BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011709
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 178 bits (451), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 191/407 (46%), Gaps = 59/407 (14%)
Query: 37 QHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTD 94
+ ++++Y WK P LYD + H L WPSL+ +W P + + K+ RL L T
Sbjct: 14 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTS 73
Query: 95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKHKTIIHPGEVNRI 146
N LVIA+ ++ P A S ++ E + S ++ I H GEVNR
Sbjct: 74 DE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRA 130
Query: 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206
R +PQN I+AT T S DVL++D P++ G N PDL L GHQ + L+ P
Sbjct: 131 RYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQKEG-YGLSWNP 187
Query: 207 T-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265
++LS D ++ LW I PK +G
Sbjct: 188 NLSGHLLSASDDHTICLWD------------------------ISAVPK---------EG 214
Query: 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDA 324
V + I+ GH VEDV++ F SV DD L++WD R TS AH A
Sbjct: 215 KVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTA 274
Query: 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H + VQWSP
Sbjct: 275 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHN 329
Query: 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHS 430
++ SS D LN+WD K+G+ EQ P + P L F H GH+
Sbjct: 330 ETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHT 374
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 187/412 (45%), Gaps = 63/412 (15%)
Query: 34 TAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQT 93
T + ++++Y WK P LYD + H L WPSL+ +W P++ + K+ +L T
Sbjct: 13 TVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGT 72
Query: 94 DGS-VPNTLVIANCEVVKPRVAAAEHISQFN----EEARSPF---------VKKHKTIIH 139
S N LV+A RV +QF+ + + F ++ I H
Sbjct: 73 HTSDEQNHLVVA-------RVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINH 125
Query: 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAE 199
GEVNR R +PQN I+AT T S DVL++D P + G N PDL L GHQ
Sbjct: 126 EGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECN--PDLRLRGHQKEGY 183
Query: 200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGN 259
++LS D +V LW I +AG PK
Sbjct: 184 GLSWNSNLSGHLLSASDDHTVCLWDI---------------NAG---------PK----- 214
Query: 260 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKV 318
+G V + I+ GH VEDV + F SV DD L++WD R TS +
Sbjct: 215 ----EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHL 270
Query: 319 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378
AH A+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H + V
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHTFESHKDEIFQV 325
Query: 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS 430
WSP ++ SS D LN+WD K+G++ + + P L F H GH+
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHT 376
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 189/407 (46%), Gaps = 59/407 (14%)
Query: 37 QHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTD 94
+ ++++Y WK P LYD + H L WPSL+ +W P + + K+ RL L T
Sbjct: 18 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS 77
Query: 95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKHKTIIHPGEVNR 145
N L+IA+ ++ P A S ++ E + F ++ I H GEVNR
Sbjct: 78 DE-QNHLLIASVQL--PSEDAQFDGSHYDNE-KGEFGGFGSVCGKIEIEIKINHEGEVNR 133
Query: 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC 205
R +PQN ++AT T S DVL++D P++ G +PDL L GHQ + L+
Sbjct: 134 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG--ECQPDLRLRGHQKEG-YGLSWN 190
Query: 206 PT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264
P Y+LS D ++ LW I AT K +
Sbjct: 191 PNLNGYLLSASDDHTICLWDIN----------ATPK-----------------------E 217
Query: 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHD 323
+ + I+ GH VEDV + F SV DD L++WD R TS AH
Sbjct: 218 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277
Query: 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 383
A+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H + VQWSP
Sbjct: 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPH 332
Query: 384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS 430
++ SS D L++WD K+G++ + + P L F H GH+
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHT 378
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 189/407 (46%), Gaps = 59/407 (14%)
Query: 37 QHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTD 94
+ ++++Y WK P LYD + H L WPSL+ +W P + + K+ RL L T
Sbjct: 20 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS 79
Query: 95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKHKTIIHPGEVNR 145
N L+IA+ ++ P A S ++ E + F ++ I H GEVNR
Sbjct: 80 DE-QNHLLIASVQL--PSEDAQFDGSHYDNE-KGEFGGFGSVCGKIEIEIKINHEGEVNR 135
Query: 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC 205
R +PQN ++AT T S DVL++D P++ G +PDL L GHQ + L+
Sbjct: 136 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG--ECQPDLRLRGHQKEG-YGLSWN 192
Query: 206 PT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264
P Y+LS D ++ LW I AT K +
Sbjct: 193 PNLNGYLLSASDDHTICLWDIN----------ATPK-----------------------E 219
Query: 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHD 323
+ + I+ GH VEDV + F SV DD L++WD R TS AH
Sbjct: 220 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 279
Query: 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 383
A+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H + VQWSP
Sbjct: 280 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPH 334
Query: 384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS 430
++ SS D L++WD K+G++ + + P L F H GH+
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHT 380
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 189/407 (46%), Gaps = 59/407 (14%)
Query: 37 QHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTD 94
+ ++++Y WK P LYD + H L WPSL+ +W P + + K+ RL L T
Sbjct: 22 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS 81
Query: 95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKHKTIIHPGEVNR 145
N L+IA+ ++ P A S ++ E + F ++ I H GEVNR
Sbjct: 82 DE-QNHLLIASVQL--PSEDAQFDGSHYDNE-KGEFGGFGSVCGKIEIEIKINHEGEVNR 137
Query: 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC 205
R +PQN ++AT T S DVL++D P++ G +PDL L GHQ + L+
Sbjct: 138 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGEC--QPDLRLRGHQKEG-YGLSWN 194
Query: 206 PT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264
P Y+LS D ++ LW I AT K +
Sbjct: 195 PNLNGYLLSASDDHTICLWDIN----------ATPK-----------------------E 221
Query: 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHD 323
+ + I+ GH VEDV + F SV DD L++WD R TS AH
Sbjct: 222 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 281
Query: 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 383
A+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H + VQWSP
Sbjct: 282 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPH 336
Query: 384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS 430
++ SS D L++WD K+G++ + + P L F H GH+
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHT 382
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 185/412 (44%), Gaps = 63/412 (15%)
Query: 34 TAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQT 93
T + ++++Y WK P LYD + H L WPSL+ +W P++ + K+ +L T
Sbjct: 13 TVEERVINEEYKIWKKNTPFLYDLVXTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGT 72
Query: 94 DGS-VPNTLVIANCEVVKPRVAAAEHISQFN----EEARSPF---------VKKHKTIIH 139
S N LV+A RV +QF+ + + F ++ I H
Sbjct: 73 HTSDEQNHLVVA-------RVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINH 125
Query: 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAE 199
GEVNR R PQN I+AT T S DVL++D P + G N PDL L GHQ
Sbjct: 126 EGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECN--PDLRLRGHQKEGY 183
Query: 200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGN 259
++LS D +V LW I +AG PK
Sbjct: 184 GLSWNSNLSGHLLSASDDHTVCLWDI---------------NAG---------PK----- 214
Query: 260 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKV 318
+G V + I+ GH VEDV + F SV DD L +WD R TS +
Sbjct: 215 ----EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHL 270
Query: 319 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378
AH A+++C+ +NP + ++ TGSAD +V ++D RNL ++ FE H + V
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHTFESHKDEIFQV 325
Query: 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS 430
WSP ++ SS D LN+WD K+G++ + + P L F H GH+
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHT 376
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 117/280 (41%), Gaps = 53/280 (18%)
Query: 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213
K +AT + + IWD+E NR V+ IL GH+ + ++L P+ ++S
Sbjct: 136 KFLATGAEDRLIRIWDIE---NRKIVM---------ILQGHEQDI-YSLDYFPSGDKLVS 182
Query: 214 GGKDKSVVLW-----------SIQDHITSSATDPATAK--SAGSSGSIIKQ-SPKPGDGN 259
G D++V +W SI+D +T+ A P K +AGS ++ + G
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 260 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW---------DARV 310
++ G GH+D+V V F Q S D + LW D++
Sbjct: 243 ERLDSENESG-----TGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296
Query: 311 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370
S +V D +D IL+GS D V +D+++ G+P+ +G
Sbjct: 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS------GNPLLMLQG 350
Query: 371 HSAAVLCVQWSPDKS-----SVFGSSAEDGLLNIWDYEKV 405
H +V+ V + S +VF + + D IW Y+K+
Sbjct: 351 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 42/215 (19%)
Query: 150 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 209
P + K +A + V +WD E L + TGH+D+ +++
Sbjct: 216 PGDGKYIAAGSLDRAVRVWDSET-----GFLVERLDSENESGTGHKDSV-YSVVFTRDGQ 269
Query: 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 269
V+SG D+SV LW++Q+ A KS S P G +
Sbjct: 270 SVVSGSLDRSVKLWNLQN---------ANNKS---------DSKTPNSGTCEVT------ 305
Query: 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHC 328
Y GH+D V ++ + E+ G D ++ WD + G +P++ ++ ++ +
Sbjct: 306 ----YIGHKDFV--LSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISV 358
Query: 329 VDWNPL----DDNLILTGSADNSVRMFDRRNLTSN 359
N + N+ TGS D R++ + + N
Sbjct: 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKKIAPN 393
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 84 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 139
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 140 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 192
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 193 GLCRIWD 199
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 98 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 144
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 202
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 259
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 260 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 313
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 314 NIIASAALENDKTIKLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 86 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 141
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 142 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 194
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 195 GLCRIWD 201
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 100 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 146
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 204
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 261
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 262 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 315
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 316 NIIASAALENDKTIKLW 332
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 79 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 134
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 135 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 187
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 188 GLCRIWD 194
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 93 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 139
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 197
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 254
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 255 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 308
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 309 NIIASAALENDKTIKLW 325
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 62 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 117
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 118 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 170
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 171 GLCRIWD 177
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV + L GH N F P +
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHS-NYVFCCNFNPQSNLI 122
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 180
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 237
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 238 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 291
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 292 NIIASAALENDKTIKLW 308
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 63 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 118
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 119 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 171
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 172 GLCRIWD 178
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV + L GH N F P +
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHS-NYVFCCNFNPQSNLI 123
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 181
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 238
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 239 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 292
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 293 NIIASAALENDKTIKLW 309
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 79 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 125
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 183
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 240
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 294
Query: 385 SSVFGSSAED 394
+ + ++ E+
Sbjct: 295 NIIASAALEN 304
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 62 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 117
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 118 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 170
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 171 GLCRIWD 177
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 76 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 122
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 180
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 237
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 238 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 291
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 292 NIIASAALENDKTIKLW 308
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 68 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 177 GLCRIWD 183
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV + L GH N F P +
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHS-NYVFCCNFNPQSNLI 128
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 186
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 243
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 297
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 298 NIIASAALENDKTIKLW 314
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 68 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 177 GLCRIWD 183
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 82 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 128
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 186
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 243
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 297
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 298 NIIASAALENDKTIKLW 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 79 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 125
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 183
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 240
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 294
Query: 385 SSVFGSSAED 394
+ + ++ E+
Sbjct: 295 NIIASAALEN 304
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 79 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 125
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 183
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 240
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 294
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 295 NIIASAALENDKTIKLW 311
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 67 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 122
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 123 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 175
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 176 GLCRIWD 182
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 81 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 127
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 185
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 242
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 243 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 296
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 297 NIIASAALENDKTIKLW 313
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 58 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 113
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 114 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 166
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 167 GLCRIWD 173
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV + L GH N F P +
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHS-NYVFCCNFNPQSNLI 118
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 176
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 233
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 234 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 287
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 288 NIIASAALENDKTIKLW 304
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 68 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 177 GLCRIWD 183
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV ++ + L GH N F P +
Sbjct: 82 DSNLLVSASDDKTLKIWDV------------SSGKCLKTLKGHS-NYVFCCNFNPQSNLI 128
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 186
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 243
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 297
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 298 NIIASAALENDKTIKLW 314
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 61 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 116
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 117 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 169
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 170 GLCRIWD 176
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV + L GH N F P +
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHS-NYVFCCNFNPQSNLI 121
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 179
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 236
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 237 YCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 290
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 291 NIIASAALENDKTIKLW 307
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV + L GH N F P +
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHS-NYVFCCNFNPQSNLI 125
Query: 212 LSGGKDKSVVLWSIQDHITSSA----TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 183
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D+ L LWD G +K H +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDND-LKLWDYSKG--KCLKTYTGHKNEK 240
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 294
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 295 NIIASAALENDKTIKLW 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
+GH+ + DV + S + S DD L +WD V + +K K H + C ++NP
Sbjct: 65 SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
NLI++GS D SVR++D + G + HS V V ++ D S + SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 395 GLLNIWD 401
GL IWD
Sbjct: 174 GLCRIWD 180
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 32/257 (12%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
++ ++ + +D + IWDV + L GH N F P +
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHS-NYVFCCNFNPQSNLI 125
Query: 212 LSGGKDKSVVLWSIQDHITSSA----TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
+SG D+SV +W ++ + +DP +A GS+I S DG + D S
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTAS 183
Query: 268 -VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
+ + + V V F P+ + D++ L LWD G +K H +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKG--KCLKTYTGHKNEK 240
Query: 327 HCV--DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
+C+ +++ I++GS DN V ++ NL + + + K +GH+ V+ P +
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIW---NLQTKEI---VQKLQGHTDVVISTACHPTE 294
Query: 385 SSVFGSSAE-DGLLNIW 400
+ + ++ E D + +W
Sbjct: 295 NIIASAALENDKTIKLW 311
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 49/259 (18%)
Query: 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213
+ +A+ +D V +W NR+ L T LTGH + +A P + S
Sbjct: 357 QTIASASDDKTVKLW------NRNGQLLQT-------LTGHSSSVR-GVAFSPDGQTIAS 402
Query: 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGN-DKAADGPSVGPRG 272
DK+V LW+ + + T G S S+ + P D A+D +V
Sbjct: 403 ASDDKTVKLWNRNGQLLQTLT--------GHSSSVWGVAFSPDDQTIASASDDKTVK--- 451
Query: 273 IYN----------GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH 322
++N GH +V V F P Q S DD + LW+ R G +++ H
Sbjct: 452 LWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGH 507
Query: 323 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 382
+ + V ++P D I + S D +V++++R G + GHS++V V +SP
Sbjct: 508 SSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVAFSP 559
Query: 383 DKSSVFGSSAEDGLLNIWD 401
D ++ S++ D + +W+
Sbjct: 560 DGQTI-ASASSDKTVKLWN 577
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 51/260 (19%)
Query: 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213
+ +A+ +D V +W NR+ L T LTGH + + +A P + S
Sbjct: 152 QTIASASDDKTVKLW------NRNGQLLQT-------LTGHSSSV-WGVAFSPDGQTIAS 197
Query: 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND--KAADGPSVGPR 271
DK+V LW+ + + T G S S+ + P DG A+D +V
Sbjct: 198 ASDDKTVKLWNRNGQLLQTLT--------GHSSSVRGVAFSP-DGQTIASASDDKTVK-- 246
Query: 272 GIYN----------GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 321
++N GH +V V F P Q S DD + LW+ R G +++
Sbjct: 247 -LWNRNGQLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTG 301
Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
H + + V ++P D I + S D +V++++R G + GHS++V V +S
Sbjct: 302 HSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-------GQHLQTLTGHSSSVWGVAFS 353
Query: 382 PDKSSVFGSSAEDGLLNIWD 401
PD ++ S+++D + +W+
Sbjct: 354 PDGQTI-ASASDDKTVKLWN 372
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 123/282 (43%), Gaps = 52/282 (18%)
Query: 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL 191
++++ H V + P + + +A+ +D V +W NR+ L T L
Sbjct: 8 ERNRLEAHSSSVRGVAFSP-DGQTIASASDDKTVKLW------NRNGQLLQT-------L 53
Query: 192 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ 251
TGH + + +A P + S DK+V LW+ + + T G S S+
Sbjct: 54 TGHSSSV-WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSSVRGV 104
Query: 252 SPKPGDGND--KAADGPSVGPRGIYN----------GHEDTVEDVTFCPSSAQEFCSVGD 299
+ P DG A+D +V ++N GH +V V F P Q S D
Sbjct: 105 AFSP-DGQTIASASDDKTV---KLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASD 159
Query: 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 359
D + LW+ R G +++ H + + V ++P D I + S D +V++++R
Sbjct: 160 DKTVKLWN-RNG--QLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN----- 210
Query: 360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
G + GHS++V V +SPD ++ S+++D + +W+
Sbjct: 211 --GQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN 249
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH 327
V R H +V V F P Q S DD + LW+ R G +++ H + +
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGHSSSVW 61
Query: 328 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 387
V ++P D I + S D +V++++R G + GHS++V V +SPD ++
Sbjct: 62 GVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 388 FGSSAEDGLLNIWD 401
S+++D + +W+
Sbjct: 114 -ASASDDKTVKLWN 126
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 109/266 (40%), Gaps = 40/266 (15%)
Query: 169 DVEAQPNRHAVLGATNSRPDLI----LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW- 223
DVE + + DL+ L GH ++L P + +++S +D +++W
Sbjct: 36 DVEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKV-YSLDWTPEKNWIVSASQDGRLIVWN 94
Query: 224 --------SIQDH---ITSSATDPATAKSA----GSSGSIIKQSPKPG-DGNDKAADGPS 267
+I+ H + A P A S+ SI S + DGN +
Sbjct: 95 ALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSR--- 151
Query: 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI---KVEKAHDA 324
+ GH+ + P + D +LWD G I + H A
Sbjct: 152 -----VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA 206
Query: 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
D+ + N L+ N+ ++GS D +VR++D R +TS V + GH + V++ PD
Sbjct: 207 DVLSLSINSLNANMFISGSCDTTVRLWDLR-ITSRAV----RTYHGHEGDINSVKFFPDG 261
Query: 385 SSVFGSSAEDGLLNIWDYEKVGKKVE 410
FG+ ++DG ++D + G +++
Sbjct: 262 QR-FGTGSDDGTCRLFDM-RTGHQLQ 285
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 87/215 (40%), Gaps = 23/215 (10%)
Query: 190 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD---PATAKSAGSSG 246
ILTGH + L + E +++G D +V +W + + A ++G
Sbjct: 168 ILTGHTGSV---LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 224
Query: 247 SIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 306
++ S A + R + GH V V F + S D + +W
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVW 281
Query: 307 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366
+ T ++ H + C+ + D L+++GS+DN++R++D G+ +
Sbjct: 282 NT--STCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIE------CGACLR 330
Query: 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
EGH V C+++ + S A DG + +WD
Sbjct: 331 VLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWD 362
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Query: 326 LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS 385
++C+ + DD I++G DN+++++D+ L + GH+ +VLC+Q+ ++
Sbjct: 136 VYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRI------LTGHTGSVLCLQYD-ERV 185
Query: 386 SVFGSSAEDGLLNIWD 401
+ GSS D + +WD
Sbjct: 186 IITGSS--DSTVRVWD 199
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 351
Q+ S D+ + +WD T ++ H + C+ + D+ +I+TGS+D++VR++
Sbjct: 144 QKIVSGLRDNTIKIWDK--NTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVW 198
Query: 352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
D G +N H AVL ++++ + + + ++D + +WD
Sbjct: 199 D------VNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWD 239
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 333
+ GH V V F P + Q S G D+ L +W+ + G AH + CV ++P
Sbjct: 105 FLGHTKDVLSVAFSPDNRQ-IVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSP 162
Query: 334 -LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 392
LD +I++G DN V+++D G + +GH+ V V SPD S+ SS
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDL------ATGRLVTDLKGHTNYVTSVTVSPD-GSLCASSD 215
Query: 393 EDGLLNIWDYEK 404
+DG+ +WD K
Sbjct: 216 KDGVARLWDLTK 227
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 337 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL 396
N ++ S D+S+R+++ +N G KF GH+ VL V +SPD + S D
Sbjct: 80 NFAVSASWDHSLRLWNLQN------GQCQYKFLGHTKDVLSVAFSPDNRQIV-SGGRDNA 132
Query: 397 LNIWDYE 403
L +W+ +
Sbjct: 133 LRVWNVK 139
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 201 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 260
++A+ PT+PYVLSG D +V LW+ +++ T
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 261 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320
+ GHE V V F P F S D + +W T P +
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 321 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379
+ ++ VD+ PL D ++T S D +++++D + S + EGH + V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAV 235
Query: 380 WSPDKSSVFGSSAEDGLLNIWD 401
+ P + S +EDG L IW+
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWN 256
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 14/203 (6%)
Query: 206 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK---A 262
PTEP+VL+ V LW+ + + + ++ +G I + G+D
Sbjct: 23 PTEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 263 ADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 321
+ G + + + H D + + P+ S DD + LW+ + + +
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE-NNWALEQTFEG 138
Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
H+ + CV +NP D + +G D +V+++ T N + G V V +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERGVNYVDYY 193
Query: 382 PDKSSVFGSSAEDGL-LNIWDYE 403
P + +A D L + IWDY+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQ 216
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 201 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 260
++A+ PT+PYVLSG D +V LW+ +++ T
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 261 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320
+ GHE V V F P F S D + +W T P +
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 321 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379
+ ++ VD+ PL D ++T S D +++++D + S + EGH + V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAV 235
Query: 380 WSPDKSSVFGSSAEDGLLNIWD 401
+ P + S +EDG L IW+
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWN 256
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 14/203 (6%)
Query: 206 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK---A 262
PTEP+VL+ V LW+ + + + ++ +G I + G+D
Sbjct: 23 PTEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 263 ADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 321
+ G + + + H D + + P+ S DD + LW+ + + +
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE-NNWALEQTFEG 138
Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
H+ + CV +NP D + +G D +V+++ T N + G V V +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERGVNYVDYY 193
Query: 382 PDKSSVFGSSAEDGL-LNIWDYE 403
P + +A D L + IWDY+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQ 216
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 201 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 260
++A+ PT+PYVLSG D +V LW+ +++ T
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 261 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320
+ GHE V V F P F S D + +W T P +
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 321 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379
+ ++ VD+ PL D ++T S D +++++D + S + EGH + V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAV 235
Query: 380 WSPDKSSVFGSSAEDGLLNIWD 401
+ P + S +EDG L IW+
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWN 256
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 14/203 (6%)
Query: 206 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK---A 262
PTEP+VL+ V LW+ + + + ++ +G I + G+D
Sbjct: 23 PTEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 263 ADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 321
+ G + + + H D + + P+ S DD + LW+ + + +
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE-NNWALEQTFEG 138
Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
H+ + CV +NP D + +G D +V+++ T N G V V +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN-----FTLTTGQERGVNYVDYY 193
Query: 382 PDKSSVFGSSAEDGL-LNIWDYE 403
P + +A D L + IWDY+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQ 216
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 201 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 260
++A+ PT+PYVLSG D +V LW+ +++ T
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 261 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320
+ GHE V V F P F S D + +W T P +
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 321 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379
+ ++ VD+ PL D ++T S D +++++D + S + EGH + V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAV 235
Query: 380 WSPDKSSVFGSSAEDGLLNIWD 401
+ P + S +EDG L IW+
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWN 256
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 14/203 (6%)
Query: 206 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK---A 262
PTEP+VL+ V +W+ + + + ++ +G I + G+D
Sbjct: 23 PTEPWVLTTLYSGRVEIWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 263 ADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 321
+ G + + + H D + + P+ S DD + LW+ + + +
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE-NNWALEQTFEG 138
Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
H+ + CV +NP D + +G D +V+++ T N + G V V +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-----GQERGVNYVDYY 193
Query: 382 PDKSSVFGSSAEDGL-LNIWDYE 403
P + +A D L + IWDY+
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQ 216
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 40/198 (20%)
Query: 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 269
Y+LSGG D +VL+ +++ SS T K+ S G D P V
Sbjct: 58 YMLSGGSDGVIVLYDLEN---SSRQSYYTCKAVCSIGR----------------DHPDV- 97
Query: 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHC 328
H +VE V + P F S D L +WD + T+ V E+ ++
Sbjct: 98 -------HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET----VYS 146
Query: 329 VDWNPLDDN--LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 386
+P+ L+ G+ V++ D ++ GS + +GH +L V WSP
Sbjct: 147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKS------GSCSHILQGHRQEILAVSWSPRYDY 200
Query: 387 VFGSSAEDGLLNIWDYEK 404
+ +++ D + +WD +
Sbjct: 201 ILATASADSRVKLWDVRR 218
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 318 VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN-----------LTSNGVGSPIN 366
VE+ H ++ +D P++ +L+G +D + ++D N + S G P
Sbjct: 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP-- 95
Query: 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
+ H +V VQW P + +F SS+ D L +WD
Sbjct: 96 --DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 13/154 (8%)
Query: 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHD-ADLHC 328
R I N T+ VTF + E +V L +WD R G P + D LHC
Sbjct: 184 RTIDNADSSTLHAVTFLRTP--EILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHC 241
Query: 329 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 388
VD +P +++ TG D + ++D R T P++ + H A + V + P
Sbjct: 242 VDRHPNQQHVVATGGQDGMLSIWDVRQGT-----MPVSLLKAHEAEMWEVHFHPSNPEHL 296
Query: 389 GSSAEDGLLNIWDYE----KVGKKVEQGPRTTNY 418
+ +EDG L WD + QG R++ +
Sbjct: 297 FTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTF 330
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352
E +VG+D + L+ A V ++ A + LH V + L ILT ++ ++++D
Sbjct: 162 EIVTVGEDGRINLFRAD-HKEAVRTIDNADSSTLHAVTF--LRTPEILTVNSIGQLKIWD 218
Query: 353 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404
R S I G + CV P++ V + +DG+L+IWD +
Sbjct: 219 FRQ--QGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQ 268
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 13/159 (8%)
Query: 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---HDADLHC 328
G G + V F PS S DD+ + +++ P K + H +H
Sbjct: 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-----PPFKFKSTFGEHTKFVHS 195
Query: 329 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSV 387
V +NP D +L + D ++ +++ + T GV + K HS +V + WSPD + +
Sbjct: 196 VRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254
Query: 388 FGSSAEDGLLNIWDYE--KVGKKVEQGPRTTNYPAGLFF 424
+SA D + IW+ KV K + G R + G+ +
Sbjct: 255 ASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 45/180 (25%)
Query: 264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--- 320
+GP + + H V V + P + F S G D ++L++ GT + +
Sbjct: 176 EGPPFKFKSTFGEHTKFVHSVRYNPDGSL-FASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234
Query: 321 --AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL---------------------- 356
AH + + W+P D I + SAD ++++++ L
Sbjct: 235 NVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 293
Query: 357 -------TSNG--------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
++NG +GS GH+ A+ + S D ++F + AE G +N WD
Sbjct: 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE-GHINSWD 352
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404
N + H+A V CV WSPD + S ++ ++ +W+ K
Sbjct: 530 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVI-VWNMNK 567
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFD 352
H A + CV W+P D+ + TGS DNSV +++
Sbjct: 535 HTAKVACVSWSP-DNVRLATGSLDNSVIVWN 564
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 316 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK----FEGH 371
+ + H A + + W P +DN+I +GS D +V +++ + G+ P+ + EGH
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE---IPDGGLVLPLREPVITLEGH 130
Query: 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 413
+ V V W P +V S+ D ++ +WD + GP
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP 172
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
GH V V + P++ S G D+ +++WD G + + H ++ VDW+
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS-R 186
Query: 335 DDNLILTGSADNSVRMFDRRNLT 357
D LI T D VR+ + R T
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGT 209
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG------TSPVIKVEKAHDADL 326
+ GH V D+ + P + S +D +++W+ G PVI +E H +
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRV 134
Query: 327 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF--EGHSAAVLCVQWSPDK 384
V W+P N++L+ DN + ++D G G+ + + H + V WS D
Sbjct: 135 GIVAWHPTAQNVLLSAGXDNVILVWD------VGTGAAVLTLGPDVHPDTIYSVDWSRDG 188
Query: 385 SSV 387
+ +
Sbjct: 189 ALI 191
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 198
H V I P N ++A+ ++ V++W++ P+ VL P + L GH
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEI---PDGGLVLPLRE--PVITLEGHTKRV 134
Query: 199 EFALAMCPTEPYVLSGGKDKSVVLWSI 225
+ +LS G D +++W +
Sbjct: 135 GIVAWHPTAQNVLLSAGXDNVILVWDV 161
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD 336
H+D V V+ S Q S D C+ +WD + V+ +AH A + CV +P D
Sbjct: 126 HDDIVSTVSVLSSGTQAV-SGSKDICIKVWD--LAQQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 337 NLILTGSADNSVRMFDRRN-LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 395
++ L+ S DN + ++D R ++ +G + S A W P +S VF E+G
Sbjct: 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA-----WHPQQSEVFVFGDENG 237
Query: 396 LLNIWD 401
+++ D
Sbjct: 238 TVSLVD 243
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL-HCVDWN 332
Y H V V P F S +D+ ++LWD R P ++ + L + W+
Sbjct: 165 YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCSAPGYLPTSLAWH 223
Query: 333 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 392
P + + G + +V + D ++ TS + S + HS V + +SP S +
Sbjct: 224 PQQSEVFVFGDENGTVSLVDTKS-TSCVLSSAV-----HSQCVTGLVFSPHSVPFLASLS 277
Query: 393 EDGLLNIWD 401
ED L + D
Sbjct: 278 EDCSLAVLD 286
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 276 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
GHE V V + P S D +++W G I V H A ++ V W P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 335 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 382
+ L+L S+D V + + + NG SPI + H+ V W+P
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 383 -DKSSVFGSSAEDGLLNIWDY 402
+S F + D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 312 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 359
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 136 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 360 GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 413
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 194 YVLE--STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-----EQGP 242
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHC 328
P+ GH V DV SS +F G D L LWD GT+ V H D+
Sbjct: 55 PQRALRGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLS 110
Query: 329 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-V 387
V ++ D+ I++GS D ++++++ + GV + E HS V CV++SP+ S+ +
Sbjct: 111 VAFSS-DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164
Query: 388 FGSSAEDGLLNIWD 401
S D L+ +W+
Sbjct: 165 IVSCGWDKLVKVWN 178
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 14/166 (8%)
Query: 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 330
RG GH V + P S D +I+W + ++A H V
Sbjct: 8 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 67
Query: 331 WNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 388
+ D L+GS D ++R++D LT+ G+ +F GH+ VL V +S D +
Sbjct: 68 DVVISSDGQFALSGSWDGTLRLWD---LTT---GTTTRRFVGHTKDVLSVAFSSDNRQIV 121
Query: 389 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSS 434
S + D + +W+ V K Q + + + + F SP+SS
Sbjct: 122 -SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF-----SPNSS 161
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 321 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK----FEGHSAAVL 376
H A + + W P +DN+I +GS D +V +++ + G+ P+ + EGH+ V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE---IPDGGLVLPLREPVITLEGHTKRVG 135
Query: 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 413
V W P +V S+ D ++ +WD + GP
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 18/184 (9%)
Query: 276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG------TSPVIKVEKAHDADLHCV 329
GH V D+ +CP + S +D +++W+ G PVI +E H + V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIV 137
Query: 330 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF--EGHSAAVLCVQWSPDKSSV 387
W+P N++L+ DN + ++D G G+ + + H + V WS D ++
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWD------VGTGAAVLTLGPDVHPDTIYSVDWSRD-GAL 190
Query: 388 FGSSAEDGLLNIWDYEKVGKKVEQG-PRTTNYPAGLFFQHAGHSPSSSI-KFVLRESCLV 445
+S D + + + K E+ P P F G ++ + R+ L
Sbjct: 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250
Query: 446 DNNH 449
D H
Sbjct: 251 DTKH 254
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
GH V V + P++ S G D+ +++WD G + + H ++ VDW+
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS-R 186
Query: 335 DDNLILTGSADNSVRMFDRRNLT 357
D LI T D VR+ + R T
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGT 209
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 198
H V I P N ++A+ ++ V++W++ P+ VL P + L GH
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI---PDGGLVLPL--REPVITLEGHTKRV 134
Query: 199 EFALAMCPTEPYVLSGGKDKSVVLWSI 225
+ +LS G D +++W +
Sbjct: 135 GIVAWHPTAQNVLLSAGCDNVILVWDV 161
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHC 328
P+ GH V DV SS +F G D L LWD GT+ V H D+
Sbjct: 78 PQRALRGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLS 133
Query: 329 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-V 387
V ++ D+ I++GS D ++++++ + GV + E HS V CV++SP+ S+ +
Sbjct: 134 VAFSS-DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187
Query: 388 FGSSAEDGLLNIWD 401
S D L+ +W+
Sbjct: 188 IVSCGWDKLVKVWN 201
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 14/166 (8%)
Query: 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 330
RG GH V + P S D +I+W + ++A H V
Sbjct: 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 90
Query: 331 WNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 388
+ D L+GS D ++R++D LT+ G+ +F GH+ VL V +S D +
Sbjct: 91 DVVISSDGQFALSGSWDGTLRLWD---LTT---GTTTRRFVGHTKDVLSVAFSSDNRQIV 144
Query: 389 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSS 434
S + D + +W+ V K Q + + + + F SP+SS
Sbjct: 145 -SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF-----SPNSS 184
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 276 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
GHE V V + P S D +++W G I V H A ++ V W P
Sbjct: 53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 112
Query: 335 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 382
+ L+L S+D V + + + NG SPI + H+ V W+P
Sbjct: 113 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 168
Query: 383 -DKSSVFGSSAEDGLLNIWDY 402
+S F + D L+ IW Y
Sbjct: 169 TKESRKFVTGGADNLVKIWKY 189
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 312 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 359
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 138 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 195
Query: 360 GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 413
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 196 YVLE--STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-----EQGP 244
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 276 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
GHE V V + P S D +++W G I V H A ++ V W P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 335 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 382
+ ++L S+D V + + + NG SPI + H+ V W+P
Sbjct: 111 EYGPMLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 383 -DKSSVFGSSAEDGLLNIWDY 402
+S F + D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 312 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 359
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 136 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 360 GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 413
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 194 YVLE--STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN-----EQGP 242
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVD 330
G GH V + + S + S G+D+ + +WDAR S + K K H+A + V
Sbjct: 211 GTLQGHSSEVCGLAW-RSDGLQLASGGNDNVVQIWDAR---SSIPKFTKTNHNAAVKAVA 266
Query: 331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS 390
W P NL+ TG M + + + G+ +N + S V + WSP + +
Sbjct: 267 WCPWQSNLLATGGG----TMDKQIHFWNAATGARVNTVDAGS-QVTSLIWSPHSKEIMST 321
Query: 391 SA-EDGLLNIWDYEKVG 406
D L+IW Y G
Sbjct: 322 HGFPDNNLSIWSYSSSG 338
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 276 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
GHE V V + P S D +++W G I V H A ++ V W P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 335 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 382
+ L+L S+D V + + + NG SPI + H+ V W+P
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 383 -DKSSVFGSSAEDGLLNIWDY 402
+S F + D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 312 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 359
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 136 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 360 GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 413
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 194 YVLE--STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-----EQGP 242
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 19/146 (13%)
Query: 276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD----------ARVGTSP----VIKVEKA 321
GHE TV + F PS Q S DD + +W A G+ P + +
Sbjct: 192 GHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250
Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDR---RNLTSNGVGSPINKFEGHSAAVLCV 378
H ++ + W L L T D+++R+F + + + HS V CV
Sbjct: 251 HSRTIYDIAWCQLTGALA-TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 379 QWSPDKSSVFGSSAEDGLLNIWDYEK 404
W+P + + S ++DG + W Y++
Sbjct: 310 AWNPKEPGLLASCSDDGEVAFWKYQR 335
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 19/224 (8%)
Query: 189 LILTG----HQDNAEFALAMCPTEPYVLSGGKDKSVVLWS------IQDHITSSATDPAT 238
L+L G H D+ + LA P + S G D+ + +W I + S
Sbjct: 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTV 64
Query: 239 AKSAGS-SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297
K A S G+ + + + GHE+ V+ V + P S +
Sbjct: 65 RKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATC 123
Query: 298 GDDSCLILWDA-RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356
D + +W+ + V +H D+ V W+P L+ + S D++V+++ R
Sbjct: 124 SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLY--REE 180
Query: 357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 400
+ V EGH + V + + P + S ++D + IW
Sbjct: 181 EDDWVCCAT--LEGHESTVWSLAFDPSGQRL-ASCSDDRTVRIW 221
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 332
+ GH+D V +T S DD+ L +W A G ++ H + W+
Sbjct: 113 VLKGHDDHV--ITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGV----WS 164
Query: 333 P-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 391
+ DN+I++GS D ++++++ G I+ GH++ V C+ +K V GS
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAET------GECIHTLYGHTSTVRCMH-LHEKRVVSGS- 216
Query: 392 AEDGLLNIWDYE 403
D L +WD E
Sbjct: 217 -RDATLRVWDIE 227
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 359
D L +W+A G I H + + C+ L + +++GS D ++R++D
Sbjct: 178 DRTLKVWNAETG--ECIHTLYGHTSTVRCMH---LHEKRVVSGSRDATLRVWDIET---- 228
Query: 360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403
G ++ GH AAV CVQ+ + S A D ++ +WD E
Sbjct: 229 --GQCLHVLMGHVAAVRCVQYDGRRVV---SGAYDFMVKVWDPE 267
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 105/256 (41%), Gaps = 44/256 (17%)
Query: 155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214
I++ TD + +W+ E H + G T++ M E V+SG
Sbjct: 172 IISGSTDRT-LKVWNAETGECIHTLYGHTST---------------VRCMHLHEKRVVSG 215
Query: 215 GKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270
+D ++ +W I+ H+ A + G + D K D +
Sbjct: 216 SRDATLRVWDIETGQCLHVLMGHV--AAVRCVQYDGRRVVSGAY--DFMVKVWDPETETC 271
Query: 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 330
GH + V + F S D+ + +WD G I H + ++
Sbjct: 272 LHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGME 326
Query: 331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSAAVLCVQWSPDKSSV 387
L DN++++G+AD++V+++D + G + +G H +AV C+Q+ +K+ V
Sbjct: 327 ---LKDNILVSGNADSTVKIWDIKT------GQCLQTLQGPNKHQSAVTCLQF--NKNFV 375
Query: 388 FGSSAEDGLLNIWDYE 403
+S++DG + +WD +
Sbjct: 376 I-TSSDDGTVKLWDLK 390
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 135 KTIIHP--GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT 192
+T +H G NR+ L + V + + + +WDVE H LT
Sbjct: 269 ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT------------LT 316
Query: 193 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ 226
GHQ M + ++SG D +V +W I+
Sbjct: 317 GHQ---SLTSGMELKDNILVSGNADSTVKIWDIK 347
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 359
DS L LW S D+ + +DW+ +N I+ G+ DN N +N
Sbjct: 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWS--HNNKIIAGALDNGSLELYSTNEANN 101
Query: 360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404
+ S + +F HS++V V+++ + +V S +G + IWD K
Sbjct: 102 AINS-MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/101 (17%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358
+D +++WD R +P+ + + H + +DW D++L+L+ DN+V +++ +
Sbjct: 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES--- 294
Query: 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI 399
+++F +++P+ +F ++ D + +
Sbjct: 295 ---AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 15/78 (19%)
Query: 150 PQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC- 205
P+N+ VAT T S P +LIWD+ R+A N+ + GHQ +L C
Sbjct: 224 PKNSTRVATATGSDNDPSILIWDL-----RNA-----NTPLQTLNQGHQKGI-LSLDWCH 272
Query: 206 PTEPYVLSGGKDKSVVLW 223
E +LS G+D +V+LW
Sbjct: 273 QDEHLLLSSGRDNTVLLW 290
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG-SPINKFEGHSAA--VLCV 378
H + + V +N DN++ +G + + ++D T + +P+ + S+ V+ +
Sbjct: 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171
Query: 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 409
W+ + VF S+ +IWD K K+V
Sbjct: 172 AWNQSLAHVFASAGSSNFASIWDL-KAKKEV 201
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 330
R + H D V F Q S G D L ++ A G ++ + KAH+ ++ C
Sbjct: 608 RLVVRPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETG-EKLLDI-KAHEDEVLCCA 664
Query: 331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS--VF 388
++ DD+ I T SAD V+++D + G ++ ++ HS V C ++ +KS+ +
Sbjct: 665 FSS-DDSYIATCSADKKVKIWD------SATGKLVHTYDEHSEQVNCCHFT-NKSNHLLL 716
Query: 389 GSSAEDGLLNIWD 401
+ + D L +WD
Sbjct: 717 ATGSNDFFLKLWD 729
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 47/183 (25%)
Query: 257 DGNDKAADGPS--VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 314
DG K + P+ V G+ GH+ V + F + + S +DS + +W+ + G
Sbjct: 982 DGAIKIIELPNNRVFSSGV--GHKKAVRHIQF-TADGKTLISSSEDSVIQVWNWQTGDYV 1038
Query: 315 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD------RRNLT----------- 357
++ AH + D+ L D+ +L+ S D +V++++ R+ T
Sbjct: 1039 FLQ---AHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1093
Query: 358 -------------------SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398
S + SP+++ +GH+ V C +S D + + ++G +
Sbjct: 1094 SSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEIR 1152
Query: 399 IWD 401
IW+
Sbjct: 1153 IWN 1155
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 330
R + H D V F Q S G D L ++ A G ++ + KAH+ ++ C
Sbjct: 615 RLVVRPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETG-EKLLDI-KAHEDEVLCCA 671
Query: 331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS--VF 388
++ DD+ I T SAD V+++D + G ++ ++ HS V C ++ +KS+ +
Sbjct: 672 FSS-DDSYIATCSADKKVKIWD------SATGKLVHTYDEHSEQVNCCHFT-NKSNHLLL 723
Query: 389 GSSAEDGLLNIWD 401
+ + D L +WD
Sbjct: 724 ATGSNDFFLKLWD 736
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 47/183 (25%)
Query: 257 DGNDKAADGPS--VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 314
DG K + P+ V G+ GH+ V + F + + S +DS + +W+ + G
Sbjct: 989 DGAIKIIELPNNRVFSSGV--GHKKAVRHIQF-TADGKTLISSSEDSVIQVWNWQTGDYV 1045
Query: 315 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD------RRNLT----------- 357
++ AH + D+ L D+ +L+ S D +V++++ R+ T
Sbjct: 1046 FLQ---AHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1100
Query: 358 -------------------SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398
S + SP+++ +GH+ V C +S D + + ++G +
Sbjct: 1101 SSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEIR 1159
Query: 399 IWD 401
IW+
Sbjct: 1160 IWN 1162
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 18/141 (12%)
Query: 276 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
GHE V V + P S D + +W G I V H A ++ V W P
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 335 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 382
+ +L S+D V + + + NG SPI + H+ V W+P
Sbjct: 111 EYGPXLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 383 -DKSSVFGSSAEDGLLNIWDY 402
+S F + D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 312 TSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 359
TSP+I AH ++ W P + +TG ADN V+++ +
Sbjct: 136 TSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 360 GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 413
V + EGHS V V WSP S S ++D IW + EQGP
Sbjct: 194 YVLE--STLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDN-----EQGP 242
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWN 332
YN H V V CP F S G+D ++LWD R P +++ A D V W+
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR-KPKPATRIDFCASDTIPTSVTWH 235
Query: 333 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 392
P D+ G +V + + +N S + HS + + +S S S +
Sbjct: 236 PEKDDTFACGDETGNVSLVNIKNPDSAQTSAV------HSQNITGLAYSYHSSPFLASIS 289
Query: 393 EDGLLNIWD 401
ED + + D
Sbjct: 290 EDCTVAVLD 298
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
D ++G D SV+++D L+ V + + HS+ V CV P K ++F S ED
Sbjct: 150 DGTQAVSGGKDFSVKVWD---LSQKAV---LKSYNAHSSEVNCVAACPGKDTIFLSCGED 203
Query: 395 GLLNIWDYEK 404
G + +WD K
Sbjct: 204 GRILLWDTRK 213
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD 336
H+D V+ ++ Q S G D + +WD + V+K AH ++++CV P D
Sbjct: 138 HDDIVKTLSVFSDGTQAV-SGGKDFSVKVWD--LSQKAVLKSYNAHSSEVNCVAACPGKD 194
Query: 337 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL--CVQWSPDKSSVFGSSAED 394
+ L+ D + ++D R P + + ++ + V W P+K F E
Sbjct: 195 TIFLSCGEDGRILLWDTRK------PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET 248
Query: 395 G---LLNI 399
G L+NI
Sbjct: 249 GNVSLVNI 256
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 112/307 (36%), Gaps = 49/307 (15%)
Query: 122 FNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLG 181
+ EE F HK + L Q + + + +WD+ G
Sbjct: 57 YEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT--------G 108
Query: 182 ATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKS 241
T R GHQ +++A P +LS G ++ + LW+I S+ A ++
Sbjct: 109 TTYKR----FVGHQSEV-YSVAFSPDNRQILSAGAEREIKLWNILGECKFSS---AEKEN 160
Query: 242 AGSSGSIIKQSPKPGDGNDKAADGP---SVG-------------PRGIYNGHEDTVEDVT 285
S ++ SP N P SVG R + HE V ++
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLS 220
Query: 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD--LHCVDWNPLDDNLILTGS 343
P + + + G D L++WD T P ++ DA ++ + +NP + G+
Sbjct: 221 ISP-NGKYIATGGKDKKLLIWDILNLTYP----QREFDAGSTINQIAFNP-KLQWVAVGT 274
Query: 344 ADNSVRMFDRRNLTSNGV----GSPINKFEGHSAA---VLCVQWSPDKSSVFGSSAEDGL 396
D V++F+ + V PI K EG + W+ +F + DG+
Sbjct: 275 -DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF-AGFTDGV 332
Query: 397 LNIWDYE 403
+ + +E
Sbjct: 333 IRTFSFE 339
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 25/140 (17%)
Query: 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV--------- 318
V RGI GH D V + S + +DS +++ +R T + K+
Sbjct: 11 VVKRGILEGHSDWVTSIVAGFSQKEN-----EDSPVLISGSRDKTVMIWKLYEEEQNGYF 65
Query: 319 ---EKAHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373
KA H V L ++ ++ S D ++R++D R G+ +F GH +
Sbjct: 66 GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR------TGTTYKRFVGHQS 119
Query: 374 AVLCVQWSPDKSSVFGSSAE 393
V V +SPD + + AE
Sbjct: 120 EVYSVAFSPDNRQILSAGAE 139
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 25/156 (16%)
Query: 276 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
GHE V V + P S D +I+W GT HD+ ++ V W P
Sbjct: 55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
Query: 335 DDNLILT-GSADNSVRMFDRRNLTSNGVGS-PINKF-EGHSAAVLCVQWS---------- 381
D LIL GS+D ++ + LT G G + K H+ V W+
Sbjct: 115 DYGLILACGSSDGAISL-----LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID 169
Query: 382 ------PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 411
P+ F S D L+ +W E+ G+ E+
Sbjct: 170 HPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE 205
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 24/117 (20%)
Query: 339 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS-PDKSSVFGSSAEDGLL 397
+ T S+D SV++FD R NG I GH V V W+ P ++ S + D +
Sbjct: 28 LATCSSDRSVKIFDVR----NGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 398 NIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYA 454
IW + E G ++ +HAGH S + C +++GL A
Sbjct: 84 IIW-------REENGTWEKSH------EHAGHDSS------VNSVCWAPHDYGLILA 121
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLH 327
P + H+ V+ V +CP + + G D + +W+ V + + AH + +
Sbjct: 279 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN--VCSGACLSAVDAH-SQVC 335
Query: 328 CVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 386
+ W+P LI G A N + ++ + + + + +GH++ VL + SPD ++
Sbjct: 336 SILWSPHYKELISGHGFAQNQLVIWKYPTM------AKVAELKGHTSRVLSLTMSPDGAT 389
Query: 387 VFGSSAEDGLLNIW 400
V S+A D L +W
Sbjct: 390 V-ASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLH 327
P + H+ V+ V +CP + + G D + +W+ V + + AH + +
Sbjct: 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN--VCSGACLSAVDAH-SQVC 324
Query: 328 CVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 386
+ W+P LI G A N + ++ + + + + +GH++ VL + SPD ++
Sbjct: 325 SILWSPHYKELISGHGFAQNQLVIWKYPTM------AKVAELKGHTSRVLSLTMSPDGAT 378
Query: 387 VFGSSAEDGLLNIW 400
V S+A D L +W
Sbjct: 379 V-ASAAADETLRLW 391
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 55/198 (27%)
Query: 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270
++S +DKS++LW + +DKA V
Sbjct: 398 IVSASRDKSIILWKLTK-------------------------------DDKAY---GVAQ 423
Query: 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCV 329
R + GH VEDV SS +F G D L LWD G S V H D+ V
Sbjct: 424 RRL-TGHSHFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRRFV--GHTKDVLSV 478
Query: 330 DWNPLDDNLILTGSADNSVRMFD-----RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
++ LD+ I++ S D ++++++ + ++ G EGH V CV++SP+
Sbjct: 479 AFS-LDNRQIVSASRDRTIKLWNTLGECKYTISEGG--------EGHRDWVSCVRFSPNT 529
Query: 385 -SSVFGSSAEDGLLNIWD 401
S++ D + +W+
Sbjct: 530 LQPTIVSASWDKTVKVWN 547
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLH 327
P + H+ V+ V +CP + + G D + +W+ V + + AH + +
Sbjct: 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN--VCSGACLSAVDAH-SQVC 244
Query: 328 CVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 386
+ W+P LI G A N + ++ + + + + +GH++ VL + SPD ++
Sbjct: 245 SILWSPHYKELISGHGFAQNQLVIWKYPTM------AKVAELKGHTSRVLSLTMSPDGAT 298
Query: 387 VFGSSAEDGLLNIW 400
V S+A D L +W
Sbjct: 299 V-ASAAADETLRLW 311
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 23/183 (12%)
Query: 298 GDDSCLILWDARVGTSPVIKVEKAHDA-DLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356
G+ S L +WD T P IK E A + + +P D + + +D ++ ++D N
Sbjct: 116 GEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQ 173
Query: 357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 416
T + +F+GH+ C+ S D + ++ + D + WD + G++++Q
Sbjct: 174 TL------VRQFQGHTDGASCIDISNDGTKLW-TGGLDNTVRSWDLRE-GRQLQQ----H 221
Query: 417 NYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEALKSFQIKKNF 476
++ + +F G+ P+ V ES V+ H NK K HL +S + F
Sbjct: 222 DFTSQIF--SLGYCPTGEWLAVGMESSNVEVLH----VNKPDKYQLHLH--ESCVLSLKF 273
Query: 477 IFC 479
+C
Sbjct: 274 AYC 276
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 336 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAED 394
D ILT S D + ++D + G + F GH A VLC+ +P ++ + F S D
Sbjct: 166 DMQILTASGDGTCALWDVES------GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD 219
Query: 395 GLLNIWD 401
+WD
Sbjct: 220 KKAMVWD 226
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
+GH VLC+ W DK + SS++DG + +WD
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIV-SSSQDGKVIVWD 92
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
+++++ + + ++IWD HA+ R ++T A P+ YV
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMT---------CAYAPSGNYV 112
Query: 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPKPGDGNDKAA 263
GG D +++++ T + + AG +G + + GD
Sbjct: 113 ACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD 323
D + + GH V ++ P + + F S D+ LWD R G + H+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR--QTFTGHE 226
Query: 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354
+D++ + + P + N TGS D + R+FD R
Sbjct: 227 SDINAICFFP-NGNAFATGSDDATCRLFDLR 256
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 65/283 (22%)
Query: 120 SQFNEEARSPFVKKHKTII-HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA 178
S +N + R V+ + + H G ++ R L N +IV + D+ L WD+E
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL-WDIETGQQTTT 179
Query: 179 VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT 238
G T +L++ P +SG D S LW +++ +
Sbjct: 180 FTGHTGD-------------VMSLSLAPDTRLFVSGACDASAKLWDVREGMC-------- 218
Query: 239 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298
R + GHE + + F P + F +
Sbjct: 219 --------------------------------RQTFTGHESDINAICFFP-NGNAFATGS 245
Query: 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358
DD+ L+D R + + V ++ L+L G D + ++D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADR 304
Query: 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
GV GH V C+ + D +V + + D L IW+
Sbjct: 305 AGV------LAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
+++++ + + ++IWD HA+ R ++T A P+ YV
Sbjct: 77 DSRLLVSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMT---------CAYAPSGNYV 123
Query: 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPKPGDGNDKAA 263
GG D +++++ T + + AG +G + + GD
Sbjct: 124 ACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 180
Query: 264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD 323
D + + GH V ++ P + + F S D+ LWD R G + H+
Sbjct: 181 DIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR--QTFTGHE 237
Query: 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354
+D++ + + P + N TGS D + R+FD R
Sbjct: 238 SDINAICFFP-NGNAFATGSDDATCRLFDLR 267
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 65/283 (22%)
Query: 120 SQFNEEARSPFVKKHKTII-HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA 178
S +N + R V+ + + H G ++ R L N +IV + D+ L WD+E
Sbjct: 133 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL-WDIETGQQTTT 190
Query: 179 VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT 238
G T +L++ P +SG D S LW +++ +
Sbjct: 191 FTGHTGD-------------VMSLSLAPDTRLFVSGACDASAKLWDVREGMC-------- 229
Query: 239 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298
R + GHE + + F P + F +
Sbjct: 230 --------------------------------RQTFTGHESDINAICFFP-NGNAFATGS 256
Query: 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358
DD+ L+D R + + V ++ L+L G D + ++D
Sbjct: 257 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADR 315
Query: 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
GV GH V C+ + D +V + + D L IW+
Sbjct: 316 AGV------LAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 351
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 19/135 (14%)
Query: 273 IYN--GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHC 328
+YN H +V D S +F + D + LW VIK +D H
Sbjct: 135 VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ----NDKVIKTFSGIHNDVVRHL 190
Query: 329 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 388
+DD ++ S D +++ D G + +EGH + V C++ P+ V
Sbjct: 191 A---VVDDGHFISCSNDGLIKLVDXHT------GDVLRTYEGHESFVYCIKLLPNGDIV- 240
Query: 389 GSSAEDGLLNIWDYE 403
S ED + IW E
Sbjct: 241 -SCGEDRTVRIWSKE 254
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 14/168 (8%)
Query: 191 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA---TDPATAKSAGSSGS 247
L H + A + +E L+ DK++ LW I + + D + G
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH 197
Query: 248 IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 307
I S DG K D + Y GHE V + P+ + S G+D + +W
Sbjct: 198 FISCSN---DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWS 252
Query: 308 ARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354
G+ VI + + C + I+ GS+DN VR+F +
Sbjct: 253 KENGSLKQVITLPAISIWSVDCXS-----NGDIIVGSSDNLVRIFSQE 295
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
+++++ + + ++IWD HA+ R ++T A P+ YV
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMT---------CAYAPSGNYV 112
Query: 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPKPGDGNDKAA 263
GG D +++++ T + + AG +G + + GD
Sbjct: 113 ACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD 323
D + + GH V ++ P + + F S D+ LWD R G + H+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR--QTFTGHE 226
Query: 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354
+D++ + + P + N TGS D + R+FD R
Sbjct: 227 SDINAICFFP-NGNAFATGSDDATCRLFDLR 256
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 65/283 (22%)
Query: 120 SQFNEEARSPFVKKHKTII-HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA 178
S +N + R V+ + + H G ++ R L N +IV + D+ L WD+E
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL-WDIETGQQTTT 179
Query: 179 VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT 238
G T +L++ P +SG D S LW +++ +
Sbjct: 180 FTGHTGD-------------VMSLSLAPDTRLFVSGACDASAKLWDVREGMC-------- 218
Query: 239 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298
R + GHE + + F P + F +
Sbjct: 219 --------------------------------RQTFTGHESDINAICFFP-NGNAFATGS 245
Query: 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358
DD+ L+D R + + V ++ L+L G D + ++D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADR 304
Query: 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
GV GH V C+ + D +V + + D L IW+
Sbjct: 305 AGV------LAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
+++++ + + ++IWD HA+ R ++T A P+ YV
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMT---------CAYAPSGNYV 112
Query: 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPKPGDGNDKAA 263
GG D +++++ T + + AG +G + + GD
Sbjct: 113 ACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD 323
D + + GH V ++ P + + F S D+ LWD R G + H+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR--QTFTGHE 226
Query: 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354
+D++ + + P + N TGS D + R+FD R
Sbjct: 227 SDINAICFFP-NGNAFATGSDDATCRLFDLR 256
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 65/283 (22%)
Query: 120 SQFNEEARSPFVKKHKTII-HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA 178
S +N + R V+ + + H G ++ R L N +IV + D+ L WD+E
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL-WDIETGQQTTT 179
Query: 179 VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT 238
G T +L++ P +SG D S LW +++ +
Sbjct: 180 FTGHTGD-------------VMSLSLAPDTRLFVSGACDASAKLWDVREGMC-------- 218
Query: 239 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298
R + GHE + + F P + F +
Sbjct: 219 --------------------------------RQTFTGHESDINAICFFP-NGNAFATGS 245
Query: 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358
DD+ L+D R + + V ++ L+L G D + ++D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADR 304
Query: 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
GV GH V C+ + D +V + + D L IW+
Sbjct: 305 AGV------LAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
+++++ + + ++IWD HA+ R ++T A P+ YV
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMT---------CAYAPSGNYV 112
Query: 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII--------KQSPKPGDGNDKAA 263
GG D +++++ T + + AG +G + + GD
Sbjct: 113 ACGGLDNICSIYNLK---TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD 323
D + + GH V ++ P + + F S D+ LWD R G + H+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR--QTFTGHE 226
Query: 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354
+D++ + + P + N TGS D + R+FD R
Sbjct: 227 SDINAICFFP-NGNAFATGSDDATCRLFDLR 256
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 65/283 (22%)
Query: 120 SQFNEEARSPFVKKHKTII-HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA 178
S +N + R V+ + + H G ++ R L N +IV + D+ L WD+E
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL-WDIETGQQTTT 179
Query: 179 VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT 238
G T +L++ P +SG D S LW +++ +
Sbjct: 180 FTGHTGD-------------VMSLSLAPDTRLFVSGACDASAKLWDVREGMC-------- 218
Query: 239 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298
R + GHE + + F P + F +
Sbjct: 219 --------------------------------RQTFTGHESDINAICFFP-NGNAFATGS 245
Query: 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358
DD+ L+D R + + V ++ L+L G D + ++D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADR 304
Query: 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
GV GH V C+ + D +V + + D L IW+
Sbjct: 305 AGV------LAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 312 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 140 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 196
Query: 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYPAGLFFQ 425
VL + + S D L +W + + + P TN P F
Sbjct: 197 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP---FIS 252
Query: 426 HAGHSPSSSIKFVLR 440
H P S + + R
Sbjct: 253 QKIHFPDFSTRDIHR 267
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWN 332
Y GH + + ++ F P SV D L LW+ + T + + H ++ D++
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 333 PLDDNLILTGSADNSVRMF 351
L + ++ G D+S++++
Sbjct: 207 LLGEKIMSCG-MDHSLKLW 224
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 312 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 159
Query: 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYPAGLFFQ 425
VL + + S D L +W + + + P TN P F
Sbjct: 160 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP---FIS 215
Query: 426 HAGHSPSSSIKFVLR 440
H P S + + R
Sbjct: 216 QKIHFPDFSTRDIHR 230
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWN 332
Y GH + + ++ F P SV D L LW+ + T + + H ++ D++
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 333 PLDDNLILTGSADNSVRMF 351
L + ++ G D+S++++
Sbjct: 170 LLGEKIMSCG-MDHSLKLW 187
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 312 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 159
Query: 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYPAGLFFQ 425
VL + + S D L +W + + + P TN P F
Sbjct: 160 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP---FIS 215
Query: 426 HAGHSPSSSIKFVLR 440
H P S + + R
Sbjct: 216 QKIHFPDFSTRDIHR 230
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWN 332
Y GH + + ++ F P SV D L LW+ + T + + H ++ D++
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 333 PLDDNLILTGSADNSVRMF 351
L + ++ G D+S++++
Sbjct: 170 LLGEKIMSCG-MDHSLKLW 187
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 312 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 99 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 155
Query: 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYPAGLFFQ 425
VL + + S D L +W + + + P TN P F
Sbjct: 156 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP---FIS 211
Query: 426 HAGHSPSSSIKFVLR 440
H P S + + R
Sbjct: 212 QKIHFPDFSTRDIHR 226
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWN 332
Y GH + + ++ F P SV D L LW+ + T + + H ++ D++
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 333 PLDDNLILTGSADNSVRMF 351
L + ++ G D+S++++
Sbjct: 166 LLGEKIMSCG-MDHSLKLW 183
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 312 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371
T IK H ++ + ++P D NL+L+ S D+++R++ N+ ++ + + EGH
Sbjct: 104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQTDTLVAIFGGVEGH 160
Query: 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD------YEKVGKKVEQGPRTTNYPAGLFFQ 425
VL + + S D L +W + + + P TN P F
Sbjct: 161 RDEVLSADYDLLGEKIM-SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP---FIS 216
Query: 426 HAGHSPSSSIKFVLR 440
H P S + + R
Sbjct: 217 QKIHFPDFSTRDIHR 231
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWN 332
Y GH + + ++ F P SV D L LW+ + T + + H ++ D++
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 333 PLDDNLILTGSADNSVRMF 351
L + ++ G D+S++++
Sbjct: 171 LLGEKIMSCG-MDHSLKLW 188
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 76/385 (19%), Positives = 129/385 (33%), Gaps = 93/385 (24%)
Query: 73 GPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFV- 131
G + + +K L ++E+ D L V++ + E S+ NE A+ F
Sbjct: 23 GYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNE-AKEEFTS 81
Query: 132 ------------------KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 173
+K+ H V R+ P + +V+ D+ + +WD E
Sbjct: 82 GGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDAT-IKVWDYETG 140
Query: 174 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV----LSG--------GKDKSVV 221
+ G T+S D+ D++ LA C + + G G D +V
Sbjct: 141 DFERTLKGHTDSVQDISF----DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 196
Query: 222 LWSIQ---DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278
SI DHI S++ D +G +K + GH
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK----------------------TFTGHR 234
Query: 279 DTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN 337
+ V V P+ S +D + +W V T + H + C+ W P
Sbjct: 235 EWVRMVR--PNQDGTLIASCSNDQTVRVW--VVATKECKAELREHRHVVECISWAPESSY 290
Query: 338 -------------------LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378
+L+GS D +++M+D G + GH V V
Sbjct: 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD------VSTGMCLMTLVGHDNWVRGV 344
Query: 379 QWSPDKSSVFGSSAEDGLLNIWDYE 403
+ + S A+D L +WDY+
Sbjct: 345 LFHSGGKFIL-SCADDKTLRVWDYK 368
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
D + +G+ D + +FD G ++ EGH+ + + +SPD S + ++++D
Sbjct: 175 DGKYLASGAIDGIINIFDI------ATGKLLHTLEGHAMPIRSLTFSPD-SQLLVTASDD 227
Query: 395 GLLNIWDYE 403
G + I+D +
Sbjct: 228 GYIKIYDVQ 236
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 23/205 (11%)
Query: 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
+++ +AT T V I+ VE+ +++ ++R IL+ +A P Y+
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSL----DTRGKFILS---------IAYSPDGKYL 179
Query: 212 LSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267
SG D + ++ I H P + + ++ + DG K D
Sbjct: 180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD--DGYIKIYDVQH 237
Query: 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH 327
G +GH V +V FCP F S D + +WD VGT + H +
Sbjct: 238 ANLAGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWD--VGTRTCVHTFFDHQDQVW 294
Query: 328 CVDWNPLDDNLILTGSADNSVRMFD 352
V +N ++ G D + ++D
Sbjct: 295 GVKYNGNGSKIVSVGD-DQEIHIYD 318
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 310 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369
+ T ++ + H + + ++P D L++T S D ++++D ++ G
Sbjct: 193 IATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGT------LS 245
Query: 370 GHSAAVLCVQWSPDKS 385
GH++ VL V + PD +
Sbjct: 246 GHASWVLNVAFCPDDT 261
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 319 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356
EK H A + ++NP D L+ T S D +V+++D RN+
Sbjct: 199 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI 236
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHCVDWNPLD 335
H+ V F P + D+ + LWD R + E H+ ++ +NP D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 336 DNLILTGSADNSVRMF 351
+LT N +R++
Sbjct: 262 STKLLTTDQRNEIRVY 277
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 319 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356
EK H A + ++NP D L+ T S D +V+++D RN+
Sbjct: 200 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI 237
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHCVDWNPLD 335
H+ V F P + D+ + LWD R + E H+ ++ +NP D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 336 DNLILTGSADNSVRMF 351
+LT N +R++
Sbjct: 263 STKLLTTDQRNEIRVY 278
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 334 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 393
+DN ++TG+ D +R++D N + + GH V ++++ V GS+
Sbjct: 130 FEDNYVITGADDKXIRVYDSIN------KKFLLQLSGHDGGVWALKYAHGGILVSGST-- 181
Query: 394 DGLLNIWDYEK 404
D + +WD +K
Sbjct: 182 DRTVRVWDIKK 192
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 334 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 393
+DN ++TG+ D +R++D N + + GH V ++++ V GS+
Sbjct: 130 FEDNYVITGADDKMIRVYDSIN------KKFLLQLSGHDGGVWALKYAHGGILVSGST-- 181
Query: 394 DGLLNIWDYEK 404
D + +WD +K
Sbjct: 182 DRTVRVWDIKK 192
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 328 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 387
C+ W+ D N I+TG + +R++++ G+ +N H A ++ V+W+ D + +
Sbjct: 113 CLAWSH-DGNSIVTGVENGELRLWNK-------TGALLNVLNFHRAPIVSVKWNKDGTHI 164
Query: 388 FGSSAED 394
E+
Sbjct: 165 ISMDVEN 171
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 336 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 395
+ L+L+ S D ++R++ G G+ N F GHS +++ W D + S + DG
Sbjct: 259 NKLLLSASDDGTLRIW------HGGNGNSQNCFYGHSQSIVSASWVGDDKVI--SCSMDG 310
Query: 396 LLNIWDYEK 404
+ +W ++
Sbjct: 311 SVRLWSLKQ 319
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 111/302 (36%), Gaps = 66/302 (21%)
Query: 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL--ILTGHQD 196
H + + P + + A DS V IW E +R DL I+ GH++
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDST-VSIWAKEESADR-------TFEMDLLAIIEGHEN 108
Query: 197 NAEFALAMCPTEPYVLSGGKDKSVVLWS-------------IQDH---ITSSATDPATAK 240
+ +A Y+ + +DKSV +W +Q+H + P+ A
Sbjct: 109 EVK-GVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL 167
Query: 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ-EFCSVGD 299
A SS + K D + + + NGHE TV F + CS D
Sbjct: 168 LASSSYDDTVRIWKDYDDDWECV--------AVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219
Query: 300 DSCLILW--------DARVGTSPVIKVEKAHDADLHCVDW--NPL------DDNLILTGS 343
DS + +W D + I + H ++ V W N L D L +
Sbjct: 220 DSTVRVWKYMGDDEDDQQEWVCEAI-LPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEE 278
Query: 344 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW-SPDKSSVFGSSAEDGLLNIWDY 402
D ++F +R L +GV IN V+W + ++ + +DG++N W
Sbjct: 279 VDGEWKVFAKRALC-HGV-YEIN----------VVKWLELNGKTILATGGDDGIVNFWSL 326
Query: 403 EK 404
EK
Sbjct: 327 EK 328
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
HD + CVDW P N I+T S D + ++++R +G + A V+WS
Sbjct: 54 HDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKR---PDGTWKQTLVLLRLNRAATFVRWS 109
Query: 382 PDK 384
P++
Sbjct: 110 PNE 112
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 276 GHEDTVEDVTFCPS-------SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC 328
GH + V D+ + Q SVGDD LI+W R+ I +
Sbjct: 135 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW--RLTDEGPILAGYPLSSPGIS 192
Query: 329 VDWNPLDDNLILTGSADNSVRMFD 352
V + P + N ++ G + ++R+FD
Sbjct: 193 VQFRPSNPNQLIVGERNGNIRIFD 216
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 276 GHEDTVEDVTFCPS-------SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC 328
GH + V D+ + Q SVGDD LI+W R+ I +
Sbjct: 134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW--RLTDEGPILAGYPLSSPGIS 191
Query: 329 VDWNPLDDNLILTGSADNSVRMFD 352
V + P + N ++ G + ++R+FD
Sbjct: 192 VQFRPSNPNQLIVGERNGNIRIFD 215
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 262 AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-------VGTSP 314
A + S+ + + ED ED+ CS D I+ A+ + TS
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKC----CSWSADGARIMVAAKNKIFLFDIHTSG 836
Query: 315 VI-KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373
++ ++ H + + D++P ++L + + V +++ + S + GH +
Sbjct: 837 LLGEIHTGHHSTIQYCDFSP-QNHLAVVALSQYCVELWNTDS------RSKVADCRGHLS 889
Query: 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 407
V V +SPD SS F +S++D + +W+ +KV K
Sbjct: 890 WVHGVMFSPDGSS-FLTSSDDQTIRLWETKKVCK 922
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 30/135 (22%)
Query: 276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP---------VIKVEKAHDADL 326
GH++TV+D +S S D + +W+ G V+ + +HDA
Sbjct: 1048 GHQETVKDFRLLKNS--RLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDA-- 1103
Query: 327 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 386
+ SAD + +++ S + P+++ GH+ V C +S D S+
Sbjct: 1104 ----------TKFSSTSADKTAKIW------SFDLLLPLHELRGHNGCVRCSAFSVD-ST 1146
Query: 387 VFGSSAEDGLLNIWD 401
+ + ++G + IW+
Sbjct: 1147 LLATGDDNGEIRIWN 1161
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 17/126 (13%)
Query: 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI-LWDARVGTSPVIKVEKAHDADLHCVDWN 332
Y+ H + V F SS + G C + LWD + H ++ ++
Sbjct: 701 YDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD--LNQKECRNTMFGHTNSVNHCRFS 758
Query: 333 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN--KF--------EGHSAAVLCVQWSP 382
P DD L+ + SAD +++++D TS IN +F E V C WS
Sbjct: 759 P-DDKLLASCSADGTLKLWDA---TSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSA 814
Query: 383 DKSSVF 388
D + +
Sbjct: 815 DGARIM 820
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 38/210 (18%)
Query: 211 VLSGGKDKSVVLWSIQ-----------DHITSSATDPATAKSAGSSGSIIKQSPKPGDGN 259
++SG +DK++ +W+I+ D ++ P K+ S +II GN
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP-NEKADDDSVTIISA------GN 174
Query: 260 DKAADGPSVGPRGI---YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 316
DK ++ I + GH + +T P S G D ++LW+ + +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEIMLWN--LAAKKAM 231
Query: 317 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF--DRRNLTSNGVGSPINKFEGHSAA 374
A D ++ + ++P + L + +++F D + L V +F G+SAA
Sbjct: 232 YTLSAQD-EVFSLAFSP--NRYWLAAATATGIKVFSLDPQYL----VDDLRPEFAGYSAA 284
Query: 375 ----VLCVQWSPDKSSVFGSSAEDGLLNIW 400
+ + WS D ++F + D ++ +W
Sbjct: 285 AEPHAVSLAWSADGQTLF-AGYTDNVIRVW 313
>pdb|2J04|A Chain A, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|C Chain C, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 588
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 327 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370
HC +WNP++ + I+ G+ D ++ F R N +P FE
Sbjct: 133 HCFEWNPIESS-IVVGNEDGELQFFSIR---KNSENTPEFYFES 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,829,650
Number of Sequences: 62578
Number of extensions: 635178
Number of successful extensions: 1844
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1404
Number of HSP's gapped (non-prelim): 279
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)