCCEEECcCCccCccc----CcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCccccccc----cCCcC
Confidence 12477888888888776521 123678888888887765 2233 478888888888775322 35788
Q ss_pred ceeeccCCccChHHHHHHHccCCCCceeccCCCCCCH--HHHHHHHcC-------------CCCceeecCCCccchhhhh
Q 011708 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--KTLELISGL-------------TGLVSLNVSNSRITSAGLR 439 (479)
Q Consensus 375 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~l-------------~~L~~L~l~~~~~~~~~~~ 439 (479)
++|++++|.++.... .+++|++|++++| .++. ..+..+..+ ++|+.|++++|++...+.
T Consensus 340 ~~L~L~~N~l~~lp~----~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~- 413 (454)
T 1jl5_A 340 ERLIASFNHLAEVPE----LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD- 413 (454)
T ss_dssp CEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC----------------------------
T ss_pred CEEECCCCccccccc----hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcccc-
Confidence 888888888876433 3678888888888 5554 334444444 789999999999876321
Q ss_pred hhccCccccccccccccccHH
Q 011708 440 HLKPLKNLRSLTLESCKVTAN 460 (479)
Q Consensus 440 ~l~~~~~L~~L~l~~~~l~~~ 460 (479)
+ .++++.|.+.+|.+...
T Consensus 414 -i--P~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 414 -I--PESVEDLRMNSERVVDP 431 (454)
T ss_dssp ---------------------
T ss_pred -c--hhhHhheeCcCcccCCc
Confidence 1 24678888888876543
No 55
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.1e-22 Score=189.89 Aligned_cols=257 Identities=20% Similarity=0.220 Sum_probs=182.0
Q ss_pred HHhhcCCCCCEEEecCCCCCHHHHHH----HhCCCCCCEEEccCCCCC---hhhHH-------HHhcCCCCcEEeccccc
Q 011708 198 AYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDGCE-------KFSKIGSLKVLNLGFNE 263 (479)
Q Consensus 198 ~~l~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~---~~~~~-------~~~~~~~L~~L~l~~~~ 263 (479)
..+..+++|++|++++|.+....+.. +..+++|++|++++|.+. ...+. .+..+++|+.|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 45677889999999999887765444 557899999999987544 22222 34678899999999988
Q ss_pred CCh----HHHHHhcCCCCccEEeccCCCCChHHHHHhhC----C---------CCCCeeeccCCCCCHHHHH----HhhC
Q 011708 264 ITD----ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG----L---------TNLESINLSFTGISDGSLR----KLAG 322 (479)
Q Consensus 264 ~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~---------~~L~~L~l~~~~~~~~~~~----~l~~ 322 (479)
+.. ..+..+..+++|++|++++|.++...+..+.. + ++|++|++++|.++..... .+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 876 35556778889999999998887555444433 3 7888888888888743333 4557
Q ss_pred CCCCceeecCCCCCCHHHH----H-HHhcCCCCCEEEccCCCCch----hhHHHHhcCCCCceeeccCCccChHHHH---
Q 011708 323 LSSLKSLNLDARQITDTGL----A-ALTSLTGLTHLDLFGARITD----SGAAYLRNFKNLRSLEICGGGLTDAGVK--- 390 (479)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~----~-~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~--- 390 (479)
+++|++|++++|.+...+. . .+..+++|+.|++++|.++. ..+..+..+++|++|++++|.+++....
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 7888888888888876542 2 45577888888888888763 3345567788888888888888776433
Q ss_pred -HHHc--cCCCCceeccCCCCCCH----HHHHHH-HcCCCCceeecCCCccchhhh--hhh-ccCccccccccccc
Q 011708 391 -HIKD--LSSLTLLNLSQNCNLTD----KTLELI-SGLTGLVSLNVSNSRITSAGL--RHL-KPLKNLRSLTLESC 455 (479)
Q Consensus 391 -~~~~--~~~L~~L~l~~~~~~~~----~~~~~l-~~l~~L~~L~l~~~~~~~~~~--~~l-~~~~~L~~L~l~~~ 455 (479)
.+.. +++|++|++++| .++. ..+..+ .++++|+.|++++|++...++ ..+ ..+++++.+++...
T Consensus 266 ~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 3322 788888888888 6776 355555 567888888888888777652 333 33556655555443
No 56
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=3e-22 Score=186.83 Aligned_cols=258 Identities=17% Similarity=0.172 Sum_probs=188.8
Q ss_pred cccccCCCCCcEEEccCCccchHhHHH----hhcCCCCCEEEecCCCCC---HHHH-------HHHhCCCCCCEEEccCC
Q 011708 173 MKPLSGLTNLKSLQISCSKVTDSGIAY----LKGLQKLTLLNLEGCPVT---AACL-------DSLSALGSLFYLNLNRC 238 (479)
Q Consensus 173 ~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~---~~~~-------~~l~~~~~L~~L~l~~~ 238 (479)
...+..+++|++|++++|.+....+.. +..+++|++|++++|.+. ...+ ..+..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 345667889999999999888765544 567899999999987432 2222 23468899999999999
Q ss_pred CCCh----hhHHHHhcCCCCcEEecccccCChHHHHHhc----CC---------CCccEEeccCCCCChHHH----HHhh
Q 011708 239 QLSD----DGCEKFSKIGSLKVLNLGFNEITDECLVHLK----GL---------TNLESLNLDSCGIGDEGL----VNLT 297 (479)
Q Consensus 239 ~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~~---------~~L~~L~l~~~~~~~~~~----~~~~ 297 (479)
.+.. ..+..+..+++|+.|++++|.+....+..+. .+ ++|++|++++|.++.... ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 8887 3556778899999999999988655444333 33 899999999998874333 3566
Q ss_pred CCCCCCeeeccCCCCCHHH----HH-HhhCCCCCceeecCCCCCCHHH----HHHHhcCCCCCEEEccCCCCchhhH---
Q 011708 298 GLTNLESINLSFTGISDGS----LR-KLAGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDLFGARITDSGA--- 365 (479)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~~----~~-~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~--- 365 (479)
.+++|+.|++++|.++... .. .+..+++|++|++++|.++..+ +..+..+++|+.|++++|.++..+.
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 7889999999999888543 22 5667899999999999987433 3456688999999999999887643
Q ss_pred -HHHhc--CCCCceeeccCCccChH----HHHHH-HccCCCCceeccCCCCCCHHHH--HHH-HcCCCCceeecCCC
Q 011708 366 -AYLRN--FKNLRSLEICGGGLTDA----GVKHI-KDLSSLTLLNLSQNCNLTDKTL--ELI-SGLTGLVSLNVSNS 431 (479)
Q Consensus 366 -~~~~~--~~~L~~L~l~~~~~~~~----~~~~~-~~~~~L~~L~l~~~~~~~~~~~--~~l-~~l~~L~~L~l~~~ 431 (479)
..+.. +++|++|++++|.++.. .+..+ .++++|++|++++| .++...+ ..+ ..++.++.+++...
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 33433 89999999999999883 44444 55799999999999 5665442 222 33455555555443
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=2.5e-24 Score=192.21 Aligned_cols=203 Identities=19% Similarity=0.247 Sum_probs=113.1
Q ss_pred CCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCC-CChhhHHHHhcCCCCcEEe
Q 011708 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLN 258 (479)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 258 (479)
++|++|+++++.++......+..+++|++|+++++.+....+..+..+++|++|++++|. +....+..+..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 567777777766665554555666666666666665555444455555666666666654 4444344444555555555
Q ss_pred cccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCH
Q 011708 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338 (479)
Q Consensus 259 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (479)
+++|.+....+..+.. +++|++|++++|.++......+..+++|++|++++|.++.
T Consensus 112 l~~n~l~~~~~~~~~~------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRG------------------------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CTTSCCCCCCTTTTTT------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhC------------------------CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 5555444333333344 4444444444444443333334445555555555555554
Q ss_pred HHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCC
Q 011708 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 339 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (479)
.....+..+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 44344555566666666666665554555556666666666666666655555666666666666666
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=5.2e-25 Score=199.44 Aligned_cols=237 Identities=19% Similarity=0.185 Sum_probs=104.2
Q ss_pred CCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEE
Q 011708 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257 (479)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 257 (479)
.+++|++|+++++.++...+..+..+++|++|++++|.+....+ +..+++|++|++++|.+... ...++|+.|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEE
Confidence 34455555555555554444455555555555555554443221 44455555555555544322 123455555
Q ss_pred ecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhh-CCCCCceeecCCCCC
Q 011708 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQI 336 (479)
Q Consensus 258 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~ 336 (479)
++++|.+....+ ..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+. .+++|++|++++|.+
T Consensus 105 ~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 555554443211 1234455555555544443333344444455555544444433222222 344444444444444
Q ss_pred CHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCC-HHHHH
Q 011708 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DKTLE 415 (479)
Q Consensus 337 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~ 415 (479)
+... ....+++|+.|++++|.++..++. +..+++|+.|++++|.++.. +..+..+++|+.|++++| .+. ...+.
T Consensus 182 ~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N-~~~~~~~~~ 256 (317)
T 3o53_A 182 YDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN-GFHCGTLRD 256 (317)
T ss_dssp CEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC-CCBHHHHHH
T ss_pred cccc--cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCCCCEEEccCC-CccCcCHHH
Confidence 3321 111234444444444444433222 33444444444444444432 222333444444444444 233 33333
Q ss_pred HHHcCCCCceeecC
Q 011708 416 LISGLTGLVSLNVS 429 (479)
Q Consensus 416 ~l~~l~~L~~L~l~ 429 (479)
.+..++.|+.|++.
T Consensus 257 ~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 257 FFSKNQRVQTVAKQ 270 (317)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhccccceEEECC
Confidence 44444444444444
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=2.9e-24 Score=204.65 Aligned_cols=228 Identities=25% Similarity=0.253 Sum_probs=176.8
Q ss_pred CCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEec
Q 011708 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283 (479)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 283 (479)
++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57899999999888776777888999999999999888877778888899999999998887665566778888999999
Q ss_pred cCCCCChHHHHHhhCCCCCCeeeccCC-CCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCch
Q 011708 284 DSCGIGDEGLVNLTGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362 (479)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 362 (479)
++|.+.......+..+++|+.|+++++ .+.......+..+++|++|++++|.+.... .+..+++|+.|++++|.++.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcc
Confidence 988887666666778888888888874 444444445667788888888888776532 35567788888888888777
Q ss_pred hhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccc
Q 011708 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
..+..+..+++|+.|++++|.+....+..+..+++|+.|++++| .++......+..+++|+.|++++|++.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCcC
Confidence 76777777888888888888877776667777788888888887 666655556667777888888877653
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=2.9e-24 Score=203.95 Aligned_cols=228 Identities=24% Similarity=0.256 Sum_probs=184.4
Q ss_pred CCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEec
Q 011708 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283 (479)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 283 (479)
++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+.......+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57899999999888776677889999999999999998887788889999999999999887665556788899999999
Q ss_pred cCCCCChHHHHHhhCCCCCCeeeccCC-CCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCch
Q 011708 284 DSCGIGDEGLVNLTGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362 (479)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 362 (479)
++|.+.......+..+++|+.|+++++ .+.......+..+++|++|++++|.++..+ .+..+++|+.|++++|.++.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCc
Confidence 999888766667788899999999874 444444445677888888888888877543 35677888888888888887
Q ss_pred hhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccc
Q 011708 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
..+..+..+++|+.|++++|.++...+..+..+++|+.|++++| .++...+..+..+++|+.|++++|++.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCcc
Confidence 76777788888888888888888777777777888888888888 677666666777888888888888753
No 61
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=5.3e-22 Score=181.82 Aligned_cols=221 Identities=16% Similarity=0.205 Sum_probs=99.9
Q ss_pred CcEEEccCCccchHhHHHhhcC--CCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChh-hHHHHhcCCCCcEEe
Q 011708 182 LKSLQISCSKVTDSGIAYLKGL--QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLN 258 (479)
Q Consensus 182 L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ 258 (479)
++.++++++.+.. ..+..+ ++++.|+++++.+....+. +..+++|++|++++|.+... .+..+..+++|+.|+
T Consensus 49 ~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 5566666655542 223333 4566666655543332211 23445555555555554433 334444555555555
Q ss_pred cccccCChHHHHHhcCCCCccEEeccCC-CCChH-HHHHhhCCCCCCeeeccCC-CCCHHH-HHHhhCCC-CCceeecCC
Q 011708 259 LGFNEITDECLVHLKGLTNLESLNLDSC-GIGDE-GLVNLTGLTNLESINLSFT-GISDGS-LRKLAGLS-SLKSLNLDA 333 (479)
Q Consensus 259 l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~-~~~l~~~~-~L~~L~l~~ 333 (479)
+++|.+....+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++.. ...+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 5555555444444555555555555555 34432 2222444455555555555 444331 22233444 555555544
Q ss_pred C--CCCHHH-HHHHhcCCCCCEEEccCCC-CchhhHHHHhcCCCCceeeccCC-ccChHHHHHHHccCCCCceeccCC
Q 011708 334 R--QITDTG-LAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 334 ~--~~~~~~-~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~ 406 (479)
| .+++.. +..+..+++|+.|++++|. +++..+..+..+++|++|++++| .+.......+..+++|+.|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 4 333221 1223344445555554444 33333333444444444444444 222222223344444444444444
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=2.7e-24 Score=192.00 Aligned_cols=207 Identities=23% Similarity=0.284 Sum_probs=159.0
Q ss_pred CCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCC-CChHHHHHhhCCCCCCeee
Q 011708 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLTNLESIN 306 (479)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 306 (479)
+++++|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 355555555555555444455556666666666665554444455666677777777665 5544455566778888888
Q ss_pred ccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccCh
Q 011708 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386 (479)
Q Consensus 307 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 386 (479)
+++|.++...+..+..+++|++|++++|.+.......+..+++|+.|++++|.++..+...+..+++|++|++++|.+.+
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 88887776555667889999999999999887666667889999999999999988777678889999999999999998
Q ss_pred HHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccch
Q 011708 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 387 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 435 (479)
..+..+..+++|+.|++++| .++...+..+..+++|+.|++++|++..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCccC
Confidence 87788888999999999999 7887777888999999999999998754
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1.2e-24 Score=196.40 Aligned_cols=248 Identities=22% Similarity=0.242 Sum_probs=162.1
Q ss_pred cEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhh--HHHHhcCCCCcEEecc
Q 011708 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG--CEKFSKIGSLKVLNLG 260 (479)
Q Consensus 183 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~ 260 (479)
+.++.++..++..+. ...++|++|+++++.+.......+..+++|++|++++|.+.... +..+..+++|+.|+++
T Consensus 10 ~~l~c~~~~l~~ip~---~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCS---CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCC---CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 356666655553321 22357888888888777654445678888888888888776442 3455567888888888
Q ss_pred cccCChHHHHHhcCCCCccEEeccCCCCChHHH-HHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCH-
Q 011708 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD- 338 (479)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~- 338 (479)
+|.+.. .+..+..+++|++|++++|.+..... ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+..
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 887653 23336677888888888876654333 346667777777777776665444556667777777777776654
Q ss_pred HHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHH
Q 011708 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418 (479)
Q Consensus 339 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 418 (479)
..+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+++.....+..+++|++|++++| .+....+..+.
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 244 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ 244 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CCcccCHHHHH
Confidence 22334556677777777777776655556666677777777777766655555666677777777776 55555555555
Q ss_pred cCC-CCceeecCCCccch
Q 011708 419 GLT-GLVSLNVSNSRITS 435 (479)
Q Consensus 419 ~l~-~L~~L~l~~~~~~~ 435 (479)
.++ +|+.|++++|++..
T Consensus 245 ~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCTTCCEEECTTCCEEC
T ss_pred hhhccCCEEEccCCCeec
Confidence 553 67777777766543
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=5.4e-23 Score=195.91 Aligned_cols=226 Identities=22% Similarity=0.173 Sum_probs=120.5
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
++++.|+++++.++...+..|.++++|+.|+++++ .+.......+..+++|++|++++|. +....+..+.++++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEE
Confidence 45666666666666555555666666666666663 4555445555566666666666653 333334445556666666
Q ss_pred ecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCC
Q 011708 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 216 (479)
++++|.........+.++++|++|++++++.+.......+..+++|++|++++|.++.. ..+..+++|+.|++++|.+
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcC
Confidence 66654433222334555666666666655555444444455556666666665555432 2344455555555555555
Q ss_pred CHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCC
Q 011708 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 286 (479)
....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 5444444555555555555555555444444555555555555555544333333444455555555544
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=5.8e-23 Score=195.01 Aligned_cols=226 Identities=22% Similarity=0.209 Sum_probs=121.8
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
++++.|++++++++......|.++++|++|+++++ .+.......+..+++|++|++++|. ++...+..+..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCcee
Confidence 45666666666666555555666666666666663 4555555556666666666666653 333333445566666666
Q ss_pred ecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCC
Q 011708 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 216 (479)
++++|.........+.++++|++|++++++.+.......+.++++|++|++++|.++... .+..+++|+.|++++|.+
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCcc
Confidence 666644332233345556666666666555554444445555666666666665555321 244555555555555555
Q ss_pred CHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCC
Q 011708 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 286 (479)
....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 4444444555555555555555555544444555555555555555554433333444455555555544
No 66
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=7.1e-22 Score=180.95 Aligned_cols=250 Identities=22% Similarity=0.235 Sum_probs=197.9
Q ss_pred CCCCEEEecCCCCCHHHHHHHhCC--CCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChH-HHHHhcCCCCccE
Q 011708 204 QKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLES 280 (479)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~ 280 (479)
..++.++++++.+... .+..+ ++++.++++++.+....+. +..+++|+.|++++|.+... .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~~~---~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPD---VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCCHH---HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCCHH---HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3588999999877743 34444 7899999999887765433 45688999999999988766 6667888999999
Q ss_pred EeccCCCCChHHHHHhhCCCCCCeeeccCC-CCCHH-HHHHhhCCCCCceeecCCC-CCCHHH-HHHHhcCC-CCCEEEc
Q 011708 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFT-GISDG-SLRKLAGLSSLKSLNLDAR-QITDTG-LAALTSLT-GLTHLDL 355 (479)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~~-~~~l~~~~-~L~~L~l 355 (479)
|++++|.+++..+..++.+++|++|++++| .+++. ....+..+++|++|++++| .+++.. ...+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999998888888889999999999999 78764 3444778999999999999 888764 45567889 9999999
Q ss_pred cCC--CCch-hhHHHHhcCCCCceeeccCCc-cChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCC
Q 011708 356 FGA--RITD-SGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431 (479)
Q Consensus 356 ~~~--~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 431 (479)
++| .+++ ..+..+..+++|++|++++|. +++..+..+..+++|++|++++|..+.......+.++++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999 5553 334556789999999999998 777767788889999999999997666665566788999999999999
Q ss_pred ccchhhhhhhccCccccccccccccccHH
Q 011708 432 RITSAGLRHLKPLKNLRSLTLESCKVTAN 460 (479)
Q Consensus 432 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 460 (479)
+.+.+...+. ..+..|++++|.++..
T Consensus 283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 283 -VPDGTLQLLK--EALPHLQINCSHFTTI 308 (336)
T ss_dssp -SCTTCHHHHH--HHSTTSEESCCCSCCT
T ss_pred -cCHHHHHHHH--hhCcceEEecccCccc
Confidence 5554444332 3467777888887754
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=2.1e-24 Score=195.48 Aligned_cols=261 Identities=18% Similarity=0.196 Sum_probs=208.7
Q ss_pred CCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecc
Q 011708 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260 (479)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 260 (479)
.++..+++.+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+ +..+++|+.|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555666666665555566777899999999999888777889999999999999998876543 7888999999999
Q ss_pred cccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHH
Q 011708 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340 (479)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 340 (479)
+|.+.. +...++|++|++++|.+..... ..+++|+.|++++|.++......+..+++|++|++++|.+....
T Consensus 89 ~n~l~~-----l~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQE-----LLVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEE-----EEECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcccc-----ccCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 998764 3345899999999998876432 34688999999999888766666778899999999999988766
Q ss_pred HHHH-hcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHc
Q 011708 341 LAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419 (479)
Q Consensus 341 ~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 419 (479)
+..+ ..+++|+.|++++|.++.... ...+++|++|++++|.+++..+. +..+++|++|++++| .++. .+..+..
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N-~l~~-l~~~~~~ 235 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVL-IEKALRF 235 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCE-ECTTCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCC-cccc-hhhHhhc
Confidence 5555 468899999999998886532 23578999999999999876444 778899999999999 6774 4555778
Q ss_pred CCCCceeecCCCccc-hhhhhhhccCcccccccccccc
Q 011708 420 LTGLVSLNVSNSRIT-SAGLRHLKPLKNLRSLTLESCK 456 (479)
Q Consensus 420 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~ 456 (479)
+++|+.|++++|++. ...+..+..+++|+.+++++++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 899999999999988 5566777888999999887664
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=8.3e-23 Score=184.37 Aligned_cols=245 Identities=23% Similarity=0.256 Sum_probs=132.3
Q ss_pred cEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChh--HHHHHhCCCCCcEEe
Q 011708 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ--GMKAFAGLINLVKLD 137 (479)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~ 137 (479)
+.++.++..++.... .-.++|++|+++++ .++......+..+++|++|++++|. +... .+..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~~ip~---~~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT---GIPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSCCS---CCCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcccCCC---CCCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEE
Confidence 456666655543321 12257777777774 4555555556777777777777764 2221 134555677777777
Q ss_pred cccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCC
Q 011708 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217 (479)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 217 (479)
+++|. +...+..+..+++|++|+++++..........+..+++|++|+++++.+....+..+..+++|++|++++|.+.
T Consensus 85 Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 77753 33344456667777777777643222111244566677777777766665554455566666666666666554
Q ss_pred H-HHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHh
Q 011708 218 A-ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296 (479)
Q Consensus 218 ~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 296 (479)
. ..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 3 223344555566666666665555444445555555555555555443333233444445555554444443333333
Q ss_pred hCCC-CCCeeeccCC
Q 011708 297 TGLT-NLESINLSFT 310 (479)
Q Consensus 297 ~~~~-~L~~L~l~~~ 310 (479)
..++ +|+.|++++|
T Consensus 244 ~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 244 QHFPSSLAFLNLTQN 258 (306)
T ss_dssp CCCCTTCCEEECTTC
T ss_pred HhhhccCCEEEccCC
Confidence 3332 3444444433
No 69
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=4.6e-22 Score=183.61 Aligned_cols=255 Identities=16% Similarity=0.220 Sum_probs=178.9
Q ss_pred EEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHH----HHHhCCC-CCCEEEccCCCCChhhHHHHhcC-----CC
Q 011708 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL----DSLSALG-SLFYLNLNRCQLSDDGCEKFSKI-----GS 253 (479)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~ 253 (479)
.+.++.+.+++..+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+....+..+... ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677788887777766777779999999998766554 6677888 89999999998887766666553 88
Q ss_pred CcEEecccccCChHHHHH----hcCC-CCccEEeccCCCCChHHHHHh----hC-CCCCCeeeccCCCCCHHH----HHH
Q 011708 254 LKVLNLGFNEITDECLVH----LKGL-TNLESLNLDSCGIGDEGLVNL----TG-LTNLESINLSFTGISDGS----LRK 319 (479)
Q Consensus 254 L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~----~~~ 319 (479)
|+.|++++|.+....+.. +..+ ++|++|++++|.+++.....+ .. .++|++|++++|.+++.. ...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999998877654443 4444 789999999988776555443 33 358899999888777433 333
Q ss_pred hhCCC-CCceeecCCCCCCHHHHHH----HhcC-CCCCEEEccCCCCchhhH----HHHhc-CCCCceeeccCCccChHH
Q 011708 320 LAGLS-SLKSLNLDARQITDTGLAA----LTSL-TGLTHLDLFGARITDSGA----AYLRN-FKNLRSLEICGGGLTDAG 388 (479)
Q Consensus 320 l~~~~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~----~~~~~-~~~L~~L~l~~~~~~~~~ 388 (479)
+..++ +|++|++++|.++..+... +..+ ++|+.|++++|.++..+. ..+.. .++|++|++++|.+.+.+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 8888888888887665543 3445 488888888888876332 23333 458888888888887754
Q ss_pred HHH----HHccCCCCceeccCCC--CCCHHHHHH----HHcCCCCceeecCCCccchhhh
Q 011708 389 VKH----IKDLSSLTLLNLSQNC--NLTDKTLEL----ISGLTGLVSLNVSNSRITSAGL 438 (479)
Q Consensus 389 ~~~----~~~~~~L~~L~l~~~~--~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~ 438 (479)
... +..+++|++|++++|. .++...... +..+++|+.|++++|++....+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 433 3446788888888882 244433332 3456778888888888766533
No 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.8e-22 Score=181.94 Aligned_cols=222 Identities=20% Similarity=0.205 Sum_probs=122.4
Q ss_pred CCCCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCc
Q 011708 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (479)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (479)
..++++.|+++++.++. .+..+.++++|++|+++++ .+. ..+..++.+++|++|++++|.. . ..|..+.++++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l-~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPL-R-ALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCC-C-CCCGGGGGCTTCC
T ss_pred cccceeEEEccCCCchh-cChhhhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCcc-c-cCcHHHhcCcCCC
Confidence 35788888998888873 3455677888888888885 455 3455677888888888888753 3 4466788888888
Q ss_pred EEecccccccccccccccC---------CcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCC
Q 011708 135 KLDLERCTRIHGGLVNLKG---------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205 (479)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 205 (479)
+|++++|......+..+.. +++|++|+++++. +. ..+..+.++++|++|++++|.++.. +..+..+++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~ 230 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPK 230 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTT
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC-cchHhhcCCCCCCEEEccCCCCCcC-chhhccCCC
Confidence 8888876655555444332 5555555555432 22 2233344455555555555544432 123444444
Q ss_pred CCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEecc
Q 011708 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284 (479)
Q Consensus 206 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 284 (479)
|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....|..+..+++|+.+.+.
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 5555554444433333334444444444444444433333334444444444444444433333444444444444443
No 71
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=1.7e-23 Score=190.00 Aligned_cols=132 Identities=18% Similarity=0.119 Sum_probs=76.5
Q ss_pred CCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCcee
Q 011708 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402 (479)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 402 (479)
+++|++|++++|.++.. +..+..+++|+.|++++|.++..+. .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 182 l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 44555555555444421 2234455566666666665554322 355566666666666655555455555666666666
Q ss_pred ccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccc
Q 011708 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457 (479)
Q Consensus 403 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 457 (479)
+++| .+....+..+.++++|+.|++++|++....+..+..+++|+.+.+..+.+
T Consensus 260 L~~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 260 LKDC-SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CTTC-TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCCC-CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 6666 34444455566667777777777766666666677777777777666543
No 72
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=3.1e-21 Score=178.05 Aligned_cols=251 Identities=18% Similarity=0.200 Sum_probs=193.6
Q ss_pred EEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhH----HHHhcCC-CCcEEecccccCChHHHHHhcC----C-CCc
Q 011708 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIG-SLKVLNLGFNEITDECLVHLKG----L-TNL 278 (479)
Q Consensus 209 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~----~-~~L 278 (479)
+.++.+.+....+..+...++|++|++++|.+..... ..+..++ +|+.|++++|.+....+..+.. . ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677888887777777777789999999999988776 6777888 8999999999988765555443 2 899
Q ss_pred cEEeccCCCCChHHHHH----hhCC-CCCCeeeccCCCCCHHHHHHhh----C-CCCCceeecCCCCCCHHHHHH----H
Q 011708 279 ESLNLDSCGIGDEGLVN----LTGL-TNLESINLSFTGISDGSLRKLA----G-LSSLKSLNLDARQITDTGLAA----L 344 (479)
Q Consensus 279 ~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~l~----~-~~~L~~L~l~~~~~~~~~~~~----l 344 (479)
++|++++|.+++..+.. +..+ ++|+.|++++|.+++.....+. . +++|++|++++|.+.+.+... +
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999887655443 4455 8999999999988766555443 4 469999999999988654433 3
Q ss_pred hcCC-CCCEEEccCCCCchhhHHH----HhcC-CCCceeeccCCccChHH----HHHHHc-cCCCCceeccCCCCCCHHH
Q 011708 345 TSLT-GLTHLDLFGARITDSGAAY----LRNF-KNLRSLEICGGGLTDAG----VKHIKD-LSSLTLLNLSQNCNLTDKT 413 (479)
Q Consensus 345 ~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~~~~ 413 (479)
...+ +|++|++++|+++..++.. +..+ ++|++|++++|.+.+.. +..+.. .++|++|++++| .++...
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~ 241 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPS 241 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCC
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHH
Confidence 4555 9999999999998766543 3455 59999999999998843 334444 469999999999 676654
Q ss_pred HHH----HHcCCCCceeecCCCccchhhh-------hhhccCccccccccccccccHH
Q 011708 414 LEL----ISGLTGLVSLNVSNSRITSAGL-------RHLKPLKNLRSLTLESCKVTAN 460 (479)
Q Consensus 414 ~~~----l~~l~~L~~L~l~~~~~~~~~~-------~~l~~~~~L~~L~l~~~~l~~~ 460 (479)
... +..+++|+.|++++|.+..... ..+..+++|+.|++++|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 433 4677999999999998443322 3456788999999999998765
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=2.1e-24 Score=195.00 Aligned_cols=249 Identities=18% Similarity=0.180 Sum_probs=125.9
Q ss_pred ccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCC-----HHH---HHHHhCCCCCCEEEccCCCCChhhHHH
Q 011708 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-----AAC---LDSLSALGSLFYLNLNRCQLSDDGCEK 247 (479)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~ 247 (479)
+...++|+.+++.++.+ ..+..+... |+.|+++++.+. ... ...+..+++|++|++++|.+....+..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34455666676666665 222222221 444444444331 110 011124556666666666555433333
Q ss_pred H--hcCCCCcEEecccccCChHHHHHhcCC-----CCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHh
Q 011708 248 F--SKIGSLKVLNLGFNEITDECLVHLKGL-----TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKL 320 (479)
Q Consensus 248 ~--~~~~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 320 (479)
+ ..+++|+.|++++|.+... +..+..+ ++|++|++++|.+....+. .+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~------------------------~~ 169 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE------------------------QV 169 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT------------------------TC
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH------------------------Hh
Confidence 2 4555555555555555433 2222221 4455555555544443333 44
Q ss_pred hCCCCCceeecCCCCCCHHH--HHHH--hcCCCCCEEEccCCCCch---hhHHHHhcCCCCceeeccCCccChHHH-HHH
Q 011708 321 AGLSSLKSLNLDARQITDTG--LAAL--TSLTGLTHLDLFGARITD---SGAAYLRNFKNLRSLEICGGGLTDAGV-KHI 392 (479)
Q Consensus 321 ~~~~~L~~L~l~~~~~~~~~--~~~l--~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~ 392 (479)
..+++|++|++++|.+.... +..+ ..+++|++|++++|.++. .....+..+++|++|++++|.+.+..+ ..+
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 44455555555555443321 1122 445555666666555552 112223455566666666665555331 223
Q ss_pred HccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccH
Q 011708 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 459 (479)
..+++|++|++++| .++. ++..+. ++|++|++++|.+... +. +..+++|++|++++|+++.
T Consensus 250 ~~l~~L~~L~Ls~N-~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 250 DWPSQLNSLNLSFT-GLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCTTCCEEECTTS-CCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcCCCCEEECCCC-ccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 33566777777776 4552 222222 6788888888877765 23 7778888888888887754
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=4e-24 Score=193.10 Aligned_cols=245 Identities=20% Similarity=0.189 Sum_probs=153.9
Q ss_pred ccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccch-HhHHHh-------hcCCCCCEEEecCCCCCHHHHH
Q 011708 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYL-------KGLQKLTLLNLEGCPVTAACLD 222 (479)
Q Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l-------~~~~~L~~L~l~~~~~~~~~~~ 222 (479)
+....+|+.++++++.. ..+..+... |+.|+++++.+.. ..+..+ ..+++|++|++++|.+....+.
T Consensus 39 ~~~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 45667899999988654 234433322 7777887776632 112222 3689999999999988765555
Q ss_pred HH--hCCCCCCEEEccCCCCChhhHHHHhcC-----CCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHH--H
Q 011708 223 SL--SALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG--L 293 (479)
Q Consensus 223 ~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~ 293 (479)
.+ ..+++|++|++++|.+... +..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+.+.. +
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 44 7899999999999998876 4555555 89999999999998777677889999999999999876532 2
Q ss_pred HHh--hCCCCCCeeeccCCCCCH---HHHHHhhCCCCCceeecCCCCCCHHHH-HHHhcCCCCCEEEccCCCCchhhHHH
Q 011708 294 VNL--TGLTNLESINLSFTGISD---GSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAY 367 (479)
Q Consensus 294 ~~~--~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~ 367 (479)
..+ ..+++|+.|++++|.++. .....+..+++|++|++++|.+....+ ..+..+++|+.|++++|.++..+ ..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP-KG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC-SS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh-hh
Confidence 333 667777777777777662 222333455666666666665554321 22223455555555555554321 11
Q ss_pred HhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCC
Q 011708 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 368 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (479)
+. ++|++|++++|.+++. +. +..+++|++|++++|
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCC
Confidence 11 4455555555544443 11 333444444444444
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=8.9e-23 Score=195.27 Aligned_cols=236 Identities=19% Similarity=0.182 Sum_probs=137.9
Q ss_pred CCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEe
Q 011708 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258 (479)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 258 (479)
+++|+.|+++++.++...+..+..+++|++|++++|.+....+ +..+++|++|++++|.+.... ..++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 3467777777777776655667777777777777776654332 666777777777777655322 336677777
Q ss_pred cccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhh-CCCCCceeecCCCCCC
Q 011708 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQIT 337 (479)
Q Consensus 259 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~ 337 (479)
+++|.+....+ ..+++|+.|++++|.++...+..++.+++|+.|++++|.++...+..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 77666654322 2345666666666666655454555566666666666666554444443 4566666666666655
Q ss_pred HHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCC-HHHHHH
Q 011708 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DKTLEL 416 (479)
Q Consensus 338 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~ 416 (479)
... ....+++|+.|++++|.++..++. +..+++|+.|++++|.+++. +..+..+++|+.|++++| .+. ...+..
T Consensus 183 ~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N-~l~c~~~~~~ 257 (487)
T 3oja_A 183 DVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN-GFHCGTLRDF 257 (487)
T ss_dssp EEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC-CBCHHHHHHH
T ss_pred ccc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCC-CCcCcchHHH
Confidence 432 122355666666666666554332 45556666666666666543 233444556666666666 333 344444
Q ss_pred HHcCCCCceeecC
Q 011708 417 ISGLTGLVSLNVS 429 (479)
Q Consensus 417 l~~l~~L~~L~l~ 429 (479)
+..++.|+.+++.
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 5555555555553
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=6.1e-23 Score=196.41 Aligned_cols=237 Identities=19% Similarity=0.204 Sum_probs=179.5
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEE
Q 011708 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (479)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 281 (479)
.+++|+.|++++|.+....+..+..+++|++|++++|.+....+ +..+++|+.|++++|.+.. +...++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----l~~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-----EEECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-----CCCCCCcCEE
Confidence 34489999999998877766778888999999999988876554 7788899999999887764 2334788899
Q ss_pred eccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHh-cCCCCCEEEccCCCC
Q 011708 282 NLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARI 360 (479)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~ 360 (479)
++++|.+....+ ..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+. .+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 998887775433 3467888888888888876666677788888888888888776555554 678888888888888
Q ss_pred chhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccc-hhhhh
Q 011708 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT-SAGLR 439 (479)
Q Consensus 361 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~ 439 (479)
+..+. ...+++|+.|++++|.+++.++. +..+++|+.|++++| .++. ++..+..+++|+.|++++|++. ...+.
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCC-cCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 76532 23578888888888888876443 677888888888888 6664 3445667788888888888877 44456
Q ss_pred hhccCccccccccc
Q 011708 440 HLKPLKNLRSLTLE 453 (479)
Q Consensus 440 ~l~~~~~L~~L~l~ 453 (479)
.+..++.|+.++++
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 66777778777765
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1.1e-20 Score=184.37 Aligned_cols=269 Identities=19% Similarity=0.117 Sum_probs=196.7
Q ss_pred CCCcEEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEE
Q 011708 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (479)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 210 (479)
.++++|+++++. +...+..+. ++|++|++++|. +... +. .+++|++|++++|.++.... .+++|++|+
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~-l~~l-p~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNN-LTSL-PA---LPPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCC-CSCC-CC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCC-cCccChhhC--CCCcEEEecCCC-CCCC-CC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 468999999854 445554444 799999999864 4322 22 56899999999998875332 678999999
Q ss_pred ecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCCh
Q 011708 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290 (479)
Q Consensus 211 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 290 (479)
+++|.+..... .+++|+.|++++|.+..... .+++|++|++++|.+.... ..+++|+.|++++|.+..
T Consensus 108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCCC
Confidence 99997765322 56789999999998776432 3478999999998876421 245788999999887775
Q ss_pred HHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhc
Q 011708 291 EGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370 (479)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 370 (479)
.. ..+++|+.|++++|.++... ...++|+.|++++|.++..+ ..+++|+.|++++|.++..+ ..
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~ 239 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL 239 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence 32 45688999999888776421 13578888998888776533 23478889999888887643 45
Q ss_pred CCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCc
Q 011708 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445 (479)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 445 (479)
+++|+.|++++|.++..+. .+++|+.|++++| .++ .++..+.++++|+.|++++|++....+..+..++
T Consensus 240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N-~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN-QLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC-CCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 6888889988888876533 5678888888888 676 3456678888888888888888887776665443
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=1.3e-20 Score=183.89 Aligned_cols=269 Identities=20% Similarity=0.101 Sum_probs=208.6
Q ss_pred CCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEE
Q 011708 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185 (479)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 185 (479)
.+++.|+++++.. + ..|..+. ++|++|++++|. +...+. .+++|++|++++|. +.... . .+++|++|
T Consensus 40 ~~l~~L~ls~n~L-~-~lp~~l~--~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp-~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGL-T-TLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLP-V---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCC-S-CCCSCCC--TTCSEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CSCCC-C---CCTTCCEE
T ss_pred CCCcEEEecCCCc-C-ccChhhC--CCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCCc-CCcCC-C---CCCCCCEE
Confidence 4699999999853 3 3344343 799999999974 444333 57899999999865 43222 2 67999999
Q ss_pred EccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCC
Q 011708 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265 (479)
Q Consensus 186 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (479)
++++|.++.... .+++|+.|++++|.+..... .+++|++|++++|.+.... ..+++|+.|++++|.++
T Consensus 107 ~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 107 SIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLT 174 (622)
T ss_dssp EECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred ECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCC
Confidence 999998876432 57899999999998765321 3589999999999887542 24578999999999887
Q ss_pred hHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHh
Q 011708 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345 (479)
Q Consensus 266 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 345 (479)
... ..+++|+.|++++|.+.... ...++|+.|++++|.++... ..+++|+.|++++|.++..+ .
T Consensus 175 ~l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~ 238 (622)
T 3g06_A 175 SLP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----V 238 (622)
T ss_dssp CCC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----C
T ss_pred CCc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----C
Confidence 532 56789999999999887522 23578999999999887422 24589999999999887644 4
Q ss_pred cCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCC
Q 011708 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421 (479)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 421 (479)
.+++|+.|++++|.++..+. .+++|+.|++++|.++.. +..+..+++|+.|++++| .+....+..+..++
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQALREIT 308 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC-CCCHHHHHHHHHHH
T ss_pred CCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC-CCCCcCHHHHHhcc
Confidence 67899999999999886544 678999999999999965 566889999999999999 78888887775443
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=1.2e-21 Score=173.86 Aligned_cols=205 Identities=24% Similarity=0.212 Sum_probs=134.6
Q ss_pred CCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeec
Q 011708 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307 (479)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (479)
+++++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46888888888887776667777888888888888776655556677788888888888777655566677777888887
Q ss_pred cCCCCCHHHHHHhhCCCCCceeecCCCCCCHHH-HHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCc----eeeccCC
Q 011708 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR----SLEICGG 382 (479)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~ 382 (479)
++|.+.......+..+++|++|++++|.+.... +..+..+++|+.|++++|+++...+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 777666544444666777777777777665532 34556667777777777766655444444444444 6666666
Q ss_pred ccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccc
Q 011708 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 383 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
.+....+..+. ..+|+.|++++| .++......+..+++|+.|++++|++.
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCccccC-CCcccEEECCCC-ceeecCHhHhcccccccEEEccCCccc
Confidence 66654333322 235666666666 455444444556666666666666654
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.4e-21 Score=171.07 Aligned_cols=202 Identities=19% Similarity=0.176 Sum_probs=147.9
Q ss_pred CCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeecc
Q 011708 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308 (479)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (479)
+.+.++++++.++.... . -.++++.|+++++.+....+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~-~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS-N--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCS-C--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCC-C--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 56788888877765331 1 12578888888888776555567778888888888887776555556778888888888
Q ss_pred CCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHH
Q 011708 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388 (479)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 388 (479)
+|.+.......+..+++|++|++++|.+.......+..+++|+.|++++|.+...+...+..+++|++|++++|.++...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88777655555667788888888888777666666677788888888888777766656677788888888888777766
Q ss_pred HHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccc
Q 011708 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 389 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
+..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCee
Confidence 666677778888888877 666555555667777888888877653
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=7.4e-21 Score=167.99 Aligned_cols=200 Identities=20% Similarity=0.242 Sum_probs=166.4
Q ss_pred CCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEecc
Q 011708 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284 (479)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 284 (479)
..+.++++++.+... +..+ .+++++|+++++.+....+..+..+++|+.|++++|.+.......+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 577888888877653 2222 2579999999999888777778889999999999998876555556788999999999
Q ss_pred CCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhh
Q 011708 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364 (479)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 364 (479)
+|.+.......+..+++|+.|++++|.++......+..+++|++|++++|.+.......+..+++|+.|++++|.++..+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 99888766667788999999999999888766666788999999999999888776666788899999999999988877
Q ss_pred HHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCC
Q 011708 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407 (479)
Q Consensus 365 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (479)
+..+..+++|++|++++|.++......+..+++|+.|++++|+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 7777889999999999999988777677888999999999983
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=8.3e-20 Score=162.00 Aligned_cols=203 Identities=25% Similarity=0.219 Sum_probs=110.7
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|++++++++......|.++++|++|++++| .+.......+..+++|++|++++|. +....+..+.++++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEE
Confidence 46788888887777666666777778888888774 4555555567777777777777774 344444566677777777
Q ss_pred ecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCC----EEEec
Q 011708 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT----LLNLE 212 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~ 212 (479)
+++++.........+.++++|++|+++++.......+..+.++++|++|++++|.++......+..+++|+ .|+++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 77765433333334566666666666654322212244555566666666666655543333333333333 45555
Q ss_pred CCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccc
Q 011708 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262 (479)
Q Consensus 213 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (479)
+|.+....+..+ ...+|++|++++|.+.......+..+++|+.|++++|
T Consensus 186 ~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 186 LNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp SSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 554433222111 1224444444444444333333334444444444444
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=1.3e-19 Score=162.92 Aligned_cols=195 Identities=28% Similarity=0.378 Sum_probs=159.5
Q ss_pred CCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCee
Q 011708 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (479)
.+++|++|+++++.+.... .+..+++|+.|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 4568999999999887643 57888999999999998876544 88899999999999988764 357888999999
Q ss_pred eccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccC
Q 011708 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385 (479)
Q Consensus 306 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 385 (479)
++++|.++... .+..+++|++|++++|.+..... +..+++|+.|++++|.++...+ +..+++|+.|++++|.++
T Consensus 113 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 99999887643 37888999999999998876543 7788999999999998887554 778899999999999888
Q ss_pred hHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhh
Q 011708 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437 (479)
Q Consensus 386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 437 (479)
+..+ +..+++|++|++++| .+....+ +..+++|+.|++++|++...+
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTS-CCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred cChh--hcCCCCCCEEEccCC-ccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 7654 778899999999998 6765543 788899999999999887644
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=2.3e-20 Score=164.96 Aligned_cols=207 Identities=21% Similarity=0.194 Sum_probs=126.8
Q ss_pred CCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeec
Q 011708 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307 (479)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (479)
++|+.|+++++.+... ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.......+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 3444555544444322 1244455555555555554432 23455556666666666555444444555666666666
Q ss_pred cCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChH
Q 011708 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387 (479)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 387 (479)
++|.++......+..+++|++|++++|.++......+..+++|+.|++++|.++..++..+..+++|++|++++|.+++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 66665544444455666777777777766655545556677777777777777766555566777778888877777776
Q ss_pred HHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCcc
Q 011708 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446 (479)
Q Consensus 388 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 446 (479)
.+..+..+++|+.|++++| .+. +.++.|+.++++.|.+....+..+..++.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CTTTTTTCTTCCEEECCSS-CBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CHHHHhCCcCCCEEEccCC-Ccc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 6666677778888888877 332 34667778888777777666665555444
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=1.7e-20 Score=165.80 Aligned_cols=200 Identities=21% Similarity=0.194 Sum_probs=162.3
Q ss_pred HhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCc
Q 011708 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLK 327 (479)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 327 (479)
...+++|+.|++.++.+... ..+..+++|++|++++|.+... ..+..+++|++|++++|.++......+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 44677899999998887643 3467789999999999987763 3678889999999999988876666677889999
Q ss_pred eeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCC
Q 011708 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407 (479)
Q Consensus 328 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (479)
+|++++|.+.......+..+++|+.|++++|.++..++..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N- 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN- 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-
Confidence 9999999888766666778899999999999888777666788899999999999888876666778899999999998
Q ss_pred CCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccH
Q 011708 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 408 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 459 (479)
.++...+..+..+++|+.|++++|++.. .+++|+.++++.|.++.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 236 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGG
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCC
Confidence 6777666667888999999999997653 46778888887776654
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=1.6e-20 Score=169.38 Aligned_cols=228 Identities=17% Similarity=0.067 Sum_probs=120.1
Q ss_pred CCCCEEEecCCCCCHHHHHH---HhCCCCCCEEEccCCCCChhhHHHH--hcCCCCcEEecccccCChHH----HHHhcC
Q 011708 204 QKLTLLNLEGCPVTAACLDS---LSALGSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNEITDEC----LVHLKG 274 (479)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~----~~~l~~ 274 (479)
..++.+.+.++.+....... ...+++|++|++++|.+....+..+ ..+++|++|++++|.+.... ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35777788777765433222 1234568888887777766555555 66677777777777665421 122345
Q ss_pred CCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHH----HhhCCCCCceeecCCCCCCHHHHH---HHhcC
Q 011708 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLR----KLAGLSSLKSLNLDARQITDTGLA---ALTSL 347 (479)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~---~l~~~ 347 (479)
+++|++|++++|.+....+..++.+++|++|++++|.+...... .+..+++|++|++++|.++..+.. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 66677777766666555445555666666666666655432111 113455566666665555432211 22345
Q ss_pred CCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceee
Q 011708 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427 (479)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 427 (479)
++|++|++++|.+....+..+..+ ..+++|++|++++| .++. ++..+ .++|+.|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~---------------------~~~~~L~~L~Ls~N-~l~~-lp~~~--~~~L~~L~ 278 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRC---------------------MWSSALNSLNLSFA-GLEQ-VPKGL--PAKLRVLD 278 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSC---------------------CCCTTCCCEECCSS-CCCS-CCSCC--CSCCSCEE
T ss_pred CCCCEEECCCCCCCccchhhHHhc---------------------cCcCcCCEEECCCC-CCCc-hhhhh--cCCCCEEE
Confidence 555555555555544322222222 00134555555554 3332 12111 24566666
Q ss_pred cCCCccchhhhhhhccCcccccccccccccc
Q 011708 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 428 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 458 (479)
+++|.+.... .+..+++|+.|++++|+++
T Consensus 279 Ls~N~l~~~~--~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 279 LSSNRLNRAP--QPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCCCCSCC--CTTSCCCCSCEECSSTTTS
T ss_pred CCCCcCCCCc--hhhhCCCccEEECcCCCCC
Confidence 6666555431 1445566666666666654
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=4.3e-19 Score=159.55 Aligned_cols=190 Identities=27% Similarity=0.393 Sum_probs=160.1
Q ss_pred hcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccE
Q 011708 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280 (479)
Q Consensus 201 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (479)
..+++|++|+++++.+.... .+..+++|++|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 45678999999999776542 57889999999999998887665 88899999999999988764 35788999999
Q ss_pred EeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCC
Q 011708 281 LNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360 (479)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 360 (479)
|++++|.+.... .+..+++|+.|++++|.++.... +..+++|+.|++++|.+..... +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 999999887643 38889999999999998876443 7889999999999998887554 77899999999999998
Q ss_pred chhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCC
Q 011708 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 361 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (479)
+...+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC
Confidence 87654 778999999999999998875 3788999999999998
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=9.3e-20 Score=164.43 Aligned_cols=223 Identities=18% Similarity=0.133 Sum_probs=162.0
Q ss_pred CCCCcEEEccCCccchHhHHH---hhcCCCCCEEEecCCCCCHHHHHHH--hCCCCCCEEEccCCCCChhh----HHHHh
Q 011708 179 LTNLKSLQISCSKVTDSGIAY---LKGLQKLTLLNLEGCPVTAACLDSL--SALGSLFYLNLNRCQLSDDG----CEKFS 249 (479)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~----~~~~~ 249 (479)
...++.+.+.+..++...... ...+++|++|++++|.+....+..+ ..+++|++|++++|.+.... ...+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 356788888888776544332 2345679999999998876656555 78899999999999888632 24455
Q ss_pred cCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHH----HHhhCCCCCCeeeccCCCCCHHHH--H-HhhC
Q 011708 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL----VNLTGLTNLESINLSFTGISDGSL--R-KLAG 322 (479)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~--~-~l~~ 322 (479)
.+++|+.|++++|.+....+..+..+++|++|++++|.+..... ..+..+++|++|++++|.++.... . .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 78999999999999987777778899999999999998765322 123578999999999999874322 2 3468
Q ss_pred CCCCceeecCCCCCCHHHHHHHhcC---CCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCC
Q 011708 323 LSSLKSLNLDARQITDTGLAALTSL---TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399 (479)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 399 (479)
+++|++|++++|.+....+..+..+ ++|++|++++|+++..+. .+ .++|++|++++|.+++... +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~~--~~~L~~L~Ls~N~l~~~~~--~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-GL--PAKLRVLDLSSNRLNRAPQ--PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-CC--CSCCSCEECCSCCCCSCCC--TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-hh--cCCCCEEECCCCcCCCCch--hhhCCCcc
Confidence 8999999999999887544444444 688899998888875422 22 2577777777776665311 34455666
Q ss_pred ceeccCC
Q 011708 400 LLNLSQN 406 (479)
Q Consensus 400 ~L~l~~~ 406 (479)
.|++++|
T Consensus 298 ~L~L~~N 304 (310)
T 4glp_A 298 NLTLDGN 304 (310)
T ss_dssp CEECSST
T ss_pred EEECcCC
Confidence 6666655
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.1e-19 Score=161.76 Aligned_cols=203 Identities=22% Similarity=0.187 Sum_probs=155.3
Q ss_pred HhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCC
Q 011708 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE 303 (479)
Q Consensus 224 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (479)
++.++++++++++++.++..... -.++++.|++++|.+....+..+..+++|+.|++++|.+..... ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~---~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD---LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC---CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCC---CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 45678899999999887754322 13678999999998887766778888999999999988775432 26788899
Q ss_pred eeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCc
Q 011708 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383 (479)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 383 (479)
.|++++|.+... +..+..+++|++|++++|.++...+..+..+++|+.|++++|+++..++..+..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 999998877642 3345677888888888888877666667778888888888888887766667778888888888888
Q ss_pred cChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccc
Q 011708 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 384 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
++......+..+++|+.|++++| .++. ++..+...++|+.|++++|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N-~l~~-ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQEN-SLYT-IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCC-cCCc-cChhhcccccCCeEEeCCCCcc
Confidence 88776666677888888888888 5663 3444556678888888888764
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.3e-19 Score=161.12 Aligned_cols=201 Identities=22% Similarity=0.183 Sum_probs=169.8
Q ss_pred hhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCcc
Q 011708 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279 (479)
Q Consensus 200 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 279 (479)
+..++++++++++++.+.... ..+ .++++.|++++|.+....+..+..+++|+.|++++|.+..... ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALP-PDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCC-SCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCC-CCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 567889999999998876542 222 3689999999999998888889999999999999998875432 26789999
Q ss_pred EEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCC
Q 011708 280 SLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359 (479)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 359 (479)
+|++++|.+... +..+..+++|+.|++++|.++...+..+..+++|++|++++|.+.......+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 999999988743 3456788999999999999987666678899999999999999988777777889999999999999
Q ss_pred CchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCC
Q 011708 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407 (479)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (479)
++..+...+..+++|+.|++++|.++.. +..+...++|+.+++++|+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCC
Confidence 9987777778899999999999999865 4455667899999999984
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=3.5e-20 Score=160.57 Aligned_cols=197 Identities=17% Similarity=0.191 Sum_probs=110.4
Q ss_pred CCCEEEccCCCCChhhHHHHhcCCCCcEEeccccc-CChHHHHHhcCCCCccEEeccC-CCCChHHHHHhhCCCCCCeee
Q 011708 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTGLTNLESIN 306 (479)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 306 (479)
++++|++++|.+....+..+..+++|+.|++++|. +....+..+..+++|++|++++ +.+.......+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 66777777776666555556666666666666664 5444333455566666666665 555443333444555555555
Q ss_pred ccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCC---EEEccCC-CCchhhHHHHhcCCCCc-eeeccC
Q 011708 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT---HLDLFGA-RITDSGAAYLRNFKNLR-SLEICG 381 (479)
Q Consensus 307 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~ 381 (479)
+++|.++. .+. +..+++|+ .|++++| .++..++..+..+++|+ .|++++
T Consensus 112 l~~n~l~~------------------------lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 112 IFNTGLKM------------------------FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEECCCS------------------------CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred CCCCCCcc------------------------ccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 55554432 111 33344444 5666655 55554444455566666 666666
Q ss_pred CccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcC-CCCceeecCCCccchhhhhhhccCccccccccccc
Q 011708 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455 (479)
Q Consensus 382 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 455 (479)
|.++......+.. ++|++|++++|+.++...+..+.++ ++|+.|++++|++...+.. .+++|+.|+++++
T Consensus 166 n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 6655443333333 5666666666633554444555666 6777777777766654332 4556667766665
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=8.3e-19 Score=151.93 Aligned_cols=182 Identities=15% Similarity=0.154 Sum_probs=104.2
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
++++.|++++++++......|..+++|++|+++++..++......+..+++|++|++++|+.+....+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 46888888888877766666777888888888875436665556677777888888776223444444556677777777
Q ss_pred ecccccccccccccccCCcCcc---EEeccCCCCCCccccccccCCCCCc-EEEccCCccchHhHHHhhcCCCCCEEEec
Q 011708 137 DLERCTRIHGGLVNLKGLMKLE---SLNIKWCNCITDSDMKPLSGLTNLK-SLQISCSKVTDSGIAYLKGLQKLTLLNLE 212 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 212 (479)
++++|. +...+ .+..+++|+ +|+++++..+.......+..+++|+ .|+++++.++......+.. ++|+.|+++
T Consensus 111 ~l~~n~-l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTG-LKMFP-DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEEC-CCSCC-CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCC-Ccccc-ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 777653 22222 255555555 6666654344444444455556666 6666655555332222222 445555555
Q ss_pred CCC-CCHHHHHHHhCC-CCCCEEEccCCCCC
Q 011708 213 GCP-VTAACLDSLSAL-GSLFYLNLNRCQLS 241 (479)
Q Consensus 213 ~~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~ 241 (479)
+|. +....+..+..+ ++|+.|++++|.+.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 552 443333334444 44444444444443
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=5.6e-19 Score=154.10 Aligned_cols=179 Identities=21% Similarity=0.276 Sum_probs=123.5
Q ss_pred CCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecC
Q 011708 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332 (479)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 332 (479)
..+.++++++.+... +..+ .++++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~-p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSV-PSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSC-CSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcccc-CCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 456777777666532 2212 2567888888887776655667777788888888777766555556677777777777
Q ss_pred CCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHH
Q 011708 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412 (479)
Q Consensus 333 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 412 (479)
+|.+.......+..+++|+.|++++|.++..++..+..+++|++|++++|.+++..+..+..+++|++|++++| .++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCcc
Confidence 77777655555667777777777777777665555666777777777777777665556666777777777777 56655
Q ss_pred HHHHHHcCCCCceeecCCCccch
Q 011708 413 TLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 413 ~~~~l~~l~~L~~L~l~~~~~~~ 435 (479)
.+..+..+++|+.|++++|++..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCceeC
Confidence 55556667777777777777654
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=2e-18 Score=150.64 Aligned_cols=179 Identities=20% Similarity=0.208 Sum_probs=151.1
Q ss_pred CCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeec
Q 011708 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307 (479)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (479)
.+.++++++++.+...... + .++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCC-C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4578899988877754322 2 368999999999988776667888999999999999888776777888999999999
Q ss_pred cCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChH
Q 011708 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387 (479)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 387 (479)
++|.++......+..+++|++|++++|.++......+..+++|+.|++++|.++..++..+..+++|++|++++|.++..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99988876666678899999999999998877666677889999999999999887776788899999999999999988
Q ss_pred HHHHHHccCCCCceeccCCCCCC
Q 011708 388 GVKHIKDLSSLTLLNLSQNCNLT 410 (479)
Q Consensus 388 ~~~~~~~~~~L~~L~l~~~~~~~ 410 (479)
.+..+..+++|+.|++++| .+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N-~~~ 192 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGN-QFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSC-CBC
T ss_pred CHHHHhCCCCCCEEEeeCC-cee
Confidence 7777888999999999999 443
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=4.9e-17 Score=144.72 Aligned_cols=172 Identities=28% Similarity=0.318 Sum_probs=87.5
Q ss_pred CCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCee
Q 011708 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (479)
.+++|+.|++++|.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 3456667777666655432 35556666666666665554332 55555666666665555432 224445555555
Q ss_pred eccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccC
Q 011708 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385 (479)
Q Consensus 306 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 385 (479)
++++|.+... ..+ ..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.
T Consensus 118 ~L~~n~i~~~--~~l------------------------~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 118 SLEHNGISDI--NGL------------------------VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp ECTTSCCCCC--GGG------------------------GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECCCCcCCCC--hhh------------------------cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 5555544432 223 3444555555555544433 23444555555555555554
Q ss_pred hHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchh
Q 011708 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436 (479)
Q Consensus 386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 436 (479)
+..+ +..+++|+.|++++| .++... .+..+++|+.|++++|++...
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N-~i~~l~--~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKN-HISDLR--ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSS-CCCBCG--GGTTCTTCSEEEEEEEEEECC
T ss_pred cchh--hcCCCccCEEECCCC-cCCCCh--hhccCCCCCEEECcCCcccCC
Confidence 4432 444555555555555 444321 245555666666666555443
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=4.8e-17 Score=144.81 Aligned_cols=172 Identities=28% Similarity=0.348 Sum_probs=133.9
Q ss_pred CCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEE
Q 011708 275 LTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354 (479)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 354 (479)
+++|+.|++++|.+... ..+..+++|+.|++++|.+++... +..+++|++|++++|.+.... .+..+++|+.|+
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCEEE
Confidence 44566666666655432 235556777777777776665433 677788888888887776633 377889999999
Q ss_pred ccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccc
Q 011708 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
+++|++... ..+..+++|+.|++++|.+++. ..+..+++|++|++++| .++...+ +..+++|+.|++++|.+.
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCC
Confidence 999988875 3577899999999999999886 56788999999999999 7776554 889999999999999998
Q ss_pred hhhhhhhccCccccccccccccccHHH
Q 011708 435 SAGLRHLKPLKNLRSLTLESCKVTAND 461 (479)
Q Consensus 435 ~~~~~~l~~~~~L~~L~l~~~~l~~~~ 461 (479)
.. ..+..+++|+.|++++|+++..+
T Consensus 192 ~l--~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 DL--RALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp BC--GGGTTCTTCSEEEEEEEEEECCC
T ss_pred CC--hhhccCCCCCEEECcCCcccCCc
Confidence 85 34889999999999999886543
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=8.5e-17 Score=134.57 Aligned_cols=153 Identities=21% Similarity=0.300 Sum_probs=106.4
Q ss_pred CCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceee
Q 011708 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378 (479)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 378 (479)
+++|+.|+++++.+.... .+..+++|++|++++|.+... ..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 355666666666555322 355667777777777655443 2456677888888888877765566667778888888
Q ss_pred ccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCcccccccccccccc
Q 011708 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 379 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 458 (479)
+++|.+++..+..+..+++|++|++++|..++... .+..+++|+.|++++|.+.+.. .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 88888887667777788888888888883355442 4778888888888888877743 6778888888888888875
Q ss_pred H
Q 011708 459 A 459 (479)
Q Consensus 459 ~ 459 (479)
.
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=2.5e-16 Score=153.49 Aligned_cols=176 Identities=28% Similarity=0.328 Sum_probs=93.7
Q ss_pred CCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCee
Q 011708 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESI 305 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (479)
.+++|+.|+++++.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... .
T Consensus 41 ~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~----------- 103 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--S----------- 103 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--T-----------
T ss_pred cCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--h-----------
Confidence 3455666666666554432 34555555666655555543322 44555555555555544331 1
Q ss_pred eccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccC
Q 011708 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385 (479)
Q Consensus 306 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 385 (479)
.+..+++|+.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.
T Consensus 104 -------------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 104 -------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp -------------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred -------------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 244455555555555554432 2344555666666666655543 23455666666666666665
Q ss_pred hHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhh
Q 011708 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440 (479)
Q Consensus 386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 440 (479)
+..+ +..+++|+.|+|++| .+... ..+..+++|+.|++++|++...+...
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N-~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKN-HISDL--RALAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSS-CCCBC--GGGTTCTTCSEEECCSEEEECCCCCC
T ss_pred Cchh--hccCCCCCEEECcCC-CCCCC--hHHccCCCCCEEEccCCcCcCCcccc
Confidence 5433 555666666666666 45443 23556666666666666665544333
No 99
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.5e-17 Score=151.20 Aligned_cols=287 Identities=14% Similarity=0.121 Sum_probs=164.5
Q ss_pred CcCccEEeccCCCCCCccccccccC-CCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhC------
Q 011708 154 LMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA------ 226 (479)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~------ 226 (479)
+.+++.|.+.+. +.......+.. +++|+.|+++++++...... -+.++.++.+....+.+. ...|..
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~-~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK-AGTYPNGKFYIYMANFVP---AYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEEECCEEES-SSSSGGGCCEEECTTEEC---TTTTEEEETTEE
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcceeEEecCc-cccccccccccccccccC---HHHhcccccccc
Confidence 456777777652 22223334443 67778888777766511000 011122233333333221 234556
Q ss_pred --CCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCC----CChHHHHHhhCCC
Q 011708 227 --LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG----IGDEGLVNLTGLT 300 (479)
Q Consensus 227 --~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~----~~~~~~~~~~~~~ 300 (479)
+++|+.+++.. .+......+|..+++|+.+++..+.+.......|..+.++..+...... ........+..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 77888888877 6766666777778888888887776655555556666666655554320 1111111233344
Q ss_pred CCC-eeeccCCCC-CHHHHHHhhCCCCCceeecCCCCCCHHHHHHH-hcCCCCCEEEccCCCCchhhHHHHhcCCCCcee
Q 011708 301 NLE-SINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377 (479)
Q Consensus 301 ~L~-~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 377 (479)
.|+ .+.+..... .......-....++..+.+.+. +.......+ ..|++|+.+++++|+++..+..+|.++++|+.+
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 554 344432211 1111111113455666666554 333333333 247778888887777777766677777777777
Q ss_pred eccCCccChHHHHHHHccCCCC-ceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCccccccc
Q 011708 378 EICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451 (479)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 451 (479)
.+.++ +.......|.++++|+ .+++.+ .++.+...+|.+|++|+.|++.++.+...+..+|..|++|+.++
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 77765 6666666777777777 777776 46666666777777777777777777777777777777777765
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=1.4e-16 Score=155.42 Aligned_cols=174 Identities=29% Similarity=0.348 Sum_probs=139.8
Q ss_pred CCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEE
Q 011708 274 GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353 (479)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 353 (479)
.+++|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.... .+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEE
Confidence 345666667766655542 235667778888888777765443 778889999999988887633 57789999999
Q ss_pred EccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCcc
Q 011708 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433 (479)
Q Consensus 354 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 433 (479)
++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++| .+....+ +..+++|+.|++++|.+
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCC
Confidence 9999998874 3478899999999999999886 56788999999999999 7776655 88999999999999999
Q ss_pred chhhhhhhccCccccccccccccccHHHH
Q 011708 434 TSAGLRHLKPLKNLRSLTLESCKVTANDI 462 (479)
Q Consensus 434 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~ 462 (479)
... ..+..+++|+.|++++|+++...+
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 875 468899999999999998876433
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.2e-15 Score=127.54 Aligned_cols=102 Identities=26% Similarity=0.388 Sum_probs=41.3
Q ss_pred CCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeecc
Q 011708 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308 (479)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (479)
+|++|+++++.+.... .+..+++|+.|++++|.+... ..+..+++|++|++++|.+....+..++.+++|+.|+++
T Consensus 45 ~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4444444444443221 233444444444444433221 123344444444444444443333333344444444444
Q ss_pred CCCCCHHHHHHhhCCCCCceeecCCC
Q 011708 309 FTGISDGSLRKLAGLSSLKSLNLDAR 334 (479)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~ 334 (479)
+|.+++..+..+..+++|++|++++|
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCC
Confidence 44443333333334444444444443
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=1.1e-16 Score=135.29 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=97.9
Q ss_pred CCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEc
Q 011708 276 TNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355 (479)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 355 (479)
++|++|+++++.+.......+..+++|++|++++|.++......+..+++|++|++++|.+.......+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34555555555444333333445555555555555554433333455666666666666665544444556677777777
Q ss_pred cCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccch
Q 011708 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 435 (479)
++|.++..++..+..+++|++|++++|.+++.....+..+++|++|++++| .+. ..+++|+.|+++.|.+..
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC-CBC-------CCTTTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC-Cee-------cCCCCHHHHHHHHHhCCc
Confidence 777766655555566777777777777776655555666777777777777 222 345677777777777766
Q ss_pred hhhhhhccCcc
Q 011708 436 AGLRHLKPLKN 446 (479)
Q Consensus 436 ~~~~~l~~~~~ 446 (479)
..+..++.++.
T Consensus 180 ~ip~~~~~l~~ 190 (208)
T 2o6s_A 180 VVRNSAGSVAP 190 (208)
T ss_dssp TBBCTTSSBCT
T ss_pred eeeccCccccC
Confidence 66655555443
No 103
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=6.3e-16 Score=140.50 Aligned_cols=102 Identities=13% Similarity=0.100 Sum_probs=56.8
Q ss_pred CCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCC-eeeccCCCCCHHHHHHhhCCCCCcee
Q 011708 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLE-SINLSFTGISDGSLRKLAGLSSLKSL 329 (479)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L 329 (479)
+++|+.+++++|.++......|.++.+|+.+.+.++ +.......|.++++|+ .+.+.. .++.....+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 455555555554444444444555555555555554 4444444455566666 666654 4444444556666666666
Q ss_pred ecCCCCCCHHHHHHHhcCCCCCEEE
Q 011708 330 NLDARQITDTGLAALTSLTGLTHLD 354 (479)
Q Consensus 330 ~l~~~~~~~~~~~~l~~~~~L~~L~ 354 (479)
++..+.+...+..+|.+|++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 6666666665556666666666654
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.3e-16 Score=134.80 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=84.9
Q ss_pred CCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecC
Q 011708 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332 (479)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 332 (479)
+++.|+++++.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.++......+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 34444444444333222223344444444444444443333334445555555555555544333334555666666666
Q ss_pred CCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHH
Q 011708 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412 (479)
Q Consensus 333 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 412 (479)
+|.+.......+..+++|+.|++++|.++..+...+..+++|++|++++|.+.. .++.|++|+++.| .++..
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n-~~~g~ 180 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWIN-KHSGV 180 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHH-HCTTT
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHH-hCCce
Confidence 666555444445566677777777776666555555667777777777775543 3566777777766 45544
Q ss_pred HHHHHH
Q 011708 413 TLELIS 418 (479)
Q Consensus 413 ~~~~l~ 418 (479)
.+..++
T Consensus 181 ip~~~~ 186 (208)
T 2o6s_A 181 VRNSAG 186 (208)
T ss_dssp BBCTTS
T ss_pred eeccCc
Confidence 444443
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=3.3e-16 Score=143.58 Aligned_cols=186 Identities=13% Similarity=0.084 Sum_probs=100.9
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|++++++++......|.++++|++|+|+++..........|.++++++++...+++.+....+..|.++++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 46777777777777655556777777777777775433333444566666666544433334455545566677777777
Q ss_pred ecccccccccccccccCCcCccEEeccCCCCCCccccccccCC-CCCcEEEccCCccchHhHHHhhcCCCCCEEEecC-C
Q 011708 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG-C 214 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~ 214 (479)
+++++.........+....++..+++.++..+.......+..+ ..++.|++++|.++......+ ...+|+++++.+ +
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCC
Confidence 7776543322222344455566666655444544444444433 346666666666554322222 234556666553 3
Q ss_pred CCCHHHHHHHhCCCCCCEEEccCCCCChh
Q 011708 215 PVTAACLDSLSALGSLFYLNLNRCQLSDD 243 (479)
Q Consensus 215 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 243 (479)
.+.......|..+++|++|++++|.++..
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 33333333445555566666665555543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=4.4e-16 Score=143.35 Aligned_cols=176 Identities=20% Similarity=0.217 Sum_probs=118.0
Q ss_pred cEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhh-CCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCC
Q 011708 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333 (479)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (479)
+.++++++.+... |.. -.+.++.|++++|.++......+. .+++|+.|++++|.++......+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~i-P~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSC-CSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc-Ccc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4677777666532 211 234577888888877765555555 677888888887777765555667777777888777
Q ss_pred CCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHH---HccCCCCceeccCCCCCC
Q 011708 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI---KDLSSLTLLNLSQNCNLT 410 (479)
Q Consensus 334 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 410 (479)
|.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+ ..+++|+.|++++| .++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCC
Confidence 77776655566677777777777777776666666777777777777777776544444 45677777777777 566
Q ss_pred HHHHHHHHcCCC--CceeecCCCccc
Q 011708 411 DKTLELISGLTG--LVSLNVSNSRIT 434 (479)
Q Consensus 411 ~~~~~~l~~l~~--L~~L~l~~~~~~ 434 (479)
......+..++. ++.|++.+|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 555556666665 366777777654
No 107
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.57 E-value=3.5e-14 Score=130.24 Aligned_cols=135 Identities=27% Similarity=0.399 Sum_probs=61.5
Q ss_pred CCCcEEecccccCChHHHHHhc-----CCCCccEEeccCCCCChHHHHHhh-CCCCCCeeeccCCCCCHHHHHHhh----
Q 011708 252 GSLKVLNLGFNEITDECLVHLK-----GLTNLESLNLDSCGIGDEGLVNLT-GLTNLESINLSFTGISDGSLRKLA---- 321 (479)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~---- 321 (479)
+.|+.|++++|.++......+. ..++|++|++++|.+++.....+. .+++|+.|++++|.+++.....++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566666666665544333221 224566666666655544433332 234455555555555544433332
Q ss_pred -CCCCCceeecCCCCCCHHHHHHH----hcCCCCCEEEccCCCCchhhH----HHHhcCCCCceeeccCCccCh
Q 011708 322 -GLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTD 386 (479)
Q Consensus 322 -~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~ 386 (479)
..++|++|++++|.+++.+...+ ..+++|++|++++|.+++.+. ..+...++|++|++++|.+++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 23445555555555444333222 334445555555554444331 122333444444444444443
No 108
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.57 E-value=2.2e-14 Score=131.58 Aligned_cols=185 Identities=22% Similarity=0.265 Sum_probs=141.1
Q ss_pred CCCccEEeccCCCCChHHHHHhhC-----CCCCCeeeccCCCCCHHHHHHhh-CCCCCceeecCCCCCCHHHHHHHh---
Q 011708 275 LTNLESLNLDSCGIGDEGLVNLTG-----LTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT--- 345 (479)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~--- 345 (479)
.++|+.|++++|.++......+.. .++|+.|++++|.+++.....+. .+++|++|++++|.+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467999999999998766555433 37899999999999887666655 457899999999999988776653
Q ss_pred --cCCCCCEEEccCCCCchhhHHH----HhcCCCCceeeccCCccChHHH----HHHHccCCCCceeccCCCCCCHHHHH
Q 011708 346 --SLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDKTLE 415 (479)
Q Consensus 346 --~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~ 415 (479)
..++|++|++++|.+++.+... +..+++|++|++++|.+.+... ..+...++|++|++++| .+++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence 4688999999999998755444 3678999999999999987654 34456789999999999 78876544
Q ss_pred ----HHHcCCCCceeecCCCccchhhhhhhccCc--c---ccccc--cccccccHH
Q 011708 416 ----LISGLTGLVSLNVSNSRITSAGLRHLKPLK--N---LRSLT--LESCKVTAN 460 (479)
Q Consensus 416 ----~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~--~---L~~L~--l~~~~l~~~ 460 (479)
.+...++|++|++++|++.+.+...+.... . |+.+. +..+.++..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 345679999999999999988877664432 2 77777 777777665
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=3.8e-16 Score=132.78 Aligned_cols=152 Identities=20% Similarity=0.295 Sum_probs=104.1
Q ss_pred cEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCC
Q 011708 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358 (479)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 358 (479)
+.++.+++.+.... ..+ .+.++.|++++|.++......+..+++|+.|++++|.+....+..+.++++|+.|++++|
T Consensus 14 ~~v~c~~~~l~~iP-~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIP-TNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCC-SSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCC-Ccc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45566665554321 111 256778888877777655556667777788888777777665566677777777777777
Q ss_pred CCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccc
Q 011708 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 359 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
.++..+...+..+++|++|++++|.++...+..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 777666655667777777777777777766666777777777777777 566555555666777777777777653
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=6.6e-16 Score=135.15 Aligned_cols=170 Identities=25% Similarity=0.318 Sum_probs=126.5
Q ss_pred CCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecC
Q 011708 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332 (479)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 332 (479)
++..++++.+.+.+.. .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+++... +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4555666666665432 3456788899999988777543 57778889999999888876544 7788889999998
Q ss_pred CCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHH
Q 011708 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412 (479)
Q Consensus 333 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 412 (479)
+|.+..... +.. ++|+.|++++|.++... .+..+++|+.|++++|.+++.. .+..+++|++|++++| .++..
T Consensus 94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N-~i~~~ 165 (263)
T 1xeu_A 94 RNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN-EITNT 165 (263)
T ss_dssp SSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTS-CCCBC
T ss_pred CCccCCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCC-cCcch
Confidence 888776332 223 78888999888887642 4778888888888888888763 5777888888888888 66654
Q ss_pred HHHHHHcCCCCceeecCCCccchhhh
Q 011708 413 TLELISGLTGLVSLNVSNSRITSAGL 438 (479)
Q Consensus 413 ~~~~l~~l~~L~~L~l~~~~~~~~~~ 438 (479)
..+..+++|+.|++++|++...+.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred --HHhccCCCCCEEeCCCCcccCCcc
Confidence 556778888888888888766543
No 111
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=4e-16 Score=145.49 Aligned_cols=335 Identities=15% Similarity=0.140 Sum_probs=177.7
Q ss_pred CChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEeccccccccccc
Q 011708 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148 (479)
Q Consensus 69 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 148 (479)
++.....+|.+|.+|+.+.+.. .++..+..+|.+|.+|+.++++.+ +......+|.++.+|+.+.+... ......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecc
Confidence 3444556677777888877764 356666667777777877777654 34444556667777777666542 222222
Q ss_pred ccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCC
Q 011708 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228 (479)
Q Consensus 149 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 228 (479)
.++.++..++..... ........+|.+|++|+.+.+..+ +.......|.++.+|+.+.+..+
T Consensus 134 ~aF~~~~~~~~~~~~---~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-------------- 195 (394)
T 4fs7_A 134 EAFKGCDFKEITIPE---GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-------------- 195 (394)
T ss_dssp TTTTTCCCSEEECCT---TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--------------
T ss_pred eeeecccccccccCc---cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--------------
Confidence 334444333322222 122223345556666666666433 12122233445555555554332
Q ss_pred CCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeecc
Q 011708 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308 (479)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (479)
+......++..+..|+.+.+..+.... ........+|+.+.+... ........+..+..++.+.+.
T Consensus 196 -----------~~~I~~~~F~~~~~L~~i~~~~~~~~i--~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~ 261 (394)
T 4fs7_A 196 -----------LKIIRDYCFAECILLENMEFPNSLYYL--GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQ 261 (394)
T ss_dssp -----------CCEECTTTTTTCTTCCBCCCCTTCCEE--CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEEC
T ss_pred -----------ceEeCchhhccccccceeecCCCceEe--ehhhcccCCCceEEECCC-ceecccccccccccceeEEcC
Confidence 222222333344444444433221100 001112234455544332 111222234445555555554
Q ss_pred CCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHH
Q 011708 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388 (479)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 388 (479)
.+. .......+..++.++.+......+.. ..+..+.+|+.+.+..+ +...+..++.+|.+|+.+.+.++ ++...
T Consensus 262 ~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~ 335 (394)
T 4fs7_A 262 NNK-LRIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG 335 (394)
T ss_dssp CTT-CEECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred CCc-ceeeccccccccccceeccCceeecc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEh
Confidence 331 11222334455666666554433222 33556777777777654 44455556677777888777543 55555
Q ss_pred HHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCcccccc
Q 011708 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450 (479)
Q Consensus 389 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 450 (479)
...|.+|.+|+.+++..+ ++.+...+|.+|++|+.+++..+ +... ..+|..|++|+.+
T Consensus 336 ~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence 667777888888888654 66666677888888888888654 2222 3567888888765
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=1e-15 Score=130.08 Aligned_cols=152 Identities=18% Similarity=0.238 Sum_probs=97.9
Q ss_pred cEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHH-HHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccC
Q 011708 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357 (479)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 357 (479)
+.++++++.++... .. -.+.++.|++++|.++...+ ..+..+++|++|++++|.++......+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~~iP-~~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIP-EH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCC-SC--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCc-cC--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777776655421 11 12456677777777665422 2355667777777777777665555566677777777777
Q ss_pred CCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccc
Q 011708 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 358 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 7776666666666777777777777776665566666677777777776 566555566666777777777777654
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=1.8e-15 Score=139.29 Aligned_cols=175 Identities=19% Similarity=0.159 Sum_probs=146.4
Q ss_pred CCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhc-CCCCccEEeccCCCCChHHHHHhhCCCCCCeeecc
Q 011708 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK-GLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308 (479)
Q Consensus 230 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (479)
-+.++++++.+..... . -.+.++.|++++|.++......+. .+++|+.|++++|.+.......+..+++|+.|+++
T Consensus 20 ~~~l~c~~~~l~~iP~-~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQ-S--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCS-S--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCc-c--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3678888887765432 1 234689999999999876666666 89999999999999987777778899999999999
Q ss_pred CCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHH---hcCCCCceeeccCCccC
Q 011708 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLT 385 (479)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~ 385 (479)
+|.++......+..+++|+.|++++|.+....+..+..+++|+.|++++|.++..+...+ ..+++|+.|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999987666678899999999999999988777778899999999999999988766655 56899999999999999
Q ss_pred hHHHHHHHccCC--CCceeccCCC
Q 011708 386 DAGVKHIKDLSS--LTLLNLSQNC 407 (479)
Q Consensus 386 ~~~~~~~~~~~~--L~~L~l~~~~ 407 (479)
......+..++. ++.|++++|+
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSC
T ss_pred ccCHHHhhhccHhhcceEEecCCC
Confidence 887788888887 4899999983
No 114
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=1.2e-15 Score=142.22 Aligned_cols=335 Identities=15% Similarity=0.157 Sum_probs=214.4
Q ss_pred CChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcCccEEeccCCCCCCcccc
Q 011708 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173 (479)
Q Consensus 94 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 173 (479)
++.++..+|.+|.+|+.+.++.+ ++.....+|.+|++|+.+++..+ .......++..|.+|+.+.+.. .+.....
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL--MLKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC--ceeeecc
Confidence 44455566777888888887653 44455566777777777777642 2222233455666666655442 2222233
Q ss_pred ccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCC
Q 011708 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253 (479)
Q Consensus 174 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 253 (479)
.+|.++..+.... ..... .....+|..+.+|+.+.+..+ +......+|..+.+
T Consensus 134 ~aF~~~~~~~~~~------------------------~~~~~--~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~ 186 (394)
T 4fs7_A 134 EAFKGCDFKEITI------------------------PEGVT--VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGK 186 (394)
T ss_dssp TTTTTCCCSEEEC------------------------CTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred eeeeccccccccc------------------------Ccccc--ccchhhhcccCCCcEEecCCc-cceeccccccCCCC
Confidence 3333333222111 11110 001124556677777777543 33344567788888
Q ss_pred CcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCC
Q 011708 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333 (479)
Q Consensus 254 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (479)
|+.+.+..+ +.......+..+..|+.+.+...... . .........|+.+.+... +.......+..+..++.+.+..
T Consensus 187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-L-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-E-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECC
T ss_pred ceEEEcCCC-ceEeCchhhccccccceeecCCCceE-e-ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCC
Confidence 999888764 33333445778888998888765221 1 112234578888888643 3333344567889999999976
Q ss_pred CCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHH
Q 011708 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413 (479)
Q Consensus 334 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 413 (479)
+. ...+...+..++.++.+......+. ...+..+.+|+.+.+.++ ++......|.+|.+|+.+++.++ ++.+.
T Consensus 263 ~~-~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~ 335 (394)
T 4fs7_A 263 NK-LRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIG 335 (394)
T ss_dssp TT-CEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEEC
T ss_pred Cc-ceeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEh
Confidence 53 3334455678889999887765432 335678899999999764 66666677889999999999764 77777
Q ss_pred HHHHHcCCCCceeecCCCccchhhhhhhccCccccccccccccccHHHHHHhhhCCCCccccC
Q 011708 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476 (479)
Q Consensus 414 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~p~L~~l 476 (479)
..+|.+|.+|+.+.+..+ +...+..+|..|++|+.+++..+ ++..+ .++ ..|++|+.+
T Consensus 336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~-~~F--~~c~~L~~I 393 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYR-YDF--EDTTKFKWI 393 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGG-GGB--CTTCEEEEE
T ss_pred HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhh-hee--cCCCCCcEE
Confidence 888999999999999876 77778889999999999999765 33322 234 378888765
No 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=6.5e-17 Score=148.28 Aligned_cols=240 Identities=17% Similarity=0.102 Sum_probs=173.1
Q ss_pred CEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHH-HHHhcCCCCccE-Eecc
Q 011708 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLES-LNLD 284 (479)
Q Consensus 207 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~-L~l~ 284 (479)
++++.+++.++.. |..+ .+++++|++++|.++.....+|..+++|+.|++++|.+.... ...|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4567777666543 2222 358999999999999887788999999999999999875433 345677888776 4555
Q ss_pred CCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCC-CCCCHHHHHHHhcC-CCCCEEEccCCCCch
Q 011708 285 SCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDLFGARITD 362 (479)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 362 (479)
++.+....+..+..+++|+.|++++|.+.......+....++..+++.+ +.+.......+..+ ..++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6778776677788999999999999988754444444556777888865 45555444445444 468899999999987
Q ss_pred hhHHHHhcCCCCceeeccC-CccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhh
Q 011708 363 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441 (479)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 441 (479)
.+...+ ...+|+++.+.+ |.++......|..+++|++|++++| .++..... .+.+|+.|.+.++.-.+..+ .+
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~---~~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY---GLENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS---SCTTCCEEECTTCTTCCCCC-CT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh---hhccchHhhhccCCCcCcCC-Cc
Confidence 655444 456899999974 6777776677888999999999999 77765443 35566666666554322222 46
Q ss_pred ccCccccccccccc
Q 011708 442 KPLKNLRSLTLESC 455 (479)
Q Consensus 442 ~~~~~L~~L~l~~~ 455 (479)
..+++|+.+++..+
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 77889999998754
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=1.3e-15 Score=133.25 Aligned_cols=163 Identities=21% Similarity=0.300 Sum_probs=130.4
Q ss_pred CCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeecc
Q 011708 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLS 308 (479)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (479)
++..++++++.+.+.. .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4555667777766544 4667889999999998887542 57788999999999998876554 8889999999999
Q ss_pred CCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHH
Q 011708 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388 (479)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 388 (479)
+|.++... .+.. ++|+.|++++|.++.. ..+..+++|+.|++++|+++... .+..+++|+.|++++|.+++.
T Consensus 94 ~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKNLN--GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSCCT--TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCCcC--cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-
Confidence 99887532 2333 8899999999988874 35778899999999999988753 577889999999999998876
Q ss_pred HHHHHccCCCCceeccCC
Q 011708 389 VKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 389 ~~~~~~~~~L~~L~l~~~ 406 (479)
..+..+++|+.|++++|
T Consensus 166 -~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp -TTSTTCCCCCEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCC
Confidence 56778899999999998
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=5e-15 Score=142.71 Aligned_cols=188 Identities=18% Similarity=0.140 Sum_probs=131.1
Q ss_pred CCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeec
Q 011708 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINL 307 (479)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (479)
.+++.|+++++.+.... ..+ +++|+.|++++|.++. .+ ..+++|++|++++|.++.... +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp-~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLP-DNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCCC-SCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCccC-HhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence 48999999998887633 222 3689999999988873 23 457889999999888776322 433 8888888
Q ss_pred cCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChH
Q 011708 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387 (479)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 387 (479)
++|.++.... .+++|+.|++++|.++..+. .+++|+.|++++|.++..+. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 8887765222 56888888888888765332 46788888888888776443 33 7888888888887754
Q ss_pred HHHHHHccCCC-------CceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccC
Q 011708 388 GVKHIKDLSSL-------TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444 (479)
Q Consensus 388 ~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 444 (479)
+. +.. +| +.|++++| .++. ++..+..+++|+.|++++|++....+..+..+
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCREN-RITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC--CC----------CCEEEECCSS-CCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCC-ccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 33 322 55 78888887 6664 34455567788888888888777666665543
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=4.2e-15 Score=127.28 Aligned_cols=133 Identities=27% Similarity=0.284 Sum_probs=85.1
Q ss_pred CCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeec
Q 011708 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379 (479)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 379 (479)
++|+.|++++|.++...+..+..+++|++|++++|.+.......+..+++|+.|++++|.++..++..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 56777777777666555555666677777777777666555455566677777777777666655555566667777777
Q ss_pred cCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccc
Q 011708 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
++|.++.. +..+..+++|++|++++| .++......+..+++|+.|++++|++.
T Consensus 120 s~N~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLTEL-PRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCSC-CTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccccc-CcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 77666643 344456666666666666 555444445566666666666666654
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=4.9e-15 Score=142.81 Aligned_cols=189 Identities=20% Similarity=0.122 Sum_probs=147.8
Q ss_pred CCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEec
Q 011708 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283 (479)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 283 (479)
.+++.|+++++.+... +..+ .++|++|++++|.+.... ..+++|+.|++++|.++. .+. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 3899999999987653 3223 378999999999988543 557899999999998876 333 433 8999999
Q ss_pred cCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchh
Q 011708 284 DSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363 (479)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 363 (479)
++|.++.... .+++|+.|++++|.++.... .+++|+.|++++|.++..+. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 9998876322 67899999999998875322 57899999999999887443 43 8999999999998865
Q ss_pred hHHHHhcCCCC-------ceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCC
Q 011708 364 GAAYLRNFKNL-------RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421 (479)
Q Consensus 364 ~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 421 (479)
+. +.. +| +.|++++|.++.. +..+..+++|+.|++++| .++...+..+..++
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDN-PLSSRIRESLSQQT 254 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSS-SCCHHHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCC-cCCCcCHHHHHHhh
Confidence 44 322 66 9999999999975 445666999999999999 88888888876543
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=4e-15 Score=126.47 Aligned_cols=149 Identities=21% Similarity=0.231 Sum_probs=122.8
Q ss_pred cEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHH-HHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCC
Q 011708 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333 (479)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (479)
+.++++++.++.. |..+ .+.++.|++++|.+....+ ..+..+++|+.|++++|.++......+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5788888877642 2222 3467899999998876532 3467889999999999988876666788899999999999
Q ss_pred CCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCC
Q 011708 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 334 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (479)
|.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 9988877777888999999999999998877777888999999999999999887788888999999999998
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=5.3e-14 Score=119.49 Aligned_cols=87 Identities=24% Similarity=0.284 Sum_probs=31.5
Q ss_pred cCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcE
Q 011708 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256 (479)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 256 (479)
..+++|+.|++++|.++...+..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 53 ~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 33333444444333333332333333333333333333333222222333333333333333333333333333333333
Q ss_pred Eeccccc
Q 011708 257 LNLGFNE 263 (479)
Q Consensus 257 L~l~~~~ 263 (479)
|++++|.
T Consensus 133 L~L~~N~ 139 (220)
T 2v9t_B 133 LSLYDNK 139 (220)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 3333333
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=4.6e-15 Score=137.49 Aligned_cols=268 Identities=11% Similarity=0.124 Sum_probs=156.7
Q ss_pred CcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEE
Q 011708 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233 (479)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 233 (479)
+..++.+.+.+ .+......+|.++ +|+.+.+..+ +.......|.++ +|+.+.+.. .+.......|..|++|+.+
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 45666666663 3444455556554 5777776543 333333344443 466666554 2222223345555555555
Q ss_pred EccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCC
Q 011708 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGIS 313 (479)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 313 (479)
++..+.+......+|. +.+|+.+.+. .+ +.......|..+++|+.+.+..+ ++
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp------------------------~~-l~~I~~~aF~~~~~L~~l~l~~~-l~ 238 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLP------------------------VT-LKEIGSQAFLKTSQLKTIEIPEN-VS 238 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECC------------------------TT-CCEECTTTTTTCTTCCCEECCTT-CC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeC------------------------Cc-hheehhhHhhCCCCCCEEecCCC-cc
Confidence 5555544444433443 3445554444 22 33233334444555555555432 22
Q ss_pred HHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCc-----hhhHHHHhcCCCCceeeccCCccChHH
Q 011708 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-----DSGAAYLRNFKNLRSLEICGGGLTDAG 388 (479)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~ 388 (479)
.....+|.. .+|+.+.+.. .+...+..+|.+|++|+.+.+.++... ..+...|.+|++|+.+.+.+ .+....
T Consensus 239 ~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~ 315 (401)
T 4fdw_A 239 TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG 315 (401)
T ss_dssp EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC
T ss_pred Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh
Confidence 222233333 4566666633 344444556667777777777665443 34556677888888888874 466666
Q ss_pred HHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCc-cccccccccccccHH
Q 011708 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVTAN 460 (479)
Q Consensus 389 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~ 460 (479)
...|.+|++|+.+.+..+ ++.+...+|.+| +|+.+.+.++.........|..++ +++.|.+..+.+...
T Consensus 316 ~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y 385 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKY 385 (401)
T ss_dssp TTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHHH
T ss_pred hhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHHh
Confidence 677888888888888654 666667778888 899999998877776666777774 788888888775443
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=2.5e-14 Score=113.73 Aligned_cols=127 Identities=26% Similarity=0.270 Sum_probs=70.7
Q ss_pred CCCceeecCCCCCC-HHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCcee
Q 011708 324 SSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402 (479)
Q Consensus 324 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 402 (479)
++++.|++++|.+. ...+..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555444 11122234555666666666655543 3345556666666666666654444555566666666
Q ss_pred ccCCCCCCHH-HHHHHHcCCCCceeecCCCccchhhh---hhhccCccccccccc
Q 011708 403 LSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLE 453 (479)
Q Consensus 403 l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~ 453 (479)
+++| .++.. .+..+..+++|+.|++++|++...+. ..+..+++|+.|+++
T Consensus 95 ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666 45543 23455666666666666666655443 345666666666654
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=5e-16 Score=150.55 Aligned_cols=122 Identities=21% Similarity=0.257 Sum_probs=76.8
Q ss_pred CCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeec
Q 011708 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428 (479)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 428 (479)
.|+.|++++|.++..+. +..+++|+.|++++|.++.. +..+..+++|+.|++++| .++.. + .+.++++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N-~l~~l-p-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDN-ALENV-D-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCC-G-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCC-CCCCC-c-ccCCCCCCcEEEC
Confidence 46777777776665432 66667777777777776643 446666777777777777 55542 3 5667777777777
Q ss_pred CCCccchhh-hhhhccCccccccccccccccHHH--HHHhhhCCCCccccCC
Q 011708 429 SNSRITSAG-LRHLKPLKNLRSLTLESCKVTAND--IKRLQSRDLPNLVSFR 477 (479)
Q Consensus 429 ~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~p~L~~l~ 477 (479)
++|.+.... +..+..+++|+.|++++|+++... ...+. ..+|+|+.|+
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~-~~lp~L~~L~ 566 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA-EMLPSVSSIL 566 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH-HHCTTCSEEE
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHH-HHCcccCccC
Confidence 777776654 666777777777777777665431 11111 2456666553
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=5e-14 Score=130.51 Aligned_cols=264 Identities=9% Similarity=0.089 Sum_probs=133.3
Q ss_pred CCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcCccE
Q 011708 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159 (479)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (479)
+..++.+.+.. .++.....+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .........|.+|.+|+.
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 34555555543 2333344444443 4555555443 233333344442 355555543 122222234455555555
Q ss_pred EeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCC
Q 011708 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239 (479)
Q Consensus 160 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 239 (479)
+++.. +.+.......|. +.+|+.+.+..+ +.......|.++++|+.+.+..+ +......+|.. .+|+.+.+.. .
T Consensus 185 l~l~~-n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~ 258 (401)
T 4fdw_A 185 ADLSK-TKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G 258 (401)
T ss_dssp EECTT-SCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-T
T ss_pred eecCC-CcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-C
Confidence 55543 223323333333 355555555432 33333344555555555555442 22222223333 4566666632 3
Q ss_pred CChhhHHHHhcCCCCcEEecccccCC-----hHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCH
Q 011708 240 LSDDGCEKFSKIGSLKVLNLGFNEIT-----DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISD 314 (479)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 314 (479)
+......+|..+++|+.+.+.++... ......|.++++|+.+.+... +.......|.+|.+|+.+.+..+ ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 44444556666666666666554332 222344666777777777643 55445556667777777777443 444
Q ss_pred HHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCC-CCCEEEccCCC
Q 011708 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGAR 359 (479)
Q Consensus 315 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~ 359 (479)
....+|.++ +|+.+.+.++.........+.+++ .++.|.+..+.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 445556677 788888777665544444455553 57777776654
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=1.2e-14 Score=124.44 Aligned_cols=150 Identities=20% Similarity=0.135 Sum_probs=113.5
Q ss_pred CcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCC
Q 011708 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333 (479)
Q Consensus 254 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (479)
-+.++.+++.+... |. .-.++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~i-p~--~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASV-PA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSC-CS--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCcc-CC--CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45677766655432 11 1237888888888888776666777888888888888888765555567888888888888
Q ss_pred CCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCC
Q 011708 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407 (479)
Q Consensus 334 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (479)
|.++......+..+++|+.|++++|++... +..+..+++|+.|++++|.+.......+..+++|+.|++++|+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 888776666677788888888888888754 4456778888888888888887766667778888888888883
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=1.9e-14 Score=116.94 Aligned_cols=132 Identities=24% Similarity=0.248 Sum_probs=81.2
Q ss_pred CCCceeecCCCCCC-HHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCcee
Q 011708 324 SSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402 (479)
Q Consensus 324 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 402 (479)
++|+.|++++|.+. ...+..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55556666555554 11112234556666666666666554 3455666777777777766664455555567777777
Q ss_pred ccCCCCCCHHH-HHHHHcCCCCceeecCCCccchhhh---hhhccCcccccccccccccc
Q 011708 403 LSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 403 l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~l~ 458 (479)
+++| .++... +..+..+++|+.|++++|++..... ..+..+++|++|++++|.+.
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777 555432 2456667777777777777766554 45667777777777777653
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=7.1e-16 Score=149.48 Aligned_cols=197 Identities=19% Similarity=0.196 Sum_probs=152.4
Q ss_pred hcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCC-------------CChHHHHHhhCCCCCCeee-ccCCCCCH
Q 011708 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-------------IGDEGLVNLTGLTNLESIN-LSFTGISD 314 (479)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~ 314 (479)
..+++|+.|++++|.+. ..|..++.+++|+.|+++++. .....+..++.+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45788999999999885 668888889999999987653 3334455666777888887 45443322
Q ss_pred HHHH-----Hhh--CCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChH
Q 011708 315 GSLR-----KLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387 (479)
Q Consensus 315 ~~~~-----~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 387 (479)
.... .+. ....|+.|++++|.++..+ .+..+++|+.|++++|.++.. |..+..+++|+.|++++|.+++.
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp--~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCc--CccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCC
Confidence 1111 111 1246999999999988754 278899999999999999854 55788999999999999999985
Q ss_pred HHHHHHccCCCCceeccCCCCCCHHH-HHHHHcCCCCceeecCCCccchhhh---hhhccCcccccccc
Q 011708 388 GVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTL 452 (479)
Q Consensus 388 ~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l 452 (479)
+ .+..+++|++|++++| .++... +..+..+++|+.|++++|++...++ ..+..+|+|+.|++
T Consensus 502 p--~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 502 D--GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp G--GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred c--ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 3 7889999999999999 788765 7889999999999999999887644 22345889988853
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=1.2e-13 Score=109.70 Aligned_cols=127 Identities=24% Similarity=0.285 Sum_probs=56.4
Q ss_pred CCccEEeccCCCCC-hHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEE
Q 011708 276 TNLESLNLDSCGIG-DEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354 (479)
Q Consensus 276 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 354 (479)
++|+.|++++|.+. ...+..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+....+..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555443 12222334444555555555444432 3334445555555555544443333333445555555
Q ss_pred ccCCCCchhh-HHHHhcCCCCceeeccCCccChHHH---HHHHccCCCCceecc
Q 011708 355 LFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNLS 404 (479)
Q Consensus 355 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 404 (479)
+++|.++..+ +..+..+++|++|++++|.+++... ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555544432 2334444555555555554444332 234444444444443
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=1.4e-13 Score=112.68 Aligned_cols=135 Identities=17% Similarity=0.211 Sum_probs=88.2
Q ss_pred CCCCCceeecCCCCCCHHHHHHHhcC-CCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCc
Q 011708 322 GLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400 (479)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 400 (479)
.+++|+.|++++|.+... ..+..+ ++|+.|++++|.++.. ..+..+++|++|++++|.++...+..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 455666666666665542 122223 3777777777776654 34566777777777777777654455567777888
Q ss_pred eeccCCCCCCHHHH-HHHHcCCCCceeecCCCccchhhhh---hhccCccccccccccccccHHH
Q 011708 401 LNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLR---HLKPLKNLRSLTLESCKVTAND 461 (479)
Q Consensus 401 L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~l~~~~ 461 (479)
|++++| .+..... ..+..+++|+.|++++|++...... .+..+++|+.|++++|...+..
T Consensus 93 L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~ 156 (176)
T 1a9n_A 93 LILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ 156 (176)
T ss_dssp EECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred EECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHH
Confidence 888877 5554322 2567778888888888877654332 4677888888888888765543
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1e-12 Score=106.72 Aligned_cols=130 Identities=22% Similarity=0.223 Sum_probs=63.7
Q ss_pred CCCCcEEeccccccc-ccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCE
Q 011708 130 LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208 (479)
Q Consensus 130 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 208 (479)
.++|++|++++|... ...+..+..+++|++|++++|. +... ..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356777777765432 1333344566666666666643 3322 44555666666666666555433344444555555
Q ss_pred EEecCCCCCHHH-HHHHhCCCCCCEEEccCCCCChhhH---HHHhcCCCCcEEecccc
Q 011708 209 LNLEGCPVTAAC-LDSLSALGSLFYLNLNRCQLSDDGC---EKFSKIGSLKVLNLGFN 262 (479)
Q Consensus 209 L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~ 262 (479)
|++++|.+.... +..+..+++|++|++++|.+..... ..+..+++|+.|++++|
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 555555444321 1334444455555555444433322 23334444444444433
No 132
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.33 E-value=4.7e-13 Score=124.74 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=69.0
Q ss_pred HhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCC
Q 011708 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398 (479)
Q Consensus 319 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 398 (479)
+|..+..|+.+.+... +...+..++.+|+.|+.+.+.. .+...+..+|.+|.+|+.+.+.++ ++......|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 3445555666555433 2222334455566666666643 344444455666666776666542 444445566667777
Q ss_pred CceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCcccccccccccc
Q 011708 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456 (479)
Q Consensus 399 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 456 (479)
+.+.+..+ ++.+...+|.+|++|+.+++.++... ..++..+.+|+.+.+..+.
T Consensus 337 ~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 337 ERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred CEEEECcc--cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 77777543 55555666777777777777766422 1345566777777766554
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=2.5e-14 Score=119.58 Aligned_cols=133 Identities=23% Similarity=0.246 Sum_probs=95.5
Q ss_pred HhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCC
Q 011708 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398 (479)
Q Consensus 319 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 398 (479)
.+..+++|++|++++|.+...+ .+..+++|+.|++++|.++.. +..+..+++|++|++++|.+++.. .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence 5666777778887777666533 556678888888888877754 334455678888888888888753 56778888
Q ss_pred CceeccCCCCCCHHHH-HHHHcCCCCceeecCCCccchhhhh----------hhccCccccccccccccccH
Q 011708 399 TLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLR----------HLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 399 ~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~----------~l~~~~~L~~L~l~~~~l~~ 459 (479)
++|++++| .++.... ..+..+++|+.|++++|++....+. .+..+++|+.|+ +++++.
T Consensus 118 ~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 88888888 6665433 5677888888888888887665332 367788888886 666554
No 134
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=1e-12 Score=122.47 Aligned_cols=330 Identities=13% Similarity=0.113 Sum_probs=133.1
Q ss_pred hhhhccCC-CCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCC--CCCChhHHHHHhCCCCCcEEeccccccccccccc
Q 011708 74 LIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN--NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150 (479)
Q Consensus 74 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 150 (479)
..+|.+|+ .|+.+.+.. .++.++..+|.+|.+|+.+.+..+ ..+......+|.+|.+|+.+.+... ........
T Consensus 56 ~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred HhhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 34455553 366666654 245555555666666666655432 1123333444555555555555431 11222233
Q ss_pred ccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCC
Q 011708 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230 (479)
Q Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 230 (479)
+..+.+|+.+.+.. .........+..+..|+.+.+..+ +.......|.. .+|+.+.+...-. ......+..+.++
T Consensus 133 F~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l 207 (394)
T 4gt6_A 133 FHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFAL 207 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTC
T ss_pred hhhhcccccccccc--eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhcccc
Confidence 45555666655542 233333444555556665555432 22111222322 3455555543211 1111234444555
Q ss_pred CEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCC
Q 011708 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFT 310 (479)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (479)
.................+..........+ .+.....+..+.+... +.......|..+..|+.+.+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALI-----------RYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEE-----------ECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTT
T ss_pred ceecccccccccccceeeccccccccccc-----------ccccccccceEEcCCc-ceEcccceeeecccccEEecccc
Confidence 55444332211110000000000000000 0001112222222211 11111223444455555554322
Q ss_pred CCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHH
Q 011708 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390 (479)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 390 (479)
.......++.+++.|+.+.+.. .+...+..+|.+|.+|+.+.|..+ ++..+..+|.+|.+|+.+.+..+ ++.....
T Consensus 276 -~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 276 -VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp -CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred -cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHh
Confidence 1112223344555555555542 233333344555556666665432 33344445555666666666432 4444445
Q ss_pred HHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCC
Q 011708 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431 (479)
Q Consensus 391 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 431 (479)
.|.+|++|+.+++.++. .....+..+..|+.+.+..+
T Consensus 352 aF~~C~~L~~i~~~~~~----~~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSR----SQWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp GGTTCTTCCEEEESSCH----HHHHTCBCCCCC--------
T ss_pred HhhCCCCCCEEEECCce----eehhhhhccCCCCEEEeCCC
Confidence 55666666666665541 11233445555666655443
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=2e-13 Score=113.28 Aligned_cols=129 Identities=17% Similarity=0.233 Sum_probs=93.2
Q ss_pred CeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHH-HHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccC
Q 011708 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381 (479)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (479)
+.++++++.++... ..+ .++++.|++++|.+...... .+..+++|+.|++++|.++...+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCc-cCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777665422 111 24788888888877665443 366778888888888888776666777788888888888
Q ss_pred CccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccch
Q 011708 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 382 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 435 (479)
|.+++..+..+..+++|++|++++| .++...+..+..+++|+.|++++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 8887776666777788888888888 6776666667777888888888887653
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.30 E-value=1e-12 Score=107.65 Aligned_cols=130 Identities=19% Similarity=0.187 Sum_probs=77.7
Q ss_pred CCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccC
Q 011708 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381 (479)
Q Consensus 302 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (479)
.+.++++++.++... ....++|+.|+++++.+.......+..+++|++|++++|.++..++..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCC---TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCC---CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345666666554322 12235677777777666654444455666777777777766655555556666677777776
Q ss_pred CccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccch
Q 011708 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 382 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 435 (479)
|.+++..+..+..+++|++|++++| .++...+..+..+++|+.|++++|++..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6666655555556666666666666 5554444444556666666666666543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=1.6e-12 Score=106.24 Aligned_cols=108 Identities=25% Similarity=0.243 Sum_probs=44.7
Q ss_pred CCCCccEEeccCCCCChHHHHHhhC-CCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCE
Q 011708 274 GLTNLESLNLDSCGIGDEGLVNLTG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352 (479)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 352 (479)
.+++|+.|++++|.+... ..+.. .++|+.|++++|.++.. ..+..+++|++|++++|.+...+...+..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 344455555555444321 11211 22445555554444432 23334444444444444444332222334444455
Q ss_pred EEccCCCCchhhH-HHHhcCCCCceeeccCCccC
Q 011708 353 LDLFGARITDSGA-AYLRNFKNLRSLEICGGGLT 385 (479)
Q Consensus 353 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 385 (479)
|++++|.++..+. ..+..+++|+.|++++|.+.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 5554444443221 12334444444444444443
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=6.4e-13 Score=110.17 Aligned_cols=127 Identities=22% Similarity=0.236 Sum_probs=87.1
Q ss_pred CeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCC
Q 011708 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382 (479)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 382 (479)
+.++++++.++... .. -.++++.|++++|.++..+ ..+..+++|+.|++++|.++...+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip-~~--~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KG--IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCC-SC--CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCC-CC--CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45677666655422 11 2357778888877776543 45667777888888877777766666777777777777777
Q ss_pred ccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccc
Q 011708 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 383 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
.++...+..+..+++|++|++++| .++......+..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 777766666777777777777777 566555555667777777777777653
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=1.3e-13 Score=115.12 Aligned_cols=129 Identities=26% Similarity=0.260 Sum_probs=104.1
Q ss_pred HHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCC
Q 011708 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422 (479)
Q Consensus 343 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 422 (479)
.+..+++|+.|++++|.++..+ .+..+++|++|++++|.++.. +..+..+++|++|++++| .++.. + .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N-~l~~l-~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYN-QIASL-S-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEE-ECCCH-H-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCC-cCCcC-C-ccccCCC
Confidence 6778999999999999888753 678899999999999998865 445566789999999999 77764 3 6888999
Q ss_pred CceeecCCCccchhhh-hhhccCccccccccccccccHHHH--------HHhhhCCCCccccCC
Q 011708 423 LVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTANDI--------KRLQSRDLPNLVSFR 477 (479)
Q Consensus 423 L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~--------~~~~~~~~p~L~~l~ 477 (479)
|+.|++++|.+...+. ..+..+++|++|++++|+++.... ....-..+|+|+.|+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999999988654 678899999999999999865421 111124788888775
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.21 E-value=4.3e-12 Score=103.89 Aligned_cols=126 Identities=18% Similarity=0.166 Sum_probs=83.7
Q ss_pred ccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccC
Q 011708 278 LESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357 (479)
Q Consensus 278 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 357 (479)
.+.++++++.+.... ....++|+.|+++++.++......+..+++|++|++++|.++......+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCC---TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCC---CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 355666666554322 11235677777777776654444556677777777777777665555556677777777777
Q ss_pred CCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCC
Q 011708 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 358 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (479)
|.++..++..+..+++|++|++++|.++......+..+++|++|++++|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 7777665555667777777777777777665555566777777777777
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=2.9e-12 Score=106.22 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=100.5
Q ss_pred cEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCC
Q 011708 279 ESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358 (479)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 358 (479)
+.++++++.+.... .. -.++|+.|++++|.++... ..+..+++|+.|++++|.++......+.++++|+.|++++|
T Consensus 13 ~~l~~~~~~l~~ip-~~--~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KG--IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCC-SC--CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCC-CC--CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56777777665432 11 2368999999999887533 56788899999999999888877777888899999999999
Q ss_pred CCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCC
Q 011708 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 359 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (479)
.++...+..+..+++|+.|++++|.++......+..+++|+.|++++|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 998877777888999999999999998877767888899999999988
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.19 E-value=8.7e-13 Score=132.04 Aligned_cols=111 Identities=20% Similarity=0.151 Sum_probs=44.6
Q ss_pred HHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCC
Q 011708 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNL 302 (479)
Q Consensus 223 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 302 (479)
.+..+++|+.|++++|.+.... ..+..+++|+.|++++|.++ ..+..+..+++|+.|+|++|.+. ..+..+..+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 3444455555555555444222 22224444555555444444 22333444444444444444443 122333344444
Q ss_pred CeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCC
Q 011708 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337 (479)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (479)
+.|++++|.++.. +..+..+++|+.|++++|.+.
T Consensus 296 ~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 296 KYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCC
T ss_pred CEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccC
Confidence 4444444433321 122333344444444444433
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.19 E-value=1.8e-12 Score=129.71 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=48.0
Q ss_pred HHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHHHHHhhCCCCC
Q 011708 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGSLRKLAGLSSL 326 (479)
Q Consensus 247 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 326 (479)
.+..++.|+.|++++|.+.. .+..+..+++|++|+|++|.++ ..+..+..+++|+.|++++|.++. .+..+..+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L 295 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQL 295 (727)
T ss_dssp ---CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCC
Confidence 34444455555555544431 1222234444555555544444 222334444444555554444442 23334444444
Q ss_pred ceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhH
Q 011708 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365 (479)
Q Consensus 327 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 365 (479)
++|++++|.+...+ ..+..+++|+.|+|++|.++...+
T Consensus 296 ~~L~L~~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 296 KYFYFFDNMVTTLP-WEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp SEEECCSSCCCCCC-SSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CEEECCCCCCCccC-hhhhcCCCccEEeCCCCccCCCCh
Confidence 44444444443221 123444444444444444444333
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=2.4e-11 Score=100.74 Aligned_cols=86 Identities=24% Similarity=0.232 Sum_probs=34.5
Q ss_pred cCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcE
Q 011708 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256 (479)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 256 (479)
..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 33444444444444443333333344444444444444333332223333444444444444444333333333444444
Q ss_pred Eecccc
Q 011708 257 LNLGFN 262 (479)
Q Consensus 257 L~l~~~ 262 (479)
|++++|
T Consensus 131 L~L~~N 136 (192)
T 1w8a_A 131 LNLASN 136 (192)
T ss_dssp EECTTC
T ss_pred EEeCCC
Confidence 444443
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.14 E-value=7.1e-11 Score=93.83 Aligned_cols=89 Identities=21% Similarity=0.331 Sum_probs=72.2
Q ss_pred CccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCC----CCCcEEEcCCCCCCChhHHHHHhCCCCC
Q 011708 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL----SNLTSLSFRRNNAITAQGMKAFAGLINL 133 (479)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~~~~~~~~~~~~~l~~L 133 (479)
.|+.|+++++.+++.....+.+|++|++|+|++|..+++.+...+..+ ++|++|++++|..+++.+...+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 588888888888888888888888888888888888888888888764 4788888888877888888888888888
Q ss_pred cEEeccccccccc
Q 011708 134 VKLDLERCTRIHG 146 (479)
Q Consensus 134 ~~L~l~~~~~~~~ 146 (479)
++|++++|..+..
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 8888888765543
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.14 E-value=3.9e-11 Score=95.33 Aligned_cols=101 Identities=20% Similarity=0.417 Sum_probs=59.5
Q ss_pred CCceeeccCCccChHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcC----CCCceeecCCCc-cchhhhhhhccCccc
Q 011708 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNSR-ITSAGLRHLKPLKNL 447 (479)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l----~~L~~L~l~~~~-~~~~~~~~l~~~~~L 447 (479)
.|+.|++++|.+++.....+..+++|++|++++|..+++.....+..+ ++|++|++++|. +++.+...+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 455566655555555555555566666666666666666666666543 356666666663 666666666666667
Q ss_pred ccccccccc-ccHHH--HHHhhhCCCCccc
Q 011708 448 RSLTLESCK-VTAND--IKRLQSRDLPNLV 474 (479)
Q Consensus 448 ~~L~l~~~~-l~~~~--~~~~~~~~~p~L~ 474 (479)
++|++++|+ ++..+ ...+. +.+|+++
T Consensus 142 ~~L~L~~c~~Itd~gl~~~~L~-~~lP~l~ 170 (176)
T 3e4g_A 142 KYLFLSDLPGVKEKEKIVQAFK-TSLPSLE 170 (176)
T ss_dssp CEEEEESCTTCCCHHHHHHHHH-HHCTTCE
T ss_pred CEEECCCCCCCCchHHHHHHHH-HHCCCcE
Confidence 777776663 55433 23333 4556543
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.08 E-value=1e-10 Score=108.38 Aligned_cols=311 Identities=15% Similarity=0.153 Sum_probs=155.8
Q ss_pred CCccEEEecCCCCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEE
Q 011708 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
.+++.+.+... ++.....+|.+|.+|+.++|.. .++..+..+|..| +|+.+.+..+ +......+|..+ +|+.+
T Consensus 46 ~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~-~L~~i 118 (379)
T 4h09_A 46 DRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGT-DLDDF 118 (379)
T ss_dssp GGCSEEEECTT-EEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTC-CCSEE
T ss_pred cCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCce--eeEeccceeccC-Ccccc
Confidence 45677766542 4555556677777777777754 3555555666666 4666655543 233333344443 57777
Q ss_pred ecccccccccccccccCCcCccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCC
Q 011708 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 216 (479)
.+... ........+.++ +++.+.+.. .+.......+..+..++.+.+.............. .......
T Consensus 119 ~lp~~-~~~i~~~~F~~~-~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~------- 186 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNS-SVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNKNKTI------- 186 (379)
T ss_dssp ECCTT-CCEECTTTTTTC-CCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EETTSSE-------
T ss_pred cCCCc-cccccccccccc-eeeeeeccc--eeeccccchhcccccccccccccccceeeccccee-cccccce-------
Confidence 66542 222222233333 344444432 23333444455566666665543221100000000 0000000
Q ss_pred CHHHHHHHhCCCCCCEEEccCCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHh
Q 011708 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 296 (479)
...+..+..+..+.+... ........+..+.+++.+.+..+ +.......+..+..|+.+.+..+ +.......+
T Consensus 187 ----~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF 259 (379)
T 4h09_A 187 ----LESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLL 259 (379)
T ss_dssp ----EEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTT
T ss_pred ----eccccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccc
Confidence 001122233444433322 11122233444555666655432 22222233455666666666544 333334455
Q ss_pred hCCCCCCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCce
Q 011708 297 TGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376 (479)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 376 (479)
..+.+|+.+.+... +.......+..|++|+.+.+.++.++..+..+|.+|.+|+.+.+..+ ++..+..+|.+|.+|+.
T Consensus 260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST 337 (379)
T ss_dssp TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred ceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence 66667777766432 33333445667777777777766666666666777778888877643 55555666777788888
Q ss_pred eeccCCccChHHHHHHHccC
Q 011708 377 LEICGGGLTDAGVKHIKDLS 396 (479)
Q Consensus 377 L~l~~~~~~~~~~~~~~~~~ 396 (479)
+.+..+ ++......|.+++
T Consensus 338 i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 338 ISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCCCTT-CCEECTTTTTTSS
T ss_pred EEECCc-cCEEchhHhhCCC
Confidence 777543 4444444555553
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.08 E-value=4.5e-11 Score=110.85 Aligned_cols=315 Identities=15% Similarity=0.130 Sum_probs=140.5
Q ss_pred hccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEecccccccccccccccCCcC
Q 011708 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156 (479)
Q Consensus 77 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 156 (479)
+....+|+.+.+.. .++.++..+|.+|.+|+.+.++.+ ++.....+|.++ +|+.+.+... .......++..+ +
T Consensus 42 ~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D 114 (379)
T ss_dssp GGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred cccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence 45567888888875 467777777888888888888754 445555666666 5666655432 111122233333 5
Q ss_pred ccEEeccCCCCCCccccccccCCCCCcEEEccCCccchHhHHHhhcCCCCCEEEecCCCCCHHHHHHHhCCCCCCEEEcc
Q 011708 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236 (479)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 236 (479)
|+.+.+.. .+.......+.++ +++.+.+..+ ++......+..+..++...+............. ...
T Consensus 115 L~~i~lp~--~~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~---------~~~ 181 (379)
T 4h09_A 115 LDDFEFPG--ATTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV---------LYN 181 (379)
T ss_dssp CSEEECCT--TCCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE---------EEE
T ss_pred cccccCCC--ccccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccce---------ecc
Confidence 66666653 2222233333333 3444443321 111112223333444444333221100000000 000
Q ss_pred CCCCChhhHHHHhcCCCCcEEecccccCChHHHHHhcCCCCccEEeccCCCCChHHHHHhhCCCCCCeeeccCCCCCHHH
Q 011708 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLTNLESINLSFTGISDGS 316 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 316 (479)
. .......+.....+..+.+.... .......+..+.+|+.+.+... +... .
T Consensus 182 ~---~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i------------------------~ 232 (379)
T 4h09_A 182 K---NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTL------------------------G 232 (379)
T ss_dssp T---TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEE------------------------C
T ss_pred c---ccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEE------------------------c
Confidence 0 00000011122233333332211 0011112233344444444322 1112 2
Q ss_pred HHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccC
Q 011708 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396 (479)
Q Consensus 317 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 396 (479)
...+..+..|+.+.+..+ ++..+...+..+.+|+.+.+... +...+...+..|++|+.+.+.++.++......|.+|.
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 223344455555555432 33333334445555555555432 3333334455556666666655555554455555666
Q ss_pred CCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccchhhhhhhccCc
Q 011708 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445 (479)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 445 (479)
+|+.+.+..+ ++.+...+|.+|++|+.+.+..+ +..++..+|..|+
T Consensus 311 ~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 311 KLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 6666666442 44444555666666666666543 4445555565554
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=3.9e-11 Score=97.12 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=72.4
Q ss_pred CceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccC
Q 011708 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405 (479)
Q Consensus 326 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 405 (479)
.+.++++++.++..+.. -.+.|+.|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~---~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG---IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCcc---CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45677777766553321 135677777777777776666667777777777777777776666666777777777777
Q ss_pred CCCCCHHHHHHHHcCCCCceeecCCCccch
Q 011708 406 NCNLTDKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 406 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 435 (479)
| .++...+..+..+++|+.|++++|++..
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7 6665555556677777777777776643
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=1.7e-09 Score=98.31 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=30.9
Q ss_pred CCCCceeeccCCccChHHHHHHH---ccCCCCceeccCCCCCCHHHHHHH----HcCCCCceeecCCCccchhhhhhh
Q 011708 371 FKNLRSLEICGGGLTDAGVKHIK---DLSSLTLLNLSQNCNLTDKTLELI----SGLTGLVSLNVSNSRITSAGLRHL 441 (479)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~l 441 (479)
+|+|+.|.+.+|.+.+.....+. .+++|++|+|+.| .+.+.....+ ..+++|+.|++++|.+++.+.+.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l 327 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence 44455555544444433222222 2345555555544 4444332222 234555555555555555444443
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=7.2e-11 Score=95.87 Aligned_cols=105 Identities=20% Similarity=0.209 Sum_probs=72.6
Q ss_pred ceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccCC
Q 011708 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 327 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (479)
+.++++++.+...+.. + .++|+.|++++|.+....+..+..+++|++|++++|.++......+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~-~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCC-c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 5677777666543321 1 267788888888777766666777778888888887777765555667777788888777
Q ss_pred CCCCHHHHHHHHcCCCCceeecCCCccch
Q 011708 407 CNLTDKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 407 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 435 (479)
.++...+..+..+++|+.|++++|++..
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 6665555556777777777777777654
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=4e-09 Score=95.78 Aligned_cols=83 Identities=23% Similarity=0.409 Sum_probs=44.5
Q ss_pred CCCCCEEEccCCCCchhhHHHH---hcCCCCceeeccCCccChHHHHHH----HccCCCCceeccCCCCCCHHHHHHHHc
Q 011708 347 LTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTLELISG 419 (479)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~l~~ 419 (479)
+|+|+.|++.+|.+.+.....+ ..+|+|++|+++.|.+.+.....+ ..+++|+.|++++| .+++.....+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~ 329 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQK 329 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHH
Confidence 4556666665555554333333 134566666666666655443332 33466777777666 566655555543
Q ss_pred -CCCCceeecCCCc
Q 011708 420 -LTGLVSLNVSNSR 432 (479)
Q Consensus 420 -l~~L~~L~l~~~~ 432 (479)
+ ..+++++++.
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 3 3455666554
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.96 E-value=8.3e-09 Score=84.52 Aligned_cols=70 Identities=23% Similarity=0.244 Sum_probs=37.1
Q ss_pred HHhhCCCCCceeecCCC-CCCHHHHHHH----hcCCCCCEEEccCCCCchhhHHHH----hcCCCCceeeccCCccChH
Q 011708 318 RKLAGLSSLKSLNLDAR-QITDTGLAAL----TSLTGLTHLDLFGARITDSGAAYL----RNFKNLRSLEICGGGLTDA 387 (479)
Q Consensus 318 ~~l~~~~~L~~L~l~~~-~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~ 387 (479)
..+...+.|++|++++| .+.+.+...+ ...++|++|++++|.+.+.+...+ ...++|++|++++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 33445666666666666 6666554333 344566666666666655443222 3334555555555555444
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=1.6e-10 Score=93.48 Aligned_cols=102 Identities=24% Similarity=0.224 Sum_probs=81.8
Q ss_pred CCeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccC
Q 011708 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381 (479)
Q Consensus 302 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (479)
.+.++++++.++... ..+ .++|++|++++|.++...+..+..+++|+.|++++|+++..++..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467888888776532 112 37889999999888877667777888999999999988877776778888999999999
Q ss_pred CccChHHHHHHHccCCCCceeccCC
Q 011708 382 GGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 382 ~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (479)
|.++...+..+..+++|++|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 9888876667788889999999988
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=1.6e-08 Score=82.86 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=48.9
Q ss_pred hcCCCCCEEEccCC-CCchhhHHH----HhcCCCCceeeccCCccChHHHHHH----HccCCCCceeccCCCCCCHHHHH
Q 011708 345 TSLTGLTHLDLFGA-RITDSGAAY----LRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTLE 415 (479)
Q Consensus 345 ~~~~~L~~L~l~~~-~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~ 415 (479)
...+.|++|++++| .+.+.+... +...++|++|++++|.+.+.....+ ...++|++|+|++| .+.+....
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHH
Confidence 34444555555544 444332221 2333445555555554444332222 22244555555544 44443322
Q ss_pred H----HHcCCCCceeec--CCCccchhhhh----hhccCccccccccccccccHH
Q 011708 416 L----ISGLTGLVSLNV--SNSRITSAGLR----HLKPLKNLRSLTLESCKVTAN 460 (479)
Q Consensus 416 ~----l~~l~~L~~L~l--~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~~ 460 (479)
. +...++|++|++ ++|.+.+.+.. .+...++|++|++++|.+...
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 2 233344555555 44444443332 223334555555555554443
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=2.7e-10 Score=92.46 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=81.4
Q ss_pred CeeeccCCCCCHHHHHHhhCCCCCceeecCCCCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccCC
Q 011708 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382 (479)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 382 (479)
+.++++++.++... ..+ .++|+.|++++|.+....+..+..+++|+.|++++|+++..++..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP-~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVP-AGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccC-CCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888887765422 222 378999999999888776677788899999999999988876666778899999999999
Q ss_pred ccChHHHHHHHccCCCCceeccCC
Q 011708 383 GLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 383 ~~~~~~~~~~~~~~~L~~L~l~~~ 406 (479)
.++......+..+++|++|++++|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred ccceeCHHHhccccCCCEEEeCCC
Confidence 988876666788899999999998
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.71 E-value=5.2e-09 Score=95.65 Aligned_cols=103 Identities=24% Similarity=0.273 Sum_probs=69.1
Q ss_pred eeecCCC-CCCHHHHHHHhcCCCCCEEEccC-CCCchhhHHHHhcCCCCceeeccCCccChHHHHHHHccCCCCceeccC
Q 011708 328 SLNLDAR-QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405 (479)
Q Consensus 328 ~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 405 (479)
.++.+++ .++..+. +..+++|+.|+|++ |.+...++..+..+++|+.|++++|.+++..+..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 5555433 66667777777775 777766666677777777777777777777666677777777777777
Q ss_pred CCCCCHHHHHHHHcCCCCceeecCCCccc
Q 011708 406 NCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 406 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
| .++...+..+..++ |+.|++.+|++.
T Consensus 90 N-~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp S-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred C-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7 56654444444444 777777777654
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=1.8e-08 Score=92.00 Aligned_cols=103 Identities=20% Similarity=0.244 Sum_probs=86.1
Q ss_pred eeeccCC-CCCHHHHHHhhCCCCCceeecCC-CCCCHHHHHHHhcCCCCCEEEccCCCCchhhHHHHhcCCCCceeeccC
Q 011708 304 SINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381 (479)
Q Consensus 304 ~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (479)
.++.+++ .++.. +. +..+++|+.|++++ |.+.......|..+++|+.|+|++|+++...+..+..+++|+.|++++
T Consensus 12 ~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677776 67653 34 88889999999996 999887777788999999999999999988888889999999999999
Q ss_pred CccChHHHHHHHccCCCCceeccCCCCCC
Q 011708 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410 (479)
Q Consensus 382 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 410 (479)
|.++...+..+..++ |+.|++.+| .+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGN-PLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSS-CCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCC-Ccc
Confidence 999987666665555 999999999 454
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=1.6e-06 Score=74.44 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=17.2
Q ss_pred cCCCCceeeccCCccChHH--HHHHHccCCCCceeccCC
Q 011708 370 NFKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~ 406 (479)
.+++|+.|++++|.+++.. +..+..+++|+.|+|++|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 4455555555555554421 123334455555555554
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.05 E-value=0.00012 Score=59.22 Aligned_cols=111 Identities=17% Similarity=0.230 Sum_probs=56.3
Q ss_pred CCCCCceeecCCC-CCCHHHHHHH----hcCCCCCEEEccCCCCchhhHH----HHhcCCCCceeeccCCccChHHHHHH
Q 011708 322 GLSSLKSLNLDAR-QITDTGLAAL----TSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKHI 392 (479)
Q Consensus 322 ~~~~L~~L~l~~~-~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~ 392 (479)
.-+.|++|+++++ .+.+.+...+ ..-..|+.|+|++|.+.+.+.. .+..-+.|++|+++.|.+.+.+...+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455555555553 5554443322 3345566666666666554432 23344566666666666665554443
Q ss_pred Hc----cCCCCceeccCCC--CCCHH----HHHHHHcCCCCceeecCCCc
Q 011708 393 KD----LSSLTLLNLSQNC--NLTDK----TLELISGLTGLVSLNVSNSR 432 (479)
Q Consensus 393 ~~----~~~L~~L~l~~~~--~~~~~----~~~~l~~l~~L~~L~l~~~~ 432 (479)
.. -.+|++|+|+++. .+... +...+..-++|++|+++.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 32 3456666666542 23332 22334455566666665543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.03 E-value=0.00011 Score=59.53 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=38.7
Q ss_pred CCCceeecCCCCCCHHHHHHH----hcCCCCCEEEccCCCCchhhHHHH----hcCCCCceeeccCC---ccChHHH---
Q 011708 324 SSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARITDSGAAYL----RNFKNLRSLEICGG---GLTDAGV--- 389 (479)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~---~~~~~~~--- 389 (479)
..|+.|++++|.+.+.+...+ ..-+.|++|+|+.|.+++.+...+ ..-+.|++|+++++ .+.....
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 444444444444444433222 233455555555555554443322 33345666666533 3333222
Q ss_pred -HHHHccCCCCceeccCC
Q 011708 390 -KHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 390 -~~~~~~~~L~~L~l~~~ 406 (479)
..+..-++|++|+++.+
T Consensus 150 a~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHCSSCCEEECCCC
T ss_pred HHHHHhCCCcCeEeccCC
Confidence 23334466777776655
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.81 E-value=8.6e-05 Score=63.72 Aligned_cols=87 Identities=21% Similarity=0.259 Sum_probs=55.2
Q ss_pred HHHHhCCCCccEEEecCCCCChhh--hhhhccCCCCCeEeccCCCCCChh-hhHhhhCCCCCcEEEcCCCCCCC------
Q 011708 50 DVIASQGSSLLSVDLSGSDVTDSG--LIHLKDCSNLQSLDFNFCIQISDG-GLEHLRGLSNLTSLSFRRNNAIT------ 120 (479)
Q Consensus 50 ~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~------ 120 (479)
......+++|++|+|++|.+++.. +..+..+++|+.|+|+++ .+... ....+..+ +|++|++++|....
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHH
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcch
Confidence 344456788899999988887643 244567888888888884 45543 23333334 88888888875321
Q ss_pred hhHHHHHhCCCCCcEEec
Q 011708 121 AQGMKAFAGLINLVKLDL 138 (479)
Q Consensus 121 ~~~~~~~~~l~~L~~L~l 138 (479)
......+..+|+|+.|+=
T Consensus 241 ~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHCTTCCEESS
T ss_pred hHHHHHHHHCcccCeECC
Confidence 111234566777777653
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.25 E-value=0.048 Score=40.92 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=38.7
Q ss_pred eeeccCCccC--hHHHHHHHccCCCCceeccCCCCCCHHHHHHHHcCCCCceeecCCCccc
Q 011708 376 SLEICGGGLT--DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 376 ~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 434 (479)
.++.++..++ .. +..+ .++|++|+|++| .++......|..+++|+.|++.+|++.
T Consensus 12 ~v~Cs~~~L~~~~v-P~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASL-PTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTS-CSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccC-CCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555 33 2111 247899999998 787777777888889999999988764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.82 E-value=0.15 Score=38.14 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=13.5
Q ss_pred CceeeccCCccChHHHHHHHccCCCCceeccCC
Q 011708 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 374 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (479)
|+.|+|++|.++......|..+++|+.|+|.+|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 444444444444333333333444444444443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=85.20 E-value=0.51 Score=33.22 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=29.9
Q ss_pred CCChhhhhhhccCCCCCeEeccCCCCCChhhhHhhhCCCCCcEEEcCCC
Q 011708 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116 (479)
Q Consensus 68 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 116 (479)
.++.....+|.+|..|+.+.|.. .++.++..+|..|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 34545556677777777777765 355555666667777777766653
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.70 E-value=1 Score=31.62 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=26.5
Q ss_pred CChhhhHhhhCCCCCcEEEcCCCCCCChhHHHHHhCCCCCcEEeccc
Q 011708 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140 (479)
Q Consensus 94 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 140 (479)
++.+...+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 44444556666777777777654 3444455566666666666554
Done!