Query 011709
Match_columns 479
No_of_seqs 596 out of 4163
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 04:22:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0264 Nucleosome remodeling 100.0 5.4E-71 1.2E-75 491.4 33.8 386 35-466 11-406 (422)
2 KOG0271 Notchless-like WD40 re 100.0 7.2E-46 1.6E-50 323.1 24.7 285 134-462 109-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 9.7E-45 2.1E-49 320.0 21.3 247 133-462 210-458 (459)
4 KOG0302 Ribosome Assembly prot 100.0 1.2E-42 2.6E-47 302.6 25.4 355 51-449 56-429 (440)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-41 2.4E-46 300.7 20.0 246 136-466 171-420 (459)
6 KOG0273 Beta-transducin family 100.0 1E-38 2.2E-43 285.6 27.3 337 63-463 177-522 (524)
7 KOG0263 Transcription initiati 100.0 7.7E-39 1.7E-43 304.0 24.4 270 127-469 365-654 (707)
8 KOG0279 G protein beta subunit 100.0 2.1E-37 4.6E-42 259.9 26.8 258 133-469 8-267 (315)
9 KOG0286 G-protein beta subunit 100.0 6E-37 1.3E-41 258.7 28.2 285 134-462 49-343 (343)
10 KOG0279 G protein beta subunit 100.0 9.2E-37 2E-41 256.1 28.2 255 133-465 56-314 (315)
11 KOG0263 Transcription initiati 100.0 2.4E-37 5.2E-42 293.9 26.8 250 133-447 444-703 (707)
12 KOG0277 Peroxisomal targeting 100.0 1.7E-37 3.7E-42 257.0 20.8 256 130-463 50-308 (311)
13 KOG0284 Polyadenylation factor 100.0 1.1E-37 2.5E-42 274.1 17.0 243 137-462 135-378 (464)
14 KOG0271 Notchless-like WD40 re 100.0 1.1E-36 2.4E-41 265.8 21.0 274 93-401 131-479 (480)
15 KOG0315 G-protein beta subunit 100.0 2.5E-35 5.4E-40 243.5 27.6 257 133-466 32-290 (311)
16 KOG0645 WD40 repeat protein [G 100.0 2.9E-34 6.3E-39 240.1 27.8 291 64-464 17-311 (312)
17 KOG0265 U5 snRNP-specific prot 100.0 4.7E-35 1E-39 248.2 23.0 252 133-465 40-297 (338)
18 KOG0295 WD40 repeat-containing 100.0 2.7E-35 5.8E-40 255.8 19.8 251 133-466 101-366 (406)
19 KOG0285 Pleiotropic regulator 100.0 6.2E-35 1.3E-39 252.9 21.8 246 136-468 147-393 (460)
20 KOG0273 Beta-transducin family 100.0 2.3E-34 4.9E-39 257.8 23.6 263 133-466 171-484 (524)
21 KOG0291 WD40-repeat-containing 100.0 1.6E-33 3.6E-38 265.6 29.0 275 133-477 343-627 (893)
22 KOG0281 Beta-TrCP (transducin 100.0 4.6E-35 1E-39 252.7 16.5 310 48-467 163-480 (499)
23 KOG0284 Polyadenylation factor 100.0 2.7E-35 5.8E-40 259.3 15.1 239 140-464 96-337 (464)
24 KOG0645 WD40 repeat protein [G 100.0 9.1E-33 2E-37 231.2 27.2 253 133-465 7-262 (312)
25 KOG0318 WD40 repeat stress pro 100.0 1.3E-32 2.9E-37 249.6 29.3 295 133-468 183-564 (603)
26 KOG0295 WD40 repeat-containing 100.0 4.7E-33 1E-37 241.9 22.9 245 135-462 145-404 (406)
27 KOG0286 G-protein beta subunit 100.0 1.6E-32 3.5E-37 232.0 24.4 205 133-401 138-343 (343)
28 KOG0313 Microtubule binding pr 100.0 2.2E-32 4.8E-37 238.9 25.3 281 133-466 137-420 (423)
29 KOG0296 Angio-associated migra 100.0 1.6E-32 3.5E-37 238.7 22.5 284 133-464 57-398 (399)
30 KOG0316 Conserved WD40 repeat- 100.0 4.1E-32 8.8E-37 222.7 21.4 246 134-466 11-259 (307)
31 KOG0266 WD40 repeat-containing 100.0 9.2E-32 2E-36 262.4 27.9 245 139-465 158-410 (456)
32 KOG0265 U5 snRNP-specific prot 100.0 3.4E-31 7.5E-36 224.8 26.7 280 66-460 49-334 (338)
33 KOG0291 WD40-repeat-containing 100.0 7E-31 1.5E-35 247.9 31.5 355 58-466 90-510 (893)
34 KOG0319 WD40-repeat-containing 100.0 9.3E-32 2E-36 253.5 25.5 256 133-466 316-579 (775)
35 KOG0268 Sof1-like rRNA process 100.0 8E-33 1.7E-37 240.3 15.9 283 134-462 60-343 (433)
36 KOG0281 Beta-TrCP (transducin 100.0 3E-33 6.4E-38 241.6 12.9 236 139-469 196-433 (499)
37 KOG0319 WD40-repeat-containing 100.0 1.4E-31 3.1E-36 252.2 24.6 256 135-462 360-617 (775)
38 KOG0282 mRNA splicing factor [ 100.0 7.6E-33 1.6E-37 249.0 15.2 257 129-462 203-503 (503)
39 PLN00181 protein SPA1-RELATED; 100.0 2.3E-30 5.1E-35 271.2 36.2 262 137-463 529-792 (793)
40 KOG0315 G-protein beta subunit 100.0 2.6E-30 5.7E-35 213.8 28.5 265 76-405 13-290 (311)
41 KOG0266 WD40 repeat-containing 100.0 5.8E-31 1.2E-35 256.9 29.2 247 137-463 200-453 (456)
42 KOG0285 Pleiotropic regulator 100.0 2.2E-31 4.7E-36 230.9 23.1 275 93-466 167-441 (460)
43 cd00200 WD40 WD40 domain, foun 100.0 1.1E-30 2.4E-35 241.4 28.7 279 137-462 6-289 (289)
44 KOG0276 Vesicle coat complex C 100.0 4.8E-31 1E-35 244.1 23.6 204 140-405 55-259 (794)
45 KOG0277 Peroxisomal targeting 100.0 7.3E-31 1.6E-35 217.8 21.1 244 144-464 12-265 (311)
46 KOG0641 WD40 repeat protein [G 100.0 4.1E-29 8.8E-34 203.9 30.5 306 128-463 20-348 (350)
47 PTZ00421 coronin; Provisional 100.0 9.1E-30 2E-34 247.3 30.7 267 140-466 20-292 (493)
48 PLN00181 protein SPA1-RELATED; 100.0 1.2E-29 2.7E-34 265.7 33.9 258 136-464 479-738 (793)
49 KOG0276 Vesicle coat complex C 100.0 6.2E-31 1.3E-35 243.4 21.1 247 137-466 10-259 (794)
50 KOG0283 WD40 repeat-containing 100.0 1.3E-30 2.9E-35 250.2 22.8 251 138-463 265-575 (712)
51 KOG0292 Vesicle coat complex C 100.0 1.3E-30 2.8E-35 249.9 22.5 253 140-469 9-285 (1202)
52 KOG0293 WD40 repeat-containing 100.0 1.9E-29 4.2E-34 222.7 24.5 302 54-465 201-514 (519)
53 KOG0292 Vesicle coat complex C 100.0 2.8E-29 6.1E-34 240.8 24.1 211 134-405 45-282 (1202)
54 KOG0772 Uncharacterized conser 100.0 1.9E-29 4.2E-34 228.6 21.7 288 128-469 155-450 (641)
55 KOG0318 WD40 repeat stress pro 100.0 2.2E-28 4.7E-33 222.4 27.9 262 134-466 53-352 (603)
56 PTZ00421 coronin; Provisional 100.0 4.4E-28 9.5E-33 235.6 31.3 214 136-405 71-292 (493)
57 PTZ00420 coronin; Provisional 100.0 5.1E-28 1.1E-32 236.1 30.6 234 158-464 49-293 (568)
58 KOG0310 Conserved WD40 repeat- 100.0 4.6E-29 1E-33 225.1 20.9 246 139-466 25-270 (487)
59 KOG0305 Anaphase promoting com 100.0 3.1E-28 6.8E-33 228.2 26.9 242 140-466 217-463 (484)
60 KOG0316 Conserved WD40 repeat- 100.0 1.3E-28 2.9E-33 202.1 21.1 250 133-468 52-303 (307)
61 KOG1332 Vesicle coat complex C 100.0 6.8E-29 1.5E-33 205.0 18.3 258 138-464 9-286 (299)
62 KOG0264 Nucleosome remodeling 100.0 3.5E-28 7.7E-33 217.8 24.3 227 133-404 170-405 (422)
63 KOG0306 WD40-repeat-containing 100.0 4E-28 8.6E-33 229.3 25.8 249 142-463 414-663 (888)
64 KOG0973 Histone transcription 100.0 3.9E-28 8.4E-33 239.1 26.5 310 58-462 9-353 (942)
65 KOG0300 WD40 repeat-containing 100.0 1.7E-28 3.6E-33 209.9 20.7 284 135-464 143-428 (481)
66 KOG0643 Translation initiation 100.0 4.8E-29 1E-33 208.4 16.7 297 134-462 4-315 (327)
67 KOG0269 WD40 repeat-containing 100.0 2E-29 4.2E-34 239.0 15.9 242 142-459 89-335 (839)
68 PTZ00420 coronin; Provisional 100.0 1.1E-26 2.4E-31 226.8 35.4 216 133-404 67-294 (568)
69 KOG0640 mRNA cleavage stimulat 100.0 2.1E-28 4.6E-33 208.7 20.3 278 132-463 104-425 (430)
70 KOG1407 WD40 repeat protein [F 100.0 3.1E-27 6.8E-32 197.0 25.4 272 93-464 36-311 (313)
71 KOG0282 mRNA splicing factor [ 100.0 1.7E-28 3.8E-33 221.0 18.2 226 93-401 231-503 (503)
72 KOG0313 Microtubule binding pr 100.0 1.2E-27 2.6E-32 209.4 22.6 254 133-467 98-379 (423)
73 KOG0274 Cdc4 and related F-box 100.0 2.3E-27 5E-32 230.8 26.0 238 135-466 244-484 (537)
74 KOG0270 WD40 repeat-containing 100.0 6.4E-28 1.4E-32 215.3 19.4 286 56-405 163-451 (463)
75 KOG0310 Conserved WD40 repeat- 100.0 2.4E-27 5.1E-32 214.1 22.4 240 139-462 67-307 (487)
76 KOG0772 Uncharacterized conser 100.0 3.5E-27 7.7E-32 214.0 23.0 289 93-461 183-484 (641)
77 KOG0289 mRNA splicing factor [ 100.0 6.5E-27 1.4E-31 208.1 23.8 233 141-449 220-452 (506)
78 KOG0275 Conserved WD40 repeat- 100.0 1.6E-27 3.4E-32 204.5 18.7 254 136-464 209-467 (508)
79 KOG1446 Histone H3 (Lys4) meth 100.0 8.2E-26 1.8E-30 194.1 28.2 244 139-467 13-265 (311)
80 KOG0289 mRNA splicing factor [ 100.0 1.6E-26 3.6E-31 205.5 24.6 247 135-462 256-504 (506)
81 cd00200 WD40 WD40 domain, foun 100.0 6.4E-26 1.4E-30 209.4 29.8 276 65-401 10-289 (289)
82 KOG0278 Serine/threonine kinas 100.0 1.4E-27 3E-32 197.9 15.1 246 133-464 52-297 (334)
83 KOG2445 Nuclear pore complex c 100.0 8.7E-26 1.9E-30 192.7 26.2 276 138-462 11-316 (361)
84 KOG0288 WD40 repeat protein Ti 100.0 3.2E-27 7E-32 208.8 17.3 266 91-461 189-458 (459)
85 KOG0270 WD40 repeat-containing 100.0 2.1E-26 4.6E-31 205.6 22.3 261 140-466 173-451 (463)
86 KOG0294 WD40 repeat-containing 100.0 4.8E-26 1.1E-30 194.9 23.3 229 133-437 36-305 (362)
87 KOG1407 WD40 repeat protein [F 100.0 4.6E-26 9.9E-31 190.1 22.6 250 135-468 15-265 (313)
88 KOG0300 WD40 repeat-containing 100.0 2E-26 4.3E-31 197.3 20.8 263 133-464 183-476 (481)
89 KOG0296 Angio-associated migra 99.9 4.5E-26 9.7E-31 198.7 22.8 287 66-403 66-398 (399)
90 KOG0308 Conserved WD40 repeat- 99.9 6.8E-27 1.5E-31 217.8 18.6 255 138-466 19-287 (735)
91 KOG0274 Cdc4 and related F-box 99.9 2.3E-26 5E-31 223.8 22.6 236 139-466 207-443 (537)
92 KOG0288 WD40 repeat protein Ti 99.9 3.8E-27 8.2E-32 208.4 13.8 248 133-465 168-418 (459)
93 KOG0306 WD40-repeat-containing 99.9 2.3E-25 5E-30 210.8 25.6 250 131-466 364-624 (888)
94 KOG0299 U3 snoRNP-associated p 99.9 2.2E-25 4.7E-30 200.0 23.2 275 134-470 136-416 (479)
95 KOG0640 mRNA cleavage stimulat 99.9 1.1E-25 2.4E-30 192.2 19.6 248 93-403 128-426 (430)
96 KOG0299 U3 snoRNP-associated p 99.9 1.6E-25 3.4E-30 200.9 21.5 234 137-448 199-444 (479)
97 KOG1007 WD repeat protein TSSC 99.9 5.6E-25 1.2E-29 186.1 23.3 317 85-469 27-366 (370)
98 KOG4283 Transcription-coupled 99.9 9.6E-26 2.1E-30 191.2 18.6 232 192-464 40-276 (397)
99 KOG0290 Conserved WD40 repeat- 99.9 5.4E-25 1.2E-29 186.4 23.1 305 60-449 40-356 (364)
100 KOG0293 WD40 repeat-containing 99.9 1.4E-25 3E-30 198.4 20.2 249 135-465 219-471 (519)
101 KOG0267 Microtubule severing p 99.9 5.1E-27 1.1E-31 221.0 11.6 235 135-449 23-258 (825)
102 KOG0305 Anaphase promoting com 99.9 2.4E-25 5.2E-30 208.8 22.7 235 146-465 183-420 (484)
103 KOG0269 WD40 repeat-containing 99.9 1.2E-25 2.7E-30 213.4 20.7 261 140-470 39-302 (839)
104 KOG0283 WD40 repeat-containing 99.9 1.4E-25 3.1E-30 215.8 21.4 249 190-463 261-531 (712)
105 KOG0646 WD40 repeat protein [G 99.9 2.2E-25 4.7E-30 200.4 20.9 220 135-404 76-308 (476)
106 KOG0275 Conserved WD40 repeat- 99.9 6E-26 1.3E-30 194.9 16.2 272 93-462 229-507 (508)
107 KOG0647 mRNA export protein (c 99.9 1.5E-24 3.2E-29 184.8 22.4 243 140-467 27-284 (347)
108 KOG0278 Serine/threonine kinas 99.9 9E-26 1.9E-30 187.1 14.5 206 133-405 93-299 (334)
109 KOG0973 Histone transcription 99.9 6.5E-25 1.4E-29 216.5 22.4 272 137-463 9-311 (942)
110 KOG1446 Histone H3 (Lys4) meth 99.9 5.7E-23 1.2E-27 176.7 30.9 239 139-464 55-303 (311)
111 KOG1332 Vesicle coat complex C 99.9 1E-24 2.2E-29 180.3 19.2 243 93-405 27-288 (299)
112 KOG0639 Transducin-like enhanc 99.9 3.5E-25 7.7E-30 200.4 18.0 258 132-463 411-703 (705)
113 KOG0308 Conserved WD40 repeat- 99.9 4.1E-25 8.8E-30 206.0 18.8 244 94-405 42-287 (735)
114 KOG4283 Transcription-coupled 99.9 2.4E-24 5.2E-29 182.8 21.2 303 136-464 39-365 (397)
115 KOG0301 Phospholipase A2-activ 99.9 2.8E-24 6.1E-29 201.9 21.8 239 135-465 9-250 (745)
116 KOG4328 WD40 protein [Function 99.9 5.1E-24 1.1E-28 191.1 21.9 263 136-464 182-450 (498)
117 KOG0641 WD40 repeat protein [G 99.9 9.7E-23 2.1E-27 166.8 26.3 227 130-403 79-349 (350)
118 KOG2055 WD40 repeat protein [G 99.9 1.5E-23 3.3E-28 188.2 22.9 283 140-464 213-512 (514)
119 KOG0307 Vesicle coat complex C 99.9 1.2E-24 2.6E-29 215.6 17.0 260 137-467 61-330 (1049)
120 KOG1408 WD40 repeat protein [F 99.9 1.2E-23 2.6E-28 198.0 21.5 327 51-465 359-714 (1080)
121 KOG0302 Ribosome Assembly prot 99.9 1.1E-23 2.3E-28 184.7 18.9 220 132-401 203-436 (440)
122 KOG0301 Phospholipase A2-activ 99.9 4.9E-23 1.1E-27 193.6 22.7 237 134-464 51-288 (745)
123 KOG0267 Microtubule severing p 99.9 9.6E-25 2.1E-29 205.9 9.7 196 134-394 64-259 (825)
124 KOG0650 WD40 repeat nucleolar 99.9 6E-23 1.3E-27 189.9 21.1 286 132-462 392-733 (733)
125 KOG2096 WD40 repeat protein [G 99.9 4.1E-22 9E-27 171.1 23.7 276 135-464 81-360 (420)
126 KOG0321 WD40 repeat-containing 99.9 1.8E-22 3.9E-27 188.2 23.2 285 133-468 93-395 (720)
127 KOG1036 Mitotic spindle checkp 99.9 2.9E-22 6.3E-27 171.5 22.2 240 133-450 47-295 (323)
128 KOG1063 RNA polymerase II elon 99.9 1.4E-22 3E-27 190.6 21.6 310 130-466 181-650 (764)
129 KOG1036 Mitotic spindle checkp 99.9 6.9E-22 1.5E-26 169.3 24.0 241 140-466 13-264 (323)
130 KOG1273 WD40 repeat protein [G 99.9 1.4E-22 3E-27 173.8 19.5 291 135-466 19-324 (405)
131 KOG1587 Cytoplasmic dynein int 99.9 1.1E-21 2.3E-26 189.7 28.0 278 133-468 235-520 (555)
132 KOG4227 WD40 repeat protein [G 99.9 2.9E-22 6.3E-27 176.4 21.2 290 122-464 38-387 (609)
133 KOG1539 WD repeat protein [Gen 99.9 5E-21 1.1E-25 183.7 31.2 301 133-470 236-654 (910)
134 KOG1274 WD40 repeat protein [G 99.9 1E-21 2.2E-26 190.5 26.4 244 136-465 9-263 (933)
135 KOG0294 WD40 repeat-containing 99.9 1.1E-21 2.3E-26 168.4 22.7 240 155-466 3-283 (362)
136 KOG1007 WD repeat protein TSSC 99.9 3.6E-22 7.9E-27 169.2 18.9 217 138-404 121-362 (370)
137 KOG4328 WD40 protein [Function 99.9 1.8E-21 4E-26 174.8 23.6 256 133-463 227-494 (498)
138 KOG0643 Translation initiation 99.9 1.3E-21 2.8E-26 164.2 21.1 211 190-466 5-222 (327)
139 KOG2048 WD40 repeat protein [G 99.9 2.2E-21 4.8E-26 182.3 24.9 241 139-462 24-273 (691)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.7E-20 3.7E-25 175.2 31.0 245 137-466 27-281 (300)
141 KOG0647 mRNA export protein (c 99.9 4.8E-21 1E-25 163.5 23.2 256 94-447 45-311 (347)
142 KOG1539 WD repeat protein [Gen 99.9 5.9E-21 1.3E-25 183.3 26.4 306 133-466 195-608 (910)
143 KOG0303 Actin-binding protein 99.9 3.8E-21 8.3E-26 169.7 22.3 215 189-464 75-294 (472)
144 KOG0268 Sof1-like rRNA process 99.9 6E-23 1.3E-27 179.1 10.2 243 188-465 59-303 (433)
145 KOG0321 WD40 repeat-containing 99.9 1.5E-21 3.3E-26 182.0 20.2 256 145-465 54-348 (720)
146 KOG0646 WD40 repeat protein [G 99.9 3.8E-21 8.2E-26 173.3 21.3 245 154-466 51-309 (476)
147 KOG2919 Guanine nucleotide-bin 99.9 1.8E-20 3.9E-25 161.5 24.0 246 137-449 101-360 (406)
148 KOG2919 Guanine nucleotide-bin 99.9 8.6E-21 1.9E-25 163.4 22.0 259 144-468 53-331 (406)
149 KOG2106 Uncharacterized conser 99.9 3.1E-20 6.8E-25 168.8 26.7 265 141-461 247-518 (626)
150 KOG4378 Nuclear protein COP1 [ 99.9 3.4E-21 7.3E-26 174.6 19.0 221 144-441 83-305 (673)
151 KOG0307 Vesicle coat complex C 99.9 5.5E-22 1.2E-26 196.9 15.2 218 133-406 109-330 (1049)
152 KOG2106 Uncharacterized conser 99.9 3.1E-20 6.6E-25 168.8 24.4 301 134-464 281-626 (626)
153 KOG0290 Conserved WD40 repeat- 99.9 2.4E-20 5.3E-25 158.4 21.2 265 61-399 93-361 (364)
154 KOG2096 WD40 repeat protein [G 99.9 9.8E-21 2.1E-25 162.7 17.7 223 188-469 79-313 (420)
155 KOG1188 WD40 repeat protein [G 99.9 1.4E-20 3E-25 163.4 18.6 250 154-463 41-345 (376)
156 KOG2445 Nuclear pore complex c 99.9 1.4E-19 3.1E-24 155.0 23.7 261 93-404 29-319 (361)
157 KOG0303 Actin-binding protein 99.9 2.2E-19 4.8E-24 158.7 24.2 214 136-404 77-295 (472)
158 KOG1034 Transcriptional repres 99.9 4.5E-20 9.7E-25 159.4 19.2 258 138-465 87-384 (385)
159 KOG4378 Nuclear protein COP1 [ 99.9 6.1E-20 1.3E-24 166.5 19.2 246 143-468 37-284 (673)
160 KOG0639 Transducin-like enhanc 99.9 1.4E-20 3.1E-25 170.8 15.2 229 193-474 417-673 (705)
161 KOG0642 Cell-cycle nuclear pro 99.8 4E-20 8.7E-25 170.5 17.9 226 134-404 288-562 (577)
162 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.9E-19 1.5E-23 164.4 26.6 234 154-464 2-237 (300)
163 KOG1009 Chromatin assembly com 99.8 9.9E-20 2.2E-24 161.5 19.2 183 140-354 13-195 (434)
164 KOG0644 Uncharacterized conser 99.8 3.5E-21 7.6E-26 184.5 10.3 245 133-462 183-466 (1113)
165 KOG1408 WD40 repeat protein [F 99.8 6.6E-20 1.4E-24 173.1 18.2 213 134-404 495-714 (1080)
166 KOG1274 WD40 repeat protein [G 99.8 2.8E-19 6E-24 173.8 22.8 223 139-446 55-287 (933)
167 KOG1063 RNA polymerase II elon 99.8 2.1E-19 4.5E-24 169.4 20.6 295 133-464 47-391 (764)
168 KOG0322 G-protein beta subunit 99.8 3.9E-19 8.4E-24 149.1 18.2 290 134-463 8-322 (323)
169 KOG2048 WD40 repeat protein [G 99.8 9.9E-18 2.1E-22 158.0 26.6 247 138-465 67-320 (691)
170 KOG1034 Transcriptional repres 99.8 4.5E-19 9.8E-24 153.2 15.2 263 137-466 35-339 (385)
171 KOG1273 WD40 repeat protein [G 99.8 1.8E-18 3.9E-23 148.7 17.7 202 199-462 26-278 (405)
172 KOG1310 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 160.4 15.7 231 135-409 45-309 (758)
173 KOG1445 Tumor-specific antigen 99.8 3.2E-18 6.9E-23 159.9 18.9 247 153-464 591-844 (1012)
174 KOG0642 Cell-cycle nuclear pro 99.8 1.5E-18 3.3E-23 160.2 16.4 251 94-372 311-573 (577)
175 KOG0649 WD40 repeat protein [G 99.8 3.3E-17 7.1E-22 136.1 22.1 243 142-449 12-264 (325)
176 KOG1517 Guanine nucleotide bin 99.8 2.9E-17 6.3E-22 161.8 25.5 264 140-464 1109-1381(1387)
177 KOG2055 WD40 repeat protein [G 99.8 1E-17 2.2E-22 151.0 19.5 204 197-465 214-418 (514)
178 KOG1538 Uncharacterized conser 99.8 1.7E-17 3.7E-22 155.9 21.6 270 142-466 14-295 (1081)
179 KOG1523 Actin-related protein 99.8 1.7E-17 3.6E-22 143.2 19.4 215 140-405 10-238 (361)
180 KOG1445 Tumor-specific antigen 99.8 5.8E-18 1.3E-22 158.1 17.1 215 138-404 625-845 (1012)
181 PRK11028 6-phosphogluconolacto 99.8 1.1E-15 2.5E-20 144.5 32.4 263 133-464 27-304 (330)
182 KOG1009 Chromatin assembly com 99.8 9.3E-18 2E-22 149.1 15.4 216 193-449 10-250 (434)
183 KOG1334 WD40 repeat protein [G 99.8 2E-17 4.3E-22 150.3 17.1 271 134-463 136-423 (559)
184 COG2319 FOG: WD40 repeat [Gene 99.8 1.8E-15 3.8E-20 148.1 30.8 249 135-465 60-315 (466)
185 KOG1188 WD40 repeat protein [G 99.8 3.1E-17 6.7E-22 142.7 15.8 195 209-465 41-243 (376)
186 KOG1310 WD40 repeat protein [G 99.8 1.8E-17 3.9E-22 152.5 14.8 234 187-466 42-305 (758)
187 KOG1524 WD40 repeat-containing 99.7 5.1E-17 1.1E-21 149.2 16.8 178 190-449 99-276 (737)
188 KOG0649 WD40 repeat protein [G 99.7 3.1E-15 6.8E-20 124.4 25.1 252 133-466 55-318 (325)
189 KOG1587 Cytoplasmic dynein int 99.7 7E-16 1.5E-20 149.6 24.3 239 163-467 222-475 (555)
190 KOG1240 Protein kinase contain 99.7 4.5E-16 9.7E-21 155.9 23.2 281 133-464 1041-1334(1431)
191 KOG0771 Prolactin regulatory e 99.7 1.1E-16 2.4E-21 143.3 15.1 200 144-405 148-356 (398)
192 COG2319 FOG: WD40 repeat [Gene 99.7 1.3E-14 2.8E-19 141.9 31.3 251 132-467 147-403 (466)
193 KOG0322 G-protein beta subunit 99.7 4.7E-16 1E-20 130.8 17.2 165 199-402 153-322 (323)
194 KOG0771 Prolactin regulatory e 99.7 2.3E-15 5.1E-20 134.9 21.5 200 200-465 148-355 (398)
195 PRK01742 tolB translocation pr 99.7 2E-15 4.3E-20 147.3 22.8 221 135-440 198-426 (429)
196 KOG4227 WD40 repeat protein [G 99.7 8.9E-16 1.9E-20 135.9 17.8 178 187-407 48-229 (609)
197 KOG1517 Guanine nucleotide bin 99.7 3.1E-15 6.8E-20 147.8 23.2 264 141-466 1065-1335(1387)
198 KOG1272 WD40-repeat-containing 99.7 1.2E-16 2.6E-21 144.4 11.1 230 142-462 131-360 (545)
199 KOG1523 Actin-related protein 99.7 1.4E-15 2.9E-20 131.5 16.8 218 198-464 12-236 (361)
200 PF12265 CAF1C_H4-bd: Histone- 99.7 1.1E-17 2.3E-22 117.6 2.7 69 41-109 1-72 (74)
201 KOG0650 WD40 repeat nucleolar 99.7 8.2E-16 1.8E-20 143.1 15.1 208 134-400 515-732 (733)
202 KOG2394 WD40 protein DMR-N9 [G 99.7 1.9E-15 4.2E-20 139.1 16.5 223 152-405 184-454 (636)
203 KOG1963 WD40 repeat protein [G 99.7 3.5E-14 7.6E-19 138.3 25.6 266 137-465 202-539 (792)
204 PRK01742 tolB translocation pr 99.7 7.3E-15 1.6E-19 143.4 21.3 213 162-464 183-401 (429)
205 KOG2139 WD40 repeat protein [G 99.7 1.2E-14 2.6E-19 127.7 20.0 256 141-450 99-366 (445)
206 KOG0644 Uncharacterized conser 99.6 1.7E-15 3.7E-20 146.1 13.5 242 134-404 226-469 (1113)
207 KOG2110 Uncharacterized conser 99.6 1E-13 2.2E-18 122.3 23.5 234 141-466 6-250 (391)
208 KOG0280 Uncharacterized conser 99.6 4E-14 8.6E-19 121.2 19.1 267 131-464 61-333 (339)
209 KOG2321 WD40 repeat protein [G 99.6 5.7E-14 1.2E-18 130.5 21.2 285 130-462 41-341 (703)
210 KOG3881 Uncharacterized conser 99.6 7.8E-14 1.7E-18 123.9 19.0 212 140-405 105-322 (412)
211 PRK11028 6-phosphogluconolacto 99.6 4.2E-13 9.2E-18 126.9 25.5 249 155-464 4-258 (330)
212 KOG2139 WD40 repeat protein [G 99.6 1.5E-12 3.2E-17 114.8 25.3 215 140-404 140-384 (445)
213 KOG2394 WD40 protein DMR-N9 [G 99.6 2.8E-14 6E-19 131.5 15.0 172 140-355 219-453 (636)
214 KOG1354 Serine/threonine prote 99.6 6.3E-14 1.4E-18 122.4 16.2 301 140-462 25-357 (433)
215 KOG1524 WD40 repeat-containing 99.6 2.9E-14 6.4E-19 131.3 14.8 182 137-399 101-282 (737)
216 PRK05137 tolB translocation pr 99.6 9.2E-13 2E-17 129.1 25.8 205 163-449 182-396 (435)
217 PRK03629 tolB translocation pr 99.6 3.4E-12 7.5E-17 124.3 28.0 200 136-404 194-407 (429)
218 KOG1538 Uncharacterized conser 99.6 1.1E-13 2.5E-18 130.6 16.5 239 135-404 48-294 (1081)
219 PF08662 eIF2A: Eukaryotic tra 99.6 3.3E-13 7.2E-18 115.9 18.2 156 282-464 9-179 (194)
220 PRK05137 tolB translocation pr 99.6 6.7E-12 1.5E-16 123.0 29.4 203 134-404 195-413 (435)
221 PRK03629 tolB translocation pr 99.6 2.7E-12 5.8E-17 125.1 26.2 205 163-449 179-393 (429)
222 KOG1963 WD40 repeat protein [G 99.6 5.1E-13 1.1E-17 130.4 20.8 275 147-463 23-321 (792)
223 KOG2110 Uncharacterized conser 99.5 1.6E-11 3.5E-16 108.7 27.0 195 143-405 49-250 (391)
224 PRK04922 tolB translocation pr 99.5 1.5E-12 3.2E-17 127.5 23.1 217 163-463 184-410 (433)
225 PF08662 eIF2A: Eukaryotic tra 99.5 6.9E-13 1.5E-17 113.9 18.1 112 278-403 59-179 (194)
226 KOG1409 Uncharacterized conser 99.5 1.1E-12 2.3E-17 114.9 17.9 274 134-468 18-398 (404)
227 PRK04922 tolB translocation pr 99.5 3E-12 6.6E-17 125.3 23.1 202 135-404 198-412 (433)
228 PRK02889 tolB translocation pr 99.5 3.2E-12 7E-17 124.6 23.1 207 163-450 176-391 (427)
229 KOG1272 WD40-repeat-containing 99.5 4.7E-14 1E-18 127.8 8.3 235 134-448 164-398 (545)
230 PRK02889 tolB translocation pr 99.5 5.5E-12 1.2E-16 123.1 22.6 201 135-401 190-399 (427)
231 KOG2111 Uncharacterized conser 99.5 7.9E-11 1.7E-15 102.4 24.9 167 133-356 87-258 (346)
232 KOG2111 Uncharacterized conser 99.5 1.9E-10 4.1E-15 100.0 26.6 179 164-405 76-258 (346)
233 KOG0280 Uncharacterized conser 99.4 2.6E-11 5.5E-16 104.2 20.4 216 162-441 45-265 (339)
234 KOG3881 Uncharacterized conser 99.4 4E-12 8.6E-17 113.2 16.1 193 137-383 145-342 (412)
235 KOG1334 WD40 repeat protein [G 99.4 8.6E-13 1.9E-17 120.5 12.2 226 186-461 133-363 (559)
236 TIGR02800 propeller_TolB tol-p 99.4 5.2E-11 1.1E-15 116.7 25.0 204 163-449 170-384 (417)
237 COG2706 3-carboxymuconate cycl 99.4 3.6E-09 7.9E-14 94.2 33.6 309 85-469 3-326 (346)
238 KOG1240 Protein kinase contain 99.4 1.2E-11 2.7E-16 124.7 19.8 226 186-470 1039-1279(1431)
239 KOG4497 Uncharacterized conser 99.4 3E-11 6.6E-16 105.3 19.3 271 141-450 49-423 (447)
240 KOG0974 WD-repeat protein WDR6 99.4 7E-12 1.5E-16 124.7 17.1 193 152-406 98-291 (967)
241 KOG0309 Conserved WD40 repeat- 99.4 3.1E-12 6.7E-17 122.4 13.9 215 133-405 17-234 (1081)
242 KOG1354 Serine/threonine prote 99.4 4.5E-12 9.7E-17 111.0 13.7 275 133-449 77-425 (433)
243 PF10282 Lactonase: Lactonase, 99.4 3.1E-09 6.7E-14 100.7 34.3 305 87-464 2-322 (345)
244 KOG1064 RAVE (regulator of V-A 99.4 3.3E-12 7.1E-17 133.0 14.5 192 138-406 2206-2401(2439)
245 KOG2321 WD40 repeat protein [G 99.4 9.1E-11 2E-15 109.6 21.8 212 142-406 135-346 (703)
246 KOG4547 WD40 repeat-containing 99.4 6.6E-11 1.4E-15 111.2 21.1 196 150-405 2-222 (541)
247 PF02239 Cytochrom_D1: Cytochr 99.4 4.2E-10 9E-15 106.6 26.5 265 133-466 28-349 (369)
248 KOG0309 Conserved WD40 repeat- 99.4 3.6E-12 7.8E-17 122.0 12.4 272 52-404 55-340 (1081)
249 PRK00178 tolB translocation pr 99.4 2.6E-10 5.6E-15 112.0 25.7 204 164-449 180-393 (430)
250 PRK04792 tolB translocation pr 99.4 6.5E-10 1.4E-14 108.9 27.6 200 136-403 213-425 (448)
251 TIGR02800 propeller_TolB tol-p 99.4 5E-10 1.1E-14 109.8 26.4 201 134-402 183-396 (417)
252 PRK00178 tolB translocation pr 99.4 1.4E-09 3.1E-14 106.7 29.3 202 134-403 192-406 (430)
253 KOG1409 Uncharacterized conser 99.4 5.5E-11 1.2E-15 104.3 16.6 202 140-355 68-271 (404)
254 KOG4497 Uncharacterized conser 99.3 4E-12 8.6E-17 110.7 9.4 227 146-465 14-241 (447)
255 PRK04792 tolB translocation pr 99.3 5.2E-10 1.1E-14 109.6 25.3 204 164-449 199-412 (448)
256 KOG4547 WD40 repeat-containing 99.3 2.2E-10 4.8E-15 107.7 19.9 209 206-466 3-222 (541)
257 KOG2315 Predicted translation 99.3 3.7E-09 8E-14 98.9 25.9 133 302-464 252-390 (566)
258 KOG4714 Nucleoporin [Nuclear s 99.3 1.8E-10 4E-15 97.4 15.5 264 143-463 39-317 (319)
259 KOG0974 WD-repeat protein WDR6 99.3 2.5E-10 5.4E-15 113.9 17.7 200 199-467 90-291 (967)
260 PRK01029 tolB translocation pr 99.2 4.9E-09 1.1E-13 101.9 24.9 164 279-463 231-402 (428)
261 PF02239 Cytochrom_D1: Cytochr 99.2 1.2E-08 2.6E-13 96.7 26.6 190 154-405 6-204 (369)
262 PRK01029 tolB translocation pr 99.2 5.4E-09 1.2E-13 101.7 24.6 205 139-404 183-404 (428)
263 COG5170 CDC55 Serine/threonine 99.2 2.1E-10 4.6E-15 99.4 12.6 301 140-462 26-365 (460)
264 KOG4532 WD40-like repeat conta 99.2 5E-09 1.1E-13 89.2 19.9 197 152-409 83-288 (344)
265 KOG2041 WD40 repeat protein [G 99.2 6.7E-10 1.5E-14 106.4 15.4 254 137-451 11-280 (1189)
266 PLN02919 haloacid dehalogenase 99.2 3.5E-08 7.6E-13 105.7 29.3 283 145-465 572-889 (1057)
267 KOG2314 Translation initiation 99.2 2.3E-08 4.9E-13 93.6 23.6 281 132-449 242-557 (698)
268 KOG4190 Uncharacterized conser 99.1 3E-10 6.4E-15 105.7 10.5 221 131-405 726-950 (1034)
269 COG2706 3-carboxymuconate cycl 99.1 1.1E-07 2.4E-12 84.9 25.5 243 162-465 15-275 (346)
270 COG5354 Uncharacterized protei 99.1 5.7E-08 1.2E-12 90.1 24.0 287 133-464 65-395 (561)
271 PF10282 Lactonase: Lactonase, 99.1 3.7E-08 8.1E-13 93.4 23.8 241 163-463 13-274 (345)
272 COG5170 CDC55 Serine/threonine 99.1 1.8E-09 3.9E-14 93.7 12.4 232 198-464 28-309 (460)
273 PF04762 IKI3: IKI3 family; I 99.1 1.1E-07 2.5E-12 100.0 26.9 242 139-404 74-334 (928)
274 KOG1064 RAVE (regulator of V-A 99.0 1.8E-09 4E-14 113.2 11.1 188 198-466 2210-2400(2439)
275 PLN02919 haloacid dehalogenase 99.0 2.3E-07 5E-12 99.6 25.8 225 143-405 626-890 (1057)
276 KOG3914 WD repeat protein WDR4 99.0 1.5E-08 3.3E-13 91.2 14.1 165 143-369 65-232 (390)
277 KOG2315 Predicted translation 99.0 2.2E-07 4.8E-12 87.3 21.8 206 133-404 158-391 (566)
278 TIGR02658 TTQ_MADH_Hv methylam 99.0 4.1E-06 8.8E-11 77.9 29.9 246 148-466 53-332 (352)
279 KOG3914 WD repeat protein WDR4 98.9 2.2E-08 4.7E-13 90.3 13.1 161 199-408 65-228 (390)
280 KOG4532 WD40-like repeat conta 98.9 1.3E-07 2.9E-12 80.7 16.9 176 207-441 83-262 (344)
281 COG4946 Uncharacterized protei 98.9 2.4E-06 5.2E-11 78.9 26.1 147 148-355 327-478 (668)
282 KOG1008 Uncharacterized conser 98.9 1.1E-09 2.3E-14 104.1 4.6 244 141-441 57-315 (783)
283 KOG2695 WD40 repeat protein [G 98.9 4.5E-09 9.7E-14 92.6 8.1 122 277-405 251-378 (425)
284 PRK04043 tolB translocation pr 98.9 2E-06 4.4E-11 83.3 26.4 182 198-449 189-387 (419)
285 PRK04043 tolB translocation pr 98.9 3.1E-06 6.7E-11 82.0 27.6 193 141-403 188-398 (419)
286 COG5354 Uncharacterized protei 98.9 5.4E-07 1.2E-11 83.8 20.6 279 140-469 32-353 (561)
287 KOG4190 Uncharacterized conser 98.9 1E-08 2.2E-13 95.8 9.5 170 188-405 728-908 (1034)
288 KOG4714 Nucleoporin [Nuclear s 98.9 2.6E-08 5.6E-13 84.6 10.8 75 280-355 181-255 (319)
289 PF15492 Nbas_N: Neuroblastoma 98.8 2.9E-06 6.2E-11 73.8 22.1 180 278-467 43-262 (282)
290 KOG1912 WD40 repeat protein [G 98.8 1E-06 2.2E-11 86.0 21.0 253 141-471 16-311 (1062)
291 KOG2041 WD40 repeat protein [G 98.8 1.2E-07 2.7E-12 91.3 13.5 171 199-404 17-187 (1189)
292 PF08450 SGL: SMP-30/Gluconola 98.8 1.3E-05 2.9E-10 72.3 26.2 225 145-447 4-243 (246)
293 KOG2314 Translation initiation 98.8 1.7E-06 3.6E-11 81.4 20.1 277 144-464 214-525 (698)
294 KOG1275 PAB-dependent poly(A) 98.7 3.9E-07 8.4E-12 90.4 15.9 145 292-463 188-341 (1118)
295 KOG1920 IkappaB kinase complex 98.7 6.5E-06 1.4E-10 84.6 24.1 239 141-405 69-324 (1265)
296 COG4946 Uncharacterized protei 98.7 8.1E-06 1.8E-10 75.5 22.4 118 276-405 357-479 (668)
297 KOG2695 WD40 repeat protein [G 98.7 8.6E-08 1.9E-12 84.7 9.2 157 157-371 228-387 (425)
298 PF00400 WD40: WD domain, G-be 98.7 4E-08 8.7E-13 60.2 5.1 38 363-401 2-39 (39)
299 PF15492 Nbas_N: Neuroblastoma 98.6 5.4E-06 1.2E-10 72.2 18.6 199 143-405 46-261 (282)
300 KOG1832 HIV-1 Vpr-binding prot 98.6 4.5E-08 9.7E-13 96.5 5.7 191 137-405 1098-1293(1516)
301 PF04762 IKI3: IKI3 family; I 98.6 3.1E-05 6.7E-10 82.0 26.9 259 139-404 119-457 (928)
302 PF00400 WD40: WD domain, G-be 98.6 2E-07 4.3E-12 57.0 5.9 37 315-352 3-39 (39)
303 PF08450 SGL: SMP-30/Gluconola 98.6 4.1E-05 8.9E-10 69.1 23.2 193 137-392 37-245 (246)
304 KOG2066 Vacuolar assembly/sort 98.6 4.6E-06 1E-10 82.0 17.3 187 139-404 38-234 (846)
305 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00027 5.8E-09 66.0 28.1 111 285-405 200-332 (352)
306 KOG0882 Cyclophilin-related pe 98.5 1.1E-06 2.4E-11 80.6 11.6 260 137-449 6-296 (558)
307 KOG2066 Vacuolar assembly/sort 98.5 6.4E-06 1.4E-10 81.1 17.5 189 198-464 41-233 (846)
308 KOG1645 RING-finger-containing 98.5 1.5E-05 3.3E-10 72.3 17.8 79 137-229 190-269 (463)
309 PF11768 DUF3312: Protein of u 98.5 1.3E-05 2.8E-10 76.8 18.4 151 281-443 208-371 (545)
310 PF07433 DUF1513: Protein of u 98.5 0.00028 6.1E-09 63.5 25.6 231 141-450 5-277 (305)
311 KOG1275 PAB-dependent poly(A) 98.5 4E-06 8.7E-11 83.5 14.9 186 152-401 146-340 (1118)
312 KOG1008 Uncharacterized conser 98.4 2.2E-07 4.7E-12 88.8 4.6 218 136-403 98-335 (783)
313 KOG1645 RING-finger-containing 98.4 1.6E-06 3.4E-11 78.5 9.1 133 261-404 176-316 (463)
314 KOG2114 Vacuolar assembly/sort 98.4 0.00012 2.5E-09 73.1 22.4 209 142-405 27-245 (933)
315 KOG0882 Cyclophilin-related pe 98.3 1E-05 2.3E-10 74.3 12.8 207 207-464 19-231 (558)
316 TIGR03300 assembly_YfgL outer 98.3 0.00025 5.4E-09 68.5 23.4 220 153-405 65-299 (377)
317 TIGR03300 assembly_YfgL outer 98.3 0.00025 5.4E-09 68.5 23.4 218 152-405 104-340 (377)
318 KOG1832 HIV-1 Vpr-binding prot 98.2 9.1E-07 2E-11 87.6 3.9 190 186-449 1092-1286(1516)
319 PF11768 DUF3312: Protein of u 98.2 2.3E-05 5E-10 75.1 13.0 79 133-227 252-330 (545)
320 PF06977 SdiA-regulated: SdiA- 98.2 0.00041 8.9E-09 61.5 20.1 208 140-399 21-246 (248)
321 KOG2114 Vacuolar assembly/sort 98.2 0.00025 5.4E-09 70.8 19.5 189 202-449 29-235 (933)
322 PF13360 PQQ_2: PQQ-like domai 98.2 0.0011 2.3E-08 59.5 22.4 216 162-467 2-233 (238)
323 KOG1912 WD40 repeat protein [G 98.1 0.00018 3.9E-09 70.9 16.1 155 200-404 19-187 (1062)
324 KOG3617 WD40 and TPR repeat-co 98.1 0.00038 8.2E-09 69.4 18.2 108 145-309 20-131 (1416)
325 KOG3621 WD40 repeat-containing 98.0 0.00042 9.2E-09 67.8 17.3 162 142-355 35-198 (726)
326 KOG1920 IkappaB kinase complex 97.9 0.0053 1.1E-07 64.1 23.4 200 198-466 70-324 (1265)
327 PF13360 PQQ_2: PQQ-like domai 97.9 0.0026 5.7E-08 56.9 19.0 187 152-405 35-232 (238)
328 COG0823 TolB Periplasmic compo 97.8 0.0019 4.1E-08 62.5 18.0 156 198-405 194-360 (425)
329 PF08596 Lgl_C: Lethal giant l 97.7 0.0011 2.5E-08 63.3 15.1 240 198-466 3-292 (395)
330 KOG3621 WD40 repeat-containing 97.7 0.00027 5.8E-09 69.1 10.4 114 324-462 34-152 (726)
331 PF08553 VID27: VID27 cytoplas 97.7 0.0011 2.4E-08 67.9 14.6 136 257-403 503-647 (794)
332 PRK11138 outer membrane biogen 97.7 0.011 2.4E-07 57.5 21.0 97 293-405 258-355 (394)
333 KOG3617 WD40 and TPR repeat-co 97.6 0.00059 1.3E-08 68.1 11.7 71 142-226 61-131 (1416)
334 PF08553 VID27: VID27 cytoplas 97.6 0.0039 8.6E-08 64.0 17.9 139 161-354 502-647 (794)
335 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0043 9.3E-08 46.7 13.1 102 326-460 2-110 (111)
336 PF04053 Coatomer_WDAD: Coatom 97.6 0.0026 5.7E-08 61.7 15.0 182 198-449 34-215 (443)
337 PF04053 Coatomer_WDAD: Coatom 97.5 0.042 9.2E-07 53.5 22.9 225 138-462 30-260 (443)
338 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.0071 1.5E-07 45.6 13.6 102 281-398 2-109 (111)
339 PF08596 Lgl_C: Lethal giant l 97.5 0.031 6.7E-07 53.6 21.4 254 142-449 3-326 (395)
340 COG3386 Gluconolactonase [Carb 97.5 0.069 1.5E-06 49.3 22.7 227 147-449 31-275 (307)
341 KOG2395 Protein involved in va 97.5 0.004 8.7E-08 59.3 14.4 99 296-404 399-501 (644)
342 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.025 5.4E-07 54.0 20.3 274 140-449 42-347 (353)
343 smart00320 WD40 WD40 repeats. 97.5 0.00028 6E-09 42.0 4.7 39 362-401 2-40 (40)
344 KOG4640 Anaphase-promoting com 97.4 0.00086 1.9E-08 64.9 9.5 79 322-409 19-98 (665)
345 PRK02888 nitrous-oxide reducta 97.4 0.016 3.5E-07 57.6 18.4 110 287-404 285-405 (635)
346 PRK02888 nitrous-oxide reducta 97.4 0.01 2.3E-07 58.9 16.6 113 345-467 295-407 (635)
347 PF07433 DUF1513: Protein of u 97.4 0.04 8.7E-07 50.0 18.9 204 199-464 7-247 (305)
348 PRK11138 outer membrane biogen 97.3 0.048 1E-06 53.0 21.0 229 154-405 70-314 (394)
349 KOG4640 Anaphase-promoting com 97.3 0.0012 2.6E-08 63.9 9.0 94 278-382 20-115 (665)
350 smart00320 WD40 WD40 repeats. 97.3 0.00063 1.4E-08 40.3 4.8 36 316-352 5-40 (40)
351 COG0823 TolB Periplasmic compo 97.3 0.021 4.6E-07 55.3 17.4 195 142-403 194-400 (425)
352 PF03178 CPSF_A: CPSF A subuni 97.2 0.042 9.1E-07 51.7 18.6 115 277-404 87-203 (321)
353 PF06977 SdiA-regulated: SdiA- 97.2 0.041 9E-07 49.0 16.9 198 191-447 17-239 (248)
354 COG3391 Uncharacterized conser 97.1 0.28 6.1E-06 47.3 25.0 194 200-462 77-281 (381)
355 COG3391 Uncharacterized conser 97.1 0.29 6.2E-06 47.2 24.0 198 143-405 76-285 (381)
356 PF14583 Pectate_lyase22: Olig 97.0 0.3 6.6E-06 45.9 22.6 69 148-229 43-113 (386)
357 COG3386 Gluconolactonase [Carb 97.0 0.24 5.3E-06 45.8 20.7 115 272-394 156-277 (307)
358 PF05694 SBP56: 56kDa selenium 97.0 0.13 2.8E-06 48.8 18.7 154 281-450 183-394 (461)
359 PF04841 Vps16_N: Vps16, N-ter 96.9 0.44 9.6E-06 46.3 25.2 62 331-404 186-247 (410)
360 PF03178 CPSF_A: CPSF A subuni 96.9 0.11 2.3E-06 49.0 18.3 194 153-399 42-261 (321)
361 COG3204 Uncharacterized protei 96.9 0.2 4.3E-06 44.8 18.1 174 138-355 83-264 (316)
362 KOG2444 WD40 repeat protein [G 96.8 0.004 8.7E-08 53.0 6.8 106 292-405 71-179 (238)
363 KOG4441 Proteins containing BT 96.8 0.22 4.8E-06 50.6 20.0 103 292-404 382-500 (571)
364 KOG2079 Vacuolar assembly/sort 96.7 0.01 2.2E-07 61.4 9.5 97 335-449 98-195 (1206)
365 PF04841 Vps16_N: Vps16, N-ter 96.6 0.76 1.6E-05 44.7 29.0 86 286-385 186-272 (410)
366 KOG2079 Vacuolar assembly/sort 96.6 0.0086 1.9E-07 61.9 8.6 101 292-403 100-203 (1206)
367 cd00216 PQQ_DH Dehydrogenases 96.6 0.52 1.1E-05 47.2 21.0 71 155-232 63-134 (488)
368 PF12894 Apc4_WD40: Anaphase-p 96.5 0.0099 2.1E-07 37.4 5.4 32 139-171 10-41 (47)
369 PHA02713 hypothetical protein; 96.5 0.075 1.6E-06 54.0 14.7 93 302-404 433-534 (557)
370 KOG2395 Protein involved in va 96.4 0.073 1.6E-06 51.1 12.6 143 155-355 348-501 (644)
371 KOG2377 Uncharacterized conser 96.4 0.35 7.7E-06 45.8 16.7 125 136-311 62-187 (657)
372 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.31 6.7E-06 42.6 15.1 81 292-382 64-145 (354)
373 COG3490 Uncharacterized protei 96.3 0.22 4.8E-06 44.2 14.3 111 281-400 70-186 (366)
374 PF10647 Gmad1: Lipoprotein Lp 96.3 0.64 1.4E-05 41.9 18.2 118 280-399 67-192 (253)
375 KOG4441 Proteins containing BT 96.3 0.18 3.9E-06 51.2 16.0 103 292-404 429-547 (571)
376 PF00930 DPPIV_N: Dipeptidyl p 96.3 0.6 1.3E-05 44.6 18.9 103 283-394 239-349 (353)
377 KOG3630 Nuclear pore complex, 96.3 0.082 1.8E-06 55.4 13.1 164 189-391 93-262 (1405)
378 KOG4649 PQQ (pyrrolo-quinoline 96.2 0.52 1.1E-05 41.3 15.6 112 284-407 16-127 (354)
379 PF10647 Gmad1: Lipoprotein Lp 96.2 0.4 8.6E-06 43.2 16.0 155 280-450 25-186 (253)
380 PF12894 Apc4_WD40: Anaphase-p 96.1 0.02 4.3E-07 36.0 5.2 33 321-354 9-41 (47)
381 PRK13616 lipoprotein LpqB; Pro 96.1 0.26 5.7E-06 50.1 15.9 143 279-447 350-514 (591)
382 COG3204 Uncharacterized protei 95.8 1.3 2.8E-05 39.7 18.5 168 192-404 82-264 (316)
383 PF02897 Peptidase_S9_N: Proly 95.8 2.1 4.6E-05 41.9 26.4 201 143-403 126-357 (414)
384 TIGR02604 Piru_Ver_Nterm putat 95.7 0.67 1.5E-05 44.5 16.3 151 279-449 14-203 (367)
385 PF02897 Peptidase_S9_N: Proly 95.6 2.5 5.3E-05 41.4 25.1 205 146-405 175-406 (414)
386 KOG2444 WD40 repeat protein [G 95.6 0.053 1.2E-06 46.3 7.2 61 292-355 115-178 (238)
387 KOG1916 Nuclear protein, conta 95.6 0.017 3.7E-07 58.7 4.9 82 138-227 130-214 (1283)
388 PF15390 DUF4613: Domain of un 95.5 0.5 1.1E-05 46.4 14.3 159 279-466 20-188 (671)
389 PF12234 Rav1p_C: RAVE protein 95.5 0.51 1.1E-05 47.8 14.9 112 327-450 33-149 (631)
390 KOG4499 Ca2+-binding protein R 95.5 0.94 2E-05 39.1 14.1 108 279-393 158-275 (310)
391 PHA03098 kelch-like protein; P 95.3 1.2 2.5E-05 45.4 17.4 103 292-404 391-512 (534)
392 COG3490 Uncharacterized protei 95.3 2 4.3E-05 38.4 21.6 212 137-405 64-312 (366)
393 PRK13616 lipoprotein LpqB; Pro 95.3 1.4 3E-05 45.0 17.4 115 281-405 399-527 (591)
394 PRK10115 protease 2; Provision 95.2 4.9 0.00011 42.2 23.4 73 282-355 175-256 (686)
395 PF00780 CNH: CNH domain; Int 95.2 2.4 5.3E-05 38.7 20.0 117 280-405 37-167 (275)
396 PF08728 CRT10: CRT10; InterP 95.1 2.6 5.5E-05 43.4 18.3 118 280-402 102-245 (717)
397 PF10313 DUF2415: Uncharacteri 95.1 0.082 1.8E-06 32.2 4.9 33 141-173 1-35 (43)
398 PF15390 DUF4613: Domain of un 94.8 0.66 1.4E-05 45.6 12.8 122 277-404 55-187 (671)
399 PHA02713 hypothetical protein; 94.7 1.1 2.4E-05 45.6 15.0 51 292-345 353-408 (557)
400 COG5276 Uncharacterized conser 94.6 3.2 7E-05 37.3 19.9 149 278-451 86-235 (370)
401 PF00780 CNH: CNH domain; Int 94.6 3.5 7.6E-05 37.6 25.1 156 152-355 6-166 (275)
402 TIGR03606 non_repeat_PQQ dehyd 94.4 5.6 0.00012 39.0 20.1 56 277-333 28-88 (454)
403 PF05694 SBP56: 56kDa selenium 94.3 5.2 0.00011 38.4 20.4 169 287-470 138-348 (461)
404 cd00216 PQQ_DH Dehydrogenases 94.3 6.6 0.00014 39.4 21.4 96 293-405 303-426 (488)
405 KOG2247 WD40 repeat-containing 94.2 0.0068 1.5E-07 57.3 -1.9 142 201-395 39-180 (615)
406 KOG1916 Nuclear protein, conta 94.1 0.043 9.2E-07 55.9 3.2 125 272-406 126-268 (1283)
407 PHA02790 Kelch-like protein; P 94.0 2.5 5.3E-05 42.3 15.6 100 292-404 364-471 (480)
408 PF06433 Me-amine-dh_H: Methyl 93.9 5.5 0.00012 37.0 18.8 105 294-405 198-322 (342)
409 PF10313 DUF2415: Uncharacteri 93.8 0.22 4.8E-06 30.3 4.7 32 373-404 1-34 (43)
410 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.7 8.9 0.00019 38.8 23.2 21 292-312 316-336 (527)
411 PHA03098 kelch-like protein; P 93.6 5.1 0.00011 40.7 17.5 103 292-404 344-465 (534)
412 PF06433 Me-amine-dh_H: Methyl 93.6 1.6 3.5E-05 40.5 12.2 60 302-370 270-330 (342)
413 PRK10115 protease 2; Provision 93.6 11 0.00024 39.5 26.8 149 279-446 316-472 (686)
414 KOG3630 Nuclear pore complex, 93.5 1.5 3.2E-05 46.6 12.9 153 280-450 102-264 (1405)
415 PF08728 CRT10: CRT10; InterP 93.2 2.3 5E-05 43.7 13.5 175 153-353 49-245 (717)
416 TIGR02604 Piru_Ver_Nterm putat 93.0 8.7 0.00019 36.8 24.3 62 279-345 124-204 (367)
417 PF14761 HPS3_N: Hermansky-Pud 92.8 3.2 7E-05 35.7 11.9 106 293-404 30-164 (215)
418 PF10168 Nup88: Nuclear pore c 92.8 15 0.00031 38.6 23.2 95 198-313 86-183 (717)
419 PF07995 GSDH: Glucose / Sorbo 92.6 2.1 4.5E-05 40.4 12.0 161 280-445 3-197 (331)
420 PF14870 PSII_BNR: Photosynthe 92.6 8.4 0.00018 35.6 16.1 158 138-351 142-301 (302)
421 PF12234 Rav1p_C: RAVE protein 91.8 3.2 7E-05 42.2 12.6 110 155-310 43-157 (631)
422 KOG4499 Ca2+-binding protein R 91.8 8.2 0.00018 33.6 13.2 56 284-342 217-272 (310)
423 PF14870 PSII_BNR: Photosynthe 91.4 12 0.00025 34.7 16.4 153 276-449 142-295 (302)
424 PF12657 TFIIIC_delta: Transcr 90.8 3.2 6.8E-05 34.9 10.0 32 279-310 86-122 (173)
425 PHA02790 Kelch-like protein; P 90.7 20 0.00042 35.9 17.1 100 292-404 320-424 (480)
426 PF07569 Hira: TUP1-like enhan 90.5 1.7 3.7E-05 38.1 8.3 68 335-404 21-96 (219)
427 PF10168 Nup88: Nuclear pore c 90.4 9.3 0.0002 40.0 14.8 92 373-471 85-186 (717)
428 KOG2280 Vacuolar assembly/sort 90.4 22 0.00047 36.6 16.4 70 141-227 44-113 (829)
429 PF14727 PHTB1_N: PTHB1 N-term 90.4 18 0.0004 35.1 17.9 154 288-461 34-201 (418)
430 PF14655 RAB3GAP2_N: Rab3 GTPa 89.3 3.7 8E-05 39.7 10.1 76 321-405 305-400 (415)
431 TIGR03606 non_repeat_PQQ dehyd 89.3 16 0.00034 35.9 14.5 114 323-450 29-166 (454)
432 COG5167 VID27 Protein involved 88.9 11 0.00023 36.8 12.6 60 292-355 574-633 (776)
433 PF14583 Pectate_lyase22: Olig 88.8 9.9 0.00021 36.1 12.3 114 284-407 86-226 (386)
434 PF12768 Rax2: Cortical protei 88.7 19 0.00041 32.9 14.2 77 278-355 36-124 (281)
435 COG5167 VID27 Protein involved 88.6 3.7 8.1E-05 39.8 9.4 128 264-404 496-633 (776)
436 COG4590 ABC-type uncharacteriz 88.5 8.4 0.00018 36.9 11.4 169 274-468 216-390 (733)
437 PF05096 Glu_cyclase_2: Glutam 88.0 20 0.00043 32.2 23.4 193 132-392 34-250 (264)
438 PF07569 Hira: TUP1-like enhan 87.9 5.2 0.00011 35.1 9.5 67 286-355 18-96 (219)
439 PF07676 PD40: WD40-like Beta 87.8 2.8 6E-05 24.9 5.6 30 371-400 7-38 (39)
440 KOG4460 Nuclear pore complex, 87.2 10 0.00023 37.0 11.4 93 374-472 105-206 (741)
441 PF07995 GSDH: Glucose / Sorbo 87.0 27 0.0006 32.9 15.9 26 199-225 4-29 (331)
442 KOG2377 Uncharacterized conser 86.8 19 0.00042 34.7 12.7 104 197-341 67-170 (657)
443 PF12657 TFIIIC_delta: Transcr 86.7 6.5 0.00014 33.0 9.2 32 373-404 86-122 (173)
444 KOG4460 Nuclear pore complex, 86.3 13 0.00028 36.4 11.5 84 324-408 104-203 (741)
445 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.2 41 0.00089 34.1 24.9 51 302-355 272-334 (527)
446 PLN02153 epithiospecifier prot 86.1 31 0.00067 32.6 17.5 12 302-313 160-171 (341)
447 PRK13684 Ycf48-like protein; P 86.1 31 0.00067 32.6 16.9 157 140-353 172-330 (334)
448 PF14655 RAB3GAP2_N: Rab3 GTPa 84.7 12 0.00027 36.1 10.9 91 270-369 299-407 (415)
449 KOG2247 WD40 repeat-containing 83.9 0.22 4.9E-06 47.5 -1.1 147 145-352 39-186 (615)
450 KOG1900 Nuclear pore complex, 83.0 21 0.00046 39.2 12.5 73 278-355 178-273 (1311)
451 PLN02193 nitrile-specifier pro 83.0 53 0.0011 32.8 18.7 61 292-355 280-352 (470)
452 PF14727 PHTB1_N: PTHB1 N-term 83.0 48 0.001 32.3 25.4 138 55-227 62-205 (418)
453 TIGR02276 beta_rpt_yvtn 40-res 81.6 6.3 0.00014 23.6 5.3 31 288-320 1-31 (42)
454 KOG1983 Tomosyn and related SN 80.4 32 0.00069 37.8 13.2 36 136-172 31-66 (993)
455 PF07676 PD40: WD40-like Beta 79.6 8.2 0.00018 22.7 5.2 30 277-306 7-38 (39)
456 TIGR02276 beta_rpt_yvtn 40-res 79.5 10 0.00022 22.6 5.7 24 382-405 1-24 (42)
457 PF12768 Rax2: Cortical protei 79.4 27 0.00059 31.9 10.6 92 300-401 15-121 (281)
458 KOG3616 Selective LIM binding 78.9 81 0.0018 32.7 14.1 30 198-227 16-45 (1636)
459 KOG1900 Nuclear pore complex, 78.6 31 0.00067 38.0 11.9 79 322-406 177-275 (1311)
460 PLN00033 photosystem II stabil 78.6 67 0.0015 31.2 16.8 69 279-351 328-396 (398)
461 PLN02193 nitrile-specifier pro 78.2 77 0.0017 31.6 15.0 61 292-355 330-411 (470)
462 COG5276 Uncharacterized conser 77.9 55 0.0012 29.8 25.6 207 133-405 79-287 (370)
463 COG4590 ABC-type uncharacteriz 76.8 16 0.00035 35.2 8.3 166 140-355 220-387 (733)
464 KOG1897 Damage-specific DNA bi 76.5 1.2E+02 0.0025 32.8 20.7 156 142-355 776-943 (1096)
465 PF11715 Nup160: Nucleoporin N 75.1 12 0.00026 38.1 8.1 64 292-355 159-249 (547)
466 PLN02153 epithiospecifier prot 75.1 76 0.0016 30.0 13.2 52 301-355 217-285 (341)
467 PF01731 Arylesterase: Arylest 75.0 13 0.00029 26.9 5.9 32 373-404 54-85 (86)
468 TIGR03118 PEPCTERM_chp_1 conse 73.9 74 0.0016 29.3 19.5 214 143-405 25-281 (336)
469 COG3823 Glutamine cyclotransfe 73.8 58 0.0013 28.1 13.6 40 133-174 36-79 (262)
470 PF03088 Str_synth: Strictosid 72.5 26 0.00055 25.6 6.9 40 299-342 35-74 (89)
471 KOG1897 Damage-specific DNA bi 72.4 1.5E+02 0.0032 32.1 21.6 72 281-354 586-659 (1096)
472 TIGR03118 PEPCTERM_chp_1 conse 71.7 84 0.0018 29.0 13.8 121 281-404 25-171 (336)
473 PF12341 DUF3639: Protein of u 71.4 14 0.0003 20.1 3.9 26 324-352 2-27 (27)
474 PRK13684 Ycf48-like protein; P 71.2 94 0.002 29.3 17.5 110 278-398 172-283 (334)
475 PF02333 Phytase: Phytase; In 70.6 1E+02 0.0022 29.6 24.6 123 279-404 156-291 (381)
476 COG5290 IkappaB kinase complex 70.5 1.5E+02 0.0032 31.3 17.1 72 326-404 249-325 (1243)
477 PF11715 Nup160: Nucleoporin N 69.6 14 0.00029 37.8 6.9 70 335-407 157-252 (547)
478 PF05096 Glu_cyclase_2: Glutam 69.2 88 0.0019 28.2 21.6 195 195-449 43-250 (264)
479 PF07250 Glyoxal_oxid_N: Glyox 67.7 91 0.002 27.8 11.7 48 304-355 49-100 (243)
480 KOG4659 Uncharacterized conser 67.5 2.2E+02 0.0047 32.1 16.0 17 275-291 658-674 (1899)
481 TIGR03548 mutarot_permut cycli 66.6 1.1E+02 0.0025 28.5 21.2 62 292-355 125-195 (323)
482 PF13449 Phytase-like: Esteras 65.8 1.2E+02 0.0026 28.5 22.5 121 280-403 86-249 (326)
483 PF03088 Str_synth: Strictosid 65.8 40 0.00087 24.6 6.7 50 342-398 33-82 (89)
484 PF14781 BBS2_N: Ciliary BBSom 65.2 68 0.0015 25.5 14.0 76 145-228 3-83 (136)
485 PF08801 Nucleoporin_N: Nup133 64.9 58 0.0013 31.9 10.1 31 324-355 190-220 (422)
486 PF11635 Med16: Mediator compl 61.8 2.3E+02 0.005 30.4 22.7 74 323-398 259-345 (753)
487 PF14781 BBS2_N: Ciliary BBSom 61.1 82 0.0018 25.0 12.9 116 203-355 5-126 (136)
488 TIGR03548 mutarot_permut cycli 60.9 1.4E+02 0.0031 27.8 12.2 13 301-313 271-283 (323)
489 smart00564 PQQ beta-propeller 60.3 20 0.00043 19.9 3.6 19 337-355 7-25 (33)
490 KOG3522 Predicted guanine nucl 59.8 1E+02 0.0022 32.5 10.5 194 207-454 546-744 (925)
491 PRK14131 N-acetylneuraminic ac 59.6 1.7E+02 0.0037 28.1 18.7 42 301-344 189-230 (376)
492 PF10395 Utp8: Utp8 family; I 58.2 2.4E+02 0.0051 29.4 20.8 30 198-227 131-160 (670)
493 KOG3616 Selective LIM binding 56.9 27 0.00058 35.9 5.9 68 323-401 14-81 (1636)
494 PF14761 HPS3_N: Hermansky-Pud 56.1 1.4E+02 0.003 26.0 13.6 50 337-392 29-78 (215)
495 PF10214 Rrn6: RNA polymerase 55.1 3E+02 0.0065 29.6 28.1 238 89-356 29-278 (765)
496 KOG2714 SETA binding protein S 54.0 80 0.0017 30.4 8.1 175 151-404 192-372 (465)
497 PF13449 Phytase-like: Esteras 52.9 2E+02 0.0044 27.0 24.2 83 140-226 19-120 (326)
498 KOG1898 Splicing factor 3b, su 52.6 3.5E+02 0.0076 29.7 15.4 121 190-354 927-1048(1205)
499 PLN00033 photosystem II stabil 51.1 2.4E+02 0.0053 27.4 17.2 148 281-449 241-390 (398)
500 TIGR02171 Fb_sc_TIGR02171 Fibr 50.6 1.9E+02 0.004 31.2 10.9 85 300-392 328-418 (912)
No 1
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=5.4e-71 Score=491.37 Aligned_cols=386 Identities=36% Similarity=0.634 Sum_probs=328.9
Q ss_pred hcccccchhhhhccccchhhhhhhhccccccceeeEEecCC--cccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcc
Q 011709 35 AHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQ--LEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPR 112 (479)
Q Consensus 35 ~~~~~~~~~~~~w~~~~~~~y~~~~~~~l~wpsl~~~w~p~--~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 112 (479)
.++..++|+|++||||+|+|||++.+|.|+||||+|||+|+ ..+..+...|||++||+|+|+++|+|+|+++.++...
T Consensus 11 ~~~~~i~Eey~~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~ 90 (422)
T KOG0264|consen 11 LEQRQINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDD 90 (422)
T ss_pred hccccccchhhHHhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCcc
Confidence 35569999999999999999999999999999999999998 4455677889999999999999999999997765432
Q ss_pred hhhh--hcccccCc----ccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCC
Q 011709 113 VAAA--EHISQFNE----EARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSR 186 (479)
Q Consensus 113 ~~~~--~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 186 (479)
.... .......+ ...+.++++.+.+.|.|+|++++++|+++.++|+++..+.|+|||+.+........+ ...
T Consensus 91 ~~~~~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--~~~ 168 (422)
T KOG0264|consen 91 AQFEDKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--ECR 168 (422)
T ss_pred cccccccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--cCC
Confidence 1111 11111111 134558889999999999999999999999999999999999999998866654433 568
Q ss_pred CcEEEeccCCCceeeeeecCCC-CcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCC
Q 011709 187 PDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265 (479)
Q Consensus 187 ~~~~~~~h~~~~v~~l~~s~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (479)
+...+.||++. .++|+|++.. .+|++|+.|++|++||++..... .
T Consensus 169 Pdl~L~gH~~e-g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~---------------------------------~ 214 (422)
T KOG0264|consen 169 PDLRLKGHEKE-GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE---------------------------------D 214 (422)
T ss_pred CceEEEeeccc-ccccccccccceeEeeccCCCcEEEEeccccccC---------------------------------C
Confidence 88899999984 6899999974 48999999999999999754321 1
Q ss_pred CCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC
Q 011709 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345 (479)
Q Consensus 266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d 345 (479)
....+...+.+|...|++++|++....+|+++++|+.+.|||+|++..+......+|.+.|+|++|+|.++.+|||||.|
T Consensus 215 ~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D 294 (422)
T KOG0264|consen 215 KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD 294 (422)
T ss_pred ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCC
Confidence 33445688999999999999999998999999999999999999744446677789999999999999999999999999
Q ss_pred CcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEE
Q 011709 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (479)
Q Consensus 346 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 425 (479)
++|.+||+|++. .+++++.+|...|.+|.|+|+...+|||++.|+.+.|||+...+.++..+++++ +||+|+|+
T Consensus 295 ~tV~LwDlRnL~-----~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d-gppEllF~ 368 (422)
T KOG0264|consen 295 KTVALWDLRNLN-----KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED-GPPELLFI 368 (422)
T ss_pred CcEEEeechhcc-----cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc-CCcceeEE
Confidence 999999999974 689999999999999999999999999999999999999999999988666666 89999999
Q ss_pred eCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 426 HAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 426 ~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
|+||+. |.++.|+|....+++.-.. |+.+.||.....
T Consensus 369 HgGH~~kV~DfsWnp~ePW~I~Svae----DN~LqIW~~s~~ 406 (422)
T KOG0264|consen 369 HGGHTAKVSDFSWNPNEPWTIASVAE----DNILQIWQMAEN 406 (422)
T ss_pred ecCcccccccccCCCCCCeEEEEecC----CceEEEeecccc
Confidence 999999 9999999998765554443 999999976643
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.2e-46 Score=323.06 Aligned_cols=285 Identities=23% Similarity=0.346 Sum_probs=242.8
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
..+-+|.++|.|++|+| ++..||+|+.|.++|+||+.+. .+..+.++|.. .|.|++|+|||+.||+
T Consensus 109 sS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~Te------------Tp~~t~KgH~~-WVlcvawsPDgk~iAS 174 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTE------------TPLFTCKGHKN-WVLCVAWSPDGKKIAS 174 (480)
T ss_pred cccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCC------------CcceeecCCcc-EEEEEEECCCcchhhc
Confidence 34568999999999999 9999999999999999999998 88899999997 5999999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccc--------cCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAK--------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (479)
|+.||+|++||..++......-..... ...........+....++.+++|+......+..+.+|+.+|+|+.
T Consensus 175 G~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvr 254 (480)
T KOG0271|consen 175 GSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVR 254 (480)
T ss_pred cccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEE
Confidence 999999999999887553221111000 000111122445556799999999999999999999999999999
Q ss_pred EeeCCCcEEEEEecCCeEEEEeCCCCCC----------------------------------------------------
Q 011709 286 FCPSSAQEFCSVGDDSCLILWDARVGTS---------------------------------------------------- 313 (479)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------------------------------------------- 313 (479)
|-.+| ++++++.|++|++|+...+..
T Consensus 255 wGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 255 WGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred EcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 97655 899999999999999765331
Q ss_pred -------------------------CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee
Q 011709 314 -------------------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 314 -------------------------~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
+.+..+.+|..-|+.+.||| +++|||++|.|..|++||-++ |+.+.+|
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~t------Gk~lasf 405 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRT------GKFLASF 405 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCC------cchhhhh
Confidence 01223457889999999999 999999999999999999999 8999999
Q ss_pred cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeec
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDN 447 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~ 447 (479)
++|-++|+.++|+.|.+ ||++||.|.+++|||+++- .+.+...||.+ |.++.|+|||+.+++|
T Consensus 406 RGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tk---------------Kl~~DLpGh~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 406 RGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTK---------------KLKQDLPGHADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred hhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeee---------------eecccCCCCCceEEEEEecCCCceeecC
Confidence 99999999999999998 7889999999999999983 56778899998 9999999999999999
Q ss_pred CCCccccceeEEEEe
Q 011709 448 NHGLSYANKKIKIYC 462 (479)
Q Consensus 448 ~~~~~~~d~~i~i~~ 462 (479)
+. |+.+++|.
T Consensus 470 gk-----dkv~~lw~ 479 (480)
T KOG0271|consen 470 GK-----DKVLRLWR 479 (480)
T ss_pred CC-----ceEEEeec
Confidence 99 99999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.7e-45 Score=320.02 Aligned_cols=247 Identities=22% Similarity=0.344 Sum_probs=227.7
Q ss_pred eEEEecCCCceeEEEecCC-CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 133 KHKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~-~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
+....+|.+.|.++.|+|. +..-||||+.||+|++|++.+. .++..+.+|.. .|..++|+|+|++|
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e------------~~l~~l~gH~~-RVs~VafHPsG~~L 276 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE------------TPLQDLEGHLA-RVSRVAFHPSGKFL 276 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC------------cchhhhhcchh-hheeeeecCCCcee
Confidence 5677899999999999997 4779999999999999999987 77889999997 58899999999999
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
+|++.|.+-++||++++.. +...+||...|.+++|+++|
T Consensus 277 ~TasfD~tWRlWD~~tk~E----------------------------------------lL~QEGHs~~v~~iaf~~DG- 315 (459)
T KOG0272|consen 277 GTASFDSTWRLWDLETKSE----------------------------------------LLLQEGHSKGVFSIAFQPDG- 315 (459)
T ss_pred eecccccchhhcccccchh----------------------------------------hHhhcccccccceeEecCCC-
Confidence 9999999999999986543 25567899999999999999
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
.+++||+.|..-+|||+|+++ ++..+.+|..+|.+|+|+| +|..|||||.|++++|||+|. ...+.++.+|
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr--~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~------r~~ly~ipAH 386 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGR--CIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRM------RSELYTIPAH 386 (459)
T ss_pred ceeeccCccchhheeecccCc--EEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecc------cccceecccc
Confidence 799999999999999999999 7889999999999999999 999999999999999999998 6789999999
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~ 450 (479)
..-|+.|.|+|...+.|+|+|.|++++||.-... +++-+..||.. |.++.+++|+.++++++.
T Consensus 387 ~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---------------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~- 450 (459)
T KOG0272|consen 387 SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---------------SPLKSLAGHEGKVISLDISPDSQAIATSSF- 450 (459)
T ss_pred cchhhheEecccCCeEEEEcccCcceeeecCCCc---------------ccchhhcCCccceEEEEeccCCceEEEecc-
Confidence 9999999999976678999999999999998773 45667899998 999999999999999999
Q ss_pred ccccceeEEEEe
Q 011709 451 LSYANKKIKIYC 462 (479)
Q Consensus 451 ~~~~d~~i~i~~ 462 (479)
|.+|++|.
T Consensus 451 ----DRT~KLW~ 458 (459)
T KOG0272|consen 451 ----DRTIKLWR 458 (459)
T ss_pred ----Cceeeecc
Confidence 99999995
No 4
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=302.60 Aligned_cols=355 Identities=26% Similarity=0.488 Sum_probs=271.8
Q ss_pred chhhhhhhhccccccceeeEEecCCc---ccCCCcceEEEEEEEeeCCCCCceEEEEEEEecC-cchh---hhhcccccC
Q 011709 51 VPVLYDWLANHNLVWPSLSCRWGPQL---EQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVK-PRVA---AAEHISQFN 123 (479)
Q Consensus 51 ~~~~y~~~~~~~l~wpsl~~~w~p~~---~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~-~~~~---~~~~~~~~~ 123 (479)
-|..|.+++..+..||+|+++-.|+. ++..+....-+..||++.....|.|.|..+..+. .... ..+....-+
T Consensus 56 DpsaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~edd 135 (440)
T KOG0302|consen 56 DPSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDD 135 (440)
T ss_pred CHHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccc
Confidence 47899999999999999999988862 2334443344556888888889999888764322 1111 111111122
Q ss_pred cccCCCceeeEEEecCCCceeEEEecCC-CCcEEEEEeCCCcEEEEECCCCCCccc----cCCCCCCCCcEEEeccCCCc
Q 011709 124 EEARSPFVKKHKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHA----VLGATNSRPDLILTGHQDNA 198 (479)
Q Consensus 124 ~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~~lat~s~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~h~~~~ 198 (479)
++.+.|. ...+.++|.+.|++++-++. +..+.|+-+..|.|+|||+........ .......+++.++.+|.+ .
T Consensus 136 edD~~P~-~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~-E 213 (440)
T KOG0302|consen 136 EDDRKPQ-IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG-E 213 (440)
T ss_pred hhhcccc-ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc-c
Confidence 2232333 35677899999999998885 567888889999999999976532211 111234578899999997 4
Q ss_pred eeeeeecCC-CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC
Q 011709 199 EFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (479)
Q Consensus 199 v~~l~~s~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (479)
.++|+|||- -..|+||..-+.|++|...++.-.... ..+.+|
T Consensus 214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~-------------------------------------~Pf~gH 256 (440)
T KOG0302|consen 214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ-------------------------------------RPFTGH 256 (440)
T ss_pred ceeeecccccccccccCccccceEeeeeccCceeecC-------------------------------------cccccc
Confidence 799999995 336999999999999988763221111 346679
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCC-CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~ 356 (479)
+..|.+++|+|....+|++||-||+|+|||+|.+. .+++.+ +.|.+.|+.|+|+. ...+||+|++||+++|||+|..
T Consensus 257 ~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~ 334 (440)
T KOG0302|consen 257 TKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQF 334 (440)
T ss_pred ccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccC-CcceeeecCCCceEEEEEhhhc
Confidence 99999999999988999999999999999999984 334444 79999999999998 6679999999999999999997
Q ss_pred CCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCC--C--CCCCCCCeeEEEeCCCCCc
Q 011709 357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG--P--RTTNYPAGLFFQHAGHSPS 432 (479)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~--~--~~~~~~~~l~~~~~gh~~~ 432 (479)
+. ++|+..++.|..+|++|.|+|....+|+++|.|.+|.|||+......-... . .....||+|+|+|.|+..+
T Consensus 335 ~~---~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~ 411 (440)
T KOG0302|consen 335 KS---GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEV 411 (440)
T ss_pred cC---CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHh
Confidence 76 589999999999999999999988899999999999999998743311111 1 1125899999999999999
Q ss_pred eeEEEecCC-CeeeecCC
Q 011709 433 SSIKFVLRE-SCLVDNNH 449 (479)
Q Consensus 433 ~~~~~sp~~-~~l~~~~~ 449 (479)
..+.|+++- .+|++++.
T Consensus 412 KevhWH~QiPG~lvsTa~ 429 (440)
T KOG0302|consen 412 KEVHWHRQIPGLLVSTAI 429 (440)
T ss_pred hhheeccCCCCeEEEecc
Confidence 999999874 57777766
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=300.72 Aligned_cols=246 Identities=24% Similarity=0.365 Sum_probs=222.2
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCcEEE
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLS 213 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~l~s 213 (479)
.++-..+|..+.|++ ++..|||||.+|.++||+.... ....+|.||+.. |.++.|+|. +..|+|
T Consensus 171 Q~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~------------~~~~~l~gH~~~-v~~~~fhP~~~~~~lat 236 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQC------------NLLQTLRGHTSR-VGAAVFHPVDSDLNLAT 236 (459)
T ss_pred hccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCc------------ceeEEEeccccc-eeeEEEccCCCccceee
Confidence 356678999999999 8899999999999999999887 677899999985 889999997 558999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
|+.||++++|++.+. .++..+.+|...|..++|+|+| .+
T Consensus 237 ~s~Dgtvklw~~~~e----------------------------------------~~l~~l~gH~~RVs~VafHPsG-~~ 275 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQE----------------------------------------TPLQDLEGHLARVSRVAFHPSG-KF 275 (459)
T ss_pred eccCCceeeeccCCC----------------------------------------cchhhhhcchhhheeeeecCCC-ce
Confidence 999999999998643 2457889999999999999999 79
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
|+|++.|.+-++||++++. .+....+|...|.+++|+| +|.+++|||.|..-+|||+|+ +.++..+.+|..
T Consensus 276 L~TasfD~tWRlWD~~tk~--ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRt------gr~im~L~gH~k 346 (459)
T KOG0272|consen 276 LGTASFDSTWRLWDLETKS--ELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRT------GRCIMFLAGHIK 346 (459)
T ss_pred eeecccccchhhcccccch--hhHhhcccccccceeEecC-CCceeeccCccchhheeeccc------CcEEEEeccccc
Confidence 9999999999999999988 4556679999999999999 999999999999999999999 899999999999
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEec-CCCeeeecCCCc
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVL-RESCLVDNNHGL 451 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp-~~~~l~~~~~~~ 451 (479)
+|.+|+|+|+|- .|||||.|++++|||+++. ..++...+|++ |+.|+|+| .|.+|++++.
T Consensus 347 ~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r---------------~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy-- 408 (459)
T KOG0272|consen 347 EILSVAFSPNGY-HLATGSSDNTCKVWDLRMR---------------SELYTIPAHSNLVSQVKYSPQEGYFLVTASY-- 408 (459)
T ss_pred ceeeEeECCCce-EEeecCCCCcEEEeeeccc---------------ccceecccccchhhheEecccCCeEEEEccc--
Confidence 999999999997 5899999999999999984 33677889998 89999999 5778888888
Q ss_pred cccceeEEEEeeccc
Q 011709 452 SYANKKIKIYCHLEA 466 (479)
Q Consensus 452 ~~~d~~i~i~~~~~~ 466 (479)
|+.++||.....
T Consensus 409 ---D~t~kiWs~~~~ 420 (459)
T KOG0272|consen 409 ---DNTVKIWSTRTW 420 (459)
T ss_pred ---CcceeeecCCCc
Confidence 999999976655
No 6
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-38 Score=285.57 Aligned_cols=337 Identities=19% Similarity=0.297 Sum_probs=257.9
Q ss_pred cccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCc
Q 011709 63 LVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGE 142 (479)
Q Consensus 63 l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 142 (479)
-+-|.+.|.|.|.. +.+| ++|+.+-...+|++.-.......+..++. +.-.-.+...-...
T Consensus 177 ~~~~V~~~~WnP~~--------~~ll----asg~~~s~ari~~l~e~~~~~~~q~~lrh-------~~~~~~~s~~~nkd 237 (524)
T KOG0273|consen 177 HESEVFICAWNPLR--------DGLL----ASGSGDSTARIWNLLENSNIGSTQLVLRH-------CIREGGKSVPSNKD 237 (524)
T ss_pred CCCceEEEecCchh--------hhhh----hccCCccceeeeeehhhccccchhhhhhh-------hhhhhcccCCccCC
Confidence 34588999999964 2222 55666667777765421111111111110 00001122334568
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEE
Q 011709 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~v 222 (479)
|++++|+. +|.+||+|+.||.++||+.... ...++..|.+ +|++|.|+..|.+|++++.||++.+
T Consensus 238 VT~L~Wn~-~G~~LatG~~~G~~riw~~~G~-------------l~~tl~~Hkg-PI~slKWnk~G~yilS~~vD~ttil 302 (524)
T KOG0273|consen 238 VTSLDWNN-DGTLLATGSEDGEARIWNKDGN-------------LISTLGQHKG-PIFSLKWNKKGTYILSGGVDGTTIL 302 (524)
T ss_pred cceEEecC-CCCeEEEeecCcEEEEEecCch-------------hhhhhhccCC-ceEEEEEcCCCCEEEeccCCccEEE
Confidence 99999999 8999999999999999998764 4567888887 6999999999999999999999999
Q ss_pred EecCCCccccccCCcccccCCCC-CceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC
Q 011709 223 WSIQDHITSSATDPATAKSAGSS-GSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (479)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (479)
||..++.....+........... ..-........++.+.++......|+.++.+|.+.|+++.|+|.+ .+|+++++|+
T Consensus 303 wd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~ 381 (524)
T KOG0273|consen 303 WDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDG 381 (524)
T ss_pred EeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ceEEEecCCC
Confidence 99987765444333211100000 001112223456667777778888999999999999999999999 7999999999
Q ss_pred eEEEEeCCCCCCCceeeeccCCCCeEEEEecCC--------CCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--------DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--------~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
+++||.+.... +...+.+|...|..+.|+|. .+..+++++.|++|++||+.. +.+++.|..|..
T Consensus 382 TlkiWs~~~~~--~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~------gv~i~~f~kH~~ 453 (524)
T KOG0273|consen 382 TLKIWSMGQSN--SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES------GVPIHTLMKHQE 453 (524)
T ss_pred eeEeeecCCCc--chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC------CceeEeeccCCC
Confidence 99999988877 67888899999999999983 245899999999999999999 899999999999
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccc
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSY 453 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~ 453 (479)
+|++++|+|++++ +|+|+.||.|.||+++.+ +++-...|...|..++|+.+|..|.+.-.
T Consensus 454 pVysvafS~~g~y-lAsGs~dg~V~iws~~~~---------------~l~~s~~~~~~Ifel~Wn~~G~kl~~~~s---- 513 (524)
T KOG0273|consen 454 PVYSVAFSPNGRY-LASGSLDGCVHIWSTKTG---------------KLVKSYQGTGGIFELCWNAAGDKLGACAS---- 513 (524)
T ss_pred ceEEEEecCCCcE-EEecCCCCeeEeccccch---------------heeEeecCCCeEEEEEEcCCCCEEEEEec----
Confidence 9999999999996 789999999999999885 55666777777999999999988877766
Q ss_pred cceeEEEEee
Q 011709 454 ANKKIKIYCH 463 (479)
Q Consensus 454 ~d~~i~i~~~ 463 (479)
|+.+++-+.
T Consensus 514 -d~~vcvldl 522 (524)
T KOG0273|consen 514 -DGSVCVLDL 522 (524)
T ss_pred -CCCceEEEe
Confidence 889988764
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.7e-39 Score=304.00 Aligned_cols=270 Identities=25% Similarity=0.441 Sum_probs=230.1
Q ss_pred CCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCcc-------------------ccCCCCCCCC
Q 011709 127 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH-------------------AVLGATNSRP 187 (479)
Q Consensus 127 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~-------------------~~~~~~~~~~ 187 (479)
..|.+.......-...++|..|++ ++.+||.|-.|..|++|.+.....+. ..........
T Consensus 365 ~lpSic~YT~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 365 SLPSICMYTFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred CCCcEEEEEEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence 345566666666677899999999 77799999999999999998432110 0111122233
Q ss_pred cEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCC
Q 011709 188 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267 (479)
Q Consensus 188 ~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (479)
..++.||++ +|++..|+|+.++|++||.|++||+|.+.+..+
T Consensus 444 ~~~L~GH~G-PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~------------------------------------- 485 (707)
T KOG0263|consen 444 SRTLYGHSG-PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC------------------------------------- 485 (707)
T ss_pred eEEeecCCC-ceeeeeecccccceeeccCCcceeeeeccccee-------------------------------------
Confidence 456999997 699999999999999999999999999975432
Q ss_pred CCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCc
Q 011709 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 347 (479)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~ 347 (479)
+-.++||..+|.++.|+|.| .+|||++.|++-++|...... ..+.+.+|.+.|.|++|+| +.+|++|||.|.+
T Consensus 486 ---~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~--PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~t 558 (707)
T KOG0263|consen 486 ---LVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK--PLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRT 558 (707)
T ss_pred ---EEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC--chhhhcccccccceEEECC-cccccccCCCCce
Confidence 36778999999999999999 899999999999999998866 6888899999999999999 9999999999999
Q ss_pred EEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeC
Q 011709 348 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 427 (479)
Q Consensus 348 I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 427 (479)
||+||+.+ +..+..|.||.++|++++|+|+|++ ||+|+.||.|+|||+..+ .++....
T Consensus 559 VRlWDv~~------G~~VRiF~GH~~~V~al~~Sp~Gr~-LaSg~ed~~I~iWDl~~~---------------~~v~~l~ 616 (707)
T KOG0263|consen 559 VRLWDVST------GNSVRIFTGHKGPVTALAFSPCGRY-LASGDEDGLIKIWDLANG---------------SLVKQLK 616 (707)
T ss_pred EEEEEcCC------CcEEEEecCCCCceEEEEEcCCCce-EeecccCCcEEEEEcCCC---------------cchhhhh
Confidence 99999999 8899999999999999999999996 789999999999999984 3445566
Q ss_pred CCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecccccc
Q 011709 428 GHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEALKS 469 (479)
Q Consensus 428 gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~~~ 469 (479)
||++ +.++.|+.||..|+++|. |.+|++|+.......
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~-----DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGA-----DNSVRLWDLTKVIEL 654 (707)
T ss_pred cccCceeEEEEecCCCEEEecCC-----CCeEEEEEchhhccc
Confidence 7777 899999999999999999 999999987655443
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-37 Score=259.90 Aligned_cols=258 Identities=21% Similarity=0.339 Sum_probs=219.9
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.....+|++.|..++..+.+.++|.+++.|.++.+|++..... ....+...+.||.. .|..+..+++|++.+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~-------~~G~~~r~~~GHsH-~v~dv~~s~dg~~al 79 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI-------KYGVPVRRLTGHSH-FVSDVVLSSDGNFAL 79 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc-------ccCceeeeeeccce-EecceEEccCCceEE
Confidence 4456799999999999998899999999999999999987622 23467889999997 699999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+++.|+++++||+.+++. .+.+.+|...|.+++|++++ .
T Consensus 80 S~swD~~lrlWDl~~g~~----------------------------------------t~~f~GH~~dVlsva~s~dn-~ 118 (315)
T KOG0279|consen 80 SASWDGTLRLWDLATGES----------------------------------------TRRFVGHTKDVLSVAFSTDN-R 118 (315)
T ss_pred eccccceEEEEEecCCcE----------------------------------------EEEEEecCCceEEEEecCCC-c
Confidence 999999999999976533 37788999999999999999 6
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeec-cCCCCeEEEEecCCC-CcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLD-DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~-~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 370 (479)
.+++|+.|.+|++|++.... ...... .+...|+|+.|+|.. ..+|++++.|++|++||+++ .+....+.+
T Consensus 119 qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~------~~l~~~~~g 190 (315)
T KOG0279|consen 119 QIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN------CQLRTTFIG 190 (315)
T ss_pred eeecCCCcceeeeeeecccE--EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC------cchhhcccc
Confidence 79999999999999998765 233322 337899999999932 78999999999999999999 678888999
Q ss_pred CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCC
Q 011709 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~ 450 (479)
|.+.++.++++|||. ++++|+.||.+.+||++.. +-++...+...|.+++|+|+.-.|+.+-.
T Consensus 191 h~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~---------------k~lysl~a~~~v~sl~fspnrywL~~at~- 253 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEG---------------KNLYSLEAFDIVNSLCFSPNRYWLCAATA- 253 (315)
T ss_pred ccccEEEEEECCCCC-EEecCCCCceEEEEEccCC---------------ceeEeccCCCeEeeEEecCCceeEeeccC-
Confidence 999999999999999 7899999999999999985 33556666667999999999877776655
Q ss_pred ccccceeEEEEeecccccc
Q 011709 451 LSYANKKIKIYCHLEALKS 469 (479)
Q Consensus 451 ~~~~d~~i~i~~~~~~~~~ 469 (479)
.+|+||+.......
T Consensus 254 -----~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 254 -----TSIKIWDLESKAVV 267 (315)
T ss_pred -----CceEEEeccchhhh
Confidence 47999987665433
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6e-37 Score=258.71 Aligned_cols=285 Identities=18% Similarity=0.281 Sum_probs=233.4
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
..+.+|.+.|.++.|++ +.+.|+++|.||.+.|||..+. ...+.+.-... .|..++|+|.|+++|+
T Consensus 49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~Tt------------nK~haipl~s~-WVMtCA~sPSg~~VAc 114 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTT------------NKVHAIPLPSS-WVMTCAYSPSGNFVAC 114 (343)
T ss_pred EEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccc------------cceeEEecCce-eEEEEEECCCCCeEEe
Confidence 44569999999999999 8899999999999999999987 33344555554 5899999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCc-ccccCCCCCceee------cCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPA-TAKSAGSSGSIIK------QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
|+-|....||++.+.......... ......+-..... .....++...-+||.++...+..+.+|.+.|.++.+
T Consensus 115 GGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 115 GGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL 194 (343)
T ss_pred cCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence 999999999999854221100000 0000111111111 122356777889999999999999999999999999
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
+|...+.|++|+-|++.++||+|.+. +++.+.+|+..|++|.|.| +|.-|++|++|++.|+||+|. .+.+.
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~~~--c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRa------D~~~a 265 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRSGQ--CVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRA------DQELA 265 (343)
T ss_pred CCCCCCeEEecccccceeeeeccCcc--eeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecC------CcEEe
Confidence 99555899999999999999999998 8999999999999999999 999999999999999999998 56676
Q ss_pred eecC--CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCe
Q 011709 367 KFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESC 443 (479)
Q Consensus 367 ~~~~--h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~ 443 (479)
.+.. -..+|++++|+-.|+. |..|..|.++.+||.-++ +..-...||.. |+++..+|||..
T Consensus 266 ~ys~~~~~~gitSv~FS~SGRl-Lfagy~d~~c~vWDtlk~---------------e~vg~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 266 VYSHDSIICGITSVAFSKSGRL-LFAGYDDFTCNVWDTLKG---------------ERVGVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred eeccCcccCCceeEEEcccccE-EEeeecCCceeEeecccc---------------ceEEEeeccCCeeEEEEECCCCcE
Confidence 6653 2358999999999995 557888999999998774 55667789998 999999999999
Q ss_pred eeecCCCccccceeEEEEe
Q 011709 444 LVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 444 l~~~~~~~~~~d~~i~i~~ 462 (479)
+++|+. |..++||.
T Consensus 330 v~TgSW-----Ds~lriW~ 343 (343)
T KOG0286|consen 330 VATGSW-----DSTLRIWA 343 (343)
T ss_pred EEecch-----hHheeecC
Confidence 999999 99999994
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-37 Score=256.06 Aligned_cols=255 Identities=18% Similarity=0.299 Sum_probs=210.3
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.....+|...|..+..++ ++++.++++.|+++++||+.++ +....|.||.. .|.+++|+++.+.++
T Consensus 56 ~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g------------~~t~~f~GH~~-dVlsva~s~dn~qiv 121 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATG------------ESTRRFVGHTK-DVLSVAFSTDNRQIV 121 (315)
T ss_pred eeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCC------------cEEEEEEecCC-ceEEEEecCCCceee
Confidence 455668999999999999 9999999999999999999998 67789999997 589999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec--CCCCceEEEEEeeCC
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSS 290 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~ 290 (479)
+|+.|.+|.+|++..... .++. +++..|+++.|+|..
T Consensus 122 SGSrDkTiklwnt~g~ck-----------------------------------------~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 122 SGSRDKTIKLWNTLGVCK-----------------------------------------YTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred cCCCcceeeeeeecccEE-----------------------------------------EEEecCCCcCcEEEEEEcCCC
Confidence 999999999999864321 2222 237899999999984
Q ss_pred -CcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec
Q 011709 291 -AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 291 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
..++++++.|++|++||+++.+ +...+.+|.+.++.+++|| ||.+.++|+.||.+.+||++. ++.+..+.
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~--l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~------~k~lysl~ 231 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQ--LRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNE------GKNLYSLE 231 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcc--hhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccC------CceeEecc
Confidence 3689999999999999999988 7778889999999999999 999999999999999999998 77777766
Q ss_pred CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecC
Q 011709 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNN 448 (479)
Q Consensus 370 ~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~ 448 (479)
|...|.+++|+|+.- .| .+..+-.|+|||+.. +..+.....+..++ ......+ ..+++|++||+.|+++-
T Consensus 232 -a~~~v~sl~fspnry-wL-~~at~~sIkIwdl~~-~~~v~~l~~d~~g~-----s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 232 -AFDIVNSLCFSPNRY-WL-CAATATSIKIWDLES-KAVVEELKLDGIGP-----SSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred -CCCeEeeEEecCCce-eE-eeccCCceEEEeccc-hhhhhhcccccccc-----ccccCCcEEEEEEEcCCCcEEEeee
Confidence 788999999999865 35 444566799999998 44443322222111 1111122 57899999999999999
Q ss_pred CCccccceeEEEEeecc
Q 011709 449 HGLSYANKKIKIYCHLE 465 (479)
Q Consensus 449 ~~~~~~d~~i~i~~~~~ 465 (479)
. |+.|++|.+..
T Consensus 303 t-----d~~irv~qv~~ 314 (315)
T KOG0279|consen 303 T-----DNVIRVWQVAK 314 (315)
T ss_pred c-----CCcEEEEEeec
Confidence 8 99999997653
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.4e-37 Score=293.85 Aligned_cols=250 Identities=22% Similarity=0.433 Sum_probs=214.1
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.....+|.|+|..++|+| +.++|+++|.|++||+|.+.+. .....+.||.. +|..+.|+|.|-++|
T Consensus 444 ~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~------------s~~V~y~GH~~-PVwdV~F~P~GyYFa 509 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTW------------SCLVIYKGHLA-PVWDVQFAPRGYYFA 509 (707)
T ss_pred eEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccc------------eeEEEecCCCc-ceeeEEecCCceEEE
Confidence 455899999999999999 7789999999999999999988 67778899997 699999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
|||.|++.++|.... ..+.+.+.+|.+.|.|+.|||+. .
T Consensus 510 tas~D~tArLWs~d~----------------------------------------~~PlRifaghlsDV~cv~FHPNs-~ 548 (707)
T KOG0263|consen 510 TASHDQTARLWSTDH----------------------------------------NKPLRIFAGHLSDVDCVSFHPNS-N 548 (707)
T ss_pred ecCCCceeeeeeccc----------------------------------------CCchhhhcccccccceEEECCcc-c
Confidence 999999999998853 23457889999999999999998 8
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
++++||.|.+||+||+.++. .++.+.+|.++|.+++|+| +|.+|++|+.||.|.+||+.+ +.++..+.+|+
T Consensus 549 Y~aTGSsD~tVRlWDv~~G~--~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~------~~~v~~l~~Ht 619 (707)
T KOG0263|consen 549 YVATGSSDRTVRLWDVSTGN--SVRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLAN------GSLVKQLKGHT 619 (707)
T ss_pred ccccCCCCceEEEEEcCCCc--EEEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCC------Ccchhhhhccc
Confidence 99999999999999999999 7999999999999999999 999999999999999999999 89999999999
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCcccc---------CCCCCCCCCCeeEEEeCCC-CCceeEEEecCCC
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE---------QGPRTTNYPAGLFFQHAGH-SPSSSIKFVLRES 442 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~---------~~~~~~~~~~~l~~~~~gh-~~~~~~~~sp~~~ 442 (479)
+.|.++.|+.+|. +||+||.|.+|++||+........ ....+.+....++.+.... +++..+.|....-
T Consensus 620 ~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl 698 (707)
T KOG0263|consen 620 GTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL 698 (707)
T ss_pred CceeEEEEecCCC-EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccce
Confidence 9999999999999 789999999999999987433300 0000111223345544444 3488899988775
Q ss_pred eeeec
Q 011709 443 CLVDN 447 (479)
Q Consensus 443 ~l~~~ 447 (479)
+|+.|
T Consensus 699 ~L~~g 703 (707)
T KOG0263|consen 699 LLAVG 703 (707)
T ss_pred eEEec
Confidence 55554
No 12
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-37 Score=257.01 Aligned_cols=256 Identities=22% Similarity=0.412 Sum_probs=220.5
Q ss_pred ceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC-C
Q 011709 130 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-E 208 (479)
Q Consensus 130 ~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~-~ 208 (479)
.+...+.+.-.+.+..++|++...+.+++++.||+++|||.... ..++..++.|.. .|+++.|++. +
T Consensus 50 gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-----------s~Pi~~~kEH~~-EV~Svdwn~~~r 117 (311)
T KOG0277|consen 50 GIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-----------SKPIHKFKEHKR-EVYSVDWNTVRR 117 (311)
T ss_pred CeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC-----------CcchhHHHhhhh-heEEeccccccc
Confidence 44566667778899999999999999999999999999995543 368889999997 5999999986 4
Q ss_pred CcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee
Q 011709 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 209 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (479)
+.++++|.|++|++|+.+.+ ..+.++.+|...|...+|+|
T Consensus 118 ~~~ltsSWD~TiKLW~~~r~----------------------------------------~Sv~Tf~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 118 RIFLTSSWDGTIKLWDPNRP----------------------------------------NSVQTFNGHNSCIYQAAFSP 157 (311)
T ss_pred eeEEeeccCCceEeecCCCC----------------------------------------cceEeecCCccEEEEEecCC
Confidence 57888899999999998643 23477899999999999999
Q ss_pred CCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee
Q 011709 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
..+++|+++|.||++++||+|.... ...+..|...|.|+.|+..+.+.++||+.|+.|++||+|+. ..|+.++
T Consensus 158 ~~~nlfas~Sgd~~l~lwdvr~~gk--~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~-----r~pl~eL 230 (311)
T KOG0277|consen 158 HIPNLFASASGDGTLRLWDVRSPGK--FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL-----RTPLFEL 230 (311)
T ss_pred CCCCeEEEccCCceEEEEEecCCCc--eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc-----cccceee
Confidence 9999999999999999999998763 33367899999999999999999999999999999999997 3789999
Q ss_pred cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEec-CCCeeee
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVL-RESCLVD 446 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp-~~~~l~~ 446 (479)
.+|.-+|..++|+|....+|||++.|-++||||.......+. ....|+. +..+.||+ +...+++
T Consensus 231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e--------------~~~~HtEFv~g~Dws~~~~~~vAs 296 (311)
T KOG0277|consen 231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE--------------TVDHHTEFVCGLDWSLFDPGQVAS 296 (311)
T ss_pred cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh--------------hhhccceEEeccccccccCceeee
Confidence 999999999999999988999999999999999986432222 2334565 78899997 5788999
Q ss_pred cCCCccccceeEEEEee
Q 011709 447 NNHGLSYANKKIKIYCH 463 (479)
Q Consensus 447 ~~~~~~~~d~~i~i~~~ 463 (479)
++. |..+.||+.
T Consensus 297 ~gW-----De~l~Vw~p 308 (311)
T KOG0277|consen 297 TGW-----DELLYVWNP 308 (311)
T ss_pred ccc-----ccceeeecc
Confidence 999 999999973
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=274.15 Aligned_cols=243 Identities=22% Similarity=0.387 Sum_probs=213.2
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
..|..+|.++.|++ ++.++++|..+|.|++|+..-. .+..+.+|+...|.+++|+|+...+++|+.
T Consensus 135 QaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmn-------------nVk~~~ahh~eaIRdlafSpnDskF~t~Sd 200 (464)
T KOG0284|consen 135 QAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMN-------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSD 200 (464)
T ss_pred hhhcccceeEEEcc-CCCEEEEcCCCceEEecccchh-------------hhHHhhHhhhhhhheeccCCCCceeEEecC
Confidence 47999999999999 8999999999999999998654 334566666557999999999999999999
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
||+|+|||...... -..+.+|.-.|.+++|+|.. .++++
T Consensus 201 Dg~ikiWdf~~~ke----------------------------------------e~vL~GHgwdVksvdWHP~k-gLias 239 (464)
T KOG0284|consen 201 DGTIKIWDFRMPKE----------------------------------------ERVLRGHGWDVKSVDWHPTK-GLIAS 239 (464)
T ss_pred CCeEEEEeccCCch----------------------------------------hheeccCCCCcceeccCCcc-ceeEE
Confidence 99999999864322 25678999999999999988 68999
Q ss_pred EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEE
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 376 (479)
++.|..|++||.++++ ++.++.+|...|..+.|+| ++++|+|+|.|..++++|+|+ .+.+..+++|...|+
T Consensus 240 gskDnlVKlWDprSg~--cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~------mkEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGS--CLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRT------MKELFTYRGHKKDVT 310 (464)
T ss_pred ccCCceeEeecCCCcc--hhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhH------hHHHHHhhcchhhhe
Confidence 9999999999999999 7888899999999999999 889999999999999999997 578999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccc
Q 011709 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYAN 455 (479)
Q Consensus 377 ~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d 455 (479)
++.|+|-...||++|+.||.|..|.+... . ++.-...+|.. |.+++|+|-|..|++|++ |
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~-------------p~~~i~~AHd~~iwsl~~hPlGhil~tgsn-----d 371 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLE-E-------------PLGEIPPAHDGEIWSLAYHPLGHILATGSN-----D 371 (464)
T ss_pred eeccccccccceeeccCCCceEEEecccc-c-------------cccCCCcccccceeeeeccccceeEeecCC-----C
Confidence 99999999999999999999999998731 1 11112334544 999999999999999999 9
Q ss_pred eeEEEEe
Q 011709 456 KKIKIYC 462 (479)
Q Consensus 456 ~~i~i~~ 462 (479)
.+++.|.
T Consensus 372 ~t~rfw~ 378 (464)
T KOG0284|consen 372 RTVRFWT 378 (464)
T ss_pred cceeeec
Confidence 9999994
No 14
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=265.80 Aligned_cols=274 Identities=21% Similarity=0.345 Sum_probs=212.0
Q ss_pred eCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCC
Q 011709 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA 172 (479)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~ 172 (479)
.+|+-+.++++|++..-.| .....+|...|.|++|+| ++..||+|+.||+|++||..+
T Consensus 131 ~tGsGD~TvR~WD~~TeTp---------------------~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 131 VTGSGDTTVRLWDLDTETP---------------------LFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred EecCCCceEEeeccCCCCc---------------------ceeecCCccEEEEEEECC-CcchhhccccCCeEEEecCCC
Confidence 4667788888888765333 455668999999999999 888999999999999999777
Q ss_pred CCCccc------------------------------------cCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 173 QPNRHA------------------------------------VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 173 ~~~~~~------------------------------------~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
++..-. +......+++..+.||+. .|+|+.|--+| +|++||.
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~ 266 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQ 266 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCC
Confidence 653211 000111245677899997 59999997554 8999999
Q ss_pred CCcEEEEecCCCccccccCCccc------------cc---CCCCCce-----------------------eecCCCCCCC
Q 011709 217 DKSVVLWSIQDHITSSATDPATA------------KS---AGSSGSI-----------------------IKQSPKPGDG 258 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~------------~~---~~~~~~~-----------------------~~~~~~~~~~ 258 (479)
|++|++|+...+........... .. ....... -.......+.
T Consensus 267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~ 346 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF 346 (480)
T ss_pred CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence 99999999988643221111000 00 0000000 0111223455
Q ss_pred CCCCCCCCCC-CCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCc
Q 011709 259 NDKAADGPSV-GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN 337 (479)
Q Consensus 259 ~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 337 (479)
.+.+|+.... +++..+.+|...|+.+.|+|++ .++++++.|..|++||.++++ .+..+.+|-..|+.++|+. |.+
T Consensus 347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk--~lasfRGHv~~VYqvawsa-DsR 422 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGK--FLASFRGHVAAVYQVAWSA-DSR 422 (480)
T ss_pred eEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcc--hhhhhhhccceeEEEEecc-Ccc
Confidence 5666665443 4778889999999999999999 899999999999999999999 7888999999999999999 999
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEe
Q 011709 338 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 338 ~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd 401 (479)
+|++||.|.++++||+++ .+....+.+|.+.|.++.|+|||.. +++|+.|..+++|.
T Consensus 423 LlVS~SkDsTLKvw~V~t------kKl~~DLpGh~DEVf~vDwspDG~r-V~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWDVRT------KKLKQDLPGHADEVFAVDWSPDGQR-VASGGKDKVLRLWR 479 (480)
T ss_pred EEEEcCCCceEEEEEeee------eeecccCCCCCceEEEEEecCCCce-eecCCCceEEEeec
Confidence 999999999999999999 7788899999999999999999995 78999999999994
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=243.47 Aligned_cols=257 Identities=20% Similarity=0.368 Sum_probs=216.0
Q ss_pred eEEEecCC-CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 133 KHKTIIHP-GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 133 ~~~~~~h~-~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
..+++.|+ +.|+++...| ++..||+++.. .||+||+.+. ...++..+.+|+.+ |+++.|..+|+.+
T Consensus 32 C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~q-hvRlyD~~S~----------np~Pv~t~e~h~kN-VtaVgF~~dgrWM 98 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITP-DKKDLAAAGNQ-HVRLYDLNSN----------NPNPVATFEGHTKN-VTAVGFQCDGRWM 98 (311)
T ss_pred EEEEEecCccceeeEEEcC-CcchhhhccCC-eeEEEEccCC----------CCCceeEEeccCCc-eEEEEEeecCeEE
Confidence 45566776 5899999999 78888888875 8999999988 44689999999986 8999999999999
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
++||.||+++|||++.... .....|..+|+++..+|..
T Consensus 99 yTgseDgt~kIWdlR~~~~-----------------------------------------qR~~~~~spVn~vvlhpnQ- 136 (311)
T KOG0315|consen 99 YTGSEDGTVKIWDLRSLSC-----------------------------------------QRNYQHNSPVNTVVLHPNQ- 136 (311)
T ss_pred EecCCCceEEEEeccCccc-----------------------------------------chhccCCCCcceEEecCCc-
Confidence 9999999999999986332 2233477999999999987
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
..|++|..+|.|++||++...+.. .........|.++...| +|.+++++...|..++|++-.......-.|+.++++|
T Consensus 137 teLis~dqsg~irvWDl~~~~c~~-~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGENSCTH-ELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred ceEEeecCCCcEEEEEccCCcccc-ccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 679999999999999999886321 12223457899999999 9999999999999999999774433335788899999
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~ 450 (479)
.+-+..+.+||++.+ ||++|.|.+++||++... -.+-.+..||.. +-+++||.|+.+|++++.
T Consensus 215 ~~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~--------------~kle~~l~gh~rWvWdc~FS~dg~YlvTass- 278 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKY-LATCSSDKTVKIWNTDDF--------------FKLELVLTGHQRWVWDCAFSADGEYLVTASS- 278 (311)
T ss_pred cceEEEEEECCCCcE-EEeecCCceEEEEecCCc--------------eeeEEEeecCCceEEeeeeccCccEEEecCC-
Confidence 999999999999996 789999999999999873 133456788887 999999999999999999
Q ss_pred ccccceeEEEEeeccc
Q 011709 451 LSYANKKIKIYCHLEA 466 (479)
Q Consensus 451 ~~~~d~~i~i~~~~~~ 466 (479)
|+.+++|+....
T Consensus 279 ----d~~~rlW~~~~~ 290 (311)
T KOG0315|consen 279 ----DHTARLWDLSAG 290 (311)
T ss_pred ----CCceeecccccC
Confidence 999999976543
No 16
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=240.09 Aligned_cols=291 Identities=17% Similarity=0.267 Sum_probs=231.8
Q ss_pred ccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCce
Q 011709 64 VWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEV 143 (479)
Q Consensus 64 ~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 143 (479)
.| .+.|.|.. .+++ ++++.++.++||+..... +-..+....-+|+..|
T Consensus 17 ~W---~~awhp~~--------g~il----Ascg~Dk~vriw~~~~~~-----------------s~~ck~vld~~hkrsV 64 (312)
T KOG0645|consen 17 VW---SVAWHPGK--------GVIL----ASCGTDKAVRIWSTSSGD-----------------SWTCKTVLDDGHKRSV 64 (312)
T ss_pred EE---EEEeccCC--------ceEE----EeecCCceEEEEecCCCC-----------------cEEEEEeccccchhee
Confidence 56 88999963 1233 566789999999764211 0111122223799999
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEE
Q 011709 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW 223 (479)
Q Consensus 144 ~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vw 223 (479)
.+++|+| .+++||+||.|.++.||.-..+ ...+...+.||.. .|.|++|+++|++||+|+.|+.|-+|
T Consensus 65 RsvAwsp-~g~~La~aSFD~t~~Iw~k~~~----------efecv~~lEGHEn-EVK~Vaws~sG~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 65 RSVAWSP-HGRYLASASFDATVVIWKKEDG----------EFECVATLEGHEN-EVKCVAWSASGNYLATCSRDKSVWIW 132 (312)
T ss_pred eeeeecC-CCcEEEEeeccceEEEeecCCC----------ceeEEeeeecccc-ceeEEEEcCCCCEEEEeeCCCeEEEE
Confidence 9999999 8889999999999999987765 4567889999997 59999999999999999999999999
Q ss_pred ecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeE
Q 011709 224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL 303 (479)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 303 (479)
.+... ....+...+++|+..|..+.|||.. .+|++++.|.+|
T Consensus 133 e~ded-------------------------------------dEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTI 174 (312)
T KOG0645|consen 133 EIDED-------------------------------------DEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTI 174 (312)
T ss_pred EecCC-------------------------------------CcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeE
Confidence 98632 3344558899999999999999988 689999999999
Q ss_pred EEEeCC-CCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEec
Q 011709 304 ILWDAR-VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 382 (479)
Q Consensus 304 ~iwd~~-~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 382 (479)
++|+-. .....++..+.+|...|.+++|+| .|..|++++.|++|+||-... .- -..|..+++.+.|.
T Consensus 175 k~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~------~~----~~~~sr~~Y~v~W~- 242 (312)
T KOG0645|consen 175 KVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYT------DL----SGMHSRALYDVPWD- 242 (312)
T ss_pred EEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeecc------Cc----chhcccceEeeeec-
Confidence 999887 556668899999999999999999 899999999999999998764 11 13478899999998
Q ss_pred CCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEE-EeCCCCC-ceeEEEecC-CCeeeecCCCccccceeEE
Q 011709 383 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF-QHAGHSP-SSSIKFVLR-ESCLVDNNHGLSYANKKIK 459 (479)
Q Consensus 383 ~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~-~~~gh~~-~~~~~~sp~-~~~l~~~~~~~~~~d~~i~ 459 (479)
++ +|||++.|+.|+||.-... +.. +...++. ....|.. |.+++|+|. ...|+++++ ||.|+
T Consensus 243 ~~--~IaS~ggD~~i~lf~~s~~--~d~-------p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D-----DG~v~ 306 (312)
T KOG0645|consen 243 NG--VIASGGGDDAIRLFKESDS--PDE-------PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD-----DGIVN 306 (312)
T ss_pred cc--ceEeccCCCEEEEEEecCC--CCC-------chHHHHHhhhcccccccceEEEcCCCCCceeecCC-----CceEE
Confidence 44 6899999999999987642 000 1112222 4455655 999999995 678899999 99999
Q ss_pred EEeec
Q 011709 460 IYCHL 464 (479)
Q Consensus 460 i~~~~ 464 (479)
+|...
T Consensus 307 ~W~l~ 311 (312)
T KOG0645|consen 307 FWELE 311 (312)
T ss_pred EEEec
Confidence 99753
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.7e-35 Score=248.22 Aligned_cols=252 Identities=21% Similarity=0.333 Sum_probs=217.1
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
+..+.+|+++|+.+.|+| ++.+||||+.|..|.+|++... ++....+++|++ +|..+.|.+++..|+
T Consensus 40 ~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gd-----------ceN~~~lkgHsg-AVM~l~~~~d~s~i~ 106 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGD-----------CENFWVLKGHSG-AVMELHGMRDGSHIL 106 (338)
T ss_pred hhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEecccc-----------ccceeeeccccc-eeEeeeeccCCCEEE
Confidence 566779999999999999 8899999999999999997754 244567889997 699999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+++.|++|+.||++++.. ++.+++|...|+++.-+..|..
T Consensus 107 S~gtDk~v~~wD~~tG~~----------------------------------------~rk~k~h~~~vNs~~p~rrg~~ 146 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGKR----------------------------------------IRKHKGHTSFVNSLDPSRRGPQ 146 (338)
T ss_pred EecCCceEEEEeccccee----------------------------------------eehhccccceeeecCccccCCe
Confidence 999999999999977654 3677889999999997778888
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
++.+++.||++++||+|+.. +++++ .....++++.|.. .+..+.+|+-|+.|++||+|. ...++.+.||.
T Consensus 147 lv~SgsdD~t~kl~D~R~k~--~~~t~-~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~------~d~~~~lsGh~ 216 (338)
T KOG0265|consen 147 LVCSGSDDGTLKLWDIRKKE--AIKTF-ENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRK------NDGLYTLSGHA 216 (338)
T ss_pred EEEecCCCceEEEEeecccc--hhhcc-ccceeEEEEEecc-cccceeeccccCceeeecccc------CcceEEeeccc
Confidence 99999999999999999887 55554 4567899999998 889999999999999999998 78899999999
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCee-EEEeCCCCC-----ceeEEEecCCCeeee
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL-FFQHAGHSP-----SSSIKFVLRESCLVD 446 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l-~~~~~gh~~-----~~~~~~sp~~~~l~~ 446 (479)
++|+.+..+|+|.+++ +-+.|.++++||++-. .|.+. +-+..||.. ...++|+|++..+.+
T Consensus 217 DtIt~lsls~~gs~ll-snsMd~tvrvwd~rp~------------~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~a 283 (338)
T KOG0265|consen 217 DTITGLSLSRYGSFLL-SNSMDNTVRVWDVRPF------------APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITA 283 (338)
T ss_pred CceeeEEeccCCCccc-cccccceEEEEEeccc------------CCCCceEEEeecchhhhhhhcceeeccCCCCcccc
Confidence 9999999999999754 9999999999999863 22222 334444433 468999999999999
Q ss_pred cCCCccccceeEEEEeecc
Q 011709 447 NNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 447 ~~~~~~~~d~~i~i~~~~~ 465 (479)
++. |..+.+|+...
T Consensus 284 gs~-----dr~vyvwd~~~ 297 (338)
T KOG0265|consen 284 GSA-----DRFVYVWDTTS 297 (338)
T ss_pred ccc-----cceEEEeeccc
Confidence 988 99999998665
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-35 Score=255.78 Aligned_cols=251 Identities=22% Similarity=0.398 Sum_probs=228.2
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
..+..+|..+|+.+-|+| +..++|+++.|++|++||..++ +....++||+++ |..++|+..|++|+
T Consensus 101 ~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg------------~~e~~LrGHt~s-v~di~~~a~Gk~l~ 166 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETG------------ELERSLRGHTDS-VFDISFDASGKYLA 166 (406)
T ss_pred hhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccch------------hhhhhhhccccc-eeEEEEecCccEEE
Confidence 556678999999999999 7789999999999999999999 567789999985 89999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+++.|-.+.+||..+. .+++..+.+|...|.+++|-|.| .
T Consensus 167 tcSsDl~~~LWd~~~~---------------------------------------~~c~ks~~gh~h~vS~V~f~P~g-d 206 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTF---------------------------------------FRCIKSLIGHEHGVSSVFFLPLG-D 206 (406)
T ss_pred ecCCccchhheeHHHH---------------------------------------HHHHHHhcCcccceeeEEEEecC-C
Confidence 9999999999998642 23346677899999999999999 7
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
++++++.|.+|+.||+.++. ++.++.+|...|..++.+. ||.++|+++.|-+|++|-+.+ +.+...++.|.
T Consensus 207 ~ilS~srD~tik~We~~tg~--cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t------~~~k~~lR~hE 277 (406)
T KOG0295|consen 207 HILSCSRDNTIKAWECDTGY--CVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT------KQCKAELREHE 277 (406)
T ss_pred eeeecccccceeEEecccce--eEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEecc------chhhhhhhccc
Confidence 89999999999999999999 8999999999999999999 999999999999999999998 77889999999
Q ss_pred CcEEEEEEecC--------------CCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEE
Q 011709 373 AAVLCVQWSPD--------------KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKF 437 (479)
Q Consensus 373 ~~v~~l~~~p~--------------~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~ 437 (479)
.+|-+++|.|. +..++++++.|++|++||+..+ ..+|+..||.. |.+++|
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---------------~cL~tL~ghdnwVr~~af 342 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---------------MCLFTLVGHDNWVRGVAF 342 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---------------eEEEEEecccceeeeeEE
Confidence 99999999873 2236889999999999999985 77899999999 999999
Q ss_pred ecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 438 VLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 438 sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
+|.|++|++..+ |+++++|+....
T Consensus 343 ~p~Gkyi~ScaD-----Dktlrvwdl~~~ 366 (406)
T KOG0295|consen 343 SPGGKYILSCAD-----DKTLRVWDLKNL 366 (406)
T ss_pred cCCCeEEEEEec-----CCcEEEEEeccc
Confidence 999999999999 999999986554
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.2e-35 Score=252.86 Aligned_cols=246 Identities=25% Similarity=0.427 Sum_probs=219.0
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s 215 (479)
.-+|.+.|.|+++.| ...+++||+.|++|+|||+.++ +...++.||-. .|..+++|+...||++++
T Consensus 147 i~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg------------~LkltltGhi~-~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATG------------QLKLTLTGHIE-TVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred hhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccC------------eEEEeecchhh-eeeeeeecccCceEEEec
Confidence 348999999999999 6789999999999999999999 78889999997 589999999999999999
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
.|+.|+.||++..+. ++.+.||-..|.+++.+|.- ..++
T Consensus 213 edk~VKCwDLe~nkv----------------------------------------IR~YhGHlS~V~~L~lhPTl-dvl~ 251 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKV----------------------------------------IRHYHGHLSGVYCLDLHPTL-DVLV 251 (460)
T ss_pred CCCeeEEEechhhhh----------------------------------------HHHhccccceeEEEeccccc-eeEE
Confidence 999999999975433 46788999999999999988 6899
Q ss_pred EEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcE
Q 011709 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 375 (479)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v 375 (479)
+|+.|.++++||+|+.. .+..+.+|..+|.++.+.| -...+++||.|++|++||++. ++...++..|...|
T Consensus 252 t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~a------gkt~~tlt~hkksv 322 (460)
T KOG0285|consen 252 TGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRA------GKTMITLTHHKKSV 322 (460)
T ss_pred ecCCcceEEEeeecccc--eEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeecc------CceeEeeeccccee
Confidence 99999999999999988 6889999999999999999 677899999999999999999 88899999999999
Q ss_pred EEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCcccc
Q 011709 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYA 454 (479)
Q Consensus 376 ~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~ 454 (479)
.+++.+|... +|||++.| .|+-|++..+ ..+-...||.. +.+++.+.|+ ++++|++
T Consensus 323 ral~lhP~e~-~fASas~d-nik~w~~p~g---------------~f~~nlsgh~~iintl~~nsD~-v~~~G~d----- 379 (460)
T KOG0285|consen 323 RALCLHPKEN-LFASASPD-NIKQWKLPEG---------------EFLQNLSGHNAIINTLSVNSDG-VLVSGGD----- 379 (460)
T ss_pred eEEecCCchh-hhhccCCc-cceeccCCcc---------------chhhccccccceeeeeeeccCc-eEEEcCC-----
Confidence 9999999977 69999987 4999999875 33445778888 7888888876 5667777
Q ss_pred ceeEEEEeeccccc
Q 011709 455 NKKIKIYCHLEALK 468 (479)
Q Consensus 455 d~~i~i~~~~~~~~ 468 (479)
+|.+..|+......
T Consensus 380 ng~~~fwdwksg~n 393 (460)
T KOG0285|consen 380 NGSIMFWDWKSGHN 393 (460)
T ss_pred ceEEEEEecCcCcc
Confidence 89999999877654
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-34 Score=257.82 Aligned_cols=263 Identities=19% Similarity=0.346 Sum_probs=211.8
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEecc---CCCceeeeeecCCCC
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH---QDNAEFALAMCPTEP 209 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h---~~~~v~~l~~s~~~~ 209 (479)
+.+.+.|..+|.+.+|+|....+||+|+.|.+.++|++.......... ...+-...+.++ +...|++|+|+.+|.
T Consensus 171 ~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q--~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~ 248 (524)
T KOG0273|consen 171 KAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ--LVLRHCIREGGKSVPSNKDVTSLDWNNDGT 248 (524)
T ss_pred ceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh--hhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence 456677999999999999766699999999999999998621110000 000000001111 123589999999999
Q ss_pred cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC
Q 011709 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (479)
Q Consensus 210 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (479)
.||+|+.||.+++|+..... +.++..|+++|.++.|+.+
T Consensus 249 ~LatG~~~G~~riw~~~G~l-----------------------------------------~~tl~~HkgPI~slKWnk~ 287 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDGNL-----------------------------------------ISTLGQHKGPIFSLKWNKK 287 (524)
T ss_pred eEEEeecCcEEEEEecCchh-----------------------------------------hhhhhccCCceEEEEEcCC
Confidence 99999999999999986432 2567779999999999999
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCC---------------------------------------CceeeeccCCCCeEEEE
Q 011709 290 SAQEFCSVGDDSCLILWDARVGTS---------------------------------------PVIKVEKAHDADLHCVD 330 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~---------------------------------------~~~~~~~~~~~~v~~l~ 330 (479)
| +++++++-|+++.+||..++.. ..+.++.+|.+.|+++.
T Consensus 288 G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 288 G-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred C-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 8 7899999999999999865531 12345568999999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCC--------cEEEEEeCCCCEEEEeC
Q 011709 331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS--------SVFGSSAEDGLLNIWDY 402 (479)
Q Consensus 331 ~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--------~llas~s~Dg~v~iwd~ 402 (479)
|+| .+.+|+++|+|++++||.... ....+.+.+|...|+.+.|+|.+. .++++++.|++|++||+
T Consensus 367 ~n~-tg~LLaS~SdD~TlkiWs~~~------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 367 WNP-TGSLLASCSDDGTLKIWSMGQ------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred ECC-CCceEEEecCCCeeEeeecCC------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence 999 999999999999999999887 678999999999999999999753 36889999999999999
Q ss_pred CCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 403 EKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
..+ ..++....|+. |.+++|+|+++++++|+. ||.|.+|.....
T Consensus 440 ~~g---------------v~i~~f~kH~~pVysvafS~~g~ylAsGs~-----dg~V~iws~~~~ 484 (524)
T KOG0273|consen 440 ESG---------------VPIHTLMKHQEPVYSVAFSPNGRYLASGSL-----DGCVHIWSTKTG 484 (524)
T ss_pred cCC---------------ceeEeeccCCCceEEEEecCCCcEEEecCC-----CCeeEeccccch
Confidence 884 44667777776 999999999999999999 999999976543
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=265.60 Aligned_cols=275 Identities=20% Similarity=0.343 Sum_probs=220.9
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
+.+.-+|...+++++|+| |+.++|||++||.|+|||...+ -+..++..|+. .|+++.|+..|+.|+
T Consensus 343 VlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~Sg------------fC~vTFteHts-~Vt~v~f~~~g~~ll 408 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSG------------FCFVTFTEHTS-GVTAVQFTARGNVLL 408 (893)
T ss_pred eeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCc------------eEEEEeccCCC-ceEEEEEEecCCEEE
Confidence 556679999999999999 9999999999999999999988 78899999997 599999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC-CCCceEEEEEeeCCC
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSA 291 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~ 291 (479)
+.+-||+|+.||+...... +++.. ......+++..|.|
T Consensus 409 ssSLDGtVRAwDlkRYrNf----------------------------------------RTft~P~p~QfscvavD~sG- 447 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYRNF----------------------------------------RTFTSPEPIQFSCVAVDPSG- 447 (893)
T ss_pred EeecCCeEEeeeeccccee----------------------------------------eeecCCCceeeeEEEEcCCC-
Confidence 9999999999999754332 22322 22346788888989
Q ss_pred cEEEEEecCC-eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC
Q 011709 292 QEFCSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (479)
Q Consensus 292 ~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 370 (479)
.++++|+.|. .|.+|++.+++ ++..+.+|+++|.+++|+| .+..|++||.|.+||+||+-... ..+.++.
T Consensus 448 elV~AG~~d~F~IfvWS~qTGq--llDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~-----~~vEtl~- 518 (893)
T KOG0291|consen 448 ELVCAGAQDSFEIFVWSVQTGQ--LLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSS-----GTVETLE- 518 (893)
T ss_pred CEEEeeccceEEEEEEEeecCe--eeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccC-----ceeeeEe-
Confidence 5777777776 59999999999 8899999999999999999 99999999999999999997632 2344444
Q ss_pred CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCC--CCCe-eEEE--eCCC-CCceeEEEecCCCee
Q 011709 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN--YPAG-LFFQ--HAGH-SPSSSIKFVLRESCL 444 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~--~~~~-l~~~--~~gh-~~~~~~~~sp~~~~l 444 (479)
+...+..++|+|+|.. +|++..||.|.+||+....+....+...+- +... -.++ +... ...+++++++||.++
T Consensus 519 i~sdvl~vsfrPdG~e-laVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~I 597 (893)
T KOG0291|consen 519 IRSDVLAVSFRPDGKE-LAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCI 597 (893)
T ss_pred eccceeEEEEcCCCCe-EEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEE
Confidence 6678999999999996 789999999999999885444333222221 1101 0111 1111 226899999999999
Q ss_pred eecCCCccccceeEEEEeeccc--ccceeecccee
Q 011709 445 VDNNHGLSYANKKIKIYCHLEA--LKSFQIKKNFI 477 (479)
Q Consensus 445 ~~~~~~~~~~d~~i~i~~~~~~--~~~~~~~~~~~ 477 (479)
++||. .+.|++|++.+. ++.|+++.|.+
T Consensus 598 lAgG~-----sn~iCiY~v~~~vllkkfqiS~N~s 627 (893)
T KOG0291|consen 598 LAGGE-----SNSICIYDVPEGVLLKKFQISDNRS 627 (893)
T ss_pred EecCC-----cccEEEEECchhheeeeEEeccccc
Confidence 99999 999999988876 68888877643
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.6e-35 Score=252.74 Aligned_cols=310 Identities=21% Similarity=0.394 Sum_probs=235.4
Q ss_pred cccchhhhhhhhcccccccee--eEEecCCcccCCCcceEEEEEEE----eeCCCCCceEEEEEEEecCcchhhhhcccc
Q 011709 48 KSLVPVLYDWLANHNLVWPSL--SCRWGPQLEQATYKNRQRLYLSE----QTDGSVPNTLVIANCEVVKPRVAAAEHISQ 121 (479)
Q Consensus 48 ~~~~~~~y~~~~~~~l~wpsl--~~~w~p~~~~~~~~~~~~l~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (479)
+.+-|++|+.+.+....|-.= .++ .+...+.....-.++.- --+|..+|+++||+....
T Consensus 163 ~~l~pki~~di~~idsNWr~Gr~~~~---rinc~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~------------ 227 (499)
T KOG0281|consen 163 RLLYPKIIQDIETIESNWRCGRHLLQ---RINCRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSL------------ 227 (499)
T ss_pred hhhhHHHHHHHhhhhcchhccceeee---eecCCcccCCceEEEEecchhhhcccccCceEEeccccH------------
Confidence 445677888888877777431 111 11111111111122211 146788999999965321
Q ss_pred cCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceee
Q 011709 122 FNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA 201 (479)
Q Consensus 122 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~ 201 (479)
.......+|+|.|.|+.| +.++|++|+.|.+|+|||++++ .++.++.+|.. .|..
T Consensus 228 ---------~c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tg------------e~l~tlihHce-aVLh 282 (499)
T KOG0281|consen 228 ---------ECLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTG------------EPLNTLIHHCE-AVLH 282 (499)
T ss_pred ---------HHHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCC------------chhhHHhhhcc-eeEE
Confidence 114456799999999999 5569999999999999999999 77788889997 5889
Q ss_pred eeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCce
Q 011709 202 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV 281 (479)
Q Consensus 202 l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 281 (479)
+.|+ +.++++++.|.+|.+||+.... .....+.+.||...|
T Consensus 283 lrf~--ng~mvtcSkDrsiaVWdm~sps-------------------------------------~it~rrVLvGHrAaV 323 (499)
T KOG0281|consen 283 LRFS--NGYMVTCSKDRSIAVWDMASPT-------------------------------------DITLRRVLVGHRAAV 323 (499)
T ss_pred EEEe--CCEEEEecCCceeEEEeccCch-------------------------------------HHHHHHHHhhhhhhe
Confidence 9997 4589999999999999997532 112347788999999
Q ss_pred EEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCC
Q 011709 282 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (479)
Q Consensus 282 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~ 361 (479)
+.+.|+. .++++++.|.+|++|++.+.. +++++.+|...|.|+.+ .++++++|++|.+|++||+..
T Consensus 324 NvVdfd~---kyIVsASgDRTikvW~~st~e--fvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~------ 389 (499)
T KOG0281|consen 324 NVVDFDD---KYIVSASGDRTIKVWSTSTCE--FVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIEC------ 389 (499)
T ss_pred eeecccc---ceEEEecCCceEEEEecccee--eehhhhcccccceehhc---cCeEEEecCCCceEEEEeccc------
Confidence 9999964 589999999999999999998 89999999999999998 579999999999999999999
Q ss_pred CCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCee-EEEeCCCCC-ceeEEEec
Q 011709 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL-FFQHAGHSP-SSSIKFVL 439 (479)
Q Consensus 362 ~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l-~~~~~gh~~-~~~~~~sp 439 (479)
|.++..++||+.-|.++.|+.. . +++|+.||+|+|||+...-.+... ...+ +....-|++ |..+.|
T Consensus 390 G~cLRvLeGHEeLvRciRFd~k--r-IVSGaYDGkikvWdl~aaldpra~-------~~~~Cl~~lv~hsgRVFrLQF-- 457 (499)
T KOG0281|consen 390 GACLRVLEGHEELVRCIRFDNK--R-IVSGAYDGKIKVWDLQAALDPRAP-------ASTLCLRTLVEHSGRVFRLQF-- 457 (499)
T ss_pred cHHHHHHhchHHhhhheeecCc--e-eeeccccceEEEEecccccCCccc-------ccchHHHhhhhccceeEEEee--
Confidence 8999999999999999999643 3 579999999999999985322211 1112 223334553 666666
Q ss_pred CCCeeeecCCCccccceeEEEEeecccc
Q 011709 440 RESCLVDNNHGLSYANKKIKIYCHLEAL 467 (479)
Q Consensus 440 ~~~~l~~~~~~~~~~d~~i~i~~~~~~~ 467 (479)
|...+++.+. |..|.+|+-....
T Consensus 458 D~fqIvsssH-----ddtILiWdFl~~~ 480 (499)
T KOG0281|consen 458 DEFQIISSSH-----DDTILIWDFLNGP 480 (499)
T ss_pred cceEEEeccC-----CCeEEEEEcCCCC
Confidence 5577888888 8899999765543
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.7e-35 Score=259.29 Aligned_cols=239 Identities=23% Similarity=0.452 Sum_probs=207.5
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCc
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~ 219 (479)
...|+.|+|.| +|+.|++|+..|.+.+|+...- .....+..|.. +|.++.|+++|.+++||+.+|.
T Consensus 96 kc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~f------------nFEtilQaHDs-~Vr~m~ws~~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 96 KCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSF------------NFETILQAHDS-PVRTMKWSHNGTWMISGDKGGM 161 (464)
T ss_pred ccceeeEEEcC-CCceeEeecccccEEEecCcee------------eHHHHhhhhcc-cceeEEEccCCCEEEEcCCCce
Confidence 45799999999 8899999999999999998654 44456778886 6999999999999999999999
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC-CCCceEEEEEeeCCCcEEEEEe
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVG 298 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~ 298 (479)
|++|+.+-... ..++. |...|.+++|+|.+ ..|++|+
T Consensus 162 iKyWqpnmnnV-----------------------------------------k~~~ahh~eaIRdlafSpnD-skF~t~S 199 (464)
T KOG0284|consen 162 IKYWQPNMNNV-----------------------------------------KIIQAHHAEAIRDLAFSPND-SKFLTCS 199 (464)
T ss_pred EEecccchhhh-----------------------------------------HHhhHhhhhhhheeccCCCC-ceeEEec
Confidence 99999763221 33444 45899999999977 7899999
Q ss_pred cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEE
Q 011709 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 378 (479)
+||+|+|||.+..+ ....+.+|...|.+++|+| ...+|++||.|..|++||.|+ +.++.++.+|...|..+
T Consensus 200 dDg~ikiWdf~~~k--ee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprS------g~cl~tlh~HKntVl~~ 270 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPK--EERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRS------GSCLATLHGHKNTVLAV 270 (464)
T ss_pred CCCeEEEEeccCCc--hhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCC------cchhhhhhhccceEEEE
Confidence 99999999999887 4566789999999999999 888999999999999999999 89999999999999999
Q ss_pred EEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCC-CeeeecCCCccccce
Q 011709 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRE-SCLVDNNHGLSYANK 456 (479)
Q Consensus 379 ~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~-~~l~~~~~~~~~~d~ 456 (479)
.|+|++++ |+++|.|..++++|+++. .-+|...||.. ++++.|+|-. ..|.++|. ||
T Consensus 271 ~f~~n~N~-Llt~skD~~~kv~DiR~m---------------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~-----Dg 329 (464)
T KOG0284|consen 271 KFNPNGNW-LLTGSKDQSCKVFDIRTM---------------KELFTYRGHKKDVTSLTWHPLNESLFTSGGS-----DG 329 (464)
T ss_pred EEcCCCCe-eEEccCCceEEEEehhHh---------------HHHHHhhcchhhheeeccccccccceeeccC-----CC
Confidence 99999985 679999999999999963 23667888887 9999999964 56666777 99
Q ss_pred eEEEEeec
Q 011709 457 KIKIYCHL 464 (479)
Q Consensus 457 ~i~i~~~~ 464 (479)
+|..|.+.
T Consensus 330 svvh~~v~ 337 (464)
T KOG0284|consen 330 SVVHWVVG 337 (464)
T ss_pred ceEEEecc
Confidence 99999765
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.1e-33 Score=231.15 Aligned_cols=253 Identities=20% Similarity=0.372 Sum_probs=210.7
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEE-eccCCCceeeeeecCCCCcE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~v~~l~~s~~~~~l 211 (479)
+...-+|++.|..++|+|..+.+||||+.|..|+||+...+. ...+...+ .+|+. .|.+++|+|.|++|
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~---------s~~ck~vld~~hkr-sVRsvAwsp~g~~L 76 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD---------SWTCKTVLDDGHKR-SVRSVAWSPHGRYL 76 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC---------cEEEEEeccccchh-eeeeeeecCCCcEE
Confidence 555678999999999999558899999999999999998631 11333333 36776 59999999999999
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
++||.|.++.||.-.. ..++.+.+++||...|.+++|+++|
T Consensus 77 a~aSFD~t~~Iw~k~~--------------------------------------~efecv~~lEGHEnEVK~Vaws~sG- 117 (312)
T KOG0645|consen 77 ASASFDATVVIWKKED--------------------------------------GEFECVATLEGHENEVKCVAWSASG- 117 (312)
T ss_pred EEeeccceEEEeecCC--------------------------------------CceeEEeeeeccccceeEEEEcCCC-
Confidence 9999999999997643 3344568899999999999999999
Q ss_pred cEEEEEecCCeEEEEeCCCCC-CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC
Q 011709 292 QEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 370 (479)
++||+|+.|..|-||.+.... ..+...+..|...|..+.|+| ...+|+++|.|.+|++|+-..... ..+++++.+
T Consensus 118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~ddd---W~c~~tl~g 193 (312)
T KOG0645|consen 118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDD---WECVQTLDG 193 (312)
T ss_pred CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCC---eeEEEEecC
Confidence 899999999999999988543 347788899999999999999 899999999999999998773111 678999999
Q ss_pred CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC-CCceeEEEecCCCeeeecCC
Q 011709 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-SPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh-~~~~~~~~sp~~~~l~~~~~ 449 (479)
|...|.+++|+|.|.. |++++.|++|+||-+... ...-| ..+..+.|. ...|++++.
T Consensus 194 ~~~TVW~~~F~~~G~r-l~s~sdD~tv~Iw~~~~~-------------------~~~~~sr~~Y~v~W~--~~~IaS~gg 251 (312)
T KOG0645|consen 194 HENTVWSLAFDNIGSR-LVSCSDDGTVSIWRLYTD-------------------LSGMHSRALYDVPWD--NGVIASGGG 251 (312)
T ss_pred ccceEEEEEecCCCce-EEEecCCcceEeeeeccC-------------------cchhcccceEeeeec--ccceEeccC
Confidence 9999999999999986 689999999999986642 11123 347889998 567888888
Q ss_pred CccccceeEEEEeecc
Q 011709 450 GLSYANKKIKIYCHLE 465 (479)
Q Consensus 450 ~~~~~d~~i~i~~~~~ 465 (479)
|+.|++|....
T Consensus 252 -----D~~i~lf~~s~ 262 (312)
T KOG0645|consen 252 -----DDAIRLFKESD 262 (312)
T ss_pred -----CCEEEEEEecC
Confidence 89999997664
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-32 Score=249.65 Aligned_cols=295 Identities=19% Similarity=0.253 Sum_probs=224.1
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEe---ccCCCceeeeeecCCCC
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT---GHQDNAEFALAMCPTEP 209 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~v~~l~~s~~~~ 209 (479)
......|..-|+|++|+| ++.++||.+.||.|.|||=.++ ..+..+. +|+++ |++|+|+||+.
T Consensus 183 k~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktg------------e~vg~l~~~~aHkGs-IfalsWsPDs~ 248 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTG------------EKVGELEDSDAHKGS-IFALSWSPDST 248 (603)
T ss_pred eecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCc------------cEEEEecCCCCcccc-EEEEEECCCCc
Confidence 455568999999999999 7999999999999999999888 3344444 89875 99999999999
Q ss_pred cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCC----CCCCCCCCCCCCCCCCceeecCCCCceEEEE
Q 011709 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK----PGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (479)
Q Consensus 210 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (479)
.+++++.|.++++||+.+......+..... .-.....++..... ...+.+..++.....+...+.||...|+++.
T Consensus 249 ~~~T~SaDkt~KIWdVs~~slv~t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt 327 (603)
T KOG0318|consen 249 QFLTVSADKTIKIWDVSTNSLVSTWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT 327 (603)
T ss_pred eEEEecCCceEEEEEeeccceEEEeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEE
Confidence 999999999999999998755433322111 00111112222111 2356666677777778899999999999999
Q ss_pred EeeCCCcEEEEEecCCeEEEEeCCCCCCCc---------ee---------------------------------------
Q 011709 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPV---------IK--------------------------------------- 317 (479)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------~~--------------------------------------- 317 (479)
.++++ .+|++|+.||.|.-||..++..-. +.
T Consensus 328 v~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~ 406 (603)
T KOG0318|consen 328 VSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS 406 (603)
T ss_pred EcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC
Confidence 99999 789999999999999987654200 00
Q ss_pred -----------------------eecc--------CCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee
Q 011709 318 -----------------------VEKA--------HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 318 -----------------------~~~~--------~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
.+.. -.....+++++| ++..++.|+.||.|+||.+.... .....
T Consensus 407 QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~----l~ee~ 481 (603)
T KOG0318|consen 407 QPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDE----LKEEA 481 (603)
T ss_pred CceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCc----cccee
Confidence 0000 012345789999 99999999999999999998632 23444
Q ss_pred eecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeee
Q 011709 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLV 445 (479)
Q Consensus 367 ~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~ 445 (479)
.+..|.++|++++++|++.+ ||++...+.+.+||+... .. ......| |+. |.+++|+|+..++|
T Consensus 482 ~~~~h~a~iT~vaySpd~~y-la~~Da~rkvv~yd~~s~-~~---------~~~~w~F----HtakI~~~aWsP~n~~vA 546 (603)
T KOG0318|consen 482 KLLEHRAAITDVAYSPDGAY-LAAGDASRKVVLYDVASR-EV---------KTNRWAF----HTAKINCVAWSPNNKLVA 546 (603)
T ss_pred eeecccCCceEEEECCCCcE-EEEeccCCcEEEEEcccC-ce---------ecceeee----eeeeEEEEEeCCCceEEE
Confidence 56779999999999999995 789999999999999873 11 1112333 666 99999999999999
Q ss_pred ecCCCccccceeEEEEeeccccc
Q 011709 446 DNNHGLSYANKKIKIYCHLEALK 468 (479)
Q Consensus 446 ~~~~~~~~~d~~i~i~~~~~~~~ 468 (479)
+|+- |.+|.||.+..=.+
T Consensus 547 TGSl-----Dt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 547 TGSL-----DTNVIIYSVKKPAK 564 (603)
T ss_pred eccc-----cceEEEEEccChhh
Confidence 9999 99999997654443
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-33 Score=241.89 Aligned_cols=245 Identities=21% Similarity=0.353 Sum_probs=215.9
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
.+.+|.+.|..|+|+. .+.+||+++.|-.+++||.++. .++...+.+|.. .|.+++|-|.|.+++|+
T Consensus 145 ~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~-----------~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~ 211 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTF-----------FRCIKSLIGHEH-GVSSVFFLPLGDHILSC 211 (406)
T ss_pred hhhccccceeEEEEec-CccEEEecCCccchhheeHHHH-----------HHHHHHhcCccc-ceeeEEEEecCCeeeec
Confidence 3468999999999999 8899999999988999999874 156667888987 58999999999999999
Q ss_pred cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEE
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (479)
+.|.+|+.|++.++.+ +.++.+|...|..+..+.|| .++
T Consensus 212 srD~tik~We~~tg~c----------------------------------------v~t~~~h~ewvr~v~v~~DG-ti~ 250 (406)
T KOG0295|consen 212 SRDNTIKAWECDTGYC----------------------------------------VKTFPGHSEWVRMVRVNQDG-TII 250 (406)
T ss_pred ccccceeEEeccccee----------------------------------------EEeccCchHhEEEEEecCCe-eEE
Confidence 9999999999976544 47788899999999999999 899
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCC--------------CCcEEEEEeCCCcEEEEecCCCCCCC
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--------------DDNLILTGSADNSVRMFDRRNLTSNG 360 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--------------~~~~l~tgs~dg~I~iwd~~~~~~~~ 360 (479)
++++.|.+|++|-+.+++ +...+..|+.+|.+++|.|. .+.++++++.|++|++||+.+
T Consensus 251 As~s~dqtl~vW~~~t~~--~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t----- 323 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQ--CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST----- 323 (406)
T ss_pred EecCCCceEEEEEeccch--hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-----
Confidence 999999999999999987 56677789999999999873 236999999999999999999
Q ss_pred CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEec
Q 011709 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVL 439 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp 439 (479)
+.++.++.+|..+|..++|+|.|+| |+|+.+|+++++||+++. + .+.....|.. ++++.|..
T Consensus 324 -g~cL~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~-~--------------cmk~~~ah~hfvt~lDfh~ 386 (406)
T KOG0295|consen 324 -GMCLFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNL-Q--------------CMKTLEAHEHFVTSLDFHK 386 (406)
T ss_pred -CeEEEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccc-e--------------eeeccCCCcceeEEEecCC
Confidence 8999999999999999999999997 569999999999999984 2 2333445665 89999999
Q ss_pred CCCeeeecCCCccccceeEEEEe
Q 011709 440 RESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 440 ~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
+..++++|+- |-++++|.
T Consensus 387 ~~p~VvTGsV-----dqt~KvwE 404 (406)
T KOG0295|consen 387 TAPYVVTGSV-----DQTVKVWE 404 (406)
T ss_pred CCceEEeccc-----cceeeeee
Confidence 9999999999 99999985
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=231.97 Aligned_cols=205 Identities=24% Similarity=0.464 Sum_probs=182.2
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC-CCCcE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYV 211 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-~~~~l 211 (479)
.....+|.+-+.|++|.+ ++ .|+|+|.|.+..+||++++ +....+.||.+. |.+|+++| +++.+
T Consensus 138 ~r~l~gHtgylScC~f~d-D~-~ilT~SGD~TCalWDie~g------------~~~~~f~GH~gD-V~slsl~p~~~ntF 202 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLD-DN-HILTGSGDMTCALWDIETG------------QQTQVFHGHTGD-VMSLSLSPSDGNTF 202 (343)
T ss_pred eeeecCccceeEEEEEcC-CC-ceEecCCCceEEEEEcccc------------eEEEEecCCccc-EEEEecCCCCCCeE
Confidence 334569999999999988 44 7889999999999999999 777889999985 89999999 89999
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
++|+.|+..++||++.+. .++.+.+|...|+++.|.|+|
T Consensus 203 vSg~cD~~aklWD~R~~~----------------------------------------c~qtF~ghesDINsv~ffP~G- 241 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQ----------------------------------------CVQTFEGHESDINSVRFFPSG- 241 (343)
T ss_pred EecccccceeeeeccCcc----------------------------------------eeEeecccccccceEEEccCC-
Confidence 999999999999997653 347899999999999999999
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
.-|++|++|++.++||+|..+...+.....-..+|++++||. .|++|++|..|.++.+||.-. ++.+..+.+|
T Consensus 242 ~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk------~e~vg~L~GH 314 (343)
T KOG0286|consen 242 DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLK------GERVGVLAGH 314 (343)
T ss_pred CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccc------cceEEEeecc
Confidence 679999999999999999987433333334557899999999 999999999999999999987 7889999999
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEe
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd 401 (479)
...|+++..+|+|. .++|||.|..++||.
T Consensus 315 eNRvScl~~s~DG~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 315 ENRVSCLGVSPDGM-AVATGSWDSTLRIWA 343 (343)
T ss_pred CCeeEEEEECCCCc-EEEecchhHheeecC
Confidence 99999999999998 589999999999994
No 28
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.2e-32 Score=238.92 Aligned_cols=281 Identities=19% Similarity=0.369 Sum_probs=222.0
Q ss_pred eEEEecCCCceeEEEecCCC--CcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCc
Q 011709 133 KHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~--~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~ 210 (479)
+.+..+|.++|.+++|...+ ...|++++.|.++++|.++.+.... .......||.. .|-+++..++|..
T Consensus 137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~--------~~~~~~~GHk~-~V~sVsv~~sgtr 207 (423)
T KOG0313|consen 137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV--------KALKVCRGHKR-SVDSVSVDSSGTR 207 (423)
T ss_pred EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh--------hHHhHhccccc-ceeEEEecCCCCe
Confidence 67778999999988876533 3369999999999999998874332 23334459997 5899999999999
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
+++|+.|.+|.+|+............. ..+.......-......|+..+.||+.+|.++.|++.
T Consensus 208 ~~SgS~D~~lkiWs~~~~~~~~~E~~s---------------~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~- 271 (423)
T KOG0313|consen 208 FCSGSWDTMLKIWSVETDEEDELESSS---------------NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA- 271 (423)
T ss_pred EEeecccceeeecccCCCccccccccc---------------hhhhhhhhhhhcccccCceEEecccccceeeEEEcCC-
Confidence 999999999999994332111000000 0011111122233556778899999999999999984
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 370 (479)
..+++++.|.+|+.||+.++. ....+ ..+..+++++++| ...+|++|+.|..|++||.|+.+. .-..+++.+
T Consensus 272 -~v~yS~SwDHTIk~WDletg~--~~~~~-~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~g---s~v~~s~~g 343 (423)
T KOG0313|consen 272 -TVIYSVSWDHTIKVWDLETGG--LKSTL-TTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDG---SVVSQSLIG 343 (423)
T ss_pred -CceEeecccceEEEEEeeccc--ceeee-ecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCC---ceeEEeeec
Confidence 579999999999999999998 45554 4567899999999 999999999999999999998652 235678899
Q ss_pred CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCC
Q 011709 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~ 449 (479)
|...|.++.|+|...++|++++.|+++++||++.. ..-+|...||.. +.++.|+. +..+++||.
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~--------------k~plydI~~h~DKvl~vdW~~-~~~IvSGGa 408 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST--------------KAPLYDIAGHNDKVLSVDWNE-GGLIVSGGA 408 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccC--------------CCcceeeccCCceEEEEeccC-CceEEeccC
Confidence 99999999999999999999999999999999984 234778888988 89999975 568899999
Q ss_pred CccccceeEEEEeeccc
Q 011709 450 GLSYANKKIKIYCHLEA 466 (479)
Q Consensus 450 ~~~~~d~~i~i~~~~~~ 466 (479)
|++|+++.....
T Consensus 409 -----D~~l~i~~~~~~ 420 (423)
T KOG0313|consen 409 -----DNKLRIFKGSPI 420 (423)
T ss_pred -----cceEEEeccccc
Confidence 999999965544
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=238.72 Aligned_cols=284 Identities=17% Similarity=0.234 Sum_probs=227.7
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
......|++.|.+++.+| +.+++|||+.|-...||++.++ .....+.+|.++ |+++.|+.+|.+||
T Consensus 57 ~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~g------------e~~~eltgHKDS-Vt~~~FshdgtlLA 122 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTG------------EFAGELTGHKDS-VTCCSFSHDGTLLA 122 (399)
T ss_pred eeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCC------------cceeEecCCCCc-eEEEEEccCceEEE
Confidence 556678999999999999 8899999999999999999998 566789999985 89999999999999
Q ss_pred EecCCCcEEEEecCCCccccccC--Cccc--ccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee
Q 011709 213 SGGKDKSVVLWSIQDHITSSATD--PATA--KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (479)
+|+.+|.|+||+..++....... .... ....... .....+..++.+..|..+.....+.+.||..++++=.|.|
T Consensus 123 TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p 200 (399)
T KOG0296|consen 123 TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP 200 (399)
T ss_pred ecCCCccEEEEEcccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC
Confidence 99999999999998875543332 1111 1111111 1223345678888888888888899999999999999999
Q ss_pred CCCcEEEEEecCCeEEEEeCCCCCCCceeeec------------------------------------------------
Q 011709 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEK------------------------------------------------ 320 (479)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------------------------------------ 320 (479)
+| ..++++..||+|++||..++.. +..+.
T Consensus 201 dG-Kr~~tgy~dgti~~Wn~ktg~p--~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~ 277 (399)
T KOG0296|consen 201 DG-KRILTGYDDGTIIVWNPKTGQP--LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPE 277 (399)
T ss_pred CC-ceEEEEecCceEEEEecCCCce--eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcc
Confidence 99 6799999999999999998762 11111
Q ss_pred ---cCCCCeEEEEecCC--CCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCC
Q 011709 321 ---AHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 395 (479)
Q Consensus 321 ---~~~~~v~~l~~sp~--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg 395 (479)
.+...+.|+.+.|. .-.+.|+|+.||+|.|||+.. ..++..-.|..+|+.+.|-+ ..+ |++++.||
T Consensus 278 l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~-------~~~R~~c~he~~V~~l~w~~-t~~-l~t~c~~g 348 (399)
T KOG0296|consen 278 LKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA-------STLRHICEHEDGVTKLKWLN-TDY-LLTACANG 348 (399)
T ss_pred ccccchhhhhhhhhcccccccchhhcccccceEEEEeccc-------chhheeccCCCceEEEEEcC-cch-heeeccCc
Confidence 12223344444442 345789999999999999997 33444455899999999999 555 45888999
Q ss_pred CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 396 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 396 ~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.|+.||.+++ +++|...||.. |.+++.+|+.+.+++++. |+..++|.+.
T Consensus 349 ~v~~wDaRtG---------------~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~-----D~~a~VF~v~ 398 (399)
T KOG0296|consen 349 KVRQWDARTG---------------QLKFTYTGHQMGILDFALSPQKRLVVTVSD-----DNTALVFEVP 398 (399)
T ss_pred eEEeeecccc---------------ceEEEEecCchheeEEEEcCCCcEEEEecC-----CCeEEEEecC
Confidence 9999999996 88999999998 999999999999999999 9999999764
No 30
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-32 Score=222.71 Aligned_cols=246 Identities=21% Similarity=0.304 Sum_probs=215.9
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
..+-.|.++|+.++|+- ++++.+|++.|.+|++|+...+ .++.++.+|.. .|..++.+.|+..+++
T Consensus 11 ~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg------------~liktYsghG~-EVlD~~~s~Dnskf~s 76 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRG------------ALIKTYSGHGH-EVLDAALSSDNSKFAS 76 (307)
T ss_pred eeecccccceEEEEEcc-CCCEEEEcCCCceEEeeccccc------------ceeeeecCCCc-eeeecccccccccccc
Confidence 33457899999999999 9999999999999999999988 78889999987 5899999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
|+.|+.|.+||++++.. .+.+.+|.+.|+.++|+.+. ..
T Consensus 77 ~GgDk~v~vwDV~TGkv----------------------------------------~Rr~rgH~aqVNtV~fNees-SV 115 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKV----------------------------------------DRRFRGHLAQVNTVRFNEES-SV 115 (307)
T ss_pred CCCCceEEEEEcccCee----------------------------------------eeecccccceeeEEEecCcc-eE
Confidence 99999999999987644 37788999999999999887 79
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
+++|+.|.++++||.|+.....++.+......|.++..+ +..|++|+.||++|.||+|. +.....+-+ .
T Consensus 116 v~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~------G~l~sDy~g--~ 184 (307)
T KOG0316|consen 116 VASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRK------GTLSSDYFG--H 184 (307)
T ss_pred EEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeec------ceeehhhcC--C
Confidence 999999999999999998876788888888999999985 48899999999999999998 666655554 4
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC---ceeEEEecCCCeeeecCCC
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP---SSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~---~~~~~~sp~~~~l~~~~~~ 450 (479)
+|+++.|+++++..| .++.|+++++-|-.++ +++-+..||.. ..+.+++.....+++++.
T Consensus 185 pit~vs~s~d~nc~L-a~~l~stlrLlDk~tG---------------klL~sYkGhkn~eykldc~l~qsdthV~sgSE- 247 (307)
T KOG0316|consen 185 PITSVSFSKDGNCSL-ASSLDSTLRLLDKETG---------------KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSE- 247 (307)
T ss_pred cceeEEecCCCCEEE-Eeeccceeeecccchh---------------HHHHHhcccccceeeeeeeecccceeEEeccC-
Confidence 899999999999765 7778999999998885 55666778877 578889988999999999
Q ss_pred ccccceeEEEEeeccc
Q 011709 451 LSYANKKIKIYCHLEA 466 (479)
Q Consensus 451 ~~~~d~~i~i~~~~~~ 466 (479)
||.|.+|+..+.
T Consensus 248 ----DG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 248 ----DGKVYFWDLVDE 259 (307)
T ss_pred ----CceEEEEEeccc
Confidence 999999986654
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.2e-32 Score=262.43 Aligned_cols=245 Identities=24% Similarity=0.420 Sum_probs=207.1
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg 218 (479)
|...|.++.|++ ++..|++++.|+.+++|+...... .....+.+|.. .|++++|+|++.++++|+.|+
T Consensus 158 ~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~----------~~~~~l~~h~~-~v~~~~fs~d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 158 ECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKS----------NLLRELSGHTR-GVSDVAFSPDGSYLLSGSDDK 225 (456)
T ss_pred ccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccc----------hhhcccccccc-ceeeeEECCCCcEEEEecCCc
Confidence 378899999999 888899999999999999966521 24455688987 599999999999999999999
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (479)
+|++||+... ...++++.+|...|++++|+|++ +++++|+
T Consensus 226 tiriwd~~~~---------------------------------------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs 265 (456)
T KOG0266|consen 226 TLRIWDLKDD---------------------------------------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGS 265 (456)
T ss_pred eEEEeeccCC---------------------------------------CeEEEEecCCCCceEEEEecCCC-CEEEEec
Confidence 9999999422 12347889999999999999999 8999999
Q ss_pred cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCC--ceeeecCCCCc--
Q 011709 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS--PINKFEGHSAA-- 374 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~--~~~~~~~h~~~-- 374 (479)
.|++|++||+++++ +...+.+|...|++++|++ ++++|++++.|+.|+|||+.+ +. ++..+.++...
T Consensus 266 ~D~tvriWd~~~~~--~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~------~~~~~~~~~~~~~~~~~ 336 (456)
T KOG0266|consen 266 DDGTVRIWDVRTGE--CVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLET------GSKLCLKLLSGAENSAP 336 (456)
T ss_pred CCCcEEEEeccCCe--EEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCC------CceeeeecccCCCCCCc
Confidence 99999999999988 8899999999999999999 999999999999999999998 55 56677776665
Q ss_pred EEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC----ceeEEEecCCCeeeecCCC
Q 011709 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP----SSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~----~~~~~~sp~~~~l~~~~~~ 450 (479)
+++++|+|++.+ +++++.|+.+++||++.+.... ...+|.. +.+...++.+.++++++.
T Consensus 337 ~~~~~fsp~~~~-ll~~~~d~~~~~w~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~i~sg~~- 399 (456)
T KOG0266|consen 337 VTSVQFSPNGKY-LLSASLDRTLKLWDLRSGKSVG---------------TYTGHSNLVRCIFSPTLSTGGKLIYSGSE- 399 (456)
T ss_pred eeEEEECCCCcE-EEEecCCCeEEEEEccCCccee---------------eecccCCcceeEecccccCCCCeEEEEeC-
Confidence 999999999997 5599999999999999852221 2222222 345555788999999999
Q ss_pred ccccceeEEEEeecc
Q 011709 451 LSYANKKIKIYCHLE 465 (479)
Q Consensus 451 ~~~~d~~i~i~~~~~ 465 (479)
|+.|++|+...
T Consensus 400 ----d~~v~~~~~~s 410 (456)
T KOG0266|consen 400 ----DGSVYVWDSSS 410 (456)
T ss_pred ----CceEEEEeCCc
Confidence 99999998765
No 32
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.4e-31 Score=224.81 Aligned_cols=280 Identities=20% Similarity=0.339 Sum_probs=229.1
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
..+++.|.|.- .+ .++|+.+..+.+|++... .++ .....+|.++|..
T Consensus 49 eI~~~~F~P~g---------s~----~aSgG~Dr~I~LWnv~gd--------------ceN------~~~lkgHsgAVM~ 95 (338)
T KOG0265|consen 49 EIYTIKFHPDG---------SC----FASGGSDRAIVLWNVYGD--------------CEN------FWVLKGHSGAVME 95 (338)
T ss_pred eEEEEEECCCC---------Ce----EeecCCcceEEEEecccc--------------ccc------eeeeccccceeEe
Confidence 56788888841 11 267889999999986421 111 2333499999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecCCCcEEEEe
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWS 224 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~dg~i~vwd 224 (479)
+.|++ +++.|++++.|.+|+.||++++ +....+++|.+ .|+++.-+.-|. .+.||+.||+++|||
T Consensus 96 l~~~~-d~s~i~S~gtDk~v~~wD~~tG------------~~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 96 LHGMR-DGSHILSCGTDKTVRGWDAETG------------KRIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred eeecc-CCCEEEEecCCceEEEEecccc------------eeeehhccccc-eeeecCccccCCeEEEecCCCceEEEEe
Confidence 99999 8889999999999999999999 77778899997 688888554455 566889999999999
Q ss_pred cCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEE
Q 011709 225 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI 304 (479)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 304 (479)
++..... +++. .+..++++.|..++ ..+.+|+-|+.|+
T Consensus 162 ~R~k~~~----------------------------------------~t~~-~kyqltAv~f~d~s-~qv~sggIdn~ik 199 (338)
T KOG0265|consen 162 IRKKEAI----------------------------------------KTFE-NKYQLTAVGFKDTS-DQVISGGIDNDIK 199 (338)
T ss_pred ecccchh----------------------------------------hccc-cceeEEEEEecccc-cceeeccccCcee
Confidence 9864332 2221 24568999999888 5689999999999
Q ss_pred EEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC----cEEEEEE
Q 011709 305 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA----AVLCVQW 380 (479)
Q Consensus 305 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~----~v~~l~~ 380 (479)
+||+|.+. ....+.+|...|+.+..+| ++.++.+-+.|.++++||+|...+. .+++..+.+|.. ....++|
T Consensus 200 vWd~r~~d--~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~--~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 200 VWDLRKND--GLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPS--QRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred eeccccCc--ceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCC--CceEEEeecchhhhhhhcceeec
Confidence 99999988 7889999999999999999 9999999999999999999976542 345777777654 4567899
Q ss_pred ecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEE
Q 011709 381 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIK 459 (479)
Q Consensus 381 ~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~ 459 (479)
+|++.. +..|+.|+.+.+||.... .+++..+||.. |..++|+|....|.+++. |+.|.
T Consensus 275 sp~~~~-i~ags~dr~vyvwd~~~r---------------~~lyklpGh~gsvn~~~Fhp~e~iils~~s-----dk~i~ 333 (338)
T KOG0265|consen 275 SPNGTK-ITAGSADRFVYVWDTTSR---------------RILYKLPGHYGSVNEVDFHPTEPIILSCSS-----DKTIY 333 (338)
T ss_pred cCCCCc-cccccccceEEEeecccc---------------cEEEEcCCcceeEEEeeecCCCcEEEEecc-----CceeE
Confidence 999996 578889999999998763 67889999998 999999999999999999 88876
Q ss_pred E
Q 011709 460 I 460 (479)
Q Consensus 460 i 460 (479)
+
T Consensus 334 l 334 (338)
T KOG0265|consen 334 L 334 (338)
T ss_pred e
Confidence 5
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7e-31 Score=247.93 Aligned_cols=355 Identities=17% Similarity=0.253 Sum_probs=262.2
Q ss_pred hhccccccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEe
Q 011709 58 LANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTI 137 (479)
Q Consensus 58 ~~~~~l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (479)
++++...-|.-+++|.|+ .+++... ..|.+.||... +. +. +.-.|+....+..
T Consensus 90 lh~f~fk~~v~~i~fSPn---------g~~fav~-----~gn~lqiw~~P--~~----------~~-~~~~pFvl~r~~~ 142 (893)
T KOG0291|consen 90 LHRFNFKRGVGAIKFSPN---------GKFFAVG-----CGNLLQIWHAP--GE----------IK-NEFNPFVLHRTYL 142 (893)
T ss_pred eEEEeecCccceEEECCC---------CcEEEEE-----ecceeEEEecC--cc----------hh-cccCcceEeeeec
Confidence 345566778888888886 3333332 46777888542 11 11 1223445556678
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
+|-..|.+|.|+. |.++|++|+.|.+++||++...+. -....+.+|.+. |.+..|..+...|++.+.|
T Consensus 143 g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~----------~~~~~l~gHkd~-VvacfF~~~~~~l~tvskd 210 (893)
T KOG0291|consen 143 GHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKN----------LFTYALNGHKDY-VVACFFGANSLDLYTVSKD 210 (893)
T ss_pred CCccceeEEEecc-CCceEEeccccceEEEEEeccccc----------cceEeccCCCcc-eEEEEeccCcceEEEEecC
Confidence 9999999999998 889999999999999999987632 235678899984 7789999999999999999
Q ss_pred CcEEEEecCCCcccccc----------------CCc-----------ccccCCCCCceee---------cCCCCCCCCCC
Q 011709 218 KSVVLWSIQDHITSSAT----------------DPA-----------TAKSAGSSGSIIK---------QSPKPGDGNDK 261 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~----------------~~~-----------~~~~~~~~~~~~~---------~~~~~~~~~~~ 261 (479)
|.+++|.....-..... ... ..........+.+ ...+...+...
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~ 290 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG 290 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence 99999988721000000 000 0000000011111 11123455666
Q ss_pred CCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEE
Q 011709 262 AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT 341 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~t 341 (479)
++..+....++.+.-...+|..++|+..|+.+.+-|+.=|.+.+|+..+.. .+...++|...+++++++| ||++|||
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs--YVlKQQgH~~~i~~l~YSp-Dgq~iaT 367 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES--YVLKQQGHSDRITSLAYSP-DGQLIAT 367 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc--eeeeccccccceeeEEECC-CCcEEEe
Confidence 777888888888887778999999999995444444556899999999887 5666779999999999999 9999999
Q ss_pred EeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccC---CCC----
Q 011709 342 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ---GPR---- 414 (479)
Q Consensus 342 gs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~---~~~---- 414 (479)
|++||.|+|||.++ +-++.+|..|+..|+.+.|+..++. +++++.||+|+.||+.....--+. ...
T Consensus 368 G~eDgKVKvWn~~S------gfC~vTFteHts~Vt~v~f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfsc 440 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQS------GFCFVTFTEHTSGVTAVQFTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSC 440 (893)
T ss_pred ccCCCcEEEEeccC------ceEEEEeccCCCceEEEEEEecCCE-EEEeecCCeEEeeeecccceeeeecCCCceeeeE
Confidence 99999999999998 8899999999999999999999995 669999999999999874221100 000
Q ss_pred ------C----------------CCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 415 ------T----------------TNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 415 ------~----------------~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
. +-...+++-+..||.+ |.+++|+|++..|++++. |++|++|++...
T Consensus 441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW-----DkTVRiW~if~s 510 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW-----DKTVRIWDIFSS 510 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc-----cceEEEEEeecc
Confidence 0 0012356677899988 899999999999999999 999999986655
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.3e-32 Score=253.48 Aligned_cols=256 Identities=25% Similarity=0.455 Sum_probs=220.0
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
..+..+..++|..++|.-...+.||.+++.+.+++|++.+. .+. .+.||++ .|.+++...+|-+|+
T Consensus 316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~------------~c~-ii~GH~e-~vlSL~~~~~g~lla 381 (775)
T KOG0319|consen 316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS------------YCQ-IIPGHTE-AVLSLDVWSSGDLLA 381 (775)
T ss_pred ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC------------ceE-EEeCchh-heeeeeecccCcEEE
Confidence 44567888999999998878899999999999999988876 222 7899997 589999666778999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
||+.|.++++|.++++.. ...++....+|+..|.+++++..+..
T Consensus 382 t~sKD~svilWr~~~~~~------------------------------------~~~~~a~~~gH~~svgava~~~~~as 425 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCS------------------------------------KSLCVAQANGHTNSVGAVAGSKLGAS 425 (775)
T ss_pred EecCCceEEEEEecCCcc------------------------------------hhhhhhhhcccccccceeeecccCcc
Confidence 999999999999954322 11233567789999999999998889
Q ss_pred EEEEEecCCeEEEEeCCCCC---CCcee----eeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCce
Q 011709 293 EFCSVGDDSCLILWDARVGT---SPVIK----VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 365 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~---~~~~~----~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~ 365 (479)
+|+++|.|+++++|++...+ .+... +...|...|+|++++| +..+|||||.|++.+||++.. ...+
T Consensus 426 ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~------~~l~ 498 (775)
T KOG0319|consen 426 FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ------LRLL 498 (775)
T ss_pred EEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccC------ceEE
Confidence 99999999999999998732 11222 3458999999999999 999999999999999999997 7899
Q ss_pred eeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCee
Q 011709 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCL 444 (479)
Q Consensus 366 ~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l 444 (479)
.++.+|...|.++.|+|..+ ++||+|.|++|+||.+++. ..+-+..||+. |..+.|-.++..|
T Consensus 499 ~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~f---------------SClkT~eGH~~aVlra~F~~~~~ql 562 (775)
T KOG0319|consen 499 GVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTF---------------SCLKTFEGHTSAVLRASFIRNGKQL 562 (775)
T ss_pred EEeeCCccceEEEEeccccc-eeEeccCCceEEEEEeccc---------------eeeeeecCccceeEeeeeeeCCcEE
Confidence 99999999999999999988 7899999999999999985 45667899998 9999999999999
Q ss_pred eecCCCccccceeEEEEeeccc
Q 011709 445 VDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 445 ~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
++++. ||-|++|++...
T Consensus 563 iS~~a-----dGliKlWnikt~ 579 (775)
T KOG0319|consen 563 ISAGA-----DGLIKLWNIKTN 579 (775)
T ss_pred EeccC-----CCcEEEEeccch
Confidence 99999 999999976543
No 35
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8e-33 Score=240.26 Aligned_cols=283 Identities=18% Similarity=0.287 Sum_probs=223.8
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
.++-+|.+.|.|++-+|..-..+|+|+.||.|+|||+... .+...+..|.+ .|.+|++.. ..+++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR------------~~~~~f~AH~G-~V~Gi~v~~--~~~~t 124 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR------------ECIRTFKAHEG-LVRGICVTQ--TSFFT 124 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhh------------hhhheeecccC-ceeeEEecc--cceEE
Confidence 3457999999999999966688999999999999999987 67788999997 699999987 67899
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
++.|.+|+.|.++.......... ....+.+-..-..........+.+||.....|+..+.--...|.++.|+|-...+
T Consensus 125 vgdDKtvK~wk~~~~p~~tilg~--s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDGPPLHTILGK--SVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSI 202 (433)
T ss_pred ecCCcceeeeeccCCcceeeecc--ccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchh
Confidence 99999999999875311000000 0000000000011112334568899999999999998888899999999998889
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
|++|+.|+.|.+||+|+.. .++.. .....-+.|+|+| .+.-|++|+.|..++.||+|.+. .++..+.+|.+
T Consensus 203 Las~~sDrsIvLyD~R~~~--Pl~KV-i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~-----~p~~v~~dhvs 273 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQAS--PLKKV-ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS-----RPLNVHKDHVS 273 (433)
T ss_pred eeeeccCCceEEEecccCC--cccee-eeeccccceecCc-cccceeeccccccceehhhhhhc-----ccchhhcccce
Confidence 9999999999999999988 33322 2344568899999 99999999999999999999974 79999999999
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC-CCceeEEEecCCCeeeecCCCcc
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-SPSSSIKFVLRESCLVDNNHGLS 452 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh-~~~~~~~~sp~~~~l~~~~~~~~ 452 (479)
+|.++.|+|.|+- |++||.|.+|+||.++.+.. .-++ |.-. +.|.++.||.|.+++++|++
T Consensus 274 AV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~S-------------RdiY-htkRMq~V~~Vk~S~Dskyi~SGSd--- 335 (433)
T KOG0268|consen 274 AVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHS-------------RDIY-HTKRMQHVFCVKYSMDSKYIISGSD--- 335 (433)
T ss_pred eEEEeccCCCcch-hccccccceEEEeecCCCcc-------------hhhh-hHhhhheeeEEEEeccccEEEecCC---
Confidence 9999999999996 78999999999999987411 1111 1111 23899999999999999999
Q ss_pred ccceeEEEEe
Q 011709 453 YANKKIKIYC 462 (479)
Q Consensus 453 ~~d~~i~i~~ 462 (479)
|++|++|.
T Consensus 336 --d~nvRlWk 343 (433)
T KOG0268|consen 336 --DGNVRLWK 343 (433)
T ss_pred --Ccceeeee
Confidence 99999994
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3e-33 Score=241.59 Aligned_cols=236 Identities=22% Similarity=0.408 Sum_probs=203.3
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg 218 (479)
....|.|+.| +...+++|..|.+|+|||..+. .+...+.||+++ |.|+.|. .+.+++|+.|.
T Consensus 196 ~skgVYClQY---DD~kiVSGlrDnTikiWD~n~~------------~c~~~L~GHtGS-VLCLqyd--~rviisGSSDs 257 (499)
T KOG0281|consen 196 NSKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSL------------ECLKILTGHTGS-VLCLQYD--ERVIVSGSSDS 257 (499)
T ss_pred cCCceEEEEe---cchhhhcccccCceEEeccccH------------HHHHhhhcCCCc-EEeeecc--ceEEEecCCCc
Confidence 3467999999 5568999999999999999887 677789999985 8899985 55899999999
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (479)
+|++||++++. ++.++-+|...|..+.|+. .++++++
T Consensus 258 TvrvWDv~tge----------------------------------------~l~tlihHceaVLhlrf~n---g~mvtcS 294 (499)
T KOG0281|consen 258 TVRVWDVNTGE----------------------------------------PLNTLIHHCEAVLHLRFSN---GYMVTCS 294 (499)
T ss_pred eEEEEeccCCc----------------------------------------hhhHHhhhcceeEEEEEeC---CEEEEec
Confidence 99999997654 3477888999999999974 4799999
Q ss_pred cCCeEEEEeCCCCC-CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEE
Q 011709 299 DDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (479)
Q Consensus 299 ~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 377 (479)
.|.++.+||+.... ..+.+.+.+|...|+.+.|+ ..||++++.|.+|++|++.+ +..+.++.+|...|-|
T Consensus 295 kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st------~efvRtl~gHkRGIAC 365 (499)
T KOG0281|consen 295 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTST------CEFVRTLNGHKRGIAC 365 (499)
T ss_pred CCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccc------eeeehhhhccccccee
Confidence 99999999998765 22456677999999999995 47999999999999999999 8999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccce
Q 011709 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANK 456 (479)
Q Consensus 378 l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~ 456 (479)
+++. ++ ++++||.|.+|++||++.+ .++-+..||.. |.++.| |...+++|+. ||
T Consensus 366 lQYr--~r-lvVSGSSDntIRlwdi~~G---------------~cLRvLeGHEeLvRciRF--d~krIVSGaY-----DG 420 (499)
T KOG0281|consen 366 LQYR--DR-LVVSGSSDNTIRLWDIECG---------------ACLRVLEGHEELVRCIRF--DNKRIVSGAY-----DG 420 (499)
T ss_pred hhcc--Ce-EEEecCCCceEEEEecccc---------------HHHHHHhchHHhhhheee--cCceeeeccc-----cc
Confidence 9874 44 7889999999999999985 44557889988 889999 5578999999 99
Q ss_pred eEEEEeecccccc
Q 011709 457 KIKIYCHLEALKS 469 (479)
Q Consensus 457 ~i~i~~~~~~~~~ 469 (479)
+|++|+...-+++
T Consensus 421 kikvWdl~aaldp 433 (499)
T KOG0281|consen 421 KIKVWDLQAALDP 433 (499)
T ss_pred eEEEEecccccCC
Confidence 9999987766654
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-31 Score=252.24 Aligned_cols=256 Identities=19% Similarity=0.316 Sum_probs=215.7
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEE
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLS 213 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s 213 (479)
-..+|...|.++.... .+.+||||+.|.++++|.++.... ...+.....+|+. .|.+++++..+. +|++
T Consensus 360 ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~--------~~~~~a~~~gH~~-svgava~~~~~asffvs 429 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCS--------KSLCVAQANGHTN-SVGAVAGSKLGASFFVS 429 (775)
T ss_pred EEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcc--------hhhhhhhhccccc-ccceeeecccCccEEEE
Confidence 4468999999999444 568999999999999999854421 2255667889997 489999987654 8999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
+|.|++|++|++........ + .......+...|...|++++.+|.+ .+
T Consensus 430 vS~D~tlK~W~l~~s~~~~~--~-----------------------------~~~~~~~t~~aHdKdIN~Vaia~nd-kL 477 (775)
T KOG0319|consen 430 VSQDCTLKLWDLPKSKETAF--P-----------------------------IVLTCRYTERAHDKDINCVAIAPND-KL 477 (775)
T ss_pred ecCCceEEEecCCCcccccc--c-----------------------------ceehhhHHHHhhcccccceEecCCC-ce
Confidence 99999999999975221110 0 1111123445699999999999998 79
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
++|||.|.+.+||++.... +..++.+|...|.++.|+| ..+.++|+|.|++|+||.+.+ ..++.++.||+.
T Consensus 478 iAT~SqDktaKiW~le~~~--l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~------fSClkT~eGH~~ 548 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQLR--LLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSIST------FSCLKTFEGHTS 548 (775)
T ss_pred EEecccccceeeecccCce--EEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEecc------ceeeeeecCccc
Confidence 9999999999999999666 8899999999999999999 889999999999999999999 789999999999
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCcc
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLS 452 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~ 452 (479)
.|..+.|-.++.. |+|++.||.|+||++.+. +......+|.+ +.+++-+|+..++++|+.
T Consensus 549 aVlra~F~~~~~q-liS~~adGliKlWnikt~---------------eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~--- 609 (775)
T KOG0319|consen 549 AVLRASFIRNGKQ-LISAGADGLIKLWNIKTN---------------ECEMTLDAHNDRVWALSVSPLLDMFVTGGG--- 609 (775)
T ss_pred eeEeeeeeeCCcE-EEeccCCCcEEEEeccch---------------hhhhhhhhccceeEEEeecCccceeEecCC---
Confidence 9999999999996 669999999999999984 33456788888 899999999999999999
Q ss_pred ccceeEEEEe
Q 011709 453 YANKKIKIYC 462 (479)
Q Consensus 453 ~~d~~i~i~~ 462 (479)
||.|-+|.
T Consensus 610 --Dg~i~~wk 617 (775)
T KOG0319|consen 610 --DGRIIFWK 617 (775)
T ss_pred --CeEEEEee
Confidence 99999994
No 38
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.6e-33 Score=249.02 Aligned_cols=257 Identities=23% Similarity=0.335 Sum_probs=212.8
Q ss_pred CceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC
Q 011709 129 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 208 (479)
Q Consensus 129 ~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~ 208 (479)
|...+...-+|+..|+++.|+|..+.+|++|+.|+.|+||++... ..++.++.||.. +|..++|+++|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-----------~~~lrtf~gH~k-~Vrd~~~s~~g 270 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-----------RRCLRTFKGHRK-PVRDASFNNCG 270 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-----------cceehhhhcchh-hhhhhhccccC
Confidence 444466778999999999999999999999999999999999873 278889999997 69999999999
Q ss_pred CcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee
Q 011709 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 209 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (479)
..++|+|.|+.|++||++++.+...+. ....++++.|+|
T Consensus 271 ~~fLS~sfD~~lKlwDtETG~~~~~f~-----------------------------------------~~~~~~cvkf~p 309 (503)
T KOG0282|consen 271 TSFLSASFDRFLKLWDTETGQVLSRFH-----------------------------------------LDKVPTCVKFHP 309 (503)
T ss_pred CeeeeeecceeeeeeccccceEEEEEe-----------------------------------------cCCCceeeecCC
Confidence 999999999999999999876643221 234688999999
Q ss_pred CCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC--------
Q 011709 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG-------- 360 (479)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~-------- 360 (479)
++.+.|++|+.|+.|+.||+|+++ +++.+..|-+.|+.+.|-+ ++.++++.++|++++||+.+......
T Consensus 310 d~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~h 386 (503)
T KOG0282|consen 310 DNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMH 386 (503)
T ss_pred CCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhc
Confidence 998999999999999999999999 8888889999999999999 99999999999999999988643100
Q ss_pred ------------------C--------------CCceeeecCCC--CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCC
Q 011709 361 ------------------V--------------GSPINKFEGHS--AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 406 (479)
Q Consensus 361 ------------------~--------------~~~~~~~~~h~--~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~ 406 (479)
. ...-..+.+|. +--..+.|||||++ |++|+.||.+.+||.++.
T Consensus 387 smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~- 464 (503)
T KOG0282|consen 387 TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTT- 464 (503)
T ss_pred cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhh-
Confidence 0 00111233553 34567899999996 679999999999999873
Q ss_pred ccccCCCCCCCCCCeeEEEeCCC-CCceeEEEecCC-CeeeecCCCccccceeEEEEe
Q 011709 407 KKVEQGPRTTNYPAGLFFQHAGH-SPSSSIKFVLRE-SCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 407 ~~~~~~~~~~~~~~~l~~~~~gh-~~~~~~~~sp~~-~~l~~~~~~~~~~d~~i~i~~ 462 (479)
.++-...+| ..++.+.|+|.. +.+|++|. +|.|++|+
T Consensus 465 --------------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w-----~G~Ikiwd 503 (503)
T KOG0282|consen 465 --------------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGW-----DGLIKIWD 503 (503)
T ss_pred --------------hhhhccccCCcceEEEEecCCCcceeEeccc-----CceeEecC
Confidence 444456667 448999999975 56777777 99999995
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.3e-30 Score=271.21 Aligned_cols=262 Identities=19% Similarity=0.233 Sum_probs=203.9
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC-CCCcEEEec
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGG 215 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-~~~~l~s~s 215 (479)
+.+...|.++.|+|..+.+||+++.||+|+|||+.++ +....+.+|.+ .|++++|+| ++.+|++|+
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~------------~~~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS------------QLVTEMKEHEK-RVWSIDYSSADPTLLASGS 595 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC------------eEEEEecCCCC-CEEEEEEcCCCCCEEEEEc
Confidence 3456789999999977889999999999999999876 55677889987 599999997 678999999
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
.||+|++||++++.. +..+..+ ..|.++.|++....+|+
T Consensus 596 ~Dg~v~iWd~~~~~~----------------------------------------~~~~~~~-~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 596 DDGSVKLWSINQGVS----------------------------------------IGTIKTK-ANICCVQFPSESGRSLA 634 (793)
T ss_pred CCCEEEEEECCCCcE----------------------------------------EEEEecC-CCeEEEEEeCCCCCEEE
Confidence 999999999975322 1333333 56889999765448999
Q ss_pred EEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcE
Q 011709 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 375 (479)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v 375 (479)
+|+.||.|++||+++... ....+.+|...|.++.|. ++.+|++++.|++|++||++.........++..+.+|...+
T Consensus 635 tgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i 711 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK 711 (793)
T ss_pred EEeCCCeEEEEECCCCCc-cceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence 999999999999998653 245566899999999996 57899999999999999998632211246788999999999
Q ss_pred EEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCcccc
Q 011709 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYA 454 (479)
Q Consensus 376 ~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~ 454 (479)
.+++|+|++. +||+|+.|+.|+||+.................... ....+|.. |.+++|+|++..|++++.
T Consensus 712 ~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~~V~~v~ws~~~~~lva~~~----- 783 (793)
T PLN00181 712 NFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSG--LEVDDASQFISSVCWRGQSSTLVAANS----- 783 (793)
T ss_pred eEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEEecccCCcccc--cccCCCCcEEEEEEEcCCCCeEEEecC-----
Confidence 9999999998 57899999999999987531110000000000001 11223333 899999999999999999
Q ss_pred ceeEEEEee
Q 011709 455 NKKIKIYCH 463 (479)
Q Consensus 455 d~~i~i~~~ 463 (479)
+|.|++|+.
T Consensus 784 dG~I~i~~~ 792 (793)
T PLN00181 784 TGNIKILEM 792 (793)
T ss_pred CCcEEEEec
Confidence 999999975
No 40
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.6e-30 Score=213.82 Aligned_cols=265 Identities=16% Similarity=0.280 Sum_probs=203.5
Q ss_pred cccCCCcceEEEEEEEe-----eCCCCCceEEEEEEEec--Ccchhh--hhcccccCcccCCCceeeEEEecCCCceeEE
Q 011709 76 LEQATYKNRQRLYLSEQ-----TDGSVPNTLVIANCEVV--KPRVAA--AEHISQFNEEARSPFVKKHKTIIHPGEVNRI 146 (479)
Q Consensus 76 ~~~~~~~~~~~l~~~~~-----~~~~~~~~~~i~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 146 (479)
+..++|+.+.|+|-... |-.-.+. .|-.+++. +...++ -.+++.|+-...+|. .+....+|...|+++
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiqh~ds--qVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~-Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQHPDS--QVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPN-PVATFEGHTKNVTAV 89 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEecCcc--ceeeEEEcCCcchhhhccCCeeEEEEccCCCCC-ceeEEeccCCceEEE
Confidence 45667888888885421 1111111 12222321 122222 357888887666664 467778999999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecC
Q 011709 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ 226 (479)
Q Consensus 147 ~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~ 226 (479)
.|.- +++.++|||+||+++|||+.... +...+ .|. ++|+++..+|+...|++|..+|.|++||+.
T Consensus 90 gF~~-dgrWMyTgseDgt~kIWdlR~~~------------~qR~~-~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 90 GFQC-DGRWMYTGSEDGTVKIWDLRSLS------------CQRNY-QHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred EEee-cCeEEEecCCCceEEEEeccCcc------------cchhc-cCC-CCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence 9998 99999999999999999999862 22223 334 369999999999999999999999999998
Q ss_pred CCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEE
Q 011709 227 DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 306 (479)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 306 (479)
.........+ .....|.++...|+| .+++.+..-|...+|
T Consensus 155 ~~~c~~~liP---------------------------------------e~~~~i~sl~v~~dg-sml~a~nnkG~cyvW 194 (311)
T KOG0315|consen 155 ENSCTHELIP---------------------------------------EDDTSIQSLTVMPDG-SMLAAANNKGNCYVW 194 (311)
T ss_pred CCccccccCC---------------------------------------CCCcceeeEEEcCCC-cEEEEecCCccEEEE
Confidence 7654322222 233579999999999 689999999999999
Q ss_pred eCCCCCC----CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEec
Q 011709 307 DARVGTS----PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 382 (479)
Q Consensus 307 d~~~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 382 (479)
++-.... ..+..+..|++.+..+.+|| ++.+||++|.|.+++||+.... -+.-..+.+|...+..++||.
T Consensus 195 ~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~-----~kle~~l~gh~rWvWdc~FS~ 268 (311)
T KOG0315|consen 195 RLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF-----FKLELVLTGHQRWVWDCAFSA 268 (311)
T ss_pred EccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCc-----eeeEEEeecCCceEEeeeecc
Confidence 9977542 13445678999999999999 9999999999999999999873 145567889999999999999
Q ss_pred CCCcEEEEEeCCCCEEEEeCCCC
Q 011709 383 DKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 383 ~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+++| |++|+.|+.+++||++.+
T Consensus 269 dg~Y-lvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 269 DGEY-LVTASSDHTARLWDLSAG 290 (311)
T ss_pred CccE-EEecCCCCceeecccccC
Confidence 9997 569999999999999984
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.8e-31 Score=256.86 Aligned_cols=247 Identities=21% Similarity=0.428 Sum_probs=207.1
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
.+|...|++++|+| ++.++++|+.|++|+|||+... ...+.++.+|.. .|++++|+|+++.+++|+.
T Consensus 200 ~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~-----------~~~~~~l~gH~~-~v~~~~f~p~g~~i~Sgs~ 266 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDD-----------GRNLKTLKGHST-YVTSVAFSPDGNLLVSGSD 266 (456)
T ss_pred cccccceeeeEECC-CCcEEEEecCCceEEEeeccCC-----------CeEEEEecCCCC-ceEEEEecCCCCEEEEecC
Confidence 68999999999999 8889999999999999999332 267788999997 5899999999999999999
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
|++|++||++++. +...+.+|...|++++|++++ ++|++
T Consensus 267 D~tvriWd~~~~~----------------------------------------~~~~l~~hs~~is~~~f~~d~-~~l~s 305 (456)
T KOG0266|consen 267 DGTVRIWDVRTGE----------------------------------------CVRKLKGHSDGISGLAFSPDG-NLLVS 305 (456)
T ss_pred CCcEEEEeccCCe----------------------------------------EEEeeeccCCceEEEEECCCC-CEEEE
Confidence 9999999997533 347889999999999999999 78999
Q ss_pred EecCCeEEEEeCCCCCCCceeeeccCCC--CeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCc
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (479)
++.|+.|++||+.++...+...+..+.. .++++.|+| ++.+|++++.|+.+++||++. +..+..+.+|...
T Consensus 306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~------~~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRS------GKSVGTYTGHSNL 378 (456)
T ss_pred cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccC------CcceeeecccCCc
Confidence 9999999999999988322344445544 499999999 999999999999999999998 7788888888875
Q ss_pred ---EEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC-CC-ceeEEEecCCCeeeecCC
Q 011709 375 ---VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-SP-SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 375 ---v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh-~~-~~~~~~sp~~~~l~~~~~ 449 (479)
+.+...++.+.+ +++|+.|+.|.+||+... ..+-...|| .. +..++|+|...++++.+.
T Consensus 379 ~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~---------------~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 379 VRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSG---------------GILQRLEGHSKAAVSDLSSHPTENLIASSSF 442 (456)
T ss_pred ceeEecccccCCCCe-EEEEeCCceEEEEeCCcc---------------chhhhhcCCCCCceeccccCCCcCeeeecCc
Confidence 344455677775 679999999999999974 223345566 44 799999999999999882
Q ss_pred CccccceeEEEEee
Q 011709 450 GLSYANKKIKIYCH 463 (479)
Q Consensus 450 ~~~~~d~~i~i~~~ 463 (479)
..|+.|++|..
T Consensus 443 ---~~d~~~~~w~~ 453 (456)
T KOG0266|consen 443 ---EGDGLIRLWKY 453 (456)
T ss_pred ---CCCceEEEecC
Confidence 11889999964
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.2e-31 Score=230.91 Aligned_cols=275 Identities=21% Similarity=0.369 Sum_probs=229.0
Q ss_pred eCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCC
Q 011709 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA 172 (479)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~ 172 (479)
.+|+.+..++||++..-. -+...-+|-..|..+++++ .-.+|++++.|+.|+.||++.
T Consensus 167 ~tgs~DrtikIwDlatg~---------------------LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 167 ATGSADRTIKIWDLATGQ---------------------LKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred EecCCCceeEEEEcccCe---------------------EEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechh
Confidence 567789999999875311 1455668999999999999 555999999999999999998
Q ss_pred CCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecC
Q 011709 173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 252 (479)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (479)
. +.+..+.||-. .|+|++.+|.-..|++|+.|.+++|||+++..
T Consensus 225 n------------kvIR~YhGHlS-~V~~L~lhPTldvl~t~grDst~RvWDiRtr~----------------------- 268 (460)
T KOG0285|consen 225 N------------KVIRHYHGHLS-GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA----------------------- 268 (460)
T ss_pred h------------hhHHHhccccc-eeEEEeccccceeEEecCCcceEEEeeecccc-----------------------
Confidence 7 77888999997 59999999999999999999999999997532
Q ss_pred CCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEec
Q 011709 253 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 332 (479)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 332 (479)
.+..+.||...|.++.+.|.++ .+++|+.|++|++||++.++ ....+..|...|.+++.+
T Consensus 269 -----------------~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agk--t~~tlt~hkksvral~lh 328 (460)
T KOG0285|consen 269 -----------------SVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGK--TMITLTHHKKSVRALCLH 328 (460)
T ss_pred -----------------eEEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCc--eeEeeecccceeeEEecC
Confidence 3478999999999999999885 59999999999999999999 677788999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCC
Q 011709 333 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 412 (479)
Q Consensus 333 p~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~ 412 (479)
| ..+.||+++.| .|+-|++.. +..++.+.+|..-|++++.+.|+ ++++|++.|.+.+||.+.+-+-+ ..
T Consensus 329 P-~e~~fASas~d-nik~w~~p~------g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ-~~ 397 (460)
T KOG0285|consen 329 P-KENLFASASPD-NIKQWKLPE------GEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQ-RG 397 (460)
T ss_pred C-chhhhhccCCc-cceeccCCc------cchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccc-cc
Confidence 9 88999998877 689999988 78888899999999999999887 56799999999999999853322 21
Q ss_pred CCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 413 PRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 413 ~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
.... .|.. ..+-.+|.+.+|...+..|+++.. |++|++|...+.
T Consensus 398 ~t~v-qpGS----l~sEagI~as~fDktg~rlit~ea-----dKtIk~~keDe~ 441 (460)
T KOG0285|consen 398 QTIV-QPGS----LESEAGIFASCFDKTGSRLITGEA-----DKTIKMYKEDEH 441 (460)
T ss_pred cccc-cCCc----cccccceeEEeecccCceEEeccC-----CcceEEEecccc
Confidence 1110 1111 112234789999999999999999 999999965443
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-30 Score=241.40 Aligned_cols=279 Identities=25% Similarity=0.433 Sum_probs=223.7
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
.+|.++|+++.|+| ++.+|++++.||.|++|++.+. .....+.+|.. .+..+.|+|++++|++++.
T Consensus 6 ~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~ 71 (289)
T cd00200 6 KGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETG------------ELLRTLKGHTG-PVRDVAASADGTYLASGSS 71 (289)
T ss_pred cccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCC------------CcEEEEecCCc-ceeEEEECCCCCEEEEEcC
Confidence 37999999999999 7889999999999999999876 45566778876 4789999999999999999
Q ss_pred CCcEEEEecCCCccccccCCc----ccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 217 DKSVVLWSIQDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
||.|++||+.+.......... ..........++... ..++.+.+|+.........+..|...|.+++|+|++ .
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 148 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS--SRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG-T 148 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEe--cCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC-C
Confidence 999999999875332221110 001111111222221 136677888888777778888899999999999987 6
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
++++++.||.|++||+++++ ....+..|...+.+++|+| +++.+++++.||.|++||++. +.++..+..|.
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~~~~ 219 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGK--CVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST------GKCLGTLRGHE 219 (289)
T ss_pred EEEEEcCCCcEEEEEccccc--cceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCC------CceecchhhcC
Confidence 78888889999999999877 5666778888999999999 888999999999999999998 67788888899
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCc
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGL 451 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~ 451 (479)
..+.+++|+|++. ++++++.||.|++||+... .......+|.. +.+++|+|++..|++++.
T Consensus 220 ~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 281 (289)
T cd00200 220 NGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTG---------------ECVQTLSGHTNSVTSLAWSPDGKRLASGSA-- 281 (289)
T ss_pred CceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCc---------------eeEEEccccCCcEEEEEECCCCCEEEEecC--
Confidence 9999999999966 6778878999999999863 22333345654 899999999999999999
Q ss_pred cccceeEEEEe
Q 011709 452 SYANKKIKIYC 462 (479)
Q Consensus 452 ~~~d~~i~i~~ 462 (479)
|+.|++|+
T Consensus 282 ---d~~i~iw~ 289 (289)
T cd00200 282 ---DGTIRIWD 289 (289)
T ss_pred ---CCeEEecC
Confidence 99999995
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-31 Score=244.06 Aligned_cols=204 Identities=23% Similarity=0.444 Sum_probs=186.0
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCc
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~ 219 (479)
.-+|.+.+|.+ ..+++++|++|..|+||++.+. ..+..+..|.+ -|.|++.+|...+++|+|.|-+
T Consensus 55 ~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~------------ekV~~FeAH~D-yIR~iavHPt~P~vLtsSDDm~ 120 (794)
T KOG0276|consen 55 EVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTG------------EKVKTFEAHSD-YIRSIAVHPTLPYVLTSSDDMT 120 (794)
T ss_pred ccchhhheeee-ccceEEEecCCceEEEEecccc------------eeeEEeecccc-ceeeeeecCCCCeEEecCCccE
Confidence 34788889988 7889999999999999999998 67789999998 5999999999999999999999
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
|++||-+.. ..+.++++||...|.+++|.|.+.+.|++++-
T Consensus 121 iKlW~we~~---------------------------------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 121 IKLWDWENE---------------------------------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred EEEeeccCc---------------------------------------eeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 999998742 33448899999999999999999999999999
Q ss_pred CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCC-CCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEE
Q 011709 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 378 (479)
|++|++|.+.+.. +..++.+|...|+|++|-+. +..||++|++|.+|+|||.++ ..+++++.||...|+.+
T Consensus 162 DrTVKVWslgs~~--~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt------k~CV~TLeGHt~Nvs~v 233 (794)
T KOG0276|consen 162 DRTVKVWSLGSPH--PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT------KSCVQTLEGHTNNVSFV 233 (794)
T ss_pred cccEEEEEcCCCC--CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch------HHHHHHhhcccccceEE
Confidence 9999999999887 78889999999999999872 235999999999999999999 78999999999999999
Q ss_pred EEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 379 QWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 379 ~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
.|+|.-+ +++|||.||+|+||+-.+.
T Consensus 234 ~fhp~lp-iiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 234 FFHPELP-IIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred EecCCCc-EEEEecCCccEEEecCcce
Confidence 9999998 7889999999999998774
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=7.3e-31 Score=217.75 Aligned_cols=244 Identities=20% Similarity=0.343 Sum_probs=200.2
Q ss_pred eEEEecCCCCcEEEEEeC-------CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC-CcEEEec
Q 011709 144 NRIRELPQNTKIVATHTD-------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGG 215 (479)
Q Consensus 144 ~~l~~~p~~~~~lat~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~-~~l~s~s 215 (479)
.++.|+|.-.+.||.+.. .|.+.|-++.... .......+.-. ..++.++|+++. ..+++++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~---------gi~e~~s~d~~--D~LfdV~Wse~~e~~~~~a~ 80 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK---------GIQECQSYDTE--DGLFDVAWSENHENQVIAAS 80 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCC---------CeEEEEeeecc--cceeEeeecCCCcceEEEEe
Confidence 578899976666666543 6789999987431 11222222222 348999999974 5888999
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
.||++++||+.. ...|++.++.|...|.++.|++.....++
T Consensus 81 GDGSLrl~d~~~---------------------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~l 121 (311)
T KOG0277|consen 81 GDGSLRLFDLTM---------------------------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFL 121 (311)
T ss_pred cCceEEEeccCC---------------------------------------CCcchhHHHhhhhheEEeccccccceeEE
Confidence 999999999642 22356889999999999999998778899
Q ss_pred EEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcE
Q 011709 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 375 (479)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v 375 (479)
++|.|++|++||...+. .+.++.+|..-|...+|+|..+++++++|.||++++||+|.. ++.+. +..|...|
T Consensus 122 tsSWD~TiKLW~~~r~~--Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-----gk~~~-i~ah~~Ei 193 (311)
T KOG0277|consen 122 TSSWDGTIKLWDPNRPN--SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-----GKFMS-IEAHNSEI 193 (311)
T ss_pred eeccCCceEeecCCCCc--ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-----CceeE-EEecccee
Confidence 99999999999998877 688899999999999999999999999999999999999985 34544 89999999
Q ss_pred EEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCC-CeeeecCCCccc
Q 011709 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRE-SCLVDNNHGLSY 453 (479)
Q Consensus 376 ~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~-~~l~~~~~~~~~ 453 (479)
.++.|+.-.+++++||+.|+.|++||+++.. .-+|+..||.- |..++|||.. ..|++++.
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY---- 255 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--------------TPLFELNGHGLAVRKVKFSPHHASLLASASY---- 255 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhhcc--------------ccceeecCCceEEEEEecCcchhhHhhhccc----
Confidence 9999999999999999999999999999852 12677788887 9999999964 57777777
Q ss_pred cceeEEEEeec
Q 011709 454 ANKKIKIYCHL 464 (479)
Q Consensus 454 ~d~~i~i~~~~ 464 (479)
|-+++||+..
T Consensus 256 -DmT~riw~~~ 265 (311)
T KOG0277|consen 256 -DMTVRIWDPE 265 (311)
T ss_pred -cceEEecccc
Confidence 9999999765
No 46
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=4.1e-29 Score=203.94 Aligned_cols=306 Identities=17% Similarity=0.240 Sum_probs=232.7
Q ss_pred CCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCC-CC-CCCCc-EEEeccCCCceeeeee
Q 011709 128 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLG-AT-NSRPD-LILTGHQDNAEFALAM 204 (479)
Q Consensus 128 ~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~-~~-~~~~~-~~~~~h~~~~v~~l~~ 204 (479)
.+.+..+.++.....|.+++|+| .+.+.|.|++..+.+|-.+..-........ .. .+... ..-+.|.+ .|+|.+|
T Consensus 20 k~~f~~i~~l~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkg-siyc~~w 97 (350)
T KOG0641|consen 20 KKHFEAINILEDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKG-SIYCTAW 97 (350)
T ss_pred ccceEEEEEecchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCc-cEEEEEe
Confidence 34556777788889999999999 888999999999999986654322211000 00 10111 22234554 6999999
Q ss_pred cCCCCcEEEecCCCcEEEEecCCCccccccCCcccccC------------CCCCceeecCCCCCCCCCCCCCCCCCCCce
Q 011709 205 CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSA------------GSSGSIIKQSPKPGDGNDKAADGPSVGPRG 272 (479)
Q Consensus 205 s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (479)
+|.|.+|++|+.|++|++.-++...+............ ..+...+..+.+.++..+.+.+...++..+
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce
Confidence 99999999999999999988876544333222211111 223334555666778888889999999999
Q ss_pred eecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeecc--C-----CCCeEEEEecCCCCcEEEEEeCC
Q 011709 273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--H-----DADLHCVDWNPLDDNLILTGSAD 345 (479)
Q Consensus 273 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~-----~~~v~~l~~sp~~~~~l~tgs~d 345 (479)
.+.+|++-|.++- +-.+ .+|++|+.|.+|++||+|-.. ++.++.. | .+.|.+++..| .|++|++|-.|
T Consensus 178 a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~d 252 (350)
T KOG0641|consen 178 ALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHAD 252 (350)
T ss_pred eecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccc--eeeeccCcccCCCcccceeEEEEECC-CcceeeeccCC
Confidence 9999999998873 2234 689999999999999999887 5555431 2 35789999999 99999999999
Q ss_pred CcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEE
Q 011709 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (479)
Q Consensus 346 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 425 (479)
....+||+|. +++++.+..|...|.++.|+|...++ .+++.|..|++-|++.. ...+ -.+.+
T Consensus 253 ssc~lydirg------~r~iq~f~phsadir~vrfsp~a~yl-lt~syd~~ikltdlqgd--la~e---------l~~~v 314 (350)
T KOG0641|consen 253 SSCMLYDIRG------GRMIQRFHPHSADIRCVRFSPGAHYL-LTCSYDMKIKLTDLQGD--LAHE---------LPIMV 314 (350)
T ss_pred CceEEEEeeC------CceeeeeCCCccceeEEEeCCCceEE-EEecccceEEEeecccc--hhhc---------CceEE
Confidence 9999999998 89999999999999999999988865 59999999999999752 1110 11345
Q ss_pred eCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 426 HAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 426 ~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
...|.. +..+.|+|..-.+++.+. |+++.+|..
T Consensus 315 v~ehkdk~i~~rwh~~d~sfisssa-----dkt~tlwa~ 348 (350)
T KOG0641|consen 315 VAEHKDKAIQCRWHPQDFSFISSSA-----DKTATLWAL 348 (350)
T ss_pred EEeccCceEEEEecCccceeeeccC-----cceEEEecc
Confidence 566777 899999999999999988 899999954
No 47
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=9.1e-30 Score=247.32 Aligned_cols=267 Identities=19% Similarity=0.305 Sum_probs=196.5
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCC-CCCcEEEeccCCCceeeeeecC-CCCcEEEecCC
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATN-SRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKD 217 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~h~~~~v~~l~~s~-~~~~l~s~s~d 217 (479)
-..|+.....+ ++..+++++.+..+..|+...+........... ......+.+|.+ .|++++|+| ++++|++|+.|
T Consensus 20 ~~~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~-~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 20 FLNVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEG-PIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred eeccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCC-CEEEEEEcCCCCCEEEEEeCC
Confidence 34455555555 544566777777777787655421111000000 011235789997 599999999 78899999999
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
|+|++||+.+..... ....++..+.+|...|.+++|+|.+.++|+++
T Consensus 98 gtIkIWdi~~~~~~~---------------------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg 144 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQ---------------------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASA 144 (493)
T ss_pred CEEEEEecCCCcccc---------------------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEE
Confidence 999999997532100 01123467889999999999999876799999
Q ss_pred ecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCc-EE
Q 011709 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA-VL 376 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-v~ 376 (479)
+.|++|++||++++. ....+.+|...|.+++|+| ++.+|++|+.||.|+|||+++ +..+..+.+|.+. +.
T Consensus 145 s~DgtVrIWDl~tg~--~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rs------g~~v~tl~~H~~~~~~ 215 (493)
T PTZ00421 145 GADMVVNVWDVERGK--AVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRD------GTIVSSVEAHASAKSQ 215 (493)
T ss_pred eCCCEEEEEECCCCe--EEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCC------CcEEEEEecCCCCcce
Confidence 999999999999887 6777788999999999999 999999999999999999998 7788889899875 45
Q ss_pred EEEEecCCCcEEEEE---eCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccc
Q 011709 377 CVQWSPDKSSVFGSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSY 453 (479)
Q Consensus 377 ~l~~~p~~~~llas~---s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~ 453 (479)
.+.|.+++..++++| +.|+.|++||++....+. ..........+....|++++..|++++.+
T Consensus 216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~------------~~~~~d~~~~~~~~~~d~d~~~L~lggkg--- 280 (493)
T PTZ00421 216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY------------STVDLDQSSALFIPFFDEDTNLLYIGSKG--- 280 (493)
T ss_pred EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce------------eEeccCCCCceEEEEEcCCCCEEEEEEeC---
Confidence 788999888655444 248999999998742211 11111222235567789999999988865
Q ss_pred cceeEEEEeeccc
Q 011709 454 ANKKIKIYCHLEA 466 (479)
Q Consensus 454 ~d~~i~i~~~~~~ 466 (479)
|+.|++|+....
T Consensus 281 -Dg~Iriwdl~~~ 292 (493)
T PTZ00421 281 -EGNIRCFELMNE 292 (493)
T ss_pred -CCeEEEEEeeCC
Confidence 999999987653
No 48
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=1.2e-29 Score=265.74 Aligned_cols=258 Identities=20% Similarity=0.283 Sum_probs=203.7
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC-CCcEEEe
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSG 214 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~-~~~l~s~ 214 (479)
...|.+.|.+++|+| ++++||+|+.|+.|+|||+........ ....+...+.++. .+.+++|++. +.+|+++
T Consensus 479 ~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~----~~~~~~~~~~~~~--~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 479 LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGR----DIHYPVVELASRS--KLSGICWNSYIKSQVASS 551 (793)
T ss_pred ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCccccccc----ccccceEEecccC--ceeeEEeccCCCCEEEEE
Confidence 345999999999999 888999999999999999865311100 0112233444443 4889999875 6799999
Q ss_pred cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEE
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (479)
+.||+|++||+.++. .+..+.+|...|++++|+|.++.+|
T Consensus 552 ~~Dg~v~lWd~~~~~----------------------------------------~~~~~~~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 552 NFEGVVQVWDVARSQ----------------------------------------LVTEMKEHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred eCCCeEEEEECCCCe----------------------------------------EEEEecCCCCCEEEEEEcCCCCCEE
Confidence 999999999996532 2256778999999999998544789
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCc
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (479)
++|+.||+|++||++++. .+..+.. ...+.++.|++.++.+|++|+.||.|++||++.. ..++..+.+|...
T Consensus 592 ~Sgs~Dg~v~iWd~~~~~--~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~ 663 (793)
T PLN00181 592 ASGSDDGSVKLWSINQGV--SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKT 663 (793)
T ss_pred EEEcCCCEEEEEECCCCc--EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCC
Confidence 999999999999999877 5555544 4679999997647999999999999999999872 1367788899999
Q ss_pred EEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccc
Q 011709 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSY 453 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~ 453 (479)
|.++.|. ++. .|++++.|++|+|||++..... .....+....||.. +..++|+|++.+|++++.
T Consensus 664 V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~---------~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~---- 728 (793)
T PLN00181 664 VSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISG---------INETPLHSFMGHTNVKNFVGLSVSDGYIATGSE---- 728 (793)
T ss_pred EEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccc---------cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC----
Confidence 9999997 555 4779999999999999763110 01133556778887 789999999999999999
Q ss_pred cceeEEEEeec
Q 011709 454 ANKKIKIYCHL 464 (479)
Q Consensus 454 ~d~~i~i~~~~ 464 (479)
|+.|++|+..
T Consensus 729 -D~~v~iw~~~ 738 (793)
T PLN00181 729 -TNEVFVYHKA 738 (793)
T ss_pred -CCEEEEEECC
Confidence 9999999854
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=6.2e-31 Score=243.35 Aligned_cols=247 Identities=19% Similarity=0.301 Sum_probs=214.7
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
..|+..|-++.++| ....+.++-.+|.|.|||.++. ..+..+.-..- +|.+..|-+..+++++|+.
T Consensus 10 ~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetq------------tmVksfeV~~~-PvRa~kfiaRknWiv~GsD 75 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQ------------TMVKSFEVSEV-PVRAAKFIARKNWIVTGSD 75 (794)
T ss_pred hccCCceeeeecCC-CCceEEEeeecCeeEEEecccc------------eeeeeeeeccc-chhhheeeeccceEEEecC
Confidence 35889999999999 5568888889999999999988 44444554443 6889999988899999999
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
|..|+||+.++.. .+..+..|...|.+++.||..+ +++|
T Consensus 76 D~~IrVfnynt~e----------------------------------------kV~~FeAH~DyIR~iavHPt~P-~vLt 114 (794)
T KOG0276|consen 76 DMQIRVFNYNTGE----------------------------------------KVKTFEAHSDYIRSIAVHPTLP-YVLT 114 (794)
T ss_pred CceEEEEecccce----------------------------------------eeEEeeccccceeeeeecCCCC-eEEe
Confidence 9999999997643 3478899999999999999995 7999
Q ss_pred EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEE
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 376 (479)
+|+|-+|++||.... +.+.+++.+|...|.+++|+|.|.+.+|+++-|++|+||.+-+ ..+..++.+|...|+
T Consensus 115 sSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs------~~~nfTl~gHekGVN 187 (794)
T KOG0276|consen 115 SSDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS------PHPNFTLEGHEKGVN 187 (794)
T ss_pred cCCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC------CCCceeeeccccCcc
Confidence 999999999999864 3478889999999999999999999999999999999999988 678999999999999
Q ss_pred EEEEecCC--CcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccc
Q 011709 377 CVQWSPDK--SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSY 453 (479)
Q Consensus 377 ~l~~~p~~--~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~ 453 (479)
|+.+-+.| ++ |+||++|.+|+|||.++ ..+ +-+..||+. |+.+.|+|.-..+++|+.
T Consensus 188 ~Vdyy~~gdkpy-lIsgaDD~tiKvWDyQt-k~C--------------V~TLeGHt~Nvs~v~fhp~lpiiisgsE---- 247 (794)
T KOG0276|consen 188 CVDYYTGGDKPY-LISGADDLTIKVWDYQT-KSC--------------VQTLEGHTNNVSFVFFHPELPIIISGSE---- 247 (794)
T ss_pred eEEeccCCCcce-EEecCCCceEEEeecch-HHH--------------HHHhhcccccceEEEecCCCcEEEEecC----
Confidence 99998755 55 56999999999999998 333 335778887 999999999999999999
Q ss_pred cceeEEEEeeccc
Q 011709 454 ANKKIKIYCHLEA 466 (479)
Q Consensus 454 ~d~~i~i~~~~~~ 466 (479)
||+++||....+
T Consensus 248 -DGTvriWhs~Ty 259 (794)
T KOG0276|consen 248 -DGTVRIWNSKTY 259 (794)
T ss_pred -CccEEEecCcce
Confidence 999999976655
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-30 Score=250.16 Aligned_cols=251 Identities=19% Similarity=0.302 Sum_probs=198.2
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCc--------------------------------cc-------
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNR--------------------------------HA------- 178 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~--------------------------------~~------- 178 (479)
+|.|.|.++.|++ +|++||+|+.||.|+||.+...+.. ..
T Consensus 265 ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 7999999999999 9999999999999999998761100 00
Q ss_pred ---------cCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCcee
Q 011709 179 ---------VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 249 (479)
Q Consensus 179 ---------~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (479)
....-..++...+.||.+. |..|.||.+ ++|+|++.|++|+||++....+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~D-ILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C------------------- 402 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTAD-ILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC------------------- 402 (712)
T ss_pred CCccccCCCccccccccchhhhhccchh-heecccccC-CeeEeccccccEEeecCCCcce-------------------
Confidence 0000122566788999984 899999976 4899999999999999975433
Q ss_pred ecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEE
Q 011709 250 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV 329 (479)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l 329 (479)
+..+ .|...|+|++|+|.++++|++|+-||.||||++...+ ++... .-..-|+++
T Consensus 403 ---------------------L~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~-Dl~~lITAv 457 (712)
T KOG0283|consen 403 ---------------------LKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWN-DLRDLITAV 457 (712)
T ss_pred ---------------------eeEE-ecCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeeh-hhhhhheeE
Confidence 2333 4999999999999888999999999999999999877 45444 344789999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec---------CCCCcEEEEEEecCCCcEEEEEeCCCCEEEE
Q 011709 330 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 400 (479)
Q Consensus 330 ~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~---------~h~~~v~~l~~~p~~~~llas~s~Dg~v~iw 400 (479)
+|.| +|++.+.|+.+|.+++|+.+.. +....+. .|. .|++++|.|....-+.+.+.|..|||+
T Consensus 458 cy~P-dGk~avIGt~~G~C~fY~t~~l------k~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~ 529 (712)
T KOG0283|consen 458 CYSP-DGKGAVIGTFNGYCRFYDTEGL------KLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIY 529 (712)
T ss_pred Eecc-CCceEEEEEeccEEEEEEccCC------eEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEE
Confidence 9999 8999999999999999999873 3333221 123 799999998765434467789999999
Q ss_pred eCCCCCccccCCCCCCCCCCeeEEEeCCCCC---ceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 401 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP---SSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 401 d~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~---~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
|++.. .++....|+.. .+...|+.||++|+++++ |..|++|..
T Consensus 530 d~~~~---------------~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se-----Ds~VYiW~~ 575 (712)
T KOG0283|consen 530 DGRDK---------------DLVHKFKGFRNTSSQISASFSSDGKHIVSASE-----DSWVYIWKN 575 (712)
T ss_pred eccch---------------hhhhhhcccccCCcceeeeEccCCCEEEEeec-----CceEEEEeC
Confidence 99662 23333444443 578999999999999998 999999985
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-30 Score=249.91 Aligned_cols=253 Identities=22% Similarity=0.368 Sum_probs=216.4
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCc
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~ 219 (479)
+..|-.++|+| ..-++.++--+|.|++||++-+ .++..+..|.+ +|.+++|+|++.+++||+.|..
T Consensus 9 SsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~------------tli~rFdeHdG-pVRgv~FH~~qplFVSGGDDyk 74 (1202)
T KOG0292|consen 9 SSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMG------------TLIDRFDEHDG-PVRGVDFHPTQPLFVSGGDDYK 74 (1202)
T ss_pred cccccceecCC-CCCEEEEeecCceeeeehhhhh------------hHHhhhhccCC-ccceeeecCCCCeEEecCCccE
Confidence 45788999999 5568889999999999999977 77888999997 6999999999999999999999
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
|+||+..+. +++.++.||-..|..+.||+.-+ .++|+|+
T Consensus 75 IkVWnYk~r----------------------------------------rclftL~GHlDYVRt~~FHheyP-WIlSASD 113 (1202)
T KOG0292|consen 75 IKVWNYKTR----------------------------------------RCLFTLLGHLDYVRTVFFHHEYP-WILSASD 113 (1202)
T ss_pred EEEEecccc----------------------------------------eehhhhccccceeEEeeccCCCc-eEEEccC
Confidence 999998643 34478889999999999999985 7999999
Q ss_pred CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC-------------------
Q 011709 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG------------------- 360 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~------------------- 360 (479)
|.+|+||+..+++ ++..+.+|...|.|..|+| ...+++++|-|-+|||||+.......
T Consensus 114 DQTIrIWNwqsr~--~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dL 190 (1202)
T KOG0292|consen 114 DQTIRIWNWQSRK--CIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDL 190 (1202)
T ss_pred CCeEEEEeccCCc--eEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhh
Confidence 9999999999998 8999999999999999999 89999999999999999986533210
Q ss_pred CC--C--ceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeE
Q 011709 361 VG--S--PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSI 435 (479)
Q Consensus 361 ~~--~--~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~ 435 (479)
-+ . .-+.+.||...|+-++|+|.-+ +++||++|+.|++|.++.. ...+ +-+-.||.. |+++
T Consensus 191 fg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnet------------KaWE-vDtcrgH~nnVssv 256 (1202)
T KOG0292|consen 191 FGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET------------KAWE-VDTCRGHYNNVSSV 256 (1202)
T ss_pred cCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccc------------ccee-ehhhhcccCCcceE
Confidence 00 1 1245689999999999999998 7889999999999998863 1122 224567877 9999
Q ss_pred EEecCCCeeeecCCCccccceeEEEEeecccccc
Q 011709 436 KFVLRESCLVDNNHGLSYANKKIKIYCHLEALKS 469 (479)
Q Consensus 436 ~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~~~ 469 (479)
-|+|....+++.|. |++|++|+...+-..
T Consensus 257 lfhp~q~lIlSnsE-----DksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 257 LFHPHQDLILSNSE-----DKSIRVWDMTKRTSV 285 (1202)
T ss_pred EecCccceeEecCC-----CccEEEEecccccce
Confidence 99999999999999 999999987766433
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-29 Score=222.70 Aligned_cols=302 Identities=17% Similarity=0.273 Sum_probs=225.9
Q ss_pred hhhhhhccccccceeeEEecCCcccCCCcceEEEEEEEe-------eCCCCCceEEEEEEEecCcchhhhhcccccCccc
Q 011709 54 LYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQ-------TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEA 126 (479)
Q Consensus 54 ~y~~~~~~~l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 126 (479)
||.....+.+.-|+.+.+-+.+ .+..+|+-++ ++++.+.+..||.+... ..
T Consensus 201 ll~Dh~c~~~qip~qt~qil~~-------htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d--------------~~- 258 (519)
T KOG0293|consen 201 LLSDHFCGRLQIPSQTWQILQD-------HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD--------------VH- 258 (519)
T ss_pred hhhhcccCcccCCchhhhhHhh-------CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC--------------cc-
Confidence 4555555566666666553322 1123444332 45567777777765421 11
Q ss_pred CCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC
Q 011709 127 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206 (479)
Q Consensus 127 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 206 (479)
..-..+..+|..+|..+.|+| +.++|++|+.|..+.+||+.++.....+. .+|.. .+.+++|.|
T Consensus 259 ---~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~-----------~~~~~-S~~sc~W~p 322 (519)
T KOG0293|consen 259 ---FKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYP-----------SGLGF-SVSSCAWCP 322 (519)
T ss_pred ---eeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcchhhhhcc-----------cCcCC-CcceeEEcc
Confidence 112556789999999999999 66788888888899999999995443211 12233 478999999
Q ss_pred CCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC-CCCceEEEE
Q 011709 207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVT 285 (479)
Q Consensus 207 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~ 285 (479)
||..+++|+.|++|..||++.... ...++ ....|.+++
T Consensus 323 Dg~~~V~Gs~dr~i~~wdlDgn~~-----------------------------------------~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 323 DGFRFVTGSPDRTIIMWDLDGNIL-----------------------------------------GNWEGVRDPKVHDLA 361 (519)
T ss_pred CCceeEecCCCCcEEEecCCcchh-----------------------------------------hcccccccceeEEEE
Confidence 999999999999999999975432 11111 125699999
Q ss_pred EeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCce
Q 011709 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 365 (479)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~ 365 (479)
..++| ..+++.+.|..|++|+..+... .. +.....+|++++.|. ++.++++.=.+..|++||+.. ...+
T Consensus 362 it~Dg-k~vl~v~~d~~i~l~~~e~~~d--r~-lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e------~~lv 430 (519)
T KOG0293|consen 362 ITYDG-KYVLLVTVDKKIRLYNREARVD--RG-LISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEE------NKLV 430 (519)
T ss_pred EcCCC-cEEEEEecccceeeechhhhhh--hc-cccccCceeEEEEcC-CCcEEEEEcccCeeEEeecch------hhHH
Confidence 99999 5777888999999999987652 22 234567899999999 999999999999999999997 6788
Q ss_pred eeecCCCCc--EEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCC-
Q 011709 366 NKFEGHSAA--VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRE- 441 (479)
Q Consensus 366 ~~~~~h~~~--v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~- 441 (479)
..+.||... +..-+|--....++||||.|+.|+||+..++ .++-+..||.. +.+++|+|..
T Consensus 431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---------------kll~~LsGHs~~vNcVswNP~~p 495 (519)
T KOG0293|consen 431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---------------KLLAVLSGHSKTVNCVSWNPADP 495 (519)
T ss_pred HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---------------ceeEeecCCcceeeEEecCCCCH
Confidence 899998764 4455676655557899999999999999885 56778999988 9999999965
Q ss_pred CeeeecCCCccccceeEEEEeecc
Q 011709 442 SCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 442 ~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
.++|++|+ ||+||||....
T Consensus 496 ~m~ASasD-----DgtIRIWg~~~ 514 (519)
T KOG0293|consen 496 EMFASASD-----DGTIRIWGPSD 514 (519)
T ss_pred HHhhccCC-----CCeEEEecCCc
Confidence 57778888 99999997653
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.8e-29 Score=240.79 Aligned_cols=211 Identities=22% Similarity=0.400 Sum_probs=185.1
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
.+...|.|+|..+.|+| ...++++|++|..|+||++.+. +++.++.||-+ -|..+.|++.-.+++|
T Consensus 45 ~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~r------------rclftL~GHlD-YVRt~~FHheyPWIlS 110 (1202)
T KOG0292|consen 45 DRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTR------------RCLFTLLGHLD-YVRTVFFHHEYPWILS 110 (1202)
T ss_pred hhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccc------------eehhhhccccc-eeEEeeccCCCceEEE
Confidence 34458999999999999 6679999999999999999988 78889999998 5999999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
+|.|.+|+||+..+. .++..+.||...|.|..|+|.. .+
T Consensus 111 ASDDQTIrIWNwqsr----------------------------------------~~iavltGHnHYVMcAqFhptE-Dl 149 (1202)
T KOG0292|consen 111 ASDDQTIRIWNWQSR----------------------------------------KCIAVLTGHNHYVMCAQFHPTE-DL 149 (1202)
T ss_pred ccCCCeEEEEeccCC----------------------------------------ceEEEEecCceEEEeeccCCcc-ce
Confidence 999999999998653 3458899999999999999987 58
Q ss_pred EEEEecCCeEEEEeCCCCCC---------------------------CceeeeccCCCCeEEEEecCCCCcEEEEEeCCC
Q 011709 294 FCSVGDDSCLILWDARVGTS---------------------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 346 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg 346 (479)
++|+|-|.+||+||+..-+. .+...+.+|...|+-++|+| .-.+|++|++|+
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDR 228 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDR 228 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcc
Confidence 99999999999999863211 12345679999999999999 889999999999
Q ss_pred cEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 347 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
.|++|.+.... .-.+-++.+|.+.|+++-|+|... ++.|.|.|++|+|||+.+.
T Consensus 229 qVKlWrmnetK----aWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 229 QVKLWRMNETK----AWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred eeeEEEecccc----ceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccc
Confidence 99999998743 345677899999999999999888 5679999999999999883
No 54
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.9e-29 Score=228.58 Aligned_cols=288 Identities=16% Similarity=0.196 Sum_probs=211.2
Q ss_pred CCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC
Q 011709 128 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 207 (479)
Q Consensus 128 ~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~ 207 (479)
.|.-..+++-+|+..|.++++.| .|..|++|+.|.+|++||+....... +....+.......|.++.|++.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~--------~~fr~l~P~E~h~i~sl~ys~T 225 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASM--------RSFRQLQPCETHQINSLQYSVT 225 (641)
T ss_pred CCccceEeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccc--------hhhhccCcccccccceeeecCC
Confidence 34455678888999999999999 88899999999999999999874322 1122233323335889999999
Q ss_pred CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 208 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
|..|++.+....++|+|-.......... +. .-..-+..-+||...+++.+|+
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~K--------GD--------------------QYI~Dm~nTKGHia~lt~g~wh 277 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFSK--------GD--------------------QYIRDMYNTKGHIAELTCGCWH 277 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeeec--------cc--------------------hhhhhhhccCCceeeeeccccc
Confidence 9988888878899999976432110000 00 0011124557899999999999
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCCceeeec-----cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCC
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-----AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG 362 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~ 362 (479)
|.....|++++.||++|+||+...+.+ ..++. +..-.+++++|+| ++.+||+|+.||.|.+||.+.... .
T Consensus 278 P~~k~~FlT~s~DgtlRiWdv~~~k~q-~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v---~ 352 (641)
T KOG0772|consen 278 PDNKEEFLTCSYDGTLRIWDVNNTKSQ-LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV---R 352 (641)
T ss_pred cCcccceEEecCCCcEEEEecCCchhh-eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc---c
Confidence 999899999999999999999876532 22221 3345789999999 999999999999999999876442 1
Q ss_pred CceeeecCCCC--cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecC
Q 011709 363 SPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLR 440 (479)
Q Consensus 363 ~~~~~~~~h~~--~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~ 440 (479)
.....-.+|.. .|+||.|+++|++ |+|-|.|+++++|||+...+++....... -..+-+.++|||+
T Consensus 353 p~~~vk~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~kkpL~~~tgL~-----------t~~~~tdc~FSPd 420 (641)
T KOG0772|consen 353 PVMKVKDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFKKPLNVRTGLP-----------TPFPGTDCCFSPD 420 (641)
T ss_pred cceEeeeccCCCCceeEEEeccccch-hhhccCCCceeeeeccccccchhhhcCCC-----------ccCCCCccccCCC
Confidence 22334467877 8999999999996 66999999999999999765543322111 1123589999999
Q ss_pred CCeeeecCCCc-cccceeEEEEeecccccc
Q 011709 441 ESCLVDNNHGL-SYANKKIKIYCHLEALKS 469 (479)
Q Consensus 441 ~~~l~~~~~~~-~~~d~~i~i~~~~~~~~~ 469 (479)
.+.|++|..-. +-..|.+..|+.+.+-..
T Consensus 421 ~kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 421 DKLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred ceEEEecccccCCCCCceEEEEeccceeeE
Confidence 99999986532 444678888877765443
No 55
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=2.2e-28 Score=222.43 Aligned_cols=262 Identities=18% Similarity=0.312 Sum_probs=212.5
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
...-+|..+++-.+|+| .+.++|+|...|+|||||....+ ......+..-.+ .|..|+|+.++++++.
T Consensus 53 ~iYtEH~~~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~----------hiLKnef~v~aG-~I~Di~Wd~ds~RI~a 120 (603)
T KOG0318|consen 53 DIYTEHAHQVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKE----------HILKNEFQVLAG-PIKDISWDFDSKRIAA 120 (603)
T ss_pred eeeccccceeEEEEeCC-CceEEeecCCcCcEEEEeccCcc----------eeeeeeeeeccc-ccccceeCCCCcEEEE
Confidence 34457889999999999 78899999999999999988641 122334444454 6899999999998887
Q ss_pred ecCC----CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC
Q 011709 214 GGKD----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (479)
Q Consensus 214 ~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (479)
.+.. |.+.+||.-+ .+..+.||...|+++.|-|.
T Consensus 121 vGEGrerfg~~F~~DSG~------------------------------------------SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 121 VGEGRERFGHVFLWDSGN------------------------------------------SVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred EecCccceeEEEEecCCC------------------------------------------ccceeeccceeEeeeeccCC
Confidence 7643 4677777542 23568899999999999999
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec
Q 011709 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
-+..+++|++|++|.+|+=.-.+ ....+..|..-|+|+.|+| +|.++++.+.||+|.+||=.+ ++.+..+.
T Consensus 159 RPfRi~T~sdDn~v~ffeGPPFK--Fk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGkt------ge~vg~l~ 229 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGPPFK--FKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKT------GEKVGELE 229 (603)
T ss_pred CceEEEeccCCCeEEEeeCCCee--eeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCC------ccEEEEec
Confidence 99999999999999999865444 4556678999999999999 999999999999999999998 78888887
Q ss_pred ---CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCC------------------------------CC
Q 011709 370 ---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR------------------------------TT 416 (479)
Q Consensus 370 ---~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~------------------------------~~ 416 (479)
+|.+.|.+++|+||+.+ |+|+|.|.+++|||+.... ...+... ..
T Consensus 230 ~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~s-lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~ 307 (603)
T KOG0318|consen 230 DSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNS-LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNP 307 (603)
T ss_pred CCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccc-eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecc
Confidence 99999999999999996 6799999999999998842 2111110 01
Q ss_pred CCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 417 NYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 417 ~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
.. +..+.+..||.. |+++..+|++.+|++++. ||.|.-|+....
T Consensus 308 ~d-~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy-----DG~I~~W~~~~g 352 (603)
T KOG0318|consen 308 SD-PSVLKVISGHNKSITALTVSPDGKTIYSGSY-----DGHINSWDSGSG 352 (603)
T ss_pred cC-CChhheecccccceeEEEEcCCCCEEEeecc-----CceEEEEecCCc
Confidence 11 235667788876 999999999999999999 999999976554
No 56
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=4.4e-28 Score=235.61 Aligned_cols=214 Identities=18% Similarity=0.329 Sum_probs=169.6
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC-CcEEEe
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSG 214 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~-~~l~s~ 214 (479)
..+|.+.|++++|+|.++++||+|+.||+|+|||+.+..... ....++..+.+|.. .|.+++|+|++ ++|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-----~~~~~l~~L~gH~~-~V~~l~f~P~~~~iLaSg 144 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-----NISDPIVHLQGHTK-KVGIVSFHPSAMNVLASA 144 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-----ccCcceEEecCCCC-cEEEEEeCcCCCCEEEEE
Confidence 468999999999999778899999999999999998652111 11245678899987 58999999985 689999
Q ss_pred cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEE
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (479)
+.|++|++||+.++.. +..+.+|...|.+++|+|++ .+|
T Consensus 145 s~DgtVrIWDl~tg~~----------------------------------------~~~l~~h~~~V~sla~spdG-~lL 183 (493)
T PTZ00421 145 GADMVVNVWDVERGKA----------------------------------------VEVIKCHSDQITSLEWNLDG-SLL 183 (493)
T ss_pred eCCCEEEEEECCCCeE----------------------------------------EEEEcCCCCceEEEEEECCC-CEE
Confidence 9999999999975322 25677899999999999998 789
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeeccCCCC-eEEEEecCCCCcEEEEEe----CCCcEEEEecCCCCCCCCCCceeeec
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDAD-LHCVDWNPLDDNLILTGS----ADNSVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~l~~sp~~~~~l~tgs----~dg~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
++++.|+.|++||+++++ .+..+.+|.+. +..+.|.+ ++..|++++ .|+.|++||++... .++....
T Consensus 184 atgs~Dg~IrIwD~rsg~--~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~-----~p~~~~~ 255 (493)
T PTZ00421 184 CTTSKDKKLNIIDPRDGT--IVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMA-----SPYSTVD 255 (493)
T ss_pred EEecCCCEEEEEECCCCc--EEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCC-----CceeEec
Confidence 999999999999999987 56677788764 45788998 666666554 47999999999743 3555444
Q ss_pred CC-CCcEEEEEEecCCCcEEEEEe-CCCCEEEEeCCCC
Q 011709 370 GH-SAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKV 405 (479)
Q Consensus 370 ~h-~~~v~~l~~~p~~~~llas~s-~Dg~v~iwd~~~~ 405 (479)
.+ ...+....|++++.. |++++ .|+.|++||+..+
T Consensus 256 ~d~~~~~~~~~~d~d~~~-L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 256 LDQSSALFIPFFDEDTNL-LYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred cCCCCceEEEEEcCCCCE-EEEEEeCCCeEEEEEeeCC
Confidence 33 345666789999985 45555 5999999999874
No 57
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=5.1e-28 Score=236.09 Aligned_cols=234 Identities=18% Similarity=0.251 Sum_probs=177.5
Q ss_pred EEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC-CCcEEEecCCCcEEEEecCCCccccccCC
Q 011709 158 THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDP 236 (479)
Q Consensus 158 t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 236 (479)
.|+.++.|++|+.... .+...+.+|.+ .|.+++|+|+ +.+|++|+.||+|++||+.+......
T Consensus 49 gGG~~gvI~L~~~~r~------------~~v~~L~gH~~-~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--- 112 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK------------PPVIKLKGHTS-SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--- 112 (568)
T ss_pred CCCceeEEEeeecCCC------------ceEEEEcCCCC-CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc---
Confidence 3667889999998765 45678899997 5999999997 78999999999999999975321000
Q ss_pred cccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCce
Q 011709 237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 316 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 316 (479)
....++..+.+|...|.+++|+|++..++++++.|++|++||++++. ..
T Consensus 113 -----------------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~ 161 (568)
T PTZ00420 113 -----------------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RA 161 (568)
T ss_pred -----------------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EE
Confidence 00123356788999999999999986677899999999999999887 44
Q ss_pred eeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEE-----EEecCCCcEEEEE
Q 011709 317 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV-----QWSPDKSSVFGSS 391 (479)
Q Consensus 317 ~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l-----~~~p~~~~llas~ 391 (479)
..+ .|...|.+++|+| ++.+|++++.|+.|+|||+++ +..+.++.+|.+.+.+. .|++++.++ +++
T Consensus 162 ~~i-~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs------g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~I-lTt 232 (568)
T PTZ00420 162 FQI-NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK------QEIASSFHIHDGGKNTKNIWIDGLGGDDNYI-LST 232 (568)
T ss_pred EEE-ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC------CcEEEEEecccCCceeEEEEeeeEcCCCCEE-EEE
Confidence 444 3667899999999 999999999999999999998 77888999998865443 345788864 566
Q ss_pred eCC----CCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEec-CCCeeeecCCCccccceeEEEEeec
Q 011709 392 AED----GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVL-RESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 392 s~D----g~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp-~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
|.| +.|+|||++..+. +...+.+..+..+....|.+ ++.++++|.. |+.|++|+..
T Consensus 233 G~d~~~~R~VkLWDlr~~~~------------pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG-----D~tIr~~e~~ 293 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNTTS------------ALVTMSIDNASAPLIPHYDESTGLIYLIGKG-----DGNCRYYQHS 293 (568)
T ss_pred EcCCCCccEEEEEECCCCCC------------ceEEEEecCCccceEEeeeCCCCCEEEEEEC-----CCeEEEEEcc
Confidence 655 3799999996422 12233444444444445555 4667777766 9999999864
No 58
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-29 Score=225.12 Aligned_cols=246 Identities=18% Similarity=0.340 Sum_probs=203.1
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg 218 (479)
....|.+++|+|..+.-+|+.+.- .+.||+..+.. ....+.-..+ .|++++|..||++|+.|+..|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~~~------------~~k~~srFk~-~v~s~~fR~DG~LlaaGD~sG 90 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVTRS------------VRKTFSRFKD-VVYSVDFRSDGRLLAAGDESG 90 (487)
T ss_pred ccCcceeEecCCCCCCceEEeccc-EEEEEecchhh------------hhhhHHhhcc-ceeEEEeecCCeEEEccCCcC
Confidence 346899999999888878777654 79999988762 2222333333 589999999999999999999
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (479)
.|+|+|+.+. ..++.+.+|+.+|..+.|+|++..+|++|+
T Consensus 91 ~V~vfD~k~r----------------------------------------~iLR~~~ah~apv~~~~f~~~d~t~l~s~s 130 (487)
T KOG0310|consen 91 HVKVFDMKSR----------------------------------------VILRQLYAHQAPVHVTKFSPQDNTMLVSGS 130 (487)
T ss_pred cEEEeccccH----------------------------------------HHHHHHhhccCceeEEEecccCCeEEEecC
Confidence 9999996531 123678889999999999999989999999
Q ss_pred cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEE
Q 011709 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 378 (479)
+|+.+++||+.+.. ....+.+|+..|.|.+|+|..+.+++|||.||.|++||+|... ..+.++. |..+|..+
T Consensus 131 Dd~v~k~~d~s~a~--v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-----~~v~eln-hg~pVe~v 202 (487)
T KOG0310|consen 131 DDKVVKYWDLSTAY--VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-----SRVVELN-HGCPVESV 202 (487)
T ss_pred CCceEEEEEcCCcE--EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-----ceeEEec-CCCceeeE
Confidence 99999999999988 5657789999999999999778899999999999999999842 5666666 89999999
Q ss_pred EEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeE
Q 011709 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKI 458 (479)
Q Consensus 379 ~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i 458 (479)
.+-|.|. ++|+++ ...|+|||+..+++.... .+ ..|..|+|+++..++.+|++++- |+.+
T Consensus 203 l~lpsgs-~iasAg-Gn~vkVWDl~~G~qll~~-----------~~--~H~KtVTcL~l~s~~~rLlS~sL-----D~~V 262 (487)
T KOG0310|consen 203 LALPSGS-LIASAG-GNSVKVWDLTTGGQLLTS-----------MF--NHNKTVTCLRLASDSTRLLSGSL-----DRHV 262 (487)
T ss_pred EEcCCCC-EEEEcC-CCeEEEEEecCCceehhh-----------hh--cccceEEEEEeecCCceEeeccc-----ccce
Confidence 9999988 577887 557999999986543321 11 24567999999999999999999 9999
Q ss_pred EEEeeccc
Q 011709 459 KIYCHLEA 466 (479)
Q Consensus 459 ~i~~~~~~ 466 (479)
++|+...+
T Consensus 263 KVfd~t~~ 270 (487)
T KOG0310|consen 263 KVFDTTNY 270 (487)
T ss_pred EEEEccce
Confidence 99994443
No 59
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-28 Score=228.15 Aligned_cols=242 Identities=19% Similarity=0.399 Sum_probs=207.3
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEec-cCCCceeeeeecCCCCcEEEecCCC
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG-HQDNAEFALAMCPTEPYVLSGGKDK 218 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~v~~l~~s~~~~~l~s~s~dg 218 (479)
.+.|+++.|++ ++.+||+|..+|.|.|||..+. +....+.+ |.. .|-+++|+ +..+.+|+.|+
T Consensus 217 ~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~------------k~~~~~~~~h~~-rvg~laW~--~~~lssGsr~~ 280 (484)
T KOG0305|consen 217 EELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQ------------KKTRTLRGSHAS-RVGSLAWN--SSVLSSGSRDG 280 (484)
T ss_pred CCceEEEEECC-CCCEEEEeecCCeEEEEehhhc------------cccccccCCcCc-eeEEEecc--CceEEEecCCC
Confidence 68899999999 8999999999999999999887 55556777 665 68999998 56799999999
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (479)
.|..+|++..... ...+.+|...|..++|++++ .++++|+
T Consensus 281 ~I~~~dvR~~~~~---------------------------------------~~~~~~H~qeVCgLkws~d~-~~lASGg 320 (484)
T KOG0305|consen 281 KILNHDVRISQHV---------------------------------------VSTLQGHRQEVCGLKWSPDG-NQLASGG 320 (484)
T ss_pred cEEEEEEecchhh---------------------------------------hhhhhcccceeeeeEECCCC-CeeccCC
Confidence 9999999854331 12377899999999999999 7999999
Q ss_pred cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC--CCcEEEEecCCCCCCCCCCceeeecCCCCcEE
Q 011709 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA--DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 376 (479)
.|+.+.|||..... ....+..|...|.+++|+|....+||+|+. |+.|++||..+ +..+..+. -...|.
T Consensus 321 nDN~~~Iwd~~~~~--p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~------g~~i~~vd-tgsQVc 391 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPE--PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT------GARIDSVD-TGSQVC 391 (484)
T ss_pred CccceEeccCCCcc--ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC------CcEecccc-cCCcee
Confidence 99999999996666 566777999999999999999999999775 89999999998 77887776 457899
Q ss_pred EEEEecCCCcEEEEEeC-CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCcccc
Q 011709 377 CVQWSPDKSSVFGSSAE-DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYA 454 (479)
Q Consensus 377 ~l~~~p~~~~llas~s~-Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~ 454 (479)
+|.|++..+-++.+.|. +..|.||++.+. .++-...||.. |..++++|||..+++++.
T Consensus 392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---------------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~----- 451 (484)
T KOG0305|consen 392 SLIWSKKYKELLSTHGYSENQITLWKYPSM---------------KLVAELLGHTSRVLYLALSPDGETIVTGAA----- 451 (484)
T ss_pred eEEEcCCCCEEEEecCCCCCcEEEEecccc---------------ceeeeecCCcceeEEEEECCCCCEEEEecc-----
Confidence 99999998766656554 789999999873 34557788988 999999999999999999
Q ss_pred ceeEEEEeeccc
Q 011709 455 NKKIKIYCHLEA 466 (479)
Q Consensus 455 d~~i~i~~~~~~ 466 (479)
|.++++|.....
T Consensus 452 DETlrfw~~f~~ 463 (484)
T KOG0305|consen 452 DETLRFWNLFDE 463 (484)
T ss_pred cCcEEeccccCC
Confidence 999999987665
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=202.13 Aligned_cols=250 Identities=19% Similarity=0.249 Sum_probs=201.6
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
+...-+|..+|..++.+. +...+|+|+.|..|.+||+.++ +....+.+|.. .|+.+.|+.+...++
T Consensus 52 iktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TG------------kv~Rr~rgH~a-qVNtV~fNeesSVv~ 117 (307)
T KOG0316|consen 52 IKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNTG------------KVDRRFRGHLA-QVNTVRFNEESSVVA 117 (307)
T ss_pred eeeecCCCceeeeccccc-cccccccCCCCceEEEEEcccC------------eeeeecccccc-eeeEEEecCcceEEE
Confidence 444568999999999888 6678999999999999999999 78889999997 499999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+|+.|.++++||.++ ...+|++++......|.++.... .
T Consensus 118 SgsfD~s~r~wDCRS--------------------------------------~s~ePiQildea~D~V~Si~v~~---h 156 (307)
T KOG0316|consen 118 SGSFDSSVRLWDCRS--------------------------------------RSFEPIQILDEAKDGVSSIDVAE---H 156 (307)
T ss_pred eccccceeEEEEccc--------------------------------------CCCCccchhhhhcCceeEEEecc---c
Confidence 999999999999975 34456678888888999999864 5
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
.+++|+.||+++.||+|.+. +..- --..+|+|++|++ +++..++++.|+++++.|-.+ ++.+..+.+|.
T Consensus 157 eIvaGS~DGtvRtydiR~G~--l~sD--y~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~t------GklL~sYkGhk 225 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGT--LSSD--YFGHPITSVSFSK-DGNCSLASSLDSTLRLLDKET------GKLLKSYKGHK 225 (307)
T ss_pred EEEeeccCCcEEEEEeecce--eehh--hcCCcceeEEecC-CCCEEEEeeccceeeecccch------hHHHHHhcccc
Confidence 69999999999999999998 3333 3456899999999 999999999999999999998 89999999998
Q ss_pred CcEEE--EEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCC
Q 011709 373 AAVLC--VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 373 ~~v~~--l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~ 450 (479)
..-.. ++++....+ +++||.||.|.+||+..... ...+.+.+...++++.++|.-..++++..
T Consensus 226 n~eykldc~l~qsdth-V~sgSEDG~Vy~wdLvd~~~-------------~sk~~~~~~v~v~dl~~hp~~~~f~~A~~- 290 (307)
T KOG0316|consen 226 NMEYKLDCCLNQSDTH-VFSGSEDGKVYFWDLVDETQ-------------ISKLSVVSTVIVTDLSCHPTMDDFITATG- 290 (307)
T ss_pred cceeeeeeeeccccee-EEeccCCceEEEEEecccee-------------eeeeccCCceeEEeeecccCccceeEecC-
Confidence 75544 456666664 67999999999999987311 11223333233789999998776666554
Q ss_pred ccccceeEEEEeeccccc
Q 011709 451 LSYANKKIKIYCHLEALK 468 (479)
Q Consensus 451 ~~~~d~~i~i~~~~~~~~ 468 (479)
+.+..|....+..
T Consensus 291 -----~~~~~~~~~~y~~ 303 (307)
T KOG0316|consen 291 -----HGDLFWYQENYVD 303 (307)
T ss_pred -----Cceeceeehhhhh
Confidence 2566665554433
No 61
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.8e-29 Score=204.97 Aligned_cols=258 Identities=19% Similarity=0.264 Sum_probs=202.6
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC--CCCcEEEec
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGG 215 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~--~~~~l~s~s 215 (479)
.|.+.|..+...= .+..||||+.|++|+|+.+.... ..+++..|.||.+ +|..++|.. .|.+||||+
T Consensus 9 ~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~---------~s~ll~~L~Gh~G-PVwqv~wahPk~G~iLAScs 77 (299)
T KOG1332|consen 9 QHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNG---------QSKLLAELTGHSG-PVWKVAWAHPKFGTILASCS 77 (299)
T ss_pred hhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCC---------CceeeeEecCCCC-CeeEEeecccccCcEeeEee
Confidence 5777777765443 78899999999999999998762 2367889999998 699999976 689999999
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC-CcEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEF 294 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l 294 (479)
.||.|.||.-.++.- ........|...|++++|.|.+ ..+|
T Consensus 78 YDgkVIiWke~~g~w--------------------------------------~k~~e~~~h~~SVNsV~wapheygl~L 119 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRW--------------------------------------TKAYEHAAHSASVNSVAWAPHEYGLLL 119 (299)
T ss_pred cCceEEEEecCCCch--------------------------------------hhhhhhhhhcccceeecccccccceEE
Confidence 999999998765421 1224566799999999999864 2578
Q ss_pred EEEecCCeEEEEeCCCC-CCCceeeeccCCCCeEEEEecCCC--C-----------cEEEEEeCCCcEEEEecCCCCCCC
Q 011709 295 CSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLD--D-----------NLILTGSADNSVRMFDRRNLTSNG 360 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~--~-----------~~l~tgs~dg~I~iwd~~~~~~~~ 360 (479)
++++.||.|.+.+.+.. .....+....|.-.|++++|.|.. | +.|++|+.|..|+||+..+..
T Consensus 120 acasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--- 196 (299)
T KOG1332|consen 120 ACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--- 196 (299)
T ss_pred EEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc---
Confidence 89999999999999876 333344556899999999999931 2 569999999999999998732
Q ss_pred CCCceeeecCCCCcEEEEEEecCC---CcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEE
Q 011709 361 VGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKF 437 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~l~~~p~~---~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~ 437 (479)
...-.++.+|.+.|..++|.|.- +..+||+|.||+|.||..+....+... .++ +.-...+..+.|
T Consensus 197 -w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~---------tll--~~f~~~~w~vSW 264 (299)
T KOG1332|consen 197 -WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKK---------TLL--EEFPDVVWRVSW 264 (299)
T ss_pred -hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccc---------ccc--ccCCcceEEEEE
Confidence 34556689999999999999974 336899999999999998753222211 111 112244789999
Q ss_pred ecCCCeeeecCCCccccceeEEEEeec
Q 011709 438 VLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 438 sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
|+.|..|+.++. |++|.+|...
T Consensus 265 S~sGn~LaVs~G-----dNkvtlwke~ 286 (299)
T KOG1332|consen 265 SLSGNILAVSGG-----DNKVTLWKEN 286 (299)
T ss_pred eccccEEEEecC-----CcEEEEEEeC
Confidence 999999999988 9999999644
No 62
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=3.5e-28 Score=217.82 Aligned_cols=227 Identities=22% Similarity=0.416 Sum_probs=194.5
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC-CcE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYV 211 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~-~~l 211 (479)
.+++.+|.++=..+.|+++..-.|++|+.|++|++||+....... ....+...+.+|.. .|..++|++.. ..|
T Consensus 170 dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~-----~~~~p~~~~~~h~~-~VeDV~~h~~h~~lF 243 (422)
T KOG0264|consen 170 DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED-----KVVDPKTIFSGHED-VVEDVAWHPLHEDLF 243 (422)
T ss_pred ceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC-----ccccceEEeecCCc-ceehhhccccchhhh
Confidence 568889999889999999988899999999999999998764321 12366778999997 69999999974 588
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
++++.|+.+.|||+++. . .++.....+|.+.|++++|+|.+.
T Consensus 244 ~sv~dd~~L~iwD~R~~-~-------------------------------------~~~~~~~~ah~~~vn~~~fnp~~~ 285 (422)
T KOG0264|consen 244 GSVGDDGKLMIWDTRSN-T-------------------------------------SKPSHSVKAHSAEVNCVAFNPFNE 285 (422)
T ss_pred eeecCCCeEEEEEcCCC-C-------------------------------------CCCcccccccCCceeEEEeCCCCC
Confidence 99999999999999853 1 112255678999999999999998
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCC--------CCCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN--------GVGS 363 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~--------~~~~ 363 (479)
.+||+|+.|++|++||+|+... .+..+.+|...|.+|.|+|.....||+++.|+.+.|||+...... +..+
T Consensus 286 ~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE 364 (422)
T KOG0264|consen 286 FILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE 364 (422)
T ss_pred ceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc
Confidence 9999999999999999999876 466778999999999999988999999999999999999864432 1234
Q ss_pred ceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 364 ~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++....||...|..+.|+|..+++++|.+.|+.+.||.+..
T Consensus 365 llF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 365 LLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred eeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 56777899999999999999999999999999999999874
No 63
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4e-28 Score=229.33 Aligned_cols=249 Identities=21% Similarity=0.364 Sum_probs=198.7
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEE
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~ 221 (479)
-+.+..|.| ..+++++|...|.+.|||+... ....+...|.+ +++.++.+||+..+++||.|.+|+
T Consensus 414 y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~------------~l~Eti~AHdg-aIWsi~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 414 YILASKFVP-GDRYIVLGTKNGELQVFDLASA------------SLVETIRAHDG-AIWSISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred cEEEEEecC-CCceEEEeccCCceEEEEeehh------------hhhhhhhcccc-ceeeeeecCCCCceEEecCCcEEE
Confidence 455666666 5556666666666666666655 44455678887 699999999999999999999999
Q ss_pred EEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC
Q 011709 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (479)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (479)
+||..-.... + +.....+ .....++++ -...|.++.++|++ .+++.+--|.
T Consensus 480 fWdf~l~~~~----~------gt~~k~l-----------------sl~~~rtLe-l~ddvL~v~~Spdg-k~LaVsLLdn 530 (888)
T KOG0306|consen 480 FWDFKLVVSV----P------GTQKKVL-----------------SLKHTRTLE-LEDDVLCVSVSPDG-KLLAVSLLDN 530 (888)
T ss_pred EEeEEEEecc----C------cccceee-----------------eeccceEEe-ccccEEEEEEcCCC-cEEEEEeccC
Confidence 9998521110 0 0000000 000002222 35679999999999 7999999999
Q ss_pred eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEe
Q 011709 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381 (479)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 381 (479)
+|++|-+.+.+ ..-.+.+|.-+|.|+..+| ++.+++|||.|++|+||-+.- |.+-..+.+|.+.|.++.|.
T Consensus 531 TVkVyflDtlK--FflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdF------GDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 531 TVKVYFLDTLK--FFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF------GDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred eEEEEEeccee--eeeeecccccceeEEeccC-CcCeEEeccCCCceEEecccc------chhhhhhhcccCceeEEEEc
Confidence 99999999988 5667789999999999999 999999999999999999998 88999999999999999999
Q ss_pred cCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEE
Q 011709 382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKI 460 (479)
Q Consensus 382 p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i 460 (479)
|... +|.++|.|+.|+-||-.+. +.+-...||.. +.+++.+|+|.++++++. |.+|++
T Consensus 602 P~~~-~FFt~gKD~kvKqWDg~kF---------------e~iq~L~~H~~ev~cLav~~~G~~vvs~sh-----D~sIRl 660 (888)
T KOG0306|consen 602 PKTH-LFFTCGKDGKVKQWDGEKF---------------EEIQKLDGHHSEVWCLAVSPNGSFVVSSSH-----DKSIRL 660 (888)
T ss_pred ccce-eEEEecCcceEEeechhhh---------------hhheeeccchheeeeeEEcCCCCeEEeccC-----CceeEe
Confidence 9765 6789999999999997764 44556778877 999999999999999999 999999
Q ss_pred Eee
Q 011709 461 YCH 463 (479)
Q Consensus 461 ~~~ 463 (479)
|..
T Consensus 661 wE~ 663 (888)
T KOG0306|consen 661 WER 663 (888)
T ss_pred eec
Confidence 953
No 64
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.9e-28 Score=239.12 Aligned_cols=310 Identities=20% Similarity=0.296 Sum_probs=230.9
Q ss_pred hhccccccceeeEEecCCcccCCCcceEEEEEEEeeCCC--CCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEE
Q 011709 58 LANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGS--VPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHK 135 (479)
Q Consensus 58 ~~~~~l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (479)
+.|+.. +.++++-+|+. .++ ++|+ .+..+.||+.+-... ..+. .++ .-+....+
T Consensus 9 v~H~~~--~IfSIdv~pdg--------~~~-----aTgGq~~d~~~~iW~~~~vl~---~~~~---~~~---~l~k~l~~ 64 (942)
T KOG0973|consen 9 VNHNEK--SIFSIDVHPDG--------VKF-----ATGGQVLDGGIVIWSQDPVLD---EKEE---KNE---NLPKHLCT 64 (942)
T ss_pred cccCCe--eEEEEEecCCc--------eeE-----ecCCccccccceeeccccccc---hhhh---hhc---ccchhhee
Confidence 344444 46777777763 222 2333 455666898763221 1110 111 11223567
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCcc------ccCCCCCCCCcEEEeccCCCceeeeeecCCCC
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH------AVLGATNSRPDLILTGHQDNAEFALAMCPTEP 209 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~ 209 (479)
...|.+.|+|++|+| |+.+||+||+|+.|.||......... .....+..+....+.+|.. .|..++|+|++.
T Consensus 65 m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-DVLDVNWSPDDS 142 (942)
T ss_pred eccccCceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-ccceeccCCCcc
Confidence 789999999999999 99999999999999999988411000 1122345567889999997 489999999999
Q ss_pred cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC
Q 011709 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (479)
Q Consensus 210 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (479)
+|++++.|++|.+||..+. ..+.++.+|...|-.+.|.|-
T Consensus 143 ~lvS~s~DnsViiwn~~tF----------------------------------------~~~~vl~~H~s~VKGvs~DP~ 182 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTF----------------------------------------ELLKVLRGHQSLVKGVSWDPI 182 (942)
T ss_pred EEEEecccceEEEEccccc----------------------------------------eeeeeeecccccccceEECCc
Confidence 9999999999999998643 334789999999999999999
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCCCceeeeccC------CCCeEEEEecCCCCcEEEEEeCC----CcEEEEecCCCCCC
Q 011709 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH------DADLHCVDWNPLDDNLILTGSAD----NSVRMFDRRNLTSN 359 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~l~~sp~~~~~l~tgs~d----g~I~iwd~~~~~~~ 359 (479)
| ++|++-++|++|++|++.+.. +.+....+ ...+..+.|+| +|.+|++...- .++.|.+..+
T Consensus 183 G-ky~ASqsdDrtikvwrt~dw~--i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~t---- 254 (942)
T KOG0973|consen 183 G-KYFASQSDDRTLKVWRTSDWG--IEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGT---- 254 (942)
T ss_pred c-CeeeeecCCceEEEEEcccce--eeEeeccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCC----
Confidence 9 799999999999999977654 44444333 34578999999 99999987652 3688888776
Q ss_pred CCCCceeeecCCCCcEEEEEEecC--------C-------Cc-EEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeE
Q 011709 360 GVGSPINKFEGHSAAVLCVQWSPD--------K-------SS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 423 (479)
Q Consensus 360 ~~~~~~~~~~~h~~~v~~l~~~p~--------~-------~~-llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 423 (479)
.+.-..+-||..++.+++|+|. | .| ++|+||.|++|.||..... ..++
T Consensus 255 --Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~--------------RPl~ 318 (942)
T KOG0973|consen 255 --WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP--------------RPLF 318 (942)
T ss_pred --ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC--------------Cchh
Confidence 5667788999999999999982 1 11 8899999999999998652 1122
Q ss_pred EEeC-CCCCceeEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 424 FQHA-GHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 424 ~~~~-gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
..|. -..+|.+++|+|||..|++.+. ||+|.+..
T Consensus 319 vi~~lf~~SI~DmsWspdG~~LfacS~-----DGtV~~i~ 353 (942)
T KOG0973|consen 319 VIHNLFNKSIVDMSWSPDGFSLFACSL-----DGTVALIH 353 (942)
T ss_pred hhhhhhcCceeeeeEcCCCCeEEEEec-----CCeEEEEE
Confidence 2222 2245899999999999999999 99999884
No 65
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-28 Score=209.94 Aligned_cols=284 Identities=18% Similarity=0.315 Sum_probs=216.4
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
...+|.+.|..++... ...++.+++.|.+.+||.++++ .++..+.||.++ |+++.|++.+.+++++
T Consensus 143 e~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg------------~CL~~Y~GH~GS-VNsikfh~s~~L~lTa 208 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESG------------ACLATYTGHTGS-VNSIKFHNSGLLLLTA 208 (481)
T ss_pred hhcccccceeeehhhc-CCcceeecccccceeEEeeccc------------cceeeecccccc-eeeEEeccccceEEEc
Confidence 3468999999999877 5559999999999999999999 888899999985 8999999999999999
Q ss_pred cCCCcEEEEecCCCccccccCCcccccCCCCCceeec--CCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ--SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+.|++..||...-.-....... ....++....-.. .....++....-...-..|+..+.+|...|.+..|-..+ .
T Consensus 209 SGD~taHIW~~av~~~vP~~~a--~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~ 285 (481)
T KOG0300|consen 209 SGDETAHIWKAAVNWEVPSNNA--PSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-Q 285 (481)
T ss_pred cCCcchHHHHHhhcCcCCCCCC--CCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-c
Confidence 9999999998432111000000 0000000000000 000011111111112234667889999999999998887 6
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
.+++++.|.+..+||+.++. ++..+.+|....+.++-+| ..+++++.+.|.+.++||.|.. -..+..|++|.
T Consensus 286 Q~vTaSWDRTAnlwDVEtge--~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea-----I~sV~VFQGHt 357 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGE--VVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA-----IQSVAVFQGHT 357 (481)
T ss_pred eeeeeeccccceeeeeccCc--eeccccCcchhccccccCC-cceEEEEeccCceeEeccchhh-----cceeeeecccc
Confidence 79999999999999999999 8899999999999999999 9999999999999999999953 36788999999
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCcc
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLS 452 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~ 452 (479)
..|+++.|.-+.+ +++|++|.+|+|||+++...++. ...-..++..++.+..+..++.-.+
T Consensus 358 dtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplA--------------TIRtdS~~NRvavs~g~~iIAiPhD--- 418 (481)
T KOG0300|consen 358 DTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLA--------------TIRTDSPANRVAVSKGHPIIAIPHD--- 418 (481)
T ss_pred cceeEEEEecCCc--eeecCCCceEEEeeeccccCcce--------------eeecCCccceeEeecCCceEEeccC---
Confidence 9999999999887 46999999999999998643332 2223355778888877777777777
Q ss_pred ccceeEEEEeec
Q 011709 453 YANKKIKIYCHL 464 (479)
Q Consensus 453 ~~d~~i~i~~~~ 464 (479)
+..|++|+..
T Consensus 419 --NRqvRlfDln 428 (481)
T KOG0300|consen 419 --NRQVRLFDLN 428 (481)
T ss_pred --CceEEEEecC
Confidence 8899999743
No 66
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=4.8e-29 Score=208.43 Aligned_cols=297 Identities=13% Similarity=0.157 Sum_probs=222.0
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
+.+.+|..+++.|+|+. ++++|.+|+.|.++.||-...+ ..+-++.||++ .|+|++.+.+.++|++
T Consensus 4 i~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nG------------erlGty~GHtG-avW~~Did~~s~~liT 69 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNG------------ERLGTYDGHTG-AVWCCDIDWDSKHLIT 69 (327)
T ss_pred cccccCccccceEEecC-CCcEEEEecCCCCceEEEecCC------------ceeeeecCCCc-eEEEEEecCCcceeee
Confidence 44568999999999999 9999999999999999988777 56778999998 5999999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCccc---ccCCCCCceeecCCC---CCCCCCCCCCC-------CCCCCceeecCCCCc
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATA---KSAGSSGSIIKQSPK---PGDGNDKAADG-------PSVGPRGIYNGHEDT 280 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~h~~~ 280 (479)
|+.|.++++||+.+++.......... ......+.++..... ...+.+.+++. ....|...+..+...
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk 149 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK 149 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc
Confidence 99999999999999877554433222 122222222222211 11222222222 245567777788899
Q ss_pred eEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 011709 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~ 360 (479)
++.+.|.|.+ .++++|.+||.|.+||++++.. .+.....|...|+.+.++| +..+++||+.|.+-++||.++
T Consensus 150 it~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~t----- 221 (327)
T KOG0643|consen 150 ITSALWGPLG-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRT----- 221 (327)
T ss_pred eeeeeecccC-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccC-CcceEEecccCccceeeeccc-----
Confidence 9999999999 6899999999999999999863 5666678999999999999 999999999999999999998
Q ss_pred CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCC-EEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEe
Q 011709 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFV 438 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~-v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~s 438 (479)
...+.++. -..+|++.+++|...+++..|+.+.. |.-=+.+.+.-+...... .-.+-+-...||.. +.+++|+
T Consensus 222 -l~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~---i~eEEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 222 -LEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHL---IFEEEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred -eeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHH---HHHHHhccccccccCcceeEEC
Confidence 56677776 46799999999998887766665432 222222221000000000 00122335678876 9999999
Q ss_pred cCCCeeeecCCCccccceeEEEEe
Q 011709 439 LRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 439 p~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
|+|...++||. ||-|++.-
T Consensus 297 PdGksYsSGGE-----DG~VR~h~ 315 (327)
T KOG0643|consen 297 PDGKSYSSGGE-----DGYVRLHH 315 (327)
T ss_pred CCCcccccCCC-----CceEEEEE
Confidence 99999999999 99999874
No 67
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-29 Score=238.99 Aligned_cols=242 Identities=21% Similarity=0.427 Sum_probs=197.8
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC-CcEEEecCCCcE
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSV 220 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~-~~l~s~s~dg~i 220 (479)
.+..|.|.....++|||++..|.|.+||+.... ..+.+..+..|+.. +++++|++.. .+|+|||.||+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~---------rnk~l~~f~EH~Rs-~~~ldfh~tep~iliSGSQDg~v 158 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI---------RNKLLTVFNEHERS-ANKLDFHSTEPNILISGSQDGTV 158 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc---------cchhhhHhhhhccc-eeeeeeccCCccEEEecCCCceE
Confidence 466788987788999999999999999998741 22556678899974 8999999975 489999999999
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecC
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (479)
++||++..... .++.+....|.+|+|+|..++.|+++.+.
T Consensus 159 K~~DlR~~~S~----------------------------------------~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 159 KCWDLRSKKSK----------------------------------------STFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred EEEeeeccccc----------------------------------------ccccccchhhhceeeccCCCceEEEecCC
Confidence 99999864432 34555677899999999888999999999
Q ss_pred CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEE
Q 011709 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 380 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 380 (479)
|.+++||+|.... +...+.+|.++|.|+.|+| ++.+|||||.|+.|+|||+.... ..++.++. -..+|.+|+|
T Consensus 199 G~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~----~~~~~tIn-Tiapv~rVkW 271 (839)
T KOG0269|consen 199 GYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSR----AKPKHTIN-TIAPVGRVKW 271 (839)
T ss_pred ceEEEeeccCchh-HHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCC----ccceeEEe-ecceeeeeee
Confidence 9999999999874 5666779999999999999 99999999999999999998643 34555554 3568999999
Q ss_pred ecCCCcEEEEEeC--CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEec-CCCeeeecCCCccccce
Q 011709 381 SPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVL-RESCLVDNNHGLSYANK 456 (479)
Q Consensus 381 ~p~~~~llas~s~--Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp-~~~~l~~~~~~~~~~d~ 456 (479)
-|..++.||+++. |-.|+|||++.+ ..|. .+...|++ ++.++|.. |..++.+.+. ||
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRP------------YIP~--~t~~eH~~~vt~i~W~~~d~~~l~s~sK-----D~ 332 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRP------------YIPY--ATFLEHTDSVTGIAWDSGDRINLWSCSK-----DG 332 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccc------------cccc--eeeeccCccccceeccCCCceeeEeecC-----cc
Confidence 9999999999886 889999999985 2222 24456777 67888865 5567778877 66
Q ss_pred eEE
Q 011709 457 KIK 459 (479)
Q Consensus 457 ~i~ 459 (479)
.|.
T Consensus 333 tv~ 335 (839)
T KOG0269|consen 333 TVL 335 (839)
T ss_pred HHH
Confidence 654
No 68
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.1e-26 Score=226.77 Aligned_cols=216 Identities=17% Similarity=0.245 Sum_probs=163.1
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCc-E
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-V 211 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~-l 211 (479)
.....+|.+.|.+++|+|.++.+||+|+.||+|+|||+.+...... ....+...+.+|.. .|.+++|+|++.. |
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~----~i~~p~~~L~gH~~-~V~sVaf~P~g~~iL 141 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----EIKDPQCILKGHKK-KISIIDWNPMNYYIM 141 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc----ccccceEEeecCCC-cEEEEEECCCCCeEE
Confidence 4455689999999999997688999999999999999986421100 00134557889987 5999999999875 5
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
++++.|++|++||++++... ..+. |...|.+++|+|+|
T Consensus 142 aSgS~DgtIrIWDl~tg~~~----------------------------------------~~i~-~~~~V~SlswspdG- 179 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKRA----------------------------------------FQIN-MPKKLSSLKWNIKG- 179 (568)
T ss_pred EEEeCCCeEEEEECCCCcEE----------------------------------------EEEe-cCCcEEEEEECCCC-
Confidence 78999999999999754321 2232 45679999999999
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEE-----EecCCCCcEEEEEeCCC----cEEEEecCCCCCCCCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV-----DWNPLDDNLILTGSADN----SVRMFDRRNLTSNGVG 362 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l-----~~sp~~~~~l~tgs~dg----~I~iwd~~~~~~~~~~ 362 (479)
.+|++++.|+.|++||++++. .+..+.+|.+.+.+. .|++ ++.+|++++.|+ .|+|||++.. .
T Consensus 180 ~lLat~s~D~~IrIwD~Rsg~--~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~-----~ 251 (568)
T PTZ00420 180 NLLSGTCVGKHMHIIDPRKQE--IASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNT-----T 251 (568)
T ss_pred CEEEEEecCCEEEEEECCCCc--EEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCC-----C
Confidence 688999999999999999987 667778898765433 3457 788888888774 7999999964 3
Q ss_pred CceeeecC--CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 363 SPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 363 ~~~~~~~~--h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.++..+.. +.+.+... |.++...+|++|+.|+.|++|++..
T Consensus 252 ~pl~~~~ld~~~~~L~p~-~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 252 SALVTMSIDNASAPLIPH-YDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CceEEEEecCCccceEEe-eeCCCCCEEEEEECCCeEEEEEccC
Confidence 56655433 33333333 4454444788999999999999976
No 69
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.1e-28 Score=208.68 Aligned_cols=278 Identities=18% Similarity=0.276 Sum_probs=210.8
Q ss_pred eeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccc----cCC--CCCCCCcEEEeccCCCceeeeeec
Q 011709 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA----VLG--ATNSRPDLILTGHQDNAEFALAMC 205 (479)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~----~~~--~~~~~~~~~~~~h~~~~v~~l~~s 205 (479)
+..-.-.|.+++.+.+|+| +|.++|||+.|..|+|.|++....+.. ..+ ......+.++..|.+ .|+++.|+
T Consensus 104 Et~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d-evn~l~FH 181 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD-EVNDLDFH 181 (430)
T ss_pred ceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-cccceeec
Confidence 3556678999999999999 999999999999999999985422211 111 111245678889997 59999999
Q ss_pred CCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEE
Q 011709 206 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (479)
Q Consensus 206 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (479)
|....|++|+.|++|++||+........+ +.++ ...+|.++.
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~-------------------------------------K~~q-d~~~vrsiS 223 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAF-------------------------------------KVFQ-DTEPVRSIS 223 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHH-------------------------------------HHhh-ccceeeeEe
Confidence 99999999999999999999753222111 1222 356899999
Q ss_pred EeeCCCcEEEEEecCCeEEEEeCCCCCCCce-eeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCc
Q 011709 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVI-KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 364 (479)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~ 364 (479)
|+|.| .+++.|.+-.++++||+.+.++-+- .....|.+.|+++.+++ .+++.+||+.||.|+|||--+ +++
T Consensus 224 fHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS------~rC 295 (430)
T KOG0640|consen 224 FHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVS------NRC 295 (430)
T ss_pred ecCCC-ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeecccc------HHH
Confidence 99999 6899999999999999999773111 12347999999999999 999999999999999999877 788
Q ss_pred eeeec-CCCC-cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCC-----------------------C-
Q 011709 365 INKFE-GHSA-AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN-----------------------Y- 418 (479)
Q Consensus 365 ~~~~~-~h~~-~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~-----------------------~- 418 (479)
+.++. +|.+ .|.+..|..+++++| +.|.|..|++|.+.++...+........ .
T Consensus 296 v~t~~~AH~gsevcSa~Ftkn~kyiL-sSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas 374 (430)
T KOG0640|consen 296 VRTIGNAHGGSEVCSAVFTKNGKYIL-SSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS 374 (430)
T ss_pred HHHHHhhcCCceeeeEEEccCCeEEe-ecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc
Confidence 88874 5654 789999999999865 8889999999999986433222111000 0
Q ss_pred ----------CCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 419 ----------PAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 419 ----------~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
...+..-.-||.+ +..+.-||.+.-++++++ |-.++.|-.
T Consensus 375 ~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd-----D~raRFWyr 425 (430)
T KOG0640|consen 375 NSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD-----DFRARFWYR 425 (430)
T ss_pred CceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecc-----cceeeeeee
Confidence 0011222346666 677888899999999999 889998843
No 70
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.1e-27 Score=197.01 Aligned_cols=272 Identities=18% Similarity=0.276 Sum_probs=218.4
Q ss_pred eCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCC
Q 011709 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA 172 (479)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~ 172 (479)
++|+.+.+..||+++... +.+.....+|.+.|-.+.|+|.+++++|+++.|.+|++||+..
T Consensus 36 asgs~dktv~v~n~e~~r-------------------~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 36 ASGSFDKTVSVWNLERDR-------------------FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred eecccCCceEEEEecchh-------------------hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 567788999999987531 1113334589999999999999999999999999999999998
Q ss_pred CCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecC
Q 011709 173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 252 (479)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (479)
+ ++........++ .-+.|+|+|++++.++.|..|...|.++.....
T Consensus 97 ~------------k~~~~i~~~~en--i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~-------------------- 142 (313)
T KOG1407|consen 97 G------------KCTARIETKGEN--INITWSPDGEYIAVGNKDDRITFIDARTYKIVN-------------------- 142 (313)
T ss_pred C------------cEEEEeeccCcc--eEEEEcCCCCEEEEecCcccEEEEEecccceee--------------------
Confidence 8 555555554443 479999999999999999999999997643211
Q ss_pred CCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEec
Q 011709 253 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 332 (479)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 332 (479)
-......++.+.|+.++ .+|+.....|+|.|.....-+ .+..+.+|+....||.|+
T Consensus 143 ---------------------~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLk--pv~si~AH~snCicI~f~ 198 (313)
T KOG1407|consen 143 ---------------------EEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLK--PVQSIKAHPSNCICIEFD 198 (313)
T ss_pred ---------------------hhcccceeeeeeecCCC-CEEEEecCCceEEEEeccccc--cccccccCCcceEEEEEC
Confidence 11234568889999777 566666777999999988766 678889999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCC
Q 011709 333 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 412 (479)
Q Consensus 333 p~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~ 412 (479)
| +|+|||+|+.|..+.+||+.. .-++..+..+.-+|..+.|+-+|+ +||+||.|..|-|=+++++
T Consensus 199 p-~GryfA~GsADAlvSLWD~~E------LiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetG------- 263 (313)
T KOG1407|consen 199 P-DGRYFATGSADALVSLWDVDE------LICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETG------- 263 (313)
T ss_pred C-CCceEeeccccceeeccChhH------hhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccC-------
Confidence 9 999999999999999999998 578888999999999999999999 5899999999999999885
Q ss_pred CCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCc----cccceeEEEEeec
Q 011709 413 PRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGL----SYANKKIKIYCHL 464 (479)
Q Consensus 413 ~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~----~~~d~~i~i~~~~ 464 (479)
..++....-.+-.+++|+|....|+-+.++. ....|.+++|...
T Consensus 264 --------d~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 264 --------DRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred --------CeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 2344444445578999999999998877642 2334677777543
No 71
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1.7e-28 Score=221.04 Aligned_cols=226 Identities=23% Similarity=0.380 Sum_probs=187.1
Q ss_pred eCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCC
Q 011709 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA 172 (479)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~ 172 (479)
.+++.+..++||++--.. -......+|..+|..++|+. ++..+.++|.|+.|++||+++
T Consensus 231 LS~gmD~~vklW~vy~~~--------------------~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 231 LSGGMDGLVKLWNVYDDR--------------------RCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred EecCCCceEEEEEEecCc--------------------ceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeecccc
Confidence 366789999999864211 01344569999999999999 888999999999999999999
Q ss_pred CCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC-CcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeec
Q 011709 173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ 251 (479)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
+ ++. ...|.+..++|+.|.|++ +.+++|+.|+.|+.||++++..
T Consensus 290 G------------~~~--~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv--------------------- 334 (503)
T KOG0282|consen 290 G------------QVL--SRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV--------------------- 334 (503)
T ss_pred c------------eEE--EEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH---------------------
Confidence 9 333 344555678999999998 7899999999999999986543
Q ss_pred CCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCC------------Cce---
Q 011709 252 SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS------------PVI--- 316 (479)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------------~~~--- 316 (479)
++.+..|-+.|+++.|-+.+ ..|++.++|++++||+.+.+.. |++
T Consensus 335 -------------------vqeYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~ 394 (503)
T KOG0282|consen 335 -------------------VQEYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH 394 (503)
T ss_pred -------------------HHHHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecC
Confidence 36677799999999999999 6899999999999999886531 110
Q ss_pred -----------------------------eeeccCC--CCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCce
Q 011709 317 -----------------------------KVEKAHD--ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 365 (479)
Q Consensus 317 -----------------------------~~~~~~~--~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~ 365 (479)
..+.+|. +.-..+.||| ||.+|++|+.||.+.+||.++ .+.+
T Consensus 395 P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwkt------~kl~ 467 (503)
T KOG0282|consen 395 PNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWKT------TKLV 467 (503)
T ss_pred CCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeechh------hhhh
Confidence 1122343 3445789999 999999999999999999999 6889
Q ss_pred eeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEe
Q 011709 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 366 ~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd 401 (479)
..+++|..++..+.|+|.....+|+++.||.|++||
T Consensus 468 ~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 468 SKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999888899999999999997
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.2e-27 Score=209.37 Aligned_cols=254 Identities=19% Similarity=0.345 Sum_probs=205.7
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC---
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--- 209 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~--- 209 (479)
...-+.|.+.|.++.-. +..|.||+.||.++|||... +....+.||.+ ++.+++|.....
T Consensus 98 pl~~~~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~G-------------k~~~~~~Ght~-~ik~v~~v~~n~~~~ 160 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGA---SKWILTGSYDGTSRIWDLKG-------------KSIKTIVGHTG-PIKSVAWVIKNSSSC 160 (423)
T ss_pred ccccccchhhhhhhccc---CceEEEeecCCeeEEEecCC-------------ceEEEEecCCc-ceeeeEEEecCCccc
Confidence 45667899999998764 56999999999999999865 46778999997 588888865443
Q ss_pred cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC
Q 011709 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (479)
Q Consensus 210 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (479)
.|++++.|.++++|.++.+.... .......||...|.++...++
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~------------------------------------~~~~~~~GHk~~V~sVsv~~s 204 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKV------------------------------------KALKVCRGHKRSVDSVSVDSS 204 (423)
T ss_pred eEEEecCCceEEEEEecCchhhh------------------------------------hHHhHhcccccceeEEEecCC
Confidence 59999999999999987643321 112334589999999999999
Q ss_pred CCcEEEEEecCCeEEEEeCCCCC-----------------------CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC
Q 011709 290 SAQEFCSVGDDSCLILWDARVGT-----------------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 346 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg 346 (479)
+ ..|++|+.|..|.||+..+.. ...+..+.+|..+|.++.|++ ...+++++.|-
T Consensus 205 g-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDH 281 (423)
T KOG0313|consen 205 G-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDH 281 (423)
T ss_pred C-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccc
Confidence 9 789999999999999932110 123556779999999999996 67899999999
Q ss_pred cEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEe
Q 011709 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 426 (479)
Q Consensus 347 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (479)
+|+.||+.. +..+.++.+ ...++++..+|... +||+|+.|..+++||.++++ -.-..+..
T Consensus 282 TIk~WDlet------g~~~~~~~~-~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~------------gs~v~~s~ 341 (423)
T KOG0313|consen 282 TIKVWDLET------GGLKSTLTT-NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGD------------GSVVSQSL 341 (423)
T ss_pred eEEEEEeec------ccceeeeec-CcceeEeecccccc-eeeecCCCCceeecCCCCCC------------CceeEEee
Confidence 999999998 777777764 46799999999877 78999999999999999852 22446788
Q ss_pred CCCCC-ceeEEEecCCCe-eeecCCCccccceeEEEEeecccc
Q 011709 427 AGHSP-SSSIKFVLRESC-LVDNNHGLSYANKKIKIYCHLEAL 467 (479)
Q Consensus 427 ~gh~~-~~~~~~sp~~~~-l~~~~~~~~~~d~~i~i~~~~~~~ 467 (479)
.||.. |.++.|+|...+ |++++. ||.+++|++..--
T Consensus 342 ~gH~nwVssvkwsp~~~~~~~S~S~-----D~t~klWDvRS~k 379 (423)
T KOG0313|consen 342 IGHKNWVSSVKWSPTNEFQLVSGSY-----DNTVKLWDVRSTK 379 (423)
T ss_pred ecchhhhhheecCCCCceEEEEEec-----CCeEEEEEeccCC
Confidence 89999 999999997654 666666 9999999877543
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.3e-27 Score=230.79 Aligned_cols=238 Identities=20% Similarity=0.352 Sum_probs=201.5
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
...+|.+.|.++.+.. .+.+|++|+.|.+++|||+.++ .+...+.+|.. .|.++... ...+++|
T Consensus 244 ~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg------------~C~~~l~gh~s-tv~~~~~~--~~~~~sg 307 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTG------------ECTHSLQGHTS-SVRCLTID--PFLLVSG 307 (537)
T ss_pred eccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCC------------cEEEEecCCCc-eEEEEEcc--CceEeec
Confidence 3789999999999876 7889999999999999999998 78889999997 57777765 4468889
Q ss_pred cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEE
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (479)
+.|.+|++|++.++. .+..+.+|...|+++..+ + .++
T Consensus 308 s~D~tVkVW~v~n~~----------------------------------------~l~l~~~h~~~V~~v~~~--~-~~l 344 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNGA----------------------------------------CLNLLRGHTGPVNCVQLD--E-PLL 344 (537)
T ss_pred cCCceEEEEeccCcc----------------------------------------eEEEeccccccEEEEEec--C-CEE
Confidence 999999999997433 346777799999999997 4 689
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCC-CceeeecCCCC
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG-SPINKFEGHSA 373 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~-~~~~~~~~h~~ 373 (479)
++|+.|++|++||+++++ ++..+.+|...|.++.+.+ . .++++|+.|++|++||+++ . +++.++.+|..
T Consensus 345 vsgs~d~~v~VW~~~~~~--cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~------~~~c~~tl~~h~~ 414 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTGK--CLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRT------KRKCIHTLQGHTS 414 (537)
T ss_pred EEEecCceEEEEEhhhce--eeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCc------hhhhhhhhcCCcc
Confidence 999999999999999888 8999999999999999865 3 9999999999999999999 6 79999999999
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC-C-CCceeEEEecCCCeeeecCCCc
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-H-SPSSSIKFVLRESCLVDNNHGL 451 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g-h-~~~~~~~~sp~~~~l~~~~~~~ 451 (479)
-|..+.+. +. +|++++.|++|++||...+ +.+.+..+ | ..+..+++. ...+++++.
T Consensus 415 ~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~~---------------~~~~~~~~~~~~~v~~l~~~--~~~il~s~~-- 472 (537)
T KOG0274|consen 415 LVSSLLLR--DN-FLVSSSADGTIKLWDAEEG---------------ECLRTLEGRHVGGVSALALG--KEEILCSSD-- 472 (537)
T ss_pred cccccccc--cc-eeEeccccccEEEeecccC---------------ceeeeeccCCcccEEEeecC--cceEEEEec--
Confidence 99888764 34 5779999999999999885 33334444 3 447777776 567888888
Q ss_pred cccceeEEEEeeccc
Q 011709 452 SYANKKIKIYCHLEA 466 (479)
Q Consensus 452 ~~~d~~i~i~~~~~~ 466 (479)
++++++|+....
T Consensus 473 ---~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 473 ---DGSVKLWDLRSG 484 (537)
T ss_pred ---CCeeEEEecccC
Confidence 899999976544
No 74
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.4e-28 Score=215.27 Aligned_cols=286 Identities=19% Similarity=0.280 Sum_probs=213.4
Q ss_pred hhhhccccccce--eeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceee
Q 011709 56 DWLANHNLVWPS--LSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKK 133 (479)
Q Consensus 56 ~~~~~~~l~wps--l~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (479)
+++.+|.+--|+ ||++|+.. .......-.-+-+|| .+..|.||++++..+.++...--+......+....+.
T Consensus 163 nlYvHHD~ilpafPLC~ewld~-~~~~~~~gNyvAiGt-----mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~ 236 (463)
T KOG0270|consen 163 NLYVHHDFILPAFPLCIEWLDH-GSKSGGAGNYVAIGT-----MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRS 236 (463)
T ss_pred ceeEecceeccCcchhhhhhhc-CCCCCCCcceEEEec-----cCceeEEeccccccccccceeechhhhhhhhhhcccc
Confidence 456677777776 69999987 222221112344455 6679999999886654432111000000000000122
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC-CCcEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVL 212 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~-~~~l~ 212 (479)
...-+|++.|..+.|+....++||+||.|.+|++||+.++ ++..++..|.+ .|.+++|+|. ..+|+
T Consensus 237 ~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g------------~p~~s~~~~~k-~Vq~l~wh~~~p~~LL 303 (463)
T KOG0270|consen 237 NSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG------------KPKSSITHHGK-KVQTLEWHPYEPSVLL 303 (463)
T ss_pred cccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC------------CcceehhhcCC-ceeEEEecCCCceEEE
Confidence 3345799999999999988899999999999999999999 77778887776 5999999997 45899
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+|+.|++|.+.|++..... ...-...+.|..++|.|..+.
T Consensus 304 sGs~D~~V~l~D~R~~~~s----------------------------------------~~~wk~~g~VEkv~w~~~se~ 343 (463)
T KOG0270|consen 304 SGSYDGTVALKDCRDPSNS----------------------------------------GKEWKFDGEVEKVAWDPHSEN 343 (463)
T ss_pred eccccceEEeeeccCcccc----------------------------------------CceEEeccceEEEEecCCCce
Confidence 9999999999999852110 011113567999999999989
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
.|+++.+||+|+-+|+|.... ++..+..|.++|.+|++++...++++|++.|+.|++|++.... .+.+......-
T Consensus 344 ~f~~~tddG~v~~~D~R~~~~-~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~----~~~v~~~~~~~ 418 (463)
T KOG0270|consen 344 SFFVSTDDGTVYYFDIRNPGK-PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS----PKSVKEHSFKL 418 (463)
T ss_pred eEEEecCCceEEeeecCCCCC-ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC----Ccccccccccc
Confidence 999999999999999999864 6788889999999999999889999999999999999998743 22333222223
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+...|.++.|+-..+||.||..+.++|||+...
T Consensus 419 ~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 419 GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred cceeecccCCCcceEEEecCccceEEEeecccC
Confidence 457788999999889999999999999999874
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=214.12 Aligned_cols=240 Identities=21% Similarity=0.287 Sum_probs=200.4
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecCC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKD 217 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~d 217 (479)
....|.++.|-. ||.+||+|...|.|+|||+.+. ..+..+.+|+. +|..+.|+|.++ .|++|+.|
T Consensus 67 Fk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r------------~iLR~~~ah~a-pv~~~~f~~~d~t~l~s~sDd 132 (487)
T KOG0310|consen 67 FKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSR------------VILRQLYAHQA-PVHVTKFSPQDNTMLVSGSDD 132 (487)
T ss_pred hccceeEEEeec-CCeEEEccCCcCcEEEeccccH------------HHHHHHhhccC-ceeEEEecccCCeEEEecCCC
Confidence 346789999988 9999999999999999996553 45667889997 689999999755 78899999
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
+.+++||+.+... ...+.+|+..|.+.+|+|..+.+++||
T Consensus 133 ~v~k~~d~s~a~v----------------------------------------~~~l~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 133 KVVKYWDLSTAYV----------------------------------------QAELSGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred ceEEEEEcCCcEE----------------------------------------EEEecCCcceeEeeccccCCCeEEEec
Confidence 9999999975331 256789999999999999988899999
Q ss_pred ecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEE
Q 011709 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 377 (479)
+.||.|++||+|.... .+..+ .|..+|.++.+-| .|.+|++++. ..|+|||+-.. ++.+..+..|...|+|
T Consensus 173 sYDg~vrl~DtR~~~~-~v~el-nhg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G-----~qll~~~~~H~KtVTc 243 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLTS-RVVEL-NHGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTG-----GQLLTSMFNHNKTVTC 243 (487)
T ss_pred CCCceEEEEEeccCCc-eeEEe-cCCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCC-----ceehhhhhcccceEEE
Confidence 9999999999999852 34443 7999999999999 8899998874 58999999863 4556666669999999
Q ss_pred EEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCcccccee
Q 011709 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKK 457 (479)
Q Consensus 378 l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~ 457 (479)
+++..++.. |.|+|-|+.|++||+.+. .+++...=..++.+++.+|+++.++.|.. +|.
T Consensus 244 L~l~s~~~r-LlS~sLD~~VKVfd~t~~---------------Kvv~s~~~~~pvLsiavs~dd~t~viGms-----nGl 302 (487)
T KOG0310|consen 244 LRLASDSTR-LLSGSLDRHVKVFDTTNY---------------KVVHSWKYPGPVLSIAVSPDDQTVVIGMS-----NGL 302 (487)
T ss_pred EEeecCCce-EeecccccceEEEEccce---------------EEEEeeecccceeeEEecCCCceEEEecc-----cce
Confidence 999999986 559999999999997763 45555555567999999999999999988 777
Q ss_pred EEEEe
Q 011709 458 IKIYC 462 (479)
Q Consensus 458 i~i~~ 462 (479)
+-+..
T Consensus 303 v~~rr 307 (487)
T KOG0310|consen 303 VSIRR 307 (487)
T ss_pred eeeeh
Confidence 76663
No 76
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.5e-27 Score=213.99 Aligned_cols=289 Identities=16% Similarity=0.242 Sum_probs=208.2
Q ss_pred eCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCC
Q 011709 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA 172 (479)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~ 172 (479)
.+|+-++++..|........+.. |. .++ -.-...|++++|++ .+..|++.+....++|+|-..
T Consensus 183 ~sGs~Dy~v~~wDf~gMdas~~~------fr---------~l~-P~E~h~i~sl~ys~-Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 183 VSGSLDYTVKFWDFQGMDASMRS------FR---------QLQ-PCETHQINSLQYSV-TGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred eeccccceEEEEecccccccchh------hh---------ccC-cccccccceeeecC-CCCeEEEEecCcceeEEccCC
Confidence 47789999999987654322111 11 111 01234699999999 666776777777999999876
Q ss_pred CCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeec
Q 011709 173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ 251 (479)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
........+......+..-+||.. .++|-+|+|..+ .+++++.||++|+||++........ +.
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia-~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV--------------ik- 309 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIA-ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV--------------IK- 309 (641)
T ss_pred ceeeeeeccchhhhhhhccCCcee-eeeccccccCcccceEEecCCCcEEEEecCCchhheeE--------------Ee-
Confidence 544333333333344556689997 589999999854 8999999999999999864321100 00
Q ss_pred CCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCC-CCceeeeccCCC--CeEE
Q 011709 252 SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDA--DLHC 328 (479)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~--~v~~ 328 (479)
+ ....+..-.++.++|++++ ..||+|..||.|.+||.+... .+....-.+|.. .|+|
T Consensus 310 ------------------~-k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Its 369 (641)
T KOG0772|consen 310 ------------------T-KPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITS 369 (641)
T ss_pred ------------------e-ccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeE
Confidence 0 1112344578999999999 679999999999999987644 344555668887 9999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC--cEEEEEEecCCCcEEEEEeC------CCCEEEE
Q 011709 329 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAE------DGLLNIW 400 (479)
Q Consensus 329 l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~llas~s~------Dg~v~iw 400 (479)
|+||+ +|++|++-+.|+++++||+|++. +++.+..+-.. +-+.++|+|+.+ |+++|.. .|.+.+|
T Consensus 370 i~FS~-dg~~LlSRg~D~tLKvWDLrq~k-----kpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~ 442 (641)
T KOG0772|consen 370 ISFSY-DGNYLLSRGFDDTLKVWDLRQFK-----KPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFF 442 (641)
T ss_pred EEecc-ccchhhhccCCCceeeeeccccc-----cchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEE
Confidence 99999 99999999999999999999974 67776655332 457899999998 5668764 4679999
Q ss_pred eCCCCCccccCCCCCCCCCCeeEEEeCC-CCCceeEEEecCCCeeeecCCCccccceeEEEE
Q 011709 401 DYEKVGKKVEQGPRTTNYPAGLFFQHAG-HSPSSSIKFVLRESCLVDNNHGLSYANKKIKIY 461 (479)
Q Consensus 401 d~~~~~~~~~~~~~~~~~~~~l~~~~~g-h~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~ 461 (479)
|..+. +.+....- ...|..+.|+|.-..|++++. ||.+++|
T Consensus 443 d~~t~---------------d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg-----dG~~~vy 484 (641)
T KOG0772|consen 443 DRMTL---------------DTVYKIDISTASVVRCLWHPKLNQIFAGSG-----DGTAHVY 484 (641)
T ss_pred eccce---------------eeEEEecCCCceEEEEeecchhhheeeecC-----CCceEEE
Confidence 97764 22222222 233899999999888888888 8999888
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=6.5e-27 Score=208.11 Aligned_cols=233 Identities=18% Similarity=0.336 Sum_probs=195.7
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
..+.++...|. ...++||+.|.++.++|..+. +.+..+.||+. .|+.+.++|+...+++++.|..|
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~------------q~l~~~~Gh~k-ki~~v~~~~~~~~v~~aSad~~i 285 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSN------------QILATLKGHTK-KITSVKFHKDLDTVITASADEII 285 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecchh------------hhhhhccCcce-EEEEEEeccchhheeecCCcceE
Confidence 45778887774 678999999999999999987 77889999997 58999999999999999999999
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecC
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (479)
+||....... ......|..+|+.+..+|.| .+|++++.|
T Consensus 286 ~vws~~~~s~----------------------------------------~~~~~~h~~~V~~ls~h~tg-eYllsAs~d 324 (506)
T KOG0289|consen 286 RVWSVPLSSE----------------------------------------PTSSRPHEEPVTGLSLHPTG-EYLLSASND 324 (506)
T ss_pred EeeccccccC----------------------------------------ccccccccccceeeeeccCC-cEEEEecCC
Confidence 9998854322 14556799999999999999 689999999
Q ss_pred CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEE
Q 011709 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 380 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 380 (479)
|+..+.|++++..-.+..-....-.+++.+|+| ||.+|++|..||.|+|||+.+ ...+..|.+|+++|..++|
T Consensus 325 ~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks------~~~~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 325 GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS------QTNVAKFPGHTGPVKAISF 397 (506)
T ss_pred ceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCC------ccccccCCCCCCceeEEEe
Confidence 999999999998322222222345689999999 999999999999999999998 6788899999999999999
Q ss_pred ecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 381 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 381 ~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
+.+|-+ ||+++.|+.|++||+++...-. .|.......+.++.|.+.|.+|+.+|.
T Consensus 398 sENGY~-Lat~add~~V~lwDLRKl~n~k-------------t~~l~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 398 SENGYW-LATAADDGSVKLWDLRKLKNFK-------------TIQLDEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred ccCceE-EEEEecCCeEEEEEehhhcccc-------------eeeccccccceeEEEcCCCCeEEeecc
Confidence 998875 7899999999999999853111 223333346899999999999999988
No 78
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.6e-27 Score=204.53 Aligned_cols=254 Identities=13% Similarity=0.210 Sum_probs=207.8
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s 215 (479)
.++...-+-|.+|+| ++++|++|+.||.|.+||+.++..++...- +..-.+.-+.+ +|.|++|+.|...|++|+
T Consensus 209 KFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkY----QAqd~fMMmd~-aVlci~FSRDsEMlAsGs 282 (508)
T KOG0275|consen 209 KFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKY----QAQDNFMMMDD-AVLCISFSRDSEMLASGS 282 (508)
T ss_pred ecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhh----hhhcceeeccc-ceEEEeecccHHHhhccC
Confidence 456777899999999 999999999999999999999865543211 22223444555 699999999999999999
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec-CCCCceEEEEEeeCCCcEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l 294 (479)
.||.|++|.+.++.+. +.+. .|+..|+++.|+.++ ..+
T Consensus 283 qDGkIKvWri~tG~Cl----------------------------------------RrFdrAHtkGvt~l~FSrD~-Sqi 321 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCL----------------------------------------RRFDRAHTKGVTCLSFSRDN-SQI 321 (508)
T ss_pred cCCcEEEEEEecchHH----------------------------------------HHhhhhhccCeeEEEEccCc-chh
Confidence 9999999999877654 3333 699999999999999 568
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC--CC
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--HS 372 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~--h~ 372 (479)
++++.|.++++.-+.+++ ++..+.+|.+.|+...|.+ +|..+++++.||+|++|+..+ ..++.+++. ..
T Consensus 322 LS~sfD~tvRiHGlKSGK--~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~Kt------teC~~Tfk~~~~d 392 (508)
T KOG0275|consen 322 LSASFDQTVRIHGLKSGK--CLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKT------TECLSTFKPLGTD 392 (508)
T ss_pred hcccccceEEEeccccch--hHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcc------hhhhhhccCCCCc
Confidence 999999999999999999 7888999999999999999 999999999999999999998 778888764 44
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC--CceeEEEecCCCeeeecCCC
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS--PSSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~--~~~~~~~sp~~~~l~~~~~~ 450 (479)
-+|+++..-|.++--++.+....+|.|-++.. +.+. .|..+... +-.+++.+|.|.++.+.+.
T Consensus 393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--QvVr------------sfsSGkREgGdFi~~~lSpkGewiYcigE- 457 (508)
T KOG0275|consen 393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QVVR------------SFSSGKREGGDFINAILSPKGEWIYCIGE- 457 (508)
T ss_pred ccceeEEEcCCCCceEEEEcCCCeEEEEeccc--eEEe------------eeccCCccCCceEEEEecCCCcEEEEEcc-
Confidence 58999998898876788898899999999874 2111 12221111 2578899999999999999
Q ss_pred ccccceeEEEEeec
Q 011709 451 LSYANKKIKIYCHL 464 (479)
Q Consensus 451 ~~~~d~~i~i~~~~ 464 (479)
|+.++.|...
T Consensus 458 ----D~vlYCF~~~ 467 (508)
T KOG0275|consen 458 ----DGVLYCFSVL 467 (508)
T ss_pred ----CcEEEEEEee
Confidence 8888887543
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.2e-26 Score=194.09 Aligned_cols=244 Identities=15% Similarity=0.257 Sum_probs=193.7
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC--
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-- 216 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~-- 216 (479)
-.+.|+++.|++ +|.+|++++.|-+++|||..++ +...++..++- .+..+.|......++.++.
T Consensus 13 ~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g------------~~~~ti~skky-G~~~~~Fth~~~~~i~sStk~ 78 (311)
T KOG1446|consen 13 TNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSG------------KQVKTINSKKY-GVDLACFTHHSNTVIHSSTKE 78 (311)
T ss_pred CCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCC------------ceeeEeecccc-cccEEEEecCCceEEEccCCC
Confidence 367899999999 8889999999999999999988 55556665554 3678888777776776665
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
|.+|+..++.+.. .++.+.||...|++++.+|-+ ..|++
T Consensus 79 d~tIryLsl~dNk----------------------------------------ylRYF~GH~~~V~sL~~sP~~-d~FlS 117 (311)
T KOG1446|consen 79 DDTIRYLSLHDNK----------------------------------------YLRYFPGHKKRVNSLSVSPKD-DTFLS 117 (311)
T ss_pred CCceEEEEeecCc----------------------------------------eEEEcCCCCceEEEEEecCCC-CeEEe
Confidence 8899999987543 347889999999999999988 68999
Q ss_pred EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC---CCC
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSA 373 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~---h~~ 373 (479)
++.|++|++||+|..++ ...+.. ..-..++|+| .|-++|++.....|++||+|+.+ ..|..++.- ...
T Consensus 118 ~S~D~tvrLWDlR~~~c--qg~l~~--~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~d----kgPF~tf~i~~~~~~ 188 (311)
T KOG1446|consen 118 SSLDKTVRLWDLRVKKC--QGLLNL--SGRPIAAFDP-EGLIFALANGSELIKLYDLRSFD----KGPFTTFSITDNDEA 188 (311)
T ss_pred cccCCeEEeeEecCCCC--ceEEec--CCCcceeECC-CCcEEEEecCCCeEEEEEecccC----CCCceeEccCCCCcc
Confidence 99999999999998874 343322 2334589999 89999999988899999999986 355555543 366
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC----ceeEEEecCCCeeeecCC
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP----SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~----~~~~~~sp~~~~l~~~~~ 449 (479)
..+.|.|+|+|++|| .+...+.+.+.|.-.+ .+.....++.. ..+..|+||+++++++++
T Consensus 189 ew~~l~FS~dGK~iL-lsT~~s~~~~lDAf~G---------------~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSIL-LSTNASFIYLLDAFDG---------------TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD 252 (311)
T ss_pred ceeeeEEcCCCCEEE-EEeCCCcEEEEEccCC---------------cEeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence 899999999999876 5556888999998774 23333444433 358999999999999999
Q ss_pred CccccceeEEEEeecccc
Q 011709 450 GLSYANKKIKIYCHLEAL 467 (479)
Q Consensus 450 ~~~~~d~~i~i~~~~~~~ 467 (479)
||.|.+|+...-.
T Consensus 253 -----dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 253 -----DGTIHVWNLETGK 265 (311)
T ss_pred -----CCcEEEEEcCCCc
Confidence 9999999875443
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=205.54 Aligned_cols=247 Identities=16% Similarity=0.254 Sum_probs=196.1
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
..-+|.-.|+.+.|+| +...+++++.|..|+||..... ........|.. .|+.+..+|.|.||+++
T Consensus 256 ~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~------------s~~~~~~~h~~-~V~~ls~h~tgeYllsA 321 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLS------------SEPTSSRPHEE-PVTGLSLHPTGEYLLSA 321 (506)
T ss_pred hccCcceEEEEEEecc-chhheeecCCcceEEeeccccc------------cCccccccccc-cceeeeeccCCcEEEEe
Confidence 3458999999999999 7789999999999999999876 34556778886 69999999999999999
Q ss_pred cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEE
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (479)
+.||+..+.|++++...... .-+...-.+++.+||||| .+|
T Consensus 322 s~d~~w~Fsd~~~g~~lt~v--------------------------------------s~~~s~v~~ts~~fHpDg-Lif 362 (506)
T KOG0289|consen 322 SNDGTWAFSDISSGSQLTVV--------------------------------------SDETSDVEYTSAAFHPDG-LIF 362 (506)
T ss_pred cCCceEEEEEccCCcEEEEE--------------------------------------eeccccceeEEeeEcCCc-eEE
Confidence 99999999999865432110 001122358999999999 899
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC-C
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-A 373 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~ 373 (479)
.+|..||.|+|||+..+. .+..+.+|.++|.+++|+. +|.+|+++++|+.|++||+|.. +...++.-.. .
T Consensus 363 gtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl------~n~kt~~l~~~~ 433 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKL------KNFKTIQLDEKK 433 (506)
T ss_pred eccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhh------cccceeeccccc
Confidence 999999999999999988 6777889999999999999 9999999999999999999983 4444444322 3
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCcc
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLS 452 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~ 452 (479)
+|.++.|.+.|.+ |+.+|.|=+|++++-.+ ..+..+-....|.+ .+.+.|....+++++++.
T Consensus 434 ~v~s~~fD~SGt~-L~~~g~~l~Vy~~~k~~-------------k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm--- 496 (506)
T KOG0289|consen 434 EVNSLSFDQSGTY-LGIAGSDLQVYICKKKT-------------KSWTEIKELADHSGLSTGVRFGEHAQYLASTSM--- 496 (506)
T ss_pred cceeEEEcCCCCe-EEeecceeEEEEEeccc-------------ccceeeehhhhcccccceeeecccceEEeeccc---
Confidence 7999999999997 56777776666665333 12233334445554 688999999999999999
Q ss_pred ccceeEEEEe
Q 011709 453 YANKKIKIYC 462 (479)
Q Consensus 453 ~~d~~i~i~~ 462 (479)
|..+++|.
T Consensus 497 --d~~l~~~a 504 (506)
T KOG0289|consen 497 --DAILRLYA 504 (506)
T ss_pred --hhheEEee
Confidence 77777764
No 81
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=6.4e-26 Score=209.45 Aligned_cols=276 Identities=23% Similarity=0.421 Sum_probs=213.8
Q ss_pred cceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCcee
Q 011709 65 WPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVN 144 (479)
Q Consensus 65 wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 144 (479)
-|..++.|.|.- ..++.+. .++.+.+|+..... .......|...+.
T Consensus 10 ~~i~~~~~~~~~--------~~l~~~~-----~~g~i~i~~~~~~~---------------------~~~~~~~~~~~i~ 55 (289)
T cd00200 10 GGVTCVAFSPDG--------KLLATGS-----GDGTIKVWDLETGE---------------------LLRTLKGHTGPVR 55 (289)
T ss_pred CCEEEEEEcCCC--------CEEEEee-----cCcEEEEEEeeCCC---------------------cEEEEecCCccee
Confidence 477888998851 3343332 47788888765211 1344557888999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEe
Q 011709 145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS 224 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd 224 (479)
.+.|+| ++++|++++.||.|++||+.+. .....+..|.. .+.++.|++++.++++++.||.|.+||
T Consensus 56 ~~~~~~-~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~~ 121 (289)
T cd00200 56 DVAASA-DGTYLASGSSDKTIRLWDLETG------------ECVRTLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWD 121 (289)
T ss_pred EEEECC-CCCEEEEEcCCCeEEEEEcCcc------------cceEEEeccCC-cEEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 999999 6689999999999999999876 45566778875 589999999988888888899999999
Q ss_pred cCCCccccccCC----cccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecC
Q 011709 225 IQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (479)
Q Consensus 225 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (479)
+.+......... ............+... ..++.+.+|+......+..+..|...+.++.|+|++ ..+++++.|
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~ 198 (289)
T cd00200 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASS--SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSD 198 (289)
T ss_pred CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE--cCCCcEEEEEccccccceeEecCccccceEEECCCc-CEEEEecCC
Confidence 985543222211 0111111112222221 236678888888888888888999999999999998 578888889
Q ss_pred CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEE
Q 011709 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 380 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 380 (479)
|.|++||++.++ ....+..|...+.+++|+| ++.++++++.||.|++||++. +.++..+..|...|.+++|
T Consensus 199 ~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~------~~~~~~~~~~~~~i~~~~~ 269 (289)
T cd00200 199 GTIKLWDLSTGK--CLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRT------GECVQTLSGHTNSVTSLAW 269 (289)
T ss_pred CcEEEEECCCCc--eecchhhcCCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCC------ceeEEEccccCCcEEEEEE
Confidence 999999999877 5666668888999999999 788999888899999999997 6788888899999999999
Q ss_pred ecCCCcEEEEEeCCCCEEEEe
Q 011709 381 SPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 381 ~p~~~~llas~s~Dg~v~iwd 401 (479)
+|++. +|++++.||.|++|+
T Consensus 270 ~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 270 SPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred CCCCC-EEEEecCCCeEEecC
Confidence 99988 477999999999996
No 82
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.4e-27 Score=197.85 Aligned_cols=246 Identities=18% Similarity=0.311 Sum_probs=200.9
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
+-...+|.|+|....... +....|+++.|=+.+|||.-++. .+..+ .|.. .|.+++|+.|.++|+
T Consensus 52 igtfeghkgavw~~~l~~-na~~aasaaadftakvw~a~tgd------------elhsf-~hkh-ivk~~af~~ds~~ll 116 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDAVTGD------------ELHSF-EHKH-IVKAVAFSQDSNYLL 116 (334)
T ss_pred EEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhhhhhh------------hhhhh-hhhh-eeeeEEecccchhhh
Confidence 556779999999998877 77788999999999999998883 33333 3443 689999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+|+.++.+||||++.... +...+.+|++.|..+.|+... +
T Consensus 117 tgg~ekllrvfdln~p~A---------------------------------------pp~E~~ghtg~Ir~v~wc~eD-~ 156 (334)
T KOG0278|consen 117 TGGQEKLLRVFDLNRPKA---------------------------------------PPKEISGHTGGIRTVLWCHED-K 156 (334)
T ss_pred ccchHHHhhhhhccCCCC---------------------------------------CchhhcCCCCcceeEEEeccC-c
Confidence 999999999999985432 225678899999999999877 6
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
.++++++|++||+||.+++. .++.+ .-+.+|+++.+++ ++.+|.++ ..+.|.+||..+ -.++..++. .
T Consensus 157 ~iLSSadd~tVRLWD~rTgt--~v~sL-~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaks------f~~lKs~k~-P 224 (334)
T KOG0278|consen 157 CILSSADDKTVRLWDHRTGT--EVQSL-EFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKS------FGLLKSYKM-P 224 (334)
T ss_pred eEEeeccCCceEEEEeccCc--EEEEE-ecCCCCcceeecc-CCCEEEEe-cCceeEEecccc------ccceeeccC-c
Confidence 78888999999999999998 56655 4567899999999 88776665 467899999998 567777764 4
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCcc
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLS 452 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~ 452 (479)
..|.+..++|+.. +|+.|+.|..++.||..++ .+. -.+.-+.|.+|.+++|+|+|...++|+.
T Consensus 225 ~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tg-eEi------------~~~nkgh~gpVhcVrFSPdGE~yAsGSE--- 287 (334)
T KOG0278|consen 225 CNVESASLHPKKE-FFVAGGEDFKVYKFDYNTG-EEI------------GSYNKGHFGPVHCVRFSPDGELYASGSE--- 287 (334)
T ss_pred cccccccccCCCc-eEEecCcceEEEEEeccCC-cee------------eecccCCCCceEEEEECCCCceeeccCC---
Confidence 5789999999986 7889999999999999984 221 1232333445999999999999999999
Q ss_pred ccceeEEEEeec
Q 011709 453 YANKKIKIYCHL 464 (479)
Q Consensus 453 ~~d~~i~i~~~~ 464 (479)
||+|++|...
T Consensus 288 --DGTirlWQt~ 297 (334)
T KOG0278|consen 288 --DGTIRLWQTT 297 (334)
T ss_pred --CceEEEEEec
Confidence 9999999543
No 83
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.7e-26 Score=192.69 Aligned_cols=276 Identities=16% Similarity=0.299 Sum_probs=208.7
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCcEEEec
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSGG 215 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~l~s~s 215 (479)
+|.+-|+++.|.+ .|+.+|||+.|++|+|||..... ....+....+.|.++ |..+.|.+- |+.+|+|+
T Consensus 11 ~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s--------~~W~~Ts~Wrah~~S-i~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 11 GHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDS--------GTWSCTSSWRAHDGS-IWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred CCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCC--------CceEEeeeEEecCCc-EEEEEecCccccceEEEEe
Confidence 6888899999999 99999999999999999986552 234566678899985 789999764 88999999
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC-CcEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEF 294 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l 294 (479)
.|+++.||.-....... .......+.++......|+++.|.|.. +..+
T Consensus 81 ~Drtv~iWEE~~~~~~~-------------------------------~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLkl 129 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEA-------------------------------HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKL 129 (361)
T ss_pred cCCceeeeeeccccccc-------------------------------ccceeEEEEEeecCCcceeEEEecchhcceEE
Confidence 99999999764211100 001222346677788899999999963 2579
Q ss_pred EEEecCCeEEEEeCCCCC----CCceeeec-------cCCCCeEEEEecCC--CCcEEEEEeCC-----CcEEEEecCCC
Q 011709 295 CSVGDDSCLILWDARVGT----SPVIKVEK-------AHDADLHCVDWNPL--DDNLILTGSAD-----NSVRMFDRRNL 356 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~----~~~~~~~~-------~~~~~v~~l~~sp~--~~~~l~tgs~d-----g~I~iwd~~~~ 356 (479)
++++.||.||||+.-... .++...+. .+.....|+.|+|. ...+||.|+.+ +.+.||.....
T Consensus 130 A~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~ 209 (361)
T KOG2445|consen 130 AAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN 209 (361)
T ss_pred EEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC
Confidence 999999999999876543 22222222 46678899999982 25688888877 57889977652
Q ss_pred CCCCCCCceeeecCCCCcEEEEEEecCC---CcEEEEEeCCCCEEEEeCCCCCccccCCC-----CCCCCCCeeEEEeCC
Q 011709 357 TSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGP-----RTTNYPAGLFFQHAG 428 (479)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~llas~s~Dg~v~iwd~~~~~~~~~~~~-----~~~~~~~~l~~~~~g 428 (479)
. .....+.++.+|+.+|+.|+|.|+- -++||+++.|| |+||.+......+..++ .....+.+++-.+.+
T Consensus 210 ~--rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~ 286 (361)
T KOG2445|consen 210 G--RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD 286 (361)
T ss_pred c--ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC
Confidence 1 1134567788999999999999973 24899999999 99999986433332222 222355677778999
Q ss_pred CCC-ceeEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 429 HSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 429 h~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
|.. |-.+.|+-.|..|+++|+ ||.||+|.
T Consensus 287 H~~~VWrv~wNmtGtiLsStGd-----DG~VRLWk 316 (361)
T KOG2445|consen 287 HNGEVWRVRWNMTGTILSSTGD-----DGCVRLWK 316 (361)
T ss_pred CCCceEEEEEeeeeeEEeecCC-----Cceeeehh
Confidence 996 999999999999999999 99999994
No 84
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.2e-27 Score=208.84 Aligned_cols=266 Identities=19% Similarity=0.287 Sum_probs=203.2
Q ss_pred EeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEEC
Q 011709 91 EQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDV 170 (479)
Q Consensus 91 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~ 170 (479)
+..+|+.+..+++|+...-+. + .+..+-+-.+.|+++.|.+ ++..+.+++.|+.+++|++
T Consensus 189 tlatgg~Dr~Ik~W~v~~~k~-----~--------------~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVLGEKS-----E--------------LISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhcchhhhhhhhhcccchh-----h--------------hhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeec
Confidence 345677888888887643210 0 0223345568899999999 6667778889999999999
Q ss_pred CCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceee
Q 011709 171 EAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 250 (479)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (479)
... +...++.||++. |+++.|......+++|+.|.+|++||+....+....
T Consensus 249 d~~------------r~~~TLsGHtdk-Vt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~---------------- 299 (459)
T KOG0288|consen 249 DSL------------RLRHTLSGHTDK-VTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV---------------- 299 (459)
T ss_pred cch------------hhhhhhcccccc-eeeehhhccccceeeccccchhhhhhhhhhheeccc----------------
Confidence 988 777899999984 899999988777999999999999999864442211
Q ss_pred cCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEE
Q 011709 251 QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 330 (479)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 330 (479)
+ ....++++...+ ..+++|..|+.|++||+|+.. +......+ +.|+++.
T Consensus 300 -----------------------l--~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~--~~~sv~~g-g~vtSl~ 348 (459)
T KOG0288|consen 300 -----------------------L--PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSAD--KTRSVPLG-GRVTSLD 348 (459)
T ss_pred -----------------------c--ccccccceEecc---eeeeecccccceEEEeccCCc--eeeEeecC-cceeeEe
Confidence 1 134566676652 569999999999999999988 56665444 4899999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC----CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCC
Q 011709 331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH----SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 406 (479)
Q Consensus 331 ~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~ 406 (479)
.++ ++..|.+++.|.++.+.|+|+ ....+.+.+. ..-.+.+.|||++.| +|+||.||.|+||++.++.
T Consensus 349 ls~-~g~~lLsssRDdtl~viDlRt------~eI~~~~sA~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 349 LSM-DGLELLSSSRDDTLKVIDLRT------KEIRQTFSAEGFKCASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGK 420 (459)
T ss_pred ecc-CCeEEeeecCCCceeeeeccc------ccEEEEeeccccccccccceeEECCCCce-eeeccCCCcEEEEEccCce
Confidence 999 999999999999999999998 3444444321 224889999999997 6799999999999999852
Q ss_pred ccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEE
Q 011709 407 KKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIY 461 (479)
Q Consensus 407 ~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~ 461 (479)
.+. .+-....+..+++++|+|.|..|++++. ++.+.+|
T Consensus 421 lE~------------~l~~s~s~~aI~s~~W~~sG~~Llsadk-----~~~v~lW 458 (459)
T KOG0288|consen 421 LEK------------VLSLSTSNAAITSLSWNPSGSGLLSADK-----QKAVTLW 458 (459)
T ss_pred EEE------------EeccCCCCcceEEEEEcCCCchhhcccC-----CcceEec
Confidence 111 1111122225899999999999999999 8999888
No 85
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=205.61 Aligned_cols=261 Identities=20% Similarity=0.324 Sum_probs=197.5
Q ss_pred CCceeEEEecC------CCCcEEEEEeCCCcEEEEECCCCCCccc--cCCCC-------CCCCcEEEeccCCCceeeeee
Q 011709 140 PGEVNRIRELP------QNTKIVATHTDSPDVLIWDVEAQPNRHA--VLGAT-------NSRPDLILTGHQDNAEFALAM 204 (479)
Q Consensus 140 ~~~V~~l~~~p------~~~~~lat~s~dg~i~iwd~~~~~~~~~--~~~~~-------~~~~~~~~~~h~~~~v~~l~~ 204 (479)
+....|+.|.. ..++++|.|+.|..|.|||+.-...... .++.. ..+......+|++ +|..|+|
T Consensus 173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~ 251 (463)
T KOG0270|consen 173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSW 251 (463)
T ss_pred cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHh
Confidence 34446666653 2578999999999999999875432211 11100 0011223457887 5889999
Q ss_pred cCC-CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEE
Q 011709 205 CPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (479)
Q Consensus 205 s~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (479)
+.. .+.|||||.|.+|.+||+.++.+ ..++..|...|.+
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p----------------------------------------~~s~~~~~k~Vq~ 291 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKP----------------------------------------KSSITHHGKKVQT 291 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCc----------------------------------------ceehhhcCCceeE
Confidence 987 45899999999999999976544 3566679999999
Q ss_pred EEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCC
Q 011709 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 363 (479)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~ 363 (479)
+.|+|..+.+|++|+.|++|.+.|.|.... ....-.-.+.|-.++|+|+....++++..||+|+-+|+|+. ++
T Consensus 292 l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~--s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-----~~ 364 (463)
T KOG0270|consen 292 LEWHPYEPSVLLSGSYDGTVALKDCRDPSN--SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-----GK 364 (463)
T ss_pred EEecCCCceEEEeccccceEEeeeccCccc--cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC-----CC
Confidence 999999999999999999999999996442 22222346789999999988999999999999999999996 48
Q ss_pred ceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCC
Q 011709 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRES 442 (479)
Q Consensus 364 ~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~ 442 (479)
++.++++|.++|.+|++++.-+.+++++|.|+.|++|++... .+.....|.-... ..++++.|+-.
T Consensus 365 ~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~-------------~~~~v~~~~~~~~rl~c~~~~~~~a 431 (463)
T KOG0270|consen 365 PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD-------------SPKSVKEHSFKLGRLHCFALDPDVA 431 (463)
T ss_pred ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC-------------CCcccccccccccceeecccCCCcc
Confidence 999999999999999999999999999999999999999863 1222222222222 45677777755
Q ss_pred -eeeecCCCccccceeEEEEeeccc
Q 011709 443 -CLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 443 -~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
.++.||. .+.+++|+....
T Consensus 432 ~~la~GG~-----k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 432 FTLAFGGE-----KAVLRVWDIFTN 451 (463)
T ss_pred eEEEecCc-----cceEEEeecccC
Confidence 4555666 678999987654
No 86
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.8e-26 Score=194.88 Aligned_cols=229 Identities=20% Similarity=0.371 Sum_probs=179.8
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC--c
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--Y 210 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~--~ 210 (479)
....-.|.+.|++++. ++.++|+||.|-+|+|||+.+. .....+..|.+ .|+++.|.+.-. .
T Consensus 36 lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~------------~qlg~ll~Hag-sitaL~F~~~~S~sh 99 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKR------------KQLGILLSHAG-SITALKFYPPLSKSH 99 (362)
T ss_pred cccccccccceeEEEe---cceeEeccCCCCcEEEEeccch------------hhhcceecccc-ceEEEEecCCcchhh
Confidence 4455689999999998 6679999999999999999987 55667888887 599999998764 9
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
|++|+.||.|.+|+.... ..+..+++|.+.|+.++.||.+
T Consensus 100 LlS~sdDG~i~iw~~~~W----------------------------------------~~~~slK~H~~~Vt~lsiHPS~ 139 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSW----------------------------------------ELLKSLKAHKGQVTDLSIHPSG 139 (362)
T ss_pred eeeecCCCcEEEEEcCCe----------------------------------------EEeeeecccccccceeEecCCC
Confidence 999999999999998643 3347888999999999999999
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCceeeec-------------------------------------cCCCCeEEEEecC
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEK-------------------------------------AHDADLHCVDWNP 333 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------------------~~~~~v~~l~~sp 333 (479)
.+.++.+.|+.++.||+-.++...+..+. ..+..+.|+.|.
T Consensus 140 -KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l- 217 (362)
T KOG0294|consen 140 -KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL- 217 (362)
T ss_pred -ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-
Confidence 78999999999999999877632111110 001234555554
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEE--ecCCCcEEEEEeCCCCEEEEeCCCCCccccC
Q 011709 334 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW--SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 411 (479)
Q Consensus 334 ~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~ 411 (479)
++.+|++|++|+.|++||... ..++..+.+|...|..+.+ .|++. +|+|+|.||.|+|||+++..+
T Consensus 218 -~~~~L~vG~d~~~i~~~D~ds------~~~~~~~~AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~~k---- 285 (362)
T KOG0294|consen 218 -DGSELLVGGDNEWISLKDTDS------DTPLTEFLAHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDMETK---- 285 (362)
T ss_pred -CCceEEEecCCceEEEeccCC------CccceeeecchhheeeeEEEecCCce-EEEEeccCceEEEEEcccccc----
Confidence 678899999999999999998 6899999999999999984 34444 688999999999999998422
Q ss_pred CCCCCCCCCeeEEEeCCCCCceeEEE
Q 011709 412 GPRTTNYPAGLFFQHAGHSPSSSIKF 437 (479)
Q Consensus 412 ~~~~~~~~~~l~~~~~gh~~~~~~~~ 437 (479)
.+|.++..+......+++..
T Consensus 286 ------~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 286 ------KRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred ------CCcceeEEeecCCccceeee
Confidence 34555655554444555444
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=4.6e-26 Score=190.09 Aligned_cols=250 Identities=17% Similarity=0.335 Sum_probs=198.6
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC-CCcEEE
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLS 213 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~-~~~l~s 213 (479)
...+|.+.|.+|+|+. ++..||+|+.|+++.+|+++... ........+|++. |-.++|+|. ...|++
T Consensus 15 ~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r----------~~~~~~~~gh~~s-vdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDR----------FRKELVYRGHTDS-VDQLCWDPKHPDLFAT 82 (313)
T ss_pred HhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchh----------hhhhhcccCCCcc-hhhheeCCCCCcceEE
Confidence 3457899999999999 89999999999999999999872 2334567889975 678999886 458999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
++.|.+|++||++..++... ... +..=.-+.|+|+| .+
T Consensus 83 as~dk~ir~wd~r~~k~~~~----------------------------------------i~~-~~eni~i~wsp~g-~~ 120 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTAR----------------------------------------IET-KGENINITWSPDG-EY 120 (313)
T ss_pred ecCCceEEEEEeccCcEEEE----------------------------------------eec-cCcceEEEEcCCC-CE
Confidence 99999999999987655322 221 2223457899999 68
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
++.++.|..|.+.|.|+.+ .... ......++-++|+. ++++++.....|+|.|..... .+++..+.+|..
T Consensus 121 ~~~~~kdD~it~id~r~~~--~~~~-~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsyps------Lkpv~si~AH~s 190 (313)
T KOG1407|consen 121 IAVGNKDDRITFIDARTYK--IVNE-EQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPS------LKPVQSIKAHPS 190 (313)
T ss_pred EEEecCcccEEEEEecccc--eeeh-hcccceeeeeeecC-CCCEEEEecCCceEEEEeccc------cccccccccCCc
Confidence 9999999999999999887 3333 34566788899996 788888888889999999887 689999999999
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccc
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSY 453 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~ 453 (479)
...||.|+|+|++ ||+|+.|..+.+||+... ....+|. .---+|..+.||.||++|++++.
T Consensus 191 nCicI~f~p~Gry-fA~GsADAlvSLWD~~EL-------------iC~R~is-RldwpVRTlSFS~dg~~lASaSE---- 251 (313)
T KOG1407|consen 191 NCICIEFDPDGRY-FATGSADALVSLWDVDEL-------------ICERCIS-RLDWPVRTLSFSHDGRMLASASE---- 251 (313)
T ss_pred ceEEEEECCCCce-EeeccccceeeccChhHh-------------hhheeec-cccCceEEEEeccCcceeeccCc----
Confidence 9999999999996 899999999999999873 1111221 11245899999999999999999
Q ss_pred cceeEEEEeeccccc
Q 011709 454 ANKKIKIYCHLEALK 468 (479)
Q Consensus 454 ~d~~i~i~~~~~~~~ 468 (479)
|..|.|=.+..--+
T Consensus 252 -Dh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 252 -DHFIDIAEVETGDR 265 (313)
T ss_pred -cceEEeEecccCCe
Confidence 77777665444433
No 88
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-26 Score=197.26 Aligned_cols=263 Identities=19% Similarity=0.313 Sum_probs=209.2
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECC----CCCCc--c--------c--------------cCCCCC
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE----AQPNR--H--------A--------------VLGATN 184 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~----~~~~~--~--------~--------------~~~~~~ 184 (479)
..+.-+|.|.|++|+|++ .+.+++|++.|++..||... ..... . . ..++.-
T Consensus 183 L~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 183 LATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred eeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 566779999999999999 88899999999999999721 11100 0 0 011112
Q ss_pred CCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCC
Q 011709 185 SRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264 (479)
Q Consensus 185 ~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (479)
..++..+.+|.. .|.+..|...|+.++++++|.+..+||++++.
T Consensus 262 RvPl~~ltgH~~-vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge----------------------------------- 305 (481)
T KOG0300|consen 262 RVPLMRLTGHRA-VVSACDWLAGGQQMVTASWDRTANLWDVETGE----------------------------------- 305 (481)
T ss_pred eeeeeeeecccc-ceEehhhhcCcceeeeeeccccceeeeeccCc-----------------------------------
Confidence 246678999997 68899999999999999999999999997654
Q ss_pred CCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC
Q 011709 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 344 (479)
Q Consensus 265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~ 344 (479)
++..+.||....+-++-+|.. .++++++.|.+.++||+|. ..+.+..+.+|...|+++.|+- +..+++|++
T Consensus 306 -----~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRe-aI~sV~VFQGHtdtVTS~vF~~--dd~vVSgSD 376 (481)
T KOG0300|consen 306 -----VVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFRE-AIQSVAVFQGHTDTVTSVVFNT--DDRVVSGSD 376 (481)
T ss_pred -----eeccccCcchhccccccCCcc-eEEEEeccCceeEeccchh-hcceeeeecccccceeEEEEec--CCceeecCC
Confidence 347788999999999999988 7999999999999999994 3346788899999999999995 567899999
Q ss_pred CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEE
Q 011709 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (479)
Q Consensus 345 dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 424 (479)
|.+|+|||++++. .++.+++ -..+++.++.+..++ ++|.--++..|++||++... +.. .| ..
T Consensus 377 DrTvKvWdLrNMR-----splATIR-tdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~R--laR------lP---rt 438 (481)
T KOG0300|consen 377 DRTVKVWDLRNMR-----SPLATIR-TDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNR--LAR------LP---RT 438 (481)
T ss_pred CceEEEeeecccc-----Ccceeee-cCCccceeEeecCCc-eEEeccCCceEEEEecCCCc--ccc------CC---cc
Confidence 9999999999973 6888887 467899999998777 78888888999999998531 111 11 23
Q ss_pred EeCCCCC-ceeEEEecC--CCeeeecCCCccccceeEEEEeec
Q 011709 425 QHAGHSP-SSSIKFVLR--ESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 425 ~~~gh~~-~~~~~~sp~--~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
...||.. |++++|.-+ -.-|+++|. |..+-.|.+.
T Consensus 439 sRqgHrRMV~c~AW~eehp~cnLftcGF-----DR~v~gW~in 476 (481)
T KOG0300|consen 439 SRQGHRRMVTCCAWLEEHPACNLFTCGF-----DRMVAGWKIN 476 (481)
T ss_pred cccccceeeeeeeccccCcccccccccc-----cceeeeeEec
Confidence 5678887 999999754 245777777 7788888643
No 89
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=4.5e-26 Score=198.70 Aligned_cols=287 Identities=17% Similarity=0.230 Sum_probs=203.1
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..+|...|. .++. .+|+.++.-.+|....- + ......+|.+.|++
T Consensus 66 svFavsl~P~---------~~l~----aTGGgDD~AflW~~~~g---------------e------~~~eltgHKDSVt~ 111 (399)
T KOG0296|consen 66 SVFAVSLHPN---------NNLV----ATGGGDDLAFLWDISTG---------------E------FAGELTGHKDSVTC 111 (399)
T ss_pred ceEEEEeCCC---------CceE----EecCCCceEEEEEccCC---------------c------ceeEecCCCCceEE
Confidence 6677777774 2332 46778888888875421 0 15666799999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccC------------------------------CCCCCCCcEEEeccC
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL------------------------------GATNSRPDLILTGHQ 195 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~------------------------------~~~~~~~~~~~~~h~ 195 (479)
+.|+. ++.+||||.-+|.|+||+..++.....+. ..........+.||.
T Consensus 112 ~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~ 190 (399)
T KOG0296|consen 112 CSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHN 190 (399)
T ss_pred EEEcc-CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCC
Confidence 99999 88899999999999999998876443311 001113456788998
Q ss_pred CCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCC-----cccccCCCCCceeecCCCCCCCCCCCCCCCCCCC
Q 011709 196 DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP-----ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (479)
Q Consensus 196 ~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (479)
. .+++=.|.|+|++++++..||+|++||+.++........ ............+.. ....+........+++.
T Consensus 191 ~-~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~--g~~e~~~~~~~~~sgKV 267 (399)
T KOG0296|consen 191 S-PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK--GNSEGVACGVNNGSGKV 267 (399)
T ss_pred C-CcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe--ccCCccEEEEccccceE
Confidence 7 478999999999999999999999999998755332221 000011111111111 11111111111122211
Q ss_pred c--------eeecCCCCceEEEEEee---CCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEE
Q 011709 271 R--------GIYNGHEDTVEDVTFCP---SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI 339 (479)
Q Consensus 271 ~--------~~~~~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l 339 (479)
+ .....+...+.++.+.| .- .++|+|+-||+|.|||+...+ ++....|..+|..+.|-+ ..+|
T Consensus 268 v~~~n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~~~---~R~~c~he~~V~~l~w~~--t~~l 341 (399)
T KOG0296|consen 268 VNCNNGTVPELKPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAAST---LRHICEHEDGVTKLKWLN--TDYL 341 (399)
T ss_pred EEecCCCCccccccchhhhhhhhhccccccc-chhhcccccceEEEEecccch---hheeccCCCceEEEEEcC--cchh
Confidence 1 11223455555555544 44 478899999999999999877 444558999999999986 5799
Q ss_pred EEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCC
Q 011709 340 LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 340 ~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~ 403 (479)
++++.+|.|+.||.|+ ++.+.++.+|...|.+++++|+.+ +++|+|.|++.+||++.
T Consensus 342 ~t~c~~g~v~~wDaRt------G~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 342 LTACANGKVRQWDART------GQLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeeccCceEEeeeccc------cceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 9999999999999999 899999999999999999999998 57799999999999874
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.8e-27 Score=217.77 Aligned_cols=255 Identities=18% Similarity=0.273 Sum_probs=206.9
Q ss_pred cCCCcee---EEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 138 IHPGEVN---RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 138 ~h~~~V~---~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
.|...|+ .+..+..++++|.||+.||.|++|++........ ......+..|.+ .|+.+....+++.|+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------~~~~asme~HsD-WVNDiiL~~~~~tlIS~ 91 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------TPYIASMEHHSD-WVNDIILCGNGKTLISA 91 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------cchhhhhhhhHh-HHhhHHhhcCCCceEEe
Confidence 4555566 5666777888999999999999999987643221 124677889997 58999999999999999
Q ss_pred cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE-eeCCCcE
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF-CPSSAQE 293 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~ 293 (479)
|.|-+|++|+...... .++.++..|...|.+++. .++. .+
T Consensus 92 SsDtTVK~W~~~~~~~--------------------------------------~c~stir~H~DYVkcla~~ak~~-~l 132 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNT--------------------------------------FCMSTIRTHKDYVKCLAYIAKNN-EL 132 (735)
T ss_pred cCCceEEEeecccCcc--------------------------------------hhHhhhhcccchheeeeecccCc-ee
Confidence 9999999999875321 123567789999999999 5555 78
Q ss_pred EEEEecCCeEEEEeCCCCCCCce--------eeec-cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCc
Q 011709 294 FCSVGDDSCLILWDARVGTSPVI--------KVEK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 364 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~--------~~~~-~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~ 364 (479)
+++|+-|+.|.+||+.++....+ ..+. ++...|++++.++ .+..|++|+..+.|++||.|+ .+.
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt------~~k 205 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRT------CKK 205 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEecccc------ccc
Confidence 99999999999999997732111 1222 7889999999999 899999999999999999999 788
Q ss_pred eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCe
Q 011709 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESC 443 (479)
Q Consensus 365 ~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~ 443 (479)
+..++||+..|..+..+++|..+ +|+|.||+|++||+... ..+++...|.. +.++.-+|+-..
T Consensus 206 imkLrGHTdNVr~ll~~dDGt~~-ls~sSDgtIrlWdLgqQ---------------rCl~T~~vH~e~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 206 IMKLRGHTDNVRVLLVNDDGTRL-LSASSDGTIRLWDLGQQ---------------RCLATYIVHKEGVWALQSSPSFTH 269 (735)
T ss_pred eeeeeccccceEEEEEcCCCCeE-eecCCCceEEeeecccc---------------ceeeeEEeccCceEEEeeCCCcce
Confidence 99999999999999999999975 59999999999999873 23444555655 788888999999
Q ss_pred eeecCCCccccceeEEEEeeccc
Q 011709 444 LVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 444 l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
+.+|+. ||.|..=+....
T Consensus 270 vYsG~r-----d~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 270 VYSGGR-----DGNIYRTDLRNP 287 (735)
T ss_pred EEecCC-----CCcEEecccCCc
Confidence 999999 888876655543
No 91
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.3e-26 Score=223.84 Aligned_cols=236 Identities=22% Similarity=0.404 Sum_probs=201.4
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEE-EeccCCCceeeeeecCCCCcEEEecCC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
|...+.+..|+ ...+++++.|++|++||..++ ..+.. +.||.+. |.++++..-+.+|++|+.|
T Consensus 207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~------------~~i~~~l~GH~g~-V~~l~~~~~~~~lvsgS~D 270 (537)
T KOG0274|consen 207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNG------------YLILTRLVGHFGG-VWGLAFPSGGDKLVSGSTD 270 (537)
T ss_pred Ccchhhhheee---cCeEEecCCCceeEEeecccc------------eEEEeeccCCCCC-ceeEEEecCCCEEEEEecC
Confidence 56678888886 458999999999999999988 55556 9999985 8999998877899999999
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
.++++||+.++.+ ...+.+|...|.++...+ ..+++|
T Consensus 271 ~t~rvWd~~sg~C----------------------------------------~~~l~gh~stv~~~~~~~---~~~~sg 307 (537)
T KOG0274|consen 271 KTERVWDCSTGEC----------------------------------------THSLQGHTSSVRCLTIDP---FLLVSG 307 (537)
T ss_pred CcEEeEecCCCcE----------------------------------------EEEecCCCceEEEEEccC---ceEeec
Confidence 9999999876554 478889999999998764 568889
Q ss_pred ecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEE
Q 011709 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 377 (479)
+.|.+|++|++.++. ++..+.+|...|+++..+ +.++++|+.||+|++||++. +++++++.+|...|++
T Consensus 308 s~D~tVkVW~v~n~~--~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~------~~cl~sl~gH~~~V~s 376 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNGA--CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRT------GKCLKSLSGHTGRVYS 376 (537)
T ss_pred cCCceEEEEeccCcc--eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhh------ceeeeeecCCcceEEE
Confidence 999999999999988 788888899999999995 68999999999999999998 8999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCcccccee
Q 011709 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKK 457 (479)
Q Consensus 378 l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~ 457 (479)
+.+.+. . .+.+|+.|++|++||+++.. ..+.+..+|..+. -.....+.+|++++. |+.
T Consensus 377 l~~~~~-~-~~~Sgs~D~~IkvWdl~~~~--------------~c~~tl~~h~~~v-~~l~~~~~~Lvs~~a-----D~~ 434 (537)
T KOG0274|consen 377 LIVDSE-N-RLLSGSLDTTIKVWDLRTKR--------------KCIHTLQGHTSLV-SSLLLRDNFLVSSSA-----DGT 434 (537)
T ss_pred EEecCc-c-eEEeeeeccceEeecCCchh--------------hhhhhhcCCcccc-cccccccceeEeccc-----ccc
Confidence 998875 4 46699999999999999841 3345677787743 344457789999999 999
Q ss_pred EEEEeeccc
Q 011709 458 IKIYCHLEA 466 (479)
Q Consensus 458 i~i~~~~~~ 466 (479)
|++|+..+.
T Consensus 435 Ik~WD~~~~ 443 (537)
T KOG0274|consen 435 IKLWDAEEG 443 (537)
T ss_pred EEEeecccC
Confidence 999976654
No 92
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.8e-27 Score=208.38 Aligned_cols=248 Identities=20% Similarity=0.265 Sum_probs=202.9
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
....-.|.++|+.+.|.+ +...|++|+.|..|++|++.... .....++.|..+ .|+.++|.+++.+++
T Consensus 168 ~~~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k----------~~~~~tLaGs~g-~it~~d~d~~~~~~i 235 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEK----------SELISTLAGSLG-NITSIDFDSDNKHVI 235 (459)
T ss_pred hhhhhccccccceeEEcc-Ccchhhhcchhhhhhhhhcccch----------hhhhhhhhccCC-CcceeeecCCCceEE
Confidence 344457999999999999 77799999999999999998762 235566777776 489999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+++.|+.+++|++.... .+.++.+|+..|+++.|.... .
T Consensus 236 Aas~d~~~r~Wnvd~~r----------------------------------------~~~TLsGHtdkVt~ak~~~~~-~ 274 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLR----------------------------------------LRHTLSGHTDKVTAAKFKLSH-S 274 (459)
T ss_pred eecCCCceeeeeccchh----------------------------------------hhhhhcccccceeeehhhccc-c
Confidence 99999999999996533 347889999999999998776 4
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
.+++|+.|.+|++||+.... +.+... ....++.|..+ ...+++|-.|++|++||+|. ..++.+...+.
T Consensus 275 ~vVsgs~DRtiK~WDl~k~~--C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs------~~~~~sv~~gg 342 (459)
T KOG0288|consen 275 RVVSGSADRTIKLWDLQKAY--CSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRS------ADKTRSVPLGG 342 (459)
T ss_pred ceeeccccchhhhhhhhhhh--eecccc-ccccccceEec---ceeeeecccccceEEEeccC------CceeeEeecCc
Confidence 49999999999999999876 454442 33456667665 47889999999999999998 67888888765
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC---CceeEEEecCCCeeeecCC
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS---PSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~---~~~~~~~sp~~~~l~~~~~ 449 (479)
.|+++..++++..++ +++.|.++.+.|++...- ...|...|.. +.+.+.|||++.|+++|+.
T Consensus 343 -~vtSl~ls~~g~~lL-sssRDdtl~viDlRt~eI-------------~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 343 -RVTSLDLSMDGLELL-SSSRDDTLKVIDLRTKEI-------------RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred -ceeeEeeccCCeEEe-eecCCCceeeeecccccE-------------EEEeeccccccccccceeEECCCCceeeeccC
Confidence 999999999999866 668999999999998422 2233443333 2789999999999999999
Q ss_pred CccccceeEEEEeecc
Q 011709 450 GLSYANKKIKIYCHLE 465 (479)
Q Consensus 450 ~~~~~d~~i~i~~~~~ 465 (479)
||+|+||.+..
T Consensus 408 -----dgsv~iW~v~t 418 (459)
T KOG0288|consen 408 -----DGSVYIWSVFT 418 (459)
T ss_pred -----CCcEEEEEccC
Confidence 99999997654
No 93
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=2.3e-25 Score=210.81 Aligned_cols=250 Identities=18% Similarity=0.318 Sum_probs=204.0
Q ss_pred eeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCc
Q 011709 131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (479)
Q Consensus 131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~ 210 (479)
...+...+|..+|..++++. +..++++|+. +.|+||+..+. +++.++... -+.+..|.|.+++
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~-d~~~~~Sga~-~SikiWn~~t~------------kciRTi~~~---y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSS-DSILLASGAG-ESIKIWNRDTL------------KCIRTITCG---YILASKFVPGDRY 426 (888)
T ss_pred cceeeeccchhheeEEEeec-CceeeeecCC-CcEEEEEccCc------------ceeEEeccc---cEEEEEecCCCce
Confidence 34677789999999999998 6667777765 58999999988 555555442 4789999999999
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
+++|...|.+.++|+.+... +...+.|.+.|.+++.+|++
T Consensus 427 Iv~G~k~Gel~vfdlaS~~l----------------------------------------~Eti~AHdgaIWsi~~~pD~ 466 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLASASL----------------------------------------VETIRAHDGAIWSISLSPDN 466 (888)
T ss_pred EEEeccCCceEEEEeehhhh----------------------------------------hhhhhccccceeeeeecCCC
Confidence 99999999999999965322 24556799999999999999
Q ss_pred CcEEEEEecCCeEEEEeCCCCCC------Ccee----eeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 011709 291 AQEFCSVGDDSCLILWDARVGTS------PVIK----VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~------~~~~----~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~ 360 (479)
..+++||.|.+|++||..--.. ..+. ..-.-+..|.|+++|| ++.+|+.+=-|.+|+||-+.+
T Consensus 467 -~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDt----- 539 (888)
T KOG0306|consen 467 -KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDT----- 539 (888)
T ss_pred -CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecc-----
Confidence 6799999999999999753210 0111 1113457899999999 999999999999999999998
Q ss_pred CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEec
Q 011709 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVL 439 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp 439 (479)
.+....+-||.-||.|+..+||+. +++|||.|..|+||-+.-+ .+- .-+| +|.+ |.++.|-|
T Consensus 540 -lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFG-DCH-----------KS~f---AHdDSvm~V~F~P 602 (888)
T KOG0306|consen 540 -LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFG-DCH-----------KSFF---AHDDSVMSVQFLP 602 (888)
T ss_pred -eeeeeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccc-hhh-----------hhhh---cccCceeEEEEcc
Confidence 577888999999999999999999 6889999999999999874 222 2233 4555 89999999
Q ss_pred CCCeeeecCCCccccceeEEEEeeccc
Q 011709 440 RESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 440 ~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
+...++++|. |+.|+-|+....
T Consensus 603 ~~~~FFt~gK-----D~kvKqWDg~kF 624 (888)
T KOG0306|consen 603 KTHLFFTCGK-----DGKVKQWDGEKF 624 (888)
T ss_pred cceeEEEecC-----cceEEeechhhh
Confidence 9999999999 999999975543
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.2e-25 Score=200.04 Aligned_cols=275 Identities=18% Similarity=0.314 Sum_probs=211.0
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCC-----CCCCcEEE-eccCCCceeeeeecCC
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGAT-----NSRPDLIL-TGHQDNAEFALAMCPT 207 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~-~~h~~~~v~~l~~s~~ 207 (479)
.....|.-+|.++.++| +..+..+++.+|+|.=|++.++....-+.... ...+...- .+|.. .+.+++.++|
T Consensus 136 ~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~k-eil~~avS~D 213 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVK-EILTLAVSSD 213 (479)
T ss_pred eeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccc-eeEEEEEcCC
Confidence 44567999999999999 77799999999999999999886442111110 00111111 48886 5889999999
Q ss_pred CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 208 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
|++|++|+.|..|.||+.++.. .++.+.+|.+.|.+++|-
T Consensus 214 gkylatgg~d~~v~Iw~~~t~e----------------------------------------hv~~~~ghr~~V~~L~fr 253 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLE----------------------------------------HVKVFKGHRGAVSSLAFR 253 (479)
T ss_pred CcEEEecCCCceEEEecCcccc----------------------------------------hhhcccccccceeeeeee
Confidence 9999999999999999996543 346788999999999997
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceee
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~ 367 (479)
..- .-+++++.|++|++|++.... .+.++.+|...|.+|.... -++.+-+|+.|+++++|++.. ..-..
T Consensus 254 ~gt-~~lys~s~Drsvkvw~~~~~s--~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e-------esqli 322 (479)
T KOG0299|consen 254 KGT-SELYSASADRSVKVWSIDQLS--YVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE-------ESQLI 322 (479)
T ss_pred cCc-cceeeeecCCceEEEehhHhH--HHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccc-------cceee
Confidence 654 679999999999999999887 6888889999999999887 677888888999999999954 34445
Q ss_pred ecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeec
Q 011709 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDN 447 (479)
Q Consensus 368 ~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~ 447 (479)
+.+|.+.+-|++|-.+.. |++||.||.|.+|++.+.........++. ..+.+ -...+..=+++++-.|...++++|
T Consensus 323 frg~~~sidcv~~In~~H--fvsGSdnG~IaLWs~~KKkplf~~~~AHg-v~~~~-~~~~~~~Witsla~i~~sdL~asG 398 (479)
T KOG0299|consen 323 FRGGEGSIDCVAFINDEH--FVSGSDNGSIALWSLLKKKPLFTSRLAHG-VIPEL-DPVNGNFWITSLAVIPGSDLLASG 398 (479)
T ss_pred eeCCCCCeeeEEEecccc--eeeccCCceEEEeeecccCceeEeecccc-ccCCc-cccccccceeeeEecccCceEEec
Confidence 788999999999988765 67999999999999988433222222222 11111 000111127899999999999999
Q ss_pred CCCccccceeEEEEeecccccce
Q 011709 448 NHGLSYANKKIKIYCHLEALKSF 470 (479)
Q Consensus 448 ~~~~~~~d~~i~i~~~~~~~~~~ 470 (479)
+. +|.|++|.+.+-++..
T Consensus 399 S~-----~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 399 SW-----SGCVRLWKIEDGLRAI 416 (479)
T ss_pred CC-----CCceEEEEecCCcccc
Confidence 99 9999999887775543
No 95
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.1e-25 Score=192.16 Aligned_cols=248 Identities=16% Similarity=0.337 Sum_probs=185.4
Q ss_pred eCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCC
Q 011709 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA 172 (479)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~ 172 (479)
++|+-+-.|+|.+++...... ........+.......+.....|.++|+++.|+| ...+|++|+.|++|++||+.+
T Consensus 128 ATGsaD~SIKildvermlaks---~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~ILiS~srD~tvKlFDfsK 203 (430)
T KOG0640|consen 128 ATGSADASIKILDVERMLAKS---KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETILISGSRDNTVKLFDFSK 203 (430)
T ss_pred EccCCcceEEEeehhhhhhhc---chhhhccCCcccCCceEeehhhccCcccceeecc-hhheEEeccCCCeEEEEeccc
Confidence 567788899998876432211 1111111111111223555678999999999999 778999999999999999987
Q ss_pred CCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecC
Q 011709 173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 252 (479)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (479)
...+. ....+..- ..|.++.|+|.|.+|+.|..-.++++||+++.++.....+
T Consensus 204 ~saKr---------A~K~~qd~--~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP---------------- 256 (430)
T KOG0640|consen 204 TSAKR---------AFKVFQDT--EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP---------------- 256 (430)
T ss_pred HHHHH---------HHHHhhcc--ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc----------------
Confidence 63221 11122221 2589999999999999999999999999998655432222
Q ss_pred CCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeec-cCC-CCeEEEE
Q 011709 253 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHD-ADLHCVD 330 (479)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~-~~v~~l~ 330 (479)
-..|++.|+++.+++.+ ++.++++.||.|++||--+++ ++.++. .|. ..|.+..
T Consensus 257 ---------------------d~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r--Cv~t~~~AH~gsevcSa~ 312 (430)
T KOG0640|consen 257 ---------------------DDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR--CVRTIGNAHGGSEVCSAV 312 (430)
T ss_pred ---------------------ccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHH--HHHHHHhhcCCceeeeEE
Confidence 34599999999999999 799999999999999988887 565543 454 5789999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec-----------------------------------------
Q 011709 331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE----------------------------------------- 369 (479)
Q Consensus 331 ~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~----------------------------------------- 369 (479)
|.. +++||++.+.|..+++|.+.+ ++++.++.
T Consensus 313 Ftk-n~kyiLsSG~DS~vkLWEi~t------~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 313 FTK-NGKYILSSGKDSTVKLWEIST------GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred Ecc-CCeEEeecCCcceeeeeeecC------CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 999 999999999999999999977 33333221
Q ss_pred --------CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCC
Q 011709 370 --------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 370 --------~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~ 403 (479)
+|.+++..+.-+|.++ .|.+||.|..+|+|--+
T Consensus 386 dr~~l~slgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 386 DRVALLSLGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhcccCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence 6778888888888888 47788888888888643
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.6e-25 Score=200.93 Aligned_cols=234 Identities=20% Similarity=0.308 Sum_probs=191.5
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
..|...|.+++.++ ++.+||+|+.|..|.||+.++. ..+..+.+|.+ .|.+++|-..-..|++++.
T Consensus 199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~------------ehv~~~~ghr~-~V~~L~fr~gt~~lys~s~ 264 (479)
T KOG0299|consen 199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTL------------EHVKVFKGHRG-AVSSLAFRKGTSELYSASA 264 (479)
T ss_pred ccccceeEEEEEcC-CCcEEEecCCCceEEEecCccc------------chhhccccccc-ceeeeeeecCccceeeeec
Confidence 38999999999999 9999999999999999999998 66677999997 5899999988788999999
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
|++|++|+++.. ..+.++.+|...|.++.-...+ ..+.+
T Consensus 265 Drsvkvw~~~~~----------------------------------------s~vetlyGHqd~v~~IdaL~re-R~vtV 303 (479)
T KOG0299|consen 265 DRSVKVWSIDQL----------------------------------------SYVETLYGHQDGVLGIDALSRE-RCVTV 303 (479)
T ss_pred CCceEEEehhHh----------------------------------------HHHHHHhCCccceeeechhccc-ceEEe
Confidence 999999999642 2236788999999999887766 55666
Q ss_pred EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec-CC----
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GH---- 371 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~-~h---- 371 (479)
|+.|+++++|++.... ...+.+|.+.+.|++|- +...|++|++||.|.+|++-. .+|+.+.. +|
T Consensus 304 GgrDrT~rlwKi~ees---qlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~K------Kkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 304 GGRDRTVRLWKIPEES---QLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLK------KKPLFTSRLAHGVIP 372 (479)
T ss_pred ccccceeEEEeccccc---eeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecc------cCceeEeeccccccC
Confidence 6799999999995544 44566899999999998 578899999999999999987 55665542 12
Q ss_pred -------CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCee
Q 011709 372 -------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCL 444 (479)
Q Consensus 372 -------~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l 444 (479)
..+|++++..|... |+|+|+.+|.|++|-+..+-+.+ .+++...-..-|++++|+++|..|
T Consensus 373 ~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i-----------~~l~~ls~~GfVNsl~f~~sgk~i 440 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAI-----------NLLYSLSLVGFVNSLAFSNSGKRI 440 (479)
T ss_pred CccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCcccc-----------ceeeecccccEEEEEEEccCCCEE
Confidence 23899999999888 79999999999999998853322 345555533448999999999966
Q ss_pred eecC
Q 011709 445 VDNN 448 (479)
Q Consensus 445 ~~~~ 448 (479)
+++-
T Consensus 441 vagi 444 (479)
T KOG0299|consen 441 VAGI 444 (479)
T ss_pred EEec
Confidence 6553
No 97
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.94 E-value=5.6e-25 Score=186.12 Aligned_cols=317 Identities=18% Similarity=0.243 Sum_probs=222.9
Q ss_pred EEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCC-
Q 011709 85 QRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSP- 163 (479)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg- 163 (479)
.++++||..-. .+|++-+... +++.. .+.....+.|.|+|..|+-+|.+..+|+|+..+-
T Consensus 27 icFlvgTnslK-~dNqVhll~~----------------d~e~s--~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s 87 (370)
T KOG1007|consen 27 ICFLVGTNSLK-EDNQVHLLRL----------------DSEGS--ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTS 87 (370)
T ss_pred eEEEEeccccC-CcceeEEEEe----------------cCccc--hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccC
Confidence 56667775433 4466655443 33322 2224455678899999999999999999987632
Q ss_pred ------cEEEEECCCCCCccccCCCCCCCCcEEEe-ccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCC
Q 011709 164 ------DVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP 236 (479)
Q Consensus 164 ------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 236 (479)
.+.||.+........ ......+..+. .+.+ .|.|+.|.|++..|++-. |..|.+|++.........-.
T Consensus 88 ~s~vl~~aaiw~ipe~~~~S~---~~tlE~v~~Ldteavg-~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ 162 (370)
T KOG1007|consen 88 DSGVLTGAAIWQIPEPLGQSN---SSTLECVASLDTEAVG-KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVL 162 (370)
T ss_pred CCcceeeEEEEecccccCccc---cchhhHhhcCCHHHhC-ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeec
Confidence 478999987633211 11123333443 3444 489999999999998876 88999999986544211110
Q ss_pred cccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCce
Q 011709 237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 316 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 316 (479)
. ..-.+|....++-+|+|...-.-+....|+++..||+|+..+ ..
T Consensus 163 s----------------------------------s~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~-~~ 207 (370)
T KOG1007|consen 163 S----------------------------------SESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKK-NN 207 (370)
T ss_pred c----------------------------------cccccccceecccccCCCCccceEEEeCCCcEEEEEccchhh-hc
Confidence 0 011125667788899993322344455789999999998773 34
Q ss_pred eeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCC
Q 011709 317 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL 396 (479)
Q Consensus 317 ~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~ 396 (479)
....+|...|..+.|+|....+|++|++||.|+|||.|+. ..|+.++.+|...|.++.|+|....|+.+||.|..
T Consensus 208 sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-----k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~ 282 (370)
T KOG1007|consen 208 SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-----KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA 282 (370)
T ss_pred chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC-----CccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence 4556899999999999977889999999999999999986 37999999999999999999998889999999999
Q ss_pred EEEEeCCCCCccccCCCC------C--C------CCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEE
Q 011709 397 LNIWDYEKVGKKVEQGPR------T--T------NYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIY 461 (479)
Q Consensus 397 v~iwd~~~~~~~~~~~~~------~--~------~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~ 461 (479)
|.+|.......++..... + + ..+-.++-....|.. |.+++|+..+.++++.=.. ||.+-|-
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY----DGRviIs 358 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY----DGRVIIS 358 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc----CceEEee
Confidence 999998765432211110 0 0 122234556777877 9999999988877665443 8988887
Q ss_pred eecccccc
Q 011709 462 CHLEALKS 469 (479)
Q Consensus 462 ~~~~~~~~ 469 (479)
.+...++.
T Consensus 359 ~V~r~~ky 366 (370)
T KOG1007|consen 359 SVPRFLKY 366 (370)
T ss_pred cCChhhhh
Confidence 77766653
No 98
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=9.6e-26 Score=191.24 Aligned_cols=232 Identities=22% Similarity=0.358 Sum_probs=181.1
Q ss_pred eccCCCceeeeeecCC-CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCC
Q 011709 192 TGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (479)
Q Consensus 192 ~~h~~~~v~~l~~s~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (479)
..|.+ .|+++...+. |+++++|+.||.|.|||++.......... +.+....-.
T Consensus 40 r~HgG-svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-------------------------i~k~~c~v~ 93 (397)
T KOG4283|consen 40 RPHGG-SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-------------------------IAKHKCIVA 93 (397)
T ss_pred ccCCC-ccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-------------------------eeheeeecc
Confidence 34555 5899999886 78999999999999999975421100000 000000001
Q ss_pred ceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCC--CcEEEEEeCCCcE
Q 011709 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSADNSV 348 (479)
Q Consensus 271 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~--~~~l~tgs~dg~I 348 (479)
...-.+|.-.|.++.|-|-+..+|.+++.|.++++||..+.+ ....+ ..++.|.+-+++|-. ..++|+|..|-.|
T Consensus 94 ~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ--~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~V 170 (397)
T KOG4283|consen 94 KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ--EAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQV 170 (397)
T ss_pred ccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce--eeEEe-ecCceeehhhcChhhhcceEEEEecCCCcE
Confidence 133456889999999999777799999999999999999987 33333 567788988898832 3588889999999
Q ss_pred EEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC-CCCCeeEEEeC
Q 011709 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHA 427 (479)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~-~~~~~l~~~~~ 427 (479)
++-|+.+ |..-+.+.+|.+.|.++.|+|..+++||+|+.||.|++||++....+....+.+. ..||.+- ...
T Consensus 171 rLCDi~S------Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-~n~ 243 (397)
T KOG4283|consen 171 RLCDIAS------GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-TNT 243 (397)
T ss_pred EEEeccC------CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-ccc
Confidence 9999999 8899999999999999999999999999999999999999998755655555544 3444444 667
Q ss_pred CCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 428 GHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 428 gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.|.+ +..++|+.++.++++.+. |..+++|...
T Consensus 244 ah~gkvngla~tSd~~~l~~~gt-----d~r~r~wn~~ 276 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGT-----DDRIRVWNME 276 (397)
T ss_pred cccceeeeeeecccchhhhhccC-----ccceEEeecc
Confidence 7777 899999999999999999 9999999644
No 99
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.94 E-value=5.4e-25 Score=186.39 Aligned_cols=305 Identities=20% Similarity=0.337 Sum_probs=221.9
Q ss_pred ccccccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecC
Q 011709 60 NHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIH 139 (479)
Q Consensus 60 ~~~l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 139 (479)
.++-.||.....|.-. .+...||.+|+... +..|.+.|..+... ..+ +.....+.|
T Consensus 40 ~Y~ap~~lya~~Ws~~-----~~~~~rla~gS~~E-e~~Nkvqiv~ld~~-----s~e-------------~~~~a~fd~ 95 (364)
T KOG0290|consen 40 TYNAPWPLYAMNWSVR-----PDKKFRLAVGSFIE-EYNNKVQIVQLDED-----SGE-------------LVEDANFDH 95 (364)
T ss_pred EecCCCceeeeccccC-----CCcceeEEEeeecc-ccCCeeEEEEEccC-----CCc-------------eeccCCCCC
Confidence 5567799999999754 23347888888753 35678877765411 111 112222789
Q ss_pred CCceeEEEecCCC----CcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEE----eccCCCceeeeeecCC-CCc
Q 011709 140 PGEVNRIRELPQN----TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL----TGHQDNAEFALAMCPT-EPY 210 (479)
Q Consensus 140 ~~~V~~l~~~p~~----~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~h~~~~v~~l~~s~~-~~~ 210 (479)
+-+++.+.|.|+. +++|||.++ .+|+|.+...+... .+...+ ..+...++++..|+.- -++
T Consensus 96 ~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~--------~~~~~L~~~kns~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 96 PYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRV--------ELQSVLNNNKNSEFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred CCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCce--------ehhhhhccCcccccCCcccccccccCCcce
Confidence 9999999999943 468888765 79999998542221 111111 1222346889999874 568
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
+.++|-|-+..|||++++... .....+-.|...|.+++|...+
T Consensus 166 igtSSiDTTCTiWdie~~~~~-------------------------------------~vkTQLIAHDKEV~DIaf~~~s 208 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVSG-------------------------------------TVKTQLIAHDKEVYDIAFLKGS 208 (364)
T ss_pred eEeecccCeEEEEEEeecccc-------------------------------------ceeeEEEecCcceeEEEeccCc
Confidence 889999999999999875210 0114566799999999999988
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCceeeeccC-CCCeEEEEecCCCCcEEEEEeCCC-cEEEEecCCCCCCCCCCceeee
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSADN-SVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
..+|++++.||.||+||+|......+...... ..+...++|++++.+|+||-..|+ .|.|.|+|.+ ..++..+
T Consensus 209 ~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-----~tpva~L 283 (364)
T KOG0290|consen 209 RDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-----CTPVARL 283 (364)
T ss_pred cceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-----Ccceehh
Confidence 88999999999999999998774323222222 568899999999999999988875 7999999986 5799999
Q ss_pred cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEec-CCCeeeec
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVL-RESCLVDN 447 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp-~~~~l~~~ 447 (479)
++|.+.|+.++|.|.....++|+|+|..+.|||+....++-. .-|-+.+. ....|..+.|++ ....++..
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~-------~dPilay~--a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG-------EDPILAYT--AGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC-------CCchhhhh--ccceeeeeeecccCCCEEEEE
Confidence 999999999999999988899999999999999988544111 12334444 334589999996 45566555
Q ss_pred CC
Q 011709 448 NH 449 (479)
Q Consensus 448 ~~ 449 (479)
..
T Consensus 355 ~~ 356 (364)
T KOG0290|consen 355 FG 356 (364)
T ss_pred ec
Confidence 44
No 100
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=198.43 Aligned_cols=249 Identities=19% Similarity=0.313 Sum_probs=195.6
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
....|.++|.-+.|++ +|.+||+++.|.+.-||++.... ..+...++.+|.. .|.-+.||||.++|++|
T Consensus 219 il~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~---------~~kl~~tlvgh~~-~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDV---------HFKLKKTLVGHSQ-PVSYIMWSPDDRYLLAC 287 (519)
T ss_pred hHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCc---------ceeeeeeeecccC-ceEEEEECCCCCeEEec
Confidence 3457999999999999 99999999999999999987652 1356788999998 58999999999999999
Q ss_pred cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEE
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (479)
+.|..+.+||+.++...... -.+|...+.+++|.|+| ..|
T Consensus 288 g~~e~~~lwDv~tgd~~~~y---------------------------------------~~~~~~S~~sc~W~pDg-~~~ 327 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLY---------------------------------------PSGLGFSVSSCAWCPDG-FRF 327 (519)
T ss_pred CchHheeeccCCcchhhhhc---------------------------------------ccCcCCCcceeEEccCC-cee
Confidence 99999999999876542111 12245789999999999 679
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCc
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (479)
++|+.|+++..||+.... .-.........|.+++.++ ||.++++.+.|..|++|+... ..... +..-..+
T Consensus 328 V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~------~~dr~-lise~~~ 397 (519)
T KOG0293|consen 328 VTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREA------RVDRG-LISEEQP 397 (519)
T ss_pred EecCCCCcEEEecCCcch--hhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhh------hhhhc-cccccCc
Confidence 999999999999998654 1111112336699999999 999999999999999999986 22222 2234568
Q ss_pred EEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC---ceeEEEe-cCCCeeeecCCC
Q 011709 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP---SSSIKFV-LRESCLVDNNHG 450 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~---~~~~~~s-p~~~~l~~~~~~ 450 (479)
|+++..+.++.+.| +.-.+..+.+||+... .++-...||+. +..-+|. -+..++++|+.
T Consensus 398 its~~iS~d~k~~L-vnL~~qei~LWDl~e~---------------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE- 460 (519)
T KOG0293|consen 398 ITSFSISKDGKLAL-VNLQDQEIHLWDLEEN---------------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE- 460 (519)
T ss_pred eeEEEEcCCCcEEE-EEcccCeeEEeecchh---------------hHHHHhhcccccceEEEeccCCCCcceEEecCC-
Confidence 99999999999655 6666889999999863 22333455554 5666675 45689999999
Q ss_pred ccccceeEEEEeecc
Q 011709 451 LSYANKKIKIYCHLE 465 (479)
Q Consensus 451 ~~~~d~~i~i~~~~~ 465 (479)
|+.|+||....
T Consensus 461 ----D~kvyIWhr~s 471 (519)
T KOG0293|consen 461 ----DSKVYIWHRIS 471 (519)
T ss_pred ----CceEEEEEccC
Confidence 99999996544
No 101
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5.1e-27 Score=221.05 Aligned_cols=235 Identities=19% Similarity=0.376 Sum_probs=203.7
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
+...|...|.++..- ...+.+++|+.|-.+-+|.+... ..+..+.+|.. .|-++.|++...+|+.|
T Consensus 23 ~~~~hsaav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~kp------------~~i~S~~~hes-pIeSl~f~~~E~Llaag 88 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGKP------------NAITSLTGHES-PIESLTFDTSERLLAAG 88 (825)
T ss_pred hhhhhhhhhceeeee-ccceeeccCCCceeeccccccCC------------chhheeeccCC-cceeeecCcchhhhccc
Confidence 345788999999874 37889999999988999998876 55667999997 69999999999999999
Q ss_pred cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEE
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (479)
+.+|+|++||+.... .++++.+|...+.++.|+|.+ .++
T Consensus 89 sasgtiK~wDleeAk----------------------------------------~vrtLtgh~~~~~sv~f~P~~-~~~ 127 (825)
T KOG0267|consen 89 SASGTIKVWDLEEAK----------------------------------------IVRTLTGHLLNITSVDFHPYG-EFF 127 (825)
T ss_pred ccCCceeeeehhhhh----------------------------------------hhhhhhccccCcceeeeccce-EEe
Confidence 999999999997432 236788999999999999999 688
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCc
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (479)
++|+.|+.+.+||++... +.+.+.+|...+.++.|+| +|.+++.|++|.+++|||+.. ++.+.+|..|.+.
T Consensus 128 a~gStdtd~~iwD~Rk~G--c~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~a------gk~~~ef~~~e~~ 198 (825)
T KOG0267|consen 128 ASGSTDTDLKIWDIRKKG--CSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTA------GKLSKEFKSHEGK 198 (825)
T ss_pred ccccccccceehhhhccC--ceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccc------ccccccccccccc
Confidence 999999999999999777 6888889999999999999 999999999999999999998 8999999999999
Q ss_pred EEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC-CCceeEEEecCCCeeeecCC
Q 011709 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-SPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh-~~~~~~~~sp~~~~l~~~~~ 449 (479)
+..+.|+|..- ++++||.|++|++||+++. +++-....- .+|.+.+|+|++..+++|..
T Consensus 199 v~sle~hp~e~-Lla~Gs~d~tv~f~dletf---------------e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 199 VQSLEFHPLEV-LLAPGSSDRTVRFWDLETF---------------EVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred ccccccCchhh-hhccCCCCceeeeecccee---------------EEeeccCCccCCceeeeecCCceeeecCch
Confidence 99999999876 7999999999999999963 222222111 23899999999999888865
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.4e-25 Score=208.81 Aligned_cols=235 Identities=17% Similarity=0.350 Sum_probs=190.5
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEec
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~ 225 (479)
+.|+. .+.||.|... .|++|+..++ ........+. ..|+++.|+++|.+|+.|..+|.|.|||.
T Consensus 183 ldWss--~n~laValg~-~vylW~~~s~------------~v~~l~~~~~-~~vtSv~ws~~G~~LavG~~~g~v~iwD~ 246 (484)
T KOG0305|consen 183 LDWSS--ANVLAVALGQ-SVYLWSASSG------------SVTELCSFGE-ELVTSVKWSPDGSHLAVGTSDGTVQIWDV 246 (484)
T ss_pred hhccc--CCeEEEEecc-eEEEEecCCC------------ceEEeEecCC-CceEEEEECCCCCEEEEeecCCeEEEEeh
Confidence 45664 3477777654 7999999987 2222333334 46999999999999999999999999998
Q ss_pred CCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC-CCCceEEEEEeeCCCcEEEEEecCCeEE
Q 011709 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVGDDSCLI 304 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 304 (479)
.+.... ..+.+ |...|.+++|.. ..+.+|+.|+.|.
T Consensus 247 ~~~k~~----------------------------------------~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~ 283 (484)
T KOG0305|consen 247 KEQKKT----------------------------------------RTLRGSHASRVGSLAWNS---SVLSSGSRDGKIL 283 (484)
T ss_pred hhcccc----------------------------------------ccccCCcCceeEEEeccC---ceEEEecCCCcEE
Confidence 754332 44555 999999999982 5799999999999
Q ss_pred EEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCC
Q 011709 305 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384 (479)
Q Consensus 305 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 384 (479)
.+|+|..+.. +..+.+|...|..+.|++ ++.++|+|+.|+.+.|||... ..++..+..|..+|..++|+|..
T Consensus 284 ~~dvR~~~~~-~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~------~~p~~~~~~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 284 NHDVRISQHV-VSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLS------PEPKFTFTEHTAAVKALAWCPWQ 355 (484)
T ss_pred EEEEecchhh-hhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCC------ccccEEEeccceeeeEeeeCCCc
Confidence 9999998743 335789999999999999 999999999999999999976 67899999999999999999998
Q ss_pred CcEEEEEeC--CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 385 SSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 385 ~~llas~s~--Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
..|||+|+. |++|++||..++ .. +-.......|.++.|++..+-|+++.. |.++.|.||.
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g-~~--------------i~~vdtgsQVcsL~Wsk~~kEi~sthG---~s~n~i~lw~ 417 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTG-AR--------------IDSVDTGSQVCSLIWSKKYKELLSTHG---YSENQITLWK 417 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCC-cE--------------ecccccCCceeeEEEcCCCCEEEEecC---CCCCcEEEEe
Confidence 889999976 999999999984 22 222233345899999999877766544 4588999997
Q ss_pred ecc
Q 011709 463 HLE 465 (479)
Q Consensus 463 ~~~ 465 (479)
...
T Consensus 418 ~ps 420 (484)
T KOG0305|consen 418 YPS 420 (484)
T ss_pred ccc
Confidence 655
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=213.41 Aligned_cols=261 Identities=13% Similarity=0.258 Sum_probs=195.8
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCC--CceeeeeecCC-CCcEEEecC
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCPT-EPYVLSGGK 216 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~v~~l~~s~~-~~~l~s~s~ 216 (479)
.+..++|...+ +-..|+.++.. .+.||.+....... .+......... -.+..+.|... .++||+++.
T Consensus 39 k~~~nAIs~nr-~~~qiv~AGrs-~lklyai~~~~~~~--------~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~ 108 (839)
T KOG0269|consen 39 KAKANAISVNR-DINQIVVAGRS-LLKLYAINPNDFSE--------KCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST 108 (839)
T ss_pred ccccceEeecC-CcceeEEeccc-ceeeEeeCcccCCc--------ceeeecccccceeeehhhcccccchhhhheeecC
Confidence 34567777777 55566666554 78888776542111 11111111110 12356778743 569999999
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
.|.|.+||+..... ...+..+..|...++++.|++..+++|++
T Consensus 109 nG~i~vWdlnk~~r-------------------------------------nk~l~~f~EH~Rs~~~ldfh~tep~iliS 151 (839)
T KOG0269|consen 109 NGVISVWDLNKSIR-------------------------------------NKLLTVFNEHERSANKLDFHSTEPNILIS 151 (839)
T ss_pred CCcEEEEecCcccc-------------------------------------chhhhHhhhhccceeeeeeccCCccEEEe
Confidence 99999999975211 11225678899999999999999999999
Q ss_pred EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEE
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 376 (479)
|+.||+|++||+|..+ ...++.+....|..|.|+|..+++|+++.+.|.+++||+|.+. ++...+.+|.++|.
T Consensus 152 GSQDg~vK~~DlR~~~--S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-----r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 152 GSQDGTVKCWDLRSKK--SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-----RCEKKLTAHNGPVL 224 (839)
T ss_pred cCCCceEEEEeeeccc--ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch-----hHHHHhhcccCceE
Confidence 9999999999999988 4566667888999999999889999999999999999999864 78889999999999
Q ss_pred EEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccce
Q 011709 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANK 456 (479)
Q Consensus 377 ~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~ 456 (479)
|+.|+|++. .|||||.|+.|+|||+... .+..+..++. -.++..++|-|..++.++.+.. ..|-
T Consensus 225 c~nwhPnr~-~lATGGRDK~vkiWd~t~~------------~~~~~~tInT-iapv~rVkWRP~~~~hLAtcsm--v~dt 288 (839)
T KOG0269|consen 225 CLNWHPNRE-WLATGGRDKMVKIWDMTDS------------RAKPKHTINT-IAPVGRVKWRPARSYHLATCSM--VVDT 288 (839)
T ss_pred EEeecCCCc-eeeecCCCccEEEEeccCC------------CccceeEEee-cceeeeeeeccCccchhhhhhc--cccc
Confidence 999999777 5899999999999999863 1112222222 2458999999998876665442 3488
Q ss_pred eEEEEeecccccce
Q 011709 457 KIKIYCHLEALKSF 470 (479)
Q Consensus 457 ~i~i~~~~~~~~~~ 470 (479)
+|++|++..-|-++
T Consensus 289 sV~VWDvrRPYIP~ 302 (839)
T KOG0269|consen 289 SVHVWDVRRPYIPY 302 (839)
T ss_pred eEEEEeeccccccc
Confidence 99999988776554
No 104
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=215.78 Aligned_cols=249 Identities=19% Similarity=0.311 Sum_probs=173.8
Q ss_pred EEe-ccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCc-----------------ccccCCCCCceeec
Q 011709 190 ILT-GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA-----------------TAKSAGSSGSIIKQ 251 (479)
Q Consensus 190 ~~~-~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~ 251 (479)
.+. .|.+ .|+++.||+||++||+||.||.|+||.+............ ..............
T Consensus 261 e~~~ah~g-aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 261 EISNAHKG-AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccccccCC-cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 344 7886 5999999999999999999999999998762211000000 00000000000000
Q ss_pred CCCCCCCCCCC---CCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEE
Q 011709 252 SPKPGDGNDKA---ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC 328 (479)
Q Consensus 252 ~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 328 (479)
..........+ .-.-..+|+..+.||.+.|.++.|+..+ +|++++.|.+|++|++.... ++..+ .|...|+|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~--CL~~F-~HndfVTc 414 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE--CLKVF-SHNDFVTC 414 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc--eeeEE-ecCCeeEE
Confidence 00000011111 0112346778999999999999999875 89999999999999999877 78877 79999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCcc
Q 011709 329 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 408 (479)
Q Consensus 329 l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~ 408 (479)
|+|+|.|.+||++|+-||.||||++.. ..+..+..-..-|++++|.|+|++ .+.|+.+|.+++|+.... +.
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d-------~~Vv~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~l-k~ 485 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISD-------KKVVDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGL-KL 485 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCc-------CeeEeehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccCC-eE
Confidence 999999999999999999999999986 445555555589999999999997 569999999999999863 22
Q ss_pred ccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCC-eeeecCCCccccceeEEEEee
Q 011709 409 VEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRES-CLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 409 ~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~-~l~~~~~~~~~~d~~i~i~~~ 463 (479)
+........ ... ...| ..|+.+.|.|... .++.+++ |..|+||+.
T Consensus 486 ~~~~~I~~~-~~K---k~~~-~rITG~Q~~p~~~~~vLVTSn-----DSrIRI~d~ 531 (712)
T KOG0283|consen 486 VSDFHIRLH-NKK---KKQG-KRITGLQFFPGDPDEVLVTSN-----DSRIRIYDG 531 (712)
T ss_pred EEeeeEeec-cCc---cccC-ceeeeeEecCCCCCeEEEecC-----CCceEEEec
Confidence 222111100 000 1112 2689999998654 4666667 789999988
No 105
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=200.39 Aligned_cols=220 Identities=20% Similarity=0.412 Sum_probs=185.7
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
+.+--+|+|.++.-+| +|.+|+.|+..|.|++|.+.++ ..+..+.+|-.+ |+|+.|+-||.+|+||
T Consensus 76 q~~v~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG------------~LL~v~~aHYQ~-ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 76 QYIVLPGPVHALASSN-LGYFLLAGTISGNLYLWELSSG------------ILLNVLSAHYQS-ITCLKFSDDGSHIITG 141 (476)
T ss_pred hhcccccceeeeecCC-CceEEEeecccCcEEEEEeccc------------cHHHHHHhhccc-eeEEEEeCCCcEEEec
Confidence 5566789999999999 9999999999999999999999 666777888874 9999999999999999
Q ss_pred cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC-CcE
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQE 293 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~ 293 (479)
|.||.|.+|.+.+.... .+.....++..+..|+-+|+++...+.+ ...
T Consensus 142 skDg~V~vW~l~~lv~a-------------------------------~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~r 190 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSA-------------------------------DNDHSVKPLHIFSDHTLSITDLQIGSGGTNAR 190 (476)
T ss_pred CCCccEEEEEEEeeccc-------------------------------ccCCCccceeeeccCcceeEEEEecCCCccce
Confidence 99999999998642211 1112456778999999999999987653 247
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCC--C--------CCCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS--N--------GVGS 363 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~--~--------~~~~ 363 (479)
++|+|.|.++++||+..+. ++... .-+..+.+++.+| .+..++.|+.+|.|.+.++..... . ..+.
T Consensus 191 l~TaS~D~t~k~wdlS~g~--LLlti-~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 191 LYTASEDRTIKLWDLSLGV--LLLTI-TFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred EEEecCCceEEEEEeccce--eeEEE-ecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence 9999999999999999998 55554 5678899999999 999999999999999999877541 1 1245
Q ss_pred ceeeecCCCC--cEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 364 PINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 364 ~~~~~~~h~~--~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.+..+.+|.+ +|+|++.+-||. +|++|+.||.|+|||+..
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred eeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecch
Confidence 5677889998 999999999999 688999999999999987
No 106
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=6e-26 Score=194.86 Aligned_cols=272 Identities=16% Similarity=0.239 Sum_probs=216.5
Q ss_pred eCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCC
Q 011709 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA 172 (479)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~ 172 (479)
.+|+.+.++.||+...-+-. +++.... .-..+-|..+|.|+.|+. +..+||+|+.||.|+||.+.+
T Consensus 229 vsgSvDGFiEVWny~~GKlr-------KDLkYQA------qd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 229 VSGSVDGFIEVWNYTTGKLR-------KDLKYQA------QDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred eeccccceeeeehhccchhh-------hhhhhhh------hcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEec
Confidence 35677888888875432110 0010001 223467889999999999 888999999999999999999
Q ss_pred CCCccccCCCCCCCCcEEEe-ccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeec
Q 011709 173 QPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ 251 (479)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
+ .++..+. .|+. .|+|+.|+.|+..+++++.|.++++.-+.++++
T Consensus 295 G------------~ClRrFdrAHtk-Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~--------------------- 340 (508)
T KOG0275|consen 295 G------------QCLRRFDRAHTK-GVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC--------------------- 340 (508)
T ss_pred c------------hHHHHhhhhhcc-CeeEEEEccCcchhhcccccceEEEeccccchh---------------------
Confidence 9 5666665 7887 489999999999999999999999998865543
Q ss_pred CCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeec--cCCCCeEEE
Q 011709 252 SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCV 329 (479)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l 329 (479)
+..++||...|+...|.++| ..+++++.||+|++|+..+.. ++.+++ +...+|+++
T Consensus 341 -------------------LKEfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~Ktte--C~~Tfk~~~~d~~vnsv 398 (508)
T KOG0275|consen 341 -------------------LKEFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTE--CLSTFKPLGTDYPVNSV 398 (508)
T ss_pred -------------------HHHhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchh--hhhhccCCCCcccceeE
Confidence 47788999999999999999 789999999999999999988 555554 566789999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC---CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCC
Q 011709 330 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 406 (479)
Q Consensus 330 ~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~ 406 (479)
..-|.+...++.+....+|+|.++. ++.+..+.. ..+...+...+|.|.++ .+.+.|+.++.+.+..++
T Consensus 399 ~~~PKnpeh~iVCNrsntv~imn~q-------GQvVrsfsSGkREgGdFi~~~lSpkGewi-YcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 399 ILLPKNPEHFIVCNRSNTVYIMNMQ-------GQVVRSFSSGKREGGDFINAILSPKGEWI-YCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred EEcCCCCceEEEEcCCCeEEEEecc-------ceEEeeeccCCccCCceEEEEecCCCcEE-EEEccCcEEEEEEeecCc
Confidence 9999888999999999999999987 577777753 23456677789999975 588899999999998852
Q ss_pred ccccCCCCCCCCCCeeEEEeCCC-CCceeEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 407 KKVEQGPRTTNYPAGLFFQHAGH-SPSSSIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 407 ~~~~~~~~~~~~~~~l~~~~~gh-~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
. -....-| ..+..++-+|....|++-+. ||.+++|.
T Consensus 471 L---------------E~tl~VhEkdvIGl~HHPHqNllAsYsE-----DgllKLWk 507 (508)
T KOG0275|consen 471 L---------------ERTLPVHEKDVIGLTHHPHQNLLASYSE-----DGLLKLWK 507 (508)
T ss_pred e---------------eeeeecccccccccccCcccchhhhhcc-----cchhhhcC
Confidence 2 1222333 34889999999999999888 99999984
No 107
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.5e-24 Score=184.80 Aligned_cols=243 Identities=18% Similarity=0.267 Sum_probs=190.7
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCc
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~ 219 (479)
.+.|.+|+|+|+...+++++|.||+||+|+++.... ..+ .....|.+ +|.+++|+.+|..+++|+.|+.
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~---------~~~-ka~~~~~~-PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ---------LVP-KAQQSHDG-PVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCc---------ccc-hhhhccCC-CeEEEEEccCCceEEeeccCCc
Confidence 467999999998888999999999999999987410 011 33455665 6999999999999999999999
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC-cEEEEEe
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSVG 298 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~ 298 (479)
+++||+.+++. ..+..|.++|..+.|-+... ..|+|||
T Consensus 96 ~k~wDL~S~Q~-----------------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl~TGS 134 (347)
T KOG0647|consen 96 AKLWDLASGQV-----------------------------------------SQVAAHDAPVKTCHWVPGMNYQCLVTGS 134 (347)
T ss_pred eEEEEccCCCe-----------------------------------------eeeeecccceeEEEEecCCCcceeEecc
Confidence 99999987543 45667999999999987541 3799999
Q ss_pred cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC----Cc
Q 011709 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS----AA 374 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~----~~ 374 (479)
.|.+|++||+|... .+.++ ..+..++++..- ..+++.+..++.|.+|++++.. .+++.+. -.
T Consensus 135 WDKTlKfWD~R~~~--pv~t~-~LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~--------te~k~~~SpLk~Q 200 (347)
T KOG0647|consen 135 WDKTLKFWDTRSSN--PVATL-QLPERVYAADVL---YPMAVVATAERHIAVYNLENPP--------TEFKRIESPLKWQ 200 (347)
T ss_pred cccceeecccCCCC--eeeee-eccceeeehhcc---CceeEEEecCCcEEEEEcCCCc--------chhhhhcCcccce
Confidence 99999999999877 45554 456778888764 3688899999999999998732 2222222 35
Q ss_pred EEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC----------ceeEEEecCCCee
Q 011709 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP----------SSSIKFVLRESCL 444 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~----------~~~~~~sp~~~~l 444 (479)
+.||+..++... +|.|+-.|.+.|..+..+.. .--|...+|+. |.+++|+|.-..|
T Consensus 201 ~R~va~f~d~~~-~alGsiEGrv~iq~id~~~~-------------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtl 266 (347)
T KOG0647|consen 201 TRCVACFQDKDG-FALGSIEGRVAIQYIDDPNP-------------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTL 266 (347)
T ss_pred eeEEEEEecCCc-eEeeeecceEEEEecCCCCc-------------cCceeEEEeccCCCCCCceEEecceEeecccceE
Confidence 789999888885 68999999999999987411 23455555552 6889999999999
Q ss_pred eecCCCccccceeEEEEeecccc
Q 011709 445 VDNNHGLSYANKKIKIYCHLEAL 467 (479)
Q Consensus 445 ~~~~~~~~~~d~~i~i~~~~~~~ 467 (479)
+++|. ||.+..|+.-.+.
T Consensus 267 vTaGs-----DGtf~FWDkdar~ 284 (347)
T KOG0647|consen 267 VTAGS-----DGTFSFWDKDART 284 (347)
T ss_pred EEecC-----CceEEEecchhhh
Confidence 99999 9999999754443
No 108
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=9e-26 Score=187.13 Aligned_cols=206 Identities=20% Similarity=0.407 Sum_probs=175.7
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.+..+.|..-|.+++|+. +.+.|+||+.+.-+||||++... -+...+.+|+++ |..+.|....+.++
T Consensus 93 elhsf~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~-----------App~E~~ghtg~-Ir~v~wc~eD~~iL 159 (334)
T KOG0278|consen 93 ELHSFEHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPK-----------APPKEISGHTGG-IRTVLWCHEDKCIL 159 (334)
T ss_pred hhhhhhhhheeeeEEecc-cchhhhccchHHHhhhhhccCCC-----------CCchhhcCCCCc-ceeEEEeccCceEE
Confidence 345678999999999998 88899999999999999999873 345678899985 89999999989999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
|++.|++||+||.+++... +.+. ....|+++..+++| .
T Consensus 160 SSadd~tVRLWD~rTgt~v----------------------------------------~sL~-~~s~VtSlEvs~dG-~ 197 (334)
T KOG0278|consen 160 SSADDKTVRLWDHRTGTEV----------------------------------------QSLE-FNSPVTSLEVSQDG-R 197 (334)
T ss_pred eeccCCceEEEEeccCcEE----------------------------------------EEEe-cCCCCcceeeccCC-C
Confidence 9999999999999876442 2232 35679999999999 3
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee-cCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGH 371 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~-~~h 371 (479)
+++....+.|.+||..+.. +++.. ..+..|.+.+++| +...+++|+.|..++.||..+ +..+..+ ++|
T Consensus 198 -ilTia~gssV~Fwdaksf~--~lKs~-k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~T------geEi~~~nkgh 266 (334)
T KOG0278|consen 198 -ILTIAYGSSVKFWDAKSFG--LLKSY-KMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNT------GEEIGSYNKGH 266 (334)
T ss_pred -EEEEecCceeEEecccccc--ceeec-cCccccccccccC-CCceEEecCcceEEEEEeccC------CceeeecccCC
Confidence 6666778899999999877 56554 4677899999999 779999999999999999999 6677765 899
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
-++|.|+.|+|+|. +.|+||.||+|+||.+...
T Consensus 267 ~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 267 FGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CCceEEEEECCCCc-eeeccCCCceEEEEEecCC
Confidence 99999999999999 7899999999999998763
No 109
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=6.5e-25 Score=216.54 Aligned_cols=272 Identities=19% Similarity=0.332 Sum_probs=202.9
Q ss_pred ecCC-CceeEEEecCCCCcEEEEEe--CCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 137 IIHP-GEVNRIRELPQNTKIVATHT--DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 137 ~~h~-~~V~~l~~~p~~~~~lat~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
+.|. ..|.+|..+| ++..+|||+ .||.++||+.+.-..........-.+.+..+..|.+ .|+|+.|+|||++||+
T Consensus 9 v~H~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~-sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG-SVNCVRFSPDGSYLAS 86 (942)
T ss_pred cccCCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC-ceeEEEECCCCCeEee
Confidence 3443 4689999999 999999999 899999999876432222111112356677888987 5999999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
||.|+.|.+|+... ..... . . ...-...+.+.++.+..+.+|...|.+++|+|++ .+
T Consensus 87 GSDD~~v~iW~~~~-~~~~~-----~--f--------------gs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~ 143 (942)
T KOG0973|consen 87 GSDDRLVMIWERAE-IGSGT-----V--F--------------GSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SL 143 (942)
T ss_pred ccCcceEEEeeecc-cCCcc-----c--c--------------cccccccccceeeEEEEEecCCCccceeccCCCc-cE
Confidence 99999999999864 10000 0 0 0001122345666778999999999999999988 79
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC-
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS- 372 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~- 372 (479)
|++++.|++|.+|+.++.. .+..+.+|.+.|-.+.|+| -|+|||+-++|++|+||++.. ....+.+..+-
T Consensus 144 lvS~s~DnsViiwn~~tF~--~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~d------w~i~k~It~pf~ 214 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFE--LLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSD------WGIEKSITKPFE 214 (942)
T ss_pred EEEecccceEEEEccccce--eeeeeecccccccceEECC-ccCeeeeecCCceEEEEEccc------ceeeEeeccchh
Confidence 9999999999999999996 7899999999999999999 999999999999999999776 34455554432
Q ss_pred -----CcEEEEEEecCCCcEEEEEeC-C---CCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecC--
Q 011709 373 -----AAVLCVQWSPDKSSVFGSSAE-D---GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLR-- 440 (479)
Q Consensus 373 -----~~v~~l~~~p~~~~llas~s~-D---g~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~-- 440 (479)
.-+..+.|+|||.+ |++.-. . .++.|.+-.+ ...-...-||.. +..++|+|.
T Consensus 215 ~~~~~T~f~RlSWSPDG~~-las~nA~n~~~~~~~IieR~t---------------Wk~~~~LvGH~~p~evvrFnP~lf 278 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHH-LASPNAVNGGKSTIAIIERGT---------------WKVDKDLVGHSAPVEVVRFNPKLF 278 (942)
T ss_pred hCCCcceeeecccCCCcCe-ecchhhccCCcceeEEEecCC---------------ceeeeeeecCCCceEEEEeChHHh
Confidence 35789999999997 455532 2 2344444321 122234556665 899999983
Q ss_pred ---CC------------eeeecCCCccccceeEEEEee
Q 011709 441 ---ES------------CLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 441 ---~~------------~l~~~~~~~~~~d~~i~i~~~ 463 (479)
.. ++|+|+. |++|-||..
T Consensus 279 e~~~~ng~~~~~~~~y~i~AvgSq-----DrSlSVW~T 311 (942)
T KOG0973|consen 279 ERNNKNGTSTQPNCYYCIAAVGSQ-----DRSLSVWNT 311 (942)
T ss_pred ccccccCCccCCCcceEEEEEecC-----CccEEEEec
Confidence 12 5667777 999999976
No 110
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.7e-23 Score=176.70 Aligned_cols=239 Identities=20% Similarity=0.306 Sum_probs=183.2
Q ss_pred CCCceeEEEecCCCCcEEEEEeC--CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
+.-.|..++|..... .+..++. |.+||.-++.+. +.++.+.||.. .|.+|+.+|-+..++|++.
T Consensus 55 kkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~dN------------kylRYF~GH~~-~V~sL~~sP~~d~FlS~S~ 120 (311)
T KOG1446|consen 55 KKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHDN------------KYLRYFPGHKK-RVNSLSVSPKDDTFLSSSL 120 (311)
T ss_pred ccccccEEEEecCCc-eEEEccCCCCCceEEEEeecC------------ceEEEcCCCCc-eEEEEEecCCCCeEEeccc
Confidence 334677888877444 4444444 779999999987 88899999998 5999999999999999999
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
|++|++||++...+. ..+ +...-..++|.|+| .+||+
T Consensus 121 D~tvrLWDlR~~~cq----------------------------------------g~l--~~~~~pi~AfDp~G-LifA~ 157 (311)
T KOG1446|consen 121 DKTVRLWDLRVKKCQ----------------------------------------GLL--NLSGRPIAAFDPEG-LIFAL 157 (311)
T ss_pred CCeEEeeEecCCCCc----------------------------------------eEE--ecCCCcceeECCCC-cEEEE
Confidence 999999999854332 111 11223357899999 78888
Q ss_pred EecCCeEEEEeCCCCCCCceeeec---cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
+.....|++||+|.-..-....+. ......+.|.|+| +|.+|+.++..+.+++.|.-. |..+.++.++..
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~------G~~~~tfs~~~~ 230 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFD------GTVKSTFSGYPN 230 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccC------CcEeeeEeeccC
Confidence 888889999999986422222222 4467889999999 999999999999999999988 778888877654
Q ss_pred cE---EEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC-C-CCceeEEEecCCCeeeecC
Q 011709 374 AV---LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-H-SPSSSIKFVLRESCLVDNN 448 (479)
Q Consensus 374 ~v---~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g-h-~~~~~~~~sp~~~~l~~~~ 448 (479)
.- ....|.|+++++ .+|+.||+|.+|+++++ .. +....| + ..+.++.|+|...++++++
T Consensus 231 ~~~~~~~a~ftPds~Fv-l~gs~dg~i~vw~~~tg-~~--------------v~~~~~~~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFV-LSGSDDGTIHVWNLETG-KK--------------VAVLRGPNGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred CCCcceeEEECCCCcEE-EEecCCCcEEEEEcCCC-cE--------------eeEecCCCCCCccccccCCceeeeeecC
Confidence 32 578899999975 59999999999999874 22 222333 2 3378899999999999988
Q ss_pred CCccccceeEEEEeec
Q 011709 449 HGLSYANKKIKIYCHL 464 (479)
Q Consensus 449 ~~~~~~d~~i~i~~~~ 464 (479)
. .+..|...
T Consensus 295 s-------~l~fw~p~ 303 (311)
T KOG1446|consen 295 S-------NLVFWLPD 303 (311)
T ss_pred c-------eEEEEecc
Confidence 7 67777544
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1e-24 Score=180.35 Aligned_cols=243 Identities=18% Similarity=0.225 Sum_probs=188.6
Q ss_pred eCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEe-cCCCCcEEEEEeCCCcEEEEECC
Q 011709 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRE-LPQNTKIVATHTDSPDVLIWDVE 171 (479)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~p~~~~~lat~s~dg~i~iwd~~ 171 (479)
++++.+..++|...... .+...+..+.+|.|+|..+.| +|.-+.+||+++.||.|.||.-+
T Consensus 27 ATcsSD~tVkIf~v~~n------------------~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 27 ATCSSDGTVKIFEVRNN------------------GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred eeecCCccEEEEEEcCC------------------CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 34557778887765421 112236677899999999998 45688999999999999999998
Q ss_pred CCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCcee
Q 011709 172 AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 249 (479)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (479)
.+ ..........|..+ |++++|.|. |-.|++++.||.|.|.+.+....
T Consensus 89 ~g----------~w~k~~e~~~h~~S-VNsV~wapheygl~LacasSDG~vsvl~~~~~g~------------------- 138 (299)
T KOG1332|consen 89 NG----------RWTKAYEHAAHSAS-VNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG------------------- 138 (299)
T ss_pred CC----------chhhhhhhhhhccc-ceeecccccccceEEEEeeCCCcEEEEEEcCCCC-------------------
Confidence 87 33455667888875 899999997 55899999999999999875311
Q ss_pred ecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC---C----------CcEEEEEecCCeEEEEeCCCCCCCce
Q 011709 250 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS---S----------AQEFCSVGDDSCLILWDARVGTSPVI 316 (479)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~----------~~~l~s~~~dg~i~iwd~~~~~~~~~ 316 (479)
.........|.-.|+++.|.|. | ...|++|+.|..|+||+....+..+.
T Consensus 139 ------------------w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e 200 (299)
T KOG1332|consen 139 ------------------WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE 200 (299)
T ss_pred ------------------ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh
Confidence 0111455679999999999985 2 13599999999999999999876667
Q ss_pred eeeccCCCCeEEEEecCCC---CcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeC
Q 011709 317 KVEKAHDADLHCVDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 393 (479)
Q Consensus 317 ~~~~~~~~~v~~l~~sp~~---~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~ 393 (479)
.++.+|...|..++|.|.. ..+||+++.||+|.||-.+...+.-..++ +......+..+.|+..|. +|+.++.
T Consensus 201 ~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl---l~~f~~~~w~vSWS~sGn-~LaVs~G 276 (299)
T KOG1332|consen 201 RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL---LEEFPDVVWRVSWSLSGN-ILAVSGG 276 (299)
T ss_pred hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc---cccCCcceEEEEEecccc-EEEEecC
Confidence 7789999999999999943 36899999999999998874322111223 333567899999999999 6888888
Q ss_pred CCCEEEEeCCCC
Q 011709 394 DGLLNIWDYEKV 405 (479)
Q Consensus 394 Dg~v~iwd~~~~ 405 (479)
|..|.+|.-...
T Consensus 277 dNkvtlwke~~~ 288 (299)
T KOG1332|consen 277 DNKVTLWKENVD 288 (299)
T ss_pred CcEEEEEEeCCC
Confidence 999999986553
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=3.5e-25 Score=200.43 Aligned_cols=258 Identities=21% Similarity=0.315 Sum_probs=204.6
Q ss_pred eeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEecc-CCCceeeeeecCCCCc
Q 011709 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNAEFALAMCPTEPY 210 (479)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~v~~l~~s~~~~~ 210 (479)
+.+.++.|..-|.++..+. ..+.+.||+. |.|+|||+.....+ .++..+..- .++-+.++...|||+.
T Consensus 411 rq~~tL~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k---------~PvsqLdcl~rdnyiRSckL~pdgrt 479 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNK---------SPVSQLDCLNRDNYIRSCKLLPDGRT 479 (705)
T ss_pred HhhhhhccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCC---------CccccccccCcccceeeeEecCCCce
Confidence 4567788988888888877 6668888875 68999999876333 333333322 3346889999999999
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
|++|+.-.++.|||+........ ..+......+++++.+||.
T Consensus 480 LivGGeastlsiWDLAapTprik--------------------------------------aeltssapaCyALa~spDa 521 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPTPRIK--------------------------------------AELTSSAPACYALAISPDA 521 (705)
T ss_pred EEeccccceeeeeeccCCCcchh--------------------------------------hhcCCcchhhhhhhcCCcc
Confidence 99999999999999975433211 2222333467889999998
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC----------
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG---------- 360 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~---------- 360 (479)
++.++|..||.|.|||+++.. +++.+.+|...+.||.+++ +|..|.||+-|.+||.||+|......
T Consensus 522 -kvcFsccsdGnI~vwDLhnq~--~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfS 597 (705)
T KOG0639|consen 522 -KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFS 597 (705)
T ss_pred -ceeeeeccCCcEEEEEcccce--eeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhhee
Confidence 789999999999999999988 8999999999999999999 99999999999999999999732100
Q ss_pred ------------------------CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC
Q 011709 361 ------------------------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 416 (479)
Q Consensus 361 ------------------------~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~ 416 (479)
.+...+.+..|...|.++.|.+.|++ |++.+.|.-+..|...-+
T Consensus 598 Lg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtPyG----------- 665 (705)
T KOG0639|consen 598 LGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYG----------- 665 (705)
T ss_pred cccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCce-eeecCchhhhhhccCccc-----------
Confidence 11222344568889999999999996 789999999999987764
Q ss_pred CCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 417 NYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 417 ~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
.-+|...-..+|.++..+.|++++++|+. |++..+|.+
T Consensus 666 ----asiFqskE~SsVlsCDIS~ddkyIVTGSG-----dkkATVYeV 703 (705)
T KOG0639|consen 666 ----ASIFQSKESSSVLSCDISFDDKYIVTGSG-----DKKATVYEV 703 (705)
T ss_pred ----cceeeccccCcceeeeeccCceEEEecCC-----CcceEEEEE
Confidence 44666666677999999999999999998 888888865
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.1e-25 Score=206.03 Aligned_cols=244 Identities=21% Similarity=0.280 Sum_probs=197.3
Q ss_pred CCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCC
Q 011709 94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 173 (479)
Q Consensus 94 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~ 173 (479)
+|+-+..|.+|....... ++..+ ...++..|.+.|+.+.... +++.|+++|.|-+|++|+....
T Consensus 42 TgGRDg~i~~W~~~~d~~-------------~~s~~--~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSN-------------EPSTP--YIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKD 105 (735)
T ss_pred ecCCCceEEEeccccccC-------------Ccccc--hhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccC
Confidence 455788888887543211 11111 1455568999999998877 7889999999999999999877
Q ss_pred CCccccCCCCCCCCcEEEeccCCCceeeeee-cCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecC
Q 011709 174 PNRHAVLGATNSRPDLILTGHQDNAEFALAM-CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS 252 (479)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~-s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (479)
..-+..++..|.+ -|.|+++ .++...+||||-|+.|.+||++++........
T Consensus 106 ----------~~~c~stir~H~D-YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~---------------- 158 (735)
T KOG0308|consen 106 ----------NTFCMSTIRTHKD-YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASF---------------- 158 (735)
T ss_pred ----------cchhHhhhhcccc-hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhc----------------
Confidence 2256678889998 5899999 78888999999999999999987632100000
Q ss_pred CCCCCCCCCCCCCCCCCCceee-cCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEe
Q 011709 253 PKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 331 (479)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 331 (479)
.. .....+ .|+...|++++.++.+ ..|++|+..+.|++||.++.+ .+..+.+|...|.++..
T Consensus 159 -------------n~-~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~--kimkLrGHTdNVr~ll~ 221 (735)
T KOG0308|consen 159 -------------NN-VTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK--KIMKLRGHTDNVRVLLV 221 (735)
T ss_pred -------------cc-cccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccc--ceeeeeccccceEEEEE
Confidence 00 000112 2788999999999998 799999999999999999988 46667799999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 332 sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
++ +|..++++|+||+|++||+.. .+++.++..|...|.++..+|+-.+ +.+|+.||.|..=|+++.
T Consensus 222 ~d-DGt~~ls~sSDgtIrlWdLgq------QrCl~T~~vH~e~VWaL~~~~sf~~-vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 222 ND-DGTRLLSASSDGTIRLWDLGQ------QRCLATYIVHKEGVWALQSSPSFTH-VYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred cC-CCCeEeecCCCceEEeeeccc------cceeeeEEeccCceEEEeeCCCcce-EEecCCCCcEEecccCCc
Confidence 99 999999999999999999998 7899999999999999999999886 569999999999999985
No 114
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2.4e-24 Score=182.79 Aligned_cols=303 Identities=18% Similarity=0.224 Sum_probs=210.6
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccc--cCCCCCC-CCcEEEeccCCCceeeeeecCC-CCcE
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA--VLGATNS-RPDLILTGHQDNAEFALAMCPT-EPYV 211 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~--~~~~~~~-~~~~~~~~h~~~~v~~l~~s~~-~~~l 211 (479)
...|.|.|+++...+..++++++|+.||.|.|||++....... +.....+ .....-.+|.- .|..+.|-|- ...+
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky-~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKY-AISSAIWYPIDTGMF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCcccee-eeeeeEEeeecCcee
Confidence 3579999999999999999999999999999999987642211 0000000 01112245665 5889999994 5588
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccc-c---CCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAK-S---AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
.+++.|.+++|||.++.+....+...... . ......-...+.+..+..+++-|...+...+++.||...|.++.|+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 89999999999999987654443322211 1 1111111223445567788889999999999999999999999999
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCC-------------CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecC
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGT-------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~ 354 (479)
|..+.+|++|+.||.|++||+|.-. .|.+..-..|.+.|+.++|+. ++.++++++.|..+++|+..
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNME 276 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhhhccCccceEEeecc
Confidence 9998999999999999999998642 123333457889999999999 99999999999999999998
Q ss_pred CCCCCC--CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC-C
Q 011709 355 NLTSNG--VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS-P 431 (479)
Q Consensus 355 ~~~~~~--~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~-~ 431 (479)
+..... .++.++.-..|- .+. +. +-+.. +|+---.|+.+.++++-.+ +.+-...+|- .
T Consensus 277 ~G~ntl~~~g~~~~n~~~~~-~~~-~~-~~~s~-vfv~~p~~~~lall~~~sg---------------s~ir~l~~h~k~ 337 (397)
T KOG4283|consen 277 SGRNTLREFGPIIHNQTTSF-AVH-IQ-SMDSD-VFVLFPNDGSLALLNLLEG---------------SFVRRLSTHLKR 337 (397)
T ss_pred cCcccccccccccccccccc-eEE-Ee-ecccc-eEEEEecCCeEEEEEccCc---------------eEEEeeecccce
Confidence 743210 011111111111 111 22 22222 3444445677888887664 2233444553 3
Q ss_pred ceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 432 SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 432 ~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
+.+.++.|+-+.+.++.. |++|..|...
T Consensus 338 i~c~~~~~~fq~~~tg~~-----d~ni~~w~p~ 365 (397)
T KOG4283|consen 338 INCAAYRPDFEQCFTGDM-----NGNIYMWSPA 365 (397)
T ss_pred eeEEeecCchhhhhcccc-----CCcccccccc
Confidence 788889999999999988 9999999763
No 115
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.8e-24 Score=201.92 Aligned_cols=239 Identities=19% Similarity=0.365 Sum_probs=198.8
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceee-eeecC-CCCcEE
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA-LAMCP-TEPYVL 212 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~-l~~s~-~~~~l~ 212 (479)
...+|...|..++..+ +..++++|.||++++|+-... .......+.+|.+- |.+ +++-+ ++.+|+
T Consensus 9 ~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~----------~~l~~~~~~~~~g~-i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGK----------QYLETHAFEGPKGF-IANSICYAESDKGRLV 75 (745)
T ss_pred EeccCccchheeEecC--CeEEeecCCCCceeeeeccCc----------ccccceecccCcce-eeccceeccccCcceE
Confidence 4468999998888665 347999999999999998655 22334567777764 444 77775 445799
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+|+.|++|++|.... ..|+.++++|...|.++....++
T Consensus 76 ~g~~D~~i~v~~~~~----------------------------------------~~P~~~LkgH~snVC~ls~~~~~-- 113 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQ----------------------------------------AEPLYTLKGHKSNVCSLSIGEDG-- 113 (745)
T ss_pred eecccceEEEEecCC----------------------------------------CCchhhhhccccceeeeecCCcC--
Confidence 999999999998753 34558899999999999987776
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
.++|||.|.++++|-... +...+.+|+..|++++.-| .+ .++|||.|.+|++|.- ++.+.+|.+|.
T Consensus 114 ~~iSgSWD~TakvW~~~~----l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--------~~~l~tf~gHt 179 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRIGE----LVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--------GTLLKTFSGHT 179 (745)
T ss_pred ceEecccccceEEecchh----hhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--------Cchhhhhccch
Confidence 399999999999997654 4556889999999999998 44 8999999999999976 46889999999
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCc
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGL 451 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~ 451 (479)
+.|..+++-+++. |+|++.||.|++|++.. +.+..+.||+. +.+++..++++.++++|.
T Consensus 180 D~VRgL~vl~~~~--flScsNDg~Ir~w~~~g----------------e~l~~~~ghtn~vYsis~~~~~~~Ivs~gE-- 239 (745)
T KOG0301|consen 180 DCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG----------------EVLLEMHGHTNFVYSISMALSDGLIVSTGE-- 239 (745)
T ss_pred hheeeeEEecCCC--eEeecCCceEEEEeccC----------------ceeeeeeccceEEEEEEecCCCCeEEEecC--
Confidence 9999999999876 56999999999999954 56778889999 999998899999999999
Q ss_pred cccceeEEEEeecc
Q 011709 452 SYANKKIKIYCHLE 465 (479)
Q Consensus 452 ~~~d~~i~i~~~~~ 465 (479)
|+++++|...+
T Consensus 240 ---DrtlriW~~~e 250 (745)
T KOG0301|consen 240 ---DRTLRIWKKDE 250 (745)
T ss_pred ---CceEEEeecCc
Confidence 99999996553
No 116
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=5.1e-24 Score=191.08 Aligned_cols=263 Identities=16% Similarity=0.213 Sum_probs=200.0
Q ss_pred EecCCCceeEEEecCCCC-cEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEE
Q 011709 136 TIIHPGEVNRIRELPQNT-KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLS 213 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~-~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s 213 (479)
...|.+.|++++|+|... .++|+|..-|+|-+||+.+.+. ...-...+..|.. .|.+|.|+|.+. .+++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--------d~d~v~~f~~hs~-~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--------DKDGVYLFTPHSG-PVSGLKFSPANTSQIYS 252 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--------ccCceEEeccCCc-cccceEecCCChhheee
Confidence 346889999999999655 7999999999999999964321 1234566788886 599999999754 8999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
.|.||+|++-|++...... +..+......+.++.|+.+.. .
T Consensus 253 sSyDGtiR~~D~~~~i~e~--------------------------------------v~s~~~d~~~fs~~d~~~e~~-~ 293 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEE--------------------------------------VLSLDTDNIWFSSLDFSAESR-S 293 (498)
T ss_pred eccCceeeeeeecchhhHH--------------------------------------HhhcCccceeeeeccccCCCc-c
Confidence 9999999999998643321 111222345677888888774 4
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
++.+..=|.+.+||+|++... ...+.-|...|.+|+++|....+|||+|.|++.+|||+|...... .|+.....|..
T Consensus 294 vl~~~~~G~f~~iD~R~~~s~-~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~--sp~lst~~Hrr 370 (498)
T KOG4328|consen 294 VLFGDNVGNFNVIDLRTDGSE-YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA--SPFLSTLPHRR 370 (498)
T ss_pred EEEeecccceEEEEeecCCcc-chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC--Ccceecccccc
Confidence 666666679999999998742 444557888999999999889999999999999999999876321 13445556999
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC----CceeEEEecCCCeeeecCC
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS----PSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~----~~~~~~~sp~~~~l~~~~~ 449 (479)
.|.+..|||.+.. |++.+.|..|+|||..-.+.. .+|.....|...+ ......|.|+..+++.+..
T Consensus 371 sV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~---------~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~ 440 (498)
T KOG4328|consen 371 SVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAK---------DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY 440 (498)
T ss_pred eeeeeEEcCCCCc-eEeeccCCceEEeeccccccc---------CCccceeeccCcccccccchhheeCCCccEEEEecc
Confidence 9999999999997 679999999999998522211 2234445555444 3678999999999999887
Q ss_pred CccccceeEEEEeec
Q 011709 450 GLSYANKKIKIYCHL 464 (479)
Q Consensus 450 ~~~~~d~~i~i~~~~ 464 (479)
-..|.+|+..
T Consensus 441 -----~r~IDv~~~~ 450 (498)
T KOG4328|consen 441 -----PRPIDVFDGN 450 (498)
T ss_pred -----CcceeEEcCC
Confidence 6678888644
No 117
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.7e-23 Score=166.77 Aligned_cols=227 Identities=23% Similarity=0.374 Sum_probs=174.3
Q ss_pred ceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccc-------------------------------
Q 011709 130 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA------------------------------- 178 (479)
Q Consensus 130 ~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~------------------------------- 178 (479)
.+...+...|.|.|.|.+|+| .+.+||+|++|.+|++--+....+...
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred eEEeeeccccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence 344456678999999999999 999999999999999976654332211
Q ss_pred ---------cCCCCCCCCcEEEeccCCCceeee-eecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCce
Q 011709 179 ---------VLGATNSRPDLILTGHQDNAEFAL-AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI 248 (479)
Q Consensus 179 ---------~~~~~~~~~~~~~~~h~~~~v~~l-~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 248 (479)
+......+....+.||++. |.++ .| +|-.+++|+.|.+|++||++-..+......
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sghtgh-ilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~------------ 222 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHTGH-ILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDN------------ 222 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCccc-EEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccC------------
Confidence 0111223455678889875 5444 45 467899999999999999975433211111
Q ss_pred eecCCCCCCCCCCCCCCCCCCCceeecC---CCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCC
Q 011709 249 IKQSPKPGDGNDKAADGPSVGPRGIYNG---HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD 325 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 325 (479)
.+.+ ....|.+++..|.| ++|++|..|....+||+|.++ .++.+..|...
T Consensus 223 ------------------------~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r--~iq~f~phsad 275 (350)
T KOG0641|consen 223 ------------------------DFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGR--MIQRFHPHSAD 275 (350)
T ss_pred ------------------------cccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCc--eeeeeCCCccc
Confidence 0111 24579999999999 799999999999999999998 78888999999
Q ss_pred eEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCC
Q 011709 326 LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 326 v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~ 403 (479)
|.|+.|+| ...|+++++.|..|++-|++..-.. .-++.....|...+..+.|+|..-. |++.+.|.++.+|-+.
T Consensus 276 ir~vrfsp-~a~yllt~syd~~ikltdlqgdla~--el~~~vv~ehkdk~i~~rwh~~d~s-fisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 276 IRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAH--ELPIMVVAEHKDKAIQCRWHPQDFS-FISSSADKTATLWALN 349 (350)
T ss_pred eeEEEeCC-CceEEEEecccceEEEeecccchhh--cCceEEEEeccCceEEEEecCccce-eeeccCcceEEEeccC
Confidence 99999999 9999999999999999999742100 1345556679999999999999875 6799999999999764
No 118
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=188.20 Aligned_cols=283 Identities=13% Similarity=0.222 Sum_probs=208.4
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecCCC
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDK 218 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~dg 218 (479)
.+.|++|.|+| ...+|.+|+.||+++||.++... ...+..+.-.. .+|.+.+|.|+|. .+++++...
T Consensus 213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~----------N~~lqS~~l~~-fPi~~a~f~p~G~~~i~~s~rrk 280 (514)
T KOG2055|consen 213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKV----------NPKLQSIHLEK-FPIQKAEFAPNGHSVIFTSGRRK 280 (514)
T ss_pred cCCceEEEecC-CCceEEEecCCCcEEEEEecCcc----------Chhheeeeecc-CccceeeecCCCceEEEecccce
Confidence 37899999999 77799999999999999998762 22333333333 4689999999998 899999999
Q ss_pred cEEEEecCCCccccccCCcccc-------cCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 219 SVVLWSIQDHITSSATDPATAK-------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
.+..||+.+.+......+.... ..+.....+ ......+.+.+....+...+..++ -.+.|.+++|+.++
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fi--a~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSds- 356 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFI--AIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDS- 356 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeE--EEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCC-
Confidence 9999999877554333322211 111122222 222334555555556666555555 35679999999998
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCC--eEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD--LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
..|++++.+|.|.+||++... +++.+. ..+. -++++.++ ++.|||+|+..|.|.|||..+.-.....+|+..+.
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~--~~~rf~-D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNS--CLHRFV-DDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred cEEEEEcCCceEEEEecCCcc--eEEEEe-ecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 678888889999999999987 566553 2233 35677788 89999999999999999987654444468899888
Q ss_pred CCCCcEEEEEEecCCCcEEEEEeC--CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeC----CC-CCceeEEEecCCC
Q 011709 370 GHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA----GH-SPSSSIKFVLRES 442 (479)
Q Consensus 370 ~h~~~v~~l~~~p~~~~llas~s~--Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~----gh-~~~~~~~~sp~~~ 442 (479)
.-...|++++|+|+.+ |||.+|. +..+++-.+... .+|... +. .-+++++|+|.+.
T Consensus 433 NLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~----------------TVFsNfP~~n~~vg~vtc~aFSP~sG 495 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSC----------------TVFSNFPTSNTKVGHVTCMAFSPNSG 495 (514)
T ss_pred hhheeeeeeeeCcchh-hhhhhhhccccceEEEeccce----------------eeeccCCCCCCcccceEEEEecCCCc
Confidence 8889999999999998 6777775 678888887652 222211 11 1279999999999
Q ss_pred eeeecCCCccccceeEEEEeec
Q 011709 443 CLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 443 ~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
+++.|.. +|.+.+|...
T Consensus 496 ~lAvGNe-----~grv~l~kL~ 512 (514)
T KOG2055|consen 496 YLAVGNE-----AGRVHLFKLH 512 (514)
T ss_pred eEEeecC-----CCceeeEeec
Confidence 9999999 9999999753
No 119
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.2e-24 Score=215.60 Aligned_cols=260 Identities=16% Similarity=0.337 Sum_probs=200.7
Q ss_pred ecCCCceeEEEecCCCCc---EEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEE
Q 011709 137 IIHPGEVNRIRELPQNTK---IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVL 212 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~---~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~ 212 (479)
+.-...-++++|.+.... +||.|.+||.|.+||...-. .......+.+...|++ .|.+++|++.+. .||
T Consensus 61 ~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~------~~~~~~~la~~~~h~G-~V~gLDfN~~q~nlLA 133 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII------ANASEEVLATKSKHTG-PVLGLDFNPFQGNLLA 133 (1049)
T ss_pred ccccccceeeeecccCCCccceeeccccCCceEEecchhhc------cCcchHHHhhhcccCC-ceeeeeccccCCceee
Confidence 344556788999884444 69999999999999988631 1112345667888997 589999999865 999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+|+.||.|.|||++......... -......|.+++|+..-.+
T Consensus 134 SGa~~geI~iWDlnn~~tP~~~~--------------------------------------~~~~~~eI~~lsWNrkvqh 175 (1049)
T KOG0307|consen 134 SGADDGEILIWDLNKPETPFTPG--------------------------------------SQAPPSEIKCLSWNRKVSH 175 (1049)
T ss_pred ccCCCCcEEEeccCCcCCCCCCC--------------------------------------CCCCcccceEeccchhhhH
Confidence 99999999999998643321110 1123567999999998878
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeec-cCCCCeEEEEecCCCCcEEEEEeCCC---cEEEEecCCCCCCCCCCceeee
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
+|++++.+|.+.|||+|..+. ++.... .....+..++|+|.+...|++++.|. .|.+||+|... .+++++
T Consensus 176 ILAS~s~sg~~~iWDlr~~~p-ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-----sP~k~~ 249 (1049)
T KOG0307|consen 176 ILASGSPSGRAVIWDLRKKKP-IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-----SPLKIL 249 (1049)
T ss_pred HhhccCCCCCceeccccCCCc-ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-----Cchhhh
Confidence 999999999999999998862 333222 22345889999997777888887764 79999999853 789999
Q ss_pred cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCC-eeee
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRES-CLVD 446 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~-~l~~ 446 (479)
.+|...|.++.|++.+.++|+|++.|+.|.+|+.+++ +.+........ +..+.|.|... .+++
T Consensus 250 ~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---------------Evl~~~p~~~nW~fdv~w~pr~P~~~A~ 314 (1049)
T KOG0307|consen 250 EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---------------EVLGELPAQGNWCFDVQWCPRNPSVMAA 314 (1049)
T ss_pred cccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---------------eEeeecCCCCcceeeeeecCCCcchhhh
Confidence 9999999999999999778889999999999999984 44444444444 78999999887 5555
Q ss_pred cCCCccccceeEEEEeecccc
Q 011709 447 NNHGLSYANKKIKIYCHLEAL 467 (479)
Q Consensus 447 ~~~~~~~~d~~i~i~~~~~~~ 467 (479)
++- +|.|.||......
T Consensus 315 asf-----dgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 315 ASF-----DGKISIYSLQGTD 330 (1049)
T ss_pred hee-----ccceeeeeeecCC
Confidence 555 9999999765543
No 120
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=198.04 Aligned_cols=327 Identities=16% Similarity=0.215 Sum_probs=241.5
Q ss_pred chhhhhhhhccccccceeeEEecCC-cccCCCcceEEEEEEEeeCCCCCceEEEEEEEecC-------c-chhhhhcccc
Q 011709 51 VPVLYDWLANHNLVWPSLSCRWGPQ-LEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVK-------P-RVAAAEHISQ 121 (479)
Q Consensus 51 ~~~~y~~~~~~~l~wpsl~~~w~p~-~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~-------~-~~~~~~~~~~ 121 (479)
+-..|.+|.+....| .|+-.|. +... ..+.|--+.+++++++++|.+|+++.-. . +......+.-
T Consensus 359 vgk~~s~lyHS~ciW---~Ve~~p~nv~~~---~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y 432 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIW---DVENLPCNVHSP---TAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPY 432 (1080)
T ss_pred ccceeeeeeccceee---eeccccccccCc---ccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCcc
Confidence 445788899999999 6666663 2211 1244555667778899999999877511 1 1111111110
Q ss_pred cCc------ccCCCcee--eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEec
Q 011709 122 FNE------EARSPFVK--KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG 193 (479)
Q Consensus 122 ~~~------~~~~~~~~--~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 193 (479)
-+. +...+.+. ......-.-.|.+++.+| ++..||+|..-|+++||++... .....+..
T Consensus 433 ~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l------------~~~~~~eA 499 (1080)
T KOG1408|consen 433 EDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQEL------------EYTCFMEA 499 (1080)
T ss_pred ccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhh------------hhhhheec
Confidence 011 11122221 223445567899999999 9999999999999999999877 56667889
Q ss_pred cCCCceeeeeecCC---CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCC
Q 011709 194 HQDNAEFALAMCPT---EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (479)
Q Consensus 194 h~~~~v~~l~~s~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (479)
|.. .|.||.|+.- .++|++++.|..|.|+|+.. ...+
T Consensus 500 Hes-EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r---------------------------------------ny~l 539 (1080)
T KOG1408|consen 500 HES-EILCLEYSFPVLTNKLLASASRDRLIHVYDVKR---------------------------------------NYDL 539 (1080)
T ss_pred ccc-eeEEEeecCchhhhHhhhhccCCceEEEEeccc---------------------------------------ccch
Confidence 997 5999999863 46899999999999999963 3344
Q ss_pred ceeecCCCCceEEEEEeeCC-CcEEEEEecCCeEEEEeCCCCCCCceeee----ccCCCCeEEEEecCCCCcEEEEEeCC
Q 011709 271 RGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVE----KAHDADLHCVDWNPLDDNLILTGSAD 345 (479)
Q Consensus 271 ~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~l~~sp~~~~~l~tgs~d 345 (479)
++++.+|...|+++.|...| ...+++++.|..|.+ +............ ......++.++..| ...++++++.|
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQD 617 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQD 617 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecc
Confidence 57889999999999998765 346889999987764 4333111011111 12245688999999 89999999999
Q ss_pred CcEEEEecCCCCCCCCCCceeeec---CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCee
Q 011709 346 NSVRMFDRRNLTSNGVGSPINKFE---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL 422 (479)
Q Consensus 346 g~I~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l 422 (479)
+.|+|||+.+ ++....|+ +|.+....+...|.|-| +|+...|.++.++|+..+ +.
T Consensus 618 rnirif~i~s------gKq~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sg---------------Ec 675 (1080)
T KOG1408|consen 618 RNIRIFDIES------GKQVKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSG---------------EC 675 (1080)
T ss_pred cceEEEeccc------cceeeeecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccc---------------hh
Confidence 9999999999 78888886 46778889999999997 678888999999999884 44
Q ss_pred EEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 423 FFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 423 ~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
+....||.. |+.+.|.+|.+.|++.+. ||.|-+|....
T Consensus 676 vA~m~GHsE~VTG~kF~nDCkHlISvsg-----DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 676 VAQMTGHSEAVTGVKFLNDCKHLISVSG-----DGCIFVWKLPL 714 (1080)
T ss_pred hhhhcCcchheeeeeecccchhheeecC-----CceEEEEECch
Confidence 455668887 899999999999999999 99999996553
No 121
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=184.65 Aligned_cols=220 Identities=22% Similarity=0.339 Sum_probs=172.4
Q ss_pred eeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC-Cc
Q 011709 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PY 210 (479)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~-~~ 210 (479)
.+++.-+|.++=+.|.|+|.....|+||.--+.|++|...++.=. .-...+.+|+.+ |-.|+|||.. ..
T Consensus 203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~---------vd~~Pf~gH~~S-VEDLqWSptE~~v 272 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK---------VDQRPFTGHTKS-VEDLQWSPTEDGV 272 (440)
T ss_pred ceEEecccCccceeeecccccccccccCccccceEeeeeccCcee---------ecCccccccccc-hhhhccCCccCce
Confidence 367778999999999999966667889888899999999886211 223457789985 8999999985 48
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
|+|||.||+|+|||++.+.... . ...+.|.+.|+-+.|+...
T Consensus 273 faScS~DgsIrIWDiRs~~~~~-------------------------------------~-~~~kAh~sDVNVISWnr~~ 314 (440)
T KOG0302|consen 273 FASCSCDGSIRIWDIRSGPKKA-------------------------------------A-VSTKAHNSDVNVISWNRRE 314 (440)
T ss_pred EEeeecCceEEEEEecCCCccc-------------------------------------e-eEeeccCCceeeEEccCCc
Confidence 9999999999999998653321 1 2336799999999999988
Q ss_pred CcEEEEEecCCeEEEEeCCCCC-CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCC------CC-C
Q 011709 291 AQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------GV-G 362 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~------~~-~ 362 (479)
+ +|++|++||+++|||+|+-+ ...+..++-|..+|++|.|+|.....|++++.|..|.|||+..-... .. +
T Consensus 315 ~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~ 393 (440)
T KOG0302|consen 315 P-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG 393 (440)
T ss_pred c-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc
Confidence 5 89999999999999999855 23566778999999999999988999999999999999999753320 00 0
Q ss_pred ---CceeeecCC--CCcEEEEEEecCCCcEEEEEeCCCCEEEEe
Q 011709 363 ---SPINKFEGH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 363 ---~~~~~~~~h--~~~v~~l~~~p~~~~llas~s~Dg~v~iwd 401 (479)
-|.+-+.-| ...+.-+.|++.-+.++++.+.|| +.||-
T Consensus 394 L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 394 LQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 111222224 347889999999888899999998 55653
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=4.9e-23 Score=193.64 Aligned_cols=237 Identities=19% Similarity=0.323 Sum_probs=194.1
Q ss_pred EEEecCCCceeE-EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 134 HKTIIHPGEVNR-IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 134 ~~~~~h~~~V~~-l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
....+|.+-|.. ++|.+.++-.|++|+.|++|.+|..... .+..++.||... |.|++...++. |+
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~------------~P~~~LkgH~sn-VC~ls~~~~~~-~i 116 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA------------EPLYTLKGHKSN-VCSLSIGEDGT-LI 116 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCC------------Cchhhhhccccc-eeeeecCCcCc-eE
Confidence 344567788877 8888756667999999999999999887 788999999985 88998887776 99
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
|||+|.++++|.+.. ....+.+|+..|.+++.-|.+
T Consensus 117 SgSWD~TakvW~~~~------------------------------------------l~~~l~gH~asVWAv~~l~e~-- 152 (745)
T KOG0301|consen 117 SGSWDSTAKVWRIGE------------------------------------------LVYSLQGHTASVWAVASLPEN-- 152 (745)
T ss_pred ecccccceEEecchh------------------------------------------hhcccCCcchheeeeeecCCC--
Confidence 999999999997753 124578999999999999987
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
.++||+.|.+|++|.- ++ +++++.+|..-|..+++-+ +..|++++.||.|++|++. +..+.++.+|+
T Consensus 153 ~~vTgsaDKtIklWk~--~~--~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~-------ge~l~~~~ght 219 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKG--GT--LLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLD-------GEVLLEMHGHT 219 (745)
T ss_pred cEEeccCcceeeeccC--Cc--hhhhhccchhheeeeEEec--CCCeEeecCCceEEEEecc-------Cceeeeeeccc
Confidence 6999999999999975 33 6788899999999999986 4578999999999999995 68999999999
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCcc
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLS 452 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~ 452 (479)
.-|+++....++. +++|+|.|++++||+...- .-...+++ +.+.++.+-++|..+ +|+.
T Consensus 220 n~vYsis~~~~~~-~Ivs~gEDrtlriW~~~e~---------------~q~I~lPt-tsiWsa~~L~NgDIv-vg~S--- 278 (745)
T KOG0301|consen 220 NFVYSISMALSDG-LIVSTGEDRTLRIWKKDEC---------------VQVITLPT-TSIWSAKVLLNGDIV-VGGS--- 278 (745)
T ss_pred eEEEEEEecCCCC-eEEEecCCceEEEeecCce---------------EEEEecCc-cceEEEEEeeCCCEE-Eecc---
Confidence 9999999666666 6789999999999997632 11233332 346777777776654 5556
Q ss_pred ccceeEEEEeec
Q 011709 453 YANKKIKIYCHL 464 (479)
Q Consensus 453 ~~d~~i~i~~~~ 464 (479)
||.|++|...
T Consensus 279 --DG~VrVfT~~ 288 (745)
T KOG0301|consen 279 --DGRVRVFTVD 288 (745)
T ss_pred --CceEEEEEec
Confidence 6899999654
No 123
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=9.6e-25 Score=205.86 Aligned_cols=196 Identities=22% Similarity=0.387 Sum_probs=174.1
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
....+|.++|-+|.|++ ...+|++|+.+|+|++||++.. +...+|.||... +..++|+|-+.+.++
T Consensus 64 ~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeA------------k~vrtLtgh~~~-~~sv~f~P~~~~~a~ 129 (825)
T KOG0267|consen 64 TSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEA------------KIVRTLTGHLLN-ITSVDFHPYGEFFAS 129 (825)
T ss_pred heeeccCCcceeeecCc-chhhhcccccCCceeeeehhhh------------hhhhhhhccccC-cceeeeccceEEecc
Confidence 34679999999999999 7889999999999999999987 667789999985 789999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
|+.|+.+++||++... +.+.+.+|...|..+.|+|+| .+
T Consensus 130 gStdtd~~iwD~Rk~G----------------------------------------c~~~~~s~~~vv~~l~lsP~G-r~ 168 (825)
T KOG0267|consen 130 GSTDTDLKIWDIRKKG----------------------------------------CSHTYKSHTRVVDVLRLSPDG-RW 168 (825)
T ss_pred ccccccceehhhhccC----------------------------------------ceeeecCCcceeEEEeecCCC-ce
Confidence 9999999999997422 337788899999999999999 79
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
++++++|.++++||++.++ +...+..|.+.+.++.|+| ...++++|+.|++|++||+++ ...+........
T Consensus 169 v~~g~ed~tvki~d~~agk--~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dlet------fe~I~s~~~~~~ 239 (825)
T KOG0267|consen 169 VASGGEDNTVKIWDLTAGK--LSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLET------FEVISSGKPETD 239 (825)
T ss_pred eeccCCcceeeeecccccc--cccccccccccccccccCc-hhhhhccCCCCceeeeeccce------eEEeeccCCccC
Confidence 9999999999999999999 7888889999999999999 899999999999999999997 456666666788
Q ss_pred cEEEEEEecCCCcEEEEEeCC
Q 011709 374 AVLCVQWSPDKSSVFGSSAED 394 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~D 394 (479)
.|.+++|+|++.. +++|..+
T Consensus 240 ~v~~~~fn~~~~~-~~~G~q~ 259 (825)
T KOG0267|consen 240 GVRSLAFNPDGKI-VLSGEQI 259 (825)
T ss_pred CceeeeecCCcee-eecCchh
Confidence 9999999999984 5566543
No 124
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6e-23 Score=189.91 Aligned_cols=286 Identities=16% Similarity=0.166 Sum_probs=183.8
Q ss_pred eeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC--
Q 011709 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-- 209 (479)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-- 209 (479)
......+|++.|.+|...| .+.+||+|+.||+|+||.+.++ +++.+..-- +.|.|++|+|.+.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~Tg------------Rcvr~~~~d--~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATG------------RCVRTVQFD--SEIRSVAWNPLSDLC 456 (733)
T ss_pred eeeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecc------------eEEEEEeec--ceeEEEEecCCCCce
Confidence 3556779999999999999 9999999999999999999999 555544433 3699999999876
Q ss_pred cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCC----CceeecCCCC------
Q 011709 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG----PRGIYNGHED------ 279 (479)
Q Consensus 210 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~------ 279 (479)
.||++- ...+.+.+..-+................ ........+..|...... -+...-.|..
T Consensus 457 vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~-------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vt 528 (733)
T KOG0650|consen 457 VLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAP-------NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVT 528 (733)
T ss_pred eEEEEe-cCceEEeCccccchhhhcchhhhhhcCC-------CccCCcccceeechhhhhhhccceEEEEecCCccceee
Confidence 444444 4446666544331110000000000000 000000011111111000 0111122333
Q ss_pred ---------------------------------------ceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeec
Q 011709 280 ---------------------------------------TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320 (479)
Q Consensus 280 ---------------------------------------~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 320 (479)
.|.++.|+|..+. |+.++ ...|+|||+.... ++..+.
T Consensus 529 WHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~-lfVaT-q~~vRiYdL~kqe--lvKkL~ 604 (733)
T KOG0650|consen 529 WHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY-LFVAT-QRSVRIYDLSKQE--LVKKLL 604 (733)
T ss_pred eecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce-EEEEe-ccceEEEehhHHH--HHHHHh
Confidence 4555566665532 22222 2346666665544 444444
Q ss_pred cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEE
Q 011709 321 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 400 (479)
Q Consensus 321 ~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iw 400 (479)
.....|.+++.+| .|.-|+.|+.|+.+..||+... .++.+++..|...+++|+||+.-+ |||+|+.||++.|+
T Consensus 605 tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldls-----skPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 605 TGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLS-----SKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVF 677 (733)
T ss_pred cCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccC-----cchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEE
Confidence 5566789999999 8899999999999999999874 378999999999999999999998 79999999999999
Q ss_pred eCCCCCccccCCCCCCCCCCeeEEEeCCCCC-----ceeEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 401 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-----SSSIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 401 d~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-----~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
.-.-...... ++ . ---+-...||.. |.++.|+|...+|+++|. ||.|++|.
T Consensus 678 hg~VY~Dl~q----np-l-iVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA-----d~tirlfT 733 (733)
T KOG0650|consen 678 HGMVYNDLLQ----NP-L-IVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA-----DGTIRLFT 733 (733)
T ss_pred eeeeehhhhc----CC-c-eEeeeeccCceeecccceEeecccCCCceEEecCC-----CceEEeeC
Confidence 7443211111 11 0 011335566654 678889999999999999 99999984
No 125
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.1e-22 Score=171.07 Aligned_cols=276 Identities=16% Similarity=0.215 Sum_probs=188.6
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEE
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLS 213 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s 213 (479)
.+.+|.++|++++|+. +|..|||++.|++|+||++..-.... .+++..-..-. .-+.+.|.||.+ .+++
T Consensus 81 ~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~e-------Hr~~R~nve~d--hpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKE-------HRCIRQNVEYD--HPTRVVFAPDCKSVVVS 150 (420)
T ss_pred hhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhh-------hhHhhccccCC--CceEEEECCCcceEEEE
Confidence 3458999999999999 99999999999999999998642211 01211111111 136899999976 5566
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
+-...++++|.+.....-..... ..-+| ....-+.|.-.|.++-....+ .+
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~-----------------------~v~~D-----~~~f~~kh~v~~i~iGiA~~~-k~ 201 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHH-----------------------FVHID-----NLEFERKHQVDIINIGIAGNA-KY 201 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcc-----------------------ccccc-----ccccchhcccceEEEeecCCc-eE
Confidence 66777899998754321000000 00000 011223466677777776666 79
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC--CCCceeeecCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG--VGSPINKFEGH 371 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~--~~~~~~~~~~h 371 (479)
+++++.|..|.+||++ ++ .+.........-+..+.|| +|++|++++..-.|++|.+--..... .-..+.++++|
T Consensus 202 imsas~dt~i~lw~lk-Gq--~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH 277 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-GQ--LLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH 277 (420)
T ss_pred EEEecCCCcEEEEecC-Cc--eeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence 9999999999999999 55 5666666666677889999 99999999999999999975432211 12456788999
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC-CCCCeeEEEeCCCCCceeEEEecCCCeeeecCCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~-~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~ 450 (479)
...|..++|+|+.++ +++.|.||+++|||+.-. ....+..... .+| .+.+..-.....++.+|.|..|+....
T Consensus 278 ~saV~~~aFsn~S~r-~vtvSkDG~wriwdtdVr-Y~~~qDpk~Lk~g~---~pl~aag~~p~RL~lsP~g~~lA~s~g- 351 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTR-AVTVSKDGKWRIWDTDVR-YEAGQDPKILKEGS---APLHAAGSEPVRLELSPSGDSLAVSFG- 351 (420)
T ss_pred hhheeeeeeCCCcce-eEEEecCCcEEEeeccce-EecCCCchHhhcCC---cchhhcCCCceEEEeCCCCcEEEeecC-
Confidence 999999999999996 679999999999998762 2222211111 111 223333333568999999998887654
Q ss_pred ccccceeEEEEeec
Q 011709 451 LSYANKKIKIYCHL 464 (479)
Q Consensus 451 ~~~~d~~i~i~~~~ 464 (479)
.++++|+..
T Consensus 352 -----s~l~~~~se 360 (420)
T KOG2096|consen 352 -----SDLKVFASE 360 (420)
T ss_pred -----CceEEEEcc
Confidence 367777544
No 126
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=1.8e-22 Score=188.16 Aligned_cols=285 Identities=18% Similarity=0.313 Sum_probs=190.9
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YV 211 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l 211 (479)
....+.|.+.|..+.|.| ....|++++.|.++++||+.+.. ..-...+.||+.+ |.+++|.|.+. .|
T Consensus 93 lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~----------l~G~~~~~GH~~S-vkS~cf~~~n~~vF 160 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSR----------LVGGRLNLGHTGS-VKSECFMPTNPAVF 160 (720)
T ss_pred hcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccce----------eecceeecccccc-cchhhhccCCCcce
Confidence 345578999999999999 88899999999999999999872 1223358899985 89999999865 78
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEE---EEEee
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED---VTFCP 288 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~---l~~~~ 288 (479)
++|+.||.|.|||++-........... ...+.. ..+. .-.-...+.+.....+...|.+ +.+..
T Consensus 161 ~tGgRDg~illWD~R~n~~d~~e~~~~-~~~~~~----------n~~p--tpskp~~kr~~k~kA~s~ti~ssvTvv~fk 227 (720)
T KOG0321|consen 161 CTGGRDGEILLWDCRCNGVDALEEFDN-RIYGRH----------NTAP--TPSKPLKKRIRKWKAASNTIFSSVTVVLFK 227 (720)
T ss_pred eeccCCCcEEEEEEeccchhhHHHHhh-hhhccc----------cCCC--CCCchhhccccccccccCceeeeeEEEEEe
Confidence 899999999999997543211000000 000000 0000 0000000111222334444444 44445
Q ss_pred CCCcEEEEEec-CCeEEEEeCCCCCCCc------eeeeccC---CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCC
Q 011709 289 SSAQEFCSVGD-DSCLILWDARVGTSPV------IKVEKAH---DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (479)
Q Consensus 289 ~~~~~l~s~~~-dg~i~iwd~~~~~~~~------~~~~~~~---~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~ 358 (479)
|. ..|++++. |+.|++||+|...... ...+..| ...+.++.... .|.+|++.+.|+.|++|+++...
T Consensus 228 De-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s- 304 (720)
T KOG0321|consen 228 DE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLS- 304 (720)
T ss_pred cc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccC-
Confidence 55 57888887 9999999999865211 1111122 34677888877 77888888889999999999866
Q ss_pred CCCCCceeeecCCCCc--EEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeE
Q 011709 359 NGVGSPINKFEGHSAA--VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSI 435 (479)
Q Consensus 359 ~~~~~~~~~~~~h~~~--v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~ 435 (479)
..++..+.++... -..-..+|++.+ +++|+.|....+|.+.... +-.....||.. |+++
T Consensus 305 ---~sP~~~~sg~~~~sf~vks~lSpd~~~-l~SgSsd~~ayiw~vs~~e--------------~~~~~l~Ght~eVt~V 366 (720)
T KOG0321|consen 305 ---ISPVAEFSGKLNSSFYVKSELSPDDCS-LLSGSSDEQAYIWVVSSPE--------------APPALLLGHTREVTTV 366 (720)
T ss_pred ---cCchhhccCcccceeeeeeecCCCCce-EeccCCCcceeeeeecCcc--------------CChhhhhCcceEEEEE
Confidence 4667766665432 122346899997 5699999999999998741 11234567776 9999
Q ss_pred EEecCC-CeeeecCCCccccceeEEEEeeccccc
Q 011709 436 KFVLRE-SCLVDNNHGLSYANKKIKIYCHLEALK 468 (479)
Q Consensus 436 ~~sp~~-~~l~~~~~~~~~~d~~i~i~~~~~~~~ 468 (479)
+|.|.. .-++++++ |..+++|+....+.
T Consensus 367 ~w~pS~~t~v~TcSd-----D~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 367 RWLPSATTPVATCSD-----DFRVKIWRLSNGLE 395 (720)
T ss_pred eeccccCCCceeecc-----CcceEEEeccCchh
Confidence 998753 34555577 99999998866554
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.9e-22 Score=171.54 Aligned_cols=240 Identities=18% Similarity=0.248 Sum_probs=182.2
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
....+.|..++.+++|.+ ...+++|+.||.|+.+|+.++. ...+..|.. +|.||.+++-...++
T Consensus 47 l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~-------------~~~igth~~-~i~ci~~~~~~~~vI 110 (323)
T KOG1036|consen 47 LKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGN-------------EDQIGTHDE-GIRCIEYSYEVGCVI 110 (323)
T ss_pred hhhheecCCceeeeeccC--CceEEEeccCceEEEEEecCCc-------------ceeeccCCC-ceEEEEeeccCCeEE
Confidence 445678999999999987 4478999999999999999872 234555665 699999999888999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+||+|++|++||.+..... ..+. ....|.++... + +
T Consensus 111 sgsWD~~ik~wD~R~~~~~----------------------------------------~~~d-~~kkVy~~~v~--g-~ 146 (323)
T KOG1036|consen 111 SGSWDKTIKFWDPRNKVVV----------------------------------------GTFD-QGKKVYCMDVS--G-N 146 (323)
T ss_pred EcccCccEEEEeccccccc----------------------------------------cccc-cCceEEEEecc--C-C
Confidence 9999999999999752211 1111 23378888775 3 5
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
.|+.|+.|..|.+||+|+...+.......-...+.||++-| ++.-++.++-||.|.+=.+...... ...-..|+.|.
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~--~skkyaFkCHr 223 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEA--QSKKYAFKCHR 223 (323)
T ss_pred EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHH--hhhceeEEeee
Confidence 68999999999999999988655444556677899999999 7788899999999998766653110 12334455554
Q ss_pred C---------cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCe
Q 011709 373 A---------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESC 443 (479)
Q Consensus 373 ~---------~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~ 443 (479)
. +|++|+|+|-.. .||||+.||.|.+||+... +.+.+ -+.-..+|.+++|+.+|.+
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~r-Krl~q-------------~~~~~~SI~slsfs~dG~~ 288 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNR-KRLKQ-------------LAKYETSISSLSFSMDGSL 288 (323)
T ss_pred cccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcch-hhhhh-------------ccCCCCceEEEEeccCCCe
Confidence 2 799999999977 5899999999999999873 22211 1222255899999999999
Q ss_pred eeecCCC
Q 011709 444 LVDNNHG 450 (479)
Q Consensus 444 l~~~~~~ 450 (479)
||.+...
T Consensus 289 LAia~sy 295 (323)
T KOG1036|consen 289 LAIASSY 295 (323)
T ss_pred EEEEech
Confidence 9998763
No 128
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.4e-22 Score=190.60 Aligned_cols=310 Identities=19% Similarity=0.249 Sum_probs=213.8
Q ss_pred ceeeEEEecCCCceeEEEecCCC--CcEEEEEeCCCcEEEEECCCCCCcc----c----cCCCCC-CC----------Cc
Q 011709 130 FVKKHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRH----A----VLGATN-SR----------PD 188 (479)
Q Consensus 130 ~~~~~~~~~h~~~V~~l~~~p~~--~~~lat~s~dg~i~iwd~~~~~~~~----~----~~~~~~-~~----------~~ 188 (479)
+-......+|.+.|.+|+|.... .-+||++|.|..||||.+.-..... . ...... .. ..
T Consensus 181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence 34456778999999999998753 4589999999999999876543111 0 000000 00 11
Q ss_pred EEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCcccc----ccCCcccccCCCCCceeecCC------CCCCC
Q 011709 189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS----ATDPATAKSAGSSGSIIKQSP------KPGDG 258 (479)
Q Consensus 189 ~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~------~~~~~ 258 (479)
..+.||.+ .|+++.|+|.+..|++++.|.++.+|...+..-.- ...... -...+......... ....+
T Consensus 261 all~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-g~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 261 ALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-GSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccc-ccccceeeEEEcCCCCEEEEecccC
Confidence 23459998 59999999999999999999999999876541100 000000 00111111111111 11233
Q ss_pred CCCCCC---CCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCC----------------------
Q 011709 259 NDKAAD---GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS---------------------- 313 (479)
Q Consensus 259 ~~~~~~---~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------------- 313 (479)
...+|. .........+.||...|.+++|+|.| .+|++++.|.+-|++---..+.
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn 417 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN 417 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccccceeeehcc
Confidence 344444 22234445678999999999999999 5889999998877764320000
Q ss_pred --------------------------------------------------------------------------------
Q 011709 314 -------------------------------------------------------------------------------- 313 (479)
Q Consensus 314 -------------------------------------------------------------------------------- 313 (479)
T Consensus 418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p 497 (764)
T KOG1063|consen 418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP 497 (764)
T ss_pred CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence
Q ss_pred ------------------CceeeeccCCCCeEEEEecCCCCcEEEEEeCCC-----cEEEEecCCCCCCCCCCceeeecC
Q 011709 314 ------------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-----SVRMFDRRNLTSNGVGSPINKFEG 370 (479)
Q Consensus 314 ------------------~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg-----~I~iwd~~~~~~~~~~~~~~~~~~ 370 (479)
|-++.+.+|...|.+++.+| +++++|+++... .|++|+..+ ...+..+.+
T Consensus 498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~------W~~~~~L~~ 570 (764)
T KOG1063|consen 498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN------WLQVQELEG 570 (764)
T ss_pred hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc------hhhhheecc
Confidence 11123357889999999999 999999998754 599999998 677788999
Q ss_pred CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCC
Q 011709 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~ 449 (479)
|.-.|+.++|+|++++ |++.|.|+++.+|..... ..... . +-....|+. |-++.|+|++.++++++.
T Consensus 571 HsLTVT~l~FSpdg~~-LLsvsRDRt~sl~~~~~~-~~~e~---------~-fa~~k~HtRIIWdcsW~pde~~FaTaSR 638 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGRY-LLSVSRDRTVSLYEVQED-IKDEF---------R-FACLKAHTRIIWDCSWSPDEKYFATASR 638 (764)
T ss_pred cceEEEEEEECCCCcE-EEEeecCceEEeeeeecc-cchhh---------h-hccccccceEEEEcccCcccceeEEecC
Confidence 9999999999999997 459999999999998652 11100 0 112456777 789999999999999999
Q ss_pred CccccceeEEEEeeccc
Q 011709 450 GLSYANKKIKIYCHLEA 466 (479)
Q Consensus 450 ~~~~~d~~i~i~~~~~~ 466 (479)
|++|++|.....
T Consensus 639 -----DK~VkVW~~~~~ 650 (764)
T KOG1063|consen 639 -----DKKVKVWEEPDL 650 (764)
T ss_pred -----CceEEEEeccCc
Confidence 999999965544
No 129
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=6.9e-22 Score=169.27 Aligned_cols=241 Identities=15% Similarity=0.270 Sum_probs=181.9
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCc
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~ 219 (479)
.+.|.+|.|+| .+..|+.++.||++++||+.... .. ....|.. ++.+++|.++ ..+++|+.||.
T Consensus 13 ~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~------------l~-~~~~~~~-plL~c~F~d~-~~~~~G~~dg~ 76 (323)
T KOG1036|consen 13 EDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANS------------LK-LKFKHGA-PLLDCAFADE-STIVTGGLDGQ 76 (323)
T ss_pred hhceeeEEEcC-cCCcEEEEeccCcEEEEeccchh------------hh-hheecCC-ceeeeeccCC-ceEEEeccCce
Confidence 46799999998 55566666799999999998762 11 1223443 6899999874 57899999999
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
|+++|++++.. ..+-.|...|.++.+++.. ..+++|+.
T Consensus 77 vr~~Dln~~~~-----------------------------------------~~igth~~~i~ci~~~~~~-~~vIsgsW 114 (323)
T KOG1036|consen 77 VRRYDLNTGNE-----------------------------------------DQIGTHDEGIRCIEYSYEV-GCVISGSW 114 (323)
T ss_pred EEEEEecCCcc-----------------------------------------eeeccCCCceEEEEeeccC-CeEEEccc
Confidence 99999987543 3455699999999999765 67999999
Q ss_pred CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee-cCCCCcEEEE
Q 011709 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCV 378 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l 378 (479)
|++|++||.|... ....+. ....|.++.. .++.|+.|+.|..|.+||+|+.. .+.+.. ..-.-.+.+|
T Consensus 115 D~~ik~wD~R~~~--~~~~~d-~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~-----~~~q~reS~lkyqtR~v 183 (323)
T KOG1036|consen 115 DKTIKFWDPRNKV--VVGTFD-QGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLD-----EPFQRRESSLKYQTRCV 183 (323)
T ss_pred CccEEEEeccccc--cccccc-cCceEEEEec---cCCEEEEeecCceEEEEEccccc-----chhhhccccceeEEEEE
Confidence 9999999999855 344443 3448999988 46889999999999999999964 222211 2234478899
Q ss_pred EEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC----------ceeEEEecCCCeeeecC
Q 011709 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP----------SSSIKFVLRESCLVDNN 448 (479)
Q Consensus 379 ~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~----------~~~~~~sp~~~~l~~~~ 448 (479)
++-|++.. +|.+|-||.|.+=.+.....- ....|...+|.. |.+++|+|--+.|++||
T Consensus 184 ~~~pn~eG-y~~sSieGRVavE~~d~s~~~-----------~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG 251 (323)
T KOG1036|consen 184 ALVPNGEG-YVVSSIEGRVAVEYFDDSEEA-----------QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG 251 (323)
T ss_pred EEecCCCc-eEEEeecceEEEEccCCchHH-----------hhhceeEEeeecccCCceEEEEeceeEeccccceEEecC
Confidence 99998776 679999999988766652111 122344444432 68999999999999999
Q ss_pred CCccccceeEEEEeeccc
Q 011709 449 HGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 449 ~~~~~~d~~i~i~~~~~~ 466 (479)
. ||.|.+|+.-.+
T Consensus 252 s-----DG~V~~Wd~~~r 264 (323)
T KOG1036|consen 252 S-----DGIVNIWDLFNR 264 (323)
T ss_pred C-----CceEEEccCcch
Confidence 9 999999986554
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=173.77 Aligned_cols=291 Identities=13% Similarity=0.143 Sum_probs=198.9
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
..+.|.. -+|+.|++ .|.+||.|..||.|.|||+.+- .....+.+|.. +|.+++||++|+.|+++
T Consensus 19 ~tld~~~-a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~------------~iar~lsaH~~-pi~sl~WS~dgr~Llts 83 (405)
T KOG1273|consen 19 HTLDNPL-AECCQFSR-WGDYLAVGCANGRVVIYDFDTF------------RIARMLSAHVR-PITSLCWSRDGRKLLTS 83 (405)
T ss_pred eeccCCc-cceEEecc-CcceeeeeccCCcEEEEEcccc------------chhhhhhcccc-ceeEEEecCCCCEeeee
Confidence 3455555 78999999 9999999999999999999987 55667889997 69999999999999999
Q ss_pred cCCCcEEEEecCCCccccccCCcccc-----cCCCCCceeecCCCCCCCCCCCCCCCCCCCceee-cCC-CCceEEEEEe
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATAK-----SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGH-EDTVEDVTFC 287 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~l~~~ 287 (479)
|.|..|.+||+..+............ .+.....++....... ..+...+.+....+..- .+. ...-.+..|.
T Consensus 84 S~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 84 SRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred cCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCcccccccccccccc
Confidence 99999999999887653332221111 0111111111111111 00000110000000000 000 0111223577
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCC-CCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC---CCC
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG---VGS 363 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~---~~~ 363 (479)
+.| .++++|...|.+.++|..+.+ ++..+.... ..|..+.++. .+..|+.-+.|+.||.|+++.....+ ..+
T Consensus 163 r~g-~yIitGtsKGkllv~~a~t~e--~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e 238 (405)
T KOG1273|consen 163 RRG-KYIITGTSKGKLLVYDAETLE--CVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVE 238 (405)
T ss_pred CCC-CEEEEecCcceEEEEecchhe--eeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcC
Confidence 777 789999999999999999987 566555444 7889999998 99999999999999999998543221 112
Q ss_pred ceeeecC--CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC--ceeEEEec
Q 011709 364 PINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP--SSSIKFVL 439 (479)
Q Consensus 364 ~~~~~~~--h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~--~~~~~~sp 439 (479)
+.+++.. ....-.+++|+.+|.+++|+......++||.-..+ .|+-...|..+ ..++.|+|
T Consensus 239 ~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---------------sLVKILhG~kgE~l~DV~whp 303 (405)
T KOG1273|consen 239 PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---------------SLVKILHGTKGEELLDVNWHP 303 (405)
T ss_pred hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---------------ceeeeecCCchhheeeccccc
Confidence 2233321 22345688999999998877777889999998874 45555666654 68999999
Q ss_pred CCCeeeecCCCccccceeEEEEeeccc
Q 011709 440 RESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 440 ~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
-..++++. . .|.|++|.....
T Consensus 304 ~rp~i~si-~-----sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 304 VRPIIASI-A-----SGVVYIWAVVQV 324 (405)
T ss_pred ceeeeeec-c-----CCceEEEEeecc
Confidence 99998887 3 679999976543
No 131
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.91 E-value=1.1e-21 Score=189.74 Aligned_cols=278 Identities=18% Similarity=0.247 Sum_probs=201.6
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC--c
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--Y 210 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~--~ 210 (479)
....+.-+.+|.|+.|+|.++++||.|..+|.|.+||+..+.... ..........|.. .++.+.|..+.. -
T Consensus 235 Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~------~s~ls~~~~sh~~-~v~~vvW~~~~~~~~ 307 (555)
T KOG1587|consen 235 PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP------PSGLSALEVSHSE-PVTAVVWLQNEHNTE 307 (555)
T ss_pred ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC------CcccccccccCCc-CeEEEEEeccCCCCc
Confidence 444566678999999999999999999999999999999874321 0111223345665 588999987644 4
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
+++++.||.|+.|+++............. .. ....-......+++++|.+..
T Consensus 308 f~s~ssDG~i~~W~~~~l~~P~e~~~~~~--------------------------~~--~~~~~~~~~~~~t~~~F~~~~ 359 (555)
T KOG1587|consen 308 FFSLSSDGSICSWDTDMLSLPVEGLLLES--------------------------KK--HKGQQSSKAVGATSLKFEPTD 359 (555)
T ss_pred eEEEecCCcEeeeeccccccchhhccccc--------------------------cc--ccccccccccceeeEeeccCC
Confidence 99999999999998865332111111000 00 000001123468999999999
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCC------ceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCc
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSP------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 364 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~ 364 (479)
++.|+.|+++|.|..-+....+.. .+.....|.+.|+++.++|+....|++++ |.+|+||..... ..|
T Consensus 360 p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~-----~~P 433 (555)
T KOG1587|consen 360 PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI-----ASP 433 (555)
T ss_pred CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC-----CCc
Confidence 999999999999987433322211 13345578999999999998777777777 999999998731 578
Q ss_pred eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCee
Q 011709 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCL 444 (479)
Q Consensus 365 ~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l 444 (479)
+..+..+...|++++|||....+|+++..||.|.|||+..... .|. .-...+-.....+.|++.++.|
T Consensus 434 l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~----------~Pv--~s~~~~~~~l~~~~~s~~g~~l 501 (555)
T KOG1587|consen 434 LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE----------EPV--LSQKVCSPALTRVRWSPNGKLL 501 (555)
T ss_pred chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc----------CCc--ccccccccccceeecCCCCcEE
Confidence 8889889999999999999999999999999999999987311 111 1111122335788999999999
Q ss_pred eecCCCccccceeEEEEeeccccc
Q 011709 445 VDNNHGLSYANKKIKIYCHLEALK 468 (479)
Q Consensus 445 ~~~~~~~~~~d~~i~i~~~~~~~~ 468 (479)
++|+. .|.+.+|.+.+.+.
T Consensus 502 avGd~-----~G~~~~~~l~~~l~ 520 (555)
T KOG1587|consen 502 AVGDA-----NGTTHILKLSESLA 520 (555)
T ss_pred EEecC-----CCcEEEEEcCchhh
Confidence 99999 99999998865543
No 132
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.9e-22 Score=176.43 Aligned_cols=290 Identities=16% Similarity=0.256 Sum_probs=208.9
Q ss_pred cCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceee
Q 011709 122 FNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA 201 (479)
Q Consensus 122 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~ 201 (479)
|.......++.+....+|.|.|++|.|+. ++.+||+|++|..++||+++..-... ..+++.....|+.+-|+|
T Consensus 38 F~~~~~~R~~~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k------~~KPI~~~~~~H~SNIF~ 110 (609)
T KOG4227|consen 38 FRPDFQHRPFCQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRK------TPKPIGVMEHPHRSNIFS 110 (609)
T ss_pred hchhhhhcchhhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhc------CCCCceeccCccccceEE
Confidence 43333334455667789999999999999 79999999999999999998652221 235666666666456999
Q ss_pred eeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCce
Q 011709 202 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV 281 (479)
Q Consensus 202 l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 281 (479)
|+|...+++|.+|+.+++|.+.|+++...... ..-....+.|
T Consensus 111 L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V--------------------------------------~~~~~~~~~V 152 (609)
T KOG4227|consen 111 LEFDLENRFLYSGERWGTVIKHDIETKQSIYV--------------------------------------ANENNNRGDV 152 (609)
T ss_pred EEEccCCeeEecCCCcceeEeeecccceeeee--------------------------------------ecccCcccce
Confidence 99999999999999999999999987544211 1112234589
Q ss_pred EEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCce-eeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 011709 282 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI-KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (479)
Q Consensus 282 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~ 360 (479)
+.+..+|.. ++|++.+.++.|.+||.|....+.. ...........++-|+|....+|++.+..+-+.+||+|......
T Consensus 153 Y~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~ 231 (609)
T KOG4227|consen 153 YHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV 231 (609)
T ss_pred eecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH
Confidence 999999996 8999999999999999998764322 22334567789999999888999999999999999999754210
Q ss_pred -----------------------CC---------CceeeecC-----------CC-------CcEEEEEEecCCCcEEEE
Q 011709 361 -----------------------VG---------SPINKFEG-----------HS-------AAVLCVQWSPDKSSVFGS 390 (479)
Q Consensus 361 -----------------------~~---------~~~~~~~~-----------h~-------~~v~~l~~~p~~~~llas 390 (479)
.+ .+..-+.- |. ..+.+++|-.+.. +++
T Consensus 232 ~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~--v~t 309 (609)
T KOG4227|consen 232 YQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT--VAT 309 (609)
T ss_pred HhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee--eec
Confidence 01 11000111 11 2456677765554 679
Q ss_pred EeCCCCEEEEeCCCCCcccc--CCC-CCCCCCC-----eeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEE
Q 011709 391 SAEDGLLNIWDYEKVGKKVE--QGP-RTTNYPA-----GLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIY 461 (479)
Q Consensus 391 ~s~Dg~v~iwd~~~~~~~~~--~~~-~~~~~~~-----~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~ 461 (479)
|+.+-.|.+|.+.......- +.. .+...|. .-+.+..||.. +..+.|+|...+|++.|. .+.|+||
T Consensus 310 GSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV-----E~~~KlW 384 (609)
T KOG4227|consen 310 GSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGV-----ENSFKLW 384 (609)
T ss_pred cCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccch-----hhheecc
Confidence 99999999999876322111 000 0111232 34568899999 789999999999999998 8999999
Q ss_pred eec
Q 011709 462 CHL 464 (479)
Q Consensus 462 ~~~ 464 (479)
..-
T Consensus 385 S~~ 387 (609)
T KOG4227|consen 385 SDH 387 (609)
T ss_pred ccc
Confidence 543
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=5e-21 Score=183.72 Aligned_cols=301 Identities=17% Similarity=0.244 Sum_probs=207.2
Q ss_pred eEEEecCC-CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEe-ccCCCceeeeeecCCCCc
Q 011709 133 KHKTIIHP-GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPY 210 (479)
Q Consensus 133 ~~~~~~h~-~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~l~~s~~~~~ 210 (479)
++..+.|. |.|+.++|..+...++|+|+..|.+.+||++.. +....+. .|.+ .|..+.|.|....
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k------------kl~~v~~nah~~-sv~~~~fl~~epV 302 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK------------KLINVTRNAHYG-SVTGATFLPGEPV 302 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC------------eeeeeeeccccC-CcccceecCCCce
Confidence 67778886 999999999977779999999999999999987 3333333 5654 3677888887778
Q ss_pred EEEecCCCcEEEEecCCCcccc------c---cCCcccccCCCCCceeecC-----------------------------
Q 011709 211 VLSGGKDKSVVLWSIQDHITSS------A---TDPATAKSAGSSGSIIKQS----------------------------- 252 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~----------------------------- 252 (479)
|++++.|..+++|=.+++.-.. . ..+......+..+..+..+
T Consensus 303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~ 382 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA 382 (910)
T ss_pred EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence 8888888877777554221100 0 0000000000000000000
Q ss_pred ----------------------------------CCCCCCCCCCCCCCCCCC-ceeec-----CCCCceEEEEEeeCCCc
Q 011709 253 ----------------------------------PKPGDGNDKAADGPSVGP-RGIYN-----GHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 253 ----------------------------------~~~~~~~~~~~~~~~~~~-~~~~~-----~h~~~v~~l~~~~~~~~ 292 (479)
...+......|+...... ...+. .-...+++++.++.| +
T Consensus 383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-N 461 (910)
T KOG1539|consen 383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-N 461 (910)
T ss_pred ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-c
Confidence 000111112222222111 11221 122568899999999 8
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeee---ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCC-----------
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS----------- 358 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~----------- 358 (479)
+.+.|...|.|-+|++.++- ....+ ..|..+|+.++... -++.+++++.+|.+.+||.....-
T Consensus 462 F~~IG~S~G~Id~fNmQSGi--~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~ 538 (910)
T KOG1539|consen 462 FVFIGYSKGTIDRFNMQSGI--HRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSIT 538 (910)
T ss_pred eEEEeccCCeEEEEEcccCe--eecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcc
Confidence 89999999999999999987 44444 48999999999988 788999999999999999876330
Q ss_pred ------------------------CCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCC
Q 011709 359 ------------------------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 414 (479)
Q Consensus 359 ------------------------~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~ 414 (479)
..+.+.+..+.+|.+.|+.++|||+|++ |++++.|++|++||+.++
T Consensus 539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW-lisasmD~tIr~wDlpt~--------- 608 (910)
T KOG1539|consen 539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW-LISASMDSTIRTWDLPTG--------- 608 (910)
T ss_pred eeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE-EEEeecCCcEEEEeccCc---------
Confidence 0012344566789999999999999997 569999999999999984
Q ss_pred CCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeecccccce
Q 011709 415 TTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEALKSF 470 (479)
Q Consensus 415 ~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~~~~ 470 (479)
.++-...-..+.+++.|+|+|.+||++..+ ..-|++|.....++..
T Consensus 609 ------~lID~~~vd~~~~sls~SPngD~LAT~Hvd----~~gIylWsNkslF~~v 654 (910)
T KOG1539|consen 609 ------TLIDGLLVDSPCTSLSFSPNGDFLATVHVD----QNGIYLWSNKSLFKSV 654 (910)
T ss_pred ------ceeeeEecCCcceeeEECCCCCEEEEEEec----CceEEEEEchhHheec
Confidence 223233333457999999999999999985 6899999888777654
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1e-21 Score=190.50 Aligned_cols=244 Identities=16% Similarity=0.275 Sum_probs=192.3
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s 215 (479)
+..|.+.-+.|+|.| ++.+|.+++.||.|++|+.......+ . .+..+. ..|.+++- ++.+|++|+
T Consensus 9 Ryaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P----------~-ti~~~g-~~v~~ia~--~s~~f~~~s 73 (933)
T KOG1274|consen 9 RYAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEP----------E-TIDISG-ELVSSIAC--YSNHFLTGS 73 (933)
T ss_pred hhhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCC----------c-hhhccC-ceeEEEee--cccceEEee
Confidence 358999999999999 77899999999999999987763221 1 111133 24555554 455899999
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
.+++|.++.+.++... ..+...+-++.+++|+.+| .+++
T Consensus 74 ~~~tv~~y~fps~~~~----------------------------------------~iL~Rftlp~r~~~v~g~g-~~ia 112 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGEED----------------------------------------TILARFTLPIRDLAVSGSG-KMIA 112 (933)
T ss_pred ccceEEEeeCCCCCcc----------------------------------------ceeeeeeccceEEEEecCC-cEEE
Confidence 9999999998654321 2333456689999999999 7899
Q ss_pred EEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC-----
Q 011709 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG----- 370 (479)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~----- 370 (479)
.||+|-.|++-++.+.. ....+.+|.++|.++.|+| .+++||+.+.||.|++||+.. +....++.+
T Consensus 113 agsdD~~vK~~~~~D~s--~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~------~~~~~tl~~v~k~n 183 (933)
T KOG1274|consen 113 AGSDDTAVKLLNLDDSS--QEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQD------GILSKTLTGVDKDN 183 (933)
T ss_pred eecCceeEEEEeccccc--hheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEccc------chhhhhcccCCccc
Confidence 99999999999999887 5778889999999999999 999999999999999999997 444444432
Q ss_pred --C-CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC--CCC-ceeEEEecCCCee
Q 011709 371 --H-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HSP-SSSIKFVLRESCL 444 (479)
Q Consensus 371 --h-~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g--h~~-~~~~~~sp~~~~l 444 (479)
- ...+..++|+|++.. |+..+.|+.|++|+...- +..|...+ +.. .+.+.|+|.|.||
T Consensus 184 ~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~w---------------e~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 184 EFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGW---------------ELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred cccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCc---------------eeheeecccccccceEEEEEcCCCcEE
Confidence 1 346788999999886 557777999999998763 23333322 222 7899999999999
Q ss_pred eecCCCccccceeEEEEeecc
Q 011709 445 VDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 445 ~~~~~~~~~~d~~i~i~~~~~ 465 (479)
|+++- +|.|-||++..
T Consensus 248 AAs~~-----~g~I~vWnv~t 263 (933)
T KOG1274|consen 248 AASTL-----DGQILVWNVDT 263 (933)
T ss_pred eeecc-----CCcEEEEeccc
Confidence 99999 99999999875
No 135
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.1e-21 Score=168.43 Aligned_cols=240 Identities=18% Similarity=0.284 Sum_probs=172.7
Q ss_pred EEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCcccccc
Q 011709 155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT 234 (479)
Q Consensus 155 ~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 234 (479)
.|++|+....|.=+++.-..............+...+..|.+ .+++++.+ +.+++|||.|-+|+|||+.....
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~-sitavAVs--~~~~aSGssDetI~IYDm~k~~q---- 75 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAG-SITALAVS--GPYVASGSSDETIHIYDMRKRKQ---- 75 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeecccccccccc-ceeEEEec--ceeEeccCCCCcEEEEeccchhh----
Confidence 366777777777676655431111111112244667788997 48999985 88999999999999999975432
Q ss_pred CCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC-CcEEEEEecCCeEEEEeCCCCCC
Q 011709 235 DPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTS 313 (479)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~ 313 (479)
+..+-.|.+.|+++.|.+.- ...|++|++||.|.+|+.....
T Consensus 76 ------------------------------------lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~- 118 (362)
T KOG0294|consen 76 ------------------------------------LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE- 118 (362)
T ss_pred ------------------------------------hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-
Confidence 24556699999999998764 1379999999999999998876
Q ss_pred CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC-----------------------
Q 011709 314 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG----------------------- 370 (479)
Q Consensus 314 ~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~----------------------- 370 (479)
++..+++|.+.|+.++.+| .+.+-++.+.|+.+++||+-.... ..+..+..
T Consensus 119 -~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~----a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~ 192 (362)
T KOG0294|consen 119 -LLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRV----AFVLNLKNKATLVSWSPQGDHFVVSGRNKID 192 (362)
T ss_pred -EeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCcc----ceeeccCCcceeeEEcCCCCEEEEEeccEEE
Confidence 8999999999999999999 999999999999999999976331 11111110
Q ss_pred --------------CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeE
Q 011709 371 --------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSI 435 (479)
Q Consensus 371 --------------h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~ 435 (479)
....+.++.|...+ .|++|+.|+.|.+||.... ..++...+|.. |.++
T Consensus 193 i~q~d~A~v~~~i~~~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds~---------------~~~~~~~AH~~RVK~i 255 (362)
T KOG0294|consen 193 IYQLDNASVFREIENPKRILCATFLDGS--ELLVGGDNEWISLKDTDSD---------------TPLTEFLAHENRVKDI 255 (362)
T ss_pred EEecccHhHhhhhhccccceeeeecCCc--eEEEecCCceEEEeccCCC---------------ccceeeecchhheeee
Confidence 01124444444333 2457777777777776652 22455667777 8888
Q ss_pred EE--ecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 436 KF--VLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 436 ~~--sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
.+ +|++.+|++++. ||.|++|+....
T Consensus 256 ~~~~~~~~~~lvTaSS-----DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASS-----DGFIKVWDIDME 283 (362)
T ss_pred EEEecCCceEEEEecc-----CceEEEEEcccc
Confidence 75 477899999999 999999975533
No 136
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=3.6e-22 Score=169.20 Aligned_cols=217 Identities=21% Similarity=0.399 Sum_probs=169.6
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC--CCCcEEEec
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGG 215 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~--~~~~l~s~s 215 (479)
.|-|.|.|+.|.| ++..||+-. |..|.+|++.......... +...-.+|.. ..++-+|+| +|+.+++.+
T Consensus 121 eavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev------~ss~s~e~~~-~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 121 EAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEV------LSSESAEMRH-SFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred HHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheee------cccccccccc-eecccccCCCCccceEEEeC
Confidence 3557999999999 777787776 6799999999875421110 0011112333 257889999 577777765
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
|+++..||+++..... ..-..|...|.++.|+|....+|+
T Consensus 192 -d~tl~~~D~RT~~~~~---------------------------------------sI~dAHgq~vrdlDfNpnkq~~lv 231 (370)
T KOG1007|consen 192 -DSTLQFWDLRTMKKNN---------------------------------------SIEDAHGQRVRDLDFNPNKQHILV 231 (370)
T ss_pred -CCcEEEEEccchhhhc---------------------------------------chhhhhcceeeeccCCCCceEEEE
Confidence 8999999998644322 223458889999999999888999
Q ss_pred EEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC---------------
Q 011709 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG--------------- 360 (479)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~--------------- 360 (479)
+|++||.|++||+|..+.| +..+.+|...|+++.|+|....+|++|+.|..|.+|......++.
T Consensus 232 t~gDdgyvriWD~R~tk~p-v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~d 310 (370)
T KOG1007|consen 232 TCGDDGYVRIWDTRKTKFP-VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDED 310 (370)
T ss_pred EcCCCccEEEEeccCCCcc-ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchh
Confidence 9999999999999998864 667789999999999999889999999999999999876533110
Q ss_pred --------CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 361 --------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 361 --------~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
....+.++..|.+.|++++|+.-.+++||+-|.||.+.|=.+..
T Consensus 311 seer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 311 SEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 12345578889999999999999999999999999998877654
No 137
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=1.8e-21 Score=174.80 Aligned_cols=256 Identities=16% Similarity=0.243 Sum_probs=189.0
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.+....|.++|.+|.|+|.+...+.+.|.||+|++-|+++... ..+..+..-. ....++.|+.+...++
T Consensus 227 v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~----------e~v~s~~~d~-~~fs~~d~~~e~~~vl 295 (498)
T KOG4328|consen 227 VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS----------EEVLSLDTDN-IWFSSLDFSAESRSVL 295 (498)
T ss_pred eEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhh----------HHHhhcCccc-eeeeeccccCCCccEE
Confidence 5666789999999999999999999999999999999998721 1222222122 2467788988888888
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
.+..=|...+||.+..... ...+.-|...|++|+++|..+.
T Consensus 296 ~~~~~G~f~~iD~R~~~s~---------------------------------------~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 296 FGDNVGNFNVIDLRTDGSE---------------------------------------YENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred EeecccceEEEEeecCCcc---------------------------------------chhhhhhhcccceeecCCCCch
Confidence 8888889999999864331 1344558889999999999999
Q ss_pred EEEEEecCCeEEEEeCCCCCC---CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec
Q 011709 293 EFCSVGDDSCLILWDARVGTS---PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
+|+|++.|++++|||+|.-.. |.+.. ..|...|++..||| .+..|+|.+.|..|+|||..-.... ..++.++.
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst-~~HrrsV~sAyFSP-s~gtl~TT~~D~~IRv~dss~~sa~--~~p~~~I~ 412 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLST-LPHRRSVNSAYFSP-SGGTLLTTCQDNEIRVFDSSCISAK--DEPLGTIP 412 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceec-ccccceeeeeEEcC-CCCceEeeccCCceEEeeccccccc--CCccceee
Confidence 999999999999999997542 33444 48999999999999 4445999999999999998421110 23444443
Q ss_pred CCCC------cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC--Cc-eeEEEecC
Q 011709 370 GHSA------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS--PS-SSIKFVLR 440 (479)
Q Consensus 370 ~h~~------~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~--~~-~~~~~sp~ 440 (479)
|.. .....+|.|+.. ++++|-.-..|-|+|-..+ +++....+.. .| .-..|+|-
T Consensus 413 -Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~---------------q~v~el~~P~~~tI~~vn~~HP~ 475 (498)
T KOG4328|consen 413 -HNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGG---------------QMVCELHDPESSTIPSVNEFHPM 475 (498)
T ss_pred -ccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCC---------------EEeeeccCccccccccceeeccc
Confidence 221 244678999887 6889988888999997763 2232222222 23 34789999
Q ss_pred CCeeeecCCCccccceeEEEEee
Q 011709 441 ESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 441 ~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
+..+++|+.. .|.|.+|..
T Consensus 476 ~~~~~aG~~s----~Gki~vft~ 494 (498)
T KOG4328|consen 476 RDTLAAGGNS----SGKIYVFTN 494 (498)
T ss_pred ccceeccCCc----cceEEEEec
Confidence 8877777775 888888754
No 138
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=1.3e-21 Score=164.15 Aligned_cols=211 Identities=20% Similarity=0.312 Sum_probs=175.9
Q ss_pred EEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCC
Q 011709 190 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 269 (479)
Q Consensus 190 ~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (479)
.+.||.. +++.+.++.+|.+|.+|+.|.++.||--.++ +
T Consensus 5 ~l~GHER-plTqiKyN~eGDLlFscaKD~~~~vw~s~nG----------------------------------------e 43 (327)
T KOG0643|consen 5 LLQGHER-PLTQIKYNREGDLLFSCAKDSTPTVWYSLNG----------------------------------------E 43 (327)
T ss_pred ccccCcc-ccceEEecCCCcEEEEecCCCCceEEEecCC----------------------------------------c
Confidence 5788997 5899999999999999999999999966433 2
Q ss_pred CceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC----
Q 011709 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---- 345 (479)
Q Consensus 270 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d---- 345 (479)
.+.++.||++.|.++....+. ..+++|+.|.++++||+.+++ .+... .-...|..+.|++ ++++++...++
T Consensus 44 rlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk--~la~~-k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~ 118 (327)
T KOG0643|consen 44 RLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGK--QLATW-KTNSPVKRVDFSF-GGNLILASTDKQMGY 118 (327)
T ss_pred eeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCc--EEEEe-ecCCeeEEEeecc-CCcEEEEEehhhcCc
Confidence 347899999999999998887 689999999999999999999 45554 4678899999999 89988887764
Q ss_pred -CcEEEEecCCCCCC-CCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeE
Q 011709 346 -NSVRMFDRRNLTSN-GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 423 (479)
Q Consensus 346 -g~I~iwd~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 423 (479)
+.|.++|++...+. ....|+..+..+...++.+-|.|-++. |++|..||.|.+||++++. +++
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~-ii~Ghe~G~is~~da~~g~--------------~~v 183 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET-IIAGHEDGSISIYDARTGK--------------ELV 183 (327)
T ss_pred ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE-EEEecCCCcEEEEEcccCc--------------eee
Confidence 57999999964421 124678889999999999999999996 5699999999999999852 223
Q ss_pred EEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 424 FQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 424 ~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
-+..-|.. ++++++++|..++++++. |..-++|+....
T Consensus 184 ~s~~~h~~~Ind~q~s~d~T~FiT~s~-----Dttakl~D~~tl 222 (327)
T KOG0643|consen 184 DSDEEHSSKINDLQFSRDRTYFITGSK-----DTTAKLVDVRTL 222 (327)
T ss_pred echhhhccccccccccCCcceEEeccc-----Cccceeeeccce
Confidence 33344555 899999999999999999 999999986654
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.2e-21 Score=182.27 Aligned_cols=241 Identities=17% Similarity=0.286 Sum_probs=192.8
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg 218 (479)
-+.+|.+++|+. ..+.||.+-.||.|.||++... .-....+.|+.+..|-+|+|+ .+.+|.|.+.+|
T Consensus 24 ~Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~-----------w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg 90 (691)
T KOG2048|consen 24 KPSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNN-----------WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSG 90 (691)
T ss_pred eccceEEEEEec-cCCceeeeccCCcEEEEccCCC-----------ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCc
Confidence 367899999999 6667999999999999999875 345667888988889999999 455788889999
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (479)
.|.-||+.+... +..+....+.|.+++.+|.+ ..++.|+
T Consensus 91 ~i~EwDl~~lk~----------------------------------------~~~~d~~gg~IWsiai~p~~-~~l~Igc 129 (691)
T KOG2048|consen 91 SITEWDLHTLKQ----------------------------------------KYNIDSNGGAIWSIAINPEN-TILAIGC 129 (691)
T ss_pred eEEEEecccCce----------------------------------------eEEecCCCcceeEEEeCCcc-ceEEeec
Confidence 999999976433 34555567889999999998 6799999
Q ss_pred cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceee-------ecC-
Q 011709 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-------FEG- 370 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~-------~~~- 370 (479)
+||.+..++...+.-.....+....+.|.+++|+| ++..|++|+.||.|++||... +..++. +..
T Consensus 130 ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~------~~t~~~~~~~~d~l~k~ 202 (691)
T KOG2048|consen 130 DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKS------GQTLHIITMQLDRLSKR 202 (691)
T ss_pred CCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCC------CceEEEeeecccccccC
Confidence 99988888877766322334445568999999999 999999999999999999998 444441 111
Q ss_pred CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCC
Q 011709 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~ 449 (479)
-..-|.++.|-.++ .+|+|..-|+|.+||...+ .|+-.|..|.. |.+++-.+++.+++++|.
T Consensus 203 ~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~g---------------TLiqS~~~h~adVl~Lav~~~~d~vfsaGv 265 (691)
T KOG2048|consen 203 EPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFG---------------TLIQSHSCHDADVLALAVADNEDRVFSAGV 265 (691)
T ss_pred CceEEEEEEEeecC--cEEEecCCceEEEEcccCc---------------chhhhhhhhhcceeEEEEcCCCCeEEEccC
Confidence 23457888888776 4789999999999998885 34446666766 999999999999999999
Q ss_pred CccccceeEEEEe
Q 011709 450 GLSYANKKIKIYC 462 (479)
Q Consensus 450 ~~~~~d~~i~i~~ 462 (479)
|+.|-.|.
T Consensus 266 -----d~~ii~~~ 273 (691)
T KOG2048|consen 266 -----DPKIIQYS 273 (691)
T ss_pred -----CCceEEEE
Confidence 77777664
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.7e-20 Score=175.25 Aligned_cols=245 Identities=11% Similarity=0.089 Sum_probs=167.1
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE-ec
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS-GG 215 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s-~s 215 (479)
+.+...+..+.|+|+...++++++.++.|++||..++ +....+..+.. +..++|+|+++.+++ ++
T Consensus 27 ~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~~--~~~~~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 27 FPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG------------EVIGTLPSGPD--PELFALHPNGKILYIANE 92 (300)
T ss_pred EECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCC------------cEEEeccCCCC--ccEEEECCCCCEEEEEcC
Confidence 3334457889999944444577888999999999876 23333444433 467899999987654 45
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
.|+.|++||+.+.... ..+. +...+.+++|+|++ .+++
T Consensus 93 ~~~~l~~~d~~~~~~~----------------------------------------~~~~-~~~~~~~~~~~~dg-~~l~ 130 (300)
T TIGR03866 93 DDNLVTVIDIETRKVL----------------------------------------AEIP-VGVEPEGMAVSPDG-KIVV 130 (300)
T ss_pred CCCeEEEEECCCCeEE----------------------------------------eEee-CCCCcceEEECCCC-CEEE
Confidence 6899999999753211 1122 12345789999999 5677
Q ss_pred EEecCC-eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEE-EeCCCcEEEEecCCCCCCCCCCceeeecCCC-
Q 011709 296 SVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSPINKFEGHS- 372 (479)
Q Consensus 296 s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~t-gs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~- 372 (479)
+++.++ .+.+||.+++. ...... ......+++|+| ++.+|++ +..++.|++||+++ ++.+..+..+.
T Consensus 131 ~~~~~~~~~~~~d~~~~~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~------~~~~~~~~~~~~ 200 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYE--IVDNVL-VDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVAT------RKVIKKITFEIP 200 (300)
T ss_pred EEecCCCeEEEEeCCCCe--EEEEEE-cCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCc------ceeeeeeeeccc
Confidence 777664 57788998766 333322 234567899999 7877754 45699999999997 55555443221
Q ss_pred ----C--cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeee
Q 011709 373 ----A--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVD 446 (479)
Q Consensus 373 ----~--~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~ 446 (479)
. ....++|+|++++++++.+.++.+.+||+.+. . +......+..+.+++|+|++..|++
T Consensus 201 ~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~--------------~~~~~~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 201 GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-E--------------VLDYLLVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-c--------------EEEEEEeCCCcceEEECCCCCEEEE
Confidence 1 23568899999976666666778999999763 1 1111111235789999999999988
Q ss_pred cCCCccccceeEEEEeeccc
Q 011709 447 NNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 447 ~~~~~~~~d~~i~i~~~~~~ 466 (479)
++.. ++.|.+|+....
T Consensus 266 ~~~~----~~~i~v~d~~~~ 281 (300)
T TIGR03866 266 TNGV----SNDVSVIDVAAL 281 (300)
T ss_pred EcCC----CCeEEEEECCCC
Confidence 6543 899999987654
No 141
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=4.8e-21 Score=163.50 Aligned_cols=256 Identities=15% Similarity=0.181 Sum_probs=185.4
Q ss_pred CCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCC
Q 011709 94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 173 (479)
Q Consensus 94 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~ 173 (479)
.++=++.+++|+++-..... ......|.++|.+++|+. ++..+++|+.|+.+++||+.++
T Consensus 45 A~SWD~tVR~wevq~~g~~~-------------------~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 45 AGSWDGTVRIWEVQNSGQLV-------------------PKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred ecccCCceEEEEEecCCccc-------------------chhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCC
Confidence 34578889999876321100 123357899999999999 8899999999999999999987
Q ss_pred CCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC--cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeec
Q 011709 174 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ 251 (479)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
+ ...+..|.+ +|.++.|-+... .|++||+|++|+.||++....
T Consensus 105 Q-------------~~~v~~Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p--------------------- 149 (347)
T KOG0647|consen 105 Q-------------VSQVAAHDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP--------------------- 149 (347)
T ss_pred C-------------eeeeeeccc-ceeEEEEecCCCcceeEecccccceeecccCCCCe---------------------
Confidence 2 345667876 689999988765 899999999999999975322
Q ss_pred CCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEe
Q 011709 252 SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 331 (479)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 331 (479)
+..+. -...|+++..- . .+++.+..++.|.+|+++.+............-.+.||+.
T Consensus 150 -------------------v~t~~-LPeRvYa~Dv~--~-pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~ 206 (347)
T KOG0647|consen 150 -------------------VATLQ-LPERVYAADVL--Y-PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVAC 206 (347)
T ss_pred -------------------eeeee-ccceeeehhcc--C-ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEE
Confidence 12222 23456666553 2 3678888899999999987653222223334556889998
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC---------CcEEEEEEecCCCcEEEEEeCCCCEEEEeC
Q 011709 332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 402 (479)
Q Consensus 332 sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~~p~~~~llas~s~Dg~v~iwd~ 402 (479)
.+ +....+.|+-+|.+-|..+.... ...-..|+.|. -+|++|+|+|... .|+|+|.||++.+||-
T Consensus 207 f~-d~~~~alGsiEGrv~iq~id~~~----~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 207 FQ-DKDGFALGSIEGRVAIQYIDDPN----PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDK 280 (347)
T ss_pred Ee-cCCceEeeeecceEEEEecCCCC----ccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecc
Confidence 88 77777999999999999888732 12333445554 2688999999877 5889999999999997
Q ss_pred CCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeec
Q 011709 403 EKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDN 447 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~ 447 (479)
... .. |.-......++++.+|+.+|.+++.+
T Consensus 281 dar-~k-------------Lk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 281 DAR-TK-------------LKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred hhh-hh-------------hhccCcCCCccceeEecCCCCEEEEE
Confidence 763 11 11112223568999999999988765
No 142
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=5.9e-21 Score=183.25 Aligned_cols=306 Identities=14% Similarity=0.178 Sum_probs=214.6
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YV 211 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l 211 (479)
+.+.-++...|+++.-+| --+.+|.|..+|+|.|+++..+ +.+..++... +.|+.++|.-||. .|
T Consensus 195 v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~d------------kil~sFk~d~-g~VtslSFrtDG~p~l 260 (910)
T KOG1539|consen 195 VYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFD------------KILMSFKQDW-GRVTSLSFRTDGNPLL 260 (910)
T ss_pred EEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccC------------cEEEEEEccc-cceeEEEeccCCCeeE
Confidence 455567889999999999 6779999999999999999988 5566666553 4699999999987 67
Q ss_pred EEecCCCcEEEEecCCCccccccCCcc-----cccCCCCCceeecCCCCCCCCCCCCCCCCC--CCceeecCCCCceEEE
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPAT-----AKSAGSSGSIIKQSPKPGDGNDKAADGPSV--GPRGIYNGHEDTVEDV 284 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~l 284 (479)
++|+..|.+.+||++............ .........++..+.....-.+.+.|...+ +.++.-.||..+..++
T Consensus 261 as~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~i 340 (910)
T KOG1539|consen 261 ASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCI 340 (910)
T ss_pred EeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhe
Confidence 788888999999999765543322111 000011111122111122222333343333 3345556899999999
Q ss_pred EEeeCCCcEEEEEecCCeEEEEeCCCCCC--------------------------Cc-----------------------
Q 011709 285 TFCPSSAQEFCSVGDDSCLILWDARVGTS--------------------------PV----------------------- 315 (479)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------------------~~----------------------- 315 (479)
.|.......+.+++.|++++.+++..... |.
T Consensus 341 rfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~ 420 (910)
T KOG1539|consen 341 RFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKG 420 (910)
T ss_pred eeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecC
Confidence 99865558899999999888887642110 00
Q ss_pred ---------------eeee-----ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee---cCCC
Q 011709 316 ---------------IKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF---EGHS 372 (479)
Q Consensus 316 ---------------~~~~-----~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~---~~h~ 372 (479)
...+ +.....+++++.++ .|++.+.|++.|.|-+|++++ |-...++ ..|.
T Consensus 421 ~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQS------Gi~r~sf~~~~ah~ 493 (910)
T KOG1539|consen 421 KRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQS------GIHRKSFGDSPAHK 493 (910)
T ss_pred cceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEccc------CeeecccccCcccc
Confidence 0000 01125688999999 999999999999999999998 6666667 5899
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC---------------------------CCCCeeEEE
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT---------------------------NYPAGLFFQ 425 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~---------------------------~~~~~l~~~ 425 (479)
++|++++...-++ ++++++.+|.+++||+.... ......... .....++-.
T Consensus 494 ~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~-l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~ 571 (910)
T KOG1539|consen 494 GEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKV-LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE 571 (910)
T ss_pred CceeEEEecCCCc-eEEEccCcceEEEEecCCcc-eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence 9999999998887 67899999999999998742 111111000 000112223
Q ss_pred eCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 426 HAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 426 ~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
..||+. +++++|||||++|++++. |++|++||....
T Consensus 572 f~gh~nritd~~FS~DgrWlisasm-----D~tIr~wDlpt~ 608 (910)
T KOG1539|consen 572 FWGHGNRITDMTFSPDGRWLISASM-----DSTIRTWDLPTG 608 (910)
T ss_pred hhccccceeeeEeCCCCcEEEEeec-----CCcEEEEeccCc
Confidence 467888 999999999999999999 999999987654
No 143
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=3.8e-21 Score=169.69 Aligned_cols=215 Identities=19% Similarity=0.332 Sum_probs=173.9
Q ss_pred EEEeccCCCceeeeeecCC-CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCC
Q 011709 189 LILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267 (479)
Q Consensus 189 ~~~~~h~~~~v~~l~~s~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (479)
-.+.||++ .|..++|+|- ...+||||.|.+|.||++....... ..
T Consensus 75 P~v~GHt~-~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~---------------------------------~l 120 (472)
T KOG0303|consen 75 PLVCGHTA-PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR---------------------------------DL 120 (472)
T ss_pred CCccCccc-cccccccCccCCceeecCCCCceEEEEECCCccccc---------------------------------Cc
Confidence 35789997 5899999996 4589999999999999997543321 11
Q ss_pred CCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCc
Q 011709 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 347 (479)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~ 347 (479)
..++..+.+|...|.-++|||...++|++++.|.+|.+|++.++. .+..+. |..-|++++|+- +|.+|+|.+.|+.
T Consensus 121 tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--ali~l~-hpd~i~S~sfn~-dGs~l~TtckDKk 196 (472)
T KOG0303|consen 121 TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--ALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKK 196 (472)
T ss_pred ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--eeeecC-CCCeEEEEEecc-CCceeeeecccce
Confidence 245688999999999999999998999999999999999999998 455554 999999999999 9999999999999
Q ss_pred EEEEecCCCCCCCCCCceeeecCCCCc-EEEEEEecCCCcEEEEEe---CCCCEEEEeCCCCCccccCCCCCCCCCCeeE
Q 011709 348 VRMFDRRNLTSNGVGSPINKFEGHSAA-VLCVQWSPDKSSVFGSSA---EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 423 (479)
Q Consensus 348 I~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~llas~s---~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 423 (479)
|||||.|. ++.+.+-.+|.+. -..+.|-.++. ++.||- .+..+-+||..+... |-.+
T Consensus 197 vRv~dpr~------~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~e------------P~~~ 257 (472)
T KOG0303|consen 197 VRVIDPRR------GTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEE------------PIAL 257 (472)
T ss_pred eEEEcCCC------CcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccC------------ccee
Confidence 99999999 7888888888763 45566888887 554442 378999999877422 2233
Q ss_pred EEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 424 FQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 424 ~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.......+|.=--|.+|.+.+...|.| |++|+-|...
T Consensus 258 ~elDtSnGvl~PFyD~dt~ivYl~GKG----D~~IRYyEit 294 (472)
T KOG0303|consen 258 QELDTSNGVLLPFYDPDTSIVYLCGKG----DSSIRYFEIT 294 (472)
T ss_pred EEeccCCceEEeeecCCCCEEEEEecC----CcceEEEEec
Confidence 445555556667788999999999998 9999999543
No 144
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=6e-23 Score=179.07 Aligned_cols=243 Identities=19% Similarity=0.286 Sum_probs=158.7
Q ss_pred cEEEeccCCCceeeeeecCCC-CcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCC
Q 011709 188 DLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 266 (479)
Q Consensus 188 ~~~~~~h~~~~v~~l~~s~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (479)
+..|.||.++ |.|++=+|.. ..++||+.||.|++||+....+...+........+.....-.......+..+..|...
T Consensus 59 v~~L~gHrdG-V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 59 VGSLDGHRDG-VSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhhccccccc-cchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeecc
Confidence 4457899985 8999999986 6899999999999999976544322222110000000000000000111222222222
Q ss_pred CCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC
Q 011709 267 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 346 (479)
Q Consensus 267 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg 346 (479)
. .+.+++.+ ...+.++.-+..+ ..|+||+++ |.|||..... .+..+.-....|.++.|+|....+|+++++|+
T Consensus 138 ~-~p~~tilg-~s~~~gIdh~~~~-~~FaTcGe~--i~IWD~~R~~--Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 138 G-PPLHTILG-KSVYLGIDHHRKN-SVFATCGEQ--IDIWDEQRDN--PVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred C-Ccceeeec-ccccccccccccc-ccccccCce--eeecccccCC--ccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 1 12233322 2233444443333 345555443 5556554443 34445455677899999996678888888999
Q ss_pred cEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEe
Q 011709 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 426 (479)
Q Consensus 347 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (479)
.|.|||+|. +.|++.... .-.-+.|+|+|. .+.|++|+.|..++.+|++... ..+.+|
T Consensus 211 sIvLyD~R~------~~Pl~KVi~-~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~--------------~p~~v~ 268 (433)
T KOG0268|consen 211 SIVLYDLRQ------ASPLKKVIL-TMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLS--------------RPLNVH 268 (433)
T ss_pred ceEEEeccc------CCccceeee-eccccceecCcc-ccceeeccccccceehhhhhhc--------------ccchhh
Confidence 999999999 677766542 344578999994 4579999999999999999852 225578
Q ss_pred CCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 427 AGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 427 ~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
.+|.+ |.++.|||.|+-+++|+. |++|+||.+..
T Consensus 269 ~dhvsAV~dVdfsptG~Efvsgsy-----DksIRIf~~~~ 303 (433)
T KOG0268|consen 269 KDHVSAVMDVDFSPTGQEFVSGSY-----DKSIRIFPVNH 303 (433)
T ss_pred cccceeEEEeccCCCcchhccccc-----cceEEEeecCC
Confidence 89988 999999999999999999 99999996543
No 145
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.5e-21 Score=181.97 Aligned_cols=256 Identities=18% Similarity=0.313 Sum_probs=184.5
Q ss_pred EEEecC--CCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEE
Q 011709 145 RIRELP--QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (479)
Q Consensus 145 ~l~~~p--~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~v 222 (479)
+..|++ ...++||.+.+||.|.++|......+. ..........|.. +|..+.|.|....|++++.|.++++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~------ee~~lk~~~aH~n-AifDl~wapge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL------EERQLKKPLAHKN-AIFDLKWAPGESLLVSASGDSTIRP 126 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcch------hhhhhcccccccc-eeEeeccCCCceeEEEccCCceeee
Confidence 355554 467799999999999999988763221 1122345567875 6999999996668999999999999
Q ss_pred EecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCe
Q 011709 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 302 (479)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 302 (479)
||++...... ...+.||...|.+++|+|.++..|++|+.||.
T Consensus 127 Wdvk~s~l~G--------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ 168 (720)
T KOG0321|consen 127 WDVKTSRLVG--------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE 168 (720)
T ss_pred eeeccceeec--------------------------------------ceeecccccccchhhhccCCCcceeeccCCCc
Confidence 9998643311 13577899999999999999999999999999
Q ss_pred EEEEeCCCCCCC----------------------c---eeeeccCCCCeEE---EEecCCCCcEEEEEeC-CCcEEEEec
Q 011709 303 LILWDARVGTSP----------------------V---IKVEKAHDADLHC---VDWNPLDDNLILTGSA-DNSVRMFDR 353 (479)
Q Consensus 303 i~iwd~~~~~~~----------------------~---~~~~~~~~~~v~~---l~~sp~~~~~l~tgs~-dg~I~iwd~ 353 (479)
|.|||+|-.... . +..-..+...|.+ +.+.. |...||+++. |+.|+|||+
T Consensus 169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDL 247 (720)
T KOG0321|consen 169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDL 247 (720)
T ss_pred EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEee
Confidence 999999854310 0 0011133344444 44444 8889999888 999999999
Q ss_pred CCCCCCCCCCceee--ecCC---CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC
Q 011709 354 RNLTSNGVGSPINK--FEGH---SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (479)
Q Consensus 354 ~~~~~~~~~~~~~~--~~~h---~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g 428 (479)
|........++... +..| .-.++++..+..|.+++|++. |+.|.+||+...+. ..++.+.|
T Consensus 248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~-------------sP~~~~sg 313 (720)
T KOG0321|consen 248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSI-------------SPVAEFSG 313 (720)
T ss_pred cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCc-------------CchhhccC
Confidence 98554322333333 3333 336788888888999998888 99999999987422 12334444
Q ss_pred CCC---ceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 429 HSP---SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 429 h~~---~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
+.. -..-..+||+.+|++|+. |....+|.+..
T Consensus 314 ~~~~sf~vks~lSpd~~~l~SgSs-----d~~ayiw~vs~ 348 (720)
T KOG0321|consen 314 KLNSSFYVKSELSPDDCSLLSGSS-----DEQAYIWVVSS 348 (720)
T ss_pred cccceeeeeeecCCCCceEeccCC-----CcceeeeeecC
Confidence 443 234556899999999999 89999996543
No 146
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.8e-21 Score=173.31 Aligned_cols=245 Identities=12% Similarity=0.209 Sum_probs=183.9
Q ss_pred cEEEEEe-CCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCcccc
Q 011709 154 KIVATHT-DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 232 (479)
Q Consensus 154 ~~lat~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~ 232 (479)
.+++++. ....|.+|.+....... ...--. +.|.+++-+|.|.+|+.|+..|.|++|.+.++..
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~------------q~~v~P-g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-- 115 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV------------QYIVLP-GPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-- 115 (476)
T ss_pred hheeeecccCccccccccCchhhhh------------hhcccc-cceeeeecCCCceEEEeecccCcEEEEEeccccH--
Confidence 3444443 44589999998763221 111112 3689999999999999998999999999977654
Q ss_pred ccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCC--
Q 011709 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-- 310 (479)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-- 310 (479)
+..+.+|-..|+++.|+.+| .+|+||+.||.|.+|++..
T Consensus 116 --------------------------------------L~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 116 --------------------------------------LNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred --------------------------------------HHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeec
Confidence 35567899999999999999 7899999999999998743
Q ss_pred -----CCCCceeeeccCCCCeEEEEecCC-CCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCC
Q 011709 311 -----GTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384 (479)
Q Consensus 311 -----~~~~~~~~~~~~~~~v~~l~~sp~-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 384 (479)
........+..|.-+|+.+...+- ...+|+|+|.|.++++||+.. +..+.++. ....+++++.+|.+
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g~LLlti~-fp~si~av~lDpae 229 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------GVLLLTIT-FPSSIKAVALDPAE 229 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------ceeeEEEe-cCCcceeEEEcccc
Confidence 122356777899999999988762 247999999999999999998 77777766 45689999999999
Q ss_pred CcEEEEEeCCCCEEEEeCCCCCccccCCCCCC--CCCCeeEEEeCCCCC---ceeEEEecCCCeeeecCCCccccceeEE
Q 011709 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT--NYPAGLFFQHAGHSP---SSSIKFVLRESCLVDNNHGLSYANKKIK 459 (479)
Q Consensus 385 ~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~--~~~~~l~~~~~gh~~---~~~~~~sp~~~~l~~~~~~~~~~d~~i~ 459 (479)
+. +..|+.+|.|.+.++..... +....... .....-+-...||+. |++++.+-||..|++|+. ||.++
T Consensus 230 ~~-~yiGt~~G~I~~~~~~~~~~-~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~-----dg~Vc 302 (476)
T KOG0646|consen 230 RV-VYIGTEEGKIFQNLLFKLSG-QSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE-----DGKVC 302 (476)
T ss_pred cE-EEecCCcceEEeeehhcCCc-ccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC-----CCCEE
Confidence 86 55899999999999876321 11100000 000111234445554 999999999999999999 99999
Q ss_pred EEeeccc
Q 011709 460 IYCHLEA 466 (479)
Q Consensus 460 i~~~~~~ 466 (479)
+|+...+
T Consensus 303 vWdi~S~ 309 (476)
T KOG0646|consen 303 VWDIYSK 309 (476)
T ss_pred EEecchH
Confidence 9987654
No 147
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.8e-20 Score=161.45 Aligned_cols=246 Identities=15% Similarity=0.268 Sum_probs=179.8
Q ss_pred ecCCCceeEEEecC------CCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCC--ceeeeeecCCC
Q 011709 137 IIHPGEVNRIRELP------QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--AEFALAMCPTE 208 (479)
Q Consensus 137 ~~h~~~V~~l~~~p------~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--~v~~l~~s~~~ 208 (479)
..-.+.|..-.|-+ .+.+++|+.+.+.-|++||.-+++.+.. .....|.+. +..+|+|+|||
T Consensus 101 ~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraS----------y~~ydh~de~taAhsL~Fs~DG 170 (406)
T KOG2919|consen 101 YQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRAS----------YRAYDHQDEYTAAHSLQFSPDG 170 (406)
T ss_pred eccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccc----------hhhhhhHHhhhhheeEEecCCC
Confidence 34456677766652 2677999999999999999999954432 222223221 23699999999
Q ss_pred CcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCc-eeecCCCCceEEEEEe
Q 011709 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR-GIYNGHEDTVEDVTFC 287 (479)
Q Consensus 209 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~ 287 (479)
.+|++|. ...|+++|+...-..... ...+ +.-.+..+.+.+++|+
T Consensus 171 eqlfaGy-krcirvFdt~RpGr~c~v---------------------------------y~t~~~~k~gq~giisc~a~s 216 (406)
T KOG2919|consen 171 EQLFAGY-KRCIRVFDTSRPGRDCPV---------------------------------YTTVTKGKFGQKGIISCFAFS 216 (406)
T ss_pred CeEeecc-cceEEEeeccCCCCCCcc---------------------------------hhhhhcccccccceeeeeecc
Confidence 9998876 688999999532211000 0000 1123456789999999
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCCCCCCCCCCcee
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
|.....++.++....+-||.-..+. .+..+.+|.+.|+.+.|.+ +|+.|++|.. |-.|..||+|.. ..++.
T Consensus 217 P~~~~~~a~gsY~q~~giy~~~~~~--pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~-----~~pv~ 288 (406)
T KOG2919|consen 217 PMDSKTLAVGSYGQRVGIYNDDGRR--PLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYS-----RDPVY 288 (406)
T ss_pred CCCCcceeeecccceeeeEecCCCC--ceeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhc-----cchhh
Confidence 9887799999999999888877666 5777779999999999999 8999999887 779999999985 47888
Q ss_pred eecCCCC-cEEEE--EEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCC
Q 011709 367 KFEGHSA-AVLCV--QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRES 442 (479)
Q Consensus 367 ~~~~h~~-~v~~l--~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~ 442 (479)
.+..|.+ .-..| ...|+++ +||+|+.||.|++||+...+.+.. +..-|.. +..++++|--.
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~s--------------v~~~~sd~vNgvslnP~mp 353 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVS--------------VTGNYSDTVNGVSLNPIMP 353 (406)
T ss_pred hhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCccc--------------ccccccccccceecCcccc
Confidence 8888876 33334 4467888 689999999999999998655322 2233444 78899999877
Q ss_pred eeeecCC
Q 011709 443 CLVDNNH 449 (479)
Q Consensus 443 ~l~~~~~ 449 (479)
.+++.+.
T Consensus 354 ilatssG 360 (406)
T KOG2919|consen 354 ILATSSG 360 (406)
T ss_pred eeeeccC
Confidence 7776655
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=8.6e-21 Score=163.37 Aligned_cols=259 Identities=15% Similarity=0.345 Sum_probs=186.9
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeec-------CCCCcEEEecC
Q 011709 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC-------PTEPYVLSGGK 216 (479)
Q Consensus 144 ~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s-------~~~~~l~s~s~ 216 (479)
..+.|+| ++..|.+-+.|..+++|++....-...............++-..+..|+..+|- |+..++++.+.
T Consensus 53 kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 53 KGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred ccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 3568999 888888999999999999876432222111122233344555555678888887 45678999999
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCC---ceEEEEEeeCCCcE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED---TVEDVTFCPSSAQE 293 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~ 293 (479)
+.-|.+||.-+++....... ..|.. ...+++|+|+|. .
T Consensus 132 ~~PIh~wdaftG~lraSy~~--------------------------------------ydh~de~taAhsL~Fs~DGe-q 172 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRA--------------------------------------YDHQDEYTAAHSLQFSPDGE-Q 172 (406)
T ss_pred cCceeeeeccccccccchhh--------------------------------------hhhHHhhhhheeEEecCCCC-e
Confidence 99999999977655332211 11222 346899999995 4
Q ss_pred EEEEecCCeEEEEeC-CCCCC-Cceeee----ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceee
Q 011709 294 FCSVGDDSCLILWDA-RVGTS-PVIKVE----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (479)
Q Consensus 294 l~s~~~dg~i~iwd~-~~~~~-~~~~~~----~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~ 367 (479)
|+ ++...+|+++|+ |.++. +...++ .+..+-|.+++|+|.+...++.|+.-..+-||.-.. ..|+..
T Consensus 173 lf-aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~------~~pl~l 245 (406)
T KOG2919|consen 173 LF-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG------RRPLQL 245 (406)
T ss_pred Ee-ecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC------CCceee
Confidence 44 457789999999 66552 222121 234678899999998888999999999998988777 789999
Q ss_pred ecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC----ceeEEEecCCCe
Q 011709 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP----SSSIKFVLRESC 443 (479)
Q Consensus 368 ~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~----~~~~~~sp~~~~ 443 (479)
+.+|.+.|+.++|+++|+.++.-+-.|..|..||++..+.++ +...+|.. -.-+...|++..
T Consensus 246 lggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv--------------~~L~rhv~~TNQRI~FDld~~~~~ 311 (406)
T KOG2919|consen 246 LGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV--------------YALERHVGDTNQRILFDLDPKGEI 311 (406)
T ss_pred ecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh--------------hhhhhhccCccceEEEecCCCCce
Confidence 999999999999999999876444448899999999864433 33444443 233445689999
Q ss_pred eeecCCCccccceeEEEEeeccccc
Q 011709 444 LVDNNHGLSYANKKIKIYCHLEALK 468 (479)
Q Consensus 444 l~~~~~~~~~~d~~i~i~~~~~~~~ 468 (479)
|++|+. +|.|++|+....-.
T Consensus 312 LasG~t-----dG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 312 LASGDT-----DGSVRVWDLKDLGN 331 (406)
T ss_pred eeccCC-----CccEEEEecCCCCC
Confidence 999999 99999998776543
No 149
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=3.1e-20 Score=168.77 Aligned_cols=265 Identities=22% Similarity=0.350 Sum_probs=191.0
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
.-|.|+.|.+ +++ ++||..+|.|.||+..+. +.......|.++ |++|+...+|. |+||+.|..|
T Consensus 247 k~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~------------~~~k~~~aH~gg-v~~L~~lr~Gt-llSGgKDRki 310 (626)
T KOG2106|consen 247 KFVLCVTFLE-NGD-VITGDSGGNILIWSKGTN------------RISKQVHAHDGG-VFSLCMLRDGT-LLSGGKDRKI 310 (626)
T ss_pred eEEEEEEEcC-CCC-EEeecCCceEEEEeCCCc------------eEEeEeeecCCc-eEEEEEecCcc-EeecCccceE
Confidence 5699999999 654 669999999999999765 444444588874 99999998886 6669999999
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCC-------CCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGD-------GNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
..||-+-. ...... .+...+.+.....+.++ +.+. ...-.........+|......++.+|+. ..
T Consensus 311 ~~Wd~~y~-k~r~~e-----lPe~~G~iRtv~e~~~di~vGTtrN~iL-~Gt~~~~f~~~v~gh~delwgla~hps~-~q 382 (626)
T KOG2106|consen 311 ILWDDNYR-KLRETE-----LPEQFGPIRTVAEGKGDILVGTTRNFIL-QGTLENGFTLTVQGHGDELWGLATHPSK-NQ 382 (626)
T ss_pred Eecccccc-cccccc-----CchhcCCeeEEecCCCcEEEeeccceEE-EeeecCCceEEEEecccceeeEEcCCCh-hh
Confidence 99993211 111110 01111111111111111 0000 0001111224556799999999999998 67
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
+++++.|+.+++|+ ..+ +... ..-..++.|++|+| .+ .+|.|+..|...+.|..+ ...+.... ...
T Consensus 383 ~~T~gqdk~v~lW~--~~k--~~wt-~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~------~~lv~~~~-d~~ 448 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWN--DHK--LEWT-KIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTET------QDLVTIHT-DNE 448 (626)
T ss_pred eeeccCcceEEEcc--CCc--eeEE-EEecCceeEeeccC-cc-eEEEeeccceEEEEeccc------ceeEEEEe-cCC
Confidence 99999999999999 223 2332 34567889999999 77 999999999999999998 34444434 488
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccc
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSY 453 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~ 453 (479)
++++++|+|+|. .||.|+.|+.|.||-+...++.+.. +-.+.| ..++.+.|++|+++|.+.+-
T Consensus 449 ~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r-----------~~k~~g-s~ithLDwS~Ds~~~~~~S~---- 511 (626)
T KOG2106|consen 449 QLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSR-----------VGKCSG-SPITHLDWSSDSQFLVSNSG---- 511 (626)
T ss_pred ceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEE-----------eeeecC-ceeEEeeecCCCceEEeccC----
Confidence 999999999999 5899999999999999987766533 335556 66999999999999999988
Q ss_pred cceeEEEE
Q 011709 454 ANKKIKIY 461 (479)
Q Consensus 454 ~d~~i~i~ 461 (479)
|-.|..|
T Consensus 512 -d~eiLyW 518 (626)
T KOG2106|consen 512 -DYEILYW 518 (626)
T ss_pred -ceEEEEE
Confidence 7788888
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.4e-21 Score=174.62 Aligned_cols=221 Identities=16% Similarity=0.276 Sum_probs=175.2
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEE
Q 011709 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW 223 (479)
Q Consensus 144 ~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vw 223 (479)
.|++... ...++++|+..+.|+|||+... .+...+.+|+. .|+++.++....+||+++..|.|.|.
T Consensus 83 ~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~k------------l~hr~lkdh~s-tvt~v~YN~~DeyiAsvs~gGdiiih 148 (673)
T KOG4378|consen 83 FCVACAS-QSLYEISGGQSGCVKIWDLRAK------------LIHRFLKDHQS-TVTYVDYNNTDEYIASVSDGGDIIIH 148 (673)
T ss_pred HHHhhhh-cceeeeccCcCceeeehhhHHH------------HHhhhccCCcc-eeEEEEecCCcceeEEeccCCcEEEE
Confidence 3444333 3369999999999999999965 56667899996 69999999999999999999999999
Q ss_pred ecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC-CCCceEEEEEeeCCCcEEEEEecCCe
Q 011709 224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVGDDSC 302 (479)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~ 302 (479)
.+.++.... .+.. ....|.-+.|+|....+|.+++++|.
T Consensus 149 ~~~t~~~tt----------------------------------------~f~~~sgqsvRll~ys~skr~lL~~asd~G~ 188 (673)
T KOG4378|consen 149 GTKTKQKTT----------------------------------------TFTIDSGQSVRLLRYSPSKRFLLSIASDKGA 188 (673)
T ss_pred ecccCcccc----------------------------------------ceecCCCCeEEEeecccccceeeEeeccCCe
Confidence 998754422 1221 23456788999998788999999999
Q ss_pred EEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEec
Q 011709 303 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 382 (479)
Q Consensus 303 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 382 (479)
|.+||+.... |.......|..+...|+|+|.+..+|++.+.|..|.+||++. ......+. ...+.+.++|.+
T Consensus 189 VtlwDv~g~s-p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s------~~s~~~l~-y~~Plstvaf~~ 260 (673)
T KOG4378|consen 189 VTLWDVQGMS-PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS------QASTDRLT-YSHPLSTVAFSE 260 (673)
T ss_pred EEEEeccCCC-cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc------ccccceee-ecCCcceeeecC
Confidence 9999998665 456677799999999999998899999999999999999997 33344343 456899999999
Q ss_pred CCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC-CceeEEEecCC
Q 011709 383 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS-PSSSIKFVLRE 441 (479)
Q Consensus 383 ~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~-~~~~~~~sp~~ 441 (479)
+|.+ |+.|...|.|..||++....+ +.+...|. .|++++|-|.-
T Consensus 261 ~G~~-L~aG~s~G~~i~YD~R~~k~P--------------v~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 261 CGTY-LCAGNSKGELIAYDMRSTKAP--------------VAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceE-EEeecCCceEEEEecccCCCC--------------ceEeeecccceeEEEeeecc
Confidence 9985 789999999999999984222 22333344 49999998764
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.5e-22 Score=196.94 Aligned_cols=218 Identities=20% Similarity=0.382 Sum_probs=177.9
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC-CCcE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYV 211 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~-~~~l 211 (479)
+.+.-.|+|.|..+.|++..+++||+|++||.|.|||+...+...... -.... +.|.+++|+.. ...|
T Consensus 109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~----------~~~~~-~eI~~lsWNrkvqhIL 177 (1049)
T KOG0307|consen 109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG----------SQAPP-SEIKCLSWNRKVSHIL 177 (1049)
T ss_pred HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC----------CCCCc-ccceEeccchhhhHHh
Confidence 445568999999999999888999999999999999999853222110 11122 35899999986 4578
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
++++.+|++.|||++......... ..+....+..++|||++.
T Consensus 178 AS~s~sg~~~iWDlr~~~pii~ls--------------------------------------~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 178 ASGSPSGRAVIWDLRKKKPIIKLS--------------------------------------DTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred hccCCCCCceeccccCCCcccccc--------------------------------------cCCCccceeeeeeCCCCc
Confidence 899999999999998653321111 111124588999999998
Q ss_pred cEEEEEecCC---eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee
Q 011709 292 QEFCSVGDDS---CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 292 ~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
..++++++|. .|.+||+|.-..+ ++.+.+|...|.++.|++.|..+|++++.|+.|.+|+..+ ++.+.++
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP-~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t------gEvl~~~ 292 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSP-LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT------GEVLGEL 292 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCc-hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC------ceEeeec
Confidence 8888888764 6999999987754 6667899999999999998889999999999999999999 8899999
Q ss_pred cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCC
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 406 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~ 406 (479)
.....++..+.|+|....+|+.++.||.|-|+.+....
T Consensus 293 p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 293 PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 98889999999999999899999999999999998754
No 152
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=3.1e-20 Score=168.84 Aligned_cols=301 Identities=18% Similarity=0.314 Sum_probs=205.7
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccc----------------------------cCCCCCC
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA----------------------------VLGATNS 185 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~----------------------------~~~~~~~ 185 (479)
.+...|++.|.++.... ++.+| +|+.|+.|..||-.-...+.. ..+.-..
T Consensus 281 k~~~aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~ 358 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN 358 (626)
T ss_pred eEeeecCCceEEEEEec-CccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence 34449999999999887 77555 599999999999322111111 0011111
Q ss_pred CCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCcccc-ccCCcccccCCCCCceeecCCCCCCCCCCCCC
Q 011709 186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS-ATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264 (479)
Q Consensus 186 ~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (479)
.......+|.+ ....++.+|+.+.+++++.|+.+++|+-....-.. ...+........++ ..+.+...+...+.+
T Consensus 359 ~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg---~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 359 GFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG---VVAVGTATGRWFVLD 434 (626)
T ss_pred CceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcc---eEEEeeccceEEEEe
Confidence 22334578887 47899999999999999999999999932221111 11122222222222 122233344444555
Q ss_pred CCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC
Q 011709 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 344 (479)
Q Consensus 265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~ 344 (479)
..+...+..-.. ..+++.++|+|+| .+||.|+.|+.|.+|-+........+.-..+.++|+.+.|++ |+++|.+-+.
T Consensus 435 ~e~~~lv~~~~d-~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~ 511 (626)
T KOG2106|consen 435 TETQDLVTIHTD-NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSG 511 (626)
T ss_pred cccceeEEEEec-CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccC
Confidence 566444444444 7899999999999 799999999999999998766444444445669999999999 9999999999
Q ss_pred CCcEEEEecCCCCCCCCCCceeee---------------cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccc
Q 011709 345 DNSVRMFDRRNLTSNGVGSPINKF---------------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 409 (479)
Q Consensus 345 dg~I~iwd~~~~~~~~~~~~~~~~---------------~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~ 409 (479)
|-.|..|....... ...+..+ ..|...|..++-+.... ++|+|...|.|++|...-.
T Consensus 512 d~eiLyW~~~~~~~---~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~-~lA~gdd~g~v~lf~yPc~---- 583 (626)
T KOG2106|consen 512 DYEILYWKPSECKQ---ITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEK-LLASGDDFGKVHLFSYPCS---- 583 (626)
T ss_pred ceEEEEEccccCcc---cceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhh-hhhccccCceEEEEccccC----
Confidence 99999994433111 1111111 12334455555555555 7899999999999987653
Q ss_pred cCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 410 EQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 410 ~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.|........||.. +++++|..+.+.+++++. |.+|-.|+.+
T Consensus 584 --------s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~-----D~Si~qW~lv 626 (626)
T KOG2106|consen 584 --------SPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGK-----DTSIMQWRLV 626 (626)
T ss_pred --------CCcccceeeccccceeEEEEEeeCCceEEecCC-----CceEEEEEeC
Confidence 34455667889988 899999999999999997 9999999863
No 153
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=2.4e-20 Score=158.36 Aligned_cols=265 Identities=17% Similarity=0.277 Sum_probs=193.7
Q ss_pred cccccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCC
Q 011709 61 HNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHP 140 (479)
Q Consensus 61 ~~l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 140 (479)
...+.|..-+.|.|+-..... .|+ + ...++|++|.+..-..... .+ ..+...+.-.+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~p----dlL-A-----Ts~D~LRlWri~~ee~~~~---------~~---~~L~~~kns~~~ 150 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYP----DLL-A-----TSSDFLRLWRIGDEESRVE---------LQ---SVLNNNKNSEFC 150 (364)
T ss_pred CCCCCCccceEecCCccccCc----chh-h-----cccCeEEEEeccCcCCcee---------hh---hhhccCcccccC
Confidence 467779999999997422111 221 1 2567888887642111000 00 001122345678
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecCCCc
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKS 219 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~dg~ 219 (479)
+++++..|+.-++++|.+.|-|.+..|||++++. .......+..|.. .|+.++|...+. .++|.|.||.
T Consensus 151 aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~---------~~~vkTQLIAHDK-EV~DIaf~~~s~~~FASvgaDGS 220 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV---------SGTVKTQLIAHDK-EVYDIAFLKGSRDVFASVGADGS 220 (364)
T ss_pred CcccccccccCCcceeEeecccCeEEEEEEeecc---------ccceeeEEEecCc-ceeEEEeccCccceEEEecCCCc
Confidence 8999999999999999999999999999999872 1244667889997 599999998654 8999999999
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC--CCCceEEEEEeeCCCcEEEEE
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG--HEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~ 297 (479)
||+||++...... ..+++ ...+...++|++++++++++-
T Consensus 221 vRmFDLR~leHST---------------------------------------IIYE~p~~~~pLlRLswnkqDpnymATf 261 (364)
T KOG0290|consen 221 VRMFDLRSLEHST---------------------------------------IIYEDPSPSTPLLRLSWNKQDPNYMATF 261 (364)
T ss_pred EEEEEecccccce---------------------------------------EEecCCCCCCcceeeccCcCCchHHhhh
Confidence 9999998654321 11211 145678899999999999986
Q ss_pred ecC-CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEE
Q 011709 298 GDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (479)
Q Consensus 298 ~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 376 (479)
..| ..|.|.|+|....+ +..+.+|.+.|+.++|.|.....|.|+++|..+.+||+..........|+..+. -.+.|+
T Consensus 262 ~~dS~~V~iLDiR~P~tp-va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVN 339 (364)
T KOG0290|consen 262 AMDSNKVVILDIRVPCTP-VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVN 339 (364)
T ss_pred hcCCceEEEEEecCCCcc-eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceee
Confidence 655 46999999998864 566789999999999999889999999999999999999865433345666666 567899
Q ss_pred EEEEecCCCcEEEEEeCCCCEEE
Q 011709 377 CVQWSPDKSSVFGSSAEDGLLNI 399 (479)
Q Consensus 377 ~l~~~p~~~~llas~s~Dg~v~i 399 (479)
.++|++..+--++.+. +..+.|
T Consensus 340 qi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 340 QIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred eeeecccCCCEEEEEe-cCeeeE
Confidence 9999987665565554 444443
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=9.8e-21 Score=162.68 Aligned_cols=223 Identities=17% Similarity=0.227 Sum_probs=170.3
Q ss_pred cEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCC
Q 011709 188 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267 (479)
Q Consensus 188 ~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (479)
...+++|.+ .|++++|+.||++|++++.|++|++|++++-.....
T Consensus 79 ~~~LKgH~~-~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH---------------------------------- 123 (420)
T KOG2096|consen 79 VSVLKGHKK-EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH---------------------------------- 123 (420)
T ss_pred hhhhhccCC-ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh----------------------------------
Confidence 346789998 499999999999999999999999999986221100
Q ss_pred CCCc-eeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCC---C--c-----eeeeccCCCCeEEEEecCCCC
Q 011709 268 VGPR-GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS---P--V-----IKVEKAHDADLHCVDWNPLDD 336 (479)
Q Consensus 268 ~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~--~-----~~~~~~~~~~v~~l~~sp~~~ 336 (479)
+.+ ..+. -+--+.+.|.|+-..+++++....++++|-+...+. + . ......|...+..+-... ++
T Consensus 124 -r~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~ 199 (420)
T KOG2096|consen 124 -RCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NA 199 (420)
T ss_pred -hHhhcccc--CCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-Cc
Confidence 000 1111 123567899999888888888888999998754331 1 1 112335677777777777 88
Q ss_pred cEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC
Q 011709 337 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 416 (479)
Q Consensus 337 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~ 416 (479)
.+|++++.|..|.+||++ |+.+..+......-+..+.+|+|+. +|+++.---|+||.+--......
T Consensus 200 k~imsas~dt~i~lw~lk-------Gq~L~~idtnq~~n~~aavSP~GRF-ia~~gFTpDVkVwE~~f~kdG~f------ 265 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLK-------GQLLQSIDTNQSSNYDAAVSPDGRF-IAVSGFTPDVKVWEPIFTKDGTF------ 265 (420)
T ss_pred eEEEEecCCCcEEEEecC-------CceeeeeccccccccceeeCCCCcE-EEEecCCCCceEEEEEeccCcch------
Confidence 999999999999999998 5888888877777888999999995 67888888899999754211111
Q ss_pred CCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecccccc
Q 011709 417 NYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEALKS 469 (479)
Q Consensus 417 ~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~~~ 469 (479)
.....+|...||.+ |..++|+++...+++.+. ||++++|+.-..|+.
T Consensus 266 -qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk-----DG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 266 -QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK-----DGKWRIWDTDVRYEA 313 (420)
T ss_pred -hhhhhhheeccchhheeeeeeCCCcceeEEEec-----CCcEEEeeccceEec
Confidence 11245789999998 999999999999999999 999999988777654
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=163.39 Aligned_cols=250 Identities=17% Similarity=0.266 Sum_probs=183.0
Q ss_pred cEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCcEEEecCCCcEEEEecCCCccc
Q 011709 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSGGKDKSVVLWSIQDHITS 231 (479)
Q Consensus 154 ~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~l~s~s~dg~i~vwd~~~~~~~ 231 (479)
..+|++-..|+|++||..++ +....+.+|.. .++.+.|... ...+.+|+.||+|++||++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg------------~~l~~fk~~~~-~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~ 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG------------QLLEEFKGPPA-TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES 107 (376)
T ss_pred eeEEEEecCCeEEEEeccch------------hhhheecCCCC-cccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence 57889999999999999997 66778888886 5789999773 457889999999999999864332
Q ss_pred cccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCC-CceEEEEEeeCCCcEEEEEe----cCCeEEEE
Q 011709 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-DTVEDVTFCPSSAQEFCSVG----DDSCLILW 306 (479)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~----~dg~i~iw 306 (479)
. +..+..+. .+..+++....+ +++++|. .|-.|.+|
T Consensus 108 a--------------------------------------~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lw 148 (376)
T KOG1188|consen 108 A--------------------------------------RISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLW 148 (376)
T ss_pred h--------------------------------------heeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEE
Confidence 1 12233343 456666665555 5777765 36789999
Q ss_pred eCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCc
Q 011709 307 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 386 (479)
Q Consensus 307 d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 386 (479)
|+|..+.++......|...|+++.|+|.+.++|++||.||.|.|||+....+ ...+...-.|...|.++.|...+-.
T Consensus 149 DvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E---eDaL~~viN~~sSI~~igw~~~~yk 225 (376)
T KOG1188|consen 149 DVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE---EDALLHVINHGSSIHLIGWLSKKYK 225 (376)
T ss_pred EeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc---hhhHHHhhcccceeeeeeeecCCcc
Confidence 9999886555556789999999999999999999999999999999987432 2334444457888999999988722
Q ss_pred EEEEEeCCCCEEEEeCCCCCccccCCCC-------------------------------CC----------------CCC
Q 011709 387 VFGSSAEDGLLNIWDYEKVGKKVEQGPR-------------------------------TT----------------NYP 419 (479)
Q Consensus 387 llas~s~Dg~v~iwd~~~~~~~~~~~~~-------------------------------~~----------------~~~ 419 (479)
-+.+-+...+..+|+++.+......+.. .. ..-
T Consensus 226 rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~ 305 (376)
T KOG1188|consen 226 RIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLL 305 (376)
T ss_pred eEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccccccc
Confidence 2447788999999999985322111100 00 000
Q ss_pred CeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 420 AGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 420 ~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
..+..-++||.. |.++.|...+.++.+||. ||-+.+|..
T Consensus 306 ~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE-----DG~l~~Wk~ 345 (376)
T KOG1188|consen 306 TEPAILQGGHEEIVRDILFDVKNDVLYTGGE-----DGLLQAWKV 345 (376)
T ss_pred CccccccCCcHHHHHHHhhhcccceeeccCC-----CceEEEEec
Confidence 011222344555 788999999999999999 999999973
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.4e-19 Score=154.98 Aligned_cols=261 Identities=14% Similarity=0.213 Sum_probs=178.8
Q ss_pred eCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecC-CCCcEEEEEeCCCcEEEEECC
Q 011709 93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELP-QNTKIVATHTDSPDVLIWDVE 171 (479)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~~lat~s~dg~i~iwd~~ 171 (479)
++++.+..++||...-. .+.--.......|.+.|.+|.|-+ .-|+.+|+++.|+++.||.-.
T Consensus 29 AtCSsDq~vkI~d~~~~-----------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~ 91 (361)
T KOG2445|consen 29 ATCSSDQTVKIWDSTSD-----------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ 91 (361)
T ss_pred eeccCCCcEEEEeccCC-----------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeec
Confidence 56778888888864211 111122456678999999999854 678999999999999999864
Q ss_pred CCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCcee
Q 011709 172 AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 249 (479)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (479)
...... .........++..... .|+.+.|.|. |-.|++++.||.||||+.-+...........
T Consensus 92 ~~~~~~---~~~~Wv~~ttl~Dsrs-sV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~----------- 156 (361)
T KOG2445|consen 92 EKSEEA---HGRRWVRRTTLVDSRS-SVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH----------- 156 (361)
T ss_pred cccccc---ccceeEEEEEeecCCc-ceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh-----------
Confidence 221110 0001223344555554 5899999997 6689999999999999976432211111000
Q ss_pred ecCCCCCCCCCCCCCCCCCC-CceeecCCCCceEEEEEeeC--CCcEEEEEecC-----CeEEEEeCCCCC--CCceeee
Q 011709 250 KQSPKPGDGNDKAADGPSVG-PRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDD-----SCLILWDARVGT--SPVIKVE 319 (479)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d-----g~i~iwd~~~~~--~~~~~~~ 319 (479)
..+ .+.....+.....|+.|+|. .+.+|+.|+.+ +.+.||...... ...+..+
T Consensus 157 -----------------Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 157 -----------------EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred -----------------hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc
Confidence 000 00112235667889999874 23467777766 478888766543 3345566
Q ss_pred ccCCCCeEEEEecCCCC---cEEEEEeCCCcEEEEecCCCC----------CCC----CCCceeeecCCCCcEEEEEEec
Q 011709 320 KAHDADLHCVDWNPLDD---NLILTGSADNSVRMFDRRNLT----------SNG----VGSPINKFEGHSAAVLCVQWSP 382 (479)
Q Consensus 320 ~~~~~~v~~l~~sp~~~---~~l~tgs~dg~I~iwd~~~~~----------~~~----~~~~~~~~~~h~~~v~~l~~~p 382 (479)
.+|..+|+.++|.|.-| .+||+++.|| |+||.++... ... .-+.+..+..|.+.|..+.|+-
T Consensus 220 ~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm 298 (361)
T KOG2445|consen 220 PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM 298 (361)
T ss_pred CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee
Confidence 79999999999999544 5899999999 9999998421 100 1234556789999999999999
Q ss_pred CCCcEEEEEeCCCCEEEEeCCC
Q 011709 383 DKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 383 ~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.|. +|+|.|.||.||+|...-
T Consensus 299 tGt-iLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 299 TGT-ILSSTGDDGCVRLWKANY 319 (361)
T ss_pred eee-EEeecCCCceeeehhhhh
Confidence 998 789999999999998654
No 157
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=2.2e-19 Score=158.66 Aligned_cols=214 Identities=22% Similarity=0.354 Sum_probs=168.5
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC-CCcEEEe
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSG 214 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~-~~~l~s~ 214 (479)
..+|+++|..++|+|.+.+.||+||+|.+|.||++........ -..+...|.||.. .|..++|+|. .+.|+|+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~-----ltepvv~L~gH~r-rVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD-----LTEPVVELYGHQR-RVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-----cccceEEEeecce-eEEEEeecccchhhHhhc
Confidence 3589999999999999999999999999999999987643322 2367889999997 5889999998 4589999
Q ss_pred cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEE
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (479)
+.|.+|.+||+.++... ..+. |...|.++.|+.+| .+|
T Consensus 151 g~Dn~v~iWnv~tgeal----------------------------------------i~l~-hpd~i~S~sfn~dG-s~l 188 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEAL----------------------------------------ITLD-HPDMVYSMSFNRDG-SLL 188 (472)
T ss_pred cCCceEEEEeccCCcee----------------------------------------eecC-CCCeEEEEEeccCC-cee
Confidence 99999999999875432 3344 99999999999999 789
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeeccCCCC-eEEEEecCCCCcEEEEEeC---CCcEEEEecCCCCCCCCCCceeeecC
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDAD-LHCVDWNPLDDNLILTGSA---DNSVRMFDRRNLTSNGVGSPINKFEG 370 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~l~~sp~~~~~l~tgs~---dg~I~iwd~~~~~~~~~~~~~~~~~~ 370 (479)
++.+.|..|||||.|+++ ++..-.+|.+. -..+.|-. ++.++-||-. +..+-+||..+++. .-...++..
T Consensus 189 ~TtckDKkvRv~dpr~~~--~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~e---P~~~~elDt 262 (472)
T KOG0303|consen 189 CTTCKDKKVRVIDPRRGT--VVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEE---PIALQELDT 262 (472)
T ss_pred eeecccceeEEEcCCCCc--EeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcccccC---cceeEEecc
Confidence 999999999999999998 56555567643 34455665 6775555543 67899999988653 223344543
Q ss_pred CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
...|.---|.++...+.++|-.|+.||-|.+..
T Consensus 263 -SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 263 -SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred -CCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 345655667888887777777799999999987
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=4.5e-20 Score=159.35 Aligned_cols=258 Identities=21% Similarity=0.304 Sum_probs=189.7
Q ss_pred cCCCceeEEEecCC---CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC-CcEEE
Q 011709 138 IHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLS 213 (479)
Q Consensus 138 ~h~~~V~~l~~~p~---~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~-~~l~s 213 (479)
.|+..-..++|.-+ ..-+||.|+.-|.|+|.|+.++ +....+.+|.. .|+.|.+.|+. +++++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~------------~~~~~~~ghG~-sINeik~~p~~~qlvls 153 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG------------QCSKNYRGHGG-SINEIKFHPDRPQLVLS 153 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh------------hhccceeccCc-cchhhhcCCCCCcEEEE
Confidence 35556666666542 2348888889999999999988 66778999997 59999999985 58999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
||.|.+|++|++++..+...+ .-+.+|...|.++.|++++ .+
T Consensus 154 ~SkD~svRlwnI~~~~Cv~Vf-------------------------------------GG~egHrdeVLSvD~~~~g-d~ 195 (385)
T KOG1034|consen 154 ASKDHSVRLWNIQTDVCVAVF-------------------------------------GGVEGHRDEVLSVDFSLDG-DR 195 (385)
T ss_pred ecCCceEEEEeccCCeEEEEe-------------------------------------cccccccCcEEEEEEcCCC-Ce
Confidence 999999999999887664333 2356899999999999999 58
Q ss_pred EEEEecCCeEEEEeCCCCCC--------------------------CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCc
Q 011709 294 FCSVGDDSCLILWDARVGTS--------------------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 347 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~ 347 (479)
+++|+.|.+|++|++...+. |...+...|...|.|+.|- ++++++-|.++.
T Consensus 196 i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscena 272 (385)
T KOG1034|consen 196 IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENA 272 (385)
T ss_pred eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCce
Confidence 99999999999999984321 0011223577778888884 589999999999
Q ss_pred EEEEecCCCCC--------CCCCCceeeecCCCCcEEEEEE--ecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCC
Q 011709 348 VRMFDRRNLTS--------NGVGSPINKFEGHSAAVLCVQW--SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 417 (479)
Q Consensus 348 I~iwd~~~~~~--------~~~~~~~~~~~~h~~~v~~l~~--~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~ 417 (479)
|..|..-...+ +.....+.++.-....|.-+.| +|-+. +||.|...|.|.+|||+.....
T Consensus 273 I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~ep~--------- 342 (385)
T KOG1034|consen 273 IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNNEPP--------- 342 (385)
T ss_pred EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCCCCc---------
Confidence 99998722111 0112234455555566666554 56566 5889999999999999984111
Q ss_pred CCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 418 YPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 418 ~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
..+.+. -+.+-..|...+|+.|+..|+...+ |+.|.=|+...
T Consensus 343 ~~ttl~-~s~~~~tVRQ~sfS~dgs~lv~vcd-----d~~Vwrwdrv~ 384 (385)
T KOG1034|consen 343 KCTTLT-HSKSGSTVRQTSFSRDGSILVLVCD-----DGTVWRWDRVS 384 (385)
T ss_pred cCceEE-eccccceeeeeeecccCcEEEEEeC-----CCcEEEEEeec
Confidence 111221 2222334899999999999999999 99999888653
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=6.1e-20 Score=166.54 Aligned_cols=246 Identities=20% Similarity=0.289 Sum_probs=186.8
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEE
Q 011709 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~v 222 (479)
|+++.|...+.-.+|+.+.|..|++|.-..... .......+.|.. -.|++......++++|+..+.|+|
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~--------~Vp~~~k~~gd~---~~Cv~~~s~S~y~~sgG~~~~Vki 105 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP--------EVPRVRKLTGDN---AFCVACASQSLYEISGGQSGCVKI 105 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCC--------ccceeeccccch---HHHHhhhhcceeeeccCcCceeee
Confidence 899999884444455556778899997655411 111222233332 246665556689999999999999
Q ss_pred EecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCe
Q 011709 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 302 (479)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 302 (479)
||++.... .+.+++|...|+++.++..+ .++++++..|.
T Consensus 106 wdl~~kl~----------------------------------------hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGd 144 (673)
T KOG4378|consen 106 WDLRAKLI----------------------------------------HRFLKDHQSTVTYVDYNNTD-EYIASVSDGGD 144 (673)
T ss_pred hhhHHHHH----------------------------------------hhhccCCcceeEEEEecCCc-ceeEEeccCCc
Confidence 99974322 25678899999999999887 68999999999
Q ss_pred EEEEeCCCCCCCceeeec-cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceee-ecCCCCcEEEEEE
Q 011709 303 LILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQW 380 (479)
Q Consensus 303 i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~ 380 (479)
|.|..+.++.. ...+. +....|.-+.|+|....+|.+++++|.|.+||+.. ..++.. ...|..+...|+|
T Consensus 145 iiih~~~t~~~--tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g------~sp~~~~~~~HsAP~~gicf 216 (673)
T KOG4378|consen 145 IIIHGTKTKQK--TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG------MSPIFHASEAHSAPCRGICF 216 (673)
T ss_pred EEEEecccCcc--ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC------CCcccchhhhccCCcCccee
Confidence 99999998873 33332 22455668999997778899999999999999987 445544 4679999999999
Q ss_pred ecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEE
Q 011709 381 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKI 460 (479)
Q Consensus 381 ~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i 460 (479)
+|..+.|||+.|.|..|.+||++.. .. ...+.+ ..+.++++|+++|.+|++|.. .|.|..
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~-~s----------~~~l~y----~~Plstvaf~~~G~~L~aG~s-----~G~~i~ 276 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQ-AS----------TDRLTY----SHPLSTVAFSECGTYLCAGNS-----KGELIA 276 (673)
T ss_pred cCCccceEEEecccceEEEeecccc-cc----------cceeee----cCCcceeeecCCceEEEeecC-----CceEEE
Confidence 9999999999999999999999862 11 112333 245689999999999999999 899999
Q ss_pred Eeeccccc
Q 011709 461 YCHLEALK 468 (479)
Q Consensus 461 ~~~~~~~~ 468 (479)
|+....-.
T Consensus 277 YD~R~~k~ 284 (673)
T KOG4378|consen 277 YDMRSTKA 284 (673)
T ss_pred EecccCCC
Confidence 98765533
No 160
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.85 E-value=1.4e-20 Score=170.79 Aligned_cols=229 Identities=18% Similarity=0.317 Sum_probs=174.5
Q ss_pred ccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCce
Q 011709 193 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG 272 (479)
Q Consensus 193 ~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (479)
.|. ..|.++..+...+++.+|+ .|.|+|||+....... ++.
T Consensus 417 ~HG-EvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~-------------------------------------Pvs 457 (705)
T KOG0639|consen 417 AHG-EVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKS-------------------------------------PVS 457 (705)
T ss_pred ccC-cEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCC-------------------------------------ccc
Confidence 454 4688899999999999999 5889999997532111 111
Q ss_pred ee--cCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEE
Q 011709 273 IY--NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM 350 (479)
Q Consensus 273 ~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~i 350 (479)
.+ ......|.++...|+| +.|++|++-.++.|||+......+...+........+++.+| |.++.+++..||.|.|
T Consensus 458 qLdcl~rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~v 535 (705)
T KOG0639|consen 458 QLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAV 535 (705)
T ss_pred cccccCcccceeeeEecCCC-ceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEE
Confidence 11 1234578999999999 789999999999999999877433334444445678899999 9999999999999999
Q ss_pred EecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCC----------------
Q 011709 351 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR---------------- 414 (479)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~---------------- 414 (479)
||+++ ...+..|.+|.+.+.||..+++|.. |-||+-|.+||-||++.+.+.+...-.
T Consensus 536 wDLhn------q~~VrqfqGhtDGascIdis~dGtk-lWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWla 608 (705)
T KOG0639|consen 536 WDLHN------QTLVRQFQGHTDGASCIDISKDGTK-LWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLA 608 (705)
T ss_pred EEccc------ceeeecccCCCCCceeEEecCCCce-eecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCcccee
Confidence 99999 6789999999999999999999997 569999999999999996544322110
Q ss_pred --CCCCCCee-------EEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecccccceeecc
Q 011709 415 --TTNYPAGL-------FFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEALKSFQIKK 474 (479)
Q Consensus 415 --~~~~~~~l-------~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~ 474 (479)
..+...++ .+...-|.+ |.+++|.+-|++++++|. |+-+..|...---..|+.+.
T Consensus 609 vGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGk-----DnlLnawrtPyGasiFqskE 673 (705)
T KOG0639|consen 609 VGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGK-----DNLLNAWRTPYGASIFQSKE 673 (705)
T ss_pred eecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCc-----hhhhhhccCccccceeeccc
Confidence 00011111 222333555 789999999999999999 89999998777767676654
No 161
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=4e-20 Score=170.52 Aligned_cols=226 Identities=17% Similarity=0.349 Sum_probs=178.8
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
.....|.+.|..+.|.| ....|++|+.||+|.+|+++... ........++.++++|.+ +|.|++..+++.++++
T Consensus 288 ~tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~----~s~~~~~epi~tfraH~g-PVl~v~v~~n~~~~ys 361 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAK----KSAEKDVEPILTFRAHEG-PVLCVVVPSNGEHCYS 361 (577)
T ss_pred eeeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccC----CccccceeeeEEEecccC-ceEEEEecCCceEEEe
Confidence 46788999999999999 55689999999999999995421 122234578999999998 6899999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
|+.||+|+.|++.......... ........+.||+..|..++++... ..
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~------------------------------dp~vl~~~l~Ghtdavw~l~~s~~~-~~ 410 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSY------------------------------DPSVLSGTLLGHTDAVWLLALSSTK-DR 410 (577)
T ss_pred eccCceeeeeccCCCCCccccc------------------------------Ccchhccceeccccceeeeeecccc-cc
Confidence 9999999999885221110000 0001225788999999999999987 56
Q ss_pred EEEEecCCeEEEEeCCCCCC-----------Cce-------------------------------eeec-------cCCC
Q 011709 294 FCSVGDDSCLILWDARVGTS-----------PVI-------------------------------KVEK-------AHDA 324 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~-----------~~~-------------------------------~~~~-------~~~~ 324 (479)
|++|+.||++++|+...... |+. ..+. ....
T Consensus 411 Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~ 490 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP 490 (577)
T ss_pred eeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence 99999999999998765432 000 0000 0113
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 325 ~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.++-+.++| ...+.+++..|+.|+++|..+ +.+++....|...++++++.|+|.+ |++++.|+.+++|.+..
T Consensus 491 ~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~------~~~l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 491 QINKVVSHP-TADITFTAHEDRSIRFFDNKT------GKILHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ccceEEecC-CCCeeEecccCCceecccccc------cccchheeeccceecceeecCCCce-EEeecCCceeehhhccc
Confidence 567788888 789999999999999999999 8999999999999999999999996 67999999999999865
No 162
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=6.9e-19 Score=164.41 Aligned_cols=234 Identities=10% Similarity=0.102 Sum_probs=161.0
Q ss_pred cEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE-EEecCCCcEEEEecCCCcccc
Q 011709 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSS 232 (479)
Q Consensus 154 ~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l-~s~s~dg~i~vwd~~~~~~~~ 232 (479)
+++++++.|+.|++||+.++ +....+.++.. +.+++|+|+++.+ ++++.++.|++||+.++...
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~------------~~~~~~~~~~~--~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~- 66 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL------------EVTRTFPVGQR--PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI- 66 (300)
T ss_pred cEEEEecCCCEEEEEECCCC------------ceEEEEECCCC--CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-
Confidence 57899999999999999876 44556666553 5789999999876 56778999999998754321
Q ss_pred ccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCC
Q 011709 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT 312 (479)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 312 (479)
..+..+. .+..++|+|++..++++++.|+.|++||+++.+
T Consensus 67 ---------------------------------------~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 67 ---------------------------------------GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred ---------------------------------------EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence 1122222 245789999985555666778999999999866
Q ss_pred CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC-cEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEE
Q 011709 313 SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 391 (479)
Q Consensus 313 ~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~ 391 (479)
.+..+. +...+.+++|+| ++.++++++.++ .+.+||.+. +..+..+. ....+..++|+|++..+++++
T Consensus 107 --~~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 107 --VLAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKT------YEIVDNVL-VDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred --EEeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCC------CeEEEEEE-cCCCccEEEECCCCCEEEEEc
Confidence 444443 334568899999 999999988875 577789876 44444333 233457899999999766676
Q ss_pred eCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 392 AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 392 s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
..++.|.+||+... .......... ...+.+......++|+|++++++.+..+ ++.|.+|+..
T Consensus 176 ~~~~~v~i~d~~~~-~~~~~~~~~~------~~~~~~~~~~~~i~~s~dg~~~~~~~~~----~~~i~v~d~~ 237 (300)
T TIGR03866 176 EIGGTVSVIDVATR-KVIKKITFEI------PGVHPEAVQPVGIKLTKDGKTAFVALGP----ANRVAVVDAK 237 (300)
T ss_pred CCCCEEEEEEcCcc-eeeeeeeecc------cccccccCCccceEECCCCCEEEEEcCC----CCeEEEEECC
Confidence 67999999999874 2211100000 0001111224678999999986554332 6679999764
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=9.9e-20 Score=161.48 Aligned_cols=183 Identities=21% Similarity=0.339 Sum_probs=141.2
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCc
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~ 219 (479)
..+|..+.|.+...+.||||+.|..|+||-+........ .........|..|+. +|+++.|+|+|..|+||+.+|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~---~~~V~y~s~Ls~H~~-aVN~vRf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG---DMKVEYLSSLSRHTR-AVNVVRFSPDGELLASGGDGGE 88 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC---ceeEEEeecccCCcc-eeEEEEEcCCcCeeeecCCCce
Confidence 458999999996666999999999999999987743321 012244556788887 6999999999999999999999
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
|.+|....-... ... . ....+.+.......+.+|...|.+++|+|++ +++++++-
T Consensus 89 v~lWk~~~~~~~---~~d--------------------~-e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~ 143 (434)
T KOG1009|consen 89 VFLWKQGDVRIF---DAD--------------------T-EADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSV 143 (434)
T ss_pred EEEEEecCcCCc---ccc--------------------c-hhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeec
Confidence 999987641100 000 0 0000112233346778899999999999999 89999999
Q ss_pred CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecC
Q 011709 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~ 354 (479)
|..+++||+..+. +...+..|...+..++|.| -.+++++-+.|...+++++.
T Consensus 144 dns~~l~Dv~~G~--l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 144 DNSVRLWDVHAGQ--LLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred cceEEEEEeccce--eEeeccccccccceeecch-hhhhhhhhccCcccceeeee
Confidence 9999999999999 7888889999999999999 78888888888866666543
No 164
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=3.5e-21 Score=184.54 Aligned_cols=245 Identities=22% Similarity=0.379 Sum_probs=189.4
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
+.++++|..+|+|+.|.. .+.++++|++|.-|+||..++. .++....||.+ .|+.++.+.++.+++
T Consensus 183 ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~------------~~lAs~rGhs~-ditdlavs~~n~~ia 248 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETA------------RCLASCRGHSG-DITDLAVSSNNTMIA 248 (1113)
T ss_pred HHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccch------------hhhccCCCCcc-ccchhccchhhhhhh
Confidence 345679999999999988 8899999999999999998887 77788999998 489999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
++|.|..|++|.+.++ .++..+.+|++.|++++|+|..
T Consensus 249 aaS~D~vIrvWrl~~~----------------------------------------~pvsvLrghtgavtaiafsP~~-- 286 (1113)
T KOG0644|consen 249 AASNDKVIRVWRLPDG----------------------------------------APVSVLRGHTGAVTAIAFSPRA-- 286 (1113)
T ss_pred hcccCceEEEEecCCC----------------------------------------chHHHHhccccceeeeccCccc--
Confidence 9999999999998543 3457889999999999999843
Q ss_pred EEEEEecCCeEEEEeCC-CCCC----Cc-------ee----------ee------ccCCCCeEEEEecCCCCcEEEEEe-
Q 011709 293 EFCSVGDDSCLILWDAR-VGTS----PV-------IK----------VE------KAHDADLHCVDWNPLDDNLILTGS- 343 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~-~~~~----~~-------~~----------~~------~~~~~~v~~l~~sp~~~~~l~tgs- 343 (479)
+.+.||++++||.+ .... |. +. .. ......+.+++|.. ..-.+++++
T Consensus 287 ---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-~~lif~t~ss 362 (1113)
T KOG0644|consen 287 ---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS-NLLIFVTRSS 362 (1113)
T ss_pred ---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc-cceEEEeccc
Confidence 78899999999998 1110 00 00 00 00011122233332 222333333
Q ss_pred ----------CCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCC
Q 011709 344 ----------ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 413 (479)
Q Consensus 344 ----------~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~ 413 (479)
.+-.+.+|++-. +..++.+.+|...+..+.++|.+..+..+++.||...|||+-.+
T Consensus 363 d~~~~~~~ar~~~~~~vwnl~~------g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg-------- 428 (1113)
T KOG0644|consen 363 DLSSIVVTARNDHRLCVWNLYT------GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG-------- 428 (1113)
T ss_pred cccccceeeeeeeEeeeeeccc------chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccC--------
Confidence 344566777776 77888889999999999999999988889999999999999884
Q ss_pred CCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 414 RTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 414 ~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
.|-...+ .||..+.+.+||+||..++...+ .|.+.|..
T Consensus 429 ----~pik~y~--~gh~kl~d~kFSqdgts~~lsd~-----hgql~i~g 466 (1113)
T KOG0644|consen 429 ----IPIKHYF--IGHGKLVDGKFSQDGTSIALSDD-----HGQLYILG 466 (1113)
T ss_pred ----Ccceeee--cccceeeccccCCCCceEecCCC-----CCceEEec
Confidence 3333444 56888999999999999988887 78888774
No 165
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=6.6e-20 Score=173.13 Aligned_cols=213 Identities=22% Similarity=0.303 Sum_probs=172.7
Q ss_pred EEEecCCCceeEEEecCC--CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC--C
Q 011709 134 HKTIIHPGEVNRIRELPQ--NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE--P 209 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~--~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~--~ 209 (479)
..+-.|..+|.|+.|+-. ...+||+++.|+-|+|||+... ..++.++.+|.. .|+++.|..+| .
T Consensus 495 ~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-----------y~l~qtld~HSs-sITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 495 CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-----------YDLVQTLDGHSS-SITSVKFACNGLNR 562 (1080)
T ss_pred hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-----------cchhhhhccccc-ceeEEEEeecCCce
Confidence 345689999999999863 4569999999999999999875 256778999997 49999999887 6
Q ss_pred cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC
Q 011709 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (479)
Q Consensus 210 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (479)
.+++++.|+.|.+ +......... .-+..+-......+++++..|.
T Consensus 563 ~MiscGADksimF-r~~qk~~~g~----------------------------------~f~r~t~t~~ktTlYDm~Vdp~ 607 (1080)
T KOG1408|consen 563 KMISCGADKSIMF-RVNQKASSGR----------------------------------LFPRHTQTLSKTTLYDMAVDPT 607 (1080)
T ss_pred EEEeccCchhhhe-ehhccccCce----------------------------------eccccccccccceEEEeeeCCC
Confidence 8999999998764 3321100000 0000111112346899999998
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCCCceeeec---cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee
Q 011709 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
. .++++++.|..|+|||+.+++ ..+.++ .|.+....+...| .+.|||+.+.|+++.++|.-+ ++++.
T Consensus 608 ~-k~v~t~cQDrnirif~i~sgK--q~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~s------gEcvA 677 (1080)
T KOG1408|consen 608 S-KLVVTVCQDRNIRIFDIESGK--QVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVS------GECVA 677 (1080)
T ss_pred c-ceEEEEecccceEEEeccccc--eeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEecc------chhhh
Confidence 8 689999999999999999998 455554 5778889999999 999999999999999999999 89999
Q ss_pred eecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 367 ~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++.||...|+.+.|.+|.++| ++.+.||.|.||.+..
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHl-ISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHL-ISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhcCcchheeeeeecccchhh-eeecCCceEEEEECch
Confidence 999999999999999999985 5999999999999875
No 166
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.8e-19 Score=173.77 Aligned_cols=223 Identities=18% Similarity=0.289 Sum_probs=175.0
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg 218 (479)
|...|.+++. +.+.|++|+.+++|.+|.+..+. ....+...+- .+.+++|+.+|+++|.||.|-
T Consensus 55 ~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~------------~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~ 118 (933)
T KOG1274|consen 55 SGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSGE------------EDTILARFTL-PIRDLAVSGSGKMIAAGSDDT 118 (933)
T ss_pred cCceeEEEee---cccceEEeeccceEEEeeCCCCC------------ccceeeeeec-cceEEEEecCCcEEEeecCce
Confidence 7778888876 45589999999999999999872 2222333332 578999999999999999999
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (479)
.|++-++.+... ...+++|.++|.++.|+|.+ .+||+.+
T Consensus 119 ~vK~~~~~D~s~----------------------------------------~~~lrgh~apVl~l~~~p~~-~fLAvss 157 (933)
T KOG1274|consen 119 AVKLLNLDDSSQ----------------------------------------EKVLRGHDAPVLQLSYDPKG-NFLAVSS 157 (933)
T ss_pred eEEEEeccccch----------------------------------------heeecccCCceeeeeEcCCC-CEEEEEe
Confidence 999999865322 27788999999999999999 7999999
Q ss_pred cCCeEEEEeCCCCCCCceeeecc--------CCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec-
Q 011709 299 DDSCLILWDARVGTSPVIKVEKA--------HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE- 369 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~--------~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~- 369 (479)
-||.|++||+.++. +..++.+ ....+..++|+| ++..++..+.|+.|.+|+... +.....+.
T Consensus 158 ~dG~v~iw~~~~~~--~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~------we~~f~Lr~ 228 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGI--LSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKG------WELQFKLRD 228 (933)
T ss_pred cCceEEEEEcccch--hhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCC------ceeheeecc
Confidence 99999999999877 3333321 145677899999 777888888999999999998 55555553
Q ss_pred -CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeee
Q 011709 370 -GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVD 446 (479)
Q Consensus 370 -~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~ 446 (479)
.+...+..++|+|.|.| ||+++.||.|.|||+.+.. .|.-...|.+++|.|++..+-.
T Consensus 229 ~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t~~------------------~~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDTHE------------------RHEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred cccccceEEEEEcCCCcE-EeeeccCCcEEEEecccch------------------hccccceeEEEecCCCCCeeEE
Confidence 34455999999999997 7899999999999998621 1222244789999998765433
No 167
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=2.1e-19 Score=169.40 Aligned_cols=295 Identities=15% Similarity=0.224 Sum_probs=199.4
Q ss_pred eEEEecCCCceeEEEecCCCCc---EEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC
Q 011709 133 KHKTIIHPGEVNRIRELPQNTK---IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 209 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~---~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~ 209 (479)
...+-+|.++|+|+.|.| ... .+++|+.|+.|.+|.++.. ....+..+.+|.. .+++++....
T Consensus 47 ~t~l~GH~a~VnC~~~l~-~s~~~a~~vsG~sD~~v~lW~l~~~----------~~~~i~~~~g~~~---~~~cv~a~~~ 112 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLP-TSEIVAEMVSGDSDGRVILWKLRDE----------YLIKIYTIQGHCK---ECVCVVARSS 112 (764)
T ss_pred EEeccCCccceEEEEEcc-cccccceEEEccCCCcEEEEEEeeh----------heEEEEeecCcce---eEEEEEeeee
Confidence 445669999999999998 444 7999999999999999843 2355667777664 3555553333
Q ss_pred cEEEecCCCcEEEEecCCCcc--ccccCCccc------ccCCCCCceeecCCCCCCCCCCCCCC--CCCCCceeecCCCC
Q 011709 210 YVLSGGKDKSVVLWSIQDHIT--SSATDPATA------KSAGSSGSIIKQSPKPGDGNDKAADG--PSVGPRGIYNGHED 279 (479)
Q Consensus 210 ~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~ 279 (479)
...+...|+++.+||.+.... ......... ............+.+.....+.++.. .....+..+.||..
T Consensus 113 ~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~D 192 (764)
T KOG1063|consen 113 VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTD 192 (764)
T ss_pred EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccch
Confidence 333336899999999954431 000000000 00001111222222222222222222 24456678899999
Q ss_pred ceEEEEEeeCC--CcEEEEEecCCeEEEEeCCCCC----------------CC---ce----------eeeccCCCCeEE
Q 011709 280 TVEDVTFCPSS--AQEFCSVGDDSCLILWDARVGT----------------SP---VI----------KVEKAHDADLHC 328 (479)
Q Consensus 280 ~v~~l~~~~~~--~~~l~s~~~dg~i~iwd~~~~~----------------~~---~~----------~~~~~~~~~v~~ 328 (479)
.|.+++|...+ ..+++|+|.|..||||.+.-.. .+ .. ..+.+|...|++
T Consensus 193 WIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~s 272 (764)
T KOG1063|consen 193 WIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYS 272 (764)
T ss_pred hhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEE
Confidence 99999998754 3689999999999999875332 00 01 122489999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCc-----eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCC
Q 011709 329 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP-----INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 329 l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-----~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~ 403 (479)
+.|+| .+..|++++.|.++.+|...... |-- +-.+.+..+...+..|+|++.. +++-+.-|-.++|-..
T Consensus 273 v~W~p-~~~~LLSASaDksmiiW~pd~~t----GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~-ii~~g~~Gg~hlWkt~ 346 (764)
T KOG1063|consen 273 VWWHP-EGLDLLSASADKSMIIWKPDENT----GIWVDVVRLGEVGGSAGGFWGGLWSPNSNV-IIAHGRTGGFHLWKTK 346 (764)
T ss_pred EEEcc-chhhheecccCcceEEEecCCcc----ceEEEEEEeecccccccceeeEEEcCCCCE-EEEecccCcEEEEecc
Confidence 99999 88899999999999999877632 211 2223344567889999999985 5588889999999833
Q ss_pred CCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 404 KVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.. ......-...||.. |.+++|.|.|.+|+++|. |.+-|+|...
T Consensus 347 d~------------~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~-----DQTTRlFa~w 391 (764)
T KOG1063|consen 347 DK------------TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL-----DQTTRLFARW 391 (764)
T ss_pred Cc------------cceeeccccccccccceeeeecCCCCEEEEecc-----ccceeeeccc
Confidence 21 12233446789987 999999999999999999 8888887544
No 168
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=3.9e-19 Score=149.14 Aligned_cols=290 Identities=14% Similarity=0.190 Sum_probs=191.1
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
....+|.+.|+++.|-. ++ +|.+|..-|.|++|++++. +....+++|....|+.+.--|+ ..|.+
T Consensus 8 fvLRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~------------r~~~~~r~~g~~~it~lq~~p~-d~l~t 72 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTE------------RDLPLIRLFGRLFITNLQSIPN-DSLDT 72 (323)
T ss_pred eEeccccchheehhhcc-ch-hhhcccccceEEEEEeecC------------ccchhhhhhccceeeceeecCC-cchhh
Confidence 33449999999999976 33 5899999999999999988 5566677555557888888887 56888
Q ss_pred ecCCCcEEEEecCCCccccc---------cCCcccccCCCCCc-eeecCCCCCCCCCCCCCCCCCCCceeec----CCCC
Q 011709 214 GGKDKSVVLWSIQDHITSSA---------TDPATAKSAGSSGS-IIKQSPKPGDGNDKAADGPSVGPRGIYN----GHED 279 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~ 279 (479)
-+.|+.+.+|++........ +...... ..+... .....+..+.......|......+.... +..+
T Consensus 73 qgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~-~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klg 151 (323)
T KOG0322|consen 73 QGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLV-KKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLG 151 (323)
T ss_pred cCCCceEEEEEccCcceEEEeeeeccccccccceec-cCCCcchhheecCCcccchhhhhccCccceeEccCchhccccC
Confidence 99999999999986322110 0000000 000000 0111111111111222222222222111 2345
Q ss_pred ceEEEEEee-CCC-cEEEEEecCCeEEEEeCCCCCC--------CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEE
Q 011709 280 TVEDVTFCP-SSA-QEFCSVGDDSCLILWDARVGTS--------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR 349 (479)
Q Consensus 280 ~v~~l~~~~-~~~-~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~ 349 (479)
.+.+..+.. ++. -++++|-++|.|.+||+.++.. +.......|..+|.++.|.+ .-..=++|+.+..+.
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLV 230 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccce
Confidence 677766533 222 3566788999999999998731 23344457999999999988 555557788888999
Q ss_pred EEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC
Q 011709 350 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 429 (479)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh 429 (479)
.|.+...... .+.-.++.-....|..+...||++ +|||+|.|+.||||..++. .|-.+ ..=|
T Consensus 231 ~~Sl~~s~gs--lq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl------------~pLAV---LkyH 292 (323)
T KOG0322|consen 231 MYSLNHSTGS--LQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL------------NPLAV---LKYH 292 (323)
T ss_pred eeeeccccCc--ccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC------------Cchhh---hhhh
Confidence 9998864311 111122223345688999999998 8999999999999999985 23233 3334
Q ss_pred CC-ceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 430 SP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 430 ~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
.. +.+++|+|+...+++++. |+.|-+|..
T Consensus 293 sagvn~vAfspd~~lmAaask-----D~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASK-----DARISLWKL 322 (323)
T ss_pred hcceeEEEeCCCCchhhhccC-----CceEEeeec
Confidence 44 999999999999999999 999999974
No 169
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=9.9e-18 Score=157.96 Aligned_cols=247 Identities=15% Similarity=0.201 Sum_probs=187.3
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
+-.+.|-.++|.+ +..|.+.+.+|.|.-||+.+. ++...+.... ++|++++.+|.+..++.|+.|
T Consensus 67 ~~drsIE~L~W~e--~~RLFS~g~sg~i~EwDl~~l------------k~~~~~d~~g-g~IWsiai~p~~~~l~Igcdd 131 (691)
T KOG2048|consen 67 PEDRSIESLAWAE--GGRLFSSGLSGSITEWDLHTL------------KQKYNIDSNG-GAIWSIAINPENTILAIGCDD 131 (691)
T ss_pred CCCCceeeEEEcc--CCeEEeecCCceEEEEecccC------------ceeEEecCCC-cceeEEEeCCccceEEeecCC
Confidence 4456899999995 447888889999999999988 4444444444 479999999999999999999
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
|.+..+++..+.... ...+...++.|.+++|+|++ ..+++|
T Consensus 132 Gvl~~~s~~p~~I~~--------------------------------------~r~l~rq~sRvLslsw~~~~-~~i~~G 172 (691)
T KOG2048|consen 132 GVLYDFSIGPDKITY--------------------------------------KRSLMRQKSRVLSLSWNPTG-TKIAGG 172 (691)
T ss_pred ceEEEEecCCceEEE--------------------------------------EeecccccceEEEEEecCCc-cEEEec
Confidence 977777775433211 13344457899999999999 679999
Q ss_pred ecCCeEEEEeCCCCCCCceee-----ec-cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 298 GDDSCLILWDARVGTSPVIKV-----EK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~-----~~-~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
+.||.|++||...+....+.. +. ....-|+++.|-. ...|++|.+.|+|.+||... +..++.+..|
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~------gTLiqS~~~h 244 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIF------GTLIQSHSCH 244 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccC------cchhhhhhhh
Confidence 999999999999887322111 11 2344578888874 57899999999999999998 8899999999
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~ 450 (479)
..-|.+++..+++.++ .++|.|+.|.-+.....+.+- ...-...+|.. +.+++..++ .+++||.
T Consensus 245 ~adVl~Lav~~~~d~v-fsaGvd~~ii~~~~~~~~~~w-----------v~~~~r~~h~hdvrs~av~~~--~l~sgG~- 309 (691)
T KOG2048|consen 245 DADVLALAVADNEDRV-FSAGVDPKIIQYSLTTNKSEW-----------VINSRRDLHAHDVRSMAVIEN--ALISGGR- 309 (691)
T ss_pred hcceeEEEEcCCCCeE-EEccCCCceEEEEecCCccce-----------eeeccccCCcccceeeeeecc--eEEecce-
Confidence 9999999999998864 599999999999887753321 11112344544 788888876 8888888
Q ss_pred ccccceeEEEEeecc
Q 011709 451 LSYANKKIKIYCHLE 465 (479)
Q Consensus 451 ~~~~d~~i~i~~~~~ 465 (479)
|..+.+-...+
T Consensus 310 ----d~~l~i~~s~~ 320 (691)
T KOG2048|consen 310 ----DFTLAICSSRE 320 (691)
T ss_pred ----eeEEEEccccc
Confidence 77776654433
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=4.5e-19 Score=153.21 Aligned_cols=263 Identities=17% Similarity=0.248 Sum_probs=188.2
Q ss_pred ecCCCceeEEEecC----CCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEe--ccCCCceeeeeecCC---
Q 011709 137 IIHPGEVNRIRELP----QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPT--- 207 (479)
Q Consensus 137 ~~h~~~V~~l~~~p----~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~l~~s~~--- 207 (479)
..|..+|..++|.+ +....+||.+.+ .+.||......- ......+. .|.. .-+.++|+-+
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~---------ir~lq~y~D~d~~E-sfytcsw~yd~~~ 103 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGG---------IRLLQSYADEDHDE-SFYTCSWSYDSNT 103 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccc---------eeeeeeccCCCCCc-ceEEEEEEecCCC
Confidence 46788999999985 356678887766 788888876521 11122221 2333 4678888754
Q ss_pred -CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 208 -EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 208 -~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
..+||.|+.-|.|+|.|+.+.+.. ..+.+|...|+.+.+
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~----------------------------------------~~~~ghG~sINeik~ 143 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCS----------------------------------------KNYRGHGGSINEIKF 143 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhc----------------------------------------cceeccCccchhhhc
Confidence 348999999999999999765432 567889999999999
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCCCCceeee---ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCC------
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT------ 357 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~------ 357 (479)
+|..+++++++|.|.+|++|++++.. ++..+ .+|...|.++.|++ ++.+|++++.|.+|++|++...+
T Consensus 144 ~p~~~qlvls~SkD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE 220 (385)
T KOG1034|consen 144 HPDRPQLVLSASKDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLE 220 (385)
T ss_pred CCCCCcEEEEecCCceEEEEeccCCe--EEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhh
Confidence 99999999999999999999999988 55544 47999999999999 99999999999999999998321
Q ss_pred ------CCCCCC---------cee-eecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCe
Q 011709 358 ------SNGVGS---------PIN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG 421 (479)
Q Consensus 358 ------~~~~~~---------~~~-~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 421 (479)
+++... |.. +-.-|...|-|+.|-- .+ ++|=|-++.|..|.....++... .-.|++
T Consensus 221 ~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~-ilSkscenaI~~w~pgkl~e~~~-----~vkp~e 292 (385)
T KOG1034|consen 221 LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DF-ILSKSCENAIVCWKPGKLEESIH-----NVKPPE 292 (385)
T ss_pred hhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hh-eeecccCceEEEEecchhhhhhh-----ccCCCc
Confidence 011110 111 2345778888888864 54 55888899999998743222211 112333
Q ss_pred eEEEeCCCCC-----c--eeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 422 LFFQHAGHSP-----S--SSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 422 l~~~~~gh~~-----~--~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
.....-++.. + ...+|.|.+++|+.|+. .|+|.+|+....
T Consensus 293 s~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq-----~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 293 SATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ-----SGKVYVWDLDNN 339 (385)
T ss_pred cceeeeeEeccCccceEEEEEeecHHHHHHhhccC-----CCcEEEEECCCC
Confidence 3333333333 2 44666788999999999 899999976543
No 171
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=148.69 Aligned_cols=202 Identities=11% Similarity=0.167 Sum_probs=150.3
Q ss_pred eeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCC
Q 011709 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (479)
..|+.|++.|.+||+|..||.|.+||+.+.. +-+.+.+|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----------------------------------------iar~lsaH~ 65 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR----------------------------------------IARMLSAHV 65 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc----------------------------------------hhhhhhccc
Confidence 3699999999999999999999999996522 226788899
Q ss_pred CceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCe--------------------------------
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL-------------------------------- 326 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-------------------------------- 326 (479)
.+|.+++|+++| +.|+|+|.|..|.+||+..+.. ++.+. -.++|
T Consensus 66 ~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~--l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h 141 (405)
T KOG1273|consen 66 RPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSP--LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH 141 (405)
T ss_pred cceeEEEecCCC-CEeeeecCCceeEEEeccCCCc--eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce
Confidence 999999999999 7899999999999999998872 22110 11111
Q ss_pred ---------------EEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC-CcEEEEEEecCCCcEEEE
Q 011709 327 ---------------HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-AAVLCVQWSPDKSSVFGS 390 (479)
Q Consensus 327 ---------------~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~llas 390 (479)
.+..|.+ .|+||++|...|.+.++|..+ .+++..++-.. ..|.++.|+..|+. |+.
T Consensus 142 ~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t------~e~vas~rits~~~IK~I~~s~~g~~-lii 213 (405)
T KOG1273|consen 142 SVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAET------LECVASFRITSVQAIKQIIVSRKGRF-LII 213 (405)
T ss_pred eeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecch------heeeeeeeechheeeeEEEEeccCcE-EEE
Confidence 1223555 689999999999999999998 57787777655 78999999999996 568
Q ss_pred EeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeC---CCCCceeEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 391 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA---GHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 391 ~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~---gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
-+.|+.||.|+++..-.+-.. +-++...... -...-.+++|+-+|.++++++.. ...++||.
T Consensus 214 NtsDRvIR~ye~~di~~~~r~------~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~----aHaLYIWE 278 (405)
T KOG1273|consen 214 NTSDRVIRTYEISDIDDEGRD------GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSAR----AHALYIWE 278 (405)
T ss_pred ecCCceEEEEehhhhcccCcc------CCcChhHHHHHHHhhhhhhheeecCCccEEEecccc----ceeEEEEe
Confidence 888999999998853111000 0011000000 01113688999999999999876 78889994
No 172
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=160.40 Aligned_cols=231 Identities=22% Similarity=0.360 Sum_probs=169.0
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCcEE
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVL 212 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~l~ 212 (479)
.+.+|+|.|+|+.|+. +|.+||+||+|-.+.|||.-..+ .....-.||+.+ |+++.|-|. .+.++
T Consensus 45 eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~K-----------llhsI~TgHtaN-IFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYK-----------LLHSISTGHTAN-IFSVKFVPYTNNRIVL 111 (758)
T ss_pred hhccccceecceeecC-CCCEEeecCCcceEEeecchhcc-----------eeeeeecccccc-eeEEeeeccCCCeEEE
Confidence 4569999999999999 99999999999999999998652 223345799986 899999995 55899
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+|+.|..|+++|+........ |.....+...+..|...|..++-.|.+++
T Consensus 112 sgAgDk~i~lfdl~~~~~~~~------------------------------d~~~~~~~~~~~cht~rVKria~~p~~Ph 161 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGGM------------------------------DHGMEETTRCWSCHTDRVKRIATAPNGPH 161 (758)
T ss_pred eccCcceEEEEeccccccccc------------------------------ccCccchhhhhhhhhhhhhheecCCCCCc
Confidence 999999999999975322110 11112233556679999999999999999
Q ss_pred EEEEEecCCeEEEEeCCCCCC--Cce------eeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCC----C
Q 011709 293 EFCSVGDDSCLILWDARVGTS--PVI------KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN----G 360 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~--~~~------~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~----~ 360 (479)
.|.++++||+|+.+|+|.... +.. ..+...--...|+..+|.+..+|+.|+.|-..++||.|...+. .
T Consensus 162 tfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~ 241 (758)
T KOG1310|consen 162 TFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDG 241 (758)
T ss_pred eEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCc
Confidence 999999999999999998541 100 0011112346789999988999999999999999996542211 0
Q ss_pred C--------CCceeee-cCCC-----------CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccc
Q 011709 361 V--------GSPINKF-EGHS-----------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 409 (479)
Q Consensus 361 ~--------~~~~~~~-~~h~-----------~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~ 409 (479)
. ..++..+ .+|- ..++-+.|+|+|.-+|++-+.+ .|+++|+.......
T Consensus 242 ~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 242 TMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDKSPT 309 (758)
T ss_pred cccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCCCCce
Confidence 0 0122222 1222 1256789999999888777755 69999999854443
No 173
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=3.2e-18 Score=159.86 Aligned_cols=247 Identities=16% Similarity=0.242 Sum_probs=175.9
Q ss_pred CcEEEE--EeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC-CCCcEEEecCCCcEEEEecCCCc
Q 011709 153 TKIVAT--HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHI 229 (479)
Q Consensus 153 ~~~lat--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-~~~~l~s~s~dg~i~vwd~~~~~ 229 (479)
...+|. .+..|.|.||++........ ..+-.+. .+..|+.+.|.| |...|+.++.||.|++|.+..+.
T Consensus 591 ~~rvAVPL~g~gG~iai~el~~PGrLPD-------gv~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 591 NKRVAVPLAGSGGVIAIYELNEPGRLPD-------GVMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred cceEEEEecCCCceEEEEEcCCCCCCCc-------ccccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCC
Confidence 334443 45578999999998643321 1111222 223589999999 46689999999999999997543
Q ss_pred cccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCC
Q 011709 230 TSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 309 (479)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 309 (479)
... ....+-..+..|...|+++.|||-...+|++++.|.+|++||++
T Consensus 662 l~e---------------------------------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 662 LPE---------------------------------NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred CCc---------------------------------ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 321 22334477889999999999999877899999999999999999
Q ss_pred CCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC-cEEEEEEecCCCcEE
Q 011709 310 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA-AVLCVQWSPDKSSVF 388 (479)
Q Consensus 310 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~p~~~~ll 388 (479)
+.. ....+.+|...|..++|+| +|+.+|+.+.||+|++|..|+.. +++.+-.+..+ .--.|.|.-+|++++
T Consensus 709 ~~~--~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e-----~pv~Eg~gpvgtRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 709 NAK--LYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSRE-----QPVYEGKGPVGTRGARILWACDGRIVI 780 (1012)
T ss_pred hhh--hhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCC-----CccccCCCCccCcceeEEEEecCcEEE
Confidence 988 5667789999999999999 99999999999999999999842 45555444322 234678888999766
Q ss_pred EEEeC---CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 389 GSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 389 as~s~---Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
++|-. .+.|.+||.++... .+-......-...+.--.+.+|...|+.+|.| |..|.+|.+.
T Consensus 781 v~Gfdk~SeRQv~~Y~Aq~l~~-----------~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKG----D~~v~~yEv~ 844 (1012)
T KOG1445|consen 781 VVGFDKSSERQVQMYDAQTLDL-----------RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKG----DRFVNMYEVI 844 (1012)
T ss_pred EecccccchhhhhhhhhhhccC-----------CcceeeeecccCccccccccCCCceEEEecCC----CceEEEEEec
Confidence 55532 36788888776320 00111111111122333466788888888887 8999988654
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.5e-18 Score=160.17 Aligned_cols=251 Identities=18% Similarity=0.202 Sum_probs=170.8
Q ss_pred CCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCC
Q 011709 94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 173 (479)
Q Consensus 94 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~ 173 (479)
++++++.|.+|+++-..+ ........+....+|.++|.|+.+.+ ++..+.+|+-||+|+.|++...
T Consensus 311 t~sed~~lk~WnLqk~~~-------------s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n 376 (577)
T KOG0642|consen 311 TASEDGTLKLWNLQKAKK-------------SAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPN 376 (577)
T ss_pred EeccccchhhhhhcccCC-------------ccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCC
Confidence 345788888887742110 00111234788899999999999888 9999999999999999988732
Q ss_pred CCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCC-----ce
Q 011709 174 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSG-----SI 248 (479)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~ 248 (479)
...............+.||++ .|+.+++++...+|++|+.||++++|+...... ..+..........+. ..
T Consensus 377 --~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~ 452 (577)
T KOG0642|consen 377 --QDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRP 452 (577)
T ss_pred --CCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchh
Confidence 222222223345567899998 589999999999999999999999999876544 111110000000000 00
Q ss_pred eecCCCCCCCCCCCCCCCCCCCceeecC-------CCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeecc
Q 011709 249 IKQSPKPGDGNDKAADGPSVGPRGIYNG-------HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 321 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 321 (479)
.........+...+.+......+..+.. ....++-+.++|.+ .+.+++.+|+.|+++|..++. ++.....
T Consensus 453 a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~--~l~s~~a 529 (577)
T KOG0642|consen 453 AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGK--ILHSMVA 529 (577)
T ss_pred HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceecccccccc--cchheee
Confidence 0000111111222222233322222221 12357888999998 689999999999999999999 7777889
Q ss_pred CCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 322 ~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
|...++++++.| ++.+|++|+.||.+++|.+.. ..++.....|.
T Consensus 530 ~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~------k~~~~es~~~r 573 (577)
T KOG0642|consen 530 HKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDV------KTCVLESTAHR 573 (577)
T ss_pred ccceecceeecC-CCceEEeecCCceeehhhccc------hheeecccccc
Confidence 999999999999 999999999999999999976 45666655554
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.3e-17 Score=136.07 Aligned_cols=243 Identities=17% Similarity=0.235 Sum_probs=165.1
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEE
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~ 221 (479)
.|.+-+++| .+++|++|+.+|+|.+..+......... .....++....+|.+ +++.++|. ..+|++|+ ||.|+
T Consensus 12 tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~--~~gk~~iv~eqahdg-piy~~~f~--d~~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 12 TVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAE--PPGKLKIVPEQAHDG-PIYYLAFH--DDFLLSGG-DGLVY 84 (325)
T ss_pred HHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccC--CCCCcceeeccccCC-Ceeeeeee--hhheeecc-CceEE
Confidence 466677889 8889999999999999998865333221 112244555688987 69999998 45788887 69999
Q ss_pred EEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC
Q 011709 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (479)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (479)
-|.-+......... .+|.... |.++-...-..|+++...|... -++.++.|+
T Consensus 85 gw~W~E~~es~~~K-------------------------~lwe~~~--P~~~~~~evPeINam~ldP~en-Si~~AgGD~ 136 (325)
T KOG0649|consen 85 GWEWNEEEESLATK-------------------------RLWEVKI--PMQVDAVEVPEINAMWLDPSEN-SILFAGGDG 136 (325)
T ss_pred Eeeehhhhhhccch-------------------------hhhhhcC--ccccCcccCCccceeEeccCCC-cEEEecCCe
Confidence 99876543321110 1111111 1111111234689999999874 455666999
Q ss_pred eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC---------C-
Q 011709 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---------H- 371 (479)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~---------h- 371 (479)
.++.||+.+++ ..+.+.+|...|.++.--. ....+++|+.||++||||+++ ++.+..+.. |
T Consensus 137 ~~y~~dlE~G~--i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt------~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 137 VIYQVDLEDGR--IQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKT------QKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred EEEEEEecCCE--EEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccc------cceeEEeccccChhhcCccc
Confidence 99999999999 7889999999999999855 567899999999999999998 566655532 2
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
...|-+++-+.+ + |++| ....+.+|.++.. .+..+|...+| +..+.|-. .+++++|.
T Consensus 208 g~wigala~~ed--W-lvCG-gGp~lslwhLrss-------------e~t~vfpipa~--v~~v~F~~--d~vl~~G~ 264 (325)
T KOG0649|consen 208 GKWIGALAVNED--W-LVCG-GGPKLSLWHLRSS-------------ESTCVFPIPAR--VHLVDFVD--DCVLIGGE 264 (325)
T ss_pred CceeEEEeccCc--e-EEec-CCCceeEEeccCC-------------CceEEEecccc--eeEeeeec--ceEEEecc
Confidence 235677776544 3 4344 4668999999983 22335555444 34555533 45666665
No 176
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2.9e-17 Score=161.84 Aligned_cols=264 Identities=14% Similarity=0.195 Sum_probs=177.5
Q ss_pred CCceeEEEecC-CCCcEEEEEeCCCcEEEEECCCCC-CccccCCCCCCCCcE-EEeccCCCceeeeeecCCCCcEEEecC
Q 011709 140 PGEVNRIRELP-QNTKIVATHTDSPDVLIWDVEAQP-NRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 140 ~~~V~~l~~~p-~~~~~lat~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~-~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
...|+.+.+.. ++..++.+|+.||.|+||+-.... ........ ...+. .+.+-.+ .-.-++|.....+|+++|.
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTa--w~~Ls~~~~~~r~-~~~v~dWqQ~~G~Ll~tGd 1185 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTA--WSSLSDQLPGARG-TGLVVDWQQQSGHLLVTGD 1185 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEe--eccccccCccCCC-CCeeeehhhhCCeEEecCC
Confidence 34677777655 567799999999999999754431 11110000 00000 0111122 2245789888788888887
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
-..|+|||.......... ..+....|+++.-+-.+.+++++
T Consensus 1186 ~r~IRIWDa~~E~~~~di---------------------------------------P~~s~t~vTaLS~~~~~gn~i~A 1226 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADI---------------------------------------PYGSSTLVTALSADLVHGNIIAA 1226 (1387)
T ss_pred eeEEEEEecccceeEeec---------------------------------------ccCCCccceeecccccCCceEEE
Confidence 899999999865432211 11234456666655444579999
Q ss_pred EecCCeEEEEeCCCCCC-CceeeeccCCCC--eEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC-
Q 011709 297 VGDDSCLILWDARVGTS-PVIKVEKAHDAD--LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS- 372 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~--v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~- 372 (479)
|..||.|++||.|.... ..+.....|+.. |..+.+.+..-.-|++|+.||.|++||+|.... ....++..|-
T Consensus 1227 GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~----e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK----ETFLTIVAHWE 1302 (1387)
T ss_pred eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc----cccceeeeccc
Confidence 99999999999998652 245666778877 999999983334599999999999999998421 2222333333
Q ss_pred -C-cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCC
Q 011709 373 -A-AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 373 -~-~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~ 450 (479)
+ ..+++..|++.+ ++|+|+. +.|+||++.. +.+...... -.|.-.-...+++++|+|-.-.+++|..
T Consensus 1303 yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G--~~l~~~k~n------~~F~~q~~gs~scL~FHP~~~llAaG~~- 1371 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAP-IIASGSA-QLIKIYSLSG--EQLNIIKYN------PGFMGQRIGSVSCLAFHPHRLLLAAGSA- 1371 (1387)
T ss_pred cCccceeeeeccCCC-eeeecCc-ceEEEEecCh--hhhcccccC------cccccCcCCCcceeeecchhHhhhhccC-
Confidence 3 599999999998 7899998 9999999975 222221111 1232232334799999999999999977
Q ss_pred ccccceeEEEEeec
Q 011709 451 LSYANKKIKIYCHL 464 (479)
Q Consensus 451 ~~~~d~~i~i~~~~ 464 (479)
|..|.||...
T Consensus 1372 ----Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1372 ----DSTVSIYSCE 1381 (1387)
T ss_pred ----CceEEEeecC
Confidence 9999999654
No 177
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1e-17 Score=151.03 Aligned_cols=204 Identities=15% Similarity=0.278 Sum_probs=166.7
Q ss_pred CceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC
Q 011709 197 NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 276 (479)
Q Consensus 197 ~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (479)
+.|+++.|+|....|++|+.||++++|.+...... .++.+.-
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--------------------------------------~lqS~~l 255 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--------------------------------------KLQSIHL 255 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccCh--------------------------------------hheeeee
Confidence 35899999999999999999999999999753321 2233333
Q ss_pred CCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCC-CCeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
...+|.+..|+|+|...+++++.-..+..||+.+.+...+....++. ..+.....+| ++++|+..+..|.|+|....+
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT 334 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKT 334 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhh
Confidence 46789999999999768999999999999999988744444444554 4577888999 999999999999999999888
Q ss_pred CCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeE
Q 011709 356 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSI 435 (479)
Q Consensus 356 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~ 435 (479)
+..+.+++ -.+.|..++|+.++..|+ .++.+|.|.+||++.. ...-.|+..|-..-+++
T Consensus 335 ------~eli~s~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~-------------~~~~rf~D~G~v~gts~ 393 (514)
T KOG2055|consen 335 ------KELITSFK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQN-------------SCLHRFVDDGSVHGTSL 393 (514)
T ss_pred ------hhhhheee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCc-------------ceEEEEeecCccceeee
Confidence 67888777 467899999999998766 5555899999999983 22446777777778999
Q ss_pred EEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 436 KFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 436 ~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
+.++++.+||+|++ .|-|.||+...
T Consensus 394 ~~S~ng~ylA~GS~-----~GiVNIYd~~s 418 (514)
T KOG2055|consen 394 CISLNGSYLATGSD-----SGIVNIYDGNS 418 (514)
T ss_pred eecCCCceEEeccC-----cceEEEeccch
Confidence 99999999999999 99999997443
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=1.7e-17 Score=155.92 Aligned_cols=270 Identities=13% Similarity=0.168 Sum_probs=181.3
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEE
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~ 221 (479)
.|+.++|-| +|..|+.+..+ .+.|||...+ ....++++|.+ .|+|++|+.+|++++||+.|+.|.
T Consensus 14 ci~d~afkP-DGsqL~lAAg~-rlliyD~ndG------------~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI 78 (1081)
T KOG1538|consen 14 CINDIAFKP-DGTQLILAAGS-RLLVYDTSDG------------TLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVI 78 (1081)
T ss_pred chheeEECC-CCceEEEecCC-EEEEEeCCCc------------ccccccccccc-eEEEEEEccCCceeccCCCceeEE
Confidence 799999999 44444444433 7999999988 67788999998 599999999999999999999999
Q ss_pred EEecCCCccccccCCcccccCCCCCceeecCCCC------CCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP------GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
+|.-.-.....- +......+....+-. .-...-+|...... +...+ ....|.+++|..+| ++|+
T Consensus 79 ~W~~klEG~LkY-------SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~-V~K~k-ss~R~~~CsWtnDG-qyla 148 (1081)
T KOG1538|consen 79 IWTSKLEGILKY-------SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS-VSKHK-SSSRIICCSWTNDG-QYLA 148 (1081)
T ss_pred Eecccccceeee-------ccCCeeeEeecCchHHHhhhcchhhccccChhhhh-HHhhh-hheeEEEeeecCCC-cEEE
Confidence 998653211100 001111111111100 00111122221111 11111 24578999999999 7999
Q ss_pred EEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCC----cEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD----NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~----~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
.|-.||+|.+-+-.......+....+.+.+|.+++|+|..+ ..++......++..|.+. |+.+..-+.-
T Consensus 149 lG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-------G~~Igk~r~L 221 (1081)
T KOG1538|consen 149 LGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-------GKQIGKDRAL 221 (1081)
T ss_pred EeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-------ceeecccccC
Confidence 99999999998654433223333446789999999999533 467777777788887776 3555433333
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC--ceeEEEecCCCeeeecCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP--SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~--~~~~~~sp~~~~l~~~~~ 449 (479)
.-...|+.+.++|+++| .||.|+.+.+|.-.. -++ ..-|..+ +.+++..|+++.++.|..
T Consensus 222 ~FdP~CisYf~NGEy~L-iGGsdk~L~~fTR~G----------------vrL-GTvg~~D~WIWtV~~~PNsQ~v~~GCq 283 (1081)
T KOG1538|consen 222 NFDPCCISYFTNGEYIL-LGGSDKQLSLFTRDG----------------VRL-GTVGEQDSWIWTVQAKPNSQYVVVGCQ 283 (1081)
T ss_pred CCCchhheeccCCcEEE-EccCCCceEEEeecC----------------eEE-eeccccceeEEEEEEccCCceEEEEEc
Confidence 34456899999999866 777899999997443 111 1222233 789999999999999999
Q ss_pred CccccceeEEEEeeccc
Q 011709 450 GLSYANKKIKIYCHLEA 466 (479)
Q Consensus 450 ~~~~~d~~i~i~~~~~~ 466 (479)
||+|-.|+....
T Consensus 284 -----DGTiACyNl~fS 295 (1081)
T KOG1538|consen 284 -----DGTIACYNLIFS 295 (1081)
T ss_pred -----cCeeehhhhHHh
Confidence 999999976543
No 179
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=1.7e-17 Score=143.21 Aligned_cols=215 Identities=14% Similarity=0.208 Sum_probs=172.9
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCc
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~ 219 (479)
..+|+|.+|++ +...+|.+.....|.||...... ..+..+++..|.. .|++++|+|..+.|++|+.|..
T Consensus 10 ~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~---------~w~~~htls~Hd~-~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 10 LEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGAD---------LWEPAHTLSEHDK-IVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred cCceeeeeecC-CCceEEeccCCceEEEEEecCCC---------CceeceehhhhCc-ceeEEeecCCCCceeEccCCCC
Confidence 46899999999 88899999999999999988762 2467788999987 5899999999999999999999
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
-.||....+ .+..+...+..++...+++.|+|.+ +.|++|+.
T Consensus 79 ayVw~~~~~-------------------------------------~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSg 120 (361)
T KOG1523|consen 79 AYVWTQPSG-------------------------------------GTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSG 120 (361)
T ss_pred ccccccCCC-------------------------------------CeeccceeEEEeccceeeEeecCcC-ceEEeccC
Confidence 999987421 3334446667788999999999998 78999999
Q ss_pred CCeEEEEeCCCCC--CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCC--------C----CCCCCce
Q 011709 300 DSCLILWDARVGT--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT--------S----NGVGSPI 365 (479)
Q Consensus 300 dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~--------~----~~~~~~~ 365 (479)
...|.+|-+.... ....+..+.+.+.|++++|+| ++-+|++|+.|+..|||..--.. . -..+..+
T Consensus 121 ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm 199 (361)
T KOG1523|consen 121 ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLM 199 (361)
T ss_pred ccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHH
Confidence 9999999887654 112233456788999999999 99999999999999998642100 0 0113445
Q ss_pred eeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 366 ~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
.++....+.|..+.|+|+|.. |+-.+.|..+.+=|...+
T Consensus 200 ~E~~~~ggwvh~v~fs~sG~~-lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 200 SEASSSGGWVHGVLFSPSGNR-LAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred HhhccCCCceeeeEeCCCCCE-eeEecCCCceEEeecCCC
Confidence 556566789999999999995 789999999999998774
No 180
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=5.8e-18 Score=158.14 Aligned_cols=215 Identities=19% Similarity=0.318 Sum_probs=165.6
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC-CCcEEEecC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGK 216 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~-~~~l~s~s~ 216 (479)
-....|+.+.|.|.+...||.+++||.|+||.+..+... .....+...+.+|.. .|+++.|+|- ...|++++.
T Consensus 625 ~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~-----e~~~tPe~~lt~h~e-KI~slRfHPLAadvLa~asy 698 (1012)
T KOG1445|consen 625 FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP-----ENEMTPEKILTIHGE-KITSLRFHPLAADVLAVASY 698 (1012)
T ss_pred ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC-----cccCCcceeeecccc-eEEEEEecchhhhHhhhhhc
Confidence 345679999999999999999999999999999876322 123467788999997 5999999996 568999999
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
|-+|++||+.+... ...+.+|++.|.+++|+|+| +.+++
T Consensus 699 d~Ti~lWDl~~~~~----------------------------------------~~~l~gHtdqIf~~AWSpdG-r~~At 737 (1012)
T KOG1445|consen 699 DSTIELWDLANAKL----------------------------------------YSRLVGHTDQIFGIAWSPDG-RRIAT 737 (1012)
T ss_pred cceeeeeehhhhhh----------------------------------------hheeccCcCceeEEEECCCC-cceee
Confidence 99999999976433 25678899999999999999 78999
Q ss_pred EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC----cEEEEecCCCCCCCCCCceeeecCCC
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----SVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg----~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
.+.||+|++|.-+.+..++......-...--.|.|.- +++++++.+.|. .|.+||....+ +.++.+..-..
T Consensus 738 VcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~----~~pl~t~~lDv 812 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLD----LRPLYTQVLDV 812 (1012)
T ss_pred eecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhcc----CCcceeeeecc
Confidence 9999999999999988653322211223334577776 888888887775 68999988765 45655543221
Q ss_pred C-cEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 373 A-AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 373 ~-~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
. .+.--.+.+|...+|++|-.|..|.+|.+--
T Consensus 813 aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 813 APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred cCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 1 1222346678888899999999999999875
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=1.1e-15 Score=144.46 Aligned_cols=263 Identities=10% Similarity=0.141 Sum_probs=167.4
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEE-eCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATH-TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
..+.+.+.+....+.++| ++++|+++ ..++.|.+|++...... ....... ..+ ....++|+|++++|
T Consensus 27 ~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l---------~~~~~~~-~~~-~p~~i~~~~~g~~l 94 (330)
T PRK11028 27 LLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGAL---------TFAAESP-LPG-SPTHISTDHQGRFL 94 (330)
T ss_pred eeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCce---------EEeeeec-CCC-CceEEEECCCCCEE
Confidence 445566667788899999 66666554 56889999999732100 1111111 112 24689999999988
Q ss_pred EEec-CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 212 LSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 212 ~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
++++ .++.|.+|++++..... ..+..+. +......++++|++
T Consensus 95 ~v~~~~~~~v~v~~~~~~g~~~------------------------------------~~~~~~~-~~~~~~~~~~~p~g 137 (330)
T PRK11028 95 FSASYNANCVSVSPLDKDGIPV------------------------------------APIQIIE-GLEGCHSANIDPDN 137 (330)
T ss_pred EEEEcCCCeEEEEEECCCCCCC------------------------------------Cceeecc-CCCcccEeEeCCCC
Confidence 8776 48999999996321100 0001111 12345678899999
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCce----e-eeccCCCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCCCCCCCCCCc
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVI----K-VEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSP 364 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~----~-~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~ 364 (479)
..++++...++.|.+||+.+... +. . ...........++|+| +++++++++. ++.|.+||++.... ..+.
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~~g~-l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~--~~~~ 213 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSDDGH-LVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHG--EIEC 213 (330)
T ss_pred CEEEEeeCCCCEEEEEEECCCCc-ccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCC--CEEE
Confidence 66667777889999999986331 11 0 0011234467899999 8999888876 89999999974210 0122
Q ss_pred eeeecCC------CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeE-EEeCCCCCceeEEE
Q 011709 365 INKFEGH------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF-FQHAGHSPSSSIKF 437 (479)
Q Consensus 365 ~~~~~~h------~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~-~~~~gh~~~~~~~~ 437 (479)
+..+..+ ......+.|+|++++++++...++.|.+|++...+... .+. ....| .....++|
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-----------~~~~~~~~~-~~p~~~~~ 281 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-----------SFEGHQPTE-TQPRGFNI 281 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-----------EEeEEEecc-ccCCceEE
Confidence 3333221 12334689999999877665668999999997632111 111 11122 23568899
Q ss_pred ecCCCeeeecCCCccccceeEEEEeec
Q 011709 438 VLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 438 sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
+|+|++|++++.+ ++.|.+|...
T Consensus 282 ~~dg~~l~va~~~----~~~v~v~~~~ 304 (330)
T PRK11028 282 DHSGKYLIAAGQK----SHHISVYEID 304 (330)
T ss_pred CCCCCEEEEEEcc----CCcEEEEEEc
Confidence 9999999988776 8999999753
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=9.3e-18 Score=149.10 Aligned_cols=216 Identities=22% Similarity=0.338 Sum_probs=162.4
Q ss_pred ccCCCceeeeeecCCCC-cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCc
Q 011709 193 GHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR 271 (479)
Q Consensus 193 ~h~~~~v~~l~~s~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (479)
-|...+|+.+.|.++.. .|+||+.|..|++|.++........ ......
T Consensus 10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-------------------------------~~V~y~ 58 (434)
T KOG1009|consen 10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-------------------------------MKVEYL 58 (434)
T ss_pred ecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-------------------------------eeEEEe
Confidence 34444689999999866 9999999999999998754321100 122234
Q ss_pred eeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCC--------C------CCCCceeeeccCCCCeEEEEecCCCCc
Q 011709 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR--------V------GTSPVIKVEKAHDADLHCVDWNPLDDN 337 (479)
Q Consensus 272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--------~------~~~~~~~~~~~~~~~v~~l~~sp~~~~ 337 (479)
..+..|...|+.+.|+|+| .++++|+++|.|.+|-.. + ..+...+.+.+|...|..++|+| +++
T Consensus 59 s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~ 136 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSN 136 (434)
T ss_pred ecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCc
Confidence 6678899999999999999 699999999999999766 2 11334566678999999999999 999
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccc--------
Q 011709 338 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV-------- 409 (479)
Q Consensus 338 ~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~-------- 409 (479)
++++|+.|..+++||++. +..+..+..|..-|..++|.|.+++ +++-+.|...+++.+...+...
T Consensus 137 ~l~s~s~dns~~l~Dv~~------G~l~~~~~dh~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~ 209 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHA------GQLLAILDDHEHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLKQVIKRHGLDIMP 209 (434)
T ss_pred eeeeeeccceEEEEEecc------ceeEeeccccccccceeecchhhhh-hhhhccCcccceeeeeeeeeeeeeeeeEee
Confidence 999999999999999999 8899999999999999999999997 5788889877777766532111
Q ss_pred cCCCCCCCCCCeeEEEeCCCCC--ceeEEEecCCCeeeecCC
Q 011709 410 EQGPRTTNYPAGLFFQHAGHSP--SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 410 ~~~~~~~~~~~~l~~~~~gh~~--~~~~~~sp~~~~l~~~~~ 449 (479)
.....+..+..-.+| |..... -..++|+|+|..|++...
T Consensus 210 ~~~~~~~e~~s~rLf-hDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 210 AKAFNEREGKSTRLF-HDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred ecccCCCCcceeeee-ecCchhhhhhhcccCCCCcEEEcccc
Confidence 011111111212222 222211 578999999999988765
No 183
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2e-17 Score=150.26 Aligned_cols=271 Identities=21% Similarity=0.324 Sum_probs=196.8
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEE-eccCCCceeeeeecCC--CCc
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TGHQDNAEFALAMCPT--EPY 210 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~v~~l~~s~~--~~~ 210 (479)
.++-.|.|.|+.|.|+. .+..|++|+.|..|.+||+... .+...+ .||..+ |....|-|. .+.
T Consensus 136 ~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~------------~~~l~f~SGH~~N-vfQaKFiP~s~d~t 201 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSG------------SPKLSFESGHCNN-VFQAKFIPFSGDRT 201 (559)
T ss_pred hcccCCCCccceeeecc-cCceeeccCccceEEeehhhcc------------Ccccccccccccc-hhhhhccCCCCCcC
Confidence 34568999999999998 8999999999999999999987 333333 467765 778889886 358
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
+++++.||.+++=.+...... .....+..|.+.|..++.-|+.
T Consensus 202 i~~~s~dgqvr~s~i~~t~~~-------------------------------------e~t~rl~~h~g~vhklav~p~s 244 (559)
T KOG1334|consen 202 IVTSSRDGQVRVSEILETGYV-------------------------------------ENTKRLAPHEGPVHKLAVEPDS 244 (559)
T ss_pred ceeccccCceeeeeeccccce-------------------------------------ecceecccccCccceeeecCCC
Confidence 999999999998766421110 1113455699999999999999
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCce-eeeccCCC---CeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVI-KVEKAHDA---DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~---~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
+..|.++++|+.+.-+|+++...... .....+.. ..++++.+|.+.+++++|+.|-.+++||.|.........++.
T Consensus 245 p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~ 324 (559)
T KOG1334|consen 245 PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLD 324 (559)
T ss_pred CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhh
Confidence 99999999999999999998763211 12223444 678999999888899999999999999999876543333444
Q ss_pred eecCC------CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC---ceeEEE
Q 011709 367 KFEGH------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP---SSSIKF 437 (479)
Q Consensus 367 ~~~~h------~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~---~~~~~~ 437 (479)
.+..| .-.|++++|+.++.-+||+-. |-.|+++.-.. +....+..... ..+.+-.+..||.. |..+-|
T Consensus 325 ~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~IYLF~~~~-~~G~~p~~~s~-~~~~~k~vYKGHrN~~TVKgVNF 401 (559)
T KOG1334|consen 325 KFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDIYLFNKSM-GDGSEPDPSSP-REQYVKRVYKGHRNSRTVKGVNF 401 (559)
T ss_pred hcCCccccccCcccceeEEecCCccceeeeec-ccceEEecccc-ccCCCCCCCcc-hhhccchhhcccccccccceeee
Confidence 44333 246999999977776775555 66799995443 22211111110 00112234678877 667766
Q ss_pred -ecCCCeeeecCCCccccceeEEEEee
Q 011709 438 -VLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 438 -sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
-|+..++++|++ .|.|-+|+-
T Consensus 402 fGPrsEyVvSGSD-----CGhIFiW~K 423 (559)
T KOG1334|consen 402 FGPRSEYVVSGSD-----CGHIFIWDK 423 (559)
T ss_pred ccCccceEEecCc-----cceEEEEec
Confidence 599999999999 999999963
No 184
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=1.8e-15 Score=148.05 Aligned_cols=249 Identities=24% Similarity=0.464 Sum_probs=190.9
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeee-cCCCC-cEE
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAM-CPTEP-YVL 212 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~-s~~~~-~l~ 212 (479)
....|...|.++.+.+ .+..++.++.|+.+.+|+..... .....+.++....+..+.+ ++++. .++
T Consensus 60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (466)
T COG2319 60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGE-----------KLIKSLEGLHDSSVSKLALSSPDGNSILL 127 (466)
T ss_pred eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCc-----------eeEEEEeccCCCceeeEEEECCCcceEEe
Confidence 4568899999999999 77788888899999999998872 1344455433223556666 77777 555
Q ss_pred EecC-CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 213 SGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 213 s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
..+. |+.+.+|++... ......+..|...|..++|+|++
T Consensus 128 ~~~~~d~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~v~~~~~~~~~- 167 (466)
T COG2319 128 ASSSLDGTVKLWDLSTP---------------------------------------GKLIRTLEGHSESVTSLAFSPDG- 167 (466)
T ss_pred ccCCCCccEEEEEecCC---------------------------------------CeEEEEEecCcccEEEEEECCCC-
Confidence 5444 999999999740 11225677899999999999999
Q ss_pred cEEEEEec-CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCc-EEEEEeCCCcEEEEecCCCCCCCCCCcee-ee
Q 011709 292 QEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPIN-KF 368 (479)
Q Consensus 292 ~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~~~-~~ 368 (479)
..+++++. |+.+++|++.... .+..+.+|...|.+++|+| ++. ++++++.|+.|++||.+. +..+. .+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~------~~~~~~~~ 238 (466)
T COG2319 168 KLLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLST------GKLLRSTL 238 (466)
T ss_pred CEEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCC------CcEEeeec
Confidence 47777775 9999999999866 5777778999999999998 776 566669999999998885 56666 68
Q ss_pred cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeec
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDN 447 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~ 447 (479)
.+|...+ -..|+|++. ++++++.|+.+++||+..... .+....+|.. +.++.|+|++..++++
T Consensus 239 ~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 239 SGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSS--------------LLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred CCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCc--------------EEEEEecCCccEEEEEECCCCCEEEEe
Confidence 8888875 448999995 567999999999999987421 1112255644 8899999998888886
Q ss_pred CCCccccceeEEEEeecc
Q 011709 448 NHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 448 ~~~~~~~d~~i~i~~~~~ 465 (479)
+. ++.+++|+...
T Consensus 303 ~~-----d~~~~~~~~~~ 315 (466)
T COG2319 303 SS-----DGTVRLWDLET 315 (466)
T ss_pred eC-----CCcEEEEEcCC
Confidence 66 77799995443
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.1e-17 Score=142.74 Aligned_cols=195 Identities=22% Similarity=0.307 Sum_probs=147.7
Q ss_pred CcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee
Q 011709 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 209 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (479)
..+|++-..|.|++||..++. .+..++++...++.+.|..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~----------------------------------------~l~~fk~~~~~~N~vrf~~ 80 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ----------------------------------------LLEEFKGPPATTNGVRFIS 80 (376)
T ss_pred eeEEEEecCCeEEEEeccchh----------------------------------------hhheecCCCCcccceEEec
Confidence 457888889999999986532 2367788888899999987
Q ss_pred C-CCcEEEEEecCCeEEEEeCCCCCCCceeeeccCC-CCeEEEEecCCCCcEEEEEeC----CCcEEEEecCCCCCCCCC
Q 011709 289 S-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSA----DNSVRMFDRRNLTSNGVG 362 (479)
Q Consensus 289 ~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~l~tgs~----dg~I~iwd~~~~~~~~~~ 362 (479)
+ ++..+.+|+.||+|++||+|............+. .+..+++.+- .++.+++|.. |-.|.+||+|..+
T Consensus 81 ~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q----- 154 (376)
T KOG1188|consen 81 CDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQ----- 154 (376)
T ss_pred CCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEecccc-----
Confidence 4 6678999999999999999998755555555555 5778888876 6788888865 5689999999843
Q ss_pred Cceee-ecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCC
Q 011709 363 SPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRE 441 (479)
Q Consensus 363 ~~~~~-~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~ 441 (479)
+++.. ...|.+-|++++|+|..+.+|+|||.||.|.|+|+...... -.|+-+.---.+|..+.|..++
T Consensus 155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee-----------DaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE-----------DALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch-----------hhHHHhhcccceeeeeeeecCC
Confidence 33444 36799999999999999999999999999999999874111 1222222222458899998776
Q ss_pred -CeeeecCCCccccceeEEEEeecc
Q 011709 442 -SCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 442 -~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
..|.+-.. .....+|....
T Consensus 224 ykrI~clTH-----~Etf~~~ele~ 243 (376)
T KOG1188|consen 224 YKRIMCLTH-----METFAIYELED 243 (376)
T ss_pred cceEEEEEc-----cCceeEEEccC
Confidence 44666666 66778885443
No 186
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.8e-17 Score=152.48 Aligned_cols=234 Identities=18% Similarity=0.272 Sum_probs=164.5
Q ss_pred CcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCC
Q 011709 187 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 266 (479)
Q Consensus 187 ~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (479)
....+.||++ .|+||+|+.+|.+|+|||.|-.+.|||.-..+..
T Consensus 42 lE~eL~GH~G-CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll----------------------------------- 85 (758)
T KOG1310|consen 42 LEAELTGHTG-CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL----------------------------------- 85 (758)
T ss_pred hhhhhccccc-eecceeecCCCCEEeecCCcceEEeecchhccee-----------------------------------
Confidence 3456899997 6999999999999999999999999998532221
Q ss_pred CCCCceeecCCCCceEEEEEeeC-CCcEEEEEecCCeEEEEeCCCCCC--------CceeeeccCCCCeEEEEecCCCCc
Q 011709 267 SVGPRGIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTS--------PVIKVEKAHDADLHCVDWNPLDDN 337 (479)
Q Consensus 267 ~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~v~~l~~sp~~~~ 337 (479)
...-.+|...|.++.|-|. +..++++|..|..|+++|+...+. ........|...|..++-.|...+
T Consensus 86 ----hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph 161 (758)
T KOG1310|consen 86 ----HSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH 161 (758)
T ss_pred ----eeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc
Confidence 1233579999999999984 446899999999999999985221 123344578889999999995559
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCC-C---CceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCC
Q 011709 338 LILTGSADNSVRMFDRRNLTSNGV-G---SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 413 (479)
Q Consensus 338 ~l~tgs~dg~I~iwd~~~~~~~~~-~---~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~ 413 (479)
.+.+++.||+|+-+|+|.+..-.. . ..+..+...--...++..+|..+++||.|+.|--.++||.++.........
T Consensus 162 tfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~ 241 (758)
T KOG1310|consen 162 TFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDG 241 (758)
T ss_pred eEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCc
Confidence 999999999999999998532110 0 111112222245789999999999999999999999999776322222222
Q ss_pred CCCCCCC-----eeEEEeCCCC-C-----------ceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 414 RTTNYPA-----GLFFQHAGHS-P-----------SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 414 ~~~~~~~-----~l~~~~~gh~-~-----------~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
.....|| ...|.. ||. . .+-+.|+|+|.-|+..-. .-.|.++++-+.
T Consensus 242 ~~~~~pp~~~~cv~yf~p-~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~-----gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 242 TMNTCPPKDCRCVRYFSP-GHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG-----GEHVYLFDVNED 305 (758)
T ss_pred cccCCCCcccchhheecC-ccccCcccccccceeeeEEEEECCCCcEEEEeeC-----CeEEEEEeecCC
Confidence 2122222 123332 332 1 356889999876655444 458888875543
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=5.1e-17 Score=149.17 Aligned_cols=178 Identities=15% Similarity=0.264 Sum_probs=138.6
Q ss_pred EEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCC
Q 011709 190 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 269 (479)
Q Consensus 190 ~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (479)
....|.+ ++.+-.|+|+|.-|++++.||.|++|.-....
T Consensus 99 sv~AH~~-A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML---------------------------------------- 137 (737)
T KOG1524|consen 99 SISAHAA-AISSGRWSPDGAGLLTAGEDGVIKIWSRSGML---------------------------------------- 137 (737)
T ss_pred hhhhhhh-hhhhcccCCCCceeeeecCCceEEEEeccchH----------------------------------------
Confidence 3456775 57899999999999999999999999754211
Q ss_pred CceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEE
Q 011709 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR 349 (479)
Q Consensus 270 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~ 349 (479)
+.++.....+|+|++|.|+..+++++.+ +.+.|=-+.... .+....+|.+-|.++.|++ ..+++++|+.|-..+
T Consensus 138 -RStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~--k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfK 211 (737)
T KOG1524|consen 138 -RSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS--KIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFK 211 (737)
T ss_pred -HHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccccc--ceeEEeccCcEEEEeecCc-cccceeecCCceeEE
Confidence 1233335678999999999877776654 556666666555 3445569999999999999 899999999999999
Q ss_pred EEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC
Q 011709 350 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 429 (479)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh 429 (479)
|||-. |.++..-..|.-+|++++|+|+ . +++.+|.. ++| ++. .--
T Consensus 212 vWD~~-------G~~Lf~S~~~ey~ITSva~npd-~-~~~v~S~n-t~R---~~~----------------------p~~ 256 (737)
T KOG1524|consen 212 IWDAQ-------GANLFTSAAEEYAITSVAFNPE-K-DYLLWSYN-TAR---FSS----------------------PRV 256 (737)
T ss_pred eeccc-------CcccccCChhccceeeeeeccc-c-ceeeeeee-eee---ecC----------------------CCc
Confidence 99987 6888888999999999999999 4 56677643 444 222 112
Q ss_pred CCceeEEEecCCCeeeecCC
Q 011709 430 SPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 430 ~~~~~~~~sp~~~~l~~~~~ 449 (479)
.++..++||+||..+++|..
T Consensus 257 GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred cceEEEEEcCCCceeecccc
Confidence 34789999999999998876
No 188
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.1e-15 Score=124.41 Aligned_cols=252 Identities=14% Similarity=0.160 Sum_probs=168.8
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCC-CCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATN-SRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
+....+|.++|+.++|.. .+|.+|++ |.|+=|..............-. ..+.+. ..-.-..|++|...|..+-+
T Consensus 55 iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~-~~~evPeINam~ldP~enSi 129 (325)
T KOG0649|consen 55 IVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQV-DAVEVPEINAMWLDPSENSI 129 (325)
T ss_pred eeeccccCCCeeeeeeeh---hheeeccC-ceEEEeeehhhhhhccchhhhhhcCcccc-CcccCCccceeEeccCCCcE
Confidence 455579999999999973 46777765 9999998876533111000000 011111 01111358999999988877
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
+.++.|+.+.-||++++.. ...++||+..|.+++-....
T Consensus 130 ~~AgGD~~~y~~dlE~G~i----------------------------------------~r~~rGHtDYvH~vv~R~~~- 168 (325)
T KOG0649|consen 130 LFAGGDGVIYQVDLEDGRI----------------------------------------QREYRGHTDYVHSVVGRNAN- 168 (325)
T ss_pred EEecCCeEEEEEEecCCEE----------------------------------------EEEEcCCcceeeeeeecccC-
Confidence 7777899999999986543 27899999999999985544
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeec---------cC-CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEK---------AH-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~-~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~ 361 (479)
..+++|++||++|+||+++++ .+..+. .| ...|-+++- +...+++|+ ...+.+|.+|..
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k--~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslwhLrss----- 237 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQK--HVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLWHLRSS----- 237 (325)
T ss_pred cceeecCCCccEEEEeccccc--eeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEEeccCC-----
Confidence 358999999999999999988 344332 12 234666766 446777665 568999999994
Q ss_pred CCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecC-
Q 011709 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLR- 440 (479)
Q Consensus 362 ~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~- 440 (479)
++...+. -...|.-+.|..+ .+++++..+.|.-|.+.-. .+ ..+..+|....+..|+-.
T Consensus 238 -e~t~vfp-ipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~Gv--l~-------------a~ip~~s~~c~s~s~~~~p 297 (325)
T KOG0649|consen 238 -ESTCVFP-IPARVHLVDFVDD---CVLIGGEGNHVQSYTLNGV--LQ-------------ANIPVESTACYSASWQTSP 297 (325)
T ss_pred -CceEEEe-cccceeEeeeecc---eEEEeccccceeeeeeccE--EE-------------EeccCCccceeeecccCCc
Confidence 4554443 2345777888766 3457887889999988752 11 223445556677777643
Q ss_pred CCeeeecCCCccccceeEEEEeeccc
Q 011709 441 ESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 441 ~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
.++|..+|. ...+.++....+
T Consensus 298 ~k~~s~ag~-----s~~~~i~~~~~~ 318 (325)
T KOG0649|consen 298 IKFISIAGF-----SNKLHILKDFRF 318 (325)
T ss_pred eEEEEeccc-----ceeeeeeecccc
Confidence 456666676 677777755443
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=7e-16 Score=149.63 Aligned_cols=239 Identities=18% Similarity=0.338 Sum_probs=168.1
Q ss_pred CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC-CcEEEecCCCcEEEEecCCCccccccCCccccc
Q 011709 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKS 241 (479)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 241 (479)
+.+.||++... ..+...+.... .|+|+.|+|.. .+|+.|..+|.|.+||++.+........
T Consensus 222 ~~~~vW~~~~p-----------~~Pe~~~~~~s--~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l----- 283 (555)
T KOG1587|consen 222 GVLLVWSLKNP-----------NTPELVLESPS--EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL----- 283 (555)
T ss_pred ceEEEEecCCC-----------CCceEEEecCC--ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc-----
Confidence 47999999875 13444444444 58999999975 5777888999999999986544210000
Q ss_pred CCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC-cEEEEEecCCeEEEEeCCCCCCCceeeec
Q 011709 242 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGTSPVIKVEK 320 (479)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 320 (479)
-.....|..+|..+.|..+.. .-|++++.||.|..|+++.-..|......
T Consensus 284 -----------------------------s~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~ 334 (555)
T KOG1587|consen 284 -----------------------------SALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLL 334 (555)
T ss_pred -----------------------------ccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccc
Confidence 022335889999999976431 34889999999999999876643222111
Q ss_pred ----------cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC--CCCceeeecCCCCcEEEEEEecCCCcEE
Q 011709 321 ----------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG--VGSPINKFEGHSAAVLCVQWSPDKSSVF 388 (479)
Q Consensus 321 ----------~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~p~~~~ll 388 (479)
.....+++++|.+.+.+.|+.|+++|.|.-=+........ ..+.+..+..|.++|+++.++|-+..+|
T Consensus 335 ~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 335 ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcccee
Confidence 2235689999999889999999999999874444322110 1133556678899999999999999888
Q ss_pred EEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecccc
Q 011709 389 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEAL 467 (479)
Q Consensus 389 as~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~ 467 (479)
.+++ |.+|+||.-..... .++...-+.. +++++|||-...+++..++ +|.|.+||.....
T Consensus 415 ls~g-DW~vriWs~~~~~~--------------Pl~~~~~~~~~v~~vaWSptrpavF~~~d~----~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 415 LSVG-DWTVRIWSEDVIAS--------------PLLSLDSSPDYVTDVAWSPTRPAVFATVDG----DGNLDIWDLLQDD 475 (555)
T ss_pred eeec-cceeEeccccCCCC--------------cchhhhhccceeeeeEEcCcCceEEEEEcC----CCceehhhhhccc
Confidence 7777 99999999773111 1333344444 8999999987666665555 9999999876553
No 190
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=4.5e-16 Score=155.89 Aligned_cols=281 Identities=16% Similarity=0.164 Sum_probs=183.3
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
+.....|...|+.++.++.++.+++|||.||+|++||........ ...+...++.. .++.+.++...+.+..+|
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-----~s~rS~ltys~-~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-----GSARSELTYSP-EGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-----ceeeeeEEEec-cCCceEEEEeccCCCeEE
Confidence 455668999999999999888999999999999999998753221 11223333332 334689999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
.++.||.|++.+++.......... ...+.........|..-+|......
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~-------------------------------~~ri~n~~~~g~vv~m~a~~~~~~S 1163 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVAT-------------------------------QVRIPNLKKDGVVVSMHAFTAIVQS 1163 (1431)
T ss_pred EEcCCCeEEEEEccccccccceee-------------------------------eeecccccCCCceEEeecccccccc
Confidence 999999999999975311000000 0000111111122333334332223
Q ss_pred -EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec-C
Q 011709 293 -EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-G 370 (479)
Q Consensus 293 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~-~ 370 (479)
.++.+..-+.|..||+++.............+.|++++.+| .++++++|+..|.+-+||+|- +.++..+. +
T Consensus 1164 ~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF------~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1164 HVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRF------RVPILSWEHP 1236 (1431)
T ss_pred eeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeec------CceeecccCc
Confidence 67888888999999999876211111223457899999999 899999999999999999998 67777764 3
Q ss_pred CCCcEEEEEEecCCC--cEEEEEe--CCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEe-------CCCCCceeEEEec
Q 011709 371 HSAAVLCVQWSPDKS--SVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-------AGHSPSSSIKFVL 439 (479)
Q Consensus 371 h~~~v~~l~~~p~~~--~llas~s--~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~-------~gh~~~~~~~~sp 439 (479)
+..+|..+..+|-.+ ...++++ ..+-|.+|++.++ ..+......+ ..+.+-... .+........+.-
T Consensus 1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g-~~~~vl~~s~-~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~ 1314 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG-LRQTVLWASD-GAPILSYALPSNDARKPDSLAGISCGVCE 1314 (1431)
T ss_pred ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC-cceEEEEcCC-CCcchhhhcccccCCCCCcccceeeeccc
Confidence 457888888887655 3333444 4788999999995 4333322221 111111111 1112234555555
Q ss_pred CCCeeeecCCCccccceeEEEEeec
Q 011709 440 RESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 440 ~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.+..+.+||. |..|+.|+..
T Consensus 1315 ~~~~~ltggs-----d~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1315 KNGFLLTGGS-----DMKIRKWDPT 1334 (1431)
T ss_pred CCceeeecCC-----ccceeeccCC
Confidence 6778888888 9999999743
No 191
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.1e-16 Score=143.28 Aligned_cols=200 Identities=17% Similarity=0.217 Sum_probs=146.6
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEE
Q 011709 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW 223 (479)
Q Consensus 144 ~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vw 223 (479)
.+++|+. ++..||+|+.||++|||++... ..+.....|+. .|.+|.|+|||++|++-+.| ..+||
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~------------~t~l~e~~~~~-eV~DL~FS~dgk~lasig~d-~~~VW 212 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSM------------LTILEEIAHHA-EVKDLDFSPDGKFLASIGAD-SARVW 212 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcc------------hhhhhhHhhcC-ccccceeCCCCcEEEEecCC-ceEEE
Confidence 6788888 8889999999999999998876 44555667776 49999999999999999999 89999
Q ss_pred ecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC---CcEEEE-Eec
Q 011709 224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS---AQEFCS-VGD 299 (479)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s-~~~ 299 (479)
+++++.......+ .+.......+.|+.++ ..++++ ...
T Consensus 213 ~~~~g~~~a~~t~--------------------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~ 254 (398)
T KOG0771|consen 213 SVNTGAALARKTP--------------------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFP 254 (398)
T ss_pred EeccCchhhhcCC--------------------------------------cccchhhhhceecccCCCceEEEEEecCC
Confidence 9987633221111 1122234455555443 122222 334
Q ss_pred CCeEEEEeCCCCCC----CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCce-eeecCCCCc
Q 011709 300 DSCLILWDARVGTS----PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI-NKFEGHSAA 374 (479)
Q Consensus 300 dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~-~~~~~h~~~ 374 (479)
-+.|+.||+..... +..+.. .....|.+++.++ +|+++|.|+.||.|-|++.... +.+ ..-+.|...
T Consensus 255 ~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~l------q~~~~vk~aH~~~ 326 (398)
T KOG0771|consen 255 GGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSL------QRLQYVKEAHLGF 326 (398)
T ss_pred CCceeEEEeeeeccccccchhhhh-hccCcceeEEEcC-CCcEEEEeccCCcEEEEEecee------eeeEeehhhheee
Confidence 45677777765442 111111 2345799999999 9999999999999999999884 333 344689999
Q ss_pred EEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
|+.+.|+|+.++ +++.+.|....|..+...
T Consensus 327 VT~ltF~Pdsr~-~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 327 VTGLTFSPDSRY-LASVSSDNEAAVTKLAVD 356 (398)
T ss_pred eeeEEEcCCcCc-ccccccCCceeEEEEeec
Confidence 999999999997 578888999999888763
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.72 E-value=1.3e-14 Score=141.86 Aligned_cols=251 Identities=25% Similarity=0.478 Sum_probs=185.7
Q ss_pred eeEEEecCCCceeEEEecCCCCcEEEEEeC-CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-
Q 011709 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP- 209 (479)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~- 209 (479)
.......|...|..+.|+| ++..+++++. |+.+++|+.... .....+.+|.. .|.+++|+|++.
T Consensus 147 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~ 212 (466)
T COG2319 147 LIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTG------------KPLSTLAGHTD-PVSSLAFSPDGGL 212 (466)
T ss_pred EEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCC------------ceEEeeccCCC-ceEEEEEcCCcce
Confidence 3566788999999999999 6668888875 999999999875 55667777886 589999999998
Q ss_pred cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCce-eecCCCCceEEEEEee
Q 011709 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG-IYNGHEDTVEDVTFCP 288 (479)
Q Consensus 210 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~ 288 (479)
.+++++.|+.|++||...+.. .. .+.+|...+ ...|++
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~----------------------------------------~~~~~~~~~~~~-~~~~~~ 251 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKL----------------------------------------LRSTLSGHSDSV-VSSFSP 251 (466)
T ss_pred EEEEecCCCcEEEEECCCCcE----------------------------------------EeeecCCCCcce-eEeECC
Confidence 556669999999997752221 12 355676664 338999
Q ss_pred CCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee
Q 011709 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
++ .++++++.|+.+++||++.... .......|...+.++.|+| ++..+++++.|+.+.+||.+. .......
T Consensus 252 ~~-~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~------~~~~~~~ 322 (466)
T COG2319 252 DG-SLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLET------GKLLSSL 322 (466)
T ss_pred CC-CEEEEecCCCcEEEeeecCCCc-EEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCC------CceEEEe
Confidence 98 6788999999999999998774 2333367899999999999 788888899999999999887 3444444
Q ss_pred c--CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeee
Q 011709 369 E--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVD 446 (479)
Q Consensus 369 ~--~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~ 446 (479)
. .|...+..+.|.+++..++.++..|+.+.+|++.... ..........+..+.+.+ ...++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~-~~~~~~ 386 (466)
T COG2319 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---------------PLKTLEGHSNVLSVSFSP-DGRVVS 386 (466)
T ss_pred eecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---------------eeEEecCCceEEEEEECC-CCCEEE
Confidence 4 7888899999933324444444678999999998842 122222223378888888 544444
Q ss_pred -cCCCccccceeEEEEeecccc
Q 011709 447 -NNHGLSYANKKIKIYCHLEAL 467 (479)
Q Consensus 447 -~~~~~~~~d~~i~i~~~~~~~ 467 (479)
+.. ++.+.+|+.....
T Consensus 387 ~~~~-----~~~~~~~~~~~~~ 403 (466)
T COG2319 387 SGST-----DGTVRLWDLSTGS 403 (466)
T ss_pred EecC-----CCceEEEecccCe
Confidence 344 8899999766553
No 193
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=4.7e-16 Score=130.81 Aligned_cols=165 Identities=19% Similarity=0.323 Sum_probs=126.3
Q ss_pred eeeeeecCC-CC--cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec
Q 011709 199 EFALAMCPT-EP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN 275 (479)
Q Consensus 199 v~~l~~s~~-~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (479)
+.|..|..+ +. +|+.|..+|.+.+||+.++.....+.. ..+......
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~------------------------------~~kv~~~~a 202 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ------------------------------SSKVESPNA 202 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc------------------------------ccccccchh
Confidence 556665443 22 577888999999999987633322211 111123445
Q ss_pred CCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCC--CCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEec
Q 011709 276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG--TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 353 (479)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~ 353 (479)
.|..+|.++.+.+.- ..=++|+.+..+..|.+... ..+......-....|..+..-| |++.+||++.|+.||||..
T Consensus 203 sh~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 203 SHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSW 280 (323)
T ss_pred hccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEe
Confidence 699999999998754 34567788888899988754 3223333333456788999999 9999999999999999999
Q ss_pred CCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeC
Q 011709 354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 402 (479)
Q Consensus 354 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~ 402 (479)
|+ ..++..+..|.+.|++++|+|+.+ ++|.+|.|++|.+|++
T Consensus 281 rt------l~pLAVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 RT------LNPLAVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred cc------CCchhhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence 99 789999999999999999999987 7899999999999986
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.3e-15 Score=134.90 Aligned_cols=200 Identities=16% Similarity=0.251 Sum_probs=148.1
Q ss_pred eeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 011709 200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 279 (479)
Q Consensus 200 ~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (479)
.+++|+.+|..|++|+.||++|+|+..+.. .+.....|..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~----------------------------------------t~l~e~~~~~ 187 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML----------------------------------------TILEEIAHHA 187 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch----------------------------------------hhhhhHhhcC
Confidence 589999999999999999999999964322 2244556889
Q ss_pred ceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeee--ccCCCCeEEEEecCCCC---c--EEEEEeCCCcEEEEe
Q 011709 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDD---N--LILTGSADNSVRMFD 352 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~sp~~~---~--~l~tgs~dg~I~iwd 352 (479)
.|.++.|+|++ .+|++.+.| ..+|||++++. .+... ..-+..+..+.|+. ++ . +++.-..-+.|+.||
T Consensus 188 eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~--~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~ 262 (398)
T KOG0771|consen 188 EVKDLDFSPDG-KFLASIGAD-SARVWSVNTGA--ALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCD 262 (398)
T ss_pred ccccceeCCCC-cEEEEecCC-ceEEEEeccCc--hhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeEEE
Confidence 99999999999 789999999 89999999986 33332 23445567788887 55 2 333333356788888
Q ss_pred cCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-
Q 011709 353 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP- 431 (479)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~- 431 (479)
+......... +..+...-...|++++.+++|+ ++|.|+.||.|.|++.... ..+.++...|..
T Consensus 263 ~~~w~~~~~l-~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~l--------------q~~~~vk~aH~~~ 326 (398)
T KOG0771|consen 263 ISLWSGSNFL-RLRKKIKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSL--------------QRLQYVKEAHLGF 326 (398)
T ss_pred eeeecccccc-chhhhhhccCcceeEEEcCCCc-EEEEeccCCcEEEEEecee--------------eeeEeehhhheee
Confidence 8765422111 2222222335799999999999 5899999999999998874 245567777877
Q ss_pred ceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 432 SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 432 ~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
|+.+.|+||.+++++.+. +..+.+.....
T Consensus 327 VT~ltF~Pdsr~~~svSs-----~~~~~v~~l~v 355 (398)
T KOG0771|consen 327 VTGLTFSPDSRYLASVSS-----DNEAAVTKLAV 355 (398)
T ss_pred eeeEEEcCCcCccccccc-----CCceeEEEEee
Confidence 999999999999999887 66776664443
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2e-15 Score=147.35 Aligned_cols=221 Identities=11% Similarity=0.070 Sum_probs=144.0
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
....|.+.|...+|+| +++.||..+.+ ..|++||+.++.. +.+..+.+| ...++|+|+|+.|
T Consensus 198 ~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~----------~~l~~~~g~----~~~~~wSPDG~~L 262 (429)
T PRK01742 198 IVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGAR----------KVVASFRGH----NGAPAFSPDGSRL 262 (429)
T ss_pred EeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCce----------EEEecCCCc----cCceeECCCCCEE
Confidence 3456788899999999 77778777643 3699999987621 112223333 3468999999988
Q ss_pred EEec-CCCcEEEEec--CCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee
Q 011709 212 LSGG-KDKSVVLWSI--QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 212 ~s~s-~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (479)
+.++ .+|.+.||.+ .++. ...+..+...+.+..|+|
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~-----------------------------------------~~~lt~~~~~~~~~~wSp 301 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGT-----------------------------------------PSQLTSGAGNNTEPSWSP 301 (429)
T ss_pred EEEEecCCcEEEEEEECCCCC-----------------------------------------eEeeccCCCCcCCEEECC
Confidence 8764 6887776644 3221 133444566678899999
Q ss_pred CCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee
Q 011709 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
+|..+++++..+|...+|++...... ...+ .+.. .+.+|+| ++++|+.++.++ +.+||+.+ +......
T Consensus 302 DG~~i~f~s~~~g~~~I~~~~~~~~~-~~~l-~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~------g~~~~lt 369 (429)
T PRK01742 302 DGQSILFTSDRSGSPQVYRMSASGGG-ASLV-GGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTS------GSTEVLS 369 (429)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCC-eEEe-cCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCC------CCeEEec
Confidence 99655666667888899987653321 2222 3333 4678999 899998887765 55599987 3332211
Q ss_pred cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC-CCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecC
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK-VGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLR 440 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~-~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~ 440 (479)
..+ ....+.|+|+++. |+.++.++.+.+|++.. .+ .......+|.. +...+|+|-
T Consensus 370 ~~~--~~~~~~~sPdG~~-i~~~s~~g~~~~l~~~~~~G--------------~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 370 STF--LDESPSISPNGIM-IIYSSTQGLGKVLQLVSADG--------------RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCC--CCCCceECCCCCE-EEEEEcCCCceEEEEEECCC--------------CceEEccCCCCCCCCcccCCC
Confidence 222 2356789999995 56777788888888642 11 11223334444 788999984
No 196
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=8.9e-16 Score=135.88 Aligned_cols=178 Identities=17% Similarity=0.262 Sum_probs=139.3
Q ss_pred CcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCC
Q 011709 187 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 266 (479)
Q Consensus 187 ~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (479)
+...+.+|.+ .|++|.|+.++++|++|+.|..++||++...... .
T Consensus 48 ~qKD~~~H~G-CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~----------------------------------k 92 (609)
T KOG4227|consen 48 CQKDVREHTG-CINALQFSHNDRFLASGGDDMHGRVWNVDELMVR----------------------------------K 92 (609)
T ss_pred hhhhhhhhcc-ccceeeeccCCeEEeecCCcceeeeechHHHHhh----------------------------------c
Confidence 3445788997 6999999999999999999999999999754332 2
Q ss_pred CCCCceeec-CCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCC---CCeEEEEecCCCCcEEEEE
Q 011709 267 SVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD---ADLHCVDWNPLDDNLILTG 342 (479)
Q Consensus 267 ~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~l~tg 342 (479)
+.+++.... .|...|.+++|...+ .++++|..+++|.+.|+.+.+ .+... .|. +.|+.+..+| ..+.|++.
T Consensus 93 ~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt~q--si~V~-~~~~~~~~VY~m~~~P-~DN~~~~~ 167 (609)
T KOG4227|consen 93 TPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIETKQ--SIYVA-NENNNRGDVYHMDQHP-TDNTLIVV 167 (609)
T ss_pred CCCCceeccCccccceEEEEEccCC-eeEecCCCcceeEeeecccce--eeeee-cccCcccceeecccCC-CCceEEEE
Confidence 223333333 366889999998877 789999999999999999987 34443 344 5999999999 78999999
Q ss_pred eCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCc
Q 011709 343 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 407 (479)
Q Consensus 343 s~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~ 407 (479)
+.+|.|.+||.|..... +.++. +........++.|+|..+.||++.+..+-+.+||+++...
T Consensus 168 t~~~~V~~~D~Rd~~~~--~~~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~ 229 (609)
T KOG4227|consen 168 TRAKLVSFIDNRDRQNP--ISLVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR 229 (609)
T ss_pred ecCceEEEEeccCCCCC--Cceee-ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc
Confidence 99999999999974311 12221 2223456789999999999999999999999999998643
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.1e-15 Score=147.76 Aligned_cols=264 Identities=17% Similarity=0.242 Sum_probs=172.5
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEecc--CCCceeeeeecCC--CCcEEEecC
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH--QDNAEFALAMCPT--EPYVLSGGK 216 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~~v~~l~~s~~--~~~l~s~s~ 216 (479)
++-..+.|+|. ...++++.+.-.|+|||.+.+.... .+..+ ....|+.+.+-.. ...|++|+.
T Consensus 1065 ~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~e~~~~l~------------~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~ 1131 (1387)
T KOG1517|consen 1065 QPPKTLKFHPF-EPQIAAADDRERIRVWDWEKGRLLN------------GFDNGAFPDTRVSDLELINEQDDALLLTASS 1131 (1387)
T ss_pred CCCceeeecCC-CceeEEcCCcceEEEEecccCceec------------cccCCCCCCCccceeeeecccchhheeeecc
Confidence 34566788884 4467777766699999999884322 22211 1234778887654 458999999
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
||.|+||+--..... .+ .++.. |..-. ..+.+..+.=.-+.|..+. .+|++
T Consensus 1132 dGvIRIwk~y~~~~~---~~----------eLVTa-----------w~~Ls----~~~~~~r~~~~v~dWqQ~~-G~Ll~ 1182 (1387)
T KOG1517|consen 1132 DGVIRIWKDYADKWK---KP----------ELVTA-----------WSSLS----DQLPGARGTGLVVDWQQQS-GHLLV 1182 (1387)
T ss_pred CceEEEecccccccC---Cc----------eeEEe-----------ecccc----ccCccCCCCCeeeehhhhC-CeEEe
Confidence 999999975321100 00 00000 00000 0011111111335676665 35666
Q ss_pred EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCc--
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA-- 374 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-- 374 (479)
+++-..|+|||...... +.....+....|+++.-+...|+.|++|..||.|++||.|.... ..++...+.|...
T Consensus 1183 tGd~r~IRIWDa~~E~~-~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~---ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1183 TGDVRSIRIWDAHKEQV-VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP---DSLVCVYREHNDVEP 1258 (1387)
T ss_pred cCCeeEEEEEeccccee-EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc---cccceeecccCCccc
Confidence 66788999999987662 23333456677888877765689999999999999999998543 2467888889887
Q ss_pred EEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC-CceeEEEecCCCeeeecCCCccc
Q 011709 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS-PSSSIKFVLRESCLVDNNHGLSY 453 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~-~~~~~~~sp~~~~l~~~~~~~~~ 453 (479)
|..+.+.+.|-.-|++|+.||.|++||+++. ..... .. +..|.... ..+++..+++...+++|+.
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~--------~~-iv~~~~yGs~lTal~VH~hapiiAsGs~---- 1324 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETF--------LT-IVAHWEYGSALTALTVHEHAPIIASGSA---- 1324 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccC-ccccc--------ce-eeeccccCccceeeeeccCCCeeeecCc----
Confidence 9999999877554679999999999999983 11111 11 11222112 3788999999999998876
Q ss_pred cceeEEEEeeccc
Q 011709 454 ANKKIKIYCHLEA 466 (479)
Q Consensus 454 ~d~~i~i~~~~~~ 466 (479)
+.|+||+....
T Consensus 1325 --q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1325 --QLIKIYSLSGE 1335 (1387)
T ss_pred --ceEEEEecChh
Confidence 49999976543
No 198
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=1.2e-16 Score=144.41 Aligned_cols=230 Identities=12% Similarity=0.183 Sum_probs=184.2
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEE
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~ 221 (479)
.-..+.|.. +|..|+.|+..|.|..+|+.+. .....+... ..|..+.|-.+.+++|++- ...+.
T Consensus 131 GPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~------------~L~~Ei~v~--Etv~Dv~~LHneq~~AVAQ-K~y~y 194 (545)
T KOG1272|consen 131 GPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTK------------KLHFEINVM--ETVRDVTFLHNEQFFAVAQ-KKYVY 194 (545)
T ss_pred CCeeeeecC-CccEEEecCCccceeeeecccc------------eeeeeeehh--hhhhhhhhhcchHHHHhhh-hceEE
Confidence 356788888 8999999999999999999988 333333333 3588999998888887764 67899
Q ss_pred EEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC
Q 011709 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (479)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (479)
|||-..-+. +-++.| ..|..+.|-|.. .+|+++++.|
T Consensus 195 vYD~~GtEl-----------------------------------------HClk~~-~~v~rLeFLPyH-fLL~~~~~~G 231 (545)
T KOG1272|consen 195 VYDNNGTEL-----------------------------------------HCLKRH-IRVARLEFLPYH-FLLVAASEAG 231 (545)
T ss_pred EecCCCcEE-----------------------------------------eehhhc-Cchhhhcccchh-heeeecccCC
Confidence 998653221 333333 468899999988 7899999999
Q ss_pred eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEe
Q 011709 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381 (479)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 381 (479)
.++.-|+.+++ ++..+....+.+..++-+| -...+-+|...|+|.+|...+ ..|+..+-.|.++|.+|++.
T Consensus 232 ~L~Y~DVS~Gk--lVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~s------kePLvKiLcH~g~V~siAv~ 302 (545)
T KOG1272|consen 232 FLKYQDVSTGK--LVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNS------KEPLVKILCHRGPVSSIAVD 302 (545)
T ss_pred ceEEEeechhh--hhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCC------cchHHHHHhcCCCcceEEEC
Confidence 99999999999 6777777888999999999 778999999999999999988 68999999999999999999
Q ss_pred cCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEE
Q 011709 382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIY 461 (479)
Q Consensus 382 p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~ 461 (479)
++|.+ +||.|.|..++|||+++..++ ...+. ......+++|..|...++.|+ .+.||
T Consensus 303 ~~G~Y-MaTtG~Dr~~kIWDlR~~~ql--------------~t~~t-p~~a~~ls~SqkglLA~~~G~-------~v~iw 359 (545)
T KOG1272|consen 303 RGGRY-MATTGLDRKVKIWDLRNFYQL--------------HTYRT-PHPASNLSLSQKGLLALSYGD-------HVQIW 359 (545)
T ss_pred CCCcE-EeecccccceeEeeecccccc--------------ceeec-CCCccccccccccceeeecCC-------eeeee
Confidence 99996 689999999999999985321 11111 344678888888776666666 78888
Q ss_pred e
Q 011709 462 C 462 (479)
Q Consensus 462 ~ 462 (479)
.
T Consensus 360 ~ 360 (545)
T KOG1272|consen 360 K 360 (545)
T ss_pred h
Confidence 4
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=1.4e-15 Score=131.53 Aligned_cols=218 Identities=15% Similarity=0.230 Sum_probs=164.6
Q ss_pred ceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC
Q 011709 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (479)
.|+|.+|++++..++.+-....|.|+...... ...+.++++.|
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------------------------------~w~~~htls~H 54 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------------------------------LWEPAHTLSEH 54 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCC-------------------------------------Cceeceehhhh
Confidence 68999999999999999999999999886432 13345788899
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCC-CCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~ 356 (479)
...|+.+.|+|.. +.+++|+.|..-++|... .+.....-.+..++...++|.|+| .++.||+||....|.||-+...
T Consensus 55 d~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~E 132 (361)
T KOG1523|consen 55 DKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQE 132 (361)
T ss_pred CcceeEEeecCCC-CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecc
Confidence 9999999999998 679999999999999994 444444555668899999999999 9999999999999999988752
Q ss_pred CCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCC----CCCCC-CeeEEEeCCCCC
Q 011709 357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR----TTNYP-AGLFFQHAGHSP 431 (479)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~----~~~~~-~~l~~~~~gh~~ 431 (479)
..- .-..+.-+.+...|+++.|+|++- +||.||.|+.++|+..--- .+...+. ....| .+|+.......+
T Consensus 133 NdW--WVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK--~Vdekpap~pWgsk~PFG~lm~E~~~~gg 207 (361)
T KOG1523|consen 133 NDW--WVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIK--GVDEKPAPTPWGSKMPFGQLMSEASSSGG 207 (361)
T ss_pred cce--ehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeee--ccccCCCCCCCccCCcHHHHHHhhccCCC
Confidence 210 001112245678899999999987 7899999999999985431 1111111 11222 234444433333
Q ss_pred -ceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 432 -SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 432 -~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
+..+.|+|.|..|+..+. |..+.+-+..
T Consensus 208 wvh~v~fs~sG~~lawv~H-----ds~v~~~da~ 236 (361)
T KOG1523|consen 208 WVHGVLFSPSGNRLAWVGH-----DSTVSFVDAA 236 (361)
T ss_pred ceeeeEeCCCCCEeeEecC-----CCceEEeecC
Confidence 899999999999999999 8888776543
No 200
>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.
Probab=99.69 E-value=1.1e-17 Score=117.61 Aligned_cols=69 Identities=38% Similarity=0.672 Sum_probs=52.9
Q ss_pred chhhhhccccchhhhhhhhccccccceeeEEecCCccc-CC--CcceEEEEEEEeeCCCCCceEEEEEEEec
Q 011709 41 DDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQ-AT--YKNRQRLYLSEQTDGSVPNTLVIANCEVV 109 (479)
Q Consensus 41 ~~~~~~w~~~~~~~y~~~~~~~l~wpsl~~~w~p~~~~-~~--~~~~~~l~~~~~~~~~~~~~~~i~~~~~~ 109 (479)
+|+|++||+|+|++|++++.+.++||||||+|+|+... .. +..++++++||+++++++|+|.|+.++++
T Consensus 1 ~e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p 72 (74)
T PF12265_consen 1 NEEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNRNYPHSQYLLLGTQTSGQEQNYLYVMKVSLP 72 (74)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT-SEEEEEEEEE---SS-S-EEEEEEEEEEE
T ss_pred CcceeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCCCCccEEEEEEEECcCCCCCCEEEEEEEeCC
Confidence 58999999999999999999999999999999998763 22 35789999999999999999999998764
No 201
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=8.2e-16 Score=143.11 Aligned_cols=208 Identities=18% Similarity=0.320 Sum_probs=163.8
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCc
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~ 210 (479)
..++.|...|+.|.|+. .|++|||...+ ..|.|.++.... ....|.-..+ .|.++.|+|...+
T Consensus 515 ~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~------------sQ~PF~kskG-~vq~v~FHPs~p~ 580 (733)
T KOG0650|consen 515 CIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRK------------SQSPFRKSKG-LVQRVKFHPSKPY 580 (733)
T ss_pred EEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEeccccc------------ccCchhhcCC-ceeEEEecCCCce
Confidence 46788999999999999 89999997664 379999998762 2222333333 5789999999999
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
|+.++ ...|++||+...... ..+......|..++.+|.|
T Consensus 581 lfVaT-q~~vRiYdL~kqelv----------------------------------------KkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 581 LFVAT-QRSVRIYDLSKQELV----------------------------------------KKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred EEEEe-ccceEEEehhHHHHH----------------------------------------HHHhcCCeeeeeeeecCCC
Confidence 98888 478999999653221 3333455679999999999
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCC---CCCCCceee
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS---NGVGSPINK 367 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~---~~~~~~~~~ 367 (479)
+ -++.++.|+.+..+|+.-... ..+.+..|...+.+|+|++ .-.+|++|+.||++.|+--+-... +..--|+..
T Consensus 620 D-nli~gs~d~k~~WfDldlssk-Pyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 620 D-NLILGSYDKKMCWFDLDLSSK-PYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred C-eEEEecCCCeeEEEEcccCcc-hhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 5 488899999999999987765 4667778999999999999 889999999999999986443211 111357788
Q ss_pred ecCCCCc----EEEEEEecCCCcEEEEEeCCCCEEEE
Q 011709 368 FEGHSAA----VLCVQWSPDKSSVFGSSAEDGLLNIW 400 (479)
Q Consensus 368 ~~~h~~~----v~~l~~~p~~~~llas~s~Dg~v~iw 400 (479)
+.+|... |..+.|||...+|| +++.||+|++|
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpWLf-sAGAd~tirlf 732 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPWLF-SAGADGTIRLF 732 (733)
T ss_pred ccCceeecccceEeecccCCCceEE-ecCCCceEEee
Confidence 8999765 89999999999865 88889999998
No 202
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=1.9e-15 Score=139.06 Aligned_cols=223 Identities=19% Similarity=0.276 Sum_probs=152.8
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecCCCcEEEEecCCCcc
Q 011709 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHIT 230 (479)
Q Consensus 152 ~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~dg~i~vwd~~~~~~ 230 (479)
.+.-|..|=.-|.|.+.|....+... ... .-..-....|+|+.|-|.+. .++.+-.+|.+.++|..-...
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sk-lfn--------e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~ 254 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSK-LFN--------EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG 254 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHH-hhh--------hcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc
Confidence 44556677777888888876531111 000 00011113589999999754 666777899999998732111
Q ss_pred ccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCC
Q 011709 231 SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 310 (479)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 310 (479)
. ..+ ................ .......|+..+.--...|+.++|+||| .+||+.+.||.+||||..+
T Consensus 255 ~--t~p--~~~~~k~~~~f~i~t~--------ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt 321 (636)
T KOG2394|consen 255 A--TAP--SYQALKDGDQFAILTS--------KSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDT 321 (636)
T ss_pred C--CCC--cccccCCCCeeEEeee--------eccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccH
Confidence 0 000 0000011110000000 0001113444444445689999999998 7999999999999999998
Q ss_pred CCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecC-------
Q 011709 311 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD------- 383 (479)
Q Consensus 311 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~------- 383 (479)
.. ++..++.--+...|++|+| |++||++|+.|--|.||.+.. .+.+..-++|..+|+.|+|+|-
T Consensus 322 ~e--Llg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~e------rRVVARGqGHkSWVs~VaFDpytt~~ee~ 392 (636)
T KOG2394|consen 322 QE--LLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEE------RRVVARGQGHKSWVSVVAFDPYTTSTEEW 392 (636)
T ss_pred HH--HHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEecc------ceEEEeccccccceeeEeecccccccccc
Confidence 87 6666666778899999999 999999999999999999988 7888999999999999999830
Q ss_pred ----------------------------------------CCcEEEEEeCCCCEEEEeCCCC
Q 011709 384 ----------------------------------------KSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 384 ----------------------------------------~~~llas~s~Dg~v~iwd~~~~ 405 (479)
-.|-|.+.+.|-.+++||+...
T Consensus 393 ~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 393 NNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred cccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 1345788999999999999873
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.5e-14 Score=138.35 Aligned_cols=266 Identities=18% Similarity=0.234 Sum_probs=178.3
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
..|.-.+++.+++| +++++|+|..||.|.+|.--.... .......+.=|.. .|++++|+++|.+|+||+.
T Consensus 202 ~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~--------~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~ 271 (792)
T KOG1963|consen 202 VHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSD--------DSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGR 271 (792)
T ss_pred hhhcccceeEEecc-ccceEEEeccCCcEEEEecccccc--------ccccceEEEeccc-ccceeEEecCCceEeeccc
Confidence 45777789999999 999999999999999996544111 1233456777776 5999999999999999999
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
.|.+.+|.+.++.. +-+..-.+.|..+.++|++ .+.+.
T Consensus 272 E~VLv~Wq~~T~~k-----------------------------------------qfLPRLgs~I~~i~vS~ds-~~~sl 309 (792)
T KOG1963|consen 272 EGVLVLWQLETGKK-----------------------------------------QFLPRLGSPILHIVVSPDS-DLYSL 309 (792)
T ss_pred ceEEEEEeecCCCc-----------------------------------------ccccccCCeeEEEEEcCCC-CeEEE
Confidence 99999999987543 2233346789999999999 57778
Q ss_pred EecCCeEEEEeCCCCCCC-ceeee--------ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCC--------
Q 011709 297 VGDDSCLILWDARVGTSP-VIKVE--------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN-------- 359 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~-~~~~~--------~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~-------- 359 (479)
...|..|.+-...+.... .+..+ ....+-.+.++++| ..+.++-.+..|.|.+||+-+....
T Consensus 310 ~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~ 388 (792)
T KOG1963|consen 310 VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE 388 (792)
T ss_pred EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEee
Confidence 888999998877554310 11111 11234566788888 6777777888888888887552200
Q ss_pred ----C---------------CCCcee-----------------------------------eecCCCCcEEEEEEecCCC
Q 011709 360 ----G---------------VGSPIN-----------------------------------KFEGHSAAVLCVQWSPDKS 385 (479)
Q Consensus 360 ----~---------------~~~~~~-----------------------------------~~~~h~~~v~~l~~~p~~~ 385 (479)
. .+.-+. ....|...+...++.+..+
T Consensus 389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r 468 (792)
T KOG1963|consen 389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR 468 (792)
T ss_pred cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc
Confidence 0 000000 0124555555555544333
Q ss_pred c-EEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 386 S-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 386 ~-llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
. .++++|.||.++||-+........... ........+-...++++++|+-||.+|+.+-+ ++|-+|+..
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s----~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~------~~Itiwd~~ 538 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKKSS----NWTCKAIGSYHKTPITALCFSQDGSLLAVSFD------DTITIWDYD 538 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcCcc----ceEEeeeeccccCcccchhhcCCCcEEEEecC------CEEEEecCC
Confidence 3 578999999999999966332221111 11122222222344899999999987776654 699999766
Q ss_pred c
Q 011709 465 E 465 (479)
Q Consensus 465 ~ 465 (479)
+
T Consensus 539 ~ 539 (792)
T KOG1963|consen 539 T 539 (792)
T ss_pred C
Confidence 5
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=7.3e-15 Score=143.38 Aligned_cols=213 Identities=14% Similarity=0.144 Sum_probs=139.6
Q ss_pred CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC---CcEEEEecCCCccccccCCcc
Q 011709 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPAT 238 (479)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~ 238 (479)
+.+|.|||.... . ...+..|.. .+....|+|+|+.|+.++.+ ..|.+||+.++....
T Consensus 183 ~~~i~i~d~dg~------------~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------ 242 (429)
T PRK01742 183 PYEVRVADYDGF------------N-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------ 242 (429)
T ss_pred eEEEEEECCCCC------------C-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------
Confidence 468999998765 2 234566665 47899999999999887654 469999997543210
Q ss_pred cccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEE--eCCCCCCCce
Q 011709 239 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW--DARVGTSPVI 316 (479)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~ 316 (479)
+..+.+| ...++|+|+|..++++.+.+|.+.|| |+.++. .
T Consensus 243 --------------------------------l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~ 284 (429)
T PRK01742 243 --------------------------------VASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---P 284 (429)
T ss_pred --------------------------------EecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---e
Confidence 1112233 33679999995444455578876655 665554 3
Q ss_pred eeeccCCCCeEEEEecCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCC
Q 011709 317 KVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 395 (479)
Q Consensus 317 ~~~~~~~~~v~~l~~sp~~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg 395 (479)
..+..+...+.+.+|+| ++..|+.++ .+|...||+++... .....+ .+.. ....|+|+++++ +.++.++
T Consensus 285 ~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~-----~~~~~l-~~~~--~~~~~SpDG~~i-a~~~~~~ 354 (429)
T PRK01742 285 SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASG-----GGASLV-GGRG--YSAQISADGKTL-VMINGDN 354 (429)
T ss_pred EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCC-----CCeEEe-cCCC--CCccCCCCCCEE-EEEcCCC
Confidence 44556777788999999 888666554 57889999876522 222222 3433 467899999975 4555554
Q ss_pred CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 396 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 396 ~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
+.+||+..+.. ..+. .+ ....++.|+|++.+|+.++. ++.+.+|...
T Consensus 355 -i~~~Dl~~g~~-------------~~lt--~~-~~~~~~~~sPdG~~i~~~s~-----~g~~~~l~~~ 401 (429)
T PRK01742 355 -VVKQDLTSGST-------------EVLS--ST-FLDESPSISPNGIMIIYSST-----QGLGKVLQLV 401 (429)
T ss_pred -EEEEECCCCCe-------------EEec--CC-CCCCCceECCCCCEEEEEEc-----CCCceEEEEE
Confidence 66699977411 1111 11 12356789999999999887 6777776543
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.2e-14 Score=127.73 Aligned_cols=256 Identities=14% Similarity=0.173 Sum_probs=165.1
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecCCCc
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKS 219 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~dg~ 219 (479)
-.+.-++|++ .-.-+|++..|-.|++||-... ....++.....-|+|++|-|.+. .|+.|.. +-
T Consensus 99 ~dlr~~aWhq-H~~~fava~nddvVriy~ksst-------------~pt~Lks~sQrnvtclawRPlsaselavgCr-~g 163 (445)
T KOG2139|consen 99 IDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSST-------------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AG 163 (445)
T ss_pred cceeeEeech-hhhhhhhhccCcEEEEeccCCC-------------CCceecchhhcceeEEEeccCCcceeeeeec-ce
Confidence 4677889988 6667889999999999997653 12233333334589999999865 5666654 56
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe-
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG- 298 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~- 298 (479)
|++|............ + ........+....+| ..|+++.|.++| ..+++++
T Consensus 164 IciW~~s~tln~~r~~-------------------------~-~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~ 215 (445)
T KOG2139|consen 164 ICIWSDSRTLNANRNI-------------------------R-MMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASF 215 (445)
T ss_pred eEEEEcCccccccccc-------------------------c-cccccchhheeCCCC-ceeeEEEEcCCC-CEEeeccc
Confidence 9999875321110000 0 000001112333456 689999999999 5677766
Q ss_pred cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEE
Q 011709 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 378 (479)
.|..|.|||..++....+. ....+.+.-+.||| ++.+|++++-|+..++|..... ..... ...-.+.|...
T Consensus 216 gsssi~iWdpdtg~~~pL~--~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~-----wt~er-w~lgsgrvqta 286 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLI--PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQS-----WTKER-WILGSGRVQTA 286 (445)
T ss_pred CcceEEEEcCCCCCccccc--ccCCCceeeEEEcC-CCCEEEEecccceeeeehhccc-----ceecc-eeccCCceeee
Confidence 5678999999998843333 34567789999999 9999999999999999965542 12222 22234589999
Q ss_pred EEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC----CCCC--eeEEEeCCC----CCceeEEEecCCCeeeecC
Q 011709 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT----NYPA--GLFFQHAGH----SPSSSIKFVLRESCLVDNN 448 (479)
Q Consensus 379 ~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~----~~~~--~l~~~~~gh----~~~~~~~~sp~~~~l~~~~ 448 (479)
+|+|+|+.||.+.+. .-++|.+...++......... ..+. ..+....|. ..+.+++|.|.|.+|+..-
T Consensus 287 cWspcGsfLLf~~sg--sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 287 CWSPCGSFLLFACSG--SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eecCCCCEEEEEEcC--CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 999999998877764 456677665444332221100 0000 111222332 2368999999999999876
Q ss_pred CC
Q 011709 449 HG 450 (479)
Q Consensus 449 ~~ 450 (479)
.+
T Consensus 365 Kg 366 (445)
T KOG2139|consen 365 KG 366 (445)
T ss_pred cC
Confidence 54
No 206
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=1.7e-15 Score=146.06 Aligned_cols=242 Identities=17% Similarity=0.243 Sum_probs=162.4
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
....+|.+.|+.++.+. +..++|++|.|..|++|-+.++ .++..+.||++ .|++++|+|-. +
T Consensus 226 As~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~~------------~pvsvLrghtg-avtaiafsP~~----s 287 (1113)
T KOG0644|consen 226 ASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPDG------------APVSVLRGHTG-AVTAIAFSPRA----S 287 (1113)
T ss_pred ccCCCCccccchhccch-hhhhhhhcccCceEEEEecCCC------------chHHHHhcccc-ceeeeccCccc----c
Confidence 34569999999999887 7789999999999999999988 77888999998 59999999965 7
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCC--CCCCCceeecCCCCceEEEEEeeCCC
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG--PSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
.+.||++++||.+-.... ..+...........................+. ...-....+..+...+.-+.++.+-.
T Consensus 288 ss~dgt~~~wd~r~~~~~--y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~ 365 (1113)
T KOG0644|consen 288 SSDDGTCRIWDARLEPRI--YVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLS 365 (1113)
T ss_pred CCCCCceEeccccccccc--cCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccc
Confidence 788999999998721111 11111111111111000000000000000000 00000011112222333333333333
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
.+.+++-.+-.+.+|++.++. +.+.+.+|...+..+.++|++.....+++.||...|||+-. +.++..+.-.
T Consensus 366 ~~~~~ar~~~~~~vwnl~~g~--l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e------g~pik~y~~g 437 (1113)
T KOG0644|consen 366 SIVVTARNDHRLCVWNLYTGQ--LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE------GIPIKHYFIG 437 (1113)
T ss_pred ccceeeeeeeEeeeeecccch--hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeeccc------CCcceeeecc
Confidence 456667778889999999998 78888899999999999999999999999999999999988 6666655433
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
...+...+|+++|.. ++....-|.+.|.....
T Consensus 438 h~kl~d~kFSqdgts-~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 438 HGKLVDGKFSQDGTS-IALSDDHGQLYILGTGQ 469 (1113)
T ss_pred cceeeccccCCCCce-EecCCCCCceEEeccCC
Confidence 456778899999996 44555568888887665
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=1e-13 Score=122.33 Aligned_cols=234 Identities=12% Similarity=0.206 Sum_probs=158.6
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC--C
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD--K 218 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d--g 218 (479)
..++.+.|.. +...|..|+.|| -++|..+.-.. . .-..-.+..|.-+-|+. .++|..+.+ +
T Consensus 6 ~ti~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k-----------~--~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr 68 (391)
T KOG2110|consen 6 PTINFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEK-----------C--FSKDTEGVSIVEMLFSS--SLVAIVSIKQPR 68 (391)
T ss_pred cceeeeeecc-ceeEEEccCCCc-eeEEecCchHH-----------h--hcccCCCeEEEEeeccc--ceeEEEecCCCc
Confidence 3466666766 778999999997 56776654311 0 00011111233444543 344444433 3
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (479)
.+++.+++..... ..+ .....|.++.++.+ .|+.+-
T Consensus 69 ~Lkv~~~Kk~~~I----------------------------------------Ce~-~fpt~IL~VrmNr~---RLvV~L 104 (391)
T KOG2110|consen 69 KLKVVHFKKKTTI----------------------------------------CEI-FFPTSILAVRMNRK---RLVVCL 104 (391)
T ss_pred eEEEEEcccCceE----------------------------------------EEE-ecCCceEEEEEccc---eEEEEE
Confidence 4777777643221 111 13457888888764 356665
Q ss_pred cCCeEEEEeCCCCCCCceeeec---cCCCCeEEEEecCCCCcEEEEEeC--CCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 299 DDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSA--DNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~l~tgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
++. |.|||+++.+ +++++. .+...+.++++++ .+.|+|--+. .|.|.|||..+ .+++..+.+|.+
T Consensus 105 ee~-IyIydI~~Mk--lLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n------l~~v~~I~aH~~ 174 (391)
T KOG2110|consen 105 EES-IYIYDIKDMK--LLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN------LQPVNTINAHKG 174 (391)
T ss_pred ccc-EEEEecccce--eehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc------ceeeeEEEecCC
Confidence 544 9999999988 565554 3555677777776 5667775433 58999999998 689999999999
Q ss_pred cEEEEEEecCCCcEEEEEeCCCC-EEEEeCCCCCccccCCCCCCCCCCeeEEEe-CCCCC--ceeEEEecCCCeeeecCC
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGHSP--SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~-v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~-~gh~~--~~~~~~sp~~~~l~~~~~ 449 (479)
++-+++|+++|. +|||+|..|+ |||+.+..+ +.++.. .|-.. +.+++|+|++++|+++++
T Consensus 175 ~lAalafs~~G~-llATASeKGTVIRVf~v~~G---------------~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 175 PLAALAFSPDGT-LLATASEKGTVIRVFSVPEG---------------QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred ceeEEEECCCCC-EEEEeccCceEEEEEEcCCc---------------cEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 999999999999 6899999886 689999885 223322 23333 789999999999999999
Q ss_pred CccccceeEEEEeeccc
Q 011709 450 GLSYANKKIKIYCHLEA 466 (479)
Q Consensus 450 ~~~~~d~~i~i~~~~~~ 466 (479)
.++|++|.....
T Consensus 239 -----TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 239 -----TETVHIFKLEKV 250 (391)
T ss_pred -----CCeEEEEEeccc
Confidence 999999965443
No 208
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.63 E-value=4e-14 Score=121.20 Aligned_cols=267 Identities=15% Similarity=0.185 Sum_probs=183.6
Q ss_pred eeeEEEecCCCceeEEEecC--CCCc-EEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC
Q 011709 131 VKKHKTIIHPGEVNRIRELP--QNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 207 (479)
Q Consensus 131 ~~~~~~~~h~~~V~~l~~~p--~~~~-~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~ 207 (479)
...++...|. .++.+.|.. .++. .++-+-.+|.|.++............+ +....-... ...++.|++.
T Consensus 61 l~~~q~~dts-~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~------ls~~ki~~~-~~lslD~~~~ 132 (339)
T KOG0280|consen 61 LDTLQCTDTS-TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG------LSSKKISVV-EALSLDISTS 132 (339)
T ss_pred cceeeeeccc-ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc------cchhhhhhe-eeeEEEeecc
Confidence 4456666664 467777764 3444 677778889999998765532211111 100011111 1358899999
Q ss_pred CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 208 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
+..++++..+|.+.+-+.... ..+.++..+.|...+....|+
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~--------------------------------------~le~vq~wk~He~E~Wta~f~ 174 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEM--------------------------------------VLEKVQTWKVHEFEAWTAKFS 174 (339)
T ss_pred CceEEEEcCCCcEEEEeccee--------------------------------------eeeecccccccceeeeeeecc
Confidence 999999999999985544321 112235678899999999999
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceee
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~ 367 (479)
...++++++|++|+.+..||+|....-..+....|...|.++.-+|..+.+|+||+.|-.|++||.|+. ++|+..
T Consensus 175 ~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm-----~kPl~~ 249 (339)
T KOG0280|consen 175 DKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM-----GKPLFK 249 (339)
T ss_pred cCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc-----cCcccc
Confidence 988899999999999999999965532333356899999999999988999999999999999999975 567665
Q ss_pred ecCCCCcEEEEEEecCCCc-EEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeee
Q 011709 368 FEGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLV 445 (479)
Q Consensus 368 ~~~h~~~v~~l~~~p~~~~-llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~ 445 (479)
-. -.+.|..+.++|.-.. +|+++-..| .+|-+.+....+. ...+..+.+|.+ ...-.|......|+
T Consensus 250 ~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~----------~~~~~s~~~hdSl~YG~DWd~~~~~lA 317 (339)
T KOG0280|consen 250 AK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEF----------QIVLPSDKIHDSLCYGGDWDSKDSFLA 317 (339)
T ss_pred Cc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccch----------heeeeccccccceeeccccccccceee
Confidence 44 3488999999997553 344444444 7788877642221 013445556655 66777766667788
Q ss_pred ecCCCccccceeEE-EEeec
Q 011709 446 DNNHGLSYANKKIK-IYCHL 464 (479)
Q Consensus 446 ~~~~~~~~~d~~i~-i~~~~ 464 (479)
+.+. .|+.|+ +|-..
T Consensus 318 TCsF----YDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 318 TCSF----YDKKIRQLWLHI 333 (339)
T ss_pred eeec----cccceeeeeeec
Confidence 7664 377765 77543
No 209
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=5.7e-14 Score=130.47 Aligned_cols=285 Identities=15% Similarity=0.202 Sum_probs=184.0
Q ss_pred ceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeee-eecCCC
Q 011709 130 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFAL-AMCPTE 208 (479)
Q Consensus 130 ~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l-~~s~~~ 208 (479)
.+..++-+.|+..-+.|..+|+..-++|||.....|++||+... ...+.-|.++.+..+ -.+-|-
T Consensus 41 rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL--------------SLKFERhlDae~V~feiLsDD~ 106 (703)
T KOG2321|consen 41 RIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL--------------SLKFERHLDAEVVDFEILSDDY 106 (703)
T ss_pred HHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccc--------------eeeeeecccccceeEEEeccch
Confidence 45577889999999999999966667889999999999999865 234555655433333 223333
Q ss_pred CcEEEecCCCcEEEEecCCCccccccCC--cccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 209 PYVLSGGKDKSVVLWSIQDHITSSATDP--ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 209 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
..++.--.|.+|-+...-..-....... ........+.++...+. ...+.-.+...+..+..+....+.++++..
T Consensus 107 SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gs---g~evYRlNLEqGrfL~P~~~~~~~lN~v~i 183 (703)
T KOG2321|consen 107 SKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGS---GSEVYRLNLEQGRFLNPFETDSGELNVVSI 183 (703)
T ss_pred hhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeec---CcceEEEEccccccccccccccccceeeee
Confidence 3344444566665543321111000000 00001111111111111 122333344555566667667789999999
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCCCCceeee------ccCCC-----CeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE------KAHDA-----DLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~-----~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
++.+ .+|++|+.+|.|-.||.|+.. .+..+ ..|.+ .|+++.|+. +|-.+++|+.+|.|.|||+|.
T Consensus 184 n~~h-gLla~Gt~~g~VEfwDpR~ks--rv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 184 NEEH-GLLACGTEDGVVEFWDPRDKS--RVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred cCcc-ceEEecccCceEEEecchhhh--hheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEccc
Confidence 9988 689999999999999999876 23222 23443 399999998 799999999999999999998
Q ss_pred CCCCCCCCceeee-cCCCCcEEEEEEecCCCc-EEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCce
Q 011709 356 LTSNGVGSPINKF-EGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSS 433 (479)
Q Consensus 356 ~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~-llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~ 433 (479)
.+|+..- .+..-+|..+.|.+.+.. .++|. ....++|||-..+ ... ....-..++.
T Consensus 260 ------~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G-k~~--------------asiEpt~~lN 317 (703)
T KOG2321|consen 260 ------SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG-KPM--------------ASIEPTSDLN 317 (703)
T ss_pred ------CCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccC-Cce--------------eeccccCCcC
Confidence 4555433 334458999999776322 34344 4678999998874 221 1122224489
Q ss_pred eEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 434 SIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 434 ~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
++++-|++.+++.+.. ++.+..|-
T Consensus 318 D~C~~p~sGm~f~Ane-----~~~m~~yy 341 (703)
T KOG2321|consen 318 DFCFVPGSGMFFTANE-----SSKMHTYY 341 (703)
T ss_pred ceeeecCCceEEEecC-----CCcceeEE
Confidence 9999999999999988 66666663
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=7.8e-14 Score=123.93 Aligned_cols=212 Identities=17% Similarity=0.273 Sum_probs=154.6
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecCC-
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKD- 217 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~d- 217 (479)
.+.|-.++.. ...|.+|-.+|.+.+|....+... ..+...+..+.+ +..|.-++... ++++|+..
T Consensus 105 ~~~I~gl~~~---dg~Litc~~sG~l~~~~~k~~d~h--------ss~l~~la~g~g--~~~~r~~~~~p~Iva~GGke~ 171 (412)
T KOG3881|consen 105 TKSIKGLKLA---DGTLITCVSSGNLQVRHDKSGDLH--------SSKLIKLATGPG--LYDVRQTDTDPYIVATGGKEN 171 (412)
T ss_pred cccccchhhc---CCEEEEEecCCcEEEEeccCCccc--------cccceeeecCCc--eeeeccCCCCCceEecCchhc
Confidence 3455555442 237888899999999999866211 133344444443 56777776655 55669988
Q ss_pred -CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC--CCcEE
Q 011709 218 -KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SAQEF 294 (479)
Q Consensus 218 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l 294 (479)
..+.+||++....... . .+..... ..+. -.-+++++.|-+. . +.|
T Consensus 172 ~n~lkiwdle~~~qiw~--a----------------KNvpnD~------------L~Lr-VPvW~tdi~Fl~g~~~-~~f 219 (412)
T KOG3881|consen 172 INELKIWDLEQSKQIWS--A----------------KNVPNDR------------LGLR-VPVWITDIRFLEGSPN-YKF 219 (412)
T ss_pred ccceeeeecccceeeee--c----------------cCCCCcc------------ccce-eeeeeccceecCCCCC-ceE
Confidence 8899999986522110 0 0000000 0000 1235678888775 4 689
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceee-ecCCCC
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSA 373 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~ 373 (479)
++++.-+.|++||.+.++.|+ ..+.-.+.+++++...| ++++|++|..-|.+..||+|. +..+.. +.+-.+
T Consensus 220 at~T~~hqvR~YDt~~qRRPV-~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~------~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 220 ATITRYHQVRLYDTRHQRRPV-AQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRG------GKLLGCGLKGITG 291 (412)
T ss_pred EEEecceeEEEecCcccCcce-eEeccccCcceeeeecC-CCcEEEEecccchhheecccC------ceeeccccCCccC
Confidence 999999999999999888764 44556788999999999 999999999999999999998 555544 889999
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
.|.+|..+|..+ ++|++|-|+.|||+|+.+.
T Consensus 292 sirsih~hp~~~-~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 292 SIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred CcceEEEcCCCc-eEEeeccceeEEEeecccc
Confidence 999999999999 6899999999999999983
No 211
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.61 E-value=4.2e-13 Score=126.94 Aligned_cols=249 Identities=10% Similarity=0.145 Sum_probs=148.0
Q ss_pred EEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec-CCCcEEEEecCCC-cccc
Q 011709 155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDH-ITSS 232 (479)
Q Consensus 155 ~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s-~dg~i~vwd~~~~-~~~~ 232 (479)
++++...++.|++||+.+.. .......+.. .+ ....++++|++++|++++ .++.|.+|+++.. ....
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g---------~l~~~~~~~~-~~-~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~ 72 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEG---------ALTLLQVVDV-PG-QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTF 72 (330)
T ss_pred EEEEcCCCCCEEEEEECCCC---------ceeeeeEEec-CC-CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEE
Confidence 34555778999999996431 1123333432 22 256899999999887654 5889999998621 1100
Q ss_pred ccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCC
Q 011709 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT 312 (479)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 312 (479)
+.... .......++|+|++..++++...++.|.+||+.+..
T Consensus 73 --------------------------------------~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 73 --------------------------------------AAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred --------------------------------------eeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 00011 122356899999995444444468999999997432
Q ss_pred C--CceeeeccCCCCeEEEEecCCCCcEEEEEe-CCCcEEEEecCCCCCCCC-CCceeeecCCCCcEEEEEEecCCCcEE
Q 011709 313 S--PVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGV-GSPINKFEGHSAAVLCVQWSPDKSSVF 388 (479)
Q Consensus 313 ~--~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs-~dg~I~iwd~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~ll 388 (479)
. ..+... .+.....+++++| +++++++++ .++.|.+||++....-.. ........ .......++|+|++++++
T Consensus 114 ~~~~~~~~~-~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~ly 190 (330)
T PRK11028 114 IPVAPIQII-EGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAY 190 (330)
T ss_pred CCCCceeec-cCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEE
Confidence 1 112222 2334567889999 777775544 569999999976210000 00001111 123467899999999876
Q ss_pred EEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 389 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 389 as~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
++...++.|.+||+................|.. ..+......+.++|++++++++..+ +++|.+|+..
T Consensus 191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~i~~~pdg~~lyv~~~~----~~~I~v~~i~ 258 (330)
T PRK11028 191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD----FSDTRWAADIHITPDGRHLYACDRT----ASLISVFSVS 258 (330)
T ss_pred EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc----CCCCccceeEEECCCCCEEEEecCC----CCeEEEEEEe
Confidence 666669999999997421111000000000000 0011123578999999999988765 8899999763
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.5e-12 Score=114.78 Aligned_cols=215 Identities=13% Similarity=0.201 Sum_probs=138.1
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCC--CCcEEEeccCCCceeeeeecCCCCcEEEec-C
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNS--RPDLILTGHQDNAEFALAMCPTEPYVLSGG-K 216 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s-~ 216 (479)
...|+|++|-|.....||.|... -|.||................. -.+....|| ..|++|.|++||..|++++ .
T Consensus 140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh--~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH--NPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC--ceeeEEEEcCCCCEEeecccC
Confidence 35799999999888889998876 5999988765433221111111 223334455 3699999999999999888 4
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
|..|.|||..++..... . .-..+.+.-+.|+|++ .+|++
T Consensus 217 sssi~iWdpdtg~~~pL--------------------------------------~--~~glgg~slLkwSPdg-d~lfa 255 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPL--------------------------------------I--PKGLGGFSLLKWSPDG-DVLFA 255 (445)
T ss_pred cceEEEEcCCCCCcccc--------------------------------------c--ccCCCceeeEEEcCCC-CEEEE
Confidence 67899999987654211 1 1134568899999999 67888
Q ss_pred EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEE-EEEeCCCcEEEEecCCCCCCCCC---------Ccee
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVG---------SPIN 366 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l-~tgs~dg~I~iwd~~~~~~~~~~---------~~~~ 366 (479)
++-|+..++|....... ..... -..+.|...+|+| .|.+| ++.+.. -++|.+....+.... .++.
T Consensus 256 At~davfrlw~e~q~wt-~erw~-lgsgrvqtacWsp-cGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~llia 330 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWT-KERWI-LGSGRVQTACWSP-CGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIA 330 (445)
T ss_pred ecccceeeeehhcccce-eccee-ccCCceeeeeecC-CCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeec
Confidence 89999999996544321 22222 2345899999999 66554 444443 344554432211100 1111
Q ss_pred eec-----C----CCCcEEEEEEecCCCcEEEEEeCC--------CCEEEEeCCC
Q 011709 367 KFE-----G----HSAAVLCVQWSPDKSSVFGSSAED--------GLLNIWDYEK 404 (479)
Q Consensus 367 ~~~-----~----h~~~v~~l~~~p~~~~llas~s~D--------g~v~iwd~~~ 404 (479)
.+. . -.+++.+++|+|.|.+ ||+.-.. +.|.+||.+.
T Consensus 331 DL~e~ti~ag~~l~cgeaq~lawDpsGey-Lav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 331 DLQEVTICAGQRLCCGEAQCLAWDPSGEY-LAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred cchhhhhhcCcccccCccceeeECCCCCE-EEEEEcCCchhhhhhhhhhhhcccc
Confidence 111 1 1467899999999997 4454332 3467788776
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=2.8e-14 Score=131.54 Aligned_cols=172 Identities=14% Similarity=0.214 Sum_probs=132.0
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccc----------------cCCCCCCCCcEEEeccCCCceeeee
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA----------------VLGATNSRPDLILTGHQDNAEFALA 203 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~----------------~~~~~~~~~~~~~~~h~~~~v~~l~ 203 (479)
...|+|++|.|.+..++..+-.+|.+++||..-...... -.......++..+.--.+ .|+..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g-~in~f~ 297 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEG-SINEFA 297 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccc-ccccee
Confidence 378999999998888888999999999998743211100 001111133344444444 588999
Q ss_pred ecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEE
Q 011709 204 MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (479)
Q Consensus 204 ~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (479)
|+|||++||+.+.||.+||||..+.... ..++..-+...|
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLl----------------------------------------g~mkSYFGGLLC 337 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELL----------------------------------------GVMKSYFGGLLC 337 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHH----------------------------------------HHHHhhccceEE
Confidence 9999999999999999999999754321 233444567899
Q ss_pred EEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCC-----------------------------
Q 011709 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL----------------------------- 334 (479)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~----------------------------- 334 (479)
++|+||| .++++|++|..|.||.+..++ ++..-.+|.+.|+.|+|+|.
T Consensus 338 vcWSPDG-KyIvtGGEDDLVtVwSf~erR--VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~ 414 (636)
T KOG2394|consen 338 VCWSPDG-KYIVTGGEDDLVTVWSFEERR--VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRAN 414 (636)
T ss_pred EEEcCCc-cEEEecCCcceEEEEEeccce--EEEeccccccceeeEeecccccccccccccccccccccchhcccccccC
Confidence 9999999 799999999999999999888 78787899999999999841
Q ss_pred ------------------CCcEEEEEeCCCcEEEEecCC
Q 011709 335 ------------------DDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 335 ------------------~~~~l~tgs~dg~I~iwd~~~ 355 (479)
....|.+.+.|..+.+||+..
T Consensus 415 ~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 415 GTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred CCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence 113678889999999999864
No 214
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=6.3e-14 Score=122.44 Aligned_cols=301 Identities=15% Similarity=0.205 Sum_probs=182.0
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCC-----------CceeeeeecCCC
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-----------NAEFALAMCPTE 208 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~~v~~l~~s~~~ 208 (479)
.+-|.+|.|.. .|.+||||..+|.|.++.-...... .-.....+..|.. ..|..+.|.+++
T Consensus 25 adiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~-------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 25 ADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKG-------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred hcceeeEEeec-ccceEeecCCCCeEEEeeccccccc-------ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC
Confidence 45678899988 8999999999999999976544210 1112223333321 247899999886
Q ss_pred C--cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee-cCCCCceEEEE
Q 011709 209 P--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVT 285 (479)
Q Consensus 209 ~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~ 285 (479)
+ .++..+.|.+|++|.+..................+....+........ -......|++.+ .+|+--|+++.
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~-----~~~vea~prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRH-----DLEVEASPRRVYANAHTYHINSIS 171 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccc-----cceeeeeeeeeccccceeEeeeee
Confidence 5 566667799999999976543321100000001111100000000000 000111233333 35888899999
Q ss_pred EeeCCCcEEEEEecCCeEEEEeCCCCCCCc-eeeeccC-----CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCC-
Q 011709 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAH-----DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS- 358 (479)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~-----~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~- 358 (479)
++.+. ..+++ .+|=.|.+|.+.-..... +--.+.+ ..-|++..|+|...+.|+-.++.|+|++-|+|...-
T Consensus 172 ~NsD~-Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC 249 (433)
T KOG1354|consen 172 VNSDK-ETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC 249 (433)
T ss_pred ecCcc-ceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh
Confidence 99988 44555 477889999987543211 1111222 245889999998889999999999999999995210
Q ss_pred ---------CCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCee--EEEeC
Q 011709 359 ---------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL--FFQHA 427 (479)
Q Consensus 359 ---------~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l--~~~~~ 427 (479)
...+....-+..--..|..+.|+++|+++| +-. =-+|+|||+.+..++......+....+.| ++...
T Consensus 250 d~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 250 DAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred cchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence 000001111122234688999999999765 443 26899999988665554433322111222 22333
Q ss_pred CCCCceeEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 428 GHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 428 gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
.--+...++|+-++.++++|+. .+.+++|+
T Consensus 328 ~IfdKFec~~sg~~~~v~TGsy-----~n~frvf~ 357 (433)
T KOG1354|consen 328 AIFDKFECSWSGNDSYVMTGSY-----NNVFRVFN 357 (433)
T ss_pred chhheeEEEEcCCcceEecccc-----cceEEEec
Confidence 3334578999999999999999 88889987
No 215
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.59 E-value=2.9e-14 Score=131.26 Aligned_cols=182 Identities=16% Similarity=0.246 Sum_probs=134.8
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
-.|.++|.+-+|+| +|.-|+|++.||.|++|.-.... ..++... ...|+|++|.|+.+.++-|-
T Consensus 101 ~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrsGML-------------RStl~Q~-~~~v~c~~W~p~S~~vl~c~- 164 (737)
T KOG1524|consen 101 SAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRSGML-------------RSTVVQN-EESIRCARWAPNSNSIVFCQ- 164 (737)
T ss_pred hhhhhhhhhcccCC-CCceeeeecCCceEEEEeccchH-------------HHHHhhc-CceeEEEEECCCCCceEEec-
Confidence 47999999999999 88899999999999999976541 1112222 24699999999977555544
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
.+.+.+=-+... ..+...+.|.+-|.++.|++.. .++++
T Consensus 165 g~h~~IKpL~~n----------------------------------------~k~i~WkAHDGiiL~~~W~~~s-~lI~s 203 (737)
T KOG1524|consen 165 GGHISIKPLAAN----------------------------------------SKIIRWRAHDGLVLSLSWSTQS-NIIAS 203 (737)
T ss_pred CCeEEEeecccc----------------------------------------cceeEEeccCcEEEEeecCccc-cceee
Confidence 244555433211 1124567899999999999998 79999
Q ss_pred EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEE
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 376 (479)
|++|-..++||-.... +.....|..+|++++|+| + ..++.||. .+.|+ -....+.|.
T Consensus 204 gGED~kfKvWD~~G~~---Lf~S~~~ey~ITSva~np-d-~~~~v~S~-nt~R~-----------------~~p~~GSif 260 (737)
T KOG1524|consen 204 GGEDFRFKIWDAQGAN---LFTSAAEEYAITSVAFNP-E-KDYLLWSY-NTARF-----------------SSPRVGSIF 260 (737)
T ss_pred cCCceeEEeecccCcc---cccCChhccceeeeeecc-c-cceeeeee-eeeee-----------------cCCCccceE
Confidence 9999999999976433 566678999999999999 6 66666653 23331 123457899
Q ss_pred EEEEecCCCcEEEEEeCCCCEEE
Q 011709 377 CVQWSPDKSSVFGSSAEDGLLNI 399 (479)
Q Consensus 377 ~l~~~p~~~~llas~s~Dg~v~i 399 (479)
.++|++||.. ++.|...|.+.+
T Consensus 261 nlsWS~DGTQ-~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 261 NLSWSADGTQ-ATCGTSTGQLIV 282 (737)
T ss_pred EEEEcCCCce-eeccccCceEEE
Confidence 9999999995 677777887655
No 216
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=9.2e-13 Score=129.07 Aligned_cols=205 Identities=12% Similarity=0.114 Sum_probs=137.4
Q ss_pred CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC---CCcEEEEecCCCccccccCCccc
Q 011709 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQDHITSSATDPATA 239 (479)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~ 239 (479)
..|.++|.... ....+..|.. .+.+.+|+|+|+.|+..+. +..|.+||+.++..
T Consensus 182 ~~l~~~d~dg~-------------~~~~lt~~~~-~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------- 238 (435)
T PRK05137 182 KRLAIMDQDGA-------------NVRYLTDGSS-LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------- 238 (435)
T ss_pred eEEEEECCCCC-------------CcEEEecCCC-CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---------
Confidence 37888888654 2234556665 5889999999998887653 46899999975432
Q ss_pred ccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCe--EEEEeCCCCCCCcee
Q 011709 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIK 317 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~ 317 (479)
..+..+.+.+....|+|+|..++++.+.++. |.+||+.++. ..
T Consensus 239 --------------------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~ 283 (435)
T PRK05137 239 --------------------------------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---TT 283 (435)
T ss_pred --------------------------------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---eE
Confidence 2233345567788999999666667777665 7777888776 34
Q ss_pred eeccCCCCeEEEEecCCCCcEEEEEeC-CC--cEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC
Q 011709 318 VEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394 (479)
Q Consensus 318 ~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D 394 (479)
.+..+.......+|+| ++..|+..+. +| .|+++|+.. .....+..+...+....|+|+|+.++++....
T Consensus 284 ~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g-------~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~ 355 (435)
T PRK05137 284 RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADG-------SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG 355 (435)
T ss_pred EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCC-------CCeEEeecCCCcccCeEECCCCCEEEEEEcCC
Confidence 4555666677899999 8888877664 33 577888764 33344444455677789999999765444333
Q ss_pred --CCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 395 --GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 395 --g~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
..|.+||+.... ..+ +.. +. .+....|+|||+.|+....
T Consensus 356 ~~~~i~~~d~~~~~-------------~~~-lt~-~~-~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 356 GQFSIGVMKPDGSG-------------ERI-LTS-GF-LVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CceEEEEEECCCCc-------------eEe-ccC-CC-CCCCCeECCCCCEEEEEEc
Confidence 357788875421 111 111 22 3578899999998877554
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3.4e-12 Score=124.34 Aligned_cols=200 Identities=13% Similarity=0.117 Sum_probs=124.3
Q ss_pred EecCCCceeEEEecCCCCcEEEEEe---CCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHT---DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
...+.+.+...+|+| +++.||..+ .+..|++||+.++.. +.+..+.++ +....|+|||+.|+
T Consensus 194 lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~----------~~l~~~~~~----~~~~~~SPDG~~La 258 (429)
T PRK03629 194 VHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV----------RQVASFPRH----NGAPAFSPDGSKLA 258 (429)
T ss_pred eecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCe----------EEccCCCCC----cCCeEECCCCCEEE
Confidence 345667899999999 677777544 245799999987621 111112222 34689999999887
Q ss_pred Ee-cCCC--cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC
Q 011709 213 SG-GKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (479)
Q Consensus 213 s~-s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (479)
.. +.+| .|.+||+.++.. ..+..+...+....|+|+
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~-----------------------------------------~~lt~~~~~~~~~~wSPD 297 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQI-----------------------------------------RQVTDGRSNNTEPTWFPD 297 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCE-----------------------------------------EEccCCCCCcCceEECCC
Confidence 54 4455 488888865422 122223345678899999
Q ss_pred CCcEEEEEecCCeEEEE--eCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC---CcEEEEecCCCCCCCCCCc
Q 011709 290 SAQEFCSVGDDSCLILW--DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGSP 364 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~ 364 (479)
|..++++...++...+| |+.++. ...+..+........|+| ++++|+..+.+ ..|.+||+.. +.
T Consensus 298 G~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~------g~- 366 (429)
T PRK03629 298 SQNLAYTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLAT------GG- 366 (429)
T ss_pred CCEEEEEeCCCCCceEEEEECCCCC---eEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCC------CC-
Confidence 95444444444554555 666554 223333444566789999 88888776553 3588899876 33
Q ss_pred eeeecCCCCcEEEEEEecCCCcEEEEEeCCCC---EEEEeCCC
Q 011709 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL---LNIWDYEK 404 (479)
Q Consensus 365 ~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~---v~iwd~~~ 404 (479)
...+... .......|+|+|+.++ .++.++. +.++++..
T Consensus 367 ~~~Lt~~-~~~~~p~~SpDG~~i~-~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 367 VQVLTDT-FLDETPSIAPNGTMVI-YSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred eEEeCCC-CCCCCceECCCCCEEE-EEEcCCCceEEEEEECCC
Confidence 2333321 2234678999999754 5555553 66777643
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.56 E-value=1.1e-13 Score=130.57 Aligned_cols=239 Identities=17% Similarity=0.231 Sum_probs=156.8
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
...+|.+.|+|++|+. +|..+|+|+.|..|.||+-.-.. ..-..|.+ .|.|+.|+|-...|+||
T Consensus 48 tLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG--------------~LkYSH~D-~IQCMsFNP~~h~LasC 111 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEG--------------ILKYSHND-AIQCMSFNPITHQLASC 111 (1081)
T ss_pred ccccccceEEEEEEcc-CCceeccCCCceeEEEecccccc--------------eeeeccCC-eeeEeecCchHHHhhhc
Confidence 4458999999999999 99999999999999999865331 01123444 46777777776667766
Q ss_pred cCCCcEEEEecCCCccccccCCccc--ccCCCCCceeecCCCCCCCCCCCCCCC--CCCCceeecCCCCceEEEEEeeCC
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATA--KSAGSSGSIIKQSPKPGDGNDKAADGP--SVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
+-. ..-+|................ .+...++.++..+.. ++.+.+.+.. ..-.+...-|.+.+|.+++|+|..
T Consensus 112 sLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~--nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 112 SLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMF--NGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred chh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEecc--CceEEeecCCCCcceEEeCCCCCCCCceEEEecCCC
Confidence 632 345665543322111111111 111122222222222 2222222211 111122223477899999999863
Q ss_pred C----cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee
Q 011709 291 A----QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 291 ~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
. .+++......++.+|.+.... +.....-.-...|+.+.| +|.|++.|+.|+.+++|-.. |-.+-
T Consensus 189 g~G~~di~aV~DW~qTLSFy~LsG~~---Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~-------GvrLG 257 (1081)
T KOG1538|consen 189 GEGRNDILAVADWGQTLSFYQLSGKQ---IGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTRD-------GVRLG 257 (1081)
T ss_pred CCCccceEEEEeccceeEEEEeccee---ecccccCCCCchhheecc-CCcEEEEccCCCceEEEeec-------CeEEe
Confidence 2 367777788888888776433 332334455667899999 99999999999999999755 56677
Q ss_pred eecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 367 ~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++.....+|.+++..|++++ ++.|..||+|..|++-.
T Consensus 258 Tvg~~D~WIWtV~~~PNsQ~-v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 258 TVGEQDSWIWTVQAKPNSQY-VVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eccccceeEEEEEEccCCce-EEEEEccCeeehhhhHH
Confidence 77767889999999999996 67999999999999765
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=3.3e-13 Score=115.94 Aligned_cols=156 Identities=21% Similarity=0.346 Sum_probs=108.6
Q ss_pred EEEEEeeCCCcEEEEEec---------CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEE--EeCCCcEEE
Q 011709 282 EDVTFCPSSAQEFCSVGD---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT--GSADNSVRM 350 (479)
Q Consensus 282 ~~l~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~t--gs~dg~I~i 350 (479)
..+.|+++|..+++.... -|...+|-++....+.........++|.+++|+| ++..||+ |..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 467899999666665552 2456677765544333333223456799999999 7777654 445789999
Q ss_pred EecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeC---CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeC
Q 011709 351 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 427 (479)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~---Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 427 (479)
||++ +.++..+. ...++.+.|+|+|+++ +.++. .|.|.+||++.. ..+ ...
T Consensus 88 yd~~-------~~~i~~~~--~~~~n~i~wsP~G~~l-~~~g~~n~~G~l~~wd~~~~---------------~~i-~~~ 141 (194)
T PF08662_consen 88 YDVK-------GKKIFSFG--TQPRNTISWSPDGRFL-VLAGFGNLNGDLEFWDVRKK---------------KKI-STF 141 (194)
T ss_pred EcCc-------ccEeEeec--CCCceEEEECCCCCEE-EEEEccCCCcEEEEEECCCC---------------EEe-ecc
Confidence 9997 36777764 4678899999999964 56553 467999999863 222 222
Q ss_pred CCCCceeEEEecCCCeeeecCCC-ccccceeEEEEeec
Q 011709 428 GHSPSSSIKFVLRESCLVDNNHG-LSYANKKIKIYCHL 464 (479)
Q Consensus 428 gh~~~~~~~~sp~~~~l~~~~~~-~~~~d~~i~i~~~~ 464 (479)
.|..++.++|+|+|++|+++... ..-.|+.++||...
T Consensus 142 ~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 142 EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 34557999999999999998652 12347889999654
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=6.7e-12 Score=123.00 Aligned_cols=203 Identities=15% Similarity=0.142 Sum_probs=131.9
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeC---CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCc
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~ 210 (479)
.+...|.+.+...+|+| +++.||..+. +..|++||+.++. . ..+..+.+ .+.+.+|+|+|+.
T Consensus 195 ~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~------------~-~~l~~~~g-~~~~~~~SPDG~~ 259 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQ------------R-ELVGNFPG-MTFAPRFSPDGRK 259 (435)
T ss_pred EEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCc------------E-EEeecCCC-cccCcEECCCCCE
Confidence 34457788999999999 6777777653 4689999998762 1 23344443 4678999999987
Q ss_pred EE-EecCCCc--EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 211 VL-SGGKDKS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 211 l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
|+ +.+.++. |.+||+.++.. ..+..+........|+
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-----------------------------------------~~Lt~~~~~~~~~~~s 298 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-----------------------------------------TRLTDSPAIDTSPSYS 298 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-----------------------------------------EEccCCCCccCceeEc
Confidence 65 5556665 66667764322 2233344456678999
Q ss_pred eCCCcEEEEEecCC--eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC---CcEEEEecCCCCCCCCC
Q 011709 288 PSSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVG 362 (479)
Q Consensus 288 ~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d---g~I~iwd~~~~~~~~~~ 362 (479)
|+|..++++...+| .|.++|+..+. ...+..+...+....|+| ++++|+..+.+ ..|.+||+..
T Consensus 299 pDG~~i~f~s~~~g~~~Iy~~d~~g~~---~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~------- 367 (435)
T PRK05137 299 PDGSQIVFESDRSGSPQLYVMNADGSN---PRRISFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDG------- 367 (435)
T ss_pred CCCCEEEEEECCCCCCeEEEEECCCCC---eEEeecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCC-------
Confidence 99954444443444 68888887665 233333455677789999 88888876654 3578888754
Q ss_pred CceeeecCCCCcEEEEEEecCCCcEEEEEeCCC-----CEEEEeCCC
Q 011709 363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEK 404 (479)
Q Consensus 363 ~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg-----~v~iwd~~~ 404 (479)
.....+. ....+....|+|+|+.|+.++...+ .+.++|+..
T Consensus 368 ~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 368 SGERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CceEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 2223332 2234678899999997655554332 467777754
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.7e-12 Score=125.13 Aligned_cols=205 Identities=9% Similarity=0.104 Sum_probs=131.0
Q ss_pred CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec---CCCcEEEEecCCCccccccCCccc
Q 011709 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG---KDKSVVLWSIQDHITSSATDPATA 239 (479)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~ 239 (479)
..|.+||.... .. ..+..+.. .+...+|+|||+.|+..+ .+..|.+|++.++...
T Consensus 179 ~~l~~~d~dg~------------~~-~~lt~~~~-~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-------- 236 (429)
T PRK03629 179 YELRVSDYDGY------------NQ-FVVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-------- 236 (429)
T ss_pred eeEEEEcCCCC------------CC-EEeecCCC-ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE--------
Confidence 37899998765 11 22333443 478999999999888654 2457899998654321
Q ss_pred ccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC--eEEEEeCCCCCCCcee
Q 011709 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIK 317 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 317 (479)
.+......+..+.|+|+|..++++.+.+| .|.+||+.++. . .
T Consensus 237 ---------------------------------~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~--~-~ 280 (429)
T PRK03629 237 ---------------------------------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--I-R 280 (429)
T ss_pred ---------------------------------EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC--E-E
Confidence 11112223446799999965555555555 58899998876 3 3
Q ss_pred eeccCCCCeEEEEecCCCCcEEEEEeCC-CcEEEE--ecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC
Q 011709 318 VEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMF--DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394 (479)
Q Consensus 318 ~~~~~~~~v~~l~~sp~~~~~l~tgs~d-g~I~iw--d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D 394 (479)
.+..+...+....|+| +++.|+..+.+ +...|| |+.. + ....+..+........|+|+|++++.++..+
T Consensus 281 ~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~------g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 281 QVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNING------G-APQRITWEGSQNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred EccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCC------C-CeEEeecCCCCccCEEECCCCCEEEEEEccC
Confidence 3444556778899999 88888766654 555555 5543 2 2334444445566789999999765444443
Q ss_pred --CCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 395 --GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 395 --g~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
..|.+||+..+.. ..+. .+ .......|+|||+.|+.++.
T Consensus 353 g~~~I~~~dl~~g~~-------------~~Lt--~~-~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 353 GQQHIAKQDLATGGV-------------QVLT--DT-FLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred CCceEEEEECCCCCe-------------EEeC--CC-CCCCCceECCCCCEEEEEEc
Confidence 3588899876311 1111 11 12346789999999988876
No 222
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=5.1e-13 Score=130.38 Aligned_cols=275 Identities=13% Similarity=0.144 Sum_probs=174.6
Q ss_pred EecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC---cEEEecCCCcEEEE
Q 011709 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP---YVLSGGKDKSVVLW 223 (479)
Q Consensus 147 ~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~---~l~s~s~dg~i~vw 223 (479)
.|++ +...++....+ .|.||...++ .++..+.+|.. .+..+.+.|... ++++++.||.|++|
T Consensus 23 vfSn-D~k~l~~~~~~-~V~VyS~~Tg------------~~i~~l~~~~a-~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 23 VFSN-DAKFLFLCTGN-FVKVYSTATG------------ECITSLEDHTA-PLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred cccc-CCcEEEEeeCC-EEEEEecchH------------hhhhhcccccC-ccceeeecCCCccceEEEEEecCccEEEe
Confidence 4666 66666666554 8999999998 56668899997 478998888643 67899999999999
Q ss_pred ecCCCccccccCCccc----cc----CCCCCceeecCCC---------CCCCCCCCCC--CCCCCCceeecCCCCceEEE
Q 011709 224 SIQDHITSSATDPATA----KS----AGSSGSIIKQSPK---------PGDGNDKAAD--GPSVGPRGIYNGHEDTVEDV 284 (479)
Q Consensus 224 d~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~---------~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~l 284 (479)
|...+.....+..... .. ...+......... .......-.. .........+..|.. -..+
T Consensus 88 d~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I 166 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSI 166 (792)
T ss_pred cCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccE
Confidence 9987754332221100 00 0000000000000 0000000000 000011111222322 3567
Q ss_pred EEeeCCCcEEEEEecCCeEEEEeCCCCCCCc--eeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCC
Q 011709 285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG 362 (479)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~ 362 (479)
.+++.+ .+ .....+..+.+|+........ ...-..|.-.+++.+++| .++++|+|..||.|.+|.--..+ ...
T Consensus 167 ~~~~~g-e~-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~--~~~ 241 (792)
T KOG1963|consen 167 VDNNSG-EF-KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSS--DDS 241 (792)
T ss_pred EEcCCc-eE-EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccc--ccc
Confidence 777777 43 444455678888887744111 111235777799999999 99999999999999999643311 113
Q ss_pred CceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCC
Q 011709 363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRES 442 (479)
Q Consensus 363 ~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~ 442 (479)
.....+..|...|++++|+++|.+|+ |||..|.+.+|.+.++++...+ .--..+..+.++||+.
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~~kqfLP---------------RLgs~I~~i~vS~ds~ 305 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLETGKKQFLP---------------RLGSPILHIVVSPDSD 305 (792)
T ss_pred ccceEEEecccccceeEEecCCceEe-ecccceEEEEEeecCCCccccc---------------ccCCeeEEEEEcCCCC
Confidence 45667888999999999999999855 9999999999999996533322 1124578999999988
Q ss_pred eeeecCCCccccceeEEEEee
Q 011709 443 CLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 443 ~l~~~~~~~~~~d~~i~i~~~ 463 (479)
..+..-. |+.|.+-..
T Consensus 306 ~~sl~~~-----DNqI~li~~ 321 (792)
T KOG1963|consen 306 LYSLVLE-----DNQIHLIKA 321 (792)
T ss_pred eEEEEec-----CceEEEEec
Confidence 7766666 778887754
No 223
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=1.6e-11 Score=108.69 Aligned_cols=195 Identities=14% Similarity=0.208 Sum_probs=140.1
Q ss_pred eeEEEecCCCCcEEEEEeCCC--cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 143 VNRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
|--+-|+. .++|..+.+. .+++.++... ..+..+.-.+ .|.++.++. ++|+++-.+. |
T Consensus 49 IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~------------~~ICe~~fpt--~IL~VrmNr--~RLvV~Lee~-I 108 (391)
T KOG2110|consen 49 IVEMLFSS---SLVAIVSIKQPRKLKVVHFKKK------------TTICEIFFPT--SILAVRMNR--KRLVVCLEES-I 108 (391)
T ss_pred EEEeeccc---ceeEEEecCCCceEEEEEcccC------------ceEEEEecCC--ceEEEEEcc--ceEEEEEccc-E
Confidence 44445544 3666655543 4888888766 2333333333 377888764 4577777554 9
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE--Ee
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS--VG 298 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s--~~ 298 (479)
.|+|+++....... .....+...+.++.+++.+ .+++- ..
T Consensus 109 yIydI~~MklLhTI-------------------------------------~t~~~n~~gl~AlS~n~~n-~ylAyp~s~ 150 (391)
T KOG2110|consen 109 YIYDIKDMKLLHTI-------------------------------------ETTPPNPKGLCALSPNNAN-CYLAYPGST 150 (391)
T ss_pred EEEecccceeehhh-------------------------------------hccCCCccceEeeccCCCC-ceEEecCCC
Confidence 99999865443211 1222345567777777665 34543 23
Q ss_pred cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCc-EEEEecCCCCCCCCCCceeeecCCC--CcE
Q 011709 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEGHS--AAV 375 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~-I~iwd~~~~~~~~~~~~~~~~~~h~--~~v 375 (479)
..|.|.+||+.+-+ .+..+..|.+.+.+++|++ +|.+|||+|+.|+ |||+.+.+ ++.+.+|+-.. ..|
T Consensus 151 t~GdV~l~d~~nl~--~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~------G~kl~eFRRG~~~~~I 221 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQ--PVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPE------GQKLYEFRRGTYPVSI 221 (391)
T ss_pred CCceEEEEEcccce--eeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCC------ccEeeeeeCCceeeEE
Confidence 46899999999877 6777889999999999999 9999999999986 89999988 78888886433 368
Q ss_pred EEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 376 ~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
.+++|+|++++ |++.|..++|.||.+...
T Consensus 222 ySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 222 YSLSFSPDSQF-LAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEEEECCCCCe-EEEecCCCeEEEEEeccc
Confidence 89999999995 678888899999999874
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.5e-12 Score=127.50 Aligned_cols=217 Identities=11% Similarity=0.086 Sum_probs=136.8
Q ss_pred CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC---CcEEEEecCCCccccccCCccc
Q 011709 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATA 239 (479)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~ 239 (479)
.+|.+||.... ....+..+.. .+.+.+|+|+|+.|+.++.+ ..|.+||+.++..
T Consensus 184 ~~l~i~D~~g~-------------~~~~lt~~~~-~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--------- 240 (433)
T PRK04922 184 YALQVADSDGY-------------NPQTILRSAE-PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--------- 240 (433)
T ss_pred EEEEEECCCCC-------------CceEeecCCC-ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE---------
Confidence 36899998654 1233445554 47899999999988877633 4699999875432
Q ss_pred ccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC--eEEEEeCCCCCCCcee
Q 011709 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIK 317 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 317 (479)
..+........+..|+|+|..++++.+.+| .|.+||+.++. ..
T Consensus 241 --------------------------------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---~~ 285 (433)
T PRK04922 241 --------------------------------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---LT 285 (433)
T ss_pred --------------------------------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---eE
Confidence 112222333457899999966666666666 59999998876 33
Q ss_pred eeccCCCCeEEEEecCCCCcEEEEEeC-CCc--EEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC
Q 011709 318 VEKAHDADLHCVDWNPLDDNLILTGSA-DNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394 (479)
Q Consensus 318 ~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D 394 (479)
.+..+.......+|+| ++..|+.++. +|. |+++|+.. +. ...+..+.......+|+|+|++++++...+
T Consensus 286 ~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~------g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~ 357 (433)
T PRK04922 286 RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASG------GS-AERLTFQGNYNARASVSPDGKKIAMVHGSG 357 (433)
T ss_pred ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC------CC-eEEeecCCCCccCEEECCCCCEEEEEECCC
Confidence 4445555567899999 8888777664 455 55666654 22 233333334455789999999765444433
Q ss_pred C--CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 395 G--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 395 g--~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
+ .|.+||+..+. . ..+ .+ +. ......|+|||+.++..+.. ...+.|.+++.
T Consensus 358 ~~~~I~v~d~~~g~-~------------~~L-t~-~~-~~~~p~~spdG~~i~~~s~~--~g~~~L~~~~~ 410 (433)
T PRK04922 358 GQYRIAVMDLSTGS-V------------RTL-TP-GS-LDESPSFAPNGSMVLYATRE--GGRGVLAAVST 410 (433)
T ss_pred CceeEEEEECCCCC-e------------EEC-CC-CC-CCCCceECCCCCEEEEEEec--CCceEEEEEEC
Confidence 3 68999987631 1 111 11 11 23567899999988776652 01234555544
No 225
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=6.9e-13 Score=113.94 Aligned_cols=112 Identities=22% Similarity=0.443 Sum_probs=85.0
Q ss_pred CCceEEEEEeeCCCcEEEE-EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC---CcEEEEec
Q 011709 278 EDTVEDVTFCPSSAQEFCS-VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDR 353 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d---g~I~iwd~ 353 (479)
.+.|.+++|+|++..+++. |..++.|.+||++. + .+..+ +...++.+.|+| +|++|++|+.+ |.|.+||.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-~--~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-K--KIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-c--EeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEEC
Confidence 4569999999999554333 44577999999973 2 34444 456789999999 99999998754 67999999
Q ss_pred CCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeC-----CCCEEEEeCC
Q 011709 354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-----DGLLNIWDYE 403 (479)
Q Consensus 354 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~-----Dg~v~iwd~~ 403 (479)
+. .+.+.+.. |. .++.++|+|+|++++.+.+. |..++||++.
T Consensus 133 ~~------~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 133 RK------KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CC------CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 97 56776665 33 47899999999986544442 7889999986
No 226
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.52 E-value=1.1e-12 Score=114.92 Aligned_cols=274 Identities=16% Similarity=0.246 Sum_probs=187.3
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
.+..+|.+.|+....-| ...-+.+.+.|.+++||--...... -..+.......++++++.+....|+.
T Consensus 18 ~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~-----------wpsI~~~mP~~~~~~~y~~e~~~L~v 85 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQY-----------WPSIYHYMPSPCSAMEYVSESRRLYV 85 (404)
T ss_pred hhhcCchhhhhhheecc-CCCCeEEccccceeeeEEecccccc-----------CchhhhhCCCCceEeeeeccceEEEE
Confidence 34558888999888888 4456889999999999954433111 00111111135789999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
|-.+|++.-+.+....... ...+.+..|...|..+.|+-.. ..
T Consensus 86 g~~ngtvtefs~sedfnkm------------------------------------~~~r~~~~h~~~v~~~if~~~~-e~ 128 (404)
T KOG1409|consen 86 GQDNGTVTEFALSEDFNKM------------------------------------TFLKDYLAHQARVSAIVFSLTH-EW 128 (404)
T ss_pred EEecceEEEEEhhhhhhhc------------------------------------chhhhhhhhhcceeeEEecCCc-ee
Confidence 9999999988775432211 1112233344444444443332 22
Q ss_pred EEEEecC---------------------------------------CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCC
Q 011709 294 FCSVGDD---------------------------------------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334 (479)
Q Consensus 294 l~s~~~d---------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 334 (479)
+++++.| |.|..-.+.....+++..+.+|.+.+.+++|.|
T Consensus 129 V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~- 207 (404)
T KOG1409|consen 129 VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP- 207 (404)
T ss_pred EEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-
Confidence 3333333 233322222223345677789999999999999
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCcc------
Q 011709 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK------ 408 (479)
Q Consensus 335 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~------ 408 (479)
...+|++|..|-.|.+||+--. .....++.+|...|..+..-+.-.. +.+++.||.|.+||+.....+
T Consensus 208 ~~~~LfSg~~d~~vi~wdigg~-----~g~~~el~gh~~kV~~l~~~~~t~~-l~S~~edg~i~~w~mn~~r~etpewl~ 281 (404)
T KOG1409|consen 208 GQRLLFSGASDHSVIMWDIGGR-----KGTAYELQGHNDKVQALSYAQHTRQ-LISCGEDGGIVVWNMNVKRVETPEWLD 281 (404)
T ss_pred CCcEEEeccccCceEEEeccCC-----cceeeeeccchhhhhhhhhhhhhee-eeeccCCCeEEEEeccceeecCccccc
Confidence 8999999999999999999753 2356678899999999988887774 569999999999999864110
Q ss_pred ------------------------------------------cc-------------------C-CCCCCCCCCeeEEEe
Q 011709 409 ------------------------------------------VE-------------------Q-GPRTTNYPAGLFFQH 426 (479)
Q Consensus 409 ------------------------------------------~~-------------------~-~~~~~~~~~~l~~~~ 426 (479)
.. . ....+..++.|..-|
T Consensus 282 s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~ph 361 (404)
T KOG1409|consen 282 SDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPH 361 (404)
T ss_pred cchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccc
Confidence 00 0 001112345577789
Q ss_pred CCCCCceeEEEecCCCeeeecCCCccccceeEEEEeeccccc
Q 011709 427 AGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEALK 468 (479)
Q Consensus 427 ~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~~ 468 (479)
..|++|+.+.+.-.-..|+++|. |..|+|||...-..
T Consensus 362 ei~tgItamhlqetlglLvTsG~-----~Rvi~iwd~~~v~s 398 (404)
T KOG1409|consen 362 EIKTGITAMHLQETLGLLVTSGT-----DRVIKIWDVRSVCS 398 (404)
T ss_pred ccccceeEEEhhhhccceeecCC-----ceEEEEEechhhhh
Confidence 99999999999999999999999 99999999876543
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3e-12 Score=125.29 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=127.9
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
+...|...+...+|+| +++.||..+.+ ..|++||+.++.. ..+..+.+ ...+..|+|+|+.|
T Consensus 198 ~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~-------------~~l~~~~g-~~~~~~~SpDG~~l 262 (433)
T PRK04922 198 TILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQR-------------ELVASFRG-INGAPSFSPDGRRL 262 (433)
T ss_pred EeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCE-------------EEeccCCC-CccCceECCCCCEE
Confidence 3446777899999999 77777776643 4699999987621 12222332 24578999999876
Q ss_pred E-EecCCC--cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee
Q 011709 212 L-SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 212 ~-s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (479)
+ +.+.+| .|.+||+.++.. ..+..+.......+|+|
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~-----------------------------------------~~lt~~~~~~~~~~~sp 301 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQL-----------------------------------------TRLTNHFGIDTEPTWAP 301 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCe-----------------------------------------EECccCCCCccceEECC
Confidence 5 445555 588888865432 22333444456789999
Q ss_pred CCCcEEEEEecCCe--EEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC---cEEEEecCCCCCCCCCC
Q 011709 289 SSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGS 363 (479)
Q Consensus 289 ~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~ 363 (479)
++..++++...+|. |.++|+.++. .. .+..+.......+|+| ++++|+..+.++ .|.+||+.. +.
T Consensus 302 DG~~l~f~sd~~g~~~iy~~dl~~g~--~~-~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~------g~ 371 (433)
T PRK04922 302 DGKSIYFTSDRGGRPQIYRVAASGGS--AE-RLTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLST------GS 371 (433)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCC--eE-EeecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCC------CC
Confidence 99544445445555 6666776665 22 2222333455789999 888888765443 699999876 33
Q ss_pred ceeeecCCCCcEEEEEEecCCCcEEEEEeCCC--CEEEEeCCC
Q 011709 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEK 404 (479)
Q Consensus 364 ~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg--~v~iwd~~~ 404 (479)
.. .+. +........|+|+|+.++.+....+ .|.++++..
T Consensus 372 ~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 372 VR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred eE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 32 333 2234456799999997665554433 466677643
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.2e-12 Score=124.64 Aligned_cols=207 Identities=10% Similarity=0.058 Sum_probs=129.2
Q ss_pred CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC---CcEEEEecCCCccccccCCccc
Q 011709 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATA 239 (479)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~ 239 (479)
..|.++|.... ....+..+.. .+.+.+|+|+|+.|+..+.+ ..|.+||+.++..
T Consensus 176 ~~L~~~D~dG~-------------~~~~l~~~~~-~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--------- 232 (427)
T PRK02889 176 YQLQISDADGQ-------------NAQSALSSPE-PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--------- 232 (427)
T ss_pred cEEEEECCCCC-------------CceEeccCCC-CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE---------
Confidence 36777776443 1223444554 47899999999988876643 4599999976432
Q ss_pred ccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeC--CCCCCCcee
Q 011709 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA--RVGTSPVIK 317 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~ 317 (479)
..+......+...+|+|+|..++++.+.+|...+|.+ ..+. ..
T Consensus 233 --------------------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~ 277 (427)
T PRK02889 233 --------------------------------RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---LR 277 (427)
T ss_pred --------------------------------EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC---cE
Confidence 1122223345678999999666667788887666654 4333 33
Q ss_pred eeccCCCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCC-
Q 011709 318 VEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG- 395 (479)
Q Consensus 318 ~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg- 395 (479)
.+..+........|+| +++.|+..+. +|...||.+.... +. ...+..+.......+|+|+|++++ ..+.++
T Consensus 278 ~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~----g~-~~~lt~~g~~~~~~~~SpDG~~Ia-~~s~~~g 350 (427)
T PRK02889 278 RLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASG----GA-AQRVTFTGSYNTSPRISPDGKLLA-YISRVGG 350 (427)
T ss_pred ECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCC----Cc-eEEEecCCCCcCceEECCCCCEEE-EEEccCC
Confidence 4445555667789999 8887776554 5677777665321 22 222222233345688999999754 444333
Q ss_pred --CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCC
Q 011709 396 --LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 396 --~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~ 450 (479)
.|.+||+..+.. ..+. .+ .......|+||++.|+.+...
T Consensus 351 ~~~I~v~d~~~g~~-------------~~lt--~~-~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 351 AFKLYVQDLATGQV-------------TALT--DT-TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred cEEEEEEECCCCCe-------------EEcc--CC-CCccCceECCCCCEEEEEEec
Confidence 699999977311 1111 11 123678999999998887763
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=4.7e-14 Score=127.85 Aligned_cols=235 Identities=14% Similarity=0.177 Sum_probs=170.9
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
...+.-...|.++.|.. +..++|++-. ..++|||-... .++.++.|.. |..|.|-|..-+|++
T Consensus 164 ~~Ei~v~Etv~Dv~~LH-neq~~AVAQK-~y~yvYD~~Gt-------------ElHClk~~~~--v~rLeFLPyHfLL~~ 226 (545)
T KOG1272|consen 164 HFEINVMETVRDVTFLH-NEQFFAVAQK-KYVYVYDNNGT-------------ELHCLKRHIR--VARLEFLPYHFLLVA 226 (545)
T ss_pred eeeeehhhhhhhhhhhc-chHHHHhhhh-ceEEEecCCCc-------------EEeehhhcCc--hhhhcccchhheeee
Confidence 33445556788899988 7778887755 48999996543 4455666664 789999999989999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
++..|.+..-|+..+... ..+..-.+.+..++-+|-+ -+
T Consensus 227 ~~~~G~L~Y~DVS~GklV----------------------------------------a~~~t~~G~~~vm~qNP~N-aV 265 (545)
T KOG1272|consen 227 ASEAGFLKYQDVSTGKLV----------------------------------------ASIRTGAGRTDVMKQNPYN-AV 265 (545)
T ss_pred cccCCceEEEeechhhhh----------------------------------------HHHHccCCccchhhcCCcc-ce
Confidence 999999999999766543 2233345567777778877 57
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
+-+|...|+|.+|...+.. |++. +..|.++|.+|++.+ +|+|++|.+.|..|+|||+|+ ...++++.. ..
T Consensus 266 ih~GhsnGtVSlWSP~ske-PLvK-iLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~------~~ql~t~~t-p~ 335 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSKE-PLVK-ILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRN------FYQLHTYRT-PH 335 (545)
T ss_pred EEEcCCCceEEecCCCCcc-hHHH-HHhcCCCcceEEECC-CCcEEeecccccceeEeeecc------ccccceeec-CC
Confidence 8899999999999988776 3444 448999999999999 999999999999999999998 345555544 45
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecC
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNN 448 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~ 448 (479)
+...+++|..| +| .+|....|.||.=...+.. ........|..-..|.++.|.|-...|-.|.
T Consensus 336 ~a~~ls~Sqkg--lL-A~~~G~~v~iw~d~~~~s~---------~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 336 PASNLSLSQKG--LL-ALSYGDHVQIWKDALKGSG---------HGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred Ccccccccccc--ce-eeecCCeeeeehhhhcCCC---------CCCcchhhhccCcccccceeccHHHeeeccc
Confidence 67788898776 55 4445567999963322111 1112344555555788999988655554443
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=5.5e-12 Score=123.06 Aligned_cols=201 Identities=10% Similarity=0.110 Sum_probs=126.2
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
+...+.+.+.+.+|+| +++.||..+.+ ..|++||+.++. . ..+....+ .+.+.+|+|+|+.|
T Consensus 190 ~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~------------~-~~l~~~~g-~~~~~~~SPDG~~l 254 (427)
T PRK02889 190 SALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGR------------R-RVVANFKG-SNSAPAWSPDGRTL 254 (427)
T ss_pred EeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCC------------E-EEeecCCC-CccceEECCCCCEE
Confidence 3446778899999999 77777776643 369999998772 1 12222222 34689999999977
Q ss_pred E-EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 212 L-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 212 ~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
+ +.+.+|...+|.++.... ....+..+........|+|+|
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~---------------------------------------~~~~lt~~~~~~~~~~wSpDG 295 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGS---------------------------------------GLRRLTQSSGIDTEPFFSPDG 295 (427)
T ss_pred EEEEccCCCceEEEEECCCC---------------------------------------CcEECCCCCCCCcCeEEcCCC
Confidence 6 567788877776542100 012333344445677899999
Q ss_pred CcEEEEEecCCeEEEEeCC--CCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC---cEEEEecCCCCCCCCCCce
Q 011709 291 AQEFCSVGDDSCLILWDAR--VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSPI 365 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~~ 365 (479)
..+++++..+|...+|.+. ++. . ..+..+.......+|+| ++++|+..+.++ .|.+||+.. +..
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~--~-~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~------g~~- 364 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGA--A-QRVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLAT------GQV- 364 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCc--e-EEEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCC------CCe-
Confidence 6555554455666777554 333 2 22222223345689999 899988777654 699999986 332
Q ss_pred eeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEe
Q 011709 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 366 ~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd 401 (479)
..+..+ .......|+|+++.++.+....|.-.++-
T Consensus 365 ~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 365 TALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred EEccCC-CCccCceECCCCCEEEEEEecCCCEEEEE
Confidence 233322 23467899999998766665555533443
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=7.9e-11 Score=102.41 Aligned_cols=167 Identities=12% Similarity=0.262 Sum_probs=118.0
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCC-CceeeeeecCCCCcE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-NAEFALAMCPTEPYV 211 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~~v~~l~~s~~~~~l 211 (479)
.+..+....+|.+|++.+ +.|++.-. ..|+||.+.... +.+..+.-... ....+++-..+...|
T Consensus 87 ~i~el~f~~~I~~V~l~r---~riVvvl~-~~I~VytF~~n~-----------k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 87 CIIELSFNSEIKAVKLRR---DRIVVVLE-NKIYVYTFPDNP-----------KLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred EEEEEEeccceeeEEEcC---CeEEEEec-CeEEEEEcCCCh-----------hheeeeecccCCCceEeecCCCCceEE
Confidence 445566778999999866 35666554 489999998652 22222222111 112222222223344
Q ss_pred EE-ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 212 LS-GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 212 ~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
|. |-.-|.|.|-|+...... +...+..|...|.+++.+-+|
T Consensus 152 afPg~k~GqvQi~dL~~~~~~--------------------------------------~p~~I~AH~s~Iacv~Ln~~G 193 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPN--------------------------------------APSIINAHDSDIACVALNLQG 193 (346)
T ss_pred EcCCCccceEEEEEhhhcCcC--------------------------------------CceEEEcccCceeEEEEcCCc
Confidence 44 335689999998643221 125678899999999999999
Q ss_pred CcEEEEEecCCe-EEEEeCCCCCCCceeeec--cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 011709 291 AQEFCSVGDDSC-LILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (479)
Q Consensus 291 ~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~ 356 (479)
.++||+|..|+ |||||..++. .+..+. .....|.+++||| +..+|+++|+.|+|+||.++..
T Consensus 194 -t~vATaStkGTLIRIFdt~~g~--~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 194 -TLVATASTKGTLIRIFDTEDGT--LLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred -cEEEEeccCcEEEEEEEcCCCc--EeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecC
Confidence 79999999997 7999999998 444443 3456899999999 9999999999999999999863
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=1.9e-10 Score=100.05 Aligned_cols=179 Identities=18% Similarity=0.286 Sum_probs=123.9
Q ss_pred cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCC
Q 011709 164 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAG 243 (479)
Q Consensus 164 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 243 (479)
.|.|||=... +++..+.-.. .|.++.+.++ +|++.- .+.|.||...+.....
T Consensus 76 kviIWDD~k~------------~~i~el~f~~--~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l----------- 127 (346)
T KOG2111|consen 76 KVIIWDDLKE------------RCIIELSFNS--EIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLL----------- 127 (346)
T ss_pred eEEEEecccC------------cEEEEEEecc--ceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhhe-----------
Confidence 6999993333 5555555544 4889999866 355554 6789999886321110
Q ss_pred CCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE-EecCCeEEEEeCCCCCCCceeeeccC
Q 011709 244 SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS-VGDDSCLILWDARVGTSPVIKVEKAH 322 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~ 322 (479)
..+.+.... ..+.+++-+... .+|+. |-.-|.|+|-|+.......-....+|
T Consensus 128 -------------------------~~~et~~NP-kGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH 180 (346)
T KOG2111|consen 128 -------------------------HVIETRSNP-KGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPNAPSIINAH 180 (346)
T ss_pred -------------------------eeeecccCC-CceEeecCCCCc-eEEEcCCCccceEEEEEhhhcCcCCceEEEcc
Confidence 000111111 122222221122 23332 45569999999987763123556799
Q ss_pred CCCeEEEEecCCCCcEEEEEeCCCc-EEEEecCCCCCCCCCCceeeecCC--CCcEEEEEEecCCCcEEEEEeCCCCEEE
Q 011709 323 DADLHCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSSAEDGLLNI 399 (479)
Q Consensus 323 ~~~v~~l~~sp~~~~~l~tgs~dg~-I~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~llas~s~Dg~v~i 399 (479)
...|.|++.+. +|.++||+|..|+ |||||.++ +.++.+++-- ...|.+++|+|+..+ ||.+|+.|+|.|
T Consensus 181 ~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~------g~~l~E~RRG~d~A~iy~iaFSp~~s~-LavsSdKgTlHi 252 (346)
T KOG2111|consen 181 DSDIACVALNL-QGTLVATASTKGTLIRIFDTED------GTLLQELRRGVDRADIYCIAFSPNSSW-LAVSSDKGTLHI 252 (346)
T ss_pred cCceeEEEEcC-CccEEEEeccCcEEEEEEEcCC------CcEeeeeecCCchheEEEEEeCCCccE-EEEEcCCCeEEE
Confidence 99999999999 9999999999996 89999999 8899888642 347999999999995 789999999999
Q ss_pred EeCCCC
Q 011709 400 WDYEKV 405 (479)
Q Consensus 400 wd~~~~ 405 (479)
+.++..
T Consensus 253 F~l~~~ 258 (346)
T KOG2111|consen 253 FSLRDT 258 (346)
T ss_pred EEeecC
Confidence 999873
No 233
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.45 E-value=2.6e-11 Score=104.23 Aligned_cols=216 Identities=15% Similarity=0.117 Sum_probs=145.9
Q ss_pred CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC---CCC-cEEEecCCCcEEEEecCCCccccccCCc
Q 011709 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEP-YVLSGGKDKSVVLWSIQDHITSSATDPA 237 (479)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~---~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 237 (479)
.|.+.+|++....... -....-..|. .++.+.|.- +|. .|+-+..+|.|.++............+
T Consensus 45 ~Gkl~Lys~~d~~~~~--------l~~~q~~dts--~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~- 113 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP--------LDTLQCTDTS--TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG- 113 (339)
T ss_pred ccceEEEeecccccCc--------cceeeeeccc--ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc-
Confidence 4678888887763221 0111222333 367888874 233 466677789999987754332211111
Q ss_pred ccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCcee
Q 011709 238 TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK 317 (479)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 317 (479)
+...+-......++.|++.+ .-++++-.+|.+.+-+.....-..+.
T Consensus 114 ---------------------------------ls~~ki~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq 159 (339)
T KOG0280|consen 114 ---------------------------------LSSKKISVVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQ 159 (339)
T ss_pred ---------------------------------cchhhhhheeeeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecc
Confidence 00000011134577888888 45888888899986666555422344
Q ss_pred eeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceee-ecCCCCcEEEEEEecCCCcEEEEEeCCCC
Q 011709 318 VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGL 396 (479)
Q Consensus 318 ~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~llas~s~Dg~ 396 (479)
..+.|..+++...|+-.+.+++++|++||.+..||+|.+ +..+.. .+-|...|.+|.-+|..++.+++|+.|-.
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p-----~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP-----KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCC-----cceeeecceeeecceEEEecCCCCCceEEEeccccc
Confidence 678999999999999878899999999999999999953 244443 56789999999999988888999999999
Q ss_pred EEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCC
Q 011709 397 LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRE 441 (479)
Q Consensus 397 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~ 441 (479)
|++||.++.++++..... ..+|-.+.++|.-
T Consensus 235 i~~~DtRnm~kPl~~~~v--------------~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 235 IRVLDTRNMGKPLFKAKV--------------GGGVWRIKHHPEI 265 (339)
T ss_pred eeeeehhcccCccccCcc--------------ccceEEEEecchh
Confidence 999999987766544221 1446677777643
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=4e-12 Score=113.23 Aligned_cols=193 Identities=16% Similarity=0.207 Sum_probs=145.4
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCC--CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCcEE
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDS--PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVL 212 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~l~ 212 (479)
+.-...+..++-++..+.++|+|+.. ..+.|||++............+.. ..+.-. -.++++.|-+. ...|+
T Consensus 145 la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~--L~LrVP--vW~tdi~Fl~g~~~~~fa 220 (412)
T KOG3881|consen 145 LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDR--LGLRVP--VWITDIRFLEGSPNYKFA 220 (412)
T ss_pred eecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcc--ccceee--eeeccceecCCCCCceEE
Confidence 34446788899999899999999998 899999999873332221111111 112211 13678889887 77999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+++.-+.+++||.+.+. +|+..+.--..++.++...|.+ +
T Consensus 221 t~T~~hqvR~YDt~~qR---------------------------------------RPV~~fd~~E~~is~~~l~p~g-n 260 (412)
T KOG3881|consen 221 TITRYHQVRLYDTRHQR---------------------------------------RPVAQFDFLENPISSTGLTPSG-N 260 (412)
T ss_pred EEecceeEEEecCcccC---------------------------------------cceeEeccccCcceeeeecCCC-c
Confidence 99999999999997432 3344555557789999999999 7
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceee-eccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
++++|..-|.+..||+|.+. +... +.+-.+.|.+|..+| ...+++++|-|+.|||+|+.+ .++++..- -
T Consensus 261 ~Iy~gn~~g~l~~FD~r~~k--l~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~kt------rkll~kvY-v 330 (412)
T KOG3881|consen 261 FIYTGNTKGQLAKFDLRGGK--LLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKT------RKLLHKVY-V 330 (412)
T ss_pred EEEEecccchhheecccCce--eeccccCCccCCcceEEEcC-CCceEEeeccceeEEEeeccc------chhhhhhh-h
Confidence 89999999999999999988 4444 778899999999999 889999999999999999998 45555432 2
Q ss_pred CCcEEEEEEecC
Q 011709 372 SAAVLCVQWSPD 383 (479)
Q Consensus 372 ~~~v~~l~~~p~ 383 (479)
...+++|-+.++
T Consensus 331 Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 331 KSRLTFILLRDD 342 (412)
T ss_pred hccccEEEecCC
Confidence 345666766554
No 235
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=8.6e-13 Score=120.50 Aligned_cols=226 Identities=15% Similarity=0.210 Sum_probs=165.6
Q ss_pred CCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCC
Q 011709 186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265 (479)
Q Consensus 186 ~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (479)
.....|.+|.+ .|..+.|+..|..|+||+.|..|.+||........
T Consensus 133 ~l~~kL~~H~G-cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l--------------------------------- 178 (559)
T KOG1334|consen 133 RLQKKLNKHKG-CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKL--------------------------------- 178 (559)
T ss_pred hhhhcccCCCC-ccceeeecccCceeeccCccceEEeehhhccCccc---------------------------------
Confidence 34456888997 69999999999999999999999999987544322
Q ss_pred CCCCCceeecCCCCceEEEEEeeC-CCcEEEEEecCCeEEEEeCCCCCC-CceeeeccCCCCeEEEEecCCCCcEEEEEe
Q 011709 266 PSVGPRGIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGS 343 (479)
Q Consensus 266 ~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs 343 (479)
.-..+|...|..-.|-|. +...+++++.||.|++=.+-.... .-...+..|.+.|.-++.-|.+..-|.+++
T Consensus 179 ------~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~g 252 (559)
T KOG1334|consen 179 ------SFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCG 252 (559)
T ss_pred ------ccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccc
Confidence 223467777877788774 446799999999999877654332 224556689999999999998889999999
Q ss_pred CCCcEEEEecCCCCCCCCCCceeeecCCCC---cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCC
Q 011709 344 ADNSVRMFDRRNLTSNGVGSPINKFEGHSA---AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 420 (479)
Q Consensus 344 ~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 420 (479)
.|+.+.=+|++..... ..+..-..+.. ..+.++.+|...+.||+++.|..+++||.+.....-..... ....|
T Consensus 253 eD~~v~~~Dlr~~~pa---~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~-~~f~p 328 (559)
T KOG1334|consen 253 EDAVVFHIDLRQDVPA---EKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVL-DKFCP 328 (559)
T ss_pred cccceeeeeeccCCcc---ceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchh-hhcCC
Confidence 9999999999983311 11112223333 57889999999989999999999999999875333222111 11223
Q ss_pred eeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEE
Q 011709 421 GLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIY 461 (479)
Q Consensus 421 ~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~ 461 (479)
.-+.. .-+..|++++|+.++.-|.+.-+ |--|.++
T Consensus 329 ~hl~~-d~~v~ITgl~Ysh~~sElLaSYn-----De~IYLF 363 (559)
T KOG1334|consen 329 HHLVE-DDPVNITGLVYSHDGSELLASYN-----DEDIYLF 363 (559)
T ss_pred ccccc-cCcccceeEEecCCccceeeeec-----ccceEEe
Confidence 33333 55667999999988877766655 6777777
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=5.2e-11 Score=116.72 Aligned_cols=204 Identities=12% Similarity=0.150 Sum_probs=131.9
Q ss_pred CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC---CcEEEEecCCCccccccCCccc
Q 011709 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATA 239 (479)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~ 239 (479)
..|.++|.... ....+..+.. .+...+|+|+|++|+.++.+ ..|.+||+.++..
T Consensus 170 ~~l~~~d~~g~-------------~~~~l~~~~~-~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--------- 226 (417)
T TIGR02800 170 YELQVADYDGA-------------NPQTITRSRE-PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--------- 226 (417)
T ss_pred ceEEEEcCCCC-------------CCEEeecCCC-ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---------
Confidence 36888887543 1233444544 47789999999998876643 4799999875422
Q ss_pred ccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC--eEEEEeCCCCCCCcee
Q 011709 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIK 317 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 317 (479)
..+..+...+.+++|+|++..++++.+.++ .|.+||+.++. ..
T Consensus 227 --------------------------------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---~~ 271 (417)
T TIGR02800 227 --------------------------------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---LT 271 (417)
T ss_pred --------------------------------EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---EE
Confidence 122223445667899999966666666555 58888988766 23
Q ss_pred eeccCCCCeEEEEecCCCCcEEEEEeC-CC--cEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC
Q 011709 318 VEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394 (479)
Q Consensus 318 ~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D 394 (479)
.+..+........|+| ++..|+..+. ++ .|+++|+.. +. ...+..+...+....|+|++.+++ .++.+
T Consensus 272 ~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~------~~-~~~l~~~~~~~~~~~~spdg~~i~-~~~~~ 342 (417)
T TIGR02800 272 RLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADG------GE-VRRLTFRGGYNASPSWSPDGDLIA-FVHRE 342 (417)
T ss_pred ECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCC------CC-EEEeecCCCCccCeEECCCCCEEE-EEEcc
Confidence 3334555556789999 8887776654 34 577777765 22 344444556677899999999654 55555
Q ss_pred C---CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 395 G---LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 395 g---~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
+ .|.+||+... .. ..+. .........|+|++++|+....
T Consensus 343 ~~~~~i~~~d~~~~-~~------------~~l~---~~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 343 GGGFNIAVMDLDGG-GE------------RVLT---DTGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred CCceEEEEEeCCCC-Ce------------EEcc---CCCCCCCceECCCCCEEEEEEe
Confidence 4 6888888762 11 1111 1112345689999998887766
No 237
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=3.6e-09 Score=94.23 Aligned_cols=309 Identities=12% Similarity=0.188 Sum_probs=189.8
Q ss_pred EEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeC---
Q 011709 85 QRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTD--- 161 (479)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~--- 161 (479)
+.+|+||.|.++ ...|++|+++... ..+...+...+.+.++-|+++| +.+.|.++..
T Consensus 3 ~~~YiGtyT~~~-s~gI~v~~ld~~~------------------g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~ 62 (346)
T COG2706 3 QTVYIGTYTKRE-SQGIYVFNLDTKT------------------GELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGE 62 (346)
T ss_pred eEEEEeeecccC-CCceEEEEEeCcc------------------cccchhhhccccCCCceEEECC-CCCEEEEEEecCC
Confidence 688999998664 5567777765311 1122455667788899999999 6666666654
Q ss_pred CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec-CCCcEEEEecCCC-ccccccCCccc
Q 011709 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDH-ITSSATDPATA 239 (479)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s-~dg~i~vwd~~~~-~~~~~~~~~~~ 239 (479)
+|.|.-|.++......+. .-...+.++ .-+-++++++|++|+++. .-|.|.++-++.. .........
T Consensus 63 ~ggvaay~iD~~~G~Lt~------ln~~~~~g~---~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-- 131 (346)
T COG2706 63 EGGVAAYRIDPDDGRLTF------LNRQTLPGS---PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-- 131 (346)
T ss_pred cCcEEEEEEcCCCCeEEE------eeccccCCC---CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeee--
Confidence 477888877753111100 000111222 226899999999988876 4589999988652 110000000
Q ss_pred ccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe-cCCeEEEEeCCCCCCCce-e
Q 011709 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVGTSPVI-K 317 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~-~ 317 (479)
. . ....+ . .+....-+....+.|++ ++++++. .-..|.+|++..+..... .
T Consensus 132 -~----------------------h-~g~~p-~-~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~ 184 (346)
T COG2706 132 -K----------------------H-TGSGP-H-ERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADP 184 (346)
T ss_pred -e----------------------c-CCCCC-C-ccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccc
Confidence 0 0 00000 0 00011126788999999 5555543 334799999997762111 1
Q ss_pred eeccCCCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCCCCCCCCCCceeeec------CCCCcEEEEEEecCCCcEEEE
Q 011709 318 VEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKFE------GHSAAVLCVQWSPDKSSVFGS 390 (479)
Q Consensus 318 ~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~llas 390 (479)
........-..|.|+| ++++.+..++ +++|-+|........ -+.++.+. .-......|..+|+|++|.|+
T Consensus 185 ~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~--~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas 261 (346)
T COG2706 185 AEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGK--FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS 261 (346)
T ss_pred cccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCce--EEEeeeeccCccccCCCCceeEEEECCCCCEEEEe
Confidence 1113445678899999 9999888877 899999999874210 11222221 123467789999999988777
Q ss_pred EeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecccccc
Q 011709 391 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEALKS 469 (479)
Q Consensus 391 ~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~~~ 469 (479)
--....|.++.+...+..+ +++-...-+.. ..++.|+|.+++|++++.. +.+|.+|.....-..
T Consensus 262 NRg~dsI~~f~V~~~~g~L-----------~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~----sd~i~vf~~d~~TG~ 326 (346)
T COG2706 262 NRGHDSIAVFSVDPDGGKL-----------ELVGITPTEGQFPRDFNINPSGRFLIAANQK----SDNITVFERDKETGR 326 (346)
T ss_pred cCCCCeEEEEEEcCCCCEE-----------EEEEEeccCCcCCccceeCCCCCEEEEEccC----CCcEEEEEEcCCCce
Confidence 6666789999987743322 22222222222 5899999999999999986 888999976655433
No 238
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.43 E-value=1.2e-11 Score=124.70 Aligned_cols=226 Identities=15% Similarity=0.212 Sum_probs=154.0
Q ss_pred CCcEEEeccCCCceeeeeecCCC-CcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCC
Q 011709 186 RPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264 (479)
Q Consensus 186 ~~~~~~~~h~~~~v~~l~~s~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (479)
..+..+..|... +..++.++.. .+++|||.||+|++||.+......
T Consensus 1039 ~lVAhL~Ehs~~-v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-------------------------------- 1085 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSA-VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-------------------------------- 1085 (1431)
T ss_pred eEeehhhhcccc-ccceeecCCCCceEEEecCCceEEEeeehhhhcCc--------------------------------
Confidence 345566677764 5677777664 899999999999999997532210
Q ss_pred CCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCC-----ceeeeccC--CCCeEEEEecCCCCc
Q 011709 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-----VIKVEKAH--DADLHCVDWNPLDDN 337 (479)
Q Consensus 265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~--~~~v~~l~~sp~~~~ 337 (479)
.+.+...++..-...+..+.+.+.+ ..+|.++.||.|++.++...... ..+....+ ..-|..-+|......
T Consensus 1086 -~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S 1163 (1431)
T KOG1240|consen 1086 -GSARSELTYSPEGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS 1163 (1431)
T ss_pred -ceeeeeEEEeccCCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc
Confidence 1112223444456678899998888 67899999999999999863211 11111111 222334445443344
Q ss_pred -EEEEEeCCCcEEEEecCCCCCCCCCCceee--ecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCC
Q 011709 338 -LILTGSADNSVRMFDRRNLTSNGVGSPINK--FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 414 (479)
Q Consensus 338 -~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~ 414 (479)
.++.+..-+.|..||+|+. .-+.. .....+.|++++.+|.+.+ ++.|...|.+.+||++-.
T Consensus 1164 ~~lvy~T~~~~iv~~D~r~~------~~~w~lk~~~~hG~vTSi~idp~~~W-lviGts~G~l~lWDLRF~--------- 1227 (1431)
T KOG1240|consen 1164 HVLVYATDLSRIVSWDTRMR------HDAWRLKNQLRHGLVTSIVIDPWCNW-LVIGTSRGQLVLWDLRFR--------- 1227 (1431)
T ss_pred eeEEEEEeccceEEecchhh------hhHHhhhcCccccceeEEEecCCceE-EEEecCCceEEEEEeecC---------
Confidence 7888888999999999983 33332 3334578999999999995 779999999999999982
Q ss_pred CCCCCCeeEEEeCCCCCceeEEEec---CCCeeeecCC-CccccceeEEEEeecccccce
Q 011709 415 TTNYPAGLFFQHAGHSPSSSIKFVL---RESCLVDNNH-GLSYANKKIKIYCHLEALKSF 470 (479)
Q Consensus 415 ~~~~~~~l~~~~~gh~~~~~~~~sp---~~~~l~~~~~-~~~~~d~~i~i~~~~~~~~~~ 470 (479)
.+-.-+.++.|..+..+..+| +....++++. + .+-|.+|+....+..+
T Consensus 1228 ----~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~----~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1228 ----VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS----NNEVSTWNMETGLRQT 1279 (1431)
T ss_pred ----ceeecccCcccCCcceEEeeccCCCCceEEEecccC----CCceeeeecccCcceE
Confidence 334456677777777776665 3455665555 5 7889999877765443
No 239
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.42 E-value=3e-11 Score=105.29 Aligned_cols=271 Identities=13% Similarity=0.149 Sum_probs=166.8
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecCCCc
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKS 219 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~dg~ 219 (479)
+.|.-+.|..+...+|.....++.|.+|++... .-...+..-.. .+.+++|||+|+ .|.+...|-.
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp------------ew~ckIdeg~a-gls~~~WSPdgrhiL~tseF~lr 115 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP------------EWYCKIDEGQA-GLSSISWSPDGRHILLTSEFDLR 115 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecc------------eeEEEeccCCC-cceeeeECCCcceEeeeecceeE
Confidence 456777888766667778888999999999876 22233333333 478999999997 5556778999
Q ss_pred EEEEecCCCccccccCCccc---ccCCCCCceeecCCC----------------------------------CCCCCCCC
Q 011709 220 VVLWSIQDHITSSATDPATA---KSAGSSGSIIKQSPK----------------------------------PGDGNDKA 262 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------------------------------~~~~~~~~ 262 (479)
|.||.+.+........+... .....++........ +.+..+.+
T Consensus 116 iTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV 195 (447)
T KOG4497|consen 116 ITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV 195 (447)
T ss_pred EEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE
Confidence 99999987644322222111 111111111111111 11111222
Q ss_pred CCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCC------------C----------------
Q 011709 263 ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS------------P---------------- 314 (479)
Q Consensus 263 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------------~---------------- 314 (479)
|+..---.+..+. -.-.+..++|+|.+ ++++.|+.|+.+|+-+--+.+. +
T Consensus 196 wd~~Leykv~aYe-~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 196 WDNVLEYKVYAYE-RGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred ecchhhheeeeee-eccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 2211111111111 12468889999998 7999999999988765322110 0
Q ss_pred ------------------------------ceeeec------cCCCCeEEEEecCCCCcEEEEEeCC--CcEEEEecCCC
Q 011709 315 ------------------------------VIKVEK------AHDADLHCVDWNPLDDNLILTGSAD--NSVRMFDRRNL 356 (479)
Q Consensus 315 ------------------------------~~~~~~------~~~~~v~~l~~sp~~~~~l~tgs~d--g~I~iwd~~~~ 356 (479)
.+..++ .....+.-++|++ |..|++|-.+. ..+-+||++.
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~- 351 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQN- 351 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechh-
Confidence 000000 1134567799999 99999987764 5799999997
Q ss_pred CCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEE
Q 011709 357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIK 436 (479)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~ 436 (479)
..++..--...+|....|+|..+.++ .+.....+.+|...-. ..+-+..--.+|.+++
T Consensus 352 ------l~l~avLiQk~piraf~WdP~~prL~-vctg~srLY~W~psg~---------------~~V~vP~~GF~i~~l~ 409 (447)
T KOG4497|consen 352 ------LKLHAVLIQKHPIRAFEWDPGRPRLV-VCTGKSRLYFWAPSGP---------------RVVGVPKKGFNIQKLQ 409 (447)
T ss_pred ------hhhhhhhhhccceeEEEeCCCCceEE-EEcCCceEEEEcCCCc---------------eEEecCCCCceeeeEE
Confidence 23333333567899999999998754 5555667999987642 2222222225589999
Q ss_pred EecCCCeeeecCCC
Q 011709 437 FVLRESCLVDNNHG 450 (479)
Q Consensus 437 ~sp~~~~l~~~~~~ 450 (479)
|.-+|.+++-.+.+
T Consensus 410 W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 410 WLQPGEFIVLCGKD 423 (447)
T ss_pred ecCCCcEEEEEcCC
Confidence 99999998888774
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=7e-12 Score=124.69 Aligned_cols=193 Identities=19% Similarity=0.311 Sum_probs=145.9
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccc
Q 011709 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (479)
Q Consensus 152 ~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~ 231 (479)
....++.++.+..+.+||.............. ...+. ....+-++++.-++++|+.-+.|.+|+......
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e----r~~l~-----~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~- 167 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE----RCTLY-----SSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK- 167 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCc----eEEEE-----eEEEEeccCcEEEEEeccccccEEEEeccccCC-
Confidence 44567777777899999998763322211110 00010 112334455666899999999999999862110
Q ss_pred cccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCC
Q 011709 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 311 (479)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 311 (479)
+ ..+.+|.+.|.++.|+.+| .+++++|+|.++|+|++.+.
T Consensus 168 --------------------------------------p-~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~ 207 (967)
T KOG0974|consen 168 --------------------------------------P-IRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSR 207 (967)
T ss_pred --------------------------------------c-ceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccc
Confidence 1 2578999999999999999 79999999999999999998
Q ss_pred CCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC-cEEEEEEecCCCcEEEE
Q 011709 312 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA-AVLCVQWSPDKSSVFGS 390 (479)
Q Consensus 312 ~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~p~~~~llas 390 (479)
+... -...+|...|..+.|.| + +++|++.|.+.++|+.. +..+.++..|.+ .|..++..+... +.+|
T Consensus 208 ~~~~-~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~-------~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT 275 (967)
T KOG0974|consen 208 EVLG-CTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVN-------GTQLEVYDEHSGKGIWKIAVPIGVI-IKVT 275 (967)
T ss_pred cccC-cccccccceeEEEEecc-c--eeEEeccceEEEEEecc-------cceehhhhhhhhcceeEEEEcCCce-EEEe
Confidence 8422 24459999999999998 4 99999999999999776 466778888875 688898887766 6889
Q ss_pred EeCCCCEEEEeCCCCC
Q 011709 391 SAEDGLLNIWDYEKVG 406 (479)
Q Consensus 391 ~s~Dg~v~iwd~~~~~ 406 (479)
++.||.+++||+...+
T Consensus 276 ~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 276 GGNDSTLKLWDLNGRG 291 (967)
T ss_pred eccCcchhhhhhhccc
Confidence 9999999999987643
No 241
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.41 E-value=3.1e-12 Score=122.44 Aligned_cols=215 Identities=20% Similarity=0.390 Sum_probs=158.5
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC---
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--- 209 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~--- 209 (479)
+.-.+...+.++++..+| .++-+|.++.-| +.+-|+...- .+..-+..-+...|-.+.|+|...
T Consensus 17 kslsl~v~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~-----------~ppr~l~h~tpw~vad~qws~h~a~~~ 83 (1081)
T KOG0309|consen 17 KSLSLKVDGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPF-----------TPPRWLHHITPWQVADVQWSPHPAKPY 83 (1081)
T ss_pred ceeEEEecCcccceeecc-ccchhhhhhhcC-eEEEeccCCC-----------CCceeeeccCcchhcceecccCCCCce
Confidence 444456678899999999 777788887765 6777887652 233333333334566788888643
Q ss_pred cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC
Q 011709 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (479)
Q Consensus 210 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (479)
.+++.+ ...-.+|++...... ..-..+.+|...|+++.|+|+
T Consensus 84 wiVsts-~qkaiiwnlA~ss~~-------------------------------------aIef~lhghsraitd~n~~~q 125 (1081)
T KOG0309|consen 84 WIVSTS-NQKAIIWNLAKSSSN-------------------------------------AIEFVLHGHSRAITDINFNPQ 125 (1081)
T ss_pred eEEecC-cchhhhhhhhcCCcc-------------------------------------ceEEEEecCccceeccccCCC
Confidence 344444 555678988632111 112567899999999999999
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec
Q 011709 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
.+.++++++-|..+..||+|+...+..... .-......|+|+-.+++.+ +.+....|++||+|.. +.++..++
T Consensus 126 ~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p~vl-asshg~~i~vwd~r~g-----s~pl~s~K 198 (1081)
T KOG0309|consen 126 HPDVLATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDPNVL-ASSHGNDIFVWDLRKG-----STPLCSLK 198 (1081)
T ss_pred CCcceeeccccccceeeeccCCCcceeeee-cccccCceeeecccCcchh-hhccCCceEEEeccCC-----CcceEEec
Confidence 999999999999999999999887654444 3445567899998555554 4556778999999985 47899999
Q ss_pred CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 370 ~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+|...|+.++|.......+.+++.||+|+.||..+.
T Consensus 199 ~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 199 GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred ccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 999999999998765445669999999999999874
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.41 E-value=4.5e-12 Score=111.02 Aligned_cols=275 Identities=15% Similarity=0.228 Sum_probs=176.7
Q ss_pred eEEEecCCCceeEEEecCC-CCcEEEEEeCCCcEEEEECCCCCCcccc-------------------CCC----CCCCCc
Q 011709 133 KHKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAV-------------------LGA----TNSRPD 188 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~-~~~~lat~s~dg~i~iwd~~~~~~~~~~-------------------~~~----~~~~~~ 188 (479)
-++.+.-...|+.++|.++ +...+...+.|.+|++|-+......... ... ....+.
T Consensus 77 YLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~pr 156 (433)
T KOG1354|consen 77 YLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPR 156 (433)
T ss_pred hhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeee
Confidence 3444555678999999884 4556777889999999998765433310 000 000112
Q ss_pred EEE-eccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCC
Q 011709 189 LIL-TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267 (479)
Q Consensus 189 ~~~-~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (479)
..+ .+|+- .|+++.++.|+..++|+. |=.|.+|+++-....... .|.
T Consensus 157 Rv~aNaHty-hiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnI----------------------------VDI-- 204 (433)
T KOG1354|consen 157 RVYANAHTY-HINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNI----------------------------VDI-- 204 (433)
T ss_pred eecccccee-EeeeeeecCccceEeecc-ceeeeeccccccCCceeE----------------------------EEc--
Confidence 222 35665 589999999999999876 788999998632111000 000
Q ss_pred CCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCC-----Cc---------eeeeccCCCCeEEEEecC
Q 011709 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-----PV---------IKVEKAHDADLHCVDWNP 333 (479)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~---------~~~~~~~~~~v~~l~~sp 333 (479)
+| ..+..-+.-|++..|||..-++|+-.+..|+|++-|+|.... .+ ...+..--..|..+.|++
T Consensus 205 -KP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~ 282 (433)
T KOG1354|consen 205 -KP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH 282 (433)
T ss_pred -cc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc
Confidence 00 222233456899999998878899999999999999995430 00 011112235688899999
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC------------cE---EEEEEecCCCcEEEEEeCCCCEE
Q 011709 334 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA------------AV---LCVQWSPDKSSVFGSSAEDGLLN 398 (479)
Q Consensus 334 ~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~------------~v---~~l~~~p~~~~llas~s~Dg~v~ 398 (479)
+|+|+++-+. -+|++||+... .+|+.++..|.. .| ..++|+.++.+ ++|||....++
T Consensus 283 -sGryilsRDy-ltvk~wD~nme-----~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~-v~TGsy~n~fr 354 (433)
T KOG1354|consen 283 -SGRYILSRDY-LTVKLWDLNME-----AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY-VMTGSYNNVFR 354 (433)
T ss_pred -CCcEEEEecc-ceeEEEecccc-----CCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce-EecccccceEE
Confidence 9999998653 68999999653 477777776642 22 45789998886 56999999999
Q ss_pred EEeCCCCCccccCCCCCCCC-CC----ee-EEEeCCCC-----C---------ceeEEEecCCCeeeecCC
Q 011709 399 IWDYEKVGKKVEQGPRTTNY-PA----GL-FFQHAGHS-----P---------SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 399 iwd~~~~~~~~~~~~~~~~~-~~----~l-~~~~~gh~-----~---------~~~~~~sp~~~~l~~~~~ 449 (479)
++++..+............. ++ .+ ....+|.. . +...+|+|....++.+..
T Consensus 355 vf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aat 425 (433)
T KOG1354|consen 355 VFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAAT 425 (433)
T ss_pred EecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeec
Confidence 99987754443333322211 11 11 12223333 1 356789999888877665
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=3.1e-09 Score=100.75 Aligned_cols=305 Identities=12% Similarity=0.145 Sum_probs=178.6
Q ss_pred EEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeC----C
Q 011709 87 LYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTD----S 162 (479)
Q Consensus 87 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~----d 162 (479)
+|+|+.+. .....|.++.++.. ...+.......-......+.++| ++++|.+... +
T Consensus 2 ~~vgsy~~-~~~~gI~~~~~d~~------------------~g~l~~~~~~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~ 61 (345)
T PF10282_consen 2 LYVGSYTN-GKGGGIYVFRFDEE------------------TGTLTLVQTVAEGENPSWLAVSP-DGRRLYVVNEGSGDS 61 (345)
T ss_dssp EEEEECCS-SSSTEEEEEEEETT------------------TTEEEEEEEEEESSSECCEEE-T-TSSEEEEEETTSSTT
T ss_pred EEEEcCCC-CCCCcEEEEEEcCC------------------CCCceEeeeecCCCCCceEEEEe-CCCEEEEEEccccCC
Confidence 67888776 35567777665321 11222333344455667788899 5566666655 5
Q ss_pred CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec-CCCcEEEEecCCCccccccCCccccc
Q 011709 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKS 241 (479)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~ 241 (479)
|.|..|++..... ....+....... .....++++|++++|+++. .+|.|.++++............ ..
T Consensus 62 g~v~~~~i~~~~g--------~L~~~~~~~~~g-~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~--~~ 130 (345)
T PF10282_consen 62 GGVSSYRIDPDTG--------TLTLLNSVPSGG-SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQT--VR 130 (345)
T ss_dssp TEEEEEEEETTTT--------EEEEEEEEEESS-SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEE--EE
T ss_pred CCEEEEEECCCcc--------eeEEeeeeccCC-CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeee--cc
Confidence 7899998876410 111222222112 2245899999999888776 5899999999763111000000 00
Q ss_pred CCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCcee--e-
Q 011709 242 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK--V- 318 (479)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~- 318 (479)
..+ .. + ...........++.|+|++..++++.-....|.+|++......+.. .
T Consensus 131 ~~g---------------------~g--~-~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~ 186 (345)
T PF10282_consen 131 HEG---------------------SG--P-NPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI 186 (345)
T ss_dssp SEE---------------------EE--S-STTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE
T ss_pred cCC---------------------CC--C-cccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc
Confidence 000 00 0 0000122346789999999655555555668999999876522211 1
Q ss_pred eccCCCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCCCCCCCCCCceeeecC----C--CCcEEEEEEecCCCcEEEEE
Q 011709 319 EKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKFEG----H--SAAVLCVQWSPDKSSVFGSS 391 (479)
Q Consensus 319 ~~~~~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~----h--~~~v~~l~~~p~~~~llas~ 391 (479)
.......-..++|+| ++++++.... ++.|.++++..... ....+..+.. . ......|+++|++++|+++.
T Consensus 187 ~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn 263 (345)
T PF10282_consen 187 KVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN 263 (345)
T ss_dssp ECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE
T ss_pred ccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe
Confidence 124456678999999 8877766655 78899999983220 0112222211 1 12578899999999999888
Q ss_pred eCCCCEEEEeCCCC-CccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 392 AEDGLLNIWDYEKV-GKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 392 s~Dg~v~iwd~~~~-~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.....|.+|++... +... .+-....+-.....++++|+|++|+.++.+ ++.|.+|..-
T Consensus 264 r~~~sI~vf~~d~~~g~l~-----------~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~----s~~v~vf~~d 322 (345)
T PF10282_consen 264 RGSNSISVFDLDPATGTLT-----------LVQTVPTGGKFPRHFAFSPDGRYLYVANQD----SNTVSVFDID 322 (345)
T ss_dssp CTTTEEEEEEECTTTTTEE-----------EEEEEEESSSSEEEEEE-TTSSEEEEEETT----TTEEEEEEEE
T ss_pred ccCCEEEEEEEecCCCceE-----------EEEEEeCCCCCccEEEEeCCCCEEEEEecC----CCeEEEEEEe
Confidence 88999999999432 2111 111222222236899999999999988876 8899999764
No 244
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=3.3e-12 Score=133.03 Aligned_cols=192 Identities=16% Similarity=0.325 Sum_probs=148.6
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
.|-..|.++.-+|.+ .+.+||+.||.|++|....+ ..+..++.-....|+.+.|+.+|+.+..+..|
T Consensus 2206 ~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~------------~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~d 2272 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHG------------QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGD 2272 (2439)
T ss_pred cccCceeeecCCCCC-ceEEecCCCceEEEEeccCC------------CeEEEeeccCcchhhhhhhcccCCceeeeccC
Confidence 344678888888844 47789999999999999887 33333332222468999999999999999999
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
|.+.+|.+.. .+....+.|.....++.|-. ..++++
T Consensus 2273 g~l~l~q~~p-----------------------------------------k~~~s~qchnk~~~Df~Fi~---s~~~ta 2308 (2439)
T KOG1064|consen 2273 GDLSLWQASP-----------------------------------------KPYTSWQCHNKALSDFRFIG---SLLATA 2308 (2439)
T ss_pred CceeecccCC-----------------------------------------cceeccccCCccccceeeee---hhhhcc
Confidence 9999998852 12245567888899999876 346664
Q ss_pred ---ecCCeEEEEeCCCCCC-CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 298 ---GDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 298 ---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
++++.+.+||.--... .++. ..|.+.++++++.| ...+|++||.+|.|++||+|. .+.++.++.
T Consensus 2309 g~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rq------rql~h~~~~--- 2376 (2439)
T KOG1064|consen 2309 GRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQ------RQLRHTFQA--- 2376 (2439)
T ss_pred ccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHH------HHHHHHhhh---
Confidence 4678999999865432 2344 68999999999999 899999999999999999998 566666664
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCC
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 406 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~ 406 (479)
++ ... .|++|+..|.++||++...+
T Consensus 2377 ------~~-~~~-~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 ------LD-TRE-YFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred ------hh-hhh-eeeccCcccceEEEEccccc
Confidence 44 333 57899999999999999863
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=9.1e-11 Score=109.57 Aligned_cols=212 Identities=12% Similarity=0.209 Sum_probs=149.9
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEE
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~ 221 (479)
.-..++|+..+..++..|+.. .|+=++++.+ +.+..+....+ .++++..++-..+|++|+.+|.|-
T Consensus 135 ~GRDm~y~~~scDly~~gsg~-evYRlNLEqG------------rfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 135 FGRDMKYHKPSCDLYLVGSGS-EVYRLNLEQG------------RFLNPFETDSG-ELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred CCccccccCCCccEEEeecCc-ceEEEEcccc------------ccccccccccc-cceeeeecCccceEEecccCceEE
Confidence 345666776566666666554 7888999988 44444554444 589999999999999999999999
Q ss_pred EEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC
Q 011709 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (479)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (479)
.||.+............. -...........|+++.|+.+| ..+++|+.+|
T Consensus 201 fwDpR~ksrv~~l~~~~~-----------------------------v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G 250 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASS-----------------------------VNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTG 250 (703)
T ss_pred Eecchhhhhheeeecccc-----------------------------cCCCccccccCcceEEEecCCc-eeEEeeccCC
Confidence 999986543221111000 0001111123459999999887 7899999999
Q ss_pred eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEe
Q 011709 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381 (479)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 381 (479)
.|.|||+|+.+. ++..-.+..-+|..+.|.+.++.--+...+...++|||-.. +++...+.. ...++.+++-
T Consensus 251 ~v~iyDLRa~~p-l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~------Gk~~asiEp-t~~lND~C~~ 322 (703)
T KOG2321|consen 251 SVLIYDLRASKP-LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT------GKPMASIEP-TSDLNDFCFV 322 (703)
T ss_pred cEEEEEcccCCc-eeecccCCccceeeecccccCCCceEEecchHHhhhccccc------CCceeeccc-cCCcCceeee
Confidence 999999999883 33333355678999999874333333334457899999998 788877774 4559999999
Q ss_pred cCCCcEEEEEeCCCCEEEEeCCCCC
Q 011709 382 PDKSSVFGSSAEDGLLNIWDYEKVG 406 (479)
Q Consensus 382 p~~~~llas~s~Dg~v~iwd~~~~~ 406 (479)
|++. +|.++-.++.+..|=+...|
T Consensus 323 p~sG-m~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 323 PGSG-MFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred cCCc-eEEEecCCCcceeEEccccC
Confidence 9988 56699888888888776643
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=6.6e-11 Score=111.15 Aligned_cols=196 Identities=19% Similarity=0.272 Sum_probs=148.9
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeec------C--------------CCC
Q 011709 150 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC------P--------------TEP 209 (479)
Q Consensus 150 p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s------~--------------~~~ 209 (479)
|....++|..+.||.++|||...+...... .+.. |..+..++..|. | +-.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~------~p~~----~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~ 71 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEF------APIA----SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTS 71 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeee------ccch----hccCcceeEEEEEEeccchHHHHhHHHHhhccCCce
Confidence 346679999999999999999987433211 1111 111122333332 1 112
Q ss_pred cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC
Q 011709 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (479)
Q Consensus 210 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (479)
.++-|...|.|.++++..+..... ..-..|.+.|+++.++.+
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~--------------------------------------~st~~h~~~v~~~~~~~~ 113 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAK--------------------------------------LSTDKHYGNVNEILDAQR 113 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEE--------------------------------------EecCCCCCcceeeecccc
Confidence 456666777888887765544321 111358999999999887
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec
Q 011709 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
- ..|.+++.|+.+..|+..... ...........+.+++.+| |+..+++++ +.|++||+.+ .+.+..|.
T Consensus 114 ~-~ciyS~~ad~~v~~~~~~~~~--~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~------kevv~~ft 181 (541)
T KOG4547|consen 114 L-GCIYSVGADLKVVYILEKEKV--IIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIET------KEVVITFT 181 (541)
T ss_pred c-CceEecCCceeEEEEecccce--eeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccC------ceEEEEec
Confidence 7 689999999999999999887 6777778888999999999 899999887 5999999999 78999999
Q ss_pred CCCCcEEEEEEecC-----CCcEEEEEeCCCCEEEEeCCCC
Q 011709 370 GHSAAVLCVQWSPD-----KSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 370 ~h~~~v~~l~~~p~-----~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+|.++|.++.|--. |.++|.+...+.-+.+|-+...
T Consensus 182 gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 182 GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 99999999999887 7888888888888999988774
No 247
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.39 E-value=4.2e-10 Score=106.60 Aligned_cols=265 Identities=12% Similarity=0.123 Sum_probs=154.1
Q ss_pred eEEEecCCCcee-EEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 133 KHKTIIHPGEVN-RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 133 ~~~~~~h~~~V~-~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
....+...+.+. .+.|+| +++++.+++.||.|.++|+.+. +.+..+..-.. ..+++++++|+++
T Consensus 28 ~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~------------~~v~~i~~G~~--~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATG------------KVVATIKVGGN--PRGIAVSPDGKYV 92 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSS------------SEEEEEE-SSE--EEEEEE--TTTEE
T ss_pred EEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcc------------cEEEEEecCCC--cceEEEcCCCCEE
Confidence 445555555554 356777 8888888899999999999988 45555554443 4799999999988
Q ss_pred EEec-CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 212 LSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 212 ~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
+++. ..+.+.++|.++.+......... .........+.++..+|..
T Consensus 93 ~v~n~~~~~v~v~D~~tle~v~~I~~~~---------------------------------~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 93 YVANYEPGTVSVIDAETLEPVKTIPTGG---------------------------------MPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp EEEEEETTEEEEEETTT--EEEEEE--E---------------------------------E-TTTS---EEEEEE-SSS
T ss_pred EEEecCCCceeEeccccccceeeccccc---------------------------------ccccccCCCceeEEecCCC
Confidence 8665 68999999997654322111100 0001134567888888888
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEE-eCCCcEEEEecCCCCC-----------
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTS----------- 358 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tg-s~dg~I~iwd~~~~~~----------- 358 (479)
+.++++.-+-+.|.+-|........... ...........|+| +++|++++ ..+..|-++|..+...
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~~~~~~~-i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~ 217 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPKNLKVTT-IKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPH 217 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSSCEEEEE-EE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBE
T ss_pred CEEEEEEccCCeEEEEEeccccccceee-ecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeecccccc
Confidence 5566666666899999988765322233 34455677899999 88876654 4466777887765210
Q ss_pred --------------------------------------CCCCCceeeecCCCCcEEEEEEecCCCcEEEE---EeCCCCE
Q 011709 359 --------------------------------------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS---SAEDGLL 397 (479)
Q Consensus 359 --------------------------------------~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas---~s~Dg~v 397 (479)
....+.+.++.....+ ..+..||+++++.+. +...++|
T Consensus 218 ~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v 296 (369)
T PF02239_consen 218 PGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTV 296 (369)
T ss_dssp ETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-E
T ss_pred ccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceE
Confidence 0011222333333334 567789999987765 4556899
Q ss_pred EEEeCCCCCccccCCCCCCCCCCeeEEEe--CCCCCceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 398 NIWDYEKVGKKVEQGPRTTNYPAGLFFQH--AGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 398 ~iwd~~~~~~~~~~~~~~~~~~~~l~~~~--~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
.|+|.++. +..... .+...+..+.|+++|..+..+..+ .++.|.+|+...+
T Consensus 297 ~viD~~tl---------------~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~---~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 297 QVIDKKTL---------------KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWD---GNGAIVVYDAKTL 349 (369)
T ss_dssp EEEECCGT---------------EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE-----TTEEEEEETTTT
T ss_pred EEEECcCc---------------ceeEEEeccCCCcEeccEECCCCCEEEEEEec---CCCEEEEEECCCc
Confidence 99999884 222221 122337899999999977665542 1348999986654
No 248
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=3.6e-12 Score=121.97 Aligned_cols=272 Identities=18% Similarity=0.319 Sum_probs=189.0
Q ss_pred hhhhhhhhccccccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCce
Q 011709 52 PVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFV 131 (479)
Q Consensus 52 ~~~y~~~~~~~l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (479)
|+---..++|...|..-.+||.|.-... .|+.. + ....-.||++..... .-
T Consensus 55 p~~ppr~l~h~tpw~vad~qws~h~a~~-------~wiVs-t---s~qkaiiwnlA~ss~------------------~a 105 (1081)
T KOG0309|consen 55 PFTPPRWLHHITPWQVADVQWSPHPAKP-------YWIVS-T---SNQKAIIWNLAKSSS------------------NA 105 (1081)
T ss_pred CCCCceeeeccCcchhcceecccCCCCc-------eeEEe-c---CcchhhhhhhhcCCc------------------cc
Confidence 4444456788999999999999974333 12111 1 222334455432111 11
Q ss_pred eeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
-..-+-+|..+|+.+.|+|+.+.++|+++.|..+..||+.... .+......-.. .-..++|+-....+
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-----------~p~ys~~~w~s-~asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-----------RPFYSTSSWRS-AASQVKWNYKDPNV 173 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-----------cceeeeecccc-cCceeeecccCcch
Confidence 1344568999999999999999999999999999999998862 34444433332 24689999876666
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
+..+....|++||.+.+. .++..+++|...|+.++|...-.
T Consensus 174 lasshg~~i~vwd~r~gs---------------------------------------~pl~s~K~~vs~vn~~~fnr~~~ 214 (1081)
T KOG0309|consen 174 LASSHGNDIFVWDLRKGS---------------------------------------TPLCSLKGHVSSVNSIDFNRFKY 214 (1081)
T ss_pred hhhccCCceEEEeccCCC---------------------------------------cceEEecccceeeehHHHhhhhh
Confidence 666777889999997432 34577888999999999987655
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEE-EEEeCCCcEEEEecCCCCCC----CCCCcee
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSN----GVGSPIN 366 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l-~tgs~dg~I~iwd~~~~~~~----~~~~~~~ 366 (479)
..+.+++.||+|+.||.........+. .....+|..-.+-|+...++ .---.+..+.+++.++...+ ...++++
T Consensus 215 s~~~s~~~d~tvkfw~y~kSt~e~~~~-vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh 293 (1081)
T KOG0309|consen 215 SEIMSSSNDGTVKFWDYSKSTTESKRT-VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVH 293 (1081)
T ss_pred hhhcccCCCCceeeeccccccccccee-ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCccee
Confidence 678999999999999987655322222 24567788888888544333 32222346667766654322 1247899
Q ss_pred eecCCCCcEEEEEEecCC---------CcEEEEEeCCCCEEEEeCCC
Q 011709 367 KFEGHSAAVLCVQWSPDK---------SSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 367 ~~~~h~~~v~~l~~~p~~---------~~llas~s~Dg~v~iwd~~~ 404 (479)
.|.||.+.|....|-..+ .+.|+|-|.|.++++|-+..
T Consensus 294 ~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 294 TFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 999999999877776433 24678999999999999875
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.6e-10 Score=112.04 Aligned_cols=204 Identities=10% Similarity=0.087 Sum_probs=126.1
Q ss_pred cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC---CcEEEEecCCCccccccCCcccc
Q 011709 164 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAK 240 (479)
Q Consensus 164 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~ 240 (479)
.|.++|.+.. . ...+..+.. .+....|+|+|+.|+..+.+ ..|.+||+.++...
T Consensus 180 ~l~~~d~~g~------------~-~~~l~~~~~-~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~--------- 236 (430)
T PRK00178 180 TLQRSDYDGA------------R-AVTLLQSRE-PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE--------- 236 (430)
T ss_pred EEEEECCCCC------------C-ceEEecCCC-ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE---------
Confidence 4777787654 2 233444444 47899999999988776533 36888898754321
Q ss_pred cCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC--eEEEEeCCCCCCCceee
Q 011709 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKV 318 (479)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~ 318 (479)
.+....+.+....|+|+|..++++.+.+| .|.+||+.++. ...
T Consensus 237 --------------------------------~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~ 281 (430)
T PRK00178 237 --------------------------------QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---LSR 281 (430)
T ss_pred --------------------------------EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---eEE
Confidence 11112233446899999966555666665 68888998876 333
Q ss_pred eccCCCCeEEEEecCCCCcEEEEEeC-CC--cEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCC
Q 011709 319 EKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 395 (479)
Q Consensus 319 ~~~~~~~v~~l~~sp~~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg 395 (479)
+..+........|+| ++..|+..+. +| .|+++|+.. +. ...+...........|+|+++.++.+...++
T Consensus 282 lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~------g~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~ 353 (430)
T PRK00178 282 VTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNG------GR-AERVTFVGNYNARPRLSADGKTLVMVHRQDG 353 (430)
T ss_pred cccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCC------CC-EEEeecCCCCccceEECCCCCEEEEEEccCC
Confidence 445555667789999 7776665554 44 466677765 33 2222222223345789999997655554444
Q ss_pred --CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 396 --LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 396 --~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
.|.+||+..+.. ..+ ... . ......|+|+|+.++.+..
T Consensus 354 ~~~l~~~dl~tg~~-------------~~l-t~~-~-~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 354 NFHVAAQDLQRGSV-------------RIL-TDT-S-LDESPSVAPNGTMLIYATR 393 (430)
T ss_pred ceEEEEEECCCCCE-------------EEc-cCC-C-CCCCceECCCCCEEEEEEe
Confidence 477888876311 111 111 1 1235689999999887665
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=6.5e-10 Score=108.92 Aligned_cols=200 Identities=12% Similarity=0.091 Sum_probs=119.4
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeC-CC--cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTD-SP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
...+...+...+|+| +++.||..+. ++ .|++||+.++.. ..+....+ .....+|+|+|+.|+
T Consensus 213 l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~-------------~~lt~~~g-~~~~~~wSPDG~~La 277 (448)
T PRK04792 213 LLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVR-------------EKVTSFPG-INGAPRFSPDGKKLA 277 (448)
T ss_pred eecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCe-------------EEecCCCC-CcCCeeECCCCCEEE
Confidence 345677889999999 6666666543 33 588889887621 11111121 234789999999776
Q ss_pred E-ecCCCc--EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC
Q 011709 213 S-GGKDKS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (479)
Q Consensus 213 s-~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (479)
. .+.+|. |.++|+.++.. ..+..+........|+|+
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~~-----------------------------------------~~lt~~~~~~~~p~wSpD 316 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKAL-----------------------------------------TRITRHRAIDTEPSWHPD 316 (448)
T ss_pred EEEeCCCCeEEEEEECCCCCe-----------------------------------------EECccCCCCccceEECCC
Confidence 4 556665 66667654322 222233445567899999
Q ss_pred CCcEEEEEecCC--eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC-CC--cEEEEecCCCCCCCCCCc
Q 011709 290 SAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSP 364 (479)
Q Consensus 290 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg--~I~iwd~~~~~~~~~~~~ 364 (479)
+..++++...++ .|.++|+.+++ ... +..........+|+| ++++|+..+. ++ .|.++|+.. +..
T Consensus 317 G~~I~f~s~~~g~~~Iy~~dl~~g~--~~~-Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~------g~~ 386 (448)
T PRK04792 317 GKSLIFTSERGGKPQIYRVNLASGK--VSR-LTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLET------GAM 386 (448)
T ss_pred CCEEEEEECCCCCceEEEEECCCCC--EEE-EecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCC------CCe
Confidence 965555555454 46666777666 222 222222334579999 8877776655 44 455567665 322
Q ss_pred eeeecCCCCcEEEEEEecCCCcEEEEEeCCCC--EEEEeCC
Q 011709 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYE 403 (479)
Q Consensus 365 ~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~--v~iwd~~ 403 (479)
..+... .......|+|+++.++.+...+|. +.++++.
T Consensus 387 -~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 387 -QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred -EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 223222 122245799999987766666665 5566653
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=5e-10 Score=109.78 Aligned_cols=201 Identities=12% Similarity=0.153 Sum_probs=127.0
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCc
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~ 210 (479)
.+...+.+.+...+|+| +++.||.++.+ ..|++||+.++. . ..+..+.. .+.+++|+|+|+.
T Consensus 183 ~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~------------~-~~~~~~~~-~~~~~~~spDg~~ 247 (417)
T TIGR02800 183 QTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQ------------R-EKVASFPG-MNGAPAFSPDGSK 247 (417)
T ss_pred EEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCC------------E-EEeecCCC-CccceEECCCCCE
Confidence 34455667789999999 77777776543 479999998762 1 12233333 3567899999987
Q ss_pred EE-EecCCC--cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 211 VL-SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 211 l~-s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
|+ +.+.++ .|.+||+.++.. ..+..+........|+
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~s 286 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-----------------------------------------TRLTNGPGIDTEPSWS 286 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-----------------------------------------EECCCCCCCCCCEEEC
Confidence 65 445444 588888865322 1122233334466899
Q ss_pred eCCCcEEEEEecCC--eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC---cEEEEecCCCCCCCCC
Q 011709 288 PSSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVG 362 (479)
Q Consensus 288 ~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg---~I~iwd~~~~~~~~~~ 362 (479)
|++..++++...++ .|.++|+.+++ ...+..+...+..+.|+| ++.+|+.++.++ .|.+||+.. +
T Consensus 287 ~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~------~ 356 (417)
T TIGR02800 287 PDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDG------G 356 (417)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCC------C
Confidence 99854444444444 57778887665 233334556677899999 888888888776 788899876 2
Q ss_pred CceeeecCCCCcEEEEEEecCCCcEEEEEeCCCC--EEEEeC
Q 011709 363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDY 402 (479)
Q Consensus 363 ~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~--v~iwd~ 402 (479)
. ...+... .......|+|++++++++...++. +.+.+.
T Consensus 357 ~-~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 357 G-ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred C-eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 2 2223222 223456899999976655554443 444443
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.4e-09 Score=106.75 Aligned_cols=202 Identities=10% Similarity=0.085 Sum_probs=123.3
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCc
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~ 210 (479)
.....+...+...+|+| +++.||..+.+ ..|.+||+.++... .+....+ .+....|+|+|+.
T Consensus 192 ~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~-------------~l~~~~g-~~~~~~~SpDG~~ 256 (430)
T PRK00178 192 VTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRRE-------------QITNFEG-LNGAPAWSPDGSK 256 (430)
T ss_pred eEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEE-------------EccCCCC-CcCCeEECCCCCE
Confidence 33456777899999999 66777665543 36999999876211 1111222 2457899999997
Q ss_pred EE-EecCCC--cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 211 VL-SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 211 l~-s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
|+ +.+.+| .|.+||+.++.. ..+..+........|+
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~-----------------------------------------~~lt~~~~~~~~~~~s 295 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQL-----------------------------------------SRVTNHPAIDTEPFWG 295 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCe-----------------------------------------EEcccCCCCcCCeEEC
Confidence 76 455555 577778865422 1222233445567899
Q ss_pred eCCCcEEEEEecCC--eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC-C--cEEEEecCCCCCCCCC
Q 011709 288 PSSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-N--SVRMFDRRNLTSNGVG 362 (479)
Q Consensus 288 ~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d-g--~I~iwd~~~~~~~~~~ 362 (479)
|++..++++...+| .|.++|+.+++ ... +...........|+| ++++|+..+.+ + .|.+||+.. +
T Consensus 296 pDg~~i~f~s~~~g~~~iy~~d~~~g~--~~~-lt~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~t------g 365 (430)
T PRK00178 296 KDGRTLYFTSDRGGKPQIYKVNVNGGR--AER-VTFVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQR------G 365 (430)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCC--EEE-eecCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCC------C
Confidence 99965555554444 57777877766 222 211222334678999 88888776653 3 588889876 3
Q ss_pred CceeeecCCCCcEEEEEEecCCCcEEEEEeCCCC--EEEEeCC
Q 011709 363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYE 403 (479)
Q Consensus 363 ~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~--v~iwd~~ 403 (479)
. ...+.. ........|+|+|+.++.+...+|. +.++++.
T Consensus 366 ~-~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 366 S-VRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred C-EEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 2 222221 2222356899999987666655544 5555553
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.35 E-value=5.5e-11 Score=104.33 Aligned_cols=202 Identities=14% Similarity=0.170 Sum_probs=142.6
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCc
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~ 219 (479)
+.+++++.|.+ ....|+.|-..|++.-+.+...-.. .........|.. .+..+-|+....++++.+.|..
T Consensus 68 P~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnk--------m~~~r~~~~h~~-~v~~~if~~~~e~V~s~~~dk~ 137 (404)
T KOG1409|consen 68 PSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNK--------MTFLKDYLAHQA-RVSAIVFSLTHEWVLSTGKDKQ 137 (404)
T ss_pred CCCceEeeeec-cceEEEEEEecceEEEEEhhhhhhh--------cchhhhhhhhhc-ceeeEEecCCceeEEEeccccc
Confidence 56789999998 7789999999999999877654211 134455667776 5899999988889999999987
Q ss_pred EEEEecCCCccccccCCcccccCCCCCc--eeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGS--IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
+.---.+.+... ..............+ ........+.....-.......++..+.+|...+.+++|.+.. .++++|
T Consensus 138 ~~~hc~e~~~~l-g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg 215 (404)
T KOG1409|consen 138 FAWHCTESGNRL-GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSG 215 (404)
T ss_pred eEEEeeccCCcc-cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEec
Confidence 653323222111 000000000111111 2222222233333333445566778999999999999999977 789999
Q ss_pred ecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
..|..+.+||+.-++. ....+.+|...|..+...+ .-..+.+++.||.|-+||++.
T Consensus 216 ~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cccCceEEEeccCCcc-eeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEeccc
Confidence 9999999999987664 3556679999999999988 788999999999999999875
No 254
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.35 E-value=4e-12 Score=110.70 Aligned_cols=227 Identities=12% Similarity=0.173 Sum_probs=152.0
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE-EecCCCcEEEEe
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWS 224 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~-s~s~dg~i~vwd 224 (479)
..|+| +++++|+++.- .+.|-|..+-+ ..+.+.-- + .|.-+.|..+..+++ ....|+.|.+|+
T Consensus 14 c~fSp-~g~yiAs~~~y-rlviRd~~tlq------------~~qlf~cl-d-ki~yieW~ads~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 14 CSFSP-CGNYIASLSRY-RLVIRDSETLQ------------LHQLFLCL-D-KIVYIEWKADSCHILCVAYKDPKVQVWS 77 (447)
T ss_pred eeECC-CCCeeeeeeee-EEEEeccchhh------------HHHHHHHH-H-HhhheeeeccceeeeeeeeccceEEEEE
Confidence 46788 99999999876 78888887752 11111111 1 256788988877655 456788999999
Q ss_pred cCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEE
Q 011709 225 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI 304 (479)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 304 (479)
+....-. ..+.....++.++.|+|+|..++.+..-|-.|.
T Consensus 78 l~Qpew~----------------------------------------ckIdeg~agls~~~WSPdgrhiL~tseF~lriT 117 (447)
T KOG4497|consen 78 LVQPEWY----------------------------------------CKIDEGQAGLSSISWSPDGRHILLTSEFDLRIT 117 (447)
T ss_pred eecceeE----------------------------------------EEeccCCCcceeeeECCCcceEeeeecceeEEE
Confidence 9753321 233345667899999999988888888999999
Q ss_pred EEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCC
Q 011709 305 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384 (479)
Q Consensus 305 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 384 (479)
+|.+.+.+. . .+......+..++|+| ++++.+..+.-.....+.+..-+. ...+..+...+-..+.+.|+|||
T Consensus 118 VWSL~t~~~--~-~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~---W~ll~~f~~dT~DltgieWsPdg 190 (447)
T KOG4497|consen 118 VWSLNTQKG--Y-LLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKA---WILLKEFKLDTIDLTGIEWSPDG 190 (447)
T ss_pred EEEecccee--E-EecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHH---HHHHHhcCCCcccccCceECCCC
Confidence 999998772 2 2223344568899999 999998887642222222211000 33455566666678899999999
Q ss_pred CcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 385 ~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.. || |||---. ..++......++..++|+|-+++|+.|+. |+.+|+-+..
T Consensus 191 ~~-la---------Vwd~~Le---------------ykv~aYe~~lG~k~v~wsP~~qflavGsy-----D~~lrvlnh~ 240 (447)
T KOG4497|consen 191 NW-LA---------VWDNVLE---------------YKVYAYERGLGLKFVEWSPCNQFLAVGSY-----DQMLRVLNHF 240 (447)
T ss_pred cE-EE---------Eecchhh---------------heeeeeeeccceeEEEeccccceEEeecc-----chhhhhhcee
Confidence 85 43 4542211 01111111244788999999999999999 9999887544
Q ss_pred c
Q 011709 465 E 465 (479)
Q Consensus 465 ~ 465 (479)
+
T Consensus 241 t 241 (447)
T KOG4497|consen 241 T 241 (447)
T ss_pred e
Confidence 3
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=5.2e-10 Score=109.61 Aligned_cols=204 Identities=12% Similarity=0.144 Sum_probs=121.9
Q ss_pred cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC-CC--cEEEEecCCCccccccCCcccc
Q 011709 164 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DK--SVVLWSIQDHITSSATDPATAK 240 (479)
Q Consensus 164 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~ 240 (479)
.|.++|.... .. ..+..+.. .+....|+|||+.|+..+. ++ .|.+||+.++...
T Consensus 199 ~l~i~d~dG~------------~~-~~l~~~~~-~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--------- 255 (448)
T PRK04792 199 QLMIADYDGY------------NE-QMLLRSPE-PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--------- 255 (448)
T ss_pred EEEEEeCCCC------------Cc-eEeecCCC-cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE---------
Confidence 6777777654 11 22333333 4778999999998886653 33 5888888654221
Q ss_pred cCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCe--EEEEeCCCCCCCceee
Q 011709 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKV 318 (479)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~ 318 (479)
.+..........+|+|+|..++++.+.+|. |.++|+.++. ...
T Consensus 256 --------------------------------~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---~~~ 300 (448)
T PRK04792 256 --------------------------------KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---LTR 300 (448)
T ss_pred --------------------------------EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---eEE
Confidence 111112223467999999666666777775 7778888766 334
Q ss_pred eccCCCCeEEEEecCCCCcEEEEEeC-CCc--EEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCC
Q 011709 319 EKAHDADLHCVDWNPLDDNLILTGSA-DNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 395 (479)
Q Consensus 319 ~~~~~~~v~~l~~sp~~~~~l~tgs~-dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg 395 (479)
+..+.......+|+| ++..|+..+. ++. |+++|+.. ++ ...+..+.......+|+|+|++++.+...++
T Consensus 301 lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~------g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g 372 (448)
T PRK04792 301 ITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLAS------GK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNG 372 (448)
T ss_pred CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC------CC-EEEEecCCCCCcCeeECCCCCEEEEEEecCC
Confidence 445555667899999 8877765554 444 66666654 33 2233222223445789999998766555555
Q ss_pred CE--EEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 396 LL--NIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 396 ~v--~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
.. .++|+..+. . ..+. .+ .......|+|+|+.|+....
T Consensus 373 ~~~I~~~dl~~g~-~------------~~lt--~~-~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 373 KFNIARQDLETGA-M------------QVLT--ST-RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred ceEEEEEECCCCC-e------------EEcc--CC-CCCCCceECCCCCEEEEEEe
Confidence 44 446665521 1 1111 11 11234579999998877554
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2.2e-10 Score=107.69 Aligned_cols=209 Identities=11% Similarity=0.143 Sum_probs=147.5
Q ss_pred CCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEE
Q 011709 206 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (479)
Q Consensus 206 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (479)
|...++|....||.+|+||...+.....+.+.... .++.....+.. ..........++.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~--s~t~~~~~w~L-------------------~~~~s~~k~~~~~ 61 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL--SGTCTYTKWGL-------------------SADYSPMKWLSLE 61 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhc--cCcceeEEEEE-------------------EeccchHHHHhHH
Confidence 34568899999999999999877655444331110 00000000000 0000000011111
Q ss_pred E---eeCCCcEEEEEecCCeEEEEeCCCCCCCceeee--ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 011709 286 F---CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (479)
Q Consensus 286 ~---~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~ 360 (479)
+ ...+...++-|...|.|.+|++..++ +...+ ..|.+.|+++.++. +...|.+++.|+.+..|+...
T Consensus 62 ~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~--it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~----- 133 (541)
T KOG4547|consen 62 KAKKASLDTSMLVLGTPQGSVLLYSVAGGE--ITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE----- 133 (541)
T ss_pred HHhhccCCceEEEeecCCccEEEEEecCCe--EEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEeccc-----
Confidence 1 01133568888999999999999988 33333 47999999999998 889999999999999999998
Q ss_pred CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEec
Q 011709 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVL 439 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp 439 (479)
...+..+......+.+++.+||+. ++++++ +.|++||+++. +++....||.. +.++.|--
T Consensus 134 -~~~~~~~~~~~~~~~sl~is~D~~-~l~~as--~~ik~~~~~~k---------------evv~~ftgh~s~v~t~~f~~ 194 (541)
T KOG4547|consen 134 -KVIIRIWKEQKPLVSSLCISPDGK-ILLTAS--RQIKVLDIETK---------------EVVITFTGHGSPVRTLSFTT 194 (541)
T ss_pred -ceeeeeeccCCCccceEEEcCCCC-EEEecc--ceEEEEEccCc---------------eEEEEecCCCcceEEEEEEE
Confidence 678888888888999999999988 566775 58999999984 77888899988 88899987
Q ss_pred C-----CCeeeecCCCccccceeEEEEeeccc
Q 011709 440 R-----ESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 440 ~-----~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
+ |.+++++... +.-|.+|.....
T Consensus 195 ~~~g~~G~~vLssa~~----~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 195 LIDGIIGKYVLSSAAA----ERGITVWVVEKE 222 (541)
T ss_pred eccccccceeeecccc----ccceeEEEEEcc
Confidence 6 6777777664 667777765543
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.7e-09 Score=98.92 Aligned_cols=133 Identities=17% Similarity=0.296 Sum_probs=93.0
Q ss_pred eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEE--EeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEE
Q 011709 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT--GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379 (479)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~t--gs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~ 379 (479)
++++.++.... ......-.++|.++.|+| ++.-+++ |-.=.++.|||++ +.++..+. .++-+++-
T Consensus 252 ~Lyll~t~g~s---~~V~L~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr-------~~~v~df~--egpRN~~~ 318 (566)
T KOG2315|consen 252 TLYLLATQGES---VSVPLLKEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLR-------GKPVFDFP--EGPRNTAF 318 (566)
T ss_pred eEEEEEecCce---EEEecCCCCCceEEEECC-CCCEEEEEEecccceEEEEcCC-------CCEeEeCC--CCCccceE
Confidence 55566655222 222223478999999999 7755544 4456799999998 47777664 67888999
Q ss_pred EecCCCcEEEEEeC---CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCC-ccccc
Q 011709 380 WSPDKSSVFGSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHG-LSYAN 455 (479)
Q Consensus 380 ~~p~~~~llas~s~---Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~-~~~~d 455 (479)
|+|.|+.+ +.+|. -|.|-|||+.+ .+++..... ..-+-+.|+|||.+++++... ....|
T Consensus 319 fnp~g~ii-~lAGFGNL~G~mEvwDv~n-~K~i~~~~a---------------~~tt~~eW~PdGe~flTATTaPRlrvd 381 (566)
T KOG2315|consen 319 FNPHGNII-LLAGFGNLPGDMEVWDVPN-RKLIAKFKA---------------ANTTVFEWSPDGEYFLTATTAPRLRVD 381 (566)
T ss_pred ECCCCCEE-EEeecCCCCCceEEEeccc-hhhcccccc---------------CCceEEEEcCCCcEEEEEeccccEEec
Confidence 99999964 45555 48999999988 343332221 223678999999999987764 35568
Q ss_pred eeEEEEeec
Q 011709 456 KKIKIYCHL 464 (479)
Q Consensus 456 ~~i~i~~~~ 464 (479)
+.++||...
T Consensus 382 Ng~Kiwhyt 390 (566)
T KOG2315|consen 382 NGIKIWHYT 390 (566)
T ss_pred CCeEEEEec
Confidence 999999643
No 258
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.28 E-value=1.8e-10 Score=97.35 Aligned_cols=264 Identities=17% Similarity=0.210 Sum_probs=150.0
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEE
Q 011709 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~v 222 (479)
|..+.++. ...|+++-.++.+......++.+...........+...+..|++ +-.+-+.+-.++.++++..||.+.+
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~se-p~p~~~~s~~~t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSE-IDPNDACTMTDNRVCIGYADGSLAV 115 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCC-CCCcccccccCCceEecCCCceEEE
Confidence 44444443 34677776666665555544322221111112244455555554 2334444445678999999999999
Q ss_pred EecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE-----
Q 011709 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV----- 297 (479)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~----- 297 (479)
++.+.........+ ..|.+ -.+.+....+ +++.++
T Consensus 116 ~s~~~~~~~~~~i~--------------------------------------~~~~~-~as~~~~~~~-~~i~s~~~g~~ 155 (319)
T KOG4714|consen 116 FSTDKDLALMSRIP--------------------------------------SIHSG-SASRKICRHG-NSILSGGCGNW 155 (319)
T ss_pred EechHHHhhhhhcc--------------------------------------ccccc-ccccceeecc-cEEecCCcceE
Confidence 99864111000000 00111 1111222222 222221
Q ss_pred ecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEE
Q 011709 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 377 (479)
..-+..+.|+++..+. ..........|.+++-+|...+++++|+.||.+.+||.|+. ..++..+..|+.+++.
T Consensus 156 n~~d~~~a~~~~p~~t--~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-----~~p~S~l~ahk~~i~e 228 (319)
T KOG4714|consen 156 NAQDNFYANTLDPIKT--LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-----AMPVSLLKAHKAEIWE 228 (319)
T ss_pred eeccceeeeccccccc--ccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc-----cchHHHHHHhhhhhhh
Confidence 1223456677765442 11111222349999999977889999999999999999985 2577788999999999
Q ss_pred EEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCC-------CCCCCeeEEEeCCCCCcee---EEEecCCCeeeec
Q 011709 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-------TNYPAGLFFQHAGHSPSSS---IKFVLRESCLVDN 447 (479)
Q Consensus 378 l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~-------~~~~~~l~~~~~gh~~~~~---~~~sp~~~~l~~~ 447 (479)
+.|+|..+.-|.+++.||.+..||.+.. .+...... ...|..-.....+-.+-.. =.|.-.|.+|++|
T Consensus 229 V~FHpk~p~~Lft~sedGslw~wdas~~--~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcg 306 (319)
T KOG4714|consen 229 VHFHPKNPEHLFTCSEDGSLWHWDASTT--FLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCG 306 (319)
T ss_pred eeccCCCchheeEecCCCcEEEEcCCCc--eEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEec
Confidence 9999986655669999999999998841 11111100 0111111122222222112 2344578999999
Q ss_pred CCCccccceeEEEEee
Q 011709 448 NHGLSYANKKIKIYCH 463 (479)
Q Consensus 448 ~~~~~~~d~~i~i~~~ 463 (479)
++ -+-|.+++.
T Consensus 307 td-----~eaIyl~~~ 317 (319)
T KOG4714|consen 307 TD-----AEAIYLTRH 317 (319)
T ss_pred cc-----cceEEEecc
Confidence 99 788887753
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=2.5e-10 Score=113.91 Aligned_cols=200 Identities=16% Similarity=0.123 Sum_probs=144.8
Q ss_pred eeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCC
Q 011709 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (479)
+....+.-....++.+..+..+.+||............. .+..+
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~--------------------------------er~~l---- 133 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSD--------------------------------ERCTL---- 133 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCC--------------------------------ceEEE----
Confidence 344445556677888888899999998754332111000 00000
Q ss_pred CceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCC
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~ 358 (479)
....-+.++++. -++++|+--+.|.+|+......+ . .+.+|.+.|.++.|+- ++.++++.|+|.++|+|++.+..
T Consensus 134 ~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p-~-~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~- 208 (967)
T KOG0974|consen 134 YSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKP-I-RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSRE- 208 (967)
T ss_pred EeEEEEeccCcE-EEEEeccccccEEEEeccccCCc-c-eecccCCceEEEEEcc-CCcEEEEEecCcceeeeeccccc-
Confidence 011122334443 67899999999999999854432 2 5679999999999999 99999999999999999999832
Q ss_pred CCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC--ceeEE
Q 011709 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP--SSSIK 436 (479)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~--~~~~~ 436 (479)
......-+|+..|..+.|+|. .++|++.|.+.++|+..-. + +-+..+|.. +-.++
T Consensus 209 ----~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~---------------~-l~~y~~h~g~~iw~~~ 265 (967)
T KOG0974|consen 209 ----VLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGT---------------Q-LEVYDEHSGKGIWKIA 265 (967)
T ss_pred ----ccCcccccccceeEEEEeccc---eeEEeccceEEEEEecccc---------------e-ehhhhhhhhcceeEEE
Confidence 122366789999999999998 3679999999999966541 1 115556655 78899
Q ss_pred EecCCCeeeecCCCccccceeEEEEeecccc
Q 011709 437 FVLRESCLVDNNHGLSYANKKIKIYCHLEAL 467 (479)
Q Consensus 437 ~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~ 467 (479)
..++...++++++ |+.+++|+.....
T Consensus 266 ~~~~~~~~vT~g~-----Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 266 VPIGVIIKVTGGN-----DSTLKLWDLNGRG 291 (967)
T ss_pred EcCCceEEEeecc-----Ccchhhhhhhccc
Confidence 9999999999999 9999999765553
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=4.9e-09 Score=101.95 Aligned_cols=164 Identities=12% Similarity=0.107 Sum_probs=94.1
Q ss_pred CceEEEEEeeCCCcEEEEEecCC----eEEEEeCCCCC-CCceeeeccCCCCeEEEEecCCCCcEEEEEe-CCCcEEEEe
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFD 352 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs-~dg~I~iwd 352 (479)
+.....+|+|+|..++++...+| .+.+||+..+. .........+.......+|+| +|..|+..+ .+|...||.
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEE
Confidence 33456799999965555554333 45557776532 112223222333456789999 888777655 467655554
Q ss_pred cCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC--CCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC
Q 011709 353 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS 430 (479)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D--g~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~ 430 (479)
+..... +.....+..+...+....|+|+|+.|+.++..+ ..|.+||+..+.. ..+. .+..
T Consensus 310 ~~~~~~---g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-------------~~Lt--~~~~ 371 (428)
T PRK01029 310 MQIDPE---GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-------------YQLT--TSPE 371 (428)
T ss_pred EECccc---ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-------------EEcc--CCCC
Confidence 432100 123344544556677899999999765454433 3689999987421 1111 1122
Q ss_pred CceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 431 PSSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 431 ~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
.+....|+|||+.|+..... .....|.+++.
T Consensus 372 ~~~~p~wSpDG~~L~f~~~~--~g~~~L~~vdl 402 (428)
T PRK01029 372 NKESPSWAIDSLHLVYSAGN--SNESELYLISL 402 (428)
T ss_pred CccceEECCCCCEEEEEECC--CCCceEEEEEC
Confidence 35678999999987754331 01345666654
No 261
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.23 E-value=1.2e-08 Score=96.74 Aligned_cols=190 Identities=9% Similarity=0.090 Sum_probs=124.5
Q ss_pred cEE-EEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCcccc
Q 011709 154 KIV-ATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 232 (479)
Q Consensus 154 ~~l-at~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~ 232 (479)
+++ ++-..++.|.|.|..+. +.+..+..... .-..+.|+|||+++++++.||.|.++|+.+.+..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~------------~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v- 71 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATN------------KVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV- 71 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-------------SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE-
T ss_pred cEEEEEecCCCEEEEEECCCC------------eEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE-
Confidence 344 56667899999999887 55666665443 2346789999999999999999999999765432
Q ss_pred ccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCC
Q 011709 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT 312 (479)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 312 (479)
..+.. .....+++++++|..+++++..++.+.++|.++.+
T Consensus 72 ---------------------------------------~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 72 ---------------------------------------ATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp ---------------------------------------EEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred ---------------------------------------EEEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence 23332 23467899999996556666789999999999987
Q ss_pred CCceeeecc-------CCCCeEEEEecCCCCc-EEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCC
Q 011709 313 SPVIKVEKA-------HDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384 (479)
Q Consensus 313 ~~~~~~~~~-------~~~~v~~l~~sp~~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 384 (479)
.+..... ....+.++..+| ... ++++--+-+.|.+.|..... .+...............|+|++
T Consensus 112 --~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~-----~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 112 --PVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPK-----NLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSS-----CEEEEEEE--TTEEEEEE-TTS
T ss_pred --ceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEecccc-----ccceeeecccccccccccCccc
Confidence 5554432 234677888888 555 55555555889988987632 1222222244567789999999
Q ss_pred CcEEEEEeCCCCEEEEeCCCC
Q 011709 385 SSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 385 ~~llas~s~Dg~v~iwd~~~~ 405 (479)
++++++...+..|-++|..+.
T Consensus 184 ry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTT
T ss_pred ceeeecccccceeEEEeeccc
Confidence 988777666778999998874
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=5.4e-09 Score=101.68 Aligned_cols=205 Identities=11% Similarity=0.124 Sum_probs=119.8
Q ss_pred CCCceeEEEecCCCCc---EEEEEeCCC--cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 139 HPGEVNRIRELPQNTK---IVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~---~lat~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
..+.+..-+|+| +++ ++++...+| .|++.++.++.. + .+....+ .....+|+|||+.|+.
T Consensus 183 ~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~----------~---~lt~~~g-~~~~p~wSPDG~~Laf 247 (428)
T PRK01029 183 EHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAG----------K---KILALQG-NQLMPTFSPRKKLLAF 247 (428)
T ss_pred CCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCc----------e---EeecCCC-CccceEECCCCCEEEE
Confidence 344566779999 544 223444443 677888877621 1 1222222 2357899999998876
Q ss_pred ecC-CC----cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee
Q 011709 214 GGK-DK----SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 214 ~s~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (479)
.+. +| .+.+|++..+.. ..+.....++.......+|+|
T Consensus 248 ~s~~~g~~di~~~~~~~~~g~~-------------------------------------g~~~~lt~~~~~~~~~p~wSP 290 (428)
T PRK01029 248 ISDRYGNPDLFIQSFSLETGAI-------------------------------------GKPRRLLNEAFGTQGNPSFSP 290 (428)
T ss_pred EECCCCCcceeEEEeecccCCC-------------------------------------CcceEeecCCCCCcCCeEECC
Confidence 542 23 334455543110 011122222223345679999
Q ss_pred CCCcEEEEEecCCeEEEEe--CCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC---CcEEEEecCCCCCCCCCC
Q 011709 289 SSAQEFCSVGDDSCLILWD--ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGS 363 (479)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~ 363 (479)
+|..++++...+|...+|. +..... ....+..+...+....|+| +++.|+..+.+ ..|.+||+.. ++
T Consensus 291 DG~~Laf~s~~~g~~~ly~~~~~~~g~-~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~------g~ 362 (428)
T PRK01029 291 DGTRLVFVSNKDGRPRIYIMQIDPEGQ-SPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT------GR 362 (428)
T ss_pred CCCEEEEEECCCCCceEEEEECccccc-ceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC------CC
Confidence 9965555555677655554 432111 1333444455677899999 88887766543 3699999986 33
Q ss_pred ceeeecCCCCcEEEEEEecCCCcEEEEEeC--CCCEEEEeCCC
Q 011709 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEK 404 (479)
Q Consensus 364 ~~~~~~~h~~~v~~l~~~p~~~~llas~s~--Dg~v~iwd~~~ 404 (479)
. ..+......+....|+|+|+.|+.++.. ...|.+||+..
T Consensus 363 ~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 363 D-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred e-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 3 3343334456789999999987656554 35678888876
No 263
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=2.1e-10 Score=99.38 Aligned_cols=301 Identities=16% Similarity=0.233 Sum_probs=174.6
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCC-----------CceeeeeecCCC
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-----------NAEFALAMCPTE 208 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~~v~~l~~s~~~ 208 (479)
...|+++.|.. .|.+||||...|.|.+|.-.... .. ..+....+.+|.. ..|..+.|..++
T Consensus 26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~-~c------eykf~teFQshe~EFDYLkSleieEKin~I~w~~~t 97 (460)
T COG5170 26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSY-GC------EYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT 97 (460)
T ss_pred cceeeEEEecc-ccceEeecCCCceEEEeeccccc-cc------chhhhhhhcccccchhhhhhccHHHHhhheeeecCC
Confidence 45689999988 88899999999999999765542 00 1122233444431 237888888764
Q ss_pred C--cEEEecCCCcEEEEecCCCccccccCCccccc-CCCCCceeecCCCCCCCCCCCCCCC------CCCCceee-cCCC
Q 011709 209 P--YVLSGGKDKSVVLWSIQDHITSSATDPATAKS-AGSSGSIIKQSPKPGDGNDKAADGP------SVGPRGIY-NGHE 278 (479)
Q Consensus 209 ~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~h~ 278 (479)
+ .++..+.|++|++|.+............-... ..+.. ++......+.+.... ...+.+.+ ..|.
T Consensus 98 ~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~-----g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~ 172 (460)
T COG5170 98 GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMG-----GPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP 172 (460)
T ss_pred CcceEEEecCCceeeeeeeecccchhhhccccccccccccC-----CCcCCHHHhhcccccccceEEEeccceeccccce
Confidence 3 56666779999999997653322111100000 00000 000000001110100 01122333 5688
Q ss_pred CceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCC-ceeeeccCC-----CCeEEEEecCCCCcEEEEEeCCCcEEEEe
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHD-----ADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~-----~~v~~l~~sp~~~~~l~tgs~dg~I~iwd 352 (479)
--|+++.|..+. ..+++ ++|-.|.+|.+...... .+--.+.|. .-|++..|+|...+.+.-.+..|.|++-|
T Consensus 173 yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D 250 (460)
T COG5170 173 YHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND 250 (460)
T ss_pred eEeeeeeecCch-heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence 889999999887 44554 57788999988764421 111122333 45889999997788899999999999999
Q ss_pred cCCCCC--CCC--------CCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCee
Q 011709 353 RRNLTS--NGV--------GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL 422 (479)
Q Consensus 353 ~~~~~~--~~~--------~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l 422 (479)
+|...- ... +.-..-+.+-...|..+.|+++|++++ +-+ =-+|+|||+++...++.+...+...-.++
T Consensus 251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l 328 (460)
T COG5170 251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDEL 328 (460)
T ss_pred hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Eec-cceEEEEecccccCCceeechHHHHHHHH
Confidence 995320 000 000111222345788999999999754 544 35899999999777665543221111111
Q ss_pred --EEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 423 --FFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 423 --~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
++....--..-.+.|+-|...+++|+. .+..-+|-
T Consensus 329 ~d~YEnDaifdkFeisfSgd~~~v~sgsy-----~NNfgiyp 365 (460)
T COG5170 329 NDVYENDAIFDKFEISFSGDDKHVLSGSY-----SNNFGIYP 365 (460)
T ss_pred HhhhhccceeeeEEEEecCCccccccccc-----ccceeeec
Confidence 112222222456788888888888876 45555553
No 264
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.20 E-value=5e-09 Score=89.23 Aligned_cols=197 Identities=11% Similarity=0.065 Sum_probs=132.8
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC-CCcEEEecCCCcEEEEecCCCcc
Q 011709 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHIT 230 (479)
Q Consensus 152 ~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~-~~~l~s~s~dg~i~vwd~~~~~~ 230 (479)
...+||.|+..|...+|...+.+.. ......|.. .|.-+.=..+ .-.+..++.|.++++.++.....
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h-----------~~~cd~snn-~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGH-----------LYQCDVSNN-DVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cccEEEeccccceeeeecccCcccc-----------eeeeccccc-chhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 4458999999999999999876211 111122221 1111110111 22466788899999998864322
Q ss_pred ccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCC--ceEEEEEeeCCCcEEEEEecCCeEEEEeC
Q 011709 231 SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED--TVEDVTFCPSSAQEFCSVGDDSCLILWDA 308 (479)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 308 (479)
. ...|.. .++++++++++ .++++.++...|-.|.+
T Consensus 151 ~------------------------------------------~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~i 187 (344)
T KOG4532|consen 151 K------------------------------------------FAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAI 187 (344)
T ss_pred c------------------------------------------ceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEe
Confidence 1 111322 37899999998 78999999999999999
Q ss_pred CCCCCCcee-eeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee----eecCCCCcEEEEEEecC
Q 011709 309 RVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN----KFEGHSAAVLCVQWSPD 383 (479)
Q Consensus 309 ~~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~----~~~~h~~~v~~l~~~p~ 383 (479)
.......+. ........-.+.+|+. ....+|++..||++.|||+|... .|.. +-..|.+++..+.|++.
T Consensus 188 d~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~-----tpm~~~sstrp~hnGa~R~c~Fsl~ 261 (344)
T KOG4532|consen 188 DDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMA-----TPMAEISSTRPHHNGAFRVCRFSLY 261 (344)
T ss_pred CCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccc-----cchhhhcccCCCCCCceEEEEecCC
Confidence 876543444 3334455567889998 88899999999999999999853 2322 23468999999999987
Q ss_pred CCc-EEEEEeCCCCEEEEeCCCCCccc
Q 011709 384 KSS-VFGSSAEDGLLNIWDYEKVGKKV 409 (479)
Q Consensus 384 ~~~-llas~s~Dg~v~iwd~~~~~~~~ 409 (479)
|.. ||.-.-.-+.+.|-|++.....+
T Consensus 262 g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 262 GLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred CcceEEEEecCcceEEEEEcccCceee
Confidence 653 33333346789999999965544
No 265
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=6.7e-10 Score=106.43 Aligned_cols=254 Identities=13% Similarity=0.180 Sum_probs=168.7
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccC---CCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL---GATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
++......|+.|+. ...+||+|+.||-++|-.+.+........ ........+++.||..+ |.-+.|+.+.+.|-+
T Consensus 11 iPnnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~s-V~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNAS-VMVVTWNENNQKLTT 88 (1189)
T ss_pred CCCCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcce-EEEEEeccccccccc
Confidence 34456789999999 67799999999999999887754322211 12233445678999985 899999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
...+|.|.||-+-.+.-.-. .+-....+.|.+++|..+| ..
T Consensus 89 SDt~GlIiVWmlykgsW~EE--------------------------------------MiNnRnKSvV~SmsWn~dG-~k 129 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEE--------------------------------------MINNRNKSVVVSMSWNLDG-TK 129 (1189)
T ss_pred cCCCceEEEEeeecccHHHH--------------------------------------HhhCcCccEEEEEEEcCCC-cE
Confidence 99999999998754321000 0011245678999999999 57
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC-CCCceee----e
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG-VGSPINK----F 368 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~-~~~~~~~----~ 368 (479)
++..-+||.|.+=.+...+ +.-..-.......+.|++ |...++.+-..|.+++||....-... ...+... +
T Consensus 130 IcIvYeDGavIVGsvdGNR---IwgKeLkg~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~ 205 (1189)
T KOG2041|consen 130 ICIVYEDGAVIVGSVDGNR---IWGKELKGQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF 205 (1189)
T ss_pred EEEEEccCCEEEEeeccce---ecchhcchheccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee
Confidence 8888999999887776544 111111112234789999 88888888899999999976411000 0011000 1
Q ss_pred cCCCCcEEEEEEe--------cCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecC
Q 011709 369 EGHSAAVLCVQWS--------PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLR 440 (479)
Q Consensus 369 ~~h~~~v~~l~~~--------p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~ 440 (479)
......|-.+.|. |+.+ .||.+-..|.+.|-.-.+ .|...++ ..| ..+..+.|+++
T Consensus 206 s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eN-------------D~~Pvv~-dtg-m~~vgakWnh~ 269 (1189)
T KOG2041|consen 206 SNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSEN-------------DPEPVVV-DTG-MKIVGAKWNHN 269 (1189)
T ss_pred cCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcC-------------CCCCeEE-ecc-cEeecceecCC
Confidence 1111224555553 4666 578888888887765443 2222333 333 56899999999
Q ss_pred CCeeeecCCCc
Q 011709 441 ESCLVDNNHGL 451 (479)
Q Consensus 441 ~~~l~~~~~~~ 451 (479)
|.+|+..|...
T Consensus 270 G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 270 GAVLAVCGNDS 280 (1189)
T ss_pred CcEEEEccCcc
Confidence 99999998754
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.16 E-value=3.5e-08 Score=105.73 Aligned_cols=283 Identities=12% Similarity=0.128 Sum_probs=155.6
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCC-CCCcEEE-eccCCCceeeeeecCCCCcEEEec-CCCcEE
Q 011709 145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATN-SRPDLIL-TGHQDNAEFALAMCPTEPYVLSGG-KDKSVV 221 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~-~~h~~~~v~~l~~s~~~~~l~s~s-~dg~i~ 221 (479)
.+++.+.++.++++-+.++.|++||........ ..+... ....-.+ ..+-. ...++++.++++.|+.+. .++.|+
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~-ig~~g~~G~~dG~~~~a~f~-~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQ-IGSTGEEGLRDGSFEDATFN-RPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEE-EccCCCcCCCCCchhccccC-CCcEEEEeCCCCEEEEEeCCCceEE
Confidence 466777677788888888999999986541110 000000 0000000 00111 236899999888665544 457899
Q ss_pred EEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC
Q 011709 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (479)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (479)
++|+.++......... ..+ ..+.......... -..-.+++++|++..++++.+.++
T Consensus 650 ~id~~~~~V~tlag~G------~~g--------------~~~~gg~~~~~~~----ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 650 EIDFVNETVRTLAGNG------TKG--------------SDYQGGKKGTSQV----LNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred EEecCCCEEEEEeccC------ccc--------------CCCCCChhhhHhh----cCCCeEEEEecCCCeEEEEECCCC
Confidence 9998654321100000 000 0000000000000 112358899996557888888999
Q ss_pred eEEEEeCCCCCCCceeeecc---------------CCCCeEEEEecCCCCc-EEEEEeCCCcEEEEecCCCCCCC--CC-
Q 011709 302 CLILWDARVGTSPVIKVEKA---------------HDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNG--VG- 362 (479)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~---------------~~~~v~~l~~sp~~~~-~l~tgs~dg~I~iwd~~~~~~~~--~~- 362 (479)
.|++||..++. +..+.+ .-.....|+++| ++. ++++-+.++.|++||+.+..... .+
T Consensus 706 ~I~v~d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 706 QIWEYNISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred eEEEEECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 99999998765 111111 112346799999 766 55666667999999987621000 00
Q ss_pred ----CceeeecCC--------CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC-
Q 011709 363 ----SPINKFEGH--------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH- 429 (479)
Q Consensus 363 ----~~~~~~~~h--------~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh- 429 (479)
..+..+..+ -....+++++++|. ++++-+.++.|++||.... ...........+...-. ...++
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg-~v~tiaG~G~~G~~dG~-~~~a~l 858 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATK-RVTTLAGTGKAGFKDGK-ALKAQL 858 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCC-eEEEEeccCCcCCCCCc-cccccc
Confidence 000011001 11346899999998 7888888999999998763 22111000000000000 00111
Q ss_pred CCceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 430 SPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 430 ~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
.....++++++|..+++... ++.|++|+...
T Consensus 859 ~~P~GIavd~dG~lyVaDt~-----Nn~Irvid~~~ 889 (1057)
T PLN02919 859 SEPAGLALGENGRLFVADTN-----NSLIRYLDLNK 889 (1057)
T ss_pred CCceEEEEeCCCCEEEEECC-----CCEEEEEECCC
Confidence 23688999999998777766 89999998654
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.3e-08 Score=93.55 Aligned_cols=281 Identities=16% Similarity=0.208 Sum_probs=166.5
Q ss_pred eeEEEecCCCceeEEEecCCCCcEEEEEeCC-----------CcEEEEECCCCCCccccCCCCCCCCcEEEeccCC-Cce
Q 011709 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDS-----------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-NAE 199 (479)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~~v 199 (479)
..++.+.|++ |.-+.|+| +.++|+|-+.. ..++|||+.++.... .+....+ ..+
T Consensus 242 ~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkr------------sF~~~~~~~~~ 307 (698)
T KOG2314|consen 242 DRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKR------------SFPVIKSPYLK 307 (698)
T ss_pred HHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhc------------ceeccCCCccc
Confidence 3677789986 89999999 88999987642 368999999994332 2222111 112
Q ss_pred -eeeeecCCCCcEEEecCCCcEEEEecCCCccc----cccCCcccccCCCCCceee-cCCCCCC--CCCCCCCCCCCCCc
Q 011709 200 -FALAMCPTEPYVLSGGKDKSVVLWSIQDHITS----SATDPATAKSAGSSGSIIK-QSPKPGD--GNDKAADGPSVGPR 271 (479)
Q Consensus 200 -~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~ 271 (479)
.-..||.|++++|.-.. ..|.|++..+-... ...........++...+++ +.+.... ..+.+...+..+.+
T Consensus 308 WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i 386 (698)
T KOG2314|consen 308 WPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI 386 (698)
T ss_pred cceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee
Confidence 24689999999987765 56888887653211 1111111222233233222 2222221 22223333444443
Q ss_pred eeecCCCCceEEEEEeeCCCcEEEE----------EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEE
Q 011709 272 GIYNGHEDTVEDVTFCPSSAQEFCS----------VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT 341 (479)
Q Consensus 272 ~~~~~h~~~v~~l~~~~~~~~~l~s----------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~t 341 (479)
++-.-|.-.=..+.|..+|+ +|+. .+.-..+-|+.++...-|+... .....|...+|.| .|+.+++
T Consensus 387 Rt~nlfnVsDckLhWQk~gd-yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v--elke~vi~FaWEP-~gdkF~v 462 (698)
T KOG2314|consen 387 RTKNLFNVSDCKLHWQKSGD-YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV--ELKESVIAFAWEP-HGDKFAV 462 (698)
T ss_pred eeccceeeeccEEEeccCCc-EEEEEEEeeccccccceEeeEEEEEeeccCCCceee--ecchheeeeeecc-CCCeEEE
Confidence 33333322223445656663 4432 1222346677777766443332 3567799999999 6666655
Q ss_pred EeCC---CcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEE--eCCCCEEEEeCCCCCccccCCCCCC
Q 011709 342 GSAD---NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTT 416 (479)
Q Consensus 342 gs~d---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~--s~Dg~v~iwd~~~~~~~~~~~~~~~ 416 (479)
-+.. .++.+|-+.... .....+..+.. ...+.+.|+|.|+.+++.+ |..|.+.++|+....
T Consensus 463 i~g~~~k~tvsfY~~e~~~--~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~---------- 528 (698)
T KOG2314|consen 463 ISGNTVKNTVSFYAVETNI--KKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD---------- 528 (698)
T ss_pred EEccccccceeEEEeecCC--Cchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhh----------
Confidence 4442 578999887421 11234555543 5678899999999754433 347889999987521
Q ss_pred CCCCeeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 417 NYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 417 ~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
.....+..|...+.+-|.|.|+++++++.
T Consensus 529 ----~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 529 ----LKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred ----hhhccCccccccccceECCCCCEEEEeee
Confidence 11224455777899999999999999876
No 268
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=3e-10 Score=105.75 Aligned_cols=221 Identities=14% Similarity=0.204 Sum_probs=155.0
Q ss_pred eeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCc
Q 011709 131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (479)
Q Consensus 131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~ 210 (479)
++.....+|...|..+.... +.+-+++++.|.+|++|.+....... ....+..++..|+. .|..+.|-.+.++
T Consensus 726 irL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~-----~tsaCQfTY~aHkk-~i~~igfL~~lr~ 798 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEI-----GTSACQFTYQAHKK-PIHDIGFLADLRS 798 (1034)
T ss_pred eeeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCcc-----ccceeeeEhhhccC-cccceeeeeccce
Confidence 44556679999999998776 77889999999999999998653222 23357788899997 5899999999888
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
++++ ||-|.+||.--+........ ..-.+..+.|.++.- -+.
T Consensus 799 i~Sc--D~giHlWDPFigr~Laq~~d-----------------------------------apk~~a~~~ikcl~n-v~~ 840 (1034)
T KOG4190|consen 799 IASC--DGGIHLWDPFIGRLLAQMED-----------------------------------APKEGAGGNIKCLEN-VDR 840 (1034)
T ss_pred eeec--cCcceeecccccchhHhhhc-----------------------------------CcccCCCceeEeccc-Ccc
Confidence 8877 79999999743221110000 000111122333321 122
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCceeee---ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceee
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~ 367 (479)
.-+++.|+...+|+++|.|...+.+.... .+.+..+.+++..| .|+.+++|-..|+|-+.|.|+ |..+..
T Consensus 841 ~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~------G~vINs 913 (1034)
T KOG4190|consen 841 HILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN------GKVINS 913 (1034)
T ss_pred hheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC------Cceecc
Confidence 23444457889999999999875433322 24456788999999 999999999999999999999 788888
Q ss_pred ecCCCCcEEEEEEecCCCcEEEEEeCCCCEEE-EeCCCC
Q 011709 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI-WDYEKV 405 (479)
Q Consensus 368 ~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~i-wd~~~~ 405 (479)
++.-......++ .|..+ .|+....|.++.| |....+
T Consensus 914 wrpmecdllqla-apsdq-~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 914 WRPMECDLLQLA-APSDQ-ALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred CCcccchhhhhc-CchhH-HHHhhcccceeEeeehhcCC
Confidence 877666666665 35555 3667777999998 876653
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=1.1e-07 Score=84.90 Aligned_cols=243 Identities=12% Similarity=0.190 Sum_probs=155.4
Q ss_pred CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC---CcEEEEecCCC--ccccccCC
Q 011709 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDH--ITSSATDP 236 (479)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d---g~i~vwd~~~~--~~~~~~~~ 236 (479)
+.-|++|++.+..... ....+..+.++ .+-|+|+|++++|.++-.+ |.|..|.++.. .......
T Consensus 15 s~gI~v~~ld~~~g~l---------~~~~~v~~~~n-ptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~- 83 (346)
T COG2706 15 SQGIYVFNLDTKTGEL---------SLLQLVAELGN-PTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR- 83 (346)
T ss_pred CCceEEEEEeCccccc---------chhhhccccCC-CceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-
Confidence 4579999998652221 11223333443 5899999999999887654 77888877642 1111000
Q ss_pred cccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe-cCCeEEEEeCCC-CCCC
Q 011709 237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARV-GTSP 314 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~ 314 (479)
..+.++ +-.-+++++++. +++++. ..|.|.++-++. +...
T Consensus 84 -----------------------------------~~~~g~--~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~ 125 (346)
T COG2706 84 -----------------------------------QTLPGS--PPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQ 125 (346)
T ss_pred -----------------------------------cccCCC--CCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccc
Confidence 112222 237789999994 555554 568999999976 3311
Q ss_pred ceeeeccCCCC----------eEEEEecCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecC
Q 011709 315 VIKVEKAHDAD----------LHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 383 (479)
Q Consensus 315 ~~~~~~~~~~~----------v~~l~~sp~~~~~l~tgs~d-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 383 (479)
.......|.+. +.+..+.| ++++|++.+-. -.|.+|++....-. ......+ .......-|.|+|+
T Consensus 126 ~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~--~~~~~~v-~~G~GPRHi~FHpn 201 (346)
T COG2706 126 PVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLT--PADPAEV-KPGAGPRHIVFHPN 201 (346)
T ss_pred cceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccc--ccccccc-CCCCCcceEEEcCC
Confidence 12122245444 88999999 89998888763 47999999852100 0111122 33456788999999
Q ss_pred CCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 384 ~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
++...+..-.+++|.+|........+.........|. ...|.....++..+|||++|.+...+ ..+|-+|.+
T Consensus 202 ~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~----dF~g~~~~aaIhis~dGrFLYasNRg----~dsI~~f~V 273 (346)
T COG2706 202 GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE----DFTGTNWAAAIHISPDGRFLYASNRG----HDSIAVFSV 273 (346)
T ss_pred CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc----ccCCCCceeEEEECCCCCEEEEecCC----CCeEEEEEE
Confidence 9987767777999999999885343333222222222 24555667899999999999999987 668888854
Q ss_pred cc
Q 011709 464 LE 465 (479)
Q Consensus 464 ~~ 465 (479)
..
T Consensus 274 ~~ 275 (346)
T COG2706 274 DP 275 (346)
T ss_pred cC
Confidence 43
No 270
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.11 E-value=5.7e-08 Score=90.10 Aligned_cols=287 Identities=17% Similarity=0.170 Sum_probs=165.1
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCC---------------cEEEEECCCCCCccccCCCCCCCCcEEEeccCCC
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSP---------------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN 197 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 197 (479)
....+.|+ .|..+.|+| ++.+|.|-+..+ .+.+||..++. .+..+.+....
T Consensus 65 ~l~~~~~~-~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~------------iv~sf~~~~q~ 130 (561)
T COG5354 65 KLVRFRHP-DVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM------------IVFSFNGISQP 130 (561)
T ss_pred heeeeecC-CceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCce------------eEeeccccCCc
Confidence 44556665 488889999 888998876543 49999999883 33333333321
Q ss_pred -cee-eeeecCCCCcEEEecCCCcEEEEecCCCccccccCC---cc--cc--cCCCCCc-eeecCCC--CCCCCCCCCCC
Q 011709 198 -AEF-ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP---AT--AK--SAGSSGS-IIKQSPK--PGDGNDKAADG 265 (479)
Q Consensus 198 -~v~-~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~--~~--~~~~~~~-~~~~~~~--~~~~~~~~~~~ 265 (479)
... -+.|+-+..++|--. ...+.++++........+.. .. .. ++.+... +..+.+. ...+.+.++..
T Consensus 131 ~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sI 209 (561)
T COG5354 131 YLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSI 209 (561)
T ss_pred ccccceeeeeecchhhhhhc-cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEc
Confidence 123 678888877665442 34688998733222111110 00 00 1111111 1222221 12233334444
Q ss_pred CCCCCceeecCCCCceEEEEEeeCCCcEEEEEe----------cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCC
Q 011709 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG----------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 335 (479)
Q Consensus 266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~ 335 (479)
+....+..-.-....=..+.|++.|..+++-.- ....+.+++++.... .......++|...+|+| .
T Consensus 210 p~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i---~V~~~~~~pVhdf~W~p-~ 285 (561)
T COG5354 210 PKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI---PVEKDLKDPVHDFTWEP-L 285 (561)
T ss_pred cCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc---ceeccccccceeeeecc-c
Confidence 432222211111122246788888854433221 125688888886653 33335678999999999 6
Q ss_pred CcEEEEE--eCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC---CCEEEEeCCCCCcccc
Q 011709 336 DNLILTG--SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKVGKKVE 410 (479)
Q Consensus 336 ~~~l~tg--s~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D---g~v~iwd~~~~~~~~~ 410 (479)
++.+++. -.+-.+.++|++. ... +......=+.+-|+|.++++| .++.| |.+-+||....-
T Consensus 286 S~~F~vi~g~~pa~~s~~~lr~-------Nl~--~~~Pe~~rNT~~fsp~~r~il-~agF~nl~gni~i~~~~~rf---- 351 (561)
T COG5354 286 SSRFAVISGYMPASVSVFDLRG-------NLR--FYFPEQKRNTIFFSPHERYIL-FAGFDNLQGNIEIFDPAGRF---- 351 (561)
T ss_pred CCceeEEecccccceeeccccc-------ceE--EecCCcccccccccCcccEEE-EecCCccccceEEeccCCce----
Confidence 6555544 4688999999996 433 334455667889999999866 55544 789999976521
Q ss_pred CCCCCCCCCCeeEE-EeCCCCCceeEEEecCCCeeeecCCCc-cccceeEEEEeec
Q 011709 411 QGPRTTNYPAGLFF-QHAGHSPSSSIKFVLRESCLVDNNHGL-SYANKKIKIYCHL 464 (479)
Q Consensus 411 ~~~~~~~~~~~l~~-~~~gh~~~~~~~~sp~~~~l~~~~~~~-~~~d~~i~i~~~~ 464 (479)
++. ...| ...+-+.|+||++++.+.-..- .-.|++|+||++.
T Consensus 352 -----------~~~~~~~~-~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 352 -----------KVAGAFNG-LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred -----------EEEEEeec-CCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 111 1111 2245678999999887765432 3558999999754
No 271
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.11 E-value=3.7e-08 Score=93.40 Aligned_cols=241 Identities=11% Similarity=0.177 Sum_probs=144.8
Q ss_pred CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC----CCcEEEEecCCCccccccCCcc
Q 011709 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK----DKSVVLWSIQDHITSSATDPAT 238 (479)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~----dg~i~vwd~~~~~~~~~~~~~~ 238 (479)
+.|++|+++..... .........-. ....|+++|++++|.+... +|.|..|++......
T Consensus 13 ~gI~~~~~d~~~g~--------l~~~~~~~~~~--~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~------- 75 (345)
T PF10282_consen 13 GGIYVFRFDEETGT--------LTLVQTVAEGE--NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT------- 75 (345)
T ss_dssp TEEEEEEEETTTTE--------EEEEEEEEESS--SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE-------
T ss_pred CcEEEEEEcCCCCC--------ceEeeeecCCC--CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce-------
Confidence 68999988443111 11122222222 2468999999999888776 579999988653100
Q ss_pred cccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCcee-
Q 011709 239 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK- 317 (479)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~- 317 (479)
...+............++++|++..++++.-.+|.|.++++..... +..
T Consensus 76 -----------------------------L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~-l~~~ 125 (345)
T PF10282_consen 76 -----------------------------LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS-LGEV 125 (345)
T ss_dssp -----------------------------EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE-EEEE
T ss_pred -----------------------------eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc-ccee
Confidence 0011122212334567899999955555555799999999987431 111
Q ss_pred --eec----------cCCCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCCCCCCCCCCc--eeeec-CCCCcEEEEEEe
Q 011709 318 --VEK----------AHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSP--INKFE-GHSAAVLCVQWS 381 (479)
Q Consensus 318 --~~~----------~~~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~--~~~~~-~h~~~v~~l~~~ 381 (479)
... .......++.|+| +++++++... ...|++|++.... +.. ...+. ........++|+
T Consensus 126 ~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~----~~l~~~~~~~~~~G~GPRh~~f~ 200 (345)
T PF10282_consen 126 VQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDT----GKLTPVDSIKVPPGSGPRHLAFS 200 (345)
T ss_dssp EEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-----TEEEEEEEECSTTSSEEEEEE-
T ss_pred eeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCC----ceEEEeeccccccCCCCcEEEEc
Confidence 110 1235578999999 8888777655 4589999998632 111 12222 234567899999
Q ss_pred cCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEE
Q 011709 382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIY 461 (479)
Q Consensus 382 p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~ 461 (479)
|+++++++..-.++.|.++++................|. ...+......++++||+++|+++..+ .++|.+|
T Consensus 201 pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~i~ispdg~~lyvsnr~----~~sI~vf 272 (345)
T PF10282_consen 201 PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE----GFTGENAPAEIAISPDGRFLYVSNRG----SNSISVF 272 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET----TSCSSSSEEEEEE-TTSSEEEEEECT----TTEEEEE
T ss_pred CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc----cccccCCceeEEEecCCCEEEEEecc----CCEEEEE
Confidence 999988888888999999999831111110000000000 01122246889999999999998877 8899999
Q ss_pred ee
Q 011709 462 CH 463 (479)
Q Consensus 462 ~~ 463 (479)
..
T Consensus 273 ~~ 274 (345)
T PF10282_consen 273 DL 274 (345)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 272
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=1.8e-09 Score=93.72 Aligned_cols=232 Identities=16% Similarity=0.192 Sum_probs=145.4
Q ss_pred ceeeeeecCCCCcEEEecCCCcEEEEecCCCcc-ccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC
Q 011709 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT-SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 276 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (479)
.|+++.|...|.+|++|...|.|.++.-+.... ...+-.. ..... .....+..+.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~te-FQshe----------------------~EFDYLkSle- 83 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTE-FQSHE----------------------LEFDYLKSLE- 83 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhh-hcccc----------------------cchhhhhhcc-
Confidence 589999999999999999999999997653210 0000000 00000 0000011111
Q ss_pred CCCceEEEEEeeC-CCcEEEEEecCCeEEEEeCCCCCC------------------C-----------------------
Q 011709 277 HEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTS------------------P----------------------- 314 (479)
Q Consensus 277 h~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~------------------~----------------------- 314 (479)
-...|+.+.|..+ +...|+..+.|.+|++|-++.... +
T Consensus 84 ieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p 163 (460)
T COG5170 84 IEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP 163 (460)
T ss_pred HHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc
Confidence 1235788888654 445788888999999999875521 0
Q ss_pred ceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC-----CcEEEEEEecCCCcEEE
Q 011709 315 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFG 389 (479)
Q Consensus 315 ~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~p~~~~lla 389 (479)
+......|...|++++|+. +...++++ +|-.|.+|++.-.+. .-.+..++.|. .-|++..|+|....+|.
T Consensus 164 ~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~---sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm 238 (460)
T COG5170 164 CRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDG---SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM 238 (460)
T ss_pred ceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCC---ceEEEeccCccHHHHHHHHhhcccCHhHcceEE
Confidence 0001136788899999997 66665554 578999999987542 11233444443 46899999998877787
Q ss_pred EEeCCCCEEEEeCCCCCccccCCCCCC--CCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 390 SSAEDGLLNIWDYEKVGKKVEQGPRTT--NYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 390 s~s~Dg~v~iwd~~~~~~~~~~~~~~~--~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
-.+..|.|++-|++....+...-.... -.+...-|...--.+++++.|+++|+++++-+. -++++|++.
T Consensus 239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy------ltvkiwDvn 309 (460)
T COG5170 239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY------LTVKIWDVN 309 (460)
T ss_pred EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc------ceEEEEecc
Confidence 888899999999996433321111000 001111121222244789999999999998877 499999754
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.05 E-value=1.1e-07 Score=100.00 Aligned_cols=242 Identities=15% Similarity=0.270 Sum_probs=130.8
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg 218 (479)
..+.|.++.|.+ +...|+.+..+|.|.+...... .........|.-+..|.+++||||+..|+..+.++
T Consensus 74 ~~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~----------~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~ 142 (928)
T PF04762_consen 74 PNDKIVSFQYLA-DSESLCIALASGDIILVREDPD----------PDEDEIEIVGSVDSGILAASWSPDEELLALVTGEG 142 (928)
T ss_pred CCCcEEEEEecc-CCCcEEEEECCceEEEEEccCC----------CCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCC
Confidence 457899999999 6778888889999999933221 00222344455445699999999999999988899
Q ss_pred cEEEEecCCCccccccCCcccccCCC-CCceeecCCCCC-----CCCC---CCCCCCCC-CCceeecCCCCceEEEEEee
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGS-SGSIIKQSPKPG-----DGND---KAADGPSV-GPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~---~~~~~~~~-~~~~~~~~h~~~v~~l~~~~ 288 (479)
+|.+..-.=. ........ ....+. ..-.+.++.... .+.. ...+.... .....+. +...-..++|..
T Consensus 143 ~l~~mt~~fd-~i~E~~l~-~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG 219 (928)
T PF04762_consen 143 NLLLMTRDFD-PISEVPLD-SDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG 219 (928)
T ss_pred EEEEEeccce-EEEEeecC-ccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC
Confidence 9988753211 00000000 000000 000011111100 0000 00000000 0012222 344566899999
Q ss_pred CCCcEEEEEec---C---CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC---CCcEEEEecCCCCCC
Q 011709 289 SSAQEFCSVGD---D---SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRRNLTSN 359 (479)
Q Consensus 289 ~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~---dg~I~iwd~~~~~~~ 359 (479)
|| .+||+.+- . ..+++|+-. +. +..+...-.+--.+++|-| .|++||+... .-.|.+|..+-...
T Consensus 220 DG-~yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrh- 293 (928)
T PF04762_consen 220 DG-EYFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRH- 293 (928)
T ss_pred CC-cEEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEe-
Confidence 99 67777653 2 579999865 44 4444333444456799999 9999998876 23566665443211
Q ss_pred CCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 360 ~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++....+......|..++|++++. +||..-.|. |.+|-..+
T Consensus 294 --geF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 294 --GEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred --eeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeC
Confidence 111111122344566666666666 455544333 55555444
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=1.8e-09 Score=113.22 Aligned_cols=188 Identities=19% Similarity=0.279 Sum_probs=139.9
Q ss_pred ceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC
Q 011709 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (479)
.|.++.-+|...+-++|+.||.|++|.-..+.....+ ...|.
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~--------------------------------------rt~g~ 2251 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCF--------------------------------------RTAGN 2251 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEe--------------------------------------eccCc
Confidence 4788888898899999999999999987543322111 11123
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC---CCcEEEEecC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRR 354 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~---dg~I~iwd~~ 354 (479)
..|+.+.|+.+| +.+..+..||.+.+|.+. .+ .....+.|+...+.+.|-. ..+++++. ++.+.+||.-
T Consensus 2252 -s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-pk--~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl 2323 (2439)
T KOG1064|consen 2252 -SRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-PK--PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTL 2323 (2439)
T ss_pred -chhhhhhhcccC-CceeeeccCCceeecccC-Cc--ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcc
Confidence 778999999999 678999999999999987 33 4556678998888888853 66777654 6799999987
Q ss_pred CCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCcee
Q 011709 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSS 434 (479)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~ 434 (479)
.... ...++ ..|.+.++++++-|..+ +|+|||.+|.|++||++.. +.... . ..
T Consensus 2324 ~~~~---~s~v~--~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rqr-ql~h~--------------~----~~-- 2376 (2439)
T KOG1064|consen 2324 LPPM---NSLVH--TCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQR-QLRHT--------------F----QA-- 2376 (2439)
T ss_pred cCcc---cceee--eecCCCceEEEEcCcce-EEEecCCcCcEEEeehHHH-HHHHH--------------h----hh--
Confidence 5321 12334 78999999999999988 6789999999999999873 11110 0 01
Q ss_pred EEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 435 IKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 435 ~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
+. ...++++++. .|.|+||+..+.
T Consensus 2377 --~~-~~~~f~~~ss-----~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2377 --LD-TREYFVTGSS-----EGNIKIWRLSEF 2400 (2439)
T ss_pred --hh-hhheeeccCc-----ccceEEEEcccc
Confidence 33 4567777877 899999976554
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.97 E-value=2.3e-07 Score=99.57 Aligned_cols=225 Identities=12% Similarity=0.164 Sum_probs=132.9
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEec------cCCCceeeeeecCC-CCcEEEec
Q 011709 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG------HQDNAEFALAMCPT-EPYVLSGG 215 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------h~~~~v~~l~~s~~-~~~l~s~s 215 (479)
...|++.++++.++++-+.+..|+++|..++.... ..+.. .....+.+ ..-..-.+++++|+ +..+++.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~t-lag~G--~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRT-LAGNG--TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEE-EeccC--cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 46677777444445555556789999987652110 00000 00000000 00011358999994 55667777
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
.++.|++||..++...... +. +.....+... .....-.....++++|++..+++
T Consensus 703 ~~~~I~v~d~~~g~v~~~~---------G~------------G~~~~~~g~~-----~~~~~~~~P~GIavspdG~~LYV 756 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFS---------GD------------GYERNLNGSS-----GTSTSFAQPSGISLSPDLKELYI 756 (1057)
T ss_pred CCCeEEEEECCCCeEEEEe---------cC------------CccccCCCCc-----cccccccCccEEEEeCCCCEEEE
Confidence 8899999998764321100 00 0000000000 00011134578999999866788
Q ss_pred EEecCCeEEEEeCCCCCCCcee-----------eec--------cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 011709 296 SVGDDSCLILWDARVGTSPVIK-----------VEK--------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (479)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~-----------~~~--------~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~ 356 (479)
+-+.++.|++||+.++....+. .+. ..-.....+++++ +++++++-+.++.|++||...
T Consensus 757 ADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~t- 834 (1057)
T PLN02919 757 ADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPAT- 834 (1057)
T ss_pred EECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCC-
Confidence 8888899999999876521100 000 0011235889999 888989989999999999876
Q ss_pred CCCCCCCceeeec--------------CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 357 TSNGVGSPINKFE--------------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 357 ~~~~~~~~~~~~~--------------~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+. +..+. +.-.....|+++++|+ ++++.+.++.|++||+.+.
T Consensus 835 -----g~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 835 -----KR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred -----Ce-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCC
Confidence 22 22221 1223577899999997 7888888999999999874
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.97 E-value=1.5e-08 Score=91.24 Aligned_cols=165 Identities=18% Similarity=0.222 Sum_probs=111.7
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC---c
Q 011709 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK---S 219 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg---~ 219 (479)
+..+.+++ .+.+||.+..+....++++..... ..+....+..... -+++.|..+......+..-| .
T Consensus 65 ~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~--------~~kl~~~~~v~~~--~~ai~~~~~~~sv~v~dkagD~~~ 133 (390)
T KOG3914|consen 65 PALVLTSD-SGRLVAVATSSKQRAVFDYRENPK--------GAKLLDVSCVPKR--PTAISFIREDTSVLVADKAGDVYS 133 (390)
T ss_pred ccccccCC-CceEEEEEeCCCceEEEEEecCCC--------cceeeeEeecccC--cceeeeeeccceEEEEeecCCcee
Confidence 34445566 888999999998888888877632 1123333333332 24555555444444433333 3
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
+.+|.... .+...+-||-..+.+++|+||+ .+++++..
T Consensus 134 ~di~s~~~-----------------------------------------~~~~~~lGhvSml~dVavS~D~-~~IitaDR 171 (390)
T KOG3914|consen 134 FDILSADS-----------------------------------------GRCEPILGHVSMLLDVAVSPDD-QFIITADR 171 (390)
T ss_pred eeeecccc-----------------------------------------cCcchhhhhhhhhheeeecCCC-CEEEEecC
Confidence 44443321 1114456899999999999999 79999999
Q ss_pred CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec
Q 011709 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
|..|++-...... .......||..-|..++.-+ ++.|++||.|++|++||+++ ++.+.++.
T Consensus 172 DEkIRvs~ypa~f-~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~s------gk~L~t~d 232 (390)
T KOG3914|consen 172 DEKIRVSRYPATF-VIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITS------GKLLDTCD 232 (390)
T ss_pred CceEEEEecCccc-chhhhccccHhheeeeeecc--CceeeecCCCCcEEEEeccc------CCcccccc
Confidence 9999987765433 12233458999999999985 56799999999999999999 66665554
No 277
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.2e-07 Score=87.33 Aligned_cols=206 Identities=17% Similarity=0.244 Sum_probs=131.8
Q ss_pred eEEEecCCCceeEEEecCC-CCcEEEE-----EeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC
Q 011709 133 KHKTIIHPGEVNRIRELPQ-NTKIVAT-----HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~-~~~~lat-----~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 206 (479)
.....-|...|+.+.++|. ....+|+ ++.-+.|+||.+....... ......+-- ...| .+.|++
T Consensus 158 ~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~-------~~a~ksFFk--adkv-qm~WN~ 227 (566)
T KOG2315|consen 158 TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ-------PVANKSFFK--ADKV-QMKWNK 227 (566)
T ss_pred ceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-------hhhhccccc--ccee-EEEecc
Confidence 3344456778999999995 4556664 3445689999987431110 011111111 1223 788988
Q ss_pred CCCcE-E--EecCCC---------cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee
Q 011709 207 TEPYV-L--SGGKDK---------SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY 274 (479)
Q Consensus 207 ~~~~l-~--s~s~dg---------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (479)
-|.-| + +..-|. ++.+.+++.... ..-
T Consensus 228 ~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~-----------------------------------------~V~ 266 (566)
T KOG2315|consen 228 LGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV-----------------------------------------SVP 266 (566)
T ss_pred CCceEEEEEEEeecCCCccccccceEEEEEecCceE-----------------------------------------EEe
Confidence 87622 2 222232 455555541111 111
Q ss_pred cCCCCceEEEEEeeCCCcEEEE-EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC---CcEEE
Q 011709 275 NGHEDTVEDVTFCPSSAQEFCS-VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRM 350 (479)
Q Consensus 275 ~~h~~~v~~l~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d---g~I~i 350 (479)
-...++|.++.|+|++..+.++ |-.-..+.|||++..- +.. -.+++=+++-|+| .|++|+.+|-+ |.|-|
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~---v~d--f~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP---VFD--FPEGPRNTAFFNP-HGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE---eEe--CCCCCccceEECC-CCCEEEEeecCCCCCceEE
Confidence 1246899999999999543333 3345689999998533 333 3567778999999 88888887765 79999
Q ss_pred EecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeC------CCCEEEEeCCC
Q 011709 351 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE------DGLLNIWDYEK 404 (479)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~------Dg~v~iwd~~~ 404 (479)
||..+ .+.+..+..-. -+-+.|+|+|++++ |+.. |..++||++.-
T Consensus 341 wDv~n------~K~i~~~~a~~--tt~~eW~PdGe~fl-TATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 341 WDVPN------RKLIAKFKAAN--TTVFEWSPDGEYFL-TATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred Eeccc------hhhccccccCC--ceEEEEcCCCcEEE-EEeccccEEecCCeEEEEecC
Confidence 99998 67787777543 45689999999855 5543 78899999874
No 278
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.95 E-value=4.1e-06 Score=77.92 Aligned_cols=246 Identities=11% Similarity=0.086 Sum_probs=135.7
Q ss_pred ecCCCCcEEEEEe---------CCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec-C-
Q 011709 148 ELPQNTKIVATHT---------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-K- 216 (479)
Q Consensus 148 ~~p~~~~~lat~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s-~- 216 (479)
++|+...+.++.+ .+..|.+||..+......+..... +.. +.+ .....++++|+|++|+... .
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~--p~~-~~~---~~~~~~~ls~dgk~l~V~n~~p 126 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG--PRF-LVG---TYPWMTSLTPDNKTLLFYQFSP 126 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC--chh-hcc---CccceEEECCCCCEEEEecCCC
Confidence 7885554555555 578999999999843322111000 000 001 1234889999999888766 3
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
+..|.+.|+.+......... ..+...+. ...-..+..+.++....++
T Consensus 127 ~~~V~VvD~~~~kvv~ei~v-------------------------------p~~~~vy~--t~e~~~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 127 SPAVGVVDLEGKAFVRMMDV-------------------------------PDCYHIFP--TANDTFFMHCRDGSLAKVG 173 (352)
T ss_pred CCEEEEEECCCCcEEEEEeC-------------------------------CCCcEEEE--ecCCccEEEeecCceEEEE
Confidence 68999999987544321111 00111111 1111222334555444444
Q ss_pred EecCCeEEEEeCCCCCCCceeeecc-----CCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec--
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKA-----HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-- 369 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~-- 369 (479)
-..+|....=.. ..+.. ...+ .|.+.++.+++.... |+|.+.|+....... ..++..+.
T Consensus 174 ~d~~g~~~~~~~--------~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~-~~~~~~~~~~ 239 (352)
T TIGR02658 174 YGTKGNPKIKPT--------EVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF-LPAIEAFTEA 239 (352)
T ss_pred ecCCCceEEeee--------eeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCccee-cceeeecccc
Confidence 444444321110 01111 0111 445546777777776 999999975422100 12222221
Q ss_pred -----CCCCcEEEEEEecCCCcEEEEEe---------CCCCEEEEeCCCCCccccCCCCCCCCCCeeEEE-eCCCCCcee
Q 011709 370 -----GHSAAVLCVQWSPDKSSVFGSSA---------EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHSPSSS 434 (479)
Q Consensus 370 -----~h~~~v~~l~~~p~~~~llas~s---------~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~-~~gh~~~~~ 434 (479)
...+.+.-++++|+++++++... ..+.|.++|..+. +.+.. ..| ..+..
T Consensus 240 ~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------------kvi~~i~vG-~~~~~ 303 (352)
T TIGR02658 240 EKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------------KRLRKIELG-HEIDS 303 (352)
T ss_pred ccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---------------eEEEEEeCC-Cceee
Confidence 12334445999999998876431 1257999998874 22222 334 35689
Q ss_pred EEEecCCC-eeeecCCCccccceeEEEEeeccc
Q 011709 435 IKFVLRES-CLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 435 ~~~sp~~~-~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
++++||++ .|+++... ++.|.+++....
T Consensus 304 iavS~Dgkp~lyvtn~~----s~~VsViD~~t~ 332 (352)
T TIGR02658 304 INVSQDAKPLLYALSTG----DKTLYIFDAETG 332 (352)
T ss_pred EEECCCCCeEEEEeCCC----CCcEEEEECcCC
Confidence 99999999 77777654 788999986554
No 279
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.92 E-value=2.2e-08 Score=90.28 Aligned_cols=161 Identities=17% Similarity=0.185 Sum_probs=106.0
Q ss_pred eeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCC
Q 011709 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (479)
...+..++.+++||.+..+....+++....... .+.+..+. -.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~------------------------------------~kl~~~~~-v~ 107 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKG------------------------------------AKLLDVSC-VP 107 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCc------------------------------------ceeeeEee-cc
Confidence 345566777888888888888777777542210 00001111 11
Q ss_pred CceEEEEEeeCCCcEE--EEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 011709 279 DTVEDVTFCPSSAQEF--CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l--~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~ 356 (479)
..-+++.|..+....+ -..++...+.+|....+. ....-+|-.-++.|+|+| |+++|+++..|..|+|-....
T Consensus 108 ~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~---~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa- 182 (390)
T KOG3914|consen 108 KRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR---CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPA- 182 (390)
T ss_pred cCcceeeeeeccceEEEEeecCCceeeeeecccccC---cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCc-
Confidence 2233444444442222 223444555566555443 334459999999999999 899999999999999977765
Q ss_pred CCCCCCCceeee-cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCcc
Q 011709 357 TSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 408 (479)
Q Consensus 357 ~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~ 408 (479)
...+..+ -||+.-|..++.-++.. |+|+|.|++|++||+.++..+
T Consensus 183 -----~f~IesfclGH~eFVS~isl~~~~~--LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 183 -----TFVIESFCLGHKEFVSTISLTDNYL--LLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -----ccchhhhccccHhheeeeeeccCce--eeecCCCCcEEEEecccCCcc
Confidence 3344444 47999999999987754 679999999999999996544
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.92 E-value=1.3e-07 Score=80.72 Aligned_cols=176 Identities=12% Similarity=0.045 Sum_probs=113.5
Q ss_pred CCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 207 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
...+|+.|+..|...+|...+...... ....|...|+-+.=
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~---------------------------------------~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY---------------------------------------QCDVSNNDVTLVKR 123 (344)
T ss_pred cccEEEeccccceeeeecccCccccee---------------------------------------eecccccchhhhhh
Confidence 345899999999999999876443221 11112222221111
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCC--CeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCc
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 364 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~ 364 (479)
..+...-+..++.|.++++.++.-+.. ... .|.. .++++++++ ++.++++.++...|-.|.+.... ...
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~--~~~--~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~s----ey~ 194 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSN--KFA--VHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDES----EYI 194 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcc--cce--eeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCcc----cee
Confidence 111223466788899999998876652 122 2333 388999999 99999999999999999998743 122
Q ss_pred ee-eecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCC
Q 011709 365 IN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRE 441 (479)
Q Consensus 365 ~~-~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~ 441 (479)
+. .....++.-.+..|+.... .||++..||++.|||++..+.+....... .+.|.+ +..+.|++-|
T Consensus 195 ~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sst----------rp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 195 ENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMAEISST----------RPHHNGAFRVCRFSLYG 262 (344)
T ss_pred eeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchhhhccc----------CCCCCCceEEEEecCCC
Confidence 22 2223344456788998877 69999999999999999876554432221 122333 6677777643
No 281
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.91 E-value=2.4e-06 Score=78.91 Aligned_cols=147 Identities=15% Similarity=0.158 Sum_probs=113.9
Q ss_pred ecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC-cEEEEecC
Q 011709 148 ELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK-SVVLWSIQ 226 (479)
Q Consensus 148 ~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg-~i~vwd~~ 226 (479)
|++.+++++|..|. |.+.|.+...+. ..-.+|.+ .|.-..+..+++-++.|..|| .+-++|..
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~--------------~iqv~~~~-~VrY~r~~~~~e~~vigt~dgD~l~iyd~~ 390 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGY--------------SIQVGKKG-GVRYRRIQVDPEGDVIGTNDGDKLGIYDKD 390 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCe--------------eEEcCCCC-ceEEEEEccCCcceEEeccCCceEEEEecC
Confidence 55668889998886 578887766551 12234554 377777777878899999999 89999998
Q ss_pred CCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEE
Q 011709 227 DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 306 (479)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 306 (479)
++.. ..+...-+.|.++..+++| ..++.+.....|.+.
T Consensus 391 ~~e~-----------------------------------------kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vi 428 (668)
T COG4946 391 GGEV-----------------------------------------KRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVI 428 (668)
T ss_pred CceE-----------------------------------------EEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEE
Confidence 7543 3455566789999999999 678888888899999
Q ss_pred eCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC----cEEEEecCC
Q 011709 307 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----SVRMFDRRN 355 (479)
Q Consensus 307 d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg----~I~iwd~~~ 355 (479)
|+.++. +...-+...+-|+.++|+| ++++||-+--+| .|+++|+..
T Consensus 429 didngn--v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 429 DIDNGN--VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EecCCC--eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCC
Confidence 999998 3444445677899999999 999999887776 689999875
No 282
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.91 E-value=1.1e-09 Score=104.06 Aligned_cols=244 Identities=14% Similarity=0.246 Sum_probs=155.2
Q ss_pred CceeEEEecCC-CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC-CCcEEEec---
Q 011709 141 GEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGG--- 215 (479)
Q Consensus 141 ~~V~~l~~~p~-~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~-~~~l~s~s--- 215 (479)
.-+.|+++.-. +..+++.|..+|.|.+-.+...... ......+|.. ..++++|++- .+.||.|-
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS----------s~E~tp~~ar-~Ct~lAwneLDtn~LAagldkh 125 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS----------SAEVTPGYAR-PCTSLAWNELDTNHLAAGLDKH 125 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc----------cceecccccc-cccccccccccHHHHHhhhhhh
Confidence 45667765543 4479999999999999888765211 1223344554 5789999985 44666664
Q ss_pred -CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec-CCCCceEEEEEeeCCCcE
Q 011709 216 -KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 216 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~ 293 (479)
.|..+.+||+.+........+ .+. +.....++++|-.+. .+
T Consensus 126 rnds~~~Iwdi~s~ltvPke~~------------------------------------~fs~~~l~gqns~cwlrd~-kl 168 (783)
T KOG1008|consen 126 RNDSSLKIWDINSLLTVPKESP------------------------------------LFSSSTLDGQNSVCWLRDT-KL 168 (783)
T ss_pred cccCCccceecccccCCCcccc------------------------------------ccccccccCccccccccCc-ch
Confidence 367899999987533111000 011 123345588888665 68
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEe-cCCCCCCCCCCceeeecCCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD-RRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd-~~~~~~~~~~~~~~~~~~h~ 372 (479)
+.+|.....+.++|+|... .......+..+..+..+|..++|+++-. ||.|-+|| .++.+ .++..+....
T Consensus 169 vlaGm~sr~~~ifdlRqs~---~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie-----npl~~i~~~~ 239 (783)
T KOG1008|consen 169 VLAGMTSRSVHIFDLRQSL---DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE-----NPLQIILRNE 239 (783)
T ss_pred hhcccccchhhhhhhhhhh---hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhc-----cHHHHHhhCC
Confidence 8899999999999999544 1222223445667888888889988776 99999999 55532 4554444333
Q ss_pred C----cEEEEEEecCCCcEEEEEeCC-CCEEEEeCCCCCccccCCCCCC-CCCCeeEEEeCCCCC-ceeEEEecCC
Q 011709 373 A----AVLCVQWSPDKSSVFGSSAED-GLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHSP-SSSIKFVLRE 441 (479)
Q Consensus 373 ~----~v~~l~~~p~~~~llas~s~D-g~v~iwd~~~~~~~~~~~~~~~-~~~~~l~~~~~gh~~-~~~~~~sp~~ 441 (479)
. .+..++|+|....++++...| ++|+++|+...+.+...+.... ......-+.+.++.. |....|++..
T Consensus 240 N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s 315 (783)
T KOG1008|consen 240 NKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTAS 315 (783)
T ss_pred CCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCC
Confidence 3 489999999988888888875 7899999987544332222111 000111234444333 7778887754
No 283
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=4.5e-09 Score=92.63 Aligned_cols=122 Identities=13% Similarity=0.230 Sum_probs=95.6
Q ss_pred CCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCC----CCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEe
Q 011709 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG----TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (479)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd 352 (479)
..+.|.++.|+..+ ++++.|..+|.|..+|+|.+ .+ +...+ -|.+.|+++..-..++.+|++.+.+|+|++||
T Consensus 251 sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~-~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD 327 (425)
T KOG2695|consen 251 SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGW-CAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYD 327 (425)
T ss_pred cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCc-ceEEE-EcCcchhhhhhhccccceEeeccCcCceeEee
Confidence 45678899998877 68999999999999999986 23 23333 58999999988776789999999999999999
Q ss_pred cCCCCCCCCCCceeeecCCCCcEEEEE--EecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 353 RRNLTSNGVGSPINKFEGHSAAVLCVQ--WSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+|.... +.-+.++.+|...-.-+- .++... +++++|.|...|||.+..+
T Consensus 328 ~R~~K~---~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 328 LRATKC---KKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred ehhhhc---ccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccC
Confidence 998331 233889999976544433 345555 5668999999999999973
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=2e-06 Score=83.25 Aligned_cols=182 Identities=11% Similarity=-0.009 Sum_probs=109.5
Q ss_pred ceeeeeecCCCCc-EEEecC---CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCcee
Q 011709 198 AEFALAMCPTEPY-VLSGGK---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 273 (479)
Q Consensus 198 ~v~~l~~s~~~~~-l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (479)
....-.|+|+|+. ++..+. +..|.++|+.++.. ..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-----------------------------------------~~ 227 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-----------------------------------------EK 227 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-----------------------------------------EE
Confidence 3568999999985 554333 35688888865432 22
Q ss_pred ecCCCCceEEEEEeeCCCcEEEEEecC--CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC-CC--cE
Q 011709 274 YNGHEDTVEDVTFCPSSAQEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN--SV 348 (479)
Q Consensus 274 ~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg--~I 348 (479)
+....+......|+|+|..++++.+.+ ..|.++|+.++. ...+..+........|+| +|+.|+-.+. .| .|
T Consensus 228 lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~I 303 (419)
T PRK04043 228 IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---LTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNI 303 (419)
T ss_pred EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc---EEEcccCCCccCccEECC-CCCEEEEEECCCCCceE
Confidence 222344456678999997766666555 468888887776 233333443344568999 8876666554 34 57
Q ss_pred EEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC--------CCEEEEeCCCCCccccCCCCCCCCCC
Q 011709 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--------GLLNIWDYEKVGKKVEQGPRTTNYPA 420 (479)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D--------g~v~iwd~~~~~~~~~~~~~~~~~~~ 420 (479)
.++|+.. +.. ..+...... ...|+|+|++++.+.... ..|.+.|+..+..
T Consensus 304 y~~dl~~------g~~-~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~------------- 361 (419)
T PRK04043 304 FMKKLNS------GSV-EQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI------------- 361 (419)
T ss_pred EEEECCC------CCe-EeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-------------
Confidence 7777765 332 222211111 248999999876565443 3577778766311
Q ss_pred eeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 421 GLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 421 ~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
..+.. .+ ......|+|||+.++-...
T Consensus 362 ~~LT~-~~--~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 362 RRLTA-NG--VNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred EECCC-CC--CcCCeEECCCCCEEEEEEc
Confidence 11111 11 2246889999998766554
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=3.1e-06 Score=81.99 Aligned_cols=193 Identities=8% Similarity=0.025 Sum_probs=112.4
Q ss_pred CceeEEEecCCCCc-EEEEEeC---CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE-ec
Q 011709 141 GEVNRIRELPQNTK-IVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS-GG 215 (479)
Q Consensus 141 ~~V~~l~~~p~~~~-~lat~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s-~s 215 (479)
+.+..-+|+| +++ +++..+. +..|+++|+.++. .. .+....+ ......|+|||+.|+. .+
T Consensus 188 ~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~------------~~-~lt~~~g-~~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 188 GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGK------------KE-KIASSQG-MLVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCc------------EE-EEecCCC-cEEeeEECCCCCEEEEEEc
Confidence 4677889999 555 4554433 3579999998762 11 1222222 3456789999986653 33
Q ss_pred CC--CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 216 KD--KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 216 ~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
.+ ..|.++|+.++.. ..+..+........|+|+|..+
T Consensus 253 ~~g~~~Iy~~dl~~g~~-----------------------------------------~~LT~~~~~d~~p~~SPDG~~I 291 (419)
T PRK04043 253 PKGQPDIYLYDTNTKTL-----------------------------------------TQITNYPGIDVNGNFVEDDKRI 291 (419)
T ss_pred cCCCcEEEEEECCCCcE-----------------------------------------EEcccCCCccCccEECCCCCEE
Confidence 33 4577777754322 1122222223345799999766
Q ss_pred EEEEecCC--eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC---------CcEEEEecCCCCCCCCC
Q 011709 294 FCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---------NSVRMFDRRNLTSNGVG 362 (479)
Q Consensus 294 l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d---------g~I~iwd~~~~~~~~~~ 362 (479)
+++....+ .|.+.|+.++. ....... .. ....|+| ++.+|+..+.. ..|.+.|+.. +
T Consensus 292 ~F~Sdr~g~~~Iy~~dl~~g~--~~rlt~~-g~--~~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~------g 359 (419)
T PRK04043 292 VFVSDRLGYPNIFMKKLNSGS--VEQVVFH-GK--NNSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNS------D 359 (419)
T ss_pred EEEECCCCCceEEEEECCCCC--eEeCccC-CC--cCceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCC------C
Confidence 66665544 57777887776 2222211 11 1248999 88877766553 2678888876 3
Q ss_pred CceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCC
Q 011709 363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 363 ~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~ 403 (479)
. ...+... .......|+|+|+.++.+....+.-.|+-+.
T Consensus 360 ~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 360 Y-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred C-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 2 3334332 2233588999999766555444444444433
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.87 E-value=5.4e-07 Score=83.82 Aligned_cols=279 Identities=14% Similarity=0.176 Sum_probs=160.6
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC-
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK- 218 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg- 218 (479)
.-++..++|+| .|.+|++.... .|.+|+-... . ...-..|.+ |.-+.|+|.+++|.+=+..+
T Consensus 32 ~~p~~~~~~SP-~G~~l~~~~~~-~V~~~~g~~~------------~-~l~~~~~~~--V~~~~fSP~~kYL~tw~~~pi 94 (561)
T COG5354 32 NWPVAYVSESP-LGTYLFSEHAA-GVECWGGPSK------------A-KLVRFRHPD--VKYLDFSPNEKYLVTWSREPI 94 (561)
T ss_pred CcchhheeecC-cchheehhhcc-ceEEccccch------------h-heeeeecCC--ceecccCcccceeeeeccCCc
Confidence 34788999999 88899887776 5899987765 1 222233443 89999999999998755433
Q ss_pred --------------cEEEEecCCCccccccCCcccccCCCCCceeecCCC------CCCCCCCCCCC-CC--CCCceeec
Q 011709 219 --------------SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK------PGDGNDKAADG-PS--VGPRGIYN 275 (479)
Q Consensus 219 --------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~--~~~~~~~~ 275 (479)
.+.+||+.++.....+....... .....+.+... .....+.+.+. .. ..+...++
T Consensus 95 ~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~--~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr 172 (561)
T COG5354 95 IEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY--LGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLR 172 (561)
T ss_pred cChhhccCCccccCceeEEeccCceeEeeccccCCcc--cccceeeeeecchhhhhhccCeEEEEecCCccccCchhhcc
Confidence 49999999876543333211110 00000110000 01111111111 11 11122222
Q ss_pred CCCCceEEEEEeeCCC-cEEEE-----EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEe------
Q 011709 276 GHEDTVEDVTFCPSSA-QEFCS-----VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS------ 343 (479)
Q Consensus 276 ~h~~~v~~l~~~~~~~-~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs------ 343 (479)
...|....|+|.+. ..|+. .+.++.+++|.+..++ .+....--...=..+.|++ .|.+|..--
T Consensus 173 --~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s--~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ks 247 (561)
T COG5354 173 --PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS--VLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKS 247 (561)
T ss_pred --ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC--eeeeeeeEeecccEEEEec-CCceEEEEEEEeeec
Confidence 35688889998732 22333 4567899999998655 2222111122224578888 666554311
Q ss_pred -----CCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEE--eCCCCEEEEeCCCCCccccCCCCCC
Q 011709 344 -----ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTT 416 (479)
Q Consensus 344 -----~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~--s~Dg~v~iwd~~~~~~~~~~~~~~~ 416 (479)
....++|++++. .-+.....-.++|...+|.|.++. |++. -.+..+.++|++..
T Consensus 248 nKsyfgesnLyl~~~~e-------~~i~V~~~~~~pVhdf~W~p~S~~-F~vi~g~~pa~~s~~~lr~N----------- 308 (561)
T COG5354 248 NKSYFGESNLYLLRITE-------RSIPVEKDLKDPVHDFTWEPLSSR-FAVISGYMPASVSVFDLRGN----------- 308 (561)
T ss_pred ccceeccceEEEEeecc-------cccceeccccccceeeeecccCCc-eeEEecccccceeecccccc-----------
Confidence 134688888875 223333356789999999999876 4444 46889999999872
Q ss_pred CCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeecccccc
Q 011709 417 NYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEALKS 469 (479)
Q Consensus 417 ~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~~~ 469 (479)
+.|...- +.-..+.|+|.+++++.+|-+ =-.|+|.+|+....++-
T Consensus 309 -----l~~~~Pe-~~rNT~~fsp~~r~il~agF~--nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 309 -----LRFYFPE-QKRNTIFFSPHERYILFAGFD--NLQGNIEIFDPAGRFKV 353 (561)
T ss_pred -----eEEecCC-cccccccccCcccEEEEecCC--ccccceEEeccCCceEE
Confidence 2222221 123566777777777665432 11467777776666543
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1e-08 Score=95.77 Aligned_cols=170 Identities=24% Similarity=0.417 Sum_probs=120.4
Q ss_pred cEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCC
Q 011709 188 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS 267 (479)
Q Consensus 188 ~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (479)
...+.||+.. |..++--.+.+.+++++.|++|++|.++...-. ..+
T Consensus 728 L~nf~GH~~~-iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------------------------------~~t 773 (1034)
T KOG4190|consen 728 LCNFTGHQEK-IRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------------------------------IGT 773 (1034)
T ss_pred eecccCcHHH-hHHHHhcccccceeeccCCceEEEEEeccccCc---------------------------------ccc
Confidence 3467899874 788877777788999999999999999743111 122
Q ss_pred CCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCcee-eec--cC--CCCeEEEEecCCCCcEEEEE
Q 011709 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK-VEK--AH--DADLHCVDWNPLDDNLILTG 342 (479)
Q Consensus 268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~--~~--~~~v~~l~~sp~~~~~l~tg 342 (479)
..+..+++.|+.+|.++.|-.+. +.+++ .||-|++||.--++ .+. ... .| .+.|.|+.- - +..++.+|
T Consensus 774 saCQfTY~aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFigr--~Laq~~dapk~~a~~~ikcl~n-v-~~~iliAg 846 (1034)
T KOG4190|consen 774 SACQFTYQAHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFIGR--LLAQMEDAPKEGAGGNIKCLEN-V-DRHILIAG 846 (1034)
T ss_pred ceeeeEhhhccCcccceeeeecc-ceeee--ccCcceeecccccc--hhHhhhcCcccCCCceeEeccc-C-cchheeee
Confidence 23447888999999999998876 44554 57899999987666 222 111 12 223333321 1 34455555
Q ss_pred -eCCCcEEEEecCCCCCCCCCCceeee-----cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 343 -SADNSVRMFDRRNLTSNGVGSPINKF-----EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 343 -s~dg~I~iwd~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+...+|+++|.|. ..-..++ .+....+.+++..+.|+. +|.+-..|.|.+.|.+++
T Consensus 847 csaeSTVKl~DaRs------ce~~~E~kVcna~~Pna~~R~iaVa~~GN~-lAa~LSnGci~~LDaR~G 908 (1034)
T KOG4190|consen 847 CSAESTVKLFDARS------CEWTCELKVCNAPGPNALTRAIAVADKGNK-LAAALSNGCIAILDARNG 908 (1034)
T ss_pred ccchhhheeeeccc------ccceeeEEeccCCCCchheeEEEeccCcch-hhHHhcCCcEEEEecCCC
Confidence 7789999999998 4444444 345567899999999997 678888999999999984
No 288
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.86 E-value=2.6e-08 Score=84.60 Aligned_cols=75 Identities=28% Similarity=0.436 Sum_probs=67.8
Q ss_pred ceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
.|.+++-+|...+++++|++||.+-+||.|.... ....+..|+.+++-+-|+|.++..|++++.||.+.-||...
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccc-hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3889999998878999999999999999999865 36677899999999999999999999999999999999873
No 289
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.82 E-value=2.9e-06 Score=73.83 Aligned_cols=180 Identities=10% Similarity=0.099 Sum_probs=111.6
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeec-------cCCCCeEEEEecCCC-----CcEEEEEeCC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-------AHDADLHCVDWNPLD-----DNLILTGSAD 345 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~l~~sp~~-----~~~l~tgs~d 345 (479)
...-..++|+||+ .+||.+...|+|++||+-... +..+. .-...|..+.|-+.. ...|++-+.+
T Consensus 43 ~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~---lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~ 118 (282)
T PF15492_consen 43 NPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSE---LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR 118 (282)
T ss_pred CchheEEEECCCC-cEEEEEcCCCeEEEEecccce---eEEcCcccccCCccccceeeeEeeccccccccceeEEEEecc
Confidence 3446789999999 789999999999999998644 11111 123456677775422 3356667778
Q ss_pred CcEEEEecCCCCCCCCCCceeeec---CCCCcEEEEEEecCCCcEEEEEeCCC----------CEEEEeCCCCCcccc--
Q 011709 346 NSVRMFDRRNLTSNGVGSPINKFE---GHSAAVLCVQWSPDKSSVFGSSAEDG----------LLNIWDYEKVGKKVE-- 410 (479)
Q Consensus 346 g~I~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~llas~s~Dg----------~v~iwd~~~~~~~~~-- 410 (479)
|.++-|-+......+ .+..+++. .+...|+++.++|..+.+++.|.... -+.-|.+-.+..-..
T Consensus 119 G~L~Sy~vs~gt~q~-y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v 197 (282)
T PF15492_consen 119 GQLRSYLVSVGTNQG-YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQV 197 (282)
T ss_pred ceeeeEEEEcccCCc-ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEc
Confidence 888877763211000 22333332 24679999999999886555554432 256677655321111
Q ss_pred -CCCCCC----------CCCCeeEEEeCCCCC--ceeEEEecCCCeeeecCCCccccceeEEEEeecccc
Q 011709 411 -QGPRTT----------NYPAGLFFQHAGHSP--SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEAL 467 (479)
Q Consensus 411 -~~~~~~----------~~~~~l~~~~~gh~~--~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~ 467 (479)
..+... ..+.-.+|...+... +..|..||||+.|++... +|+|.+|......
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~-----sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 198 TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHF-----SGSLSLWEIPSLR 262 (282)
T ss_pred cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEc-----CCeEEEEecCcch
Confidence 110000 012222334434322 899999999999999999 9999999887663
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=1e-06 Score=85.97 Aligned_cols=253 Identities=17% Similarity=0.169 Sum_probs=171.5
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC------------
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE------------ 208 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~------------ 208 (479)
..-+++.|+| .| +||-|+.. .|.|-|..+. +.+..+..|.. .|+.+.|.|-.
T Consensus 16 sN~~A~Dw~~-~G-LiAygshs-lV~VVDs~s~------------q~iqsie~h~s-~V~~VrWap~~~p~~llS~~~~~ 79 (1062)
T KOG1912|consen 16 SNRNAADWSP-SG-LIAYGSHS-LVSVVDSRSL------------QLIQSIELHQS-AVTSVRWAPAPSPRDLLSPSSSQ 79 (1062)
T ss_pred ccccccccCc-cc-eEEEecCc-eEEEEehhhh------------hhhhccccCcc-ceeEEEeccCCCchhccCccccc
Confidence 3366788988 44 88888765 7888898876 66677778885 69999998741
Q ss_pred CcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee
Q 011709 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 209 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (479)
-.|+++...|.|.+||...... +..+..|..++.+++|-+
T Consensus 80 lliAsaD~~GrIil~d~~~~s~----------------------------------------~~~l~~~~~~~qdl~W~~ 119 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASV----------------------------------------INWLSHSNDSVQDLCWVP 119 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhh----------------------------------------hhhhcCCCcchhheeeee
Confidence 2577888889999999864322 134556788889999876
Q ss_pred C---CCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCC-CCCCc
Q 011709 289 S---SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN-GVGSP 364 (479)
Q Consensus 289 ~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~-~~~~~ 364 (479)
. ...++++-....+|.+|+..+|. .............|+.+.|++.+.+..-+..|.+.+-+.-...+. ..++.
T Consensus 120 ~rd~Srd~LlaIh~ss~lvLwntdtG~--k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~ 197 (1062)
T KOG1912|consen 120 ARDDSRDVLLAIHGSSTLVLWNTDTGE--KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKE 197 (1062)
T ss_pred ccCcchheeEEecCCcEEEEEEccCCc--eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCcee
Confidence 3 33567777888899999999998 444444455667789999999988888888888888776543321 11222
Q ss_pred eeeecCCCC-------------------------cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCC
Q 011709 365 INKFEGHSA-------------------------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP 419 (479)
Q Consensus 365 ~~~~~~h~~-------------------------~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 419 (479)
.+.-..|.+ -...++|+|.-+.++ -...-..+.|+|++-. .
T Consensus 198 ~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l-fi~~prellv~dle~~-~------------ 263 (1062)
T KOG1912|consen 198 FQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL-FITFPRELLVFDLEYE-C------------ 263 (1062)
T ss_pred EEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE-EEEeccceEEEcchhh-c------------
Confidence 222222221 012457788877654 4556778999999863 1
Q ss_pred CeeEEEeCCCCCceeEEEecCC--CeeeecCCCccccceeEEEEeeccccccee
Q 011709 420 AGLFFQHAGHSPSSSIKFVLRE--SCLVDNNHGLSYANKKIKIYCHLEALKSFQ 471 (479)
Q Consensus 420 ~~l~~~~~gh~~~~~~~~sp~~--~~l~~~~~~~~~~d~~i~i~~~~~~~~~~~ 471 (479)
.+..+.--...+.=+.|-|++ ..|++... ||.+.+|...++-..|+
T Consensus 264 -~l~vvpier~~akfv~vlP~~~rd~LfclH~-----nG~ltirvrk~~~~~f~ 311 (1062)
T KOG1912|consen 264 -CLAVVPIERGGAKFVDVLPDPRRDALFCLHS-----NGRLTIRVRKEEPTEFK 311 (1062)
T ss_pred -eeEEEEeccCCcceeEeccCCCcceEEEEec-----CCeEEEEEeeccCcccc
Confidence 122222222334456676664 46888888 99999998877655543
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=1.2e-07 Score=91.33 Aligned_cols=171 Identities=17% Similarity=0.222 Sum_probs=123.8
Q ss_pred eeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCC
Q 011709 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (479)
..|++|+....++++|+.||.++|..+.+........+ +........-+++.||.
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------------------------laa~snLsmNQtLeGH~ 71 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------------------------LAAASNLSMNQTLEGHN 71 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------------------------cccccccchhhhhccCc
Confidence 68999999999999999999999999876433221111 11112223337899999
Q ss_pred CceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCC
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~ 358 (479)
..|.-+.|+... +.|-+...+|.|.+|-+-.+++--...-....+-|.+++|+. +|..|.....||.|.+=.+..
T Consensus 72 ~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdG--- 146 (1189)
T KOG2041|consen 72 ASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDG--- 146 (1189)
T ss_pred ceEEEEEecccc-ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeecc---
Confidence 999999999887 678999999999999998887421122224456789999999 999999999999988766653
Q ss_pred CCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
..+.--.-.......+.|++|.+.+| .+-..|.+.++|.+.
T Consensus 147 ----NRIwgKeLkg~~l~hv~ws~D~~~~L-f~~ange~hlydnqg 187 (1189)
T KOG2041|consen 147 ----NRIWGKELKGQLLAHVLWSEDLEQAL-FKKANGETHLYDNQG 187 (1189)
T ss_pred ----ceecchhcchheccceeecccHHHHH-hhhcCCcEEEecccc
Confidence 22221111112344789999998644 677789999999764
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.77 E-value=1.3e-05 Score=72.27 Aligned_cols=225 Identities=11% Similarity=0.081 Sum_probs=136.1
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeec-CCCCcEEEecCCCcEEEE
Q 011709 145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC-PTEPYVLSGGKDKSVVLW 223 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s-~~~~~l~s~s~dg~i~vw 223 (479)
.+.|.+.++.++++-...+.|+.|+..++.. ..+... ...++++. +++ .|+.+..+ .+.++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-------------~~~~~~---~~~G~~~~~~~g-~l~v~~~~-~~~~~ 65 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-------------EVIDLP---GPNGMAFDRPDG-RLYVADSG-GIAVV 65 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-------------EEEESS---SEEEEEEECTTS-EEEEEETT-CEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-------------EEEecC---CCceEEEEccCC-EEEEEEcC-ceEEE
Confidence 4678887888888888899999999987621 111111 14688888 564 45555544 45666
Q ss_pred ecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee--cC-CCCceEEEEEeeCCCcEEEEEecC
Q 011709 224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--NG-HEDTVEDVTFCPSSAQEFCSVGDD 300 (479)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-h~~~v~~l~~~~~~~~~l~s~~~d 300 (479)
|+.++..... ... .. .....+++++.++| +++++....
T Consensus 66 d~~~g~~~~~--------------------------------------~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~ 106 (246)
T PF08450_consen 66 DPDTGKVTVL--------------------------------------ADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGG 106 (246)
T ss_dssp ETTTTEEEEE--------------------------------------EEEETTCSCTEEEEEEEE-TTS--EEEEEECC
T ss_pred ecCCCcEEEE--------------------------------------eeccCCCcccCCCceEEEcCCC-CEEEEecCC
Confidence 8876432111 111 11 34568999999999 566665543
Q ss_pred --------CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEE-EEeCCCcEEEEecCCCCCCC-CCCceeeecC
Q 011709 301 --------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNG-VGSPINKFEG 370 (479)
Q Consensus 301 --------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~-tgs~dg~I~iwd~~~~~~~~-~~~~~~~~~~ 370 (479)
|.|..++.. ++ +......-...+.|+|+| +++.|+ +-+..+.|..||+....... ..+.+..+..
T Consensus 107 ~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 181 (246)
T PF08450_consen 107 GGASGIDPGSVYRIDPD-GK---VTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG 181 (246)
T ss_dssp BCTTCGGSEEEEEEETT-SE---EEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS
T ss_pred CccccccccceEEECCC-Ce---EEEEecCcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCC
Confidence 567777777 44 222223345678999999 777655 66678899999997532100 0011222333
Q ss_pred CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEe-cCCCeeeec
Q 011709 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFV-LRESCLVDN 447 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~s-p~~~~l~~~ 447 (479)
..+..-.+++..+|+ |+++.-..+.|.++|..- ... . ..... -..+++++|. ++...|+.+
T Consensus 182 ~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G--~~~-----------~-~i~~p-~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 182 GPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDG--KLL-----------R-EIELP-VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SSCEEEEEEEBTTS--EEEEEETTTEEEEEETTS--CEE-----------E-EEE-S-SSSEEEEEEESTTSSEEEEE
T ss_pred CCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCc--cEE-----------E-EEcCC-CCCEEEEEEECCCCCEEEEE
Confidence 333578999999998 676766788999999772 211 1 11222 2357999995 665555543
No 293
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.7e-06 Score=81.43 Aligned_cols=277 Identities=13% Similarity=0.172 Sum_probs=160.4
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC-------
Q 011709 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK------- 216 (479)
Q Consensus 144 ~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~------- 216 (479)
+-++|+| .|.+|+|-...| |.+|-=..- ...+. -.|.+ |.-+.|||..++|+|=+.
T Consensus 214 tyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f------------~r~~R-F~Hp~--Vq~idfSP~EkYLVT~s~~p~~~~~ 276 (698)
T KOG2314|consen 214 TYVRWSP-KGTYLVTFHKQG-IALWGGESF------------DRIQR-FYHPG--VQFIDFSPNEKYLVTYSPEPIIVEE 276 (698)
T ss_pred eeEEecC-CceEEEEEeccc-eeeecCccH------------HHHHh-ccCCC--ceeeecCCccceEEEecCCccccCc
Confidence 5688999 889999988775 888854432 11111 24554 789999999999998542
Q ss_pred ----CCcEEEEecCCCccccccCCcccccCCCCCceeecCCC------CCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 217 ----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK------PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 217 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
...++|||+.++.....+... ........+..++.. .....+.+++.+...++-.-.-....|....|
T Consensus 277 ~d~e~~~l~IWDI~tG~lkrsF~~~--~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~Fsw 354 (698)
T KOG2314|consen 277 DDNEGQQLIIWDIATGLLKRSFPVI--KSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSW 354 (698)
T ss_pred ccCCCceEEEEEccccchhcceecc--CCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCccc
Confidence 257999999998765554431 111112222232222 12244455555544333222223457889999
Q ss_pred eeCCCcEEEEEec-----CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEE----------eCCCcEEEE
Q 011709 287 CPSSAQEFCSVGD-----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG----------SADNSVRMF 351 (479)
Q Consensus 287 ~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tg----------s~dg~I~iw 351 (479)
+|.+ ++||--.. -..+.+-.+.+++ .+++..-+.-.=..+-|-. +|.||+.- +.=..+.|+
T Consensus 355 sP~~-~llAYwtpe~~~~parvtL~evPs~~--~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIf 430 (698)
T KOG2314|consen 355 SPTS-NLLAYWTPETNNIPARVTLMEVPSKR--EIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIF 430 (698)
T ss_pred CCCc-ceEEEEcccccCCcceEEEEecCccc--eeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEE
Confidence 9987 55554221 1234444444443 2333222222222355555 56666532 222346677
Q ss_pred ecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeC---CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC
Q 011709 352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (479)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~---Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g 428 (479)
.++..+ -|+.... -...|...+|-|.|.. |++.+. ..++.+|-+++.. ..+.|+-....
T Consensus 431 rireKd-----Ipve~ve-lke~vi~FaWEP~gdk-F~vi~g~~~k~tvsfY~~e~~~-----------~~~~lVk~~dk 492 (698)
T KOG2314|consen 431 RIREKD-----IPVEVVE-LKESVIAFAWEPHGDK-FAVISGNTVKNTVSFYAVETNI-----------KKPSLVKELDK 492 (698)
T ss_pred EeeccC-----CCceeee-cchheeeeeeccCCCe-EEEEEccccccceeEEEeecCC-----------Cchhhhhhhcc
Confidence 776521 3444443 4568899999999986 444433 3678888887421 22344444443
Q ss_pred CCCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 429 HSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 429 h~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
...+.+.|+|.|++++.++-. ...|.+..|+..
T Consensus 493 -~~~N~vfwsPkG~fvvva~l~--s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 493 -KFANTVFWSPKGRFVVVAALV--SRRGDLEFYDTD 525 (698)
T ss_pred -cccceEEEcCCCcEEEEEEec--ccccceEEEecc
Confidence 446899999999999887542 246677777654
No 294
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.73 E-value=3.9e-07 Score=90.42 Aligned_cols=145 Identities=16% Similarity=0.265 Sum_probs=115.4
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC---------CCcEEEEecCCCCCCCCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---------DNSVRMFDRRNLTSNGVG 362 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~---------dg~I~iwd~~~~~~~~~~ 362 (479)
+++.+|...|+|.+-|.++.+ .++.+..|.+.|..+.. .|++|+++|. |..|+|||+|+.
T Consensus 188 r~lf~G~t~G~V~LrD~~s~~--~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm------ 256 (1118)
T KOG1275|consen 188 RNLFCGDTRGTVFLRDPNSFE--TIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM------ 256 (1118)
T ss_pred cEEEeecccceEEeecCCcCc--eeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhh------
Confidence 689999999999999999988 78999999999988877 5788888875 445899999994
Q ss_pred CceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCC
Q 011709 363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRES 442 (479)
Q Consensus 363 ~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~ 442 (479)
+.+.-+..+.++ .-+.|+|.-...+|.++..|...+-|....++ .+.....++.....+..+++++.+.
T Consensus 257 ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN----------P~~~~~~v~p~~s~i~~fDiSsn~~ 325 (1118)
T KOG1275|consen 257 RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN----------PPAGVKMVNPNGSGISAFDISSNGD 325 (1118)
T ss_pred hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC----------CccceeEEccCCCcceeEEecCCCc
Confidence 445445545444 56889998777788999999999999433211 3345566666666699999999999
Q ss_pred eeeecCCCccccceeEEEEee
Q 011709 443 CLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 443 ~l~~~~~~~~~~d~~i~i~~~ 463 (479)
.++-+.. +|.|.+|..
T Consensus 326 alafgd~-----~g~v~~wa~ 341 (1118)
T KOG1275|consen 326 ALAFGDH-----EGHVNLWAD 341 (1118)
T ss_pred eEEEecc-----cCcEeeecC
Confidence 9999999 999999963
No 295
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.71 E-value=6.5e-06 Score=84.61 Aligned_cols=239 Identities=15% Similarity=0.235 Sum_probs=136.3
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
+.|.++.|.. +.+-++.+..+|.|.+-|.++. .....|..+..|.+++|+||+..++..+.++++
T Consensus 69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~--------------~~eivg~vd~GI~aaswS~Dee~l~liT~~~tl 133 (1265)
T KOG1920|consen 69 DEIVSVQFLA-DTNSICVITALGDIILVDPETL--------------ELEIVGNVDNGISAASWSPDEELLALITGRQTL 133 (1265)
T ss_pred cceEEEEEec-ccceEEEEecCCcEEEEccccc--------------ceeeeeeccCceEEEeecCCCcEEEEEeCCcEE
Confidence 5799999988 7778888889999999987765 234455555679999999999998888877877
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee------cCCCCceEEEEEeeCCCcEE
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY------NGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~l~~~~~~~~~l 294 (479)
.+-.-. -...............+...-+.++................+..... .-+. .=..+.|..+| .+|
T Consensus 134 l~mT~~-f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg-~~f 210 (1265)
T KOG1920|consen 134 LFMTKD-FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD-HKTSISWRGDG-EYF 210 (1265)
T ss_pred EEEecc-ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhcc-CCceEEEccCC-cEE
Confidence 765431 00000000000000000000000000000000000000000000000 0111 12468999998 567
Q ss_pred EEE-----ecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC---CCcEEEEecCCCCCCCCCCcee
Q 011709 295 CSV-----GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 295 ~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~---dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
++. ..-..|++||.. +. +-..-..-.+.=.+++|-| .|.++++-.. |+.|.+|..+.... +....
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~--Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~h---g~f~l 283 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GA--LNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRH---GEFVL 283 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-ch--hhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccc---ccccc
Confidence 762 223789999987 44 2222223334446899999 8989888554 55788988664332 22333
Q ss_pred eecCCCCcEEEEEEecCCCcEEEE---EeCCCCEEEEeCCCC
Q 011709 367 KFEGHSAAVLCVQWSPDKSSVFGS---SAEDGLLNIWDYEKV 405 (479)
Q Consensus 367 ~~~~h~~~v~~l~~~p~~~~llas---~s~Dg~v~iwd~~~~ 405 (479)
.+......|..++|+.++. +||. ......|++|-+.+.
T Consensus 284 ~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 284 PFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence 3444445599999999998 6776 444555999998873
No 296
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.70 E-value=8.1e-06 Score=75.51 Aligned_cols=118 Identities=14% Similarity=0.184 Sum_probs=94.6
Q ss_pred CCCCceEEEEEeeCCCcEEEEEecCC-eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecC
Q 011709 276 GHEDTVEDVTFCPSSAQEFCSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (479)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~ 354 (479)
+|...|.-..+..++. -++.|..|| .+-+||.+++. +......-+.|.++..+| +|.+++.+.....|.+.|+.
T Consensus 357 ~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 357 GKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDID 431 (668)
T ss_pred CCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCce---EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEec
Confidence 4667787777777764 688899999 89999999988 555667778999999999 99999999999999999999
Q ss_pred CCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC----CCEEEEeCCCC
Q 011709 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED----GLLNIWDYEKV 405 (479)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D----g~v~iwd~~~~ 405 (479)
+ +.+...=+...+-|+.+.|||++++ +|-+=-+ ..|+++|+..+
T Consensus 432 n------gnv~~idkS~~~lItdf~~~~nsr~-iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 432 N------GNVRLIDKSEYGLITDFDWHPNSRW-IAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred C------CCeeEecccccceeEEEEEcCCcee-EEEecCcceeeeeEEEEecCCC
Confidence 8 4443333445678999999999995 6665444 46899999873
No 297
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=8.6e-08 Score=84.73 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=109.5
Q ss_pred EEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCC
Q 011709 157 ATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP 236 (479)
Q Consensus 157 at~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 236 (479)
++.+.+-.|-+-|++++.. ..+. +.+.|.++.|...++.+..|..+|.|.+.|++....-
T Consensus 228 fs~G~sqqv~L~nvetg~~-------------qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG----- 287 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-------------QSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG----- 287 (425)
T ss_pred ecccccceeEEEEeecccc-------------cccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC-----
Confidence 3444455677778777621 1222 2245899999998999999999999999999864221
Q ss_pred cccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCC-Cc
Q 011709 237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PV 315 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~ 315 (479)
...+.+.+. |...|+++..-...+..|++.+.+|.|.+||+|.-++ .-
T Consensus 288 ------------------------------~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~ 336 (425)
T KOG2695|consen 288 ------------------------------NGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKS 336 (425)
T ss_pred ------------------------------CCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccc
Confidence 111223333 7888999887664447888999999999999998662 12
Q ss_pred eeeeccCCCCeEE--EEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 316 IKVEKAHDADLHC--VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 316 ~~~~~~~~~~v~~--l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
+..+.+|-..-.- +-..+ ....++++++|...|||.++. +..+.++...
T Consensus 337 V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~------ghLl~tipf~ 387 (425)
T KOG2695|consen 337 VMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDS------GHLLCTIPFP 387 (425)
T ss_pred eeeeeccccccccccccccc-ccceEEEccCeeEEEEEeccc------CceeeccCCC
Confidence 6666677433222 23345 567888899999999999998 7777776543
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.69 E-value=4e-08 Score=60.20 Aligned_cols=38 Identities=34% Similarity=0.860 Sum_probs=35.1
Q ss_pred CceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEe
Q 011709 363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 363 ~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd 401 (479)
+++.++.+|.+.|++|+|+|++. .|++++.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 57889999999999999999988 578999999999997
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.65 E-value=5.4e-06 Score=72.16 Aligned_cols=199 Identities=12% Similarity=0.127 Sum_probs=108.0
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC------CcEEEecC
Q 011709 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE------PYVLSGGK 216 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~------~~l~s~s~ 216 (479)
=..++|+| ++.+||.+...|+|+++|+........ .. ...+.+--..+|.+|.|.+.. ..|+.-..
T Consensus 46 WRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~I-~p------~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y 117 (282)
T PF15492_consen 46 WRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFVI-PP------AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY 117 (282)
T ss_pred heEEEECC-CCcEEEEEcCCCeEEEEecccceeEEc-Cc------ccccCCccccceeeeEeeccccccccceeEEEEec
Confidence 46789999 888999999999999999986532211 11 111122222356677776532 24556666
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCcee--ec-CCCCceEEEEEeeCCCcE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI--YN-GHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~h~~~v~~l~~~~~~~~~ 293 (479)
+|.++-+-+..+... .....+. +. .+...|+++.++|.. ++
T Consensus 118 ~G~L~Sy~vs~gt~q-----------------------------------~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~L 161 (282)
T PF15492_consen 118 RGQLRSYLVSVGTNQ-----------------------------------GYQENHSFSFSSHYPHGINSAVYHPKH-RL 161 (282)
T ss_pred cceeeeEEEEcccCC-----------------------------------cceeeEEEEecccCCCceeEEEEcCCC-CE
Confidence 777777665321110 0000111 22 246789999999998 45
Q ss_pred EEEEe-cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEE-EEeCCCcE------EEEecCCCCCCCCCCce
Q 011709 294 FCSVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSV------RMFDRRNLTSNGVGSPI 365 (479)
Q Consensus 294 l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~-tgs~dg~I------~iwd~~~~~~~~~~~~~ 365 (479)
|+.|+ .... .+. ..+....+++-..-.....+.- +...|+.. .+|.+-+ .+..
T Consensus 162 LlVgG~~~~~-------~~~------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~------~~~f 222 (282)
T PF15492_consen 162 LLVGGCEQNQ-------DGM------SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS------FKFF 222 (282)
T ss_pred EEEeccCCCC-------Ccc------ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc------eeee
Confidence 55544 3331 100 0122223333222211122222 22222211 2222211 1111
Q ss_pred eeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 366 ~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
.........|..|..+|+|. +||+...+|.|.+|++...
T Consensus 223 s~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 223 SRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred eccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcc
Confidence 11123457899999999999 6899999999999999874
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=4.5e-08 Score=96.47 Aligned_cols=191 Identities=18% Similarity=0.241 Sum_probs=131.1
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
..|...-+|++|+- +.+.|+.|+-.|.|+++++.++ .......+|.. +|+-+.-+.+|..+++.+.
T Consensus 1098 rd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG------------~~e~s~ncH~S-avT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSG------------SMEESVNCHQS-AVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred hccccceeeEEeec-CCceEEeeeccceEEEEEccCc------------ccccccccccc-ccccccccCCcceeeeecc
Confidence 46778899999998 7789999999999999999998 34445677886 6899999999986665443
Q ss_pred -CC-cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEE
Q 011709 217 -DK-SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 217 -dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (479)
.. -..+|++.. .+.+++.+. .-.++.|+... ..-
T Consensus 1164 ~S~PlsaLW~~~s---------------------------------------~~~~~Hsf~----ed~~vkFsn~~-q~r 1199 (1516)
T KOG1832|consen 1164 SSSPLSALWDASS---------------------------------------TGGPRHSFD----EDKAVKFSNSL-QFR 1199 (1516)
T ss_pred ccCchHHHhcccc---------------------------------------ccCcccccc----ccceeehhhhH-HHH
Confidence 33 567898853 222233333 24567887654 333
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeec---cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
+.|.......+||+.+... +...+. +....-++..|+| +..+++ .|| .+||.|. ...++.|...
T Consensus 1200 ~~gt~~d~a~~YDvqT~~~-l~tylt~~~~~~y~~n~a~FsP-~D~LIl---ndG--vLWDvR~------~~aIh~FD~f 1266 (1516)
T KOG1832|consen 1200 ALGTEADDALLYDVQTCSP-LQTYLTDTVTSSYSNNLAHFSP-CDTLIL---NDG--VLWDVRI------PEAIHRFDQF 1266 (1516)
T ss_pred HhcccccceEEEecccCcH-HHHhcCcchhhhhhccccccCC-CcceEe---eCc--eeeeecc------HHHHhhhhhh
Confidence 3444445688999999872 222122 2333447899999 777776 455 5799998 5677777655
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+..+. =.|+|+|..++ .-+ .|||+++.
T Consensus 1267 t~~~~-G~FHP~g~eVI-INS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1267 TDYGG-GGFHPSGNEVI-INS-----EIWDMRTF 1293 (1516)
T ss_pred eeccc-ccccCCCceEE-eec-----hhhhhHHH
Confidence 53333 35999998754 333 48999985
No 301
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.61 E-value=3.1e-05 Score=82.02 Aligned_cols=259 Identities=15% Similarity=0.215 Sum_probs=149.8
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCC-------------Cc----------cccCCCCCC-------CC-
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP-------------NR----------HAVLGATNS-------RP- 187 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~-------------~~----------~~~~~~~~~-------~~- 187 (479)
-.+.|.+++|+| |..+||..+.++++.+-+-.=.. .. ....+.... .+
T Consensus 119 vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSP-DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECC-CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 356899999999 88899999999888776432110 00 000010000 00
Q ss_pred -----cEEEeccCCCceeeeeecCCCCcEEEecC---C---CcEEEEecCCCccccccC----CcccccCCCCCceeecC
Q 011709 188 -----DLILTGHQDNAEFALAMCPTEPYVLSGGK---D---KSVVLWSIQDHITSSATD----PATAKSAGSSGSIIKQS 252 (479)
Q Consensus 188 -----~~~~~~h~~~~v~~l~~s~~~~~l~s~s~---d---g~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 252 (479)
...+. +.+. -..++|-.||.++|+.+. . ..||||+-+.. ...... ........++++.++..
T Consensus 198 ~~~~d~~~~s-~dd~-~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~-L~stSE~v~gLe~~l~WrPsG~lIA~~ 274 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDG-RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE-LQSTSEPVDGLEGALSWRPSGNLIASS 274 (928)
T ss_pred CCccccCccc-cCCC-ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce-EEeccccCCCccCCccCCCCCCEEEEE
Confidence 01122 2333 358999999999998764 2 57999997632 211111 12233444455544443
Q ss_pred CCCC-CCCCCCCCCCC---CCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeec-cCCCCeE
Q 011709 253 PKPG-DGNDKAADGPS---VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLH 327 (479)
Q Consensus 253 ~~~~-~~~~~~~~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~ 327 (479)
.... ...+..+.... ++....+......|..+.|++++ .+|+..-.|. |.+|-..+..+-+...+. .....+.
T Consensus 275 q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~ 352 (928)
T PF04762_consen 275 QRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVN 352 (928)
T ss_pred EEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCC
Confidence 3211 11111111111 11111112345679999999999 6788776665 999998887653333332 2334455
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEecCC----CCCCC--CCCceeeec-----------------------CCCCcEEEE
Q 011709 328 CVDWNPLDDNLILTGSADNSVRMFDRRN----LTSNG--VGSPINKFE-----------------------GHSAAVLCV 378 (479)
Q Consensus 328 ~l~~sp~~~~~l~tgs~dg~I~iwd~~~----~~~~~--~~~~~~~~~-----------------------~h~~~v~~l 378 (479)
.+.|+|.+...|...+.+|.+..+++.- ..... ....+..+. .-..+|..+
T Consensus 353 ~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v 432 (928)
T PF04762_consen 353 FVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV 432 (928)
T ss_pred ceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE
Confidence 6999998888888888878776655431 11000 000111111 124689999
Q ss_pred EEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 379 QWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 379 ~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
+|++++.. +|+-..||.|.+|....
T Consensus 433 af~~~~~~-~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 433 AFSPSNSR-FAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEeCCCCe-EEEEECCCCEEEEEecC
Confidence 99999885 67888899999999665
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.58 E-value=2e-07 Score=57.03 Aligned_cols=37 Identities=27% Similarity=0.817 Sum_probs=34.9
Q ss_pred ceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEe
Q 011709 315 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (479)
Q Consensus 315 ~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd 352 (479)
++..+.+|...|++|+|+| ++.+|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 5678889999999999999 899999999999999997
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.56 E-value=4.1e-05 Score=69.06 Aligned_cols=193 Identities=13% Similarity=0.122 Sum_probs=120.8
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEe--ccCCCceeeeeecCCCCcEEEe
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
+..++ ...+.+...++.++++. .. .+.++|..++. .+...... .+.....+.+++.++|++.++.
T Consensus 37 ~~~~~-~~G~~~~~~~g~l~v~~-~~-~~~~~d~~~g~----------~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~ 103 (246)
T PF08450_consen 37 IDLPG-PNGMAFDRPDGRLYVAD-SG-GIAVVDPDTGK----------VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTD 103 (246)
T ss_dssp EESSS-EEEEEEECTTSEEEEEE-TT-CEEEEETTTTE----------EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEE
T ss_pred EecCC-CceEEEEccCCEEEEEE-cC-ceEEEecCCCc----------EEEEeeccCCCcccCCCceEEEcCCCCEEEEe
Confidence 33344 66677773366555554 33 46666888762 12222221 1133356899999999866665
Q ss_pred cCC--------CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 215 GKD--------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 215 s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
... |.|..++.. +.. ..+...-...+.++|
T Consensus 104 ~~~~~~~~~~~g~v~~~~~~-~~~-----------------------------------------~~~~~~~~~pNGi~~ 141 (246)
T PF08450_consen 104 SGGGGASGIDPGSVYRIDPD-GKV-----------------------------------------TVVADGLGFPNGIAF 141 (246)
T ss_dssp ECCBCTTCGGSEEEEEEETT-SEE-----------------------------------------EEEEEEESSEEEEEE
T ss_pred cCCCccccccccceEEECCC-CeE-----------------------------------------EEEecCcccccceEE
Confidence 433 445555554 111 112222345789999
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCCCCc-----eeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCC
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGTSPV-----IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~ 361 (479)
+|++..++++-+..+.|..+|+......+ ...+....+..-.+++.. ++++.++....+.|.++|.+
T Consensus 142 s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~------- 213 (246)
T PF08450_consen 142 SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD------- 213 (246)
T ss_dssp ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-------
T ss_pred CCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-------
Confidence 99996666788888999999997543211 111112223478899999 89998888889999999987
Q ss_pred CCceeeecCCCCcEEEEEEe-cCCCcEEEEEe
Q 011709 362 GSPINKFEGHSAAVLCVQWS-PDKSSVFGSSA 392 (479)
Q Consensus 362 ~~~~~~~~~h~~~v~~l~~~-p~~~~llas~s 392 (479)
++.+..+......+++++|. ++...|++|.+
T Consensus 214 G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 214 GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 57777777666689999994 67677777764
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=4.6e-06 Score=82.04 Aligned_cols=187 Identities=17% Similarity=0.230 Sum_probs=126.7
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg 218 (479)
..+.+.|+++ ....||-|+-+|.|++.+..... .+...|... ..+|.+++|||.||
T Consensus 38 ~~D~is~~av---~~~~~~~GtH~g~v~~~~~~~~~--------------~~~~~~s~~-------~~~Gey~asCS~DG 93 (846)
T KOG2066|consen 38 QNDAISCCAV---HDKFFALGTHRGAVYLTTCQGNP--------------KTNFDHSSS-------ILEGEYVASCSDDG 93 (846)
T ss_pred hhhHHHHHHh---hcceeeeccccceEEEEecCCcc--------------ccccccccc-------ccCCceEEEecCCC
Confidence 3456777777 44699999999999999987651 222333321 45789999999999
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC----CCcEE
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS----SAQEF 294 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l 294 (479)
+|.|-.+-+.... .. .....++.+++++|+ ....|
T Consensus 94 kv~I~sl~~~~~~----------------------------------------~~-~df~rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 94 KVVIGSLFTDDEI----------------------------------------TQ-YDFKRPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred cEEEeeccCCccc----------------------------------------ee-EecCCcceeEEeccchhhhhhhhe
Confidence 9999877543221 11 123467899999997 23579
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC-
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA- 373 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~- 373 (479)
++|+.-| +.++.-+-........+....++|.++.| .|++||=++++| |+|||+.. .+.+..+.....
T Consensus 133 v~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~------~~~l~~i~~p~~~ 201 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPT------RQRLTNIPPPSQS 201 (846)
T ss_pred eecCcce-EEEehhhhhcCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccc------cceeeccCCCCCC
Confidence 9999998 77776443221111235567899999999 568998888776 69999987 344444332222
Q ss_pred -----cEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 374 -----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 374 -----~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
....+.|.++.+ |+.| ...+|+|..++.
T Consensus 202 ~R~e~fpphl~W~~~~~--LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 202 VRPELFPPHLHWQDEDR--LVIG-WGDSVKICSIKK 234 (846)
T ss_pred CCcccCCCceEecCCCe--EEEe-cCCeEEEEEEec
Confidence 234688988876 3234 445799999884
No 305
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.54 E-value=0.00027 Score=65.98 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=75.7
Q ss_pred EEee-CCCcEEEEEecCCeEEEEeCCCCCCC---ceeeec-------cCCCCeEEEEecCCCCcEEEEEe----------
Q 011709 285 TFCP-SSAQEFCSVGDDSCLILWDARVGTSP---VIKVEK-------AHDADLHCVDWNPLDDNLILTGS---------- 343 (479)
Q Consensus 285 ~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~-------~~~~~v~~l~~sp~~~~~l~tgs---------- 343 (479)
.|.+ ++ ..++...+ |+|.+.|+...... ....+. -..+.+.-++++| +++.++...
T Consensus 200 ~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 200 AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred ceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccC
Confidence 4455 66 45555445 99999997554311 111111 1334455699999 777766642
Q ss_pred CCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCC-cEEEEEeCCCCEEEEeCCCC
Q 011709 344 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 344 ~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~llas~s~Dg~v~iwd~~~~ 405 (479)
..+.|.++|..+ ++.+..+.. ...+..++++|+++ .++++...++.|.+.|+.+.
T Consensus 277 ~~~~V~ViD~~t------~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 277 ASRFLFVVDAKT------GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCCEEEEEECCC------CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 225799999988 677777663 45789999999999 76666667899999999884
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.1e-06 Score=80.58 Aligned_cols=260 Identities=12% Similarity=0.091 Sum_probs=168.0
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
.-|.+.|+.+... -.+++.+++.||.++.|--.... ....+..+..|.. .+.+++.+-++..+.|.+.
T Consensus 6 ymhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~is---------GvEfVKhFraHL~-~I~sl~~S~dg~L~~Sv~d 73 (558)
T KOG0882|consen 6 YMHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRIS---------GVEFVKHFRAHLG-VILSLAVSYDGWLFRSVED 73 (558)
T ss_pred hcccceeeeEeee--hhheEEeeecchhhhhcCCCCcc---------ceeehhhhHHHHH-HHHhhhccccceeEeeccC
Confidence 4688888887544 45699999999999999765421 1234445667775 5889999999988999777
Q ss_pred -CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC--cE
Q 011709 217 -DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA--QE 293 (479)
Q Consensus 217 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~ 293 (479)
|..++++|+.+-....... +.--.+.+ ++..++... .+
T Consensus 74 ~Dhs~KvfDvEn~DminmiK--------------------------------------L~~lPg~a-~wv~skGd~~s~I 114 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIK--------------------------------------LVDLPGFA-EWVTSKGDKISLI 114 (558)
T ss_pred cccceeEEEeeccchhhhcc--------------------------------------cccCCCce-EEecCCCCeeeeE
Confidence 9999999997643221110 00011111 111122111 23
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCC-C---CCCC-----CCCc
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN-L---TSNG-----VGSP 364 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~-~---~~~~-----~~~~ 364 (479)
-++.-.+|.+.++|-+...++......-|..+|.++.++| .+..+++....|.|.-|.... . .... ...-
T Consensus 115 AVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd 193 (558)
T KOG0882|consen 115 AVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD 193 (558)
T ss_pred EeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccch
Confidence 3344567899999999877666666678999999999999 899999999999999998873 1 1000 0011
Q ss_pred eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC------CCCCeeEEEeCC----------
Q 011709 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT------NYPAGLFFQHAG---------- 428 (479)
Q Consensus 365 ~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~------~~~~~l~~~~~g---------- 428 (479)
+..+.......+++.|+|++.. +++-+.|..|+++++..+...+..++... ..|-.+.-+--|
T Consensus 194 Ly~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele 272 (558)
T KOG0882|consen 194 LYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE 272 (558)
T ss_pred hhcccccccCccceEEccccCc-ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence 2222334457789999999996 78888999999999998543333322211 111111111111
Q ss_pred -C--CCceeEEEecCCCeeeecCC
Q 011709 429 -H--SPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 429 -h--~~~~~~~~sp~~~~l~~~~~ 449 (479)
| ...+.+.|.-.+.+|+.+.-
T Consensus 273 k~~~~~~~~~~fdes~~flly~t~ 296 (558)
T KOG0882|consen 273 KHGSTVGTNAVFDESGNFLLYGTI 296 (558)
T ss_pred hhcCcccceeEEcCCCCEEEeecc
Confidence 1 12367788888888877654
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=6.4e-06 Score=81.09 Aligned_cols=189 Identities=12% Similarity=0.177 Sum_probs=123.6
Q ss_pred ceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC
Q 011709 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (479)
.++|++++ +++|+-|+.+|.|++.+..... .....|
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~------------------------------------------~~~~~~ 76 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP------------------------------------------KTNFDH 76 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc------------------------------------------cccccc
Confidence 35666665 5689999999999999876321 111123
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCC----CCcEEEEEeCCCcEEEEec
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL----DDNLILTGSADNSVRMFDR 353 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~----~~~~l~tgs~dg~I~iwd~ 353 (479)
... ..+| .+++||+.||+|.|-.+-+.+. .... .-..++.+++++|+ ..+.+++||..| +.++.-
T Consensus 77 s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~--~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er 145 (846)
T KOG2066|consen 77 SSS------ILEG-EYVASCSDDGKVVIGSLFTDDE--ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSER 145 (846)
T ss_pred ccc------ccCC-ceEEEecCCCcEEEeeccCCcc--ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehh
Confidence 332 4456 6899999999999999988773 2222 34578999999993 267899999999 888776
Q ss_pred CCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCce
Q 011709 354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSS 433 (479)
Q Consensus 354 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~ 433 (479)
+-... +.-..+..-.++|.++.|..+ ++|-++.+| |+|||+.................++ ....
T Consensus 146 ~wlgn----k~~v~l~~~eG~I~~i~W~g~---lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e--------~fpp 209 (846)
T KOG2066|consen 146 NWLGN----KDSVVLSEGEGPIHSIKWRGN---LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPE--------LFPP 209 (846)
T ss_pred hhhcC----ccceeeecCccceEEEEecCc---EEEEecCCC-cEEEeccccceeeccCCCCCCCCcc--------cCCC
Confidence 54321 111245666789999999744 788888777 9999998842222111111101111 1136
Q ss_pred eEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 434 SIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 434 ~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.+.|.++.+.++.=++ +|+|..+.
T Consensus 210 hl~W~~~~~LVIGW~d-------~v~i~~I~ 233 (846)
T KOG2066|consen 210 HLHWQDEDRLVIGWGD-------SVKICSIK 233 (846)
T ss_pred ceEecCCCeEEEecCC-------eEEEEEEe
Confidence 7888888777765555 66666554
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.5e-05 Score=72.27 Aligned_cols=79 Identities=10% Similarity=0.063 Sum_probs=65.3
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEec
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGG 215 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s 215 (479)
..|...|..++|+|.+.-++..++-+..|+|.|+++. .....+..|. .+++++|.-+.. ++..|.
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~------------~~vssy~a~~--~~wSC~wDlde~h~IYaGl 255 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS------------CVVSSYIAYN--QIWSCCWDLDERHVIYAGL 255 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccc------------eeeeheeccC--CceeeeeccCCcceeEEec
Confidence 3566789999999977668999999999999999987 4555666664 489999998865 788888
Q ss_pred CCCcEEEEecCCCc
Q 011709 216 KDKSVVLWSIQDHI 229 (479)
Q Consensus 216 ~dg~i~vwd~~~~~ 229 (479)
.+|.|.++|++...
T Consensus 256 ~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 256 QNGMVLVYDMRQPE 269 (463)
T ss_pred cCceEEEEEccCCC
Confidence 99999999998643
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.49 E-value=1.3e-05 Score=76.75 Aligned_cols=151 Identities=14% Similarity=0.214 Sum_probs=98.0
Q ss_pred eEEEEEeeCCCcEEEEE----ecCCe----EEEEeCCCCCCCcee-eeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEE
Q 011709 281 VEDVTFCPSSAQEFCSV----GDDSC----LILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 351 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~----~~dg~----i~iwd~~~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iw 351 (479)
..++.|+-..++.+.+. +.+|. -.+|++...+...+. +.-..+..|.+++++| +...++.|+.||+|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEE
Confidence 35677776555666653 23443 346777655422221 1226788999999999 99999999999999999
Q ss_pred ecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC
Q 011709 352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP 431 (479)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~ 431 (479)
|... .+..+....-.++.++|||+|. +|++|+..|.+.+||+.-..-..... .++ ..|........|..
T Consensus 287 D~~~--------~~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLl-sEd-~~P~~~L~Ls~yf~ 355 (545)
T PF11768_consen 287 DTTR--------GVTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLL-SED-ATPKSTLQLSKYFR 355 (545)
T ss_pred EcCC--------CeeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeec-ccc-CCCccEEeeehhcc
Confidence 9976 2333334556788999999999 68899999999999987643222221 111 11222233333332
Q ss_pred ----ceeEEEecCCCe
Q 011709 432 ----SSSIKFVLRESC 443 (479)
Q Consensus 432 ----~~~~~~sp~~~~ 443 (479)
...+.|++....
T Consensus 356 ~~~~L~~iqW~~~~~~ 371 (545)
T PF11768_consen 356 VSSSLVHIQWAPAPQL 371 (545)
T ss_pred CcchhheeEeccCCCc
Confidence 678999865433
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.49 E-value=0.00028 Score=63.54 Aligned_cols=231 Identities=13% Similarity=0.193 Sum_probs=139.4
Q ss_pred CceeEEEecCCCCcEEEEEeCCC-cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC---
Q 011709 141 GEVNRIRELPQNTKIVATHTDSP-DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK--- 216 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~--- 216 (479)
.....++.+|..+..+|.+-.-| ...+||..++........ ..-..|.|| -.||++|++|++.-.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a----~~gRHFyGH-------g~fs~dG~~LytTEnd~~ 73 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA----PPGRHFYGH-------GVFSPDGRLLYTTENDYE 73 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC----CCCCEEecC-------EEEcCCCCEEEEeccccC
Confidence 34456778887788888888777 477899998843322111 122233333 368999999987543
Q ss_pred --CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEE
Q 011709 217 --DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 217 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (479)
.|.|-|||..... ..+..+..|.-.-..+.+.|+++. |
T Consensus 74 ~g~G~IgVyd~~~~~---------------------------------------~ri~E~~s~GIGPHel~l~pDG~t-L 113 (305)
T PF07433_consen 74 TGRGVIGVYDAARGY---------------------------------------RRIGEFPSHGIGPHELLLMPDGET-L 113 (305)
T ss_pred CCcEEEEEEECcCCc---------------------------------------EEEeEecCCCcChhhEEEcCCCCE-E
Confidence 5899999997321 112334444444556777888743 3
Q ss_pred EEEe------------------cCCeEEEEeCCCCCCCceee--e--ccCCCCeEEEEecCCCCcEEEEEeCCCc-----
Q 011709 295 CSVG------------------DDSCLILWDARVGTSPVIKV--E--KAHDADLHCVDWNPLDDNLILTGSADNS----- 347 (479)
Q Consensus 295 ~s~~------------------~dg~i~iwd~~~~~~~~~~~--~--~~~~~~v~~l~~sp~~~~~l~tgs~dg~----- 347 (479)
+.+. .+..+.+-|.++++ ++.. + .-|.-.|..+++++ ++..++..-..|.
T Consensus 114 vVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~--ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~ 190 (305)
T PF07433_consen 114 VVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA--LLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAP 190 (305)
T ss_pred EEEcCCCccCcccCceecChhhcCCceEEEecCCCc--eeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccC
Confidence 3321 13445555666666 3333 3 23667888999998 7766665554442
Q ss_pred --EEEEecCCCCCCCCCCceeeec-------CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCC
Q 011709 348 --VRMFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY 418 (479)
Q Consensus 348 --I~iwd~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~ 418 (479)
|-+++.. ..+..+. .-.+-|-+|++++++..+.+|+=..+.+.+||..++ ..+..
T Consensus 191 PLva~~~~g--------~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg-~~~~~------- 254 (305)
T PF07433_consen 191 PLVALHRRG--------GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG-RLLGS------- 254 (305)
T ss_pred CeEEEEcCC--------CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC-CEeec-------
Confidence 3333332 2222222 234578899999999977777777999999999884 22211
Q ss_pred CCeeEEEeCCCCCceeEEEecCCCeeeecCCC
Q 011709 419 PAGLFFQHAGHSPSSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 419 ~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~ 450 (479)
..-..+..++-.+++ ++++.|.+
T Consensus 255 --------~~l~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 255 --------VPLPDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred --------cccCceeeeeecCCc-eEEeCCCc
Confidence 111224556666665 77777764
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.48 E-value=4e-06 Score=83.47 Aligned_cols=186 Identities=10% Similarity=0.175 Sum_probs=128.9
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccc
Q 011709 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (479)
Q Consensus 152 ~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~ 231 (479)
++..+.-|+-...+..+|+.+.. ......-.. +.|+-|. .+++.|.+|...|+|.+-|.++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~------------e~r~~~v~a-~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~--- 207 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEK------------ETRTTNVSA-SGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF--- 207 (1118)
T ss_pred CCcceeecchhhheeeeecccce------------eeeeeeccC-CceEEEE--ecCcEEEeecccceEEeecCCcC---
Confidence 44556667666678888888762 222222222 2243444 45788999999999999998643
Q ss_pred cccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec---------CCe
Q 011709 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD---------DSC 302 (479)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---------dg~ 302 (479)
+.++.+..|++.|.++..+ | ++|++|+. |..
T Consensus 208 -------------------------------------~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~F 247 (1118)
T KOG1275|consen 208 -------------------------------------ETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPF 247 (1118)
T ss_pred -------------------------------------ceeeeeeccccceeeeecc--C-CeEEEeecccccccccccch
Confidence 3347888999999887764 5 68888875 667
Q ss_pred EEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEec
Q 011709 303 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 382 (479)
Q Consensus 303 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 382 (479)
|++||+|+.+ .+..+.-+.+ -.-+.|.|.-...++..+..|...+-|....... ..-+..+......+.++.+++
T Consensus 248 vkVYDLRmmr--al~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~~s~i~~fDiSs 322 (1118)
T KOG1275|consen 248 VKVYDLRMMR--ALSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNPNGSGISAFDISS 322 (1118)
T ss_pred hhhhhhhhhh--ccCCcccccC-chhhhhcccccceEEEEecccceeeccccccCCC--ccceeEEccCCCcceeEEecC
Confidence 8999999977 3333322222 2567888866788999999999999995443210 011223333445699999999
Q ss_pred CCCcEEEEEeCCCCEEEEe
Q 011709 383 DKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 383 ~~~~llas~s~Dg~v~iwd 401 (479)
++. .+|.|..+|.|.+|-
T Consensus 323 n~~-alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 323 NGD-ALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCc-eEEEecccCcEeeec
Confidence 999 588999999999998
No 312
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.42 E-value=2.2e-07 Score=88.81 Aligned_cols=218 Identities=15% Similarity=0.239 Sum_probs=136.6
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeC----CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTD----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
+-+|....++++|++-+.++||+|-. |..+.|||+.+....+ .....+.+.......+++|-.+.+.+
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP--------ke~~~fs~~~l~gqns~cwlrd~klv 169 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP--------KESPLFSSSTLDGQNSVCWLRDTKLV 169 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC--------ccccccccccccCccccccccCcchh
Confidence 34677889999999988889998843 6689999999873211 11112222122235689999888899
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
++|...+.+.++|++.... ....-.+..+..+...|-..
T Consensus 170 laGm~sr~~~ifdlRqs~~-----------------------------------------~~~svnTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 170 LAGMTSRSVHIFDLRQSLD-----------------------------------------SVSSVNTKYVQGITVDPFSP 208 (783)
T ss_pred hcccccchhhhhhhhhhhh-----------------------------------------hhhhhhhhhcccceecCCCC
Confidence 9999999999999973211 01111234567778888555
Q ss_pred cEEEEEecCCeEEEEe-CCCCCCCceeeec---cCCCCeEEEEecCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCC--c
Q 011709 292 QEFCSVGDDSCLILWD-ARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGS--P 364 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~l~tgs~d-g~I~iwd~~~~~~~~~~~--~ 364 (479)
.++++-. ||.|.+|| .+.-+.++..... .....+..++|+|....++++.+.| ++|++||++.-....... .
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~ 287 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSV 287 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccc
Confidence 6676655 99999999 5554443332221 1223489999999777788888776 689999998643221111 1
Q ss_pred eee------ecCC--CCcEEEEEEecCCC-cEEEEEeCCCCEEEEeCC
Q 011709 365 INK------FEGH--SAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 365 ~~~------~~~h--~~~v~~l~~~p~~~-~llas~s~Dg~v~iwd~~ 403 (479)
... ++.. -..|.+..||+..+ .....+-..-++.-+++.
T Consensus 288 ~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 288 FVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred eeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence 111 1211 24678888887652 122244445455555544
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.6e-06 Score=78.51 Aligned_cols=133 Identities=13% Similarity=0.177 Sum_probs=96.9
Q ss_pred CCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEE
Q 011709 261 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL 340 (479)
Q Consensus 261 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~ 340 (479)
...+.....+...+.+|...|.+++|+|....++..++.+..|+|.|+++.. ++..+..+ ..+++++|.-++.++|+
T Consensus 176 ~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 176 QKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred EEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce--eeeheecc-CCceeeeeccCCcceeE
Confidence 3334455555567778888999999999886688999999999999999988 66666666 78999999997789999
Q ss_pred EEeCCCcEEEEecCCCCCCCCCCceeeecC--CCCcEEEEEE------ecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 341 TGSADNSVRMFDRRNLTSNGVGSPINKFEG--HSAAVLCVQW------SPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 341 tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~------~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
+|...|.|.|||+|... .++.++.+ ...+|..++. .+.+. +|+..+.+ +..|++..
T Consensus 253 aGl~nG~VlvyD~R~~~-----~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~~ 316 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPE-----GPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIVF 316 (463)
T ss_pred EeccCceEEEEEccCCC-----chHhhhhhhhccCcceeecccCccccccccc-eEEeeehh--hhhhhhhc
Confidence 99999999999999864 34444433 2234444332 23344 55444433 66787765
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00012 Score=73.07 Aligned_cols=209 Identities=10% Similarity=0.148 Sum_probs=131.0
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC---
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK--- 218 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg--- 218 (479)
.|.|+ ++ ++..+|.|+.+|.|.+.+-.- +.+..+..+..+.|..+....+..+|++.+.|+
T Consensus 27 ~isc~--~s-~~~~vvigt~~G~V~~Ln~s~-------------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~n 90 (933)
T KOG2114|consen 27 AISCC--SS-STGSVVIGTADGRVVILNSSF-------------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGN 90 (933)
T ss_pred ceeEE--cC-CCceEEEeeccccEEEecccc-------------eeeehheecchhhhhHhhcccCceEEEEEeecCCCC
Confidence 45544 45 667999999999988876442 333556666665343443333446888877765
Q ss_pred --cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCcee--ecCCCCceEEEEEeeCCCcEE
Q 011709 219 --SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI--YNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 219 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l 294 (479)
.|++|+++....... +. ++. .. .+.. ......++.+++.+.+- ..+
T Consensus 91 p~llkiw~lek~~~n~s--P~----------c~~----------------~~-ri~~~~np~~~~p~s~l~Vs~~l-~~I 140 (933)
T KOG2114|consen 91 PVLLKIWDLEKVDKNNS--PQ----------CLY----------------EH-RIFTIKNPTNPSPASSLAVSEDL-KTI 140 (933)
T ss_pred ceEEEEecccccCCCCC--cc----------eee----------------ee-eeeccCCCCCCCcceEEEEEccc-cEE
Confidence 489999975322110 00 000 00 0000 11135578888998886 789
Q ss_pred EEEecCCeEEEEeCC--CCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCc-eeeecCC
Q 011709 295 CSVGDDSCLILWDAR--VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP-INKFEGH 371 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-~~~~~~h 371 (479)
|.|-.+|.|..+--. ..+..-.........+|+.+++.. ++..++-...-..|.+|.+.. ..| +..+..|
T Consensus 141 v~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~g------r~p~~~~ld~~ 213 (933)
T KOG2114|consen 141 VCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSG------RTPSLKVLDNN 213 (933)
T ss_pred EEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecC------CCcceeeeccC
Confidence 999999999988422 111111222334568999999987 666533333456899999985 233 4558888
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
...++|..|++....++ +++ +.-+.+||....
T Consensus 214 G~~lnCss~~~~t~qfI-ca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 214 GISLNCSSFSDGTYQFI-CAG-SEFLYFYDSDGR 245 (933)
T ss_pred CccceeeecCCCCccEE-Eec-CceEEEEcCCCc
Confidence 89999999998776444 554 446999998764
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1e-05 Score=74.32 Aligned_cols=207 Identities=13% Similarity=0.058 Sum_probs=135.5
Q ss_pred CCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 207 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
..+++++++.||.++.|.-... .....+..+..|...|.+++.
T Consensus 19 ka~fiiqASlDGh~KFWkKs~i-------------------------------------sGvEfVKhFraHL~~I~sl~~ 61 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRI-------------------------------------SGVEFVKHFRAHLGVILSLAV 61 (558)
T ss_pred hhheEEeeecchhhhhcCCCCc-------------------------------------cceeehhhhHHHHHHHHhhhc
Confidence 4568999999999999975420 111122445668888999999
Q ss_pred eeCCCcEEEEEec-CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCC-cEEEEEe-CCCcEEEEecCCCCCCCCCC
Q 011709 287 CPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-NLILTGS-ADNSVRMFDRRNLTSNGVGS 363 (479)
Q Consensus 287 ~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~~l~tgs-~dg~I~iwd~~~~~~~~~~~ 363 (479)
+-++ .++.|.+. |..++++|+.+-.......+.--++.+ +...+|.+. ..|+.+. .+|.|.++|-+... .+
T Consensus 62 S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~----~q 135 (558)
T KOG0882|consen 62 SYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF----CQ 135 (558)
T ss_pred cccc-eeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCc----Cc
Confidence 9888 78889787 999999999886632112221222222 223333111 1344433 46899999988632 23
Q ss_pred ceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCC---CCCCCCCeeEEEeCCCCCceeEEEecC
Q 011709 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP---RTTNYPAGLFFQHAGHSPSSSIKFVLR 440 (479)
Q Consensus 364 ~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~---~~~~~~~~l~~~~~gh~~~~~~~~sp~ 440 (479)
....-..|..+|.++.++|.+.. ++|....|.|.-|..... -+.+.. .+.....-|+-.....+..+++.|+|+
T Consensus 136 ~~~fkklH~sPV~~i~y~qa~Ds-~vSiD~~gmVEyWs~e~~--~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~ 212 (558)
T KOG0882|consen 136 DGYFKKLHFSPVKKIRYNQAGDS-AVSIDISGMVEYWSAEGP--FQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD 212 (558)
T ss_pred cceecccccCceEEEEeeccccc-eeeccccceeEeecCCCc--ccCccccccccccccchhhcccccccCccceEEccc
Confidence 44555679999999999999985 568888899999998731 111111 111111122223334444799999999
Q ss_pred CCeeeecCCCccccceeEEEEeec
Q 011709 441 ESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 441 ~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
+..+.+-+. |-.|+++...
T Consensus 213 g~qistl~~-----DrkVR~F~~K 231 (558)
T KOG0882|consen 213 GAQISTLNP-----DRKVRGFVFK 231 (558)
T ss_pred cCcccccCc-----ccEEEEEEec
Confidence 999999888 8999988543
No 316
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.32 E-value=0.00025 Score=68.51 Aligned_cols=220 Identities=15% Similarity=0.125 Sum_probs=117.2
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCcccc
Q 011709 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 232 (479)
Q Consensus 153 ~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~ 232 (479)
+..+++++.+|.|.-+|..+++.. ........ ...... .++..++.++.+|.+..+|..++....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~------------W~~~~~~~-~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W 129 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRL------------WRVDLDER-LSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELW 129 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEe------------eeecCCCC-cccceE--EcCCEEEEEcCCCEEEEEECCCCcEee
Confidence 447778888899999998888322 22211111 011111 246678888889999999998775533
Q ss_pred ccCCcccccCC--CCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCce-----EEEEEeeCCCcEEEEEecCCeEEE
Q 011709 233 ATDPATAKSAG--SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV-----EDVTFCPSSAQEFCSVGDDSCLIL 305 (479)
Q Consensus 233 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~i 305 (479)
........... .....+... ...+.+..++..+++.+..+......+ .+.... ++ .++.+..+|.+..
T Consensus 130 ~~~~~~~~~~~p~v~~~~v~v~--~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~--~v~~~~~~g~v~a 204 (377)
T TIGR03300 130 RAKLSSEVLSPPLVANGLVVVR--TNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG--GVLVGFAGGKLVA 204 (377)
T ss_pred eeccCceeecCCEEECCEEEEE--CCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC--EEEEECCCCEEEE
Confidence 22211110000 001111111 223445555655555444433222111 111111 22 5677888899999
Q ss_pred EeCCCCCCCceeeec-cCCC---C---eEEEEecC-CCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEE
Q 011709 306 WDARVGTSPVIKVEK-AHDA---D---LHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (479)
Q Consensus 306 wd~~~~~~~~~~~~~-~~~~---~---v~~l~~sp-~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 377 (479)
+|.++++ .+.... .... . +..+.-+| ..+..+++++.+|.++.||.++ ++.+..... .....
T Consensus 205 ld~~tG~--~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t------G~~~W~~~~--~~~~~ 274 (377)
T TIGR03300 205 LDLQTGQ--PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS------GRVLWKRDA--SSYQG 274 (377)
T ss_pred EEccCCC--EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC------CcEEEeecc--CCccC
Confidence 9999887 232211 1000 0 00011111 0245788888999999999987 666555442 11122
Q ss_pred EEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 378 l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
... .+.+++ .++.||.+..+|..++
T Consensus 275 p~~--~~~~vy-v~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 275 PAV--DDNRLY-VTDADGVVVALDRRSG 299 (377)
T ss_pred ceE--eCCEEE-EECCCCeEEEEECCCC
Confidence 222 344444 6678999999999874
No 317
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.32 E-value=0.00025 Score=68.51 Aligned_cols=218 Identities=16% Similarity=0.091 Sum_probs=112.5
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccc
Q 011709 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (479)
Q Consensus 152 ~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~ 231 (479)
++..++.++.+|.++.+|..+++... ..... ..+.+.-.. .+..++.++.+|.|..||.+++...
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W------------~~~~~--~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELW------------RAKLS--SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEee------------eeccC--ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCcee
Confidence 34567788889999999998874322 11111 111111001 2456777778999999999877543
Q ss_pred cccCCcccc---cCCC----CCceeecCCCCCCCCCCCCCCCCCCCceeecC-----CC--Cc---e-EEEEEeeCCCcE
Q 011709 232 SATDPATAK---SAGS----SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-----HE--DT---V-EDVTFCPSSAQE 293 (479)
Q Consensus 232 ~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~--~~---v-~~l~~~~~~~~~ 293 (479)
......... .... ....+... ...+.+...+..++..+..... .. .. + ....+ .+ ..
T Consensus 169 W~~~~~~~~~~~~~~~sp~~~~~~v~~~--~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~-~~ 243 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVIADGGVLVG--FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DG-GQ 243 (377)
T ss_pred eEEccCCCceeecCCCCCEEECCEEEEE--CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--EC-CE
Confidence 221111000 0000 00111111 1112222233333322211110 00 00 0 01111 13 35
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC-C
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-S 372 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h-~ 372 (479)
++.++.+|.+..||..+++ .+.... .. ....... .+..++.++.||.|..+|..+ ++.+...... .
T Consensus 244 vy~~~~~g~l~a~d~~tG~--~~W~~~-~~-~~~~p~~---~~~~vyv~~~~G~l~~~d~~t------G~~~W~~~~~~~ 310 (377)
T TIGR03300 244 VYAVSYQGRVAALDLRSGR--VLWKRD-AS-SYQGPAV---DDNRLYVTDADGVVVALDRRS------GSELWKNDELKY 310 (377)
T ss_pred EEEEEcCCEEEEEECCCCc--EEEeec-cC-CccCceE---eCCEEEEECCCCeEEEEECCC------CcEEEccccccC
Confidence 7778889999999999887 333332 11 1222222 456788888999999999987 6666554221 1
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
....+... .+.. +++++.+|.|.++|..++
T Consensus 311 ~~~ssp~i--~g~~-l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 311 RQLTAPAV--VGGY-LVVGDFEGYLHWLSREDG 340 (377)
T ss_pred CccccCEE--ECCE-EEEEeCCCEEEEEECCCC
Confidence 12222222 2443 558889999999998874
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=9.1e-07 Score=87.58 Aligned_cols=190 Identities=14% Similarity=0.199 Sum_probs=128.0
Q ss_pred CCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCC
Q 011709 186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265 (479)
Q Consensus 186 ~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (479)
+....+..|+. .-+|++|+-..++|+.|+..|.|+++++.++...
T Consensus 1092 r~w~~frd~~~-~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---------------------------------- 1136 (1516)
T KOG1832|consen 1092 RSWRSFRDETA-LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---------------------------------- 1136 (1516)
T ss_pred ccchhhhcccc-ceeeEEeecCCceEEeeeccceEEEEEccCcccc----------------------------------
Confidence 44556777776 4789999999999999999999999999765442
Q ss_pred CCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC-eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC
Q 011709 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 344 (479)
Q Consensus 266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~ 344 (479)
....+|...|+-+.-+.+|...|.+++... ...+|++..--. ..+.+ ..-.++.|+. ....-+.|+.
T Consensus 1137 ------~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~-~~Hsf----~ed~~vkFsn-~~q~r~~gt~ 1204 (1516)
T KOG1832|consen 1137 ------ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG-PRHSF----DEDKAVKFSN-SLQFRALGTE 1204 (1516)
T ss_pred ------ccccccccccccccccCCcceeeeeccccCchHHHhccccccC-ccccc----cccceeehhh-hHHHHHhccc
Confidence 446679999999998889966565555554 578999876322 23333 2346788987 4555556666
Q ss_pred CCcEEEEecCCCCCCCCCCceeee-cC---CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCC
Q 011709 345 DNSVRMFDRRNLTSNGVGSPINKF-EG---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 420 (479)
Q Consensus 345 dg~I~iwd~~~~~~~~~~~~~~~~-~~---h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 420 (479)
.....|||+.+ +.++.++ .+ ..-.-++..|+|+...+| .||. +||++.. ..+..++.
T Consensus 1205 ~d~a~~YDvqT------~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl----ndGv--LWDvR~~-~aIh~FD~------ 1265 (1516)
T KOG1832|consen 1205 ADDALLYDVQT------CSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL----NDGV--LWDVRIP-EAIHRFDQ------ 1265 (1516)
T ss_pred ccceEEEeccc------CcHHHHhcCcchhhhhhccccccCCCcceEe----eCce--eeeeccH-HHHhhhhh------
Confidence 67889999998 5666653 21 122337789999998544 4664 7999984 22221111
Q ss_pred eeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 421 GLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 421 ~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
.+.-..-.|+|.|..++..+.
T Consensus 1266 --------ft~~~~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1266 --------FTDYGGGGFHPSGNEVIINSE 1286 (1516)
T ss_pred --------heecccccccCCCceEEeech
Confidence 111123356777777776666
No 319
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.21 E-value=2.3e-05 Score=75.12 Aligned_cols=79 Identities=11% Similarity=0.184 Sum_probs=65.0
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
....+..+..|.+++++| +...|+.|..||+|.+||..++. ..+.... -..+.++|+|+|..++
T Consensus 252 svtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~--------------t~~~ka~-~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGV--------------TLLAKAE-FIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCe--------------eeeeeec-ccceEEEEcCCCcEEE
Confidence 456688999999999999 77899999999999999998762 1122222 2357999999999999
Q ss_pred EecCCCcEEEEecCC
Q 011709 213 SGGKDKSVVLWSIQD 227 (479)
Q Consensus 213 s~s~dg~i~vwd~~~ 227 (479)
+|+..|.+.+||+.-
T Consensus 316 V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 316 VGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCceEEEEEeec
Confidence 999999999999863
No 320
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.21 E-value=0.00041 Score=61.52 Aligned_cols=208 Identities=16% Similarity=0.280 Sum_probs=114.5
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCc
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~ 219 (479)
...+..|+|.|+++.++|+....+.|...+.+.. . .....+.+..+ .-+|++..++.++++.-.++.
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~-v----------lr~i~l~g~~D--~EgI~y~g~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK-V----------LRRIPLDGFGD--YEGITYLGNGRYVLSEERDQR 87 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E----------EEEEE-SS-SS--EEEEEE-STTEEEEEETTTTE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC-E----------EEEEeCCCCCC--ceeEEEECCCEEEEEEcCCCc
Confidence 4569999999977888888888889988887532 1 11123444443 468999888877777767999
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
+.++++............ .... +.....++..+..++|.+.+.. |+.+-+
T Consensus 88 L~~~~~~~~~~~~~~~~~----------------------------~~~~-l~~~~~~N~G~EGla~D~~~~~-L~v~kE 137 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADV----------------------------QKIS-LGFPNKGNKGFEGLAYDPKTNR-LFVAKE 137 (248)
T ss_dssp EEEEEE----TT--EEEE----------------------------EEEE----S---SS--EEEEEETTTTE-EEEEEE
T ss_pred EEEEEEeccccccchhhc----------------------------eEEe-cccccCCCcceEEEEEcCCCCE-EEEEeC
Confidence 999998543211100000 0000 0011235667999999998844 555666
Q ss_pred CCeEEEEeCCC--CCCCc-eee------eccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC
Q 011709 300 DSCLILWDARV--GTSPV-IKV------EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (479)
Q Consensus 300 dg~i~iwd~~~--~~~~~-~~~------~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 370 (479)
..-..+|.++. ..... ... .......+.+++++|..+.+++....+..|.++|.. ++++..+.-
T Consensus 138 ~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-------G~~~~~~~L 210 (248)
T PF06977_consen 138 RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-------GRVVSSLSL 210 (248)
T ss_dssp SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---------EEEEEE-
T ss_pred CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-------CCEEEEEEe
Confidence 66667776654 21111 111 112345688999999888899998889999999954 566655532
Q ss_pred CC---------CcEEEEEEecCCCcEEEEEeCCCCEEE
Q 011709 371 HS---------AAVLCVQWSPDKSSVFGSSAEDGLLNI 399 (479)
Q Consensus 371 h~---------~~v~~l~~~p~~~~llas~s~Dg~v~i 399 (479)
.. ...-.|+|.++|. |+ ..+.-....+
T Consensus 211 ~~g~~gl~~~~~QpEGIa~d~~G~-LY-IvsEpNlfy~ 246 (248)
T PF06977_consen 211 DRGFHGLSKDIPQPEGIAFDPDGN-LY-IVSEPNLFYR 246 (248)
T ss_dssp STTGGG-SS---SEEEEEE-TT---EE-EEETTTEEEE
T ss_pred CCcccCcccccCCccEEEECCCCC-EE-EEcCCceEEE
Confidence 22 2467899999987 55 3444444433
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00025 Score=70.81 Aligned_cols=189 Identities=13% Similarity=0.131 Sum_probs=116.6
Q ss_pred eeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCce
Q 011709 202 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV 281 (479)
Q Consensus 202 l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 281 (479)
-+|++.+..++.|+.+|.|.+.+-.- ..++.++.+...+
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~-----------------------------------------~~~~~fqa~~~si 67 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSF-----------------------------------------QLIRGFQAYEQSI 67 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccc-----------------------------------------eeeehheecchhh
Confidence 45778888999999999988876421 1113344455553
Q ss_pred EEEEEeeCCCcEEEEEecCC-----eEEEEeCCCCC--C-C-ce--eeecc-----CCCCeEEEEecCCCCcEEEEEeCC
Q 011709 282 EDVTFCPSSAQEFCSVGDDS-----CLILWDARVGT--S-P-VI--KVEKA-----HDADLHCVDWNPLDDNLILTGSAD 345 (479)
Q Consensus 282 ~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~--~-~-~~--~~~~~-----~~~~v~~l~~sp~~~~~l~tgs~d 345 (479)
-..-+.-++..+|++.++|+ .|++||+.... . | ++ ..... .+.++.+++.+. +-..+|.|-.+
T Consensus 68 v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~n 146 (933)
T KOG2114|consen 68 VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTN 146 (933)
T ss_pred hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecC
Confidence 33334444446888877765 48999997542 1 2 23 12222 356788999998 88999999999
Q ss_pred CcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEE
Q 011709 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (479)
Q Consensus 346 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 425 (479)
|.|..+.=.-.... +....-...-.++|+++++..++..++..+ .-..|.+|.+... +|. .-.
T Consensus 147 G~V~~~~GDi~RDr--gsr~~~~~~~~~pITgL~~~~d~~s~lFv~-Tt~~V~~y~l~gr-------------~p~-~~~ 209 (933)
T KOG2114|consen 147 GLVICYKGDILRDR--GSRQDYSHRGKEPITGLALRSDGKSVLFVA-TTEQVMLYSLSGR-------------TPS-LKV 209 (933)
T ss_pred cEEEEEcCcchhcc--ccceeeeccCCCCceeeEEecCCceeEEEE-ecceeEEEEecCC-------------Ccc-eee
Confidence 99999854322111 111222223457999999999988633233 3457999999852 122 223
Q ss_pred eCCCCC-ceeEEEecCCC-eeeecCC
Q 011709 426 HAGHSP-SSSIKFVLRES-CLVDNNH 449 (479)
Q Consensus 426 ~~gh~~-~~~~~~sp~~~-~l~~~~~ 449 (479)
+..|.. ..+..+++... ++++++.
T Consensus 210 ld~~G~~lnCss~~~~t~qfIca~~e 235 (933)
T KOG2114|consen 210 LDNNGISLNCSSFSDGTYQFICAGSE 235 (933)
T ss_pred eccCCccceeeecCCCCccEEEecCc
Confidence 443433 56777776555 5555555
No 322
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.16 E-value=0.0011 Score=59.47 Aligned_cols=216 Identities=12% Similarity=0.058 Sum_probs=119.6
Q ss_pred CCcEEEEECCCCCCccccCCCCCCCCcEEEeccC-CCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccc
Q 011709 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 240 (479)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~-~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 240 (479)
+|+|..||..++. .+....--. .....+. ..++++.+++++.++.|..||..++........
T Consensus 2 ~g~l~~~d~~tG~------------~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~---- 64 (238)
T PF13360_consen 2 DGTLSALDPRTGK------------ELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL---- 64 (238)
T ss_dssp TSEEEEEETTTTE------------EEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC----
T ss_pred CCEEEEEECCCCC------------EEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec----
Confidence 6788888888772 233332211 1111111 333566788888899999999977654221110
Q ss_pred cCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceee-e
Q 011709 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-E 319 (479)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~ 319 (479)
...+.......++ .++.++.++.|..+|..+++ .... .
T Consensus 65 -------------------------------------~~~~~~~~~~~~~--~v~v~~~~~~l~~~d~~tG~--~~W~~~ 103 (238)
T PF13360_consen 65 -------------------------------------PGPISGAPVVDGG--RVYVGTSDGSLYALDAKTGK--VLWSIY 103 (238)
T ss_dssp -------------------------------------SSCGGSGEEEETT--EEEEEETTSEEEEEETTTSC--EEEEEE
T ss_pred -------------------------------------cccccceeeeccc--ccccccceeeeEecccCCcc--eeeeec
Confidence 0110000122233 45666688899999999998 4444 2
Q ss_pred ccCC---CCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCc----------EEEEEEecCCCc
Q 011709 320 KAHD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA----------VLCVQWSPDKSS 386 (479)
Q Consensus 320 ~~~~---~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~~p~~~~ 386 (479)
.... .......... .+..++++..++.|..+|+++ ++.+......... +..-....++ .
T Consensus 104 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 175 (238)
T PF13360_consen 104 LTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKT------GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-R 175 (238)
T ss_dssp E-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTT------TEEEEEEESSTT-SS--EEEETTEEEEEECCTT-E
T ss_pred cccccccccccccCceE-ecCEEEEEeccCcEEEEecCC------CcEEEEeecCCCCCCcceeeecccccceEEECC-E
Confidence 2211 1112222222 467888888899999999998 7777776554322 1122222234 4
Q ss_pred EEEEEeCCCC-EEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 387 VFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 387 llas~s~Dg~-v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
++ .++.++. +.+ |+.++ +.++... ...... ....++..|+.++. ++.+..|+...
T Consensus 176 v~-~~~~~g~~~~~-d~~tg---------------~~~w~~~-~~~~~~-~~~~~~~~l~~~~~-----~~~l~~~d~~t 231 (238)
T PF13360_consen 176 VY-VSSGDGRVVAV-DLATG---------------EKLWSKP-ISGIYS-LPSVDGGTLYVTSS-----DGRLYALDLKT 231 (238)
T ss_dssp EE-EECCTSSEEEE-ETTTT---------------EEEEEEC-SS-ECE-CEECCCTEEEEEET-----TTEEEEEETTT
T ss_pred EE-EEcCCCeEEEE-ECCCC---------------CEEEEec-CCCccC-CceeeCCEEEEEeC-----CCEEEEEECCC
Confidence 55 5555665 555 99885 2223222 111111 13466677777766 78999988765
Q ss_pred cc
Q 011709 466 AL 467 (479)
Q Consensus 466 ~~ 467 (479)
.-
T Consensus 232 G~ 233 (238)
T PF13360_consen 232 GK 233 (238)
T ss_dssp TE
T ss_pred CC
Confidence 43
No 323
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.08 E-value=0.00018 Score=70.87 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=117.5
Q ss_pred eeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 011709 200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 279 (479)
Q Consensus 200 ~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (479)
.+++|+|.| .++-|+ ...|.+-|..+.+ .++.+.-|..
T Consensus 19 ~A~Dw~~~G-LiAygs-hslV~VVDs~s~q----------------------------------------~iqsie~h~s 56 (1062)
T KOG1912|consen 19 NAADWSPSG-LIAYGS-HSLVSVVDSRSLQ----------------------------------------LIQSIELHQS 56 (1062)
T ss_pred cccccCccc-eEEEec-CceEEEEehhhhh----------------------------------------hhhccccCcc
Confidence 588999887 455555 4678888875432 3356667889
Q ss_pred ceEEEEEeeC-----------CCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCC--CC-cEEEEEeCC
Q 011709 280 TVEDVTFCPS-----------SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DD-NLILTGSAD 345 (479)
Q Consensus 280 ~v~~l~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~-~~l~tgs~d 345 (479)
.|+.+.|.|- ..-+++++...|.|.+||..... .+..+..|..++..++|-|. +. .+|++-..-
T Consensus 57 ~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s--~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~s 134 (1062)
T KOG1912|consen 57 AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS--VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGS 134 (1062)
T ss_pred ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh--hhhhhcCCCcchhheeeeeccCcchheeEEecCC
Confidence 9999999863 12357788888999999999987 56667788899999999662 23 577777778
Q ss_pred CcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 346 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.+|.+|+..+ |+.+.....-.....|+.+.|-...-|..-+..|.|.+-+...
T Consensus 135 s~lvLwntdt------G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 135 STLVLWNTDT------GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred cEEEEEEccC------CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence 8999999998 7888888777778888999997655555666678887777654
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=0.00038 Score=69.37 Aligned_cols=108 Identities=14% Similarity=0.190 Sum_probs=77.8
Q ss_pred EEEecCCCCcEEEEEeC----CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 145 RIRELPQNTKIVATHTD----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
-..|+| ...++|.++. .|.|-||--...+ ....+...| +++++|+|..-.|++|-.-|.+
T Consensus 20 i~SWHP-sePlfAVA~fS~er~GSVtIfadtGEP-----------qr~Vt~P~h----atSLCWHpe~~vLa~gwe~g~~ 83 (1416)
T KOG3617|consen 20 ISSWHP-SEPLFAVASFSPERGGSVTIFADTGEP-----------QRDVTYPVH----ATSLCWHPEEFVLAQGWEMGVS 83 (1416)
T ss_pred ccccCC-CCceeEEEEecCCCCceEEEEecCCCC-----------Cccccccee----hhhhccChHHHHHhhcccccee
Confidence 347888 4457777764 4678887432221 111222222 4579999998889999999999
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecC
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (479)
.+|..++.... .....|+.+|..+.|+++| ..++++..-
T Consensus 84 ~v~~~~~~e~h----------------------------------------tv~~th~a~i~~l~wS~~G-~~l~t~d~~ 122 (1416)
T KOG3617|consen 84 DVQKTNTTETH----------------------------------------TVVETHPAPIQGLDWSHDG-TVLMTLDNP 122 (1416)
T ss_pred EEEecCCceee----------------------------------------eeccCCCCCceeEEecCCC-CeEEEcCCC
Confidence 99988754332 2334589999999999999 789999999
Q ss_pred CeEEEEeCC
Q 011709 301 SCLILWDAR 309 (479)
Q Consensus 301 g~i~iwd~~ 309 (479)
|.|.+|...
T Consensus 123 g~v~lwr~d 131 (1416)
T KOG3617|consen 123 GSVHLWRYD 131 (1416)
T ss_pred ceeEEEEee
Confidence 999999765
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00042 Score=67.77 Aligned_cols=162 Identities=10% Similarity=0.122 Sum_probs=103.4
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEE
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~ 221 (479)
.|.--++.. ...+|+.|+.-|.+++|+-..+..+.. ...+-+ ..+..+..+++..++|.|+..|.|.
T Consensus 35 ~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~-----------~~~~~~-~~~~~~~vs~~e~lvAagt~~g~V~ 101 (726)
T KOG3621|consen 35 RVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKL-----------KNEGAT-GITCVRSVSSVEYLVAAGTASGRVS 101 (726)
T ss_pred eEEEEEeec-CCceEEEecccceEEEEecCchhhhcc-----------cccCcc-ceEEEEEecchhHhhhhhcCCceEE
Confidence 333333344 778999999999999999887743321 111222 2466778888888999999999999
Q ss_pred EEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC
Q 011709 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (479)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (479)
++.++.......... . .--+.|...|++++|++++ ..+++|...|
T Consensus 102 v~ql~~~~p~~~~~~-------------t---------------------~~d~~~~~rVTal~Ws~~~-~k~ysGD~~G 146 (726)
T KOG3621|consen 102 VFQLNKELPRDLDYV-------------T---------------------PCDKSHKCRVTALEWSKNG-MKLYSGDSQG 146 (726)
T ss_pred eehhhccCCCcceee-------------c---------------------cccccCCceEEEEEecccc-cEEeecCCCc
Confidence 998875321100000 0 0112278899999999999 7899999999
Q ss_pred eEEEEeCCCCCC--CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 302 CLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 302 ~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
.|.+-.+..... .....+..-.+.|..+++.. +.+|++... . -.+++...
T Consensus 147 kv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~-r-~~Lc~tE~ 198 (726)
T KOG3621|consen 147 KVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLT-R-CILCQTEA 198 (726)
T ss_pred eEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhh-h-hheeecch
Confidence 999888776210 01222224567788888763 444444333 2 23455543
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.90 E-value=0.0053 Score=64.12 Aligned_cols=200 Identities=10% Similarity=0.197 Sum_probs=121.2
Q ss_pred ceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC
Q 011709 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (479)
.|.++.|..+...++.+..+|.|.+-|..+.... ....-
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-----------------------------------------ivg~v 108 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELE-----------------------------------------IVGNV 108 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEccccccee-----------------------------------------eeeec
Confidence 5789999999888888899999999987654321 11123
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCC----CCCCCc----------e--------eeecc--------------
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR----VGTSPV----------I--------KVEKA-------------- 321 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~----~~~~~~----------~--------~~~~~-------------- 321 (479)
...|.+++|+|++ .+++..+.++++.+-+-. ..+ ++ + ..+.+
T Consensus 109 d~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e 186 (1265)
T KOG1920|consen 109 DNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAEK-PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE 186 (1265)
T ss_pred cCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhcc-ccccccccccccceecccccceeeecchhhhccccccccc
Confidence 4579999999999 577777777777654321 000 00 0 01110
Q ss_pred -------CCCCeEEEEecCCCCcEEEE-----EeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEE
Q 011709 322 -------HDADLHCVDWNPLDDNLILT-----GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFG 389 (479)
Q Consensus 322 -------~~~~v~~l~~sp~~~~~l~t-----gs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~lla 389 (479)
-...=++|+|-- ||.++|+ ....+.|+|||... ..-..-..-.+.=.+++|-|.|. ++|
T Consensus 187 k~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drEg-------~Lns~se~~~~l~~~LsWkPsgs-~iA 257 (1265)
T KOG1920|consen 187 KALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDREG-------ALNSTSEPVEGLQHSLSWKPSGS-LIA 257 (1265)
T ss_pred ccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEecccc-------hhhcccCcccccccceeecCCCC-eEe
Confidence 011224589988 8999998 33348999999872 11111111222335799999888 566
Q ss_pred EEe---CCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC-CceeEEEecCCCeeee---cCCCccccceeEEEEe
Q 011709 390 SSA---EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS-PSSSIKFVLRESCLVD---NNHGLSYANKKIKIYC 462 (479)
Q Consensus 390 s~s---~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~-~~~~~~~sp~~~~l~~---~~~~~~~~d~~i~i~~ 462 (479)
+.. .|+.|.++.-+.. .-. +......-.. .+..++|+.++..|+. ... ...|++|-
T Consensus 258 ~iq~~~sd~~IvffErNGL--~hg----------~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e-----~~~v~lwt 320 (1265)
T KOG1920|consen 258 AIQCKTSDSDIVFFERNGL--RHG----------EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLE-----NSLVQLWT 320 (1265)
T ss_pred eeeecCCCCcEEEEecCCc--ccc----------ccccCCcccccchheeeecCCCCceeeeecccc-----cceEEEEE
Confidence 653 3667888874431 110 0000011111 2789999999998887 333 34488996
Q ss_pred eccc
Q 011709 463 HLEA 466 (479)
Q Consensus 463 ~~~~ 466 (479)
..++
T Consensus 321 ~~Ny 324 (1265)
T KOG1920|consen 321 TGNY 324 (1265)
T ss_pred ecCe
Confidence 5544
No 327
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.85 E-value=0.0026 Score=56.91 Aligned_cols=187 Identities=11% Similarity=0.036 Sum_probs=105.6
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccc
Q 011709 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (479)
Q Consensus 152 ~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~ 231 (479)
++..+++++.++.|+.||..++ +......... . +.... ...+..++.++.++.|..+|..++...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG------------~~~W~~~~~~-~-~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTG------------KVLWRFDLPG-P-ISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVL 99 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTS------------EEEEEEECSS-C-GGSGE-EEETTEEEEEETTSEEEEEETTTSCEE
T ss_pred eCCEEEEEcCCCEEEEEECCCC------------CEEEEeeccc-c-cccee-eecccccccccceeeeEecccCCccee
Confidence 3345666689999999999888 3333443311 1 11111 223556676777889999998776553
Q ss_pred cccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCC
Q 011709 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 311 (479)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 311 (479)
..... ....... ..........+ ..++.+..++.|..+|.+++
T Consensus 100 W~~~~-----------------------------------~~~~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG 142 (238)
T PF13360_consen 100 WSIYL-----------------------------------TSSPPAG-VRSSSSPAVDG-DRLYVGTSSGKLVALDPKTG 142 (238)
T ss_dssp EEEEE------------------------------------SSCTCS-TB--SEEEEET-TEEEEEETCSEEEEEETTTT
T ss_pred eeecc-----------------------------------ccccccc-cccccCceEec-CEEEEEeccCcEEEEecCCC
Confidence 22100 0000000 11122222224 46777777999999999999
Q ss_pred CCCceeeeccCCCC-----------eEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEE
Q 011709 312 TSPVIKVEKAHDAD-----------LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 380 (479)
Q Consensus 312 ~~~~~~~~~~~~~~-----------v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 380 (479)
+ .+......... ...+.+. ++ .++.++.++.+..+|+.+ ++.+.... ...+..+ .
T Consensus 143 ~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~t------g~~~w~~~--~~~~~~~-~ 208 (238)
T PF13360_consen 143 K--LLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLAT------GEKLWSKP--ISGIYSL-P 208 (238)
T ss_dssp E--EEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEEETTT------TEEEEEEC--SS-ECEC-E
T ss_pred c--EEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEEECCC------CCEEEEec--CCCccCC-c
Confidence 8 44443332211 1334443 34 777777788644349988 55444333 2233332 3
Q ss_pred ecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 381 SPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 381 ~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
...+..++ .++.++.|..||++++
T Consensus 209 ~~~~~~l~-~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 209 SVDGGTLY-VTSSDGRLYALDLKTG 232 (238)
T ss_dssp ECCCTEEE-EEETTTEEEEEETTTT
T ss_pred eeeCCEEE-EEeCCCEEEEEECCCC
Confidence 45666554 5558999999999984
No 328
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.0019 Score=62.47 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=94.0
Q ss_pred ceeeeeecCCCCcEEEe---cCC-CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCcee
Q 011709 198 AEFALAMCPTEPYVLSG---GKD-KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI 273 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~---s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (479)
.+..-+|+|++..++-- ... ..+.++|++++..... ..
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--------------------------------------~~ 235 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--------------------------------------LN 235 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--------------------------------------ec
Confidence 46677899998865433 222 4688899876543211 12
Q ss_pred ecCCCCceEEEEEeeCCCcEEEEEecCCe--EEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC-CCc--E
Q 011709 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNS--V 348 (479)
Q Consensus 274 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg~--I 348 (479)
+.++ -..-+|+|+|..++++...||. |.++|+..+.. .+ +....+.-..=.|+| +|.+|+-.++ .|. |
T Consensus 236 ~~g~---~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~--~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I 308 (425)
T COG0823 236 FNGN---NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL--PR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQI 308 (425)
T ss_pred cCCc---cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc--ee-cccCCccccCccCCC-CCCEEEEEeCCCCCcce
Confidence 2223 3355899999888888888886 55567776662 22 333333333678999 7777666555 454 5
Q ss_pred EEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCC--EEEEeCCCC
Q 011709 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKV 405 (479)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~--v~iwd~~~~ 405 (479)
.++|+.. .....+......-..-.|+|+|.+++.....+|. |.+.|+..+
T Consensus 309 ~~~~~~g-------~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 309 YLYDLEG-------SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred EEECCCC-------CceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 5556554 3334443333333377899999986555544555 666666654
No 329
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.74 E-value=0.0011 Score=63.31 Aligned_cols=240 Identities=15% Similarity=0.146 Sum_probs=119.3
Q ss_pred ceeeeeecCCCCcEEEecCCCcEEEEecCCCcccc-ccCCcccc-------cCCCCCceeecCCCCCCCCCCCCCCCCCC
Q 011709 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS-ATDPATAK-------SAGSSGSIIKQSPKPGDGNDKAADGPSVG 269 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (479)
.|+.+.|.++..-|+.|...|.|.||......... ...+.... .......+.-...... ..+ .....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~-~~~----~~gf~ 77 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAP-PSL----KEGFL 77 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG---TT-----SEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCC-ccc----ccccC
Confidence 37899999998899999999999999876543321 00000000 0000000100000000 000 01234
Q ss_pred CceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeee--cc------CCCCeEEEEecC----CC--
Q 011709 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE--KA------HDADLHCVDWNP----LD-- 335 (479)
Q Consensus 270 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~------~~~~v~~l~~sp----~~-- 335 (479)
|...+....+.|++++.+.-| +++.|.++|.+.|.|+|... ++... .. ....++++.|+- .+
T Consensus 78 P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPa--vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPA--VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTE--EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred chhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCe--EEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 556666678999999998777 89999999999999998876 44331 11 234677888862 12
Q ss_pred -CcEEEEEeCCCcEEEEecCCCCCCC-CCCceeeecCCCCcEEEEE-EecC--------------------CCcEEEEEe
Q 011709 336 -DNLILTGSADNSVRMFDRRNLTSNG-VGSPINKFEGHSAAVLCVQ-WSPD--------------------KSSVFGSSA 392 (479)
Q Consensus 336 -~~~l~tgs~dg~I~iwd~~~~~~~~-~~~~~~~~~~h~~~v~~l~-~~p~--------------------~~~llas~s 392 (479)
.-++++|...|.+.+|.+--..... ..........+.++|..+. |+.+ -+.+++.++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 3589999999999999885211100 0011122224556666655 3221 012333343
Q ss_pred CCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEE-----ecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 393 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKF-----VLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 393 ~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~-----sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
+..++|+.+.+...... .| ..+.....+.+ ...+.+|++-.. +|.|++|.....
T Consensus 234 -e~~irv~~~~~~k~~~K------------~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~-----~G~i~i~SLP~L 292 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHK------------SF--DDPFLCSSASVVPTISRNGGYCLVCLFN-----NGSIRIYSLPSL 292 (395)
T ss_dssp -SSEEEEE-TT---EEEE------------E---SS-EEEEEEEEEEEE-EEEEEEEEEEET-----TSEEEEEETTT-
T ss_pred -ccceEEEeCCCCcccce------------ee--ccccccceEEEEeecccCCceEEEEEEC-----CCcEEEEECCCc
Confidence 66799998876321111 11 11111234444 235667777666 899999976653
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00027 Score=69.10 Aligned_cols=114 Identities=15% Similarity=0.225 Sum_probs=82.9
Q ss_pred CCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCc-eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeC
Q 011709 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP-INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 402 (479)
Q Consensus 324 ~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~ 402 (479)
..|.--+++- .+.+++.|++-|.+++|+... +.. .....+-.+.+..+..+++.. ++|.|+..|.|.++-+
T Consensus 34 ~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~------~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 34 ARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHT------GEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQL 105 (726)
T ss_pred ceEEEEEeec-CCceEEEecccceEEEEecCc------hhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehh
Confidence 3343344444 679999999999999999775 222 222233445555666777665 6889999999999998
Q ss_pred CCCCccccCCCCCCCCCCeeEEEeCCCC--C--ceeEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 403 EKVGKKVEQGPRTTNYPAGLFFQHAGHS--P--SSSIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~~~~gh~--~--~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
... .|+.+.+...+|. . |++++|++++..+++|.. .|+|.+-.
T Consensus 106 ~~~------------~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~-----~Gkv~~~~ 152 (726)
T KOG3621|consen 106 NKE------------LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS-----QGKVVLTE 152 (726)
T ss_pred hcc------------CCCcceeeccccccCCceEEEEEecccccEEeecCC-----CceEEEEE
Confidence 874 5566666666665 2 999999999999999998 78876553
No 331
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.67 E-value=0.0011 Score=67.93 Aligned_cols=136 Identities=15% Similarity=0.217 Sum_probs=93.7
Q ss_pred CCCCCCCCCCCCCCceeecCCCCc-eEEEEEee-----CCCcEEEEEecCCeEEEEeCCCCCCCceeee---ccCCCCeE
Q 011709 257 DGNDKAADGPSVGPRGIYNGHEDT-VEDVTFCP-----SSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLH 327 (479)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~ 327 (479)
...+...|...++.+..+..|... |.+++=.. .. .-.+.|-.+..|..||.|....+++... ........
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~-e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTN-EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCC-CceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 344555667777777777766543 54443221 12 2345666778899999997543333211 13456688
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCC
Q 011709 328 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 328 ~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~ 403 (479)
|++-+. ..+||.|+.+|.||+||--. .+.-..+.+-..+|..|..+.||+++|||+ +..+.|++..
T Consensus 582 ~~aTt~--~G~iavgs~~G~IRLyd~~g------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 582 CFATTE--DGYIAVGSNKGDIRLYDRLG------KRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred EEEecC--CceEEEEeCCCcEEeecccc------hhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 888774 56899999999999999432 234445667789999999999999988777 6689999974
No 332
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.65 E-value=0.011 Score=57.46 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=60.1
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
.++.++.+|.+..+|..+++ .+.... . .....+.. .+..|+.++.+|.+..+|..+ ++.+.....-.
T Consensus 258 ~vy~~~~~g~l~ald~~tG~--~~W~~~-~-~~~~~~~~---~~~~vy~~~~~g~l~ald~~t------G~~~W~~~~~~ 324 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQ--IVWKRE-Y-GSVNDFAV---DGGRIYLVDQNDRVYALDTRG------GVELWSQSDLL 324 (394)
T ss_pred EEEEEEcCCeEEEEECCCCC--EEEeec-C-CCccCcEE---ECCEEEEEcCCCeEEEEECCC------CcEEEcccccC
Confidence 46667789999999999987 332221 1 11122222 456778888999999999987 55544332111
Q ss_pred -CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 373 -AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 373 -~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
....+.... +.+ +..++.||.|.+.|..++
T Consensus 325 ~~~~~sp~v~--~g~-l~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 325 HRLLTAPVLY--NGY-LVVGDSEGYLHWINREDG 355 (394)
T ss_pred CCcccCCEEE--CCE-EEEEeCCCEEEEEECCCC
Confidence 112222222 333 457888999999998884
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00059 Score=68.09 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=59.5
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEE
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~ 221 (479)
.+++++|+| ..-+||.|-.-|.+.+|...+. ........|.. +|..+.||++|..|+++..-|.|.
T Consensus 61 hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~------------e~htv~~th~a-~i~~l~wS~~G~~l~t~d~~g~v~ 126 (1416)
T KOG3617|consen 61 HATSLCWHP-EEFVLAQGWEMGVSDVQKTNTT------------ETHTVVETHPA-PIQGLDWSHDGTVLMTLDNPGSVH 126 (1416)
T ss_pred ehhhhccCh-HHHHHhhccccceeEEEecCCc------------eeeeeccCCCC-CceeEEecCCCCeEEEcCCCceeE
Confidence 467799999 7789999999999999998775 22233455665 689999999999999999999999
Q ss_pred EEecC
Q 011709 222 LWSIQ 226 (479)
Q Consensus 222 vwd~~ 226 (479)
+|...
T Consensus 127 lwr~d 131 (1416)
T KOG3617|consen 127 LWRYD 131 (1416)
T ss_pred EEEee
Confidence 99876
No 334
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.63 E-value=0.0039 Score=64.03 Aligned_cols=139 Identities=12% Similarity=0.117 Sum_probs=91.1
Q ss_pred CCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC-------CCcEEEecCCCcEEEEecCCCccccc
Q 011709 161 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-------EPYVLSGGKDKSVVLWSIQDHITSSA 233 (479)
Q Consensus 161 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~-------~~~l~s~s~dg~i~vwd~~~~~~~~~ 233 (479)
....|+-.|++.+ +.+..+..|....| ..+.|+ ...-+.|-.+..+..||.+-......
T Consensus 502 ~~~~ly~mDLe~G------------KVV~eW~~~~~~~v--~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 502 NPNKLYKMDLERG------------KVVEEWKVHDDIPV--VDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred CCCceEEEecCCC------------cEEEEeecCCCcce--eEecccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence 3456777788777 66777777775433 344443 23456677788899999873211000
Q ss_pred cCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCC
Q 011709 234 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS 313 (479)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 313 (479)
.. ..+.+ .......|++-..+| ++|.|+.+|.||+||- .+..
T Consensus 568 ~~----------------------------------~~k~Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~ 609 (794)
T PF08553_consen 568 DS----------------------------------QSKQY-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKR 609 (794)
T ss_pred ec----------------------------------ccccc-ccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchh
Confidence 00 00111 234457788777777 6999999999999994 3332
Q ss_pred CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecC
Q 011709 314 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (479)
Q Consensus 314 ~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~ 354 (479)
....+.+-..+|..|+.+. +|++|++.+ +..+.|+|..
T Consensus 610 -AKT~lp~lG~pI~~iDvt~-DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 610 -AKTALPGLGDPIIGIDVTA-DGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred -hhhcCCCCCCCeeEEEecC-CCcEEEEee-cceEEEEEEe
Confidence 4445557789999999999 898877665 5677888764
No 335
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.59 E-value=0.0043 Score=46.75 Aligned_cols=102 Identities=17% Similarity=0.261 Sum_probs=67.8
Q ss_pred eEEEEecCCC---CcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeC
Q 011709 326 LHCVDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 402 (479)
Q Consensus 326 v~~l~~sp~~---~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~ 402 (479)
|+++++...+ .+.|++||.|..||+|+-. ..+.++.. .+.|++++-...+ .|+.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--------e~~~Ei~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--------EIVAEITE-TDKVTSLCSLGGG--RFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--------cEEEEEec-ccceEEEEEcCCC--EEEEEecCCEEEEEeC
Confidence 5666665533 3799999999999999864 46677664 4567777766664 3788999999999985
Q ss_pred CCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecC---C-CeeeecCCCccccceeEEE
Q 011709 403 EKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLR---E-SCLVDNNHGLSYANKKIKI 460 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~---~-~~l~~~~~~~~~~d~~i~i 460 (479)
.. .++.......++++++..- | ..|++|=. +|.|.+
T Consensus 71 ~~-----------------RlWRiKSK~~~~~~~~~D~~gdG~~eLI~Gws-----nGkve~ 110 (111)
T PF14783_consen 71 SQ-----------------RLWRIKSKNQVTSMAFYDINGDGVPELIVGWS-----NGKVEV 110 (111)
T ss_pred cc-----------------eeeeeccCCCeEEEEEEcCCCCCceEEEEEec-----CCeEEe
Confidence 43 2333333344566666542 2 24555555 777754
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.56 E-value=0.0026 Score=61.74 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=95.0
Q ss_pred ceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC
Q 011709 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (479)
....+.++|+|++++.++ ||...++..... +. ..
T Consensus 34 ~p~~ls~npngr~v~V~g-~geY~iyt~~~~-------------------------------------------r~--k~ 67 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCG-DGEYEIYTALAW-------------------------------------------RN--KA 67 (443)
T ss_dssp --SEEEE-TTSSEEEEEE-TTEEEEEETTTT-------------------------------------------EE--EE
T ss_pred CCeeEEECCCCCEEEEEc-CCEEEEEEccCC-------------------------------------------cc--cc
Confidence 357999999999988866 777777763210 00 11
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~ 357 (479)
.+.-.+++|.+.+ .+|+-...+.|.++.--... ....+. .+..+..+-. |.+|+..+.+ .|.+||+.+
T Consensus 68 ~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~--~~k~i~-~~~~~~~If~----G~LL~~~~~~-~i~~yDw~~-- 135 (443)
T PF04053_consen 68 FGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNE--VVKSIK-LPFSVEKIFG----GNLLGVKSSD-FICFYDWET-- 135 (443)
T ss_dssp EEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE---TT------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--
T ss_pred cCceeEEEEecCc--cEEEEECCCeEEEEEcCccc--cceEEc-CCcccceEEc----CcEEEEECCC-CEEEEEhhH--
Confidence 2345678898855 47777778899996322222 111221 1223444432 6677766654 899999998
Q ss_pred CCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEE
Q 011709 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKF 437 (479)
Q Consensus 358 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~ 437 (479)
++.+.++... +|..+.|++++.+ +|-.+ +..+.|++.....-.. ..+.+....+...+.-...|.+.+|
T Consensus 136 ----~~~i~~i~v~--~vk~V~Ws~~g~~-val~t-~~~i~il~~~~~~~~~---~~~~g~e~~f~~~~E~~~~IkSg~W 204 (443)
T PF04053_consen 136 ----GKLIRRIDVS--AVKYVIWSDDGEL-VALVT-KDSIYILKYNLEAVAA---IPEEGVEDAFELIHEISERIKSGCW 204 (443)
T ss_dssp ------EEEEESS---E-EEEEE-TTSSE-EEEE--S-SEEEEEE-HHHHHH---BTTTB-GGGEEEEEEE-S--SEEEE
T ss_pred ----cceeeEEecC--CCcEEEEECCCCE-EEEEe-CCeEEEEEecchhccc---ccccCchhceEEEEEecceeEEEEE
Confidence 7888888743 4899999999995 55555 4478888765420001 1111111233444444567889999
Q ss_pred ecCCCeeeecCC
Q 011709 438 VLRESCLVDNNH 449 (479)
Q Consensus 438 sp~~~~l~~~~~ 449 (479)
.-+ -++.++..
T Consensus 205 ~~d-~fiYtT~~ 215 (443)
T PF04053_consen 205 VED-CFIYTTSN 215 (443)
T ss_dssp ETT-EEEEE-TT
T ss_pred EcC-EEEEEcCC
Confidence 877 44544444
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.54 E-value=0.042 Score=53.51 Aligned_cols=225 Identities=13% Similarity=0.181 Sum_probs=109.7
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
...-....+.++| +++.++.+ .||.-.|+..... + ....| ......|.+.++ +|+-...
T Consensus 30 ~~~~~p~~ls~np-ngr~v~V~-g~geY~iyt~~~~------------r--~k~~G----~g~~~vw~~~n~-yAv~~~~ 88 (443)
T PF04053_consen 30 SCEIYPQSLSHNP-NGRFVLVC-GDGEYEIYTALAW------------R--NKAFG----SGLSFVWSSRNR-YAVLESS 88 (443)
T ss_dssp E-SS--SEEEE-T-TSSEEEEE-ETTEEEEEETTTT------------E--EEEEE----E-SEEEE-TSSE-EEEE-TT
T ss_pred CCCcCCeeEEECC-CCCEEEEE-cCCEEEEEEccCC------------c--ccccC----ceeEEEEecCcc-EEEEECC
Confidence 3444578999999 77788774 4667777773322 1 11111 235788998554 6666668
Q ss_pred CcEEEE-ecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 218 KSVVLW-SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 218 g~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
++|.++ +++.... ..+.. ...+..+-. | .+|+.
T Consensus 89 ~~I~I~kn~~~~~~-----------------------------------------k~i~~-~~~~~~If~---G-~LL~~ 122 (443)
T PF04053_consen 89 STIKIYKNFKNEVV-----------------------------------------KSIKL-PFSVEKIFG---G-NLLGV 122 (443)
T ss_dssp S-EEEEETTEE-TT-----------------------------------------------SS-EEEEE----S-SSEEE
T ss_pred CeEEEEEcCccccc-----------------------------------------eEEcC-CcccceEEc---C-cEEEE
Confidence 889996 4432110 01111 112333332 5 55555
Q ss_pred EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCC-----CCCCCCCceeeecCC
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL-----TSNGVGSPINKFEGH 371 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~-----~~~~~~~~~~~~~~h 371 (479)
.+. +.|.+||+.+++ .+...... +|..+.|++ ++.+++..+.+ .+.|++.... .+.+....+..+..-
T Consensus 123 ~~~-~~i~~yDw~~~~--~i~~i~v~--~vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~ 195 (443)
T PF04053_consen 123 KSS-DFICFYDWETGK--LIRRIDVS--AVKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI 195 (443)
T ss_dssp EET-TEEEEE-TTT----EEEEESS---E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE
T ss_pred ECC-CCEEEEEhhHcc--eeeEEecC--CCcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe
Confidence 544 489999999988 67766432 389999999 89999988755 6777765541 000000133333332
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCc
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGL 451 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~ 451 (479)
...|.+..|..+ .++ -.... .++- +-.+ . ...+. +- -.+..=+.+.++...+.....
T Consensus 196 ~~~IkSg~W~~d--~fi-YtT~~-~lkY--l~~G-e------------~~~i~-~l-d~~~yllgy~~~~~~ly~~Dr-- 252 (443)
T PF04053_consen 196 SERIKSGCWVED--CFI-YTTSN-HLKY--LVNG-E------------TGIIA-HL-DKPLYLLGYLPKENRLYLIDR-- 252 (443)
T ss_dssp -S--SEEEEETT--EEE-EE-TT-EEEE--EETT-E------------EEEEE-E--SS--EEEEEETTTTEEEEE-T--
T ss_pred cceeEEEEEEcC--EEE-EEcCC-eEEE--EEcC-C------------cceEE-Ec-CCceEEEEEEccCCEEEEEEC--
Confidence 567888999876 233 33333 5555 3321 1 01111 11 133566677776667776666
Q ss_pred cccceeEEEEe
Q 011709 452 SYANKKIKIYC 462 (479)
Q Consensus 452 ~~~d~~i~i~~ 462 (479)
++.|..+.
T Consensus 253 ---~~~v~~~~ 260 (443)
T PF04053_consen 253 ---DGNVISYE 260 (443)
T ss_dssp ---T--EEEEE
T ss_pred ---CCCEEEEE
Confidence 67777663
No 338
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.53 E-value=0.0071 Score=45.61 Aligned_cols=102 Identities=11% Similarity=0.143 Sum_probs=69.0
Q ss_pred eEEEEEee---CCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 011709 281 VEDVTFCP---SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (479)
Q Consensus 281 v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~ 357 (479)
|++|++.. +|.+.|+.|++|..||+|+-.. ++... .....|++++-.. ...|+.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei-~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEI-TETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ-- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEE-ecccceEEEEEcC--CCEEEEEecCCEEEEEeCcc--
Confidence 56666654 5667899999999999997542 34443 4556788888775 47899999999999998643
Q ss_pred CCCCCCceeeecCCCCcEEEEEEec---CCCcEEEEEeCCCCEE
Q 011709 358 SNGVGSPINKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGLLN 398 (479)
Q Consensus 358 ~~~~~~~~~~~~~h~~~v~~l~~~p---~~~~llas~s~Dg~v~ 398 (479)
.+...+... .++++++.. +|..-|++|-.+|.|-
T Consensus 73 ------RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 ------RLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ------eeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 344444332 355655543 2333466888888764
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.52 E-value=0.031 Score=53.65 Aligned_cols=254 Identities=11% Similarity=0.073 Sum_probs=126.2
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCcc-c----c--------------------CC------CCCCCCcEE
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH-A----V--------------------LG------ATNSRPDLI 190 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~-~----~--------------------~~------~~~~~~~~~ 190 (479)
.|+.+.|.+ ...-||.|...|.|.||.+....... . . .. .....+...
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 588899999 55688899999999999776542221 0 0 00 001122233
Q ss_pred EeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCC
Q 011709 191 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (479)
Q Consensus 191 ~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (479)
+.... +.|++++.| +=.+++.|..+|.+.|.|++............
T Consensus 82 ~~~~~-g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-------------------------------- 127 (395)
T PF08596_consen 82 LDAKQ-GPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-------------------------------- 127 (395)
T ss_dssp E---S--SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------------------
T ss_pred eeccC-CcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc--------------------------------
Confidence 44444 468999997 44589999999999999998654332211100
Q ss_pred ceeecCCCCceEEEEEee---CC----CcEEEEEecCCeEEEEeCCC-C--CC--CceeeeccCCCCeEEEE-ecCCC--
Q 011709 271 RGIYNGHEDTVEDVTFCP---SS----AQEFCSVGDDSCLILWDARV-G--TS--PVIKVEKAHDADLHCVD-WNPLD-- 335 (479)
Q Consensus 271 ~~~~~~h~~~v~~l~~~~---~~----~~~l~s~~~dg~i~iwd~~~-~--~~--~~~~~~~~~~~~v~~l~-~sp~~-- 335 (479)
...-......|+++.|.. .+ .-.+++|.+.|.+.+|.+-- . .. ........+.+.|..+. ++...
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~ 207 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGE 207 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCC
Confidence 001112344677788763 11 13688889999999998752 1 11 11112224556665554 32210
Q ss_pred -----------------CcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEec----CCCcEEEEEeCC
Q 011709 336 -----------------DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----DKSSVFGSSAED 394 (479)
Q Consensus 336 -----------------~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p----~~~~llas~s~D 394 (479)
-.-++....+..|+++..-+ .+..+...........+.+-+ .+...|++-..+
T Consensus 208 ~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~------~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~ 281 (395)
T PF08596_consen 208 SALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK------SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNN 281 (395)
T ss_dssp B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred cccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC------CcccceeeccccccceEEEEeecccCCceEEEEEECC
Confidence 01234444578899998876 444444432222334445531 233467788899
Q ss_pred CCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC--C-CCceeEEEecCCCeeeecCC
Q 011709 395 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--H-SPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 395 g~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g--h-~~~~~~~~sp~~~~l~~~~~ 449 (479)
|.|+++.+........ ..... + .......++++|..++-.+.
T Consensus 282 G~i~i~SLP~Lkei~~-------------~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 282 GSIRIYSLPSLKEIKS-------------VSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp SEEEEEETTT--EEEE-------------EE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred CcEEEEECCCchHhhc-------------ccCCCccccccccccEECCCCCEEEEeCc
Confidence 9999999987422111 11110 0 11456777888887766655
No 340
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.069 Score=49.33 Aligned_cols=227 Identities=11% Similarity=0.058 Sum_probs=122.7
Q ss_pred EecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecC
Q 011709 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ 226 (479)
Q Consensus 147 ~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~ 226 (479)
.|.+..+.++.+--..+.|.-|+..++. ...+..... +.++..-..+..|+++. .-+.+++.+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~-------------~~~~~~p~~--~~~~~~~d~~g~Lv~~~--~g~~~~~~~ 93 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK-------------KRVFPSPGG--FSSGALIDAGGRLIACE--HGVRLLDPD 93 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc-------------eEEEECCCC--cccceeecCCCeEEEEc--cccEEEecc
Confidence 4667556567777777888888887552 112222221 34444444455566554 336666664
Q ss_pred CCcc-ccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC-CCCceEEEEEeeCCCcEEEEEec-----
Q 011709 227 DHIT-SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVGD----- 299 (479)
Q Consensus 227 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~----- 299 (479)
.+.. ...... ..+ .....+++...|+|. +.++...
T Consensus 94 ~~~~~t~~~~~-------------------------------------~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~ 135 (307)
T COG3386 94 TGGKITLLAEP-------------------------------------EDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLG 135 (307)
T ss_pred CCceeEEeccc-------------------------------------cCCCCcCCCCceeEcCCCC-EEEeCCCccccC
Confidence 3322 100000 001 123567778888884 3333222
Q ss_pred ------CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCCCCCCCCC-CceeeecCC
Q 011709 300 ------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVG-SPINKFEGH 371 (479)
Q Consensus 300 ------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~~~~~~~~-~~~~~~~~h 371 (479)
-|.|..+|. .+. .......+-..-+.|+||| ++..|+.... .+.|+-|++........+ .....+...
T Consensus 136 ~~~~~~~G~lyr~~p-~g~--~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~ 211 (307)
T COG3386 136 KSEERPTGSLYRVDP-DGG--VVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEE 211 (307)
T ss_pred ccccCCcceEEEEcC-CCC--EEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCC
Confidence 144555554 333 3455555556668999999 8866666665 488988888631100001 122333344
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCC-CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC-CCceeEEEe-cCCCeeeecC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDG-LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-SPSSSIKFV-LRESCLVDNN 448 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg-~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh-~~~~~~~~s-p~~~~l~~~~ 448 (479)
.+..-.++...+|. +.+++..+| .|.+|+.. + .++-...-. ..+++++|- |+.+.|+.++
T Consensus 212 ~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G---------------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 212 PGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-G---------------KLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCCCceEEeCCCC-EEEecccCCceEEEECCC-C---------------cEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 56677888888887 454444443 89999987 2 222222223 446777774 5555555554
Q ss_pred C
Q 011709 449 H 449 (479)
Q Consensus 449 ~ 449 (479)
.
T Consensus 275 ~ 275 (307)
T COG3386 275 A 275 (307)
T ss_pred c
Confidence 4
No 341
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.004 Score=59.26 Aligned_cols=99 Identities=18% Similarity=0.277 Sum_probs=72.1
Q ss_pred EEecCCeEEEEeCCCCCCCceeeeccC----CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 296 SVGDDSCLILWDARVGTSPVIKVEKAH----DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
.|-.|..|.-||.|-.....+....+| .....|.+-. ...+|++||.+|.||+||.-. ...-..+.+-
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~------~~AKTAlPgL 470 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIG------RRAKTALPGL 470 (644)
T ss_pred EeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCceEEEeecCCcEEeehhhh------hhhhhccccc
Confidence 455677889999996553223333333 3456666665 456999999999999999743 3444567888
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
..+|..|..+.+|.+||+|+ +..+.+-++.-
T Consensus 471 G~~I~hVdvtadGKwil~Tc--~tyLlLi~t~~ 501 (644)
T KOG2395|consen 471 GDAIKHVDVTADGKWILATC--KTYLLLIDTLI 501 (644)
T ss_pred CCceeeEEeeccCcEEEEec--ccEEEEEEEec
Confidence 89999999999999988666 67888888654
No 342
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.47 E-value=0.025 Score=53.98 Aligned_cols=274 Identities=16% Similarity=0.184 Sum_probs=136.2
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCC--------CceeeeeecCCCCcE
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--------NAEFALAMCPTEPYV 211 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~--------~~v~~l~~s~~~~~l 211 (479)
...+....|+| +++.+|-... +.|++++..++......... ....+.|-.+ ..-.++-||||+++|
T Consensus 42 ~~~~~~~~~sP-~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg----~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~l 115 (353)
T PF00930_consen 42 PPKLQDAKWSP-DGKYIAFVRD-NNLYLRDLATGQETQLTTDG----EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYL 115 (353)
T ss_dssp ETTBSEEEE-S-SSTEEEEEET-TEEEEESSTTSEEEESES------TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEE
T ss_pred ccccccceeec-CCCeeEEEec-CceEEEECCCCCeEEecccc----ceeEEcCccceeccccccccccceEECCCCCEE
Confidence 56788999999 6788887764 68999988766222111000 1111111110 113578999999988
Q ss_pred EEecC-CCcEEEEecCCCccccccCCccc----ccCCCCCceeecCCCCCCCCCCCCCCCCCCCc--e---eecCCCCce
Q 011709 212 LSGGK-DKSVVLWSIQDHITSSATDPATA----KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR--G---IYNGHEDTV 281 (479)
Q Consensus 212 ~s~s~-dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~h~~~v 281 (479)
|.... +..|..+.+..........+... ..++... ....+.+++....+.. . .+..-...+
T Consensus 116 a~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n---------p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl 186 (353)
T PF00930_consen 116 AFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN---------PRVSLFVVDLASGKTTELDPPNSLNPQDYYL 186 (353)
T ss_dssp EEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS------------EEEEEEEESSSTCCCEE---HHHHTSSEEE
T ss_pred EEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC---------CceEEEEEECCCCcEEEeeeccccCCCccCc
Confidence 86653 45555555432211100000000 0000000 0011111222222211 1 112335568
Q ss_pred EEEEEeeCCCcEEEE-EecC---CeEEEEeCCCCCCCceeeeccCCCCe---EEEEec-CCCCcEEEEEeCCCcEEEEec
Q 011709 282 EDVTFCPSSAQEFCS-VGDD---SCLILWDARVGTSPVIKVEKAHDADL---HCVDWN-PLDDNLILTGSADNSVRMFDR 353 (479)
Q Consensus 282 ~~l~~~~~~~~~l~s-~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v---~~l~~s-p~~~~~l~tgs~dg~I~iwd~ 353 (479)
..+.|.+++..+++. ...+ ..+.++|..++....+... .....| ....|. +.+..+|.....||.-+||-+
T Consensus 187 ~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 187 TRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE-TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE-ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred ccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe-cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 999999998423333 3333 3577788888764333322 233333 245544 546677777778886555554
Q ss_pred CCCCCCCCCCceeeecCCCCcEEE-EEEecCCCcEEEEEeCCC----CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC
Q 011709 354 RNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSSAEDG----LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (479)
Q Consensus 354 ~~~~~~~~~~~~~~~~~h~~~v~~-l~~~p~~~~llas~s~Dg----~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g 428 (479)
... +.....+....-.|+. +.|++++..++.++..+. .|..-++..++. ......
T Consensus 266 ~~~-----~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~---------------~~~LT~ 325 (353)
T PF00930_consen 266 DLD-----GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE---------------PKCLTC 325 (353)
T ss_dssp ETT-----SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE---------------EEESST
T ss_pred ccc-----ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC---------------eEeccC
Confidence 432 2334566655666754 788999888877887633 344444441111 111222
Q ss_pred CCCc-eeEEEecCCCeeeecCC
Q 011709 429 HSPS-SSIKFVLRESCLVDNNH 449 (479)
Q Consensus 429 h~~~-~~~~~sp~~~~l~~~~~ 449 (479)
.... .++.|||++++++....
T Consensus 326 ~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 326 EDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TSSTTEEEEE-TTSSEEEEEEE
T ss_pred CCCCceEEEECCCCCEEEEEEc
Confidence 2223 59999999999876544
No 343
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.47 E-value=0.00028 Score=41.97 Aligned_cols=39 Identities=33% Similarity=0.791 Sum_probs=33.7
Q ss_pred CCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEe
Q 011709 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 362 ~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd 401 (479)
..++..+..|...|.++.|++.+. ++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 356777788999999999999887 578999999999996
No 344
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00086 Score=64.90 Aligned_cols=79 Identities=22% Similarity=0.398 Sum_probs=68.8
Q ss_pred CCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEE-EEEEecCCCcEEEEEeCCCCEEEE
Q 011709 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL-CVQWSPDKSSVFGSSAEDGLLNIW 400 (479)
Q Consensus 322 ~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~llas~s~Dg~v~iw 400 (479)
-...+..+.|+| .-.+||++..+|.|-+..+.. +.+.++.-|...++ +++|.|||. +||.|=.||+|++-
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~-------qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNW-------QRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLH 89 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEecc-------ceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEE
Confidence 446688999999 899999999999999998873 67888887888887 999999998 78999999999999
Q ss_pred eCCCCCccc
Q 011709 401 DYEKVGKKV 409 (479)
Q Consensus 401 d~~~~~~~~ 409 (479)
|+.+++..+
T Consensus 90 Dve~~~~l~ 98 (665)
T KOG4640|consen 90 DVEKGGRLV 98 (665)
T ss_pred EccCCCcee
Confidence 999965444
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.43 E-value=0.016 Score=57.57 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=72.5
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCC----CCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCCCCCCC-
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARV----GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNG- 360 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~~~~~~- 360 (479)
.++|. +... .++.|.+.|.++ +. ..+..+ .-......++++| ++.++++++. +.+|.|+|+.+.....
T Consensus 285 vkdGK-~~~V--~gn~V~VID~~t~~~~~~-~v~~yI-PVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 285 VKAGK-FKTI--GGSKVPVVDGRKAANAGS-ALTRYV-PVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred hhCCC-EEEE--CCCEEEEEECCccccCCc-ceEEEE-ECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 34564 3333 367899999998 22 134333 4556678899999 8877666555 8999999998843200
Q ss_pred -----CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 361 -----VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 361 -----~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
....+.+..--. .....+|.++|. .+.|--.|..|..||+..
T Consensus 359 ~~~~~~~~vvaevevGl-GPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 359 GKIKPRDAVVAEPELGL-GPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCccceEEEeeccCC-CcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 001122333222 334678999987 677888899999999986
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.38 E-value=0.01 Score=58.85 Aligned_cols=113 Identities=12% Similarity=0.051 Sum_probs=64.8
Q ss_pred CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEE
Q 011709 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (479)
Q Consensus 345 dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 424 (479)
++.|.+.|.++..... ...+..+. -......+.++|||+++++++..+.+|.|.|+.+......... .....+.-
T Consensus 295 gn~V~VID~~t~~~~~-~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~---~~~~~vva 369 (635)
T PRK02888 295 GSKVPVVDGRKAANAG-SALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI---KPRDAVVA 369 (635)
T ss_pred CCEEEEEECCccccCC-cceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC---CccceEEE
Confidence 3557777766410000 12233332 3345678999999999998888899999999998533221110 01111111
Q ss_pred EeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeecccc
Q 011709 425 QHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEAL 467 (479)
Q Consensus 425 ~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~ 467 (479)
...--......+|.++|....+--- |..|..|+...-.
T Consensus 370 evevGlGPLHTaFDg~G~aytslf~-----dsqv~kwn~~~a~ 407 (635)
T PRK02888 370 EPELGLGPLHTAFDGRGNAYTTLFL-----DSQIVKWNIEAAI 407 (635)
T ss_pred eeccCCCcceEEECCCCCEEEeEee-----cceeEEEehHHHH
Confidence 1111122467788888764444333 7888889866533
No 347
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.38 E-value=0.04 Score=49.97 Aligned_cols=204 Identities=14% Similarity=0.154 Sum_probs=115.3
Q ss_pred eeeeeecCC-CCcEEEecCCC-cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC
Q 011709 199 EFALAMCPT-EPYVLSGGKDK-SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 276 (479)
Q Consensus 199 v~~l~~s~~-~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (479)
...++.+|. ...++.+-.-| ...+||..++........ ..-+.|.+
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a--------------------------------~~gRHFyG 54 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA--------------------------------PPGRHFYG 54 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC--------------------------------CCCCEEec
Confidence 356777784 44555555555 466888877654322211 01155666
Q ss_pred CCCceEEEEEeeCCCcEEEEE-----ecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC-------
Q 011709 277 HEDTVEDVTFCPSSAQEFCSV-----GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA------- 344 (479)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~------- 344 (479)
| -.|+++|. +|++. ...|.|-|||.+..- ..+..+..|.-.-..+.+.| ++..|+.+..
T Consensus 55 H------g~fs~dG~-~LytTEnd~~~g~G~IgVyd~~~~~-~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd 125 (305)
T PF07433_consen 55 H------GVFSPDGR-LLYTTENDYETGRGVIGVYDAARGY-RRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPD 125 (305)
T ss_pred C------EEEcCCCC-EEEEeccccCCCcEEEEEEECcCCc-EEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcc
Confidence 6 37999995 55554 335899999999322 14556666666667788999 7866655432
Q ss_pred CC-----------cEEEEecCCCCCCCCCCceee--e--cCCCCcEEEEEEecCCCcEEEEEeC-CCC-------EEEEe
Q 011709 345 DN-----------SVRMFDRRNLTSNGVGSPINK--F--EGHSAAVLCVQWSPDKSSVFGSSAE-DGL-------LNIWD 401 (479)
Q Consensus 345 dg-----------~I~iwd~~~~~~~~~~~~~~~--~--~~h~~~v~~l~~~p~~~~llas~s~-Dg~-------v~iwd 401 (479)
.| ++...|.++ ++.+.+ + ..|.-.|.-+++.++|. ++ .+.. .|. |-+++
T Consensus 126 ~GR~kLNl~tM~psL~~ld~~s------G~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~-~a~Q~qg~~~~~~PLva~~~ 197 (305)
T PF07433_consen 126 SGRAKLNLDTMQPSLVYLDARS------GALLEQVELPPDLHQLSIRHLAVDGDGT-VA-FAMQYQGDPGDAPPLVALHR 197 (305)
T ss_pred cCceecChhhcCCceEEEecCC------CceeeeeecCccccccceeeEEecCCCc-EE-EEEecCCCCCccCCeEEEEc
Confidence 12 233334444 555555 3 33777888999998886 33 3332 221 22222
Q ss_pred CCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 402 YEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
-... ..... .|.+. ...-+.-+-+|++++++..+++++-. .+.+-+|+..
T Consensus 198 ~g~~---~~~~~----~p~~~--~~~l~~Y~gSIa~~~~g~~ia~tsPr----Gg~~~~~d~~ 247 (305)
T PF07433_consen 198 RGGA---LRLLP----APEEQ--WRRLNGYIGSIAADRDGRLIAVTSPR----GGRVAVWDAA 247 (305)
T ss_pred CCCc---ceecc----CChHH--HHhhCCceEEEEEeCCCCEEEEECCC----CCEEEEEECC
Confidence 2110 00000 00000 00111236799999999988777765 8899999543
No 348
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.34 E-value=0.048 Score=52.99 Aligned_cols=229 Identities=14% Similarity=0.056 Sum_probs=110.4
Q ss_pred cEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCce-eeeeecCCCCcEEEecCCCcEEEEecCCCcccc
Q 011709 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAE-FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 232 (479)
Q Consensus 154 ~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v-~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~ 232 (479)
..+++++.+|.+.-+|..+++.......... ...+.......+ ..+.. .+..++.++.+|.+..+|.++++..-
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~---~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEK---DGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAW 144 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCc---ccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence 3566666777888888877743321100000 000000000000 01111 34567778889999999998876644
Q ss_pred ccCCcccccCC--CCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCce-----EEEEEeeCCCcEEEEEecCCeEEE
Q 011709 233 ATDPATAKSAG--SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV-----EDVTFCPSSAQEFCSVGDDSCLIL 305 (479)
Q Consensus 233 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~i 305 (479)
........... .....+.. ....+.+...|..+++.+.........+ .+-... .+ .++.++.+|.+..
T Consensus 145 ~~~~~~~~~ssP~v~~~~v~v--~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~--~v~~~~~~g~v~a 219 (394)
T PRK11138 145 QTKVAGEALSRPVVSDGLVLV--HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG--GAIVGGDNGRVSA 219 (394)
T ss_pred cccCCCceecCCEEECCEEEE--ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC--EEEEEcCCCEEEE
Confidence 33221111100 01111111 1223344445555555444333211000 011111 22 4666778899999
Q ss_pred EeCCCCCCCceeeec-cCC---C---CeEEEEecCC-CCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEE
Q 011709 306 WDARVGTSPVIKVEK-AHD---A---DLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (479)
Q Consensus 306 wd~~~~~~~~~~~~~-~~~---~---~v~~l~~sp~-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 377 (479)
+|..+++. +.... ... . ....+.-+|. .+..++.++.+|.+..+|..+ ++.+.+... .....
T Consensus 220 ~d~~~G~~--~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t------G~~~W~~~~--~~~~~ 289 (394)
T PRK11138 220 VLMEQGQL--IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS------GQIVWKREY--GSVND 289 (394)
T ss_pred EEccCChh--hheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC------CCEEEeecC--CCccC
Confidence 99988872 22211 000 0 0111111220 245677778899999999988 665544331 11112
Q ss_pred EEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 378 l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+.. .+..++ .++.||.+..+|..++
T Consensus 290 ~~~--~~~~vy-~~~~~g~l~ald~~tG 314 (394)
T PRK11138 290 FAV--DGGRIY-LVDQNDRVYALDTRGG 314 (394)
T ss_pred cEE--ECCEEE-EEcCCCeEEEEECCCC
Confidence 222 344344 6667899999999874
No 349
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0012 Score=63.91 Aligned_cols=94 Identities=14% Similarity=0.298 Sum_probs=75.0
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeE-EEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH-CVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~l~~sp~~~~~l~tgs~dg~I~iwd~~~~ 356 (479)
...+.-+.|+|.- .++|.+..+|.|.+..+.-.+ +.++..|...++ +++|.| +|++||.|-.||+|++-|...
T Consensus 20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n~qR---lwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~- 93 (665)
T KOG4640|consen 20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLNWQR---LWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEK- 93 (665)
T ss_pred ccceEEEEEcCcc-chhheeccCCcEEEEEeccce---eEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccC-
Confidence 4468889999988 589999999999999888333 555555777777 999999 999999999999999999998
Q ss_pred CCCCCCCceeee-cCCCCcEEEEEEec
Q 011709 357 TSNGVGSPINKF-EGHSAAVLCVQWSP 382 (479)
Q Consensus 357 ~~~~~~~~~~~~-~~h~~~v~~l~~~p 382 (479)
+..+..+ ..-...|.++-|.+
T Consensus 94 -----~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 -----GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred -----CCceeccccccccchheeeccc
Confidence 5555542 23456788888864
No 350
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.29 E-value=0.00063 Score=40.30 Aligned_cols=36 Identities=25% Similarity=0.594 Sum_probs=31.7
Q ss_pred eeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEe
Q 011709 316 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (479)
Q Consensus 316 ~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd 352 (479)
...+..|...|.+++|++ .+.++++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 455567888999999999 779999999999999996
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.021 Score=55.35 Aligned_cols=195 Identities=15% Similarity=0.152 Sum_probs=107.2
Q ss_pred ceeEEEecCCCCcEEEEE---eCC-CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE-EecC
Q 011709 142 EVNRIRELPQNTKIVATH---TDS-PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGK 216 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~---s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~-s~s~ 216 (479)
.+..-+|+| ++..++.- ... ..++++|+.++.. ..+..+.++. ..-+|+|||++|+ +...
T Consensus 194 ~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~----------~~i~~~~g~~----~~P~fspDG~~l~f~~~r 258 (425)
T COG0823 194 LILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKR----------PVILNFNGNN----GAPAFSPDGSKLAFSSSR 258 (425)
T ss_pred ceeccccCc-CCCceEEEEEecCCCceEEEEeccCCcc----------ceeeccCCcc----CCccCCCCCCEEEEEECC
Confidence 455567888 44444332 122 3599999998832 2223344443 3679999998665 5556
Q ss_pred CCcEEEE--ecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEE
Q 011709 217 DKSVVLW--SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 217 dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (479)
||...+| |+..... ..+....+.-..=.|+|+|..++
T Consensus 259 dg~~~iy~~dl~~~~~-----------------------------------------~~Lt~~~gi~~~Ps~spdG~~iv 297 (425)
T COG0823 259 DGSPDIYLMDLDGKNL-----------------------------------------PRLTNGFGINTSPSWSPDGSKIV 297 (425)
T ss_pred CCCccEEEEcCCCCcc-----------------------------------------eecccCCccccCccCCCCCCEEE
Confidence 7765555 5543321 11221112222457899998888
Q ss_pred EEEecCCeEE--EEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC-Cc--EEEEecCCCCCCCCCCceeeec
Q 011709 295 CSVGDDSCLI--LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NS--VRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 295 ~s~~~dg~i~--iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d-g~--I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
++.+..|.-. ++|..... . ..+......-..-.|+| ++.+|+..+.. |. |.+.|+.+ +..+..+.
T Consensus 298 f~Sdr~G~p~I~~~~~~g~~--~-~riT~~~~~~~~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~------~~~~~~lt 367 (425)
T COG0823 298 FTSDRGGRPQIYLYDLEGSQ--V-TRLTFSGGGNSNPVWSP-DGDKIVFESSSGGQWDIDKNDLAS------GGKIRILT 367 (425)
T ss_pred EEeCCCCCcceEEECCCCCc--e-eEeeccCCCCcCccCCC-CCCEEEEEeccCCceeeEEeccCC------CCcEEEcc
Confidence 8877777644 44555544 2 22222222223788999 88888777653 44 56666655 22233332
Q ss_pred CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCC
Q 011709 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 370 ~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~ 403 (479)
+......-.|.+++..++.+++.-+.=.++.+.
T Consensus 368 -~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s 400 (425)
T COG0823 368 -STYLNESPSWAPNGRMIMFSSGQGGGSVLSLVS 400 (425)
T ss_pred -ccccCCCCCcCCCCceEEEeccCCCCceEEEee
Confidence 333344566788887655444433333344433
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.23 E-value=0.042 Score=51.69 Aligned_cols=115 Identities=15% Similarity=0.139 Sum_probs=72.3
Q ss_pred CCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 011709 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (479)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~ 356 (479)
..++|++++-. .+ . ++.+ .++.|.+|++...+.-...........+.++... +++|+.|+....|.++..+..
T Consensus 87 ~~g~V~ai~~~-~~-~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 87 VKGPVTAICSF-NG-R-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp ESS-EEEEEEE-TT-E-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETT
T ss_pred ecCcceEhhhh-CC-E-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEcc
Confidence 46788888766 33 4 3333 3478999999887711111122233466677664 569999999999998865541
Q ss_pred CCCCCCCceeee--cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 357 TSNGVGSPINKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 357 ~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
...+..+ ......++++.|-+++. .++.+..+|.+.++....
T Consensus 160 -----~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 160 -----NNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -----TE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred -----CCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence 1223222 23355789999987776 567899999999998864
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.20 E-value=0.041 Score=48.96 Aligned_cols=198 Identities=14% Similarity=0.187 Sum_probs=103.9
Q ss_pred EeccCCCceeeeeecCCCC-cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCC
Q 011709 191 LTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 269 (479)
Q Consensus 191 ~~~h~~~~v~~l~~s~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (479)
+.+-... +.+|+|+|+.+ ++++....+.|...+.+.... .
T Consensus 17 l~g~~~e-~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vl-r------------------------------------- 57 (248)
T PF06977_consen 17 LPGILDE-LSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVL-R------------------------------------- 57 (248)
T ss_dssp -TT--S--EEEEEEETTTTEEEEEETTTTEEEEEETT--EE-E-------------------------------------
T ss_pred CCCccCC-ccccEEcCCCCeEEEEECCCCEEEEEcCCCCEE-E-------------------------------------
Confidence 3344443 89999999865 566666778887777642111 0
Q ss_pred CceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCc----eeee-----ccCCCCeEEEEecCCCCcEEE
Q 011709 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV----IKVE-----KAHDADLHCVDWNPLDDNLIL 340 (479)
Q Consensus 270 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~-----~~~~~~v~~l~~sp~~~~~l~ 340 (479)
...+.+ .+...+|++..++ .++++.-.++.+.++++....... ...+ ..++..+-.++|+| .++.|+
T Consensus 58 -~i~l~g-~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~ 133 (248)
T PF06977_consen 58 -RIPLDG-FGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLF 133 (248)
T ss_dssp -EEE-SS--SSEEEEEE-STT-EEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEE
T ss_pred -EEeCCC-CCCceeEEEECCC-EEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEE
Confidence 012223 3468889998766 555555458999999884432111 1111 13567799999999 656666
Q ss_pred EEeCCCcEEEEecCCCCCCCCCCcee--e------ecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCC
Q 011709 341 TGSADNSVRMFDRRNLTSNGVGSPIN--K------FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 412 (479)
Q Consensus 341 tgs~dg~I~iwd~~~~~~~~~~~~~~--~------~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~ 412 (479)
.+-...-..||.++.... ...+. . .......+.+++++|...++++-+.....|.++|..- +..
T Consensus 134 v~kE~~P~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G--~~~--- 205 (248)
T PF06977_consen 134 VAKERKPKRLYEVNGFPG---GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG--RVV--- 205 (248)
T ss_dssp EEEESSSEEEEEEESTT----SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EE---
T ss_pred EEeCCCChhhEEEccccC---ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC--CEE---
Confidence 666666677777764110 11111 1 1123346889999999888888888889999999442 221
Q ss_pred CCCCCCCCeeEEEeCCC-------CCceeEEEecCCCeeeec
Q 011709 413 PRTTNYPAGLFFQHAGH-------SPSSSIKFVLRESCLVDN 447 (479)
Q Consensus 413 ~~~~~~~~~l~~~~~gh-------~~~~~~~~sp~~~~l~~~ 447 (479)
..+.-..|. ...-.++|.++|...+++
T Consensus 206 --------~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 206 --------SSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp --------EEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred --------EEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 111111211 124688999988665554
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.28 Score=47.27 Aligned_cols=194 Identities=12% Similarity=0.136 Sum_probs=119.0
Q ss_pred eeeeecCCCC-cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCC
Q 011709 200 FALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (479)
Q Consensus 200 ~~l~~s~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (479)
.+++.++.+. ..+....+..|.+.|........ ....+.
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~---------------------------------------~~~vG~- 116 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG---------------------------------------SIPVGL- 116 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceee---------------------------------------Eeeecc-
Confidence 5788888887 44455556889999854322210 001111
Q ss_pred CceEEEEEeeCCCcEEEEEe--cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEe-CCCcEEEEecCC
Q 011709 279 DTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRN 355 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs-~dg~I~iwd~~~ 355 (479)
....+++++++..+.++-. .++++.+.|..+.+ ..........+ ..++++| ++..++... .++.|.+.|...
T Consensus 117 -~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~--~~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 117 -GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK--VTATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred -CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe--EEEEEecCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCC
Confidence 4568899999966666655 47899999988877 44444333334 8899999 777555554 789999999775
Q ss_pred CCCCCCCCceee-----ecCCCCcEEEEEEecCCCcEEEEEeCC--CCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC
Q 011709 356 LTSNGVGSPINK-----FEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (479)
Q Consensus 356 ~~~~~~~~~~~~-----~~~h~~~v~~l~~~p~~~~llas~s~D--g~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g 428 (479)
. .+.. ...-......+.++|++.++.+....+ +.+.+.|......... ......
T Consensus 192 ~-------~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~------------~~~~~~ 252 (381)
T COG3391 192 N-------SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT------------DLPVGS 252 (381)
T ss_pred c-------ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe------------cccccc
Confidence 2 2221 111223346789999999777666555 6888888776311110 001111
Q ss_pred CCCceeEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 429 HSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 429 h~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
- ....+..+|++.++...... .+.+.+-+
T Consensus 253 ~-~~~~v~~~p~g~~~yv~~~~----~~~V~vid 281 (381)
T COG3391 253 G-APRGVAVDPAGKAAYVANSQ----GGTVSVID 281 (381)
T ss_pred C-CCCceeECCCCCEEEEEecC----CCeEEEEe
Confidence 1 34567788888777766442 34444443
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.29 Score=47.23 Aligned_cols=198 Identities=17% Similarity=0.211 Sum_probs=126.2
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcE-EEeccCCCceeeeeecCCCCcEEEecC---CC
Q 011709 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVLSGGK---DK 218 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~v~~l~~s~~~~~l~s~s~---dg 218 (479)
-..+..++...+.+++...+..|.+.|..+. +... ...+. ....++++++++.+..+.. ++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~------------~~~~~~~vG~---~P~~~~~~~~~~~vYV~n~~~~~~ 140 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATN------------TVLGSIPVGL---GPVGLAVDPDGKYVYVANAGNGNN 140 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCccc------------ceeeEeeecc---CCceEEECCCCCEEEEEecccCCc
Confidence 3456677756667777777789999996654 2222 22233 2368999999987666554 67
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (479)
++.+.|..+...... ...-..+ ..+++.|++...+++-.
T Consensus 141 ~vsvid~~t~~~~~~----------------------------------------~~vG~~P-~~~a~~p~g~~vyv~~~ 179 (381)
T COG3391 141 TVSVIDAATNKVTAT----------------------------------------IPVGNTP-TGVAVDPDGNKVYVTNS 179 (381)
T ss_pred eEEEEeCCCCeEEEE----------------------------------------EecCCCc-ceEEECCCCCeEEEEec
Confidence 788877765433211 1111123 78999999966666667
Q ss_pred cCCeEEEEeCCCCCCCcee-e---eccCCCCeEEEEecCCCCcEEEEEeCC---CcEEEEecCCCCCCCCCCceee-ecC
Q 011709 299 DDSCLILWDARVGTSPVIK-V---EKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGSPINK-FEG 370 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~-~---~~~~~~~v~~l~~sp~~~~~l~tgs~d---g~I~iwd~~~~~~~~~~~~~~~-~~~ 370 (479)
.++.|.+.|..... ..+ . ...-...-..+.++| ++.++...... +.+...|... +..... +..
T Consensus 180 ~~~~v~vi~~~~~~--v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~------~~v~~~~~~~ 250 (381)
T COG3391 180 DDNTVSVIDTSGNS--VVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTAT------GNVTATDLPV 250 (381)
T ss_pred CCCeEEEEeCCCcc--eeccccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCC------ceEEEecccc
Confidence 89999999977655 221 1 011223345688999 77755555443 5889999887 333332 111
Q ss_pred CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
-......+.++|++..+.+.-+..+.+.+-|....
T Consensus 251 ~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 251 GSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred ccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 11145678999999986655566688999998773
No 356
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.02 E-value=0.3 Score=45.92 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=34.1
Q ss_pred ecCCCCcEEEEEeCCC--cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEec
Q 011709 148 ELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (479)
Q Consensus 148 ~~p~~~~~lat~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~ 225 (479)
|.++...+|.++..|| .+++-|+.+++ +..|....+....+..++|+++.++-......|+-.|+
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~-------------i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL 109 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGE-------------ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDL 109 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-E-------------EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEET
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCE-------------EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEEC
Confidence 4553445566565566 56666777662 23344333222346777888877654444567888888
Q ss_pred CCCc
Q 011709 226 QDHI 229 (479)
Q Consensus 226 ~~~~ 229 (479)
++.+
T Consensus 110 ~T~e 113 (386)
T PF14583_consen 110 DTLE 113 (386)
T ss_dssp TT--
T ss_pred CcCc
Confidence 7654
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.24 Score=45.77 Aligned_cols=115 Identities=11% Similarity=0.113 Sum_probs=77.0
Q ss_pred eeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCC--CC---CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC
Q 011709 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV--GT---SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 346 (479)
Q Consensus 272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~---~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg 346 (479)
..+..+-..-+.|+|+|++..++++=+..+.|.-|++.. +. ...........+..-.++... ++++.+++-.+|
T Consensus 156 ~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g 234 (307)
T COG3386 156 RLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGG 234 (307)
T ss_pred EeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCC
Confidence 344445556789999999976666666678899888763 11 101112223445556677777 777775555554
Q ss_pred -cEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEec-CCCcEEEEEeCC
Q 011709 347 -SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAED 394 (479)
Q Consensus 347 -~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~llas~s~D 394 (479)
.|.+|+.. ++.+..+..+...+++++|-- +.+.|++++...
T Consensus 235 ~~v~~~~pd-------G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 235 GRVVRFNPD-------GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ceEEEECCC-------CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 89999987 478888887777888888864 456677777654
No 358
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.00 E-value=0.13 Score=48.82 Aligned_cols=154 Identities=14% Similarity=0.090 Sum_probs=72.2
Q ss_pred eEEEEEeeCCCcEEEEEe--------------------cCCeEEEEeCCCCCCCceeeeccCC--CCeEEEEe--cCCCC
Q 011709 281 VEDVTFCPSSAQEFCSVG--------------------DDSCLILWDARVGTSPVIKVEKAHD--ADLHCVDW--NPLDD 336 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~l~~--sp~~~ 336 (479)
-+++-|.|.. +.++|.. ...++.+||+.+.+ .++++.-.. .....|.| +|...
T Consensus 183 gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~--~~Q~idLg~~g~~pLEvRflH~P~~~ 259 (461)
T PF05694_consen 183 GYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK--LLQTIDLGEEGQMPLEVRFLHDPDAN 259 (461)
T ss_dssp ---EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE--EEEEEES-TTEEEEEEEEE-SSTT--
T ss_pred CCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc--EeeEEecCCCCCceEEEEecCCCCcc
Confidence 4566677765 5566543 24689999999988 566654322 22445555 45222
Q ss_pred cEEEEEeCCCcEEEEecCCCCCCCCCCceeee-----------------cCCCCcEEEEEEecCCCcEEEEEeCCCCEEE
Q 011709 337 NLILTGSADNSVRMFDRRNLTSNGVGSPINKF-----------------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI 399 (479)
Q Consensus 337 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~-----------------~~h~~~v~~l~~~p~~~~llas~s~Dg~v~i 399 (479)
.-++.+--.++|..|--.....-. .+.+..+ ..-..-|+.|..|.|.++|.+++=.+|.|+.
T Consensus 260 ~gFvg~aLss~i~~~~k~~~g~W~-a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdvrq 338 (461)
T PF05694_consen 260 YGFVGCALSSSIWRFYKDDDGEWA-AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQ 338 (461)
T ss_dssp EEEEEEE--EEEEEEEE-ETTEEE-EEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEE
T ss_pred ceEEEEeccceEEEEEEcCCCCee-eeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEE
Confidence 333433345555555332110000 0111111 1123568999999999999989988999999
Q ss_pred EeCCCCCccccCCCCCCCCCCeeEEE--eCCC---------------CCceeEEEecCCCeeeecCCC
Q 011709 400 WDYEKVGKKVEQGPRTTNYPAGLFFQ--HAGH---------------SPSSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 400 wd~~~~~~~~~~~~~~~~~~~~l~~~--~~gh---------------~~~~~~~~sp~~~~l~~~~~~ 450 (479)
||++...++ .+... .+|. ....-+..|-||+.|..++.-
T Consensus 339 YDISDP~~P------------kl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSL 394 (461)
T PF05694_consen 339 YDISDPFNP------------KLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNSL 394 (461)
T ss_dssp EE-SSTTS-------------EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE---
T ss_pred EecCCCCCC------------cEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEeec
Confidence 999986332 22221 1111 113567888899988877653
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.93 E-value=0.44 Score=46.34 Aligned_cols=62 Identities=10% Similarity=0.149 Sum_probs=40.9
Q ss_pred ecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 331 ~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++. +....+....++.+.+.+-.. ... +. ..+++..++.||++++ +|.-..+|.+.|.+..-
T Consensus 186 l~~-~~~~~i~~~~g~~i~~i~~~~------~~~---i~-~~~~i~~iavSpng~~-iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 186 LSS-DRVVEILLANGETIYIIDENS------FKQ---ID-SDGPIIKIAVSPNGKF-IALFTDSGNLWVVSSDF 247 (410)
T ss_pred eec-CcceEEEEecCCEEEEEEccc------ccc---cc-CCCCeEEEEECCCCCE-EEEEECCCCEEEEECcc
Confidence 444 445555555666677555433 111 22 2468999999999995 67888899999987654
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.93 E-value=0.11 Score=48.97 Aligned_cols=194 Identities=13% Similarity=0.198 Sum_probs=101.3
Q ss_pred CcEEEEEeC----------CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEE
Q 011709 153 TKIVATHTD----------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (479)
Q Consensus 153 ~~~lat~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~v 222 (479)
..+|+.|+. .|.|.++++...... ..+..........++|++++-- ++ +|+.+. .+.|.+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~-------~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v 111 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN-------NFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYV 111 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS------------EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEccccc-------ceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEE
Confidence 567887754 288999999874100 0111112122223468888766 33 354444 589999
Q ss_pred EecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCe
Q 011709 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 302 (479)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 302 (479)
|++..... ......+.. ...+.++... + ++++.|.....
T Consensus 112 ~~l~~~~~-------------------------------------l~~~~~~~~-~~~i~sl~~~--~-~~I~vgD~~~s 150 (321)
T PF03178_consen 112 YDLDNSKT-------------------------------------LLKKAFYDS-PFYITSLSVF--K-NYILVGDAMKS 150 (321)
T ss_dssp EEEETTSS-------------------------------------EEEEEEE-B-SSSEEEEEEE--T-TEEEEEESSSS
T ss_pred EEccCccc-------------------------------------chhhheecc-eEEEEEEecc--c-cEEEEEEcccC
Confidence 99976430 001112222 2256666655 4 47888887777
Q ss_pred EEEEeCCCCCCCceee-eccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCC-CC--c--eeeecCCCCcEE
Q 011709 303 LILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV-GS--P--INKFEGHSAAVL 376 (479)
Q Consensus 303 i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~--~--~~~~~~h~~~v~ 376 (479)
|.++..+.....+... .......++++.|-+ +++.++++..+|.|.++.......... +. . +..+. ....|+
T Consensus 151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~ 228 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVN 228 (321)
T ss_dssp EEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EE
T ss_pred EEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccc
Confidence 7776444322112211 123456688999886 457999999999999998874222111 12 1 22222 235677
Q ss_pred EE---EEecC--CCc-----EEEEEeCCCCEEE
Q 011709 377 CV---QWSPD--KSS-----VFGSSAEDGLLNI 399 (479)
Q Consensus 377 ~l---~~~p~--~~~-----llas~s~Dg~v~i 399 (479)
++ .+.|. +.. .++-++.+|.|.+
T Consensus 229 ~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 229 SFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 77 55552 221 2457777888873
No 361
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.2 Score=44.78 Aligned_cols=174 Identities=13% Similarity=0.223 Sum_probs=106.2
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
+-...|.++.|+|++. .|++-.+.+.-.||=...+... ....+.+-++. -++.|..+|++.++--.+
T Consensus 83 g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~Gdli----------rtiPL~g~~Dp--E~Ieyig~n~fvi~dER~ 149 (316)
T COG3204 83 GETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLI----------RTIPLTGFSDP--ETIEYIGGNQFVIVDERD 149 (316)
T ss_pred cccccccceeeCCCcc-eEEEecCCCceEEEEecCCceE----------EEecccccCCh--hHeEEecCCEEEEEehhc
Confidence 4445699999999555 4555555555555544444111 11223444442 478999888888888889
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
+.+.++.+............ .-++......+.....++|.|.+ ..|+.+
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~------------------------------~i~L~~~~k~N~GfEGlA~d~~~-~~l~~a 198 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQ------------------------------KIPLGTTNKKNKGFEGLAWDPVD-HRLFVA 198 (316)
T ss_pred ceEEEEEEcCCccEEeccce------------------------------EEeccccCCCCcCceeeecCCCC-ceEEEE
Confidence 99999988754322111110 00001111225678899999988 456666
Q ss_pred ecCCeEEEEeCCCCCCCc-eeeeccC-------CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 298 GDDSCLILWDARVGTSPV-IKVEKAH-------DADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~-~~~~~~~-------~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
-+-.-+.||.+....... ......+ -..|.++.|++..+.+++-+..++.+.-.|..-
T Consensus 199 KEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 199 KERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred EccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 676777777665433111 1111112 235778999987888899998999999888873
No 362
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.84 E-value=0.004 Score=52.96 Aligned_cols=106 Identities=12% Similarity=0.141 Sum_probs=69.0
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
..++.|+.+|.|.+|....... .......-...|.++--.-.++.+..+++.||.||.|++.. .+.+-....|
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~-~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p------~k~~g~~g~h 143 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGA-HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP------NKVLGYVGQH 143 (238)
T ss_pred ceEEeecccceEEEecCCccch-HHHhhhcccccceeccccccccceeEEeccCCceeeecccc------Cceeeeeccc
Confidence 5689999999999998873221 11111122233333333333667999999999999999987 5556555666
Q ss_pred C-CcEEEEEEecCCCcEEEEE--eCCCCEEEEeCCCC
Q 011709 372 S-AAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKV 405 (479)
Q Consensus 372 ~-~~v~~l~~~p~~~~llas~--s~Dg~v~iwd~~~~ 405 (479)
. .++..+..+..++ .++.+ |.|..++.|++...
T Consensus 144 ~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 144 NFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cCCCcceeEEecCCc-eEEeeccccchhhhhcchhhh
Confidence 6 4555555555555 35666 77788888887764
No 363
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.78 E-value=0.22 Score=50.58 Aligned_cols=103 Identities=16% Similarity=0.167 Sum_probs=61.4
Q ss_pred cEEEEEecCC-----eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC------cEEEEecCCCCCCC
Q 011709 292 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMFDRRNLTSNG 360 (479)
Q Consensus 292 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg------~I~iwd~~~~~~~~ 360 (479)
.+++.|+.|| +|-.||.++.++..+..+.........+.+ ++.+.++||.++ ++..||..+..
T Consensus 382 ~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~--- 455 (571)
T KOG4441|consen 382 KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNT--- 455 (571)
T ss_pred EEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCc---
Confidence 6888888886 578899998885444333222223333333 678888888665 46788887633
Q ss_pred CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCC-----EEEEeCCC
Q 011709 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-----LNIWDYEK 404 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~-----v~iwd~~~ 404 (479)
...+..+..-..... ++.- +..|++.||.|+. |..||..+
T Consensus 456 -W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 456 -WTLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred -eeecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCC
Confidence 333333332222222 3322 3348889998873 56677665
No 364
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.01 Score=61.37 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=69.3
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCC
Q 011709 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 414 (479)
Q Consensus 335 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~ 414 (479)
.+..++.|++.|.|-..|++.. -.+...=..-.++|++++|+.+|. +++.|-.+|.|.+||+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-----L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~--------- 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-----LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRA--------- 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-----cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCC---------
Confidence 5578999999999999998862 122233333457999999999998 4667878999999999983
Q ss_pred CCCCCCeeEEEeCC-CCCceeEEEecCCCeeeecCC
Q 011709 415 TTNYPAGLFFQHAG-HSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 415 ~~~~~~~l~~~~~g-h~~~~~~~~sp~~~~l~~~~~ 449 (479)
.+-.+++.++. ++++..+.|..++..++++..
T Consensus 163 ---k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 163 ---KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDT 195 (1206)
T ss_pred ---cceeeeeecCCccceEEEEEEeCCCcEEEEccC
Confidence 22233333332 233777778888887888877
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.63 E-value=0.76 Score=44.75 Aligned_cols=86 Identities=7% Similarity=0.128 Sum_probs=55.4
Q ss_pred EeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCce
Q 011709 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 365 (479)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~ 365 (479)
++.+. ...+....++.+.+.+-.... . . ...+++..++.|| ++++||.-..+|.+.+....- .+.+
T Consensus 186 l~~~~-~~~i~~~~g~~i~~i~~~~~~--~---i-~~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf------~~~~ 251 (410)
T PF04841_consen 186 LSSDR-VVEILLANGETIYIIDENSFK--Q---I-DSDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDF------SEKL 251 (410)
T ss_pred eecCc-ceEEEEecCCEEEEEEccccc--c---c-cCCCCeEEEEECC-CCCEEEEEECCCCEEEEECcc------ccee
Confidence 44444 345555566667655433222 1 1 2346899999999 999999999999999988765 3455
Q ss_pred eeecCC-CCcEEEEEEecCCC
Q 011709 366 NKFEGH-SAAVLCVQWSPDKS 385 (479)
Q Consensus 366 ~~~~~h-~~~v~~l~~~p~~~ 385 (479)
.++... ......+.|+-+..
T Consensus 252 ~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 252 CEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred EEeecCcCCCCcEEEEECCCc
Confidence 555433 34566777776644
No 366
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.0086 Score=61.86 Aligned_cols=101 Identities=20% Similarity=0.294 Sum_probs=75.6
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
..++.|+..|.|...|++..-.+.. .-....++|++++|+. +|.+++.|-.+|.|.+||+.. +++++.+..|
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~-~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~------~k~l~~i~e~ 171 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLH-QNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHR------AKILKVITEH 171 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhh-cCCccCCcceeeEecC-CCceeccccCCCcEEEEEccC------Ccceeeeeec
Confidence 4688899999999999987543322 2235578999999999 999999999999999999998 6788888777
Q ss_pred CCcEEEE---EEecCCCcEEEEEeCCCCEEEEeCC
Q 011709 372 SAAVLCV---QWSPDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 372 ~~~v~~l---~~~p~~~~llas~s~Dg~v~iwd~~ 403 (479)
..+.+++ .+..++. .+.++...|. +|.+.
T Consensus 172 ~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence 6655554 3444454 4557776675 56544
No 367
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.57 E-value=0.52 Score=47.18 Aligned_cols=71 Identities=10% Similarity=-0.091 Sum_probs=38.6
Q ss_pred EEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCce-eeeeecCCCCcEEEecCCCcEEEEecCCCcccc
Q 011709 155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAE-FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 232 (479)
Q Consensus 155 ~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v-~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~ 232 (479)
.+..++.++.|+-.|..+++..-....... ........+ ..+... ++..++.++.+|.|.-+|.++++..-
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~------~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W 134 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLP------ADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVW 134 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCC------ccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEee
Confidence 556677788899999888744322111000 000000000 011111 22577788889999999998876543
No 368
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.52 E-value=0.0099 Score=37.37 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=28.6
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE 171 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~ 171 (479)
...+|.++.|+| ..++||.|+.+|.|.|+.+.
T Consensus 10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence 346799999999 78899999999999999984
No 369
>PHA02713 hypothetical protein; Provisional
Probab=96.50 E-value=0.075 Score=53.97 Aligned_cols=93 Identities=9% Similarity=0.064 Sum_probs=52.2
Q ss_pred eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC------cEEEEecCC-CCCCCCCCceeeecCCCCc
Q 011709 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMFDRRN-LTSNGVGSPINKFEGHSAA 374 (479)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg------~I~iwd~~~-~~~~~~~~~~~~~~~h~~~ 374 (479)
.+..||..+.++..+..+.........+.+ ++.+.+.|+.++ .+..||..+ .. ...+..+......
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~~~~~m~~~r~~ 505 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WELITTTESRLSA 505 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCC----eeEccccCccccc
Confidence 578899988775333322211112222333 567777777542 467888875 22 4444444433333
Q ss_pred EEEEEEecCCCcEEEEEeCCC--CEEEEeCCC
Q 011709 375 VLCVQWSPDKSSVFGSSAEDG--LLNIWDYEK 404 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg--~v~iwd~~~ 404 (479)
...+.+ +..|++.||.|| .+..||..+
T Consensus 506 ~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 506 LHTILH---DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred ceeEEE---CCEEEEEeeecceeehhhcCccc
Confidence 333333 334899999988 666777766
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.073 Score=51.08 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=94.3
Q ss_pred EEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC--c-----EEEecCCCcEEEEecCC
Q 011709 155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--Y-----VLSGGKDKSVVLWSIQD 227 (479)
Q Consensus 155 ~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~--~-----l~s~s~dg~i~vwd~~~ 227 (479)
+|.++.....++--|++.+ +.+..+.-|.+ |.-+.+.|+.+ . -+.|-.|..|+-||.+-
T Consensus 348 il~~~~~~~~l~klDIE~G------------KIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv 413 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERG------------KIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV 413 (644)
T ss_pred EeeCCCCcCcceeeecccc------------eeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccc
Confidence 3444555556777788877 66777777776 67788888743 2 24566688899999872
Q ss_pred CccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC----CCceEEEEEeeCCCcEEEEEecCCeE
Q 011709 228 HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH----EDTVEDVTFCPSSAQEFCSVGDDSCL 303 (479)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~~dg~i 303 (479)
.... .+...++| .....|.+-..+| +++.||.+|.|
T Consensus 414 ~~~~--------------------------------------kl~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdI 453 (644)
T KOG2395|consen 414 QGKN--------------------------------------KLAVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDI 453 (644)
T ss_pred cCcc--------------------------------------eeeeeeccccccccccceeeecCCc--eEEEeecCCcE
Confidence 2110 00111111 2234555555555 79999999999
Q ss_pred EEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 304 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 304 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
|+||--..+ ....+.+-..+|..|..+. +|.+|++.+ +..+.+.|+.-
T Consensus 454 RLYdri~~~--AKTAlPgLG~~I~hVdvta-dGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 454 RLYDRIGRR--AKTALPGLGDAIKHVDVTA-DGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred Eeehhhhhh--hhhcccccCCceeeEEeec-cCcEEEEec-ccEEEEEEEec
Confidence 999984333 4455667888999999998 888766544 67778877764
No 371
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.35 Score=45.76 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=75.2
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s 215 (479)
.....|+|.+|+|++ |...||.--.+.+|.+++....+... ......+..+. .|.+..|+.+ .-+|.-+
T Consensus 62 dm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l--------~~~~~ck~k~~-~IlGF~W~~s-~e~A~i~ 130 (657)
T KOG2377|consen 62 DMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQL--------EYTQECKTKNA-NILGFCWTSS-TEIAFIT 130 (657)
T ss_pred eecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhh--------HHHHHhccCcc-eeEEEEEecC-eeEEEEe
Confidence 344568999999999 77899999999999999986542111 01111111122 3788999876 3455444
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
..| +-+|.+.... ..++..+.|...|+-..|+++..-.++
T Consensus 131 ~~G-~e~y~v~pek---------------------------------------rslRlVks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 131 DQG-IEFYQVLPEK---------------------------------------RSLRLVKSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred cCC-eEEEEEchhh---------------------------------------hhhhhhhhcccCccEEEEccccceEee
Confidence 333 6666654221 222445567778888888887643344
Q ss_pred EEe-cCCeEEEEeCCCC
Q 011709 296 SVG-DDSCLILWDARVG 311 (479)
Q Consensus 296 s~~-~dg~i~iwd~~~~ 311 (479)
+.+ ...++.=+-++++
T Consensus 171 ~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 171 STTVLENVLNPFHFRAG 187 (657)
T ss_pred eccccccccccEEEeec
Confidence 433 3444444444443
No 372
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.36 E-value=0.31 Score=42.61 Aligned_cols=81 Identities=15% Similarity=0.080 Sum_probs=54.7
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeE-EEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH-CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 370 (479)
.+++.|...|.+.+.+..++. ....+... ..|. .....+ ++.+|..|+.|++.+..|.++ ..++...+-
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs--~~w~f~~~-~~vk~~a~~d~-~~glIycgshd~~~yalD~~~------~~cVykskc 133 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGS--QIWNFVIL-ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKT------YGCVYKSKC 133 (354)
T ss_pred CEEEEEEccCcEEEEEecchh--heeeeeeh-hhhccceEEcC-CCceEEEecCCCcEEEecccc------cceEEeccc
Confidence 468999999999999999996 23333221 2222 223345 789999999999999999998 567766554
Q ss_pred CCCcEEEEEEec
Q 011709 371 HSAAVLCVQWSP 382 (479)
Q Consensus 371 h~~~v~~l~~~p 382 (479)
..+...+-+..|
T Consensus 134 gG~~f~sP~i~~ 145 (354)
T KOG4649|consen 134 GGGTFVSPVIAP 145 (354)
T ss_pred CCceeccceecC
Confidence 333333334444
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.22 Score=44.15 Aligned_cols=111 Identities=15% Similarity=0.229 Sum_probs=76.0
Q ss_pred eEEEEEeeCCCcEEEEEecCCe-EEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC-----CcEEEEecC
Q 011709 281 VEDVTFCPSSAQEFCSVGDDSC-LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRR 354 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d-----g~I~iwd~~ 354 (479)
...++|+|..+.-++.+-.-|+ ..++|....+.+..........-.-.-.||| +|.+|++.-.| |.|-|||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence 4467888877666777766665 5688998877543332221111222357899 99998876544 689999999
Q ss_pred CCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEE
Q 011709 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 400 (479)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iw 400 (479)
.. -..+-++..|.-....+.|.+||+. ++.+ +|-|..-
T Consensus 149 ~~-----fqrvgE~~t~GiGpHev~lm~DGrt-lvva--nGGIeth 186 (366)
T COG3490 149 EG-----FQRVGEFSTHGIGPHEVTLMADGRT-LVVA--NGGIETH 186 (366)
T ss_pred cc-----cceecccccCCcCcceeEEecCCcE-EEEe--CCceecc
Confidence 63 3567788899888899999999995 4444 3446655
No 374
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.32 E-value=0.64 Score=41.89 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=68.7
Q ss_pred ceEEEEEeeCCCcEEEEEecCCeEEEE-eCCCCCCCceeeeccCC-CCeEEEEecCCCCcEEEEEe---CCCcEEEEecC
Q 011709 280 TVEDVTFCPSSAQEFCSVGDDSCLILW-DARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGS---ADNSVRMFDRR 354 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~l~tgs---~dg~I~iwd~~ 354 (479)
.+..-.|.+++ .+.+....+...+++ +...+............ ..|.++.+|| +|..+|.-. .++.|.+=-+.
T Consensus 67 ~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 67 SLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred ccccccccCCC-CEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEE
Confidence 56777899987 555555555566666 33344321122211111 2899999999 887776655 35778877665
Q ss_pred CCCCC---CCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEE
Q 011709 355 NLTSN---GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI 399 (479)
Q Consensus 355 ~~~~~---~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~i 399 (479)
..... ....++.........++.+.|.+++..+++....++.+..
T Consensus 145 r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 145 RDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred eCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 43321 1112333333445689999999999854444444554444
No 375
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.32 E-value=0.18 Score=51.18 Aligned_cols=103 Identities=16% Similarity=0.214 Sum_probs=60.7
Q ss_pred cEEEEEecCC------eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCc-----EEEEecCCCCCCC
Q 011709 292 QEFCSVGDDS------CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-----VRMFDRRNLTSNG 360 (479)
Q Consensus 292 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~-----I~iwd~~~~~~~~ 360 (479)
.++++|+.++ ++..||..++.+..+..+..-........+ ++.+.+.||.|+. |..||.++..
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~--- 502 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQ--- 502 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCc---
Confidence 6788887554 678999998885433333222222223333 6788888888873 7778888733
Q ss_pred CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCC-----EEEEeCCC
Q 011709 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-----LNIWDYEK 404 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~-----v~iwd~~~ 404 (479)
...+..+......+..+. .+..+++.|+.||. |..||..+
T Consensus 503 -W~~v~~m~~~rs~~g~~~---~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 503 -WTMVAPMTSPRSAVGVVV---LGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred -eeEcccCccccccccEEE---ECCEEEEEecccCccccceeEEcCCCC
Confidence 344433333333333333 34448889998864 55565544
No 376
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.30 E-value=0.6 Score=44.56 Aligned_cols=103 Identities=15% Similarity=0.225 Sum_probs=59.4
Q ss_pred EEEEe-eCCCcEEEEEecCCeEEEE--eCCCCCCCceeeeccCCCCeEE-EEecCCCCcEEEEEeCCC----cEEEEecC
Q 011709 283 DVTFC-PSSAQEFCSVGDDSCLILW--DARVGTSPVIKVEKAHDADLHC-VDWNPLDDNLILTGSADN----SVRMFDRR 354 (479)
Q Consensus 283 ~l~~~-~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~-l~~sp~~~~~l~tgs~dg----~I~iwd~~ 354 (479)
...|. +++..++.....||.-+|| +...+. ...+......|.. +.|++..+.+.+++..++ .|+..++.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~---~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK---PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE---EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc---eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 44554 6666777777788865555 544443 3455556677754 678884455666776633 44444555
Q ss_pred CCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC
Q 011709 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394 (479)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D 394 (479)
. +..+..+....+....+.|+|++++++.+++.-
T Consensus 316 ~------~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 316 S------GGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp E------TTEEEESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred C------CCCeEeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 1 234444543333336999999999877777643
No 377
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.082 Score=55.35 Aligned_cols=164 Identities=10% Similarity=0.077 Sum_probs=101.1
Q ss_pred EEEeccCCCceeeeeecCCCCcE--EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCC
Q 011709 189 LILTGHQDNAEFALAMCPTEPYV--LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 266 (479)
Q Consensus 189 ~~~~~h~~~~v~~l~~s~~~~~l--~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (479)
..+.-|..-.+..+...+|+... +..+.+-.|..||+++-.........
T Consensus 93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~----------------------------- 143 (1405)
T KOG3630|consen 93 LTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTV----------------------------- 143 (1405)
T ss_pred cceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcc-----------------------------
Confidence 45556655556666777776543 34445557889999764332111100
Q ss_pred CCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC
Q 011709 267 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 346 (479)
Q Consensus 267 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg 346 (479)
....-.+......-..++.|.|.-+...+.+..|+.|++.-+......+ ..+ .-....++++|+| .|..++.|-..|
T Consensus 144 pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v-~s~-p~t~~~Tav~WSp-rGKQl~iG~nnG 220 (1405)
T KOG3630|consen 144 PLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNV-TSF-PVTNSQTAVLWSP-RGKQLFIGRNNG 220 (1405)
T ss_pred ccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhh-ccc-CcccceeeEEecc-ccceeeEecCCC
Confidence 0000011111223456888998766678888999999998876554222 222 3456789999999 999999999999
Q ss_pred cEEEEecCCCCCCCCCCceeeecC----CCCcEEEEEEecCCCcEEEEE
Q 011709 347 SVRMFDRRNLTSNGVGSPINKFEG----HSAAVLCVQWSPDKSSVFGSS 391 (479)
Q Consensus 347 ~I~iwd~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~llas~ 391 (479)
++.-|-..- +....+.. ....|.+|.|-....++++-+
T Consensus 221 t~vQy~P~l-------eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 221 TEVQYEPSL-------EIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred eEEEeeccc-------ceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 999887653 21112211 136799999988777544333
No 378
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.20 E-value=0.52 Score=41.28 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=79.6
Q ss_pred EEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCC
Q 011709 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 363 (479)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~ 363 (479)
+...++...+++.|+..+.+.--|..+++ +.. ...-...|.+-+.- -+++++.|+..|.+++.+..+ +.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~--~~W-e~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~t------Gs 84 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGN--LIW-EAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKT------GS 84 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCc--EEe-ehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecc------hh
Confidence 34456666788999999999999999988 332 22334455544433 467899999999999999998 66
Q ss_pred ceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCc
Q 011709 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 407 (479)
Q Consensus 364 ~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~ 407 (479)
.+..+..-..-=......+++. ++..++.|++...-|.++.+.
T Consensus 85 ~~w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 85 QIWNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred heeeeeehhhhccceEEcCCCc-eEEEecCCCcEEEecccccce
Confidence 6766654332222344567777 677999999999999887533
No 379
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.17 E-value=0.4 Score=43.24 Aligned_cols=155 Identities=16% Similarity=0.174 Sum_probs=89.3
Q ss_pred ceEEEEEeeCCCcEEEEEecC--CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEe-cCCC
Q 011709 280 TVEDVTFCPSSAQEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD-RRNL 356 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd-~~~~ 356 (479)
.+.+.++++++..+.+....+ ..+.++...... .... ....+..-.|++ ++.+.+....+...+++. ....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~---~~~~--~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV---RPVL--TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc---eeec--cCCccccccccC-CCCEEEEEcCCCceEEEEecCCC
Confidence 688999999995444444233 345555443322 2222 223788899999 677777767677777764 2221
Q ss_pred CCCCCCCceeeecCC--CCcEEEEEEecCCCcEEEEE--eCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCc
Q 011709 357 TSNGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPS 432 (479)
Q Consensus 357 ~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~llas~--s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~ 432 (479)
. ..++ ..... .+.|+.+.++|||.++.+.. ..++.|.|=-+......... ....+. .........+
T Consensus 99 ~----~~~~-~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~---~l~~~~--~~~~~~~~~v 168 (253)
T PF10647_consen 99 T----GEPV-EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR---RLTGPR--RVAPPLLSDV 168 (253)
T ss_pred c----ceeE-EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc---eeccce--EecccccCcc
Confidence 1 1222 12211 12899999999999865444 23577777776653222000 000111 1112234568
Q ss_pred eeEEEecCCCeeeecCCC
Q 011709 433 SSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 433 ~~~~~sp~~~~l~~~~~~ 450 (479)
++++|.+++..++.+...
T Consensus 169 ~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 169 TDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred eeeeecCCCEEEEEeCCC
Confidence 999999999988877663
No 380
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.14 E-value=0.02 Score=36.00 Aligned_cols=33 Identities=24% Similarity=0.575 Sum_probs=29.4
Q ss_pred cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecC
Q 011709 321 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (479)
Q Consensus 321 ~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~ 354 (479)
.....|.+++|+| ...+||.|+.+|.|.+|.+.
T Consensus 9 ~l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence 3456799999999 89999999999999999984
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.11 E-value=0.26 Score=50.10 Aligned_cols=143 Identities=14% Similarity=0.105 Sum_probs=78.3
Q ss_pred CceEEEEEeeCCCcEEEEEe-----cCC--eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC------
Q 011709 279 DTVEDVTFCPSSAQEFCSVG-----DDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------ 345 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~-----~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d------ 345 (479)
..+.+.+++|+|....++.. .|. .|.+++..... .....+ .....-.|+| ++..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~---~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA---VQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc---eeeecC--CCCCCceECC-CCCceEEEecCcceEEE
Confidence 45788899999965555542 233 55555652222 222222 2378899999 87777776533
Q ss_pred ------CcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC--CCccccCCCCCCC
Q 011709 346 ------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK--VGKKVEQGPRTTN 417 (479)
Q Consensus 346 ------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~--~~~~~~~~~~~~~ 417 (479)
+.+.+.+++. +.... ...+.|..+.|+|||.++.+.. +|.|.|=-+.. .|. ... .
T Consensus 424 ~~~~~~gql~~~~vd~------ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l-----~ 486 (591)
T PRK13616 424 IRDPATGQLARTPVDA------SAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YAL-----T 486 (591)
T ss_pred eccCCCceEEEEeccC------chhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eee-----c
Confidence 2233333332 11111 2346799999999999865444 56777632222 121 100 0
Q ss_pred CCCeeEEEeCCCCC-ceeEEEecCCCeeeec
Q 011709 418 YPAGLFFQHAGHSP-SSSIKFVLRESCLVDN 447 (479)
Q Consensus 418 ~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~ 447 (479)
.+.++. .+-.. +.++.|..++..++..
T Consensus 487 ~~~~l~---~~l~~~~~~l~W~~~~~L~V~~ 514 (591)
T PRK13616 487 NPREVG---PGLGDTAVSLDWRTGDSLVVGR 514 (591)
T ss_pred ccEEee---cccCCccccceEecCCEEEEEe
Confidence 111111 22233 4788999998866443
No 382
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=1.3 Score=39.75 Aligned_cols=168 Identities=14% Similarity=0.159 Sum_probs=99.7
Q ss_pred eccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCc
Q 011709 192 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR 271 (479)
Q Consensus 192 ~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (479)
.|-+.. +.++.|+|+.+.|++......-.|+=...+.....
T Consensus 82 ~g~~~n-vS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt-------------------------------------- 122 (316)
T COG3204 82 LGETAN-VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT-------------------------------------- 122 (316)
T ss_pred cccccc-ccceeeCCCcceEEEecCCCceEEEEecCCceEEE--------------------------------------
Confidence 344444 88999999999888887777666664433322111
Q ss_pred eeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCC--------ceeeeccCCCCeEEEEecCCCCcEEEEEe
Q 011709 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--------VIKVEKAHDADLHCVDWNPLDDNLILTGS 343 (479)
Q Consensus 272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~v~~l~~sp~~~~~l~tgs 343 (479)
..+.+ -.....+.+...+ .+.++--.++.+.++.+...... .+......+.....++|+| ....|+.+=
T Consensus 123 iPL~g-~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aK 199 (316)
T COG3204 123 IPLTG-FSDPETIEYIGGN-QFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAK 199 (316)
T ss_pred ecccc-cCChhHeEEecCC-EEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEE
Confidence 11111 1223456666555 45555555667776665544210 0111112267788999999 666677777
Q ss_pred CCCcEEEEecCCCCCCCCCCceeeecCC-------CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 344 ADNSVRMFDRRNLTSNGVGSPINKFEGH-------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 344 ~dg~I~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.-.-+.||.+....+. -.++....+ -..|.++.|++....+|+-+..++.+.-.|..-
T Consensus 200 Er~P~~I~~~~~~~~~---l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 200 ERNPIGIFEVTQSPSS---LSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccCCcEEEEEecCCcc---cccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 7777777776642211 011111111 235788999998888888887788888777765
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.80 E-value=2.1 Score=41.87 Aligned_cols=201 Identities=14% Similarity=0.111 Sum_probs=104.5
Q ss_pred eeEEEecCCCCcEEEEE-eCCC----cEEEEECCCCCCccccCCCCCCCCcE-EEeccCCCceeeeeecCCCCcEEEecC
Q 011709 143 VNRIRELPQNTKIVATH-TDSP----DVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~-s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
+....++| ++++||-+ +..| +|+++|+.++. .+. .+.... ...+.|.++++.|+-...
T Consensus 126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~------------~l~d~i~~~~---~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGK------------FLPDGIENPK---FSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTE------------EEEEEEEEEE---SEEEEECTTSSEEEEEEC
T ss_pred eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCc------------CcCCcccccc---cceEEEeCCCCEEEEEEe
Confidence 34567888 66666644 4445 59999999882 211 122211 124999999886654443
Q ss_pred CC-----------cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCC--ceEE
Q 011709 217 DK-----------SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED--TVED 283 (479)
Q Consensus 217 dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~ 283 (479)
+. .|..|.+.+..... ...+..... ....
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~gt~~~~d--------------------------------------~lvfe~~~~~~~~~~ 231 (414)
T PF02897_consen 190 DEDQRTSDSGYPRQVYRHKLGTPQSED--------------------------------------ELVFEEPDEPFWFVS 231 (414)
T ss_dssp STTTSS-CCGCCEEEEEEETTS-GGG---------------------------------------EEEEC-TTCTTSEEE
T ss_pred CcccccccCCCCcEEEEEECCCChHhC--------------------------------------eeEEeecCCCcEEEE
Confidence 22 37777775532210 122333222 2567
Q ss_pred EEEeeCCCcEEEEEecC---CeEEEEeCCCC---CCCceeeeccCCCCe-EEEEecCCCCcEEEEEeC---CCcEEEEec
Q 011709 284 VTFCPSSAQEFCSVGDD---SCLILWDARVG---TSPVIKVEKAHDADL-HCVDWNPLDDNLILTGSA---DNSVRMFDR 353 (479)
Q Consensus 284 l~~~~~~~~~l~s~~~d---g~i~iwd~~~~---~~~~~~~~~~~~~~v-~~l~~sp~~~~~l~tgs~---dg~I~iwd~ 353 (479)
+..++++..+++..... ..+.+.|+... .. ....+......+ ..+... ++.+++.... .+.|.-.++
T Consensus 232 ~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~-~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l 308 (414)
T PF02897_consen 232 VSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDA-KPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDL 308 (414)
T ss_dssp EEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEET
T ss_pred EEecCcccEEEEEEEccccCCeEEEEeccccCCCcC-CcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecc
Confidence 88899986555544433 35888888875 21 222333333333 444444 3444443333 356777777
Q ss_pred CCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCC--CEEEEeCC
Q 011709 354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYE 403 (479)
Q Consensus 354 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg--~v~iwd~~ 403 (479)
..... ......+..|...+.-..+...+.+|++....++ .|+++|+.
T Consensus 309 ~~~~~---~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 309 ADPSP---AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp TSTSG---GGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ccccc---ccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 76321 0112255556654333444455666777776665 57788887
No 384
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.70 E-value=0.67 Score=44.47 Aligned_cols=151 Identities=11% Similarity=0.106 Sum_probs=80.1
Q ss_pred CceEEEEEeeCCCcEEEEEe-----------cCC-eEEEEeCCCCCC--CceeeeccCCCCeEEEEecCCCCcEEEEEeC
Q 011709 279 DTVEDVTFCPSSAQEFCSVG-----------DDS-CLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSA 344 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~ 344 (479)
.....|+|.++| +++++.. ..+ .|.+++-..+.. .....+.........+++.+ ++ +++ ++.
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATP 89 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCC
Confidence 345688999998 5555542 223 677776543321 11233333334568899988 77 444 444
Q ss_pred CCcEEEEecCCCCCCC-CCCce-eeecC----CCCcEEEEEEecCCCcEEEEEeCCC-------------------CEEE
Q 011709 345 DNSVRMFDRRNLTSNG-VGSPI-NKFEG----HSAAVLCVQWSPDKSSVFGSSAEDG-------------------LLNI 399 (479)
Q Consensus 345 dg~I~iwd~~~~~~~~-~~~~~-~~~~~----h~~~v~~l~~~p~~~~llas~s~Dg-------------------~v~i 399 (479)
....++.|........ ..+.+ ..+.. +......++|.|+|. |+++.+..+ .|.-
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEE
Confidence 4433344543211000 01112 22322 234578999999997 555555321 1112
Q ss_pred EeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 400 WDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 400 wd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
+|... ..+.....|+.....++|+|++..+++-..
T Consensus 169 ~~pdg---------------~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 169 YNPDG---------------GKLRVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred EecCC---------------CeEEEEecCcCCCccceECCCCCEEEEccC
Confidence 22111 122234567787899999999988776554
No 385
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.63 E-value=2.5 Score=41.40 Aligned_cols=205 Identities=15% Similarity=0.151 Sum_probs=104.5
Q ss_pred EEecCCCCcEEEEEeCCC----------cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCc-eeeeeecCCCCcEEEe
Q 011709 146 IRELPQNTKIVATHTDSP----------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA-EFALAMCPTEPYVLSG 214 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-v~~l~~s~~~~~l~s~ 214 (479)
+.|.+++..++.+...+. .|+.|.+.+... .....+....... ...+..++++++|+..
T Consensus 175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~----------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~ 244 (414)
T PF02897_consen 175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS----------EDELVFEEPDEPFWFVSVSRSKDGRYLFIS 244 (414)
T ss_dssp EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GG----------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEE
T ss_pred EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChH----------hCeeEEeecCCCcEEEEEEecCcccEEEEE
Confidence 899995455555554331 378888877621 2234455544433 4588899999976643
Q ss_pred cC---C-CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 215 GK---D-KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 215 s~---d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
+. + ..+.+.|+..... ..... ..+......+....-+..+
T Consensus 245 ~~~~~~~s~v~~~d~~~~~~-----------------------------------~~~~~-~~l~~~~~~~~~~v~~~~~ 288 (414)
T PF02897_consen 245 SSSGTSESEVYLLDLDDGGS-----------------------------------PDAKP-KLLSPREDGVEYYVDHHGD 288 (414)
T ss_dssp EESSSSEEEEEEEECCCTTT-----------------------------------SS-SE-EEEEESSSS-EEEEEEETT
T ss_pred EEccccCCeEEEEeccccCC-----------------------------------CcCCc-EEEeCCCCceEEEEEccCC
Confidence 32 2 3467777654210 00011 2222233333333333333
Q ss_pred CcEEEEEe---cCCeEEEEeCCCCCCC-ceeeeccCCC--CeEEEEecCCCCcEEEEEeCCC--cEEEEecCCCCCCCCC
Q 011709 291 AQEFCSVG---DDSCLILWDARVGTSP-VIKVEKAHDA--DLHCVDWNPLDDNLILTGSADN--SVRMFDRRNLTSNGVG 362 (479)
Q Consensus 291 ~~~l~s~~---~dg~i~iwd~~~~~~~-~~~~~~~~~~--~v~~l~~sp~~~~~l~tgs~dg--~I~iwd~~~~~~~~~~ 362 (479)
.+++... .++.|...++...... ....+..+.. .+..+... .+.+++....++ .|+++|+.. +
T Consensus 289 -~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~------~ 359 (414)
T PF02897_consen 289 -RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDD------G 359 (414)
T ss_dssp -EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-------T
T ss_pred -EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCC------C
Confidence 4444332 3467878888876621 1223445555 35555543 456666666665 588899882 2
Q ss_pred CceeeecC-CCCcEEEEEEecCCCcEEEEEeC---CCCEEEEeCCCC
Q 011709 363 SPINKFEG-HSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKV 405 (479)
Q Consensus 363 ~~~~~~~~-h~~~v~~l~~~p~~~~llas~s~---Dg~v~iwd~~~~ 405 (479)
.....+.. -.+.|..+...+++..++++.+. -+++..||+.++
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 33333332 23446667666777666655554 367888888774
No 386
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.62 E-value=0.053 Score=46.35 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=41.4
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCC-CCeEEEEecCCCCcEEEEE--eCCCcEEEEecCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTG--SADNSVRMFDRRN 355 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~l~tg--s~dg~I~iwd~~~ 355 (479)
.+..+++.||.|+.|.+.-.+ .+.....|. .++..+..+. .+..++.. |.|..++.|++..
T Consensus 115 ~~~c~~~~dg~ir~~n~~p~k--~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 115 SLGCVGAQDGRIRACNIKPNK--VLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEeccCCceeeeccccCc--eeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 588899999999999998777 455555565 4444444444 55566666 6666666666654
No 387
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.59 E-value=0.017 Score=58.65 Aligned_cols=82 Identities=15% Similarity=0.233 Sum_probs=46.7
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC---CCCcEEEe
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEPYVLSG 214 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~---~~~~l~s~ 214 (479)
+.+|.|..+.|-..+...++ -.-|...|||+.--... -...........-++.+.-+.|.| +.-++..+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~------iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~ 201 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGE------IQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYG 201 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccc------cccceEEeecCcCCCCcceeeecccccccceeeec
Confidence 56788888888654333333 34478999998753111 011222222222223345566665 34466677
Q ss_pred cCCCcEEEEecCC
Q 011709 215 GKDKSVVLWSIQD 227 (479)
Q Consensus 215 s~dg~i~vwd~~~ 227 (479)
-.+++|++.++++
T Consensus 202 ~~~~~i~lL~~~r 214 (1283)
T KOG1916|consen 202 LKGGEIRLLNINR 214 (1283)
T ss_pred cCCCceeEeeech
Confidence 7889999988764
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.55 E-value=0.5 Score=46.40 Aligned_cols=159 Identities=11% Similarity=0.082 Sum_probs=93.1
Q ss_pred CceEEEEEeeCCCcEEEEEe--cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCC---CCcEEEEEeCCCcEEEEec
Q 011709 279 DTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL---DDNLILTGSADNSVRMFDR 353 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~---~~~~l~tgs~dg~I~iwd~ 353 (479)
.++..++|. ||...+++.- .+|.+++=|-+ ++. .-..|..++|.|. +..-+++......|.||.+
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~-----viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK-----VIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCcc-----Eee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 478899996 4546666643 33444432221 233 3345889999983 1335566667889999998
Q ss_pred CCCCCCCCCCceeeecCC-CC----cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC
Q 011709 354 RNLTSNGVGSPINKFEGH-SA----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (479)
Q Consensus 354 ~~~~~~~~~~~~~~~~~h-~~----~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g 428 (479)
.....+. .+.+..-..+ .. -..++.|||... +|+.-.....-.+++++..+. ++..-..+
T Consensus 90 ~~s~~e~-~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~s-------------rVkaDi~~ 154 (671)
T PF15390_consen 90 CPSTTER-NKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSS-------------RVKADIKT 154 (671)
T ss_pred ccCcccc-ccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCc-------------eEEEeccC
Confidence 7432211 2222221111 11 124678999988 566655554455777776322 33334456
Q ss_pred CCCceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 429 HSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 429 h~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
+..|.+.+|.+||+.|+.+-.. .=.-.+|+-.+.
T Consensus 155 ~G~IhCACWT~DG~RLVVAvGS----sLHSyiWd~~qK 188 (671)
T PF15390_consen 155 SGLIHCACWTKDGQRLVVAVGS----SLHSYIWDSAQK 188 (671)
T ss_pred CceEEEEEecCcCCEEEEEeCC----eEEEEEecCchh
Confidence 6669999999999877665432 345567765543
No 389
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.53 E-value=0.51 Score=47.76 Aligned_cols=112 Identities=10% Similarity=0.203 Sum_probs=66.8
Q ss_pred EEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec-CCCCcEEEEEEe--cCCCcEEEEEeCCCCEEEEeCC
Q 011709 327 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWS--PDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 327 ~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~--p~~~~llas~s~Dg~v~iwd~~ 403 (479)
.-+.-+. -+..-++-+....+.|||.+. +....+-. ...+.|..+.|. |+++.+| +.|....|.++--.
T Consensus 33 ~li~gss-~~k~a~V~~~~~~LtIWD~~~------~~lE~~~~f~~~~~I~dLDWtst~d~qsiL-aVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 33 SLISGSS-IKKIAVVDSSRSELTIWDTRS------GVLEYEESFSEDDPIRDLDWTSTPDGQSIL-AVGFPHHVLLYTQL 104 (631)
T ss_pred ceEeecc-cCcEEEEECCCCEEEEEEcCC------cEEEEeeeecCCCceeeceeeecCCCCEEE-EEEcCcEEEEEEcc
Confidence 3344443 334434444445799999987 33222221 346789999886 6788665 66678899998643
Q ss_pred CCCccccCCCCCCCCCCeeEEEeCCCCC--ceeEEEecCCCeeeecCCC
Q 011709 404 KVGKKVEQGPRTTNYPAGLFFQHAGHSP--SSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~l~~~~~gh~~--~~~~~~sp~~~~l~~~~~~ 450 (479)
.. ......+.-.+-..+....|++ +.+..|.++|..++++|+.
T Consensus 105 R~----dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNq 149 (631)
T PF12234_consen 105 RY----DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQ 149 (631)
T ss_pred ch----hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCE
Confidence 31 1111111111122233445554 8999999999999999883
No 390
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.48 E-value=0.94 Score=39.14 Aligned_cols=108 Identities=9% Similarity=0.117 Sum_probs=71.9
Q ss_pred CceEEEEEeeCCCcEEEEEecCCeEEEEe--CCCCCC---Cceeeecc----CCCCeEEEEecCCCCcEEEEEeCCCcEE
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWD--ARVGTS---PVIKVEKA----HDADLHCVDWNPLDDNLILTGSADNSVR 349 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd--~~~~~~---~~~~~~~~----~~~~v~~l~~sp~~~~~l~tgs~dg~I~ 349 (479)
..-+.++|+.+...+.++-+.+-+|.-|| ..++.. ..+..+.. ....--.++... .|++.++.-..|+|.
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQ 236 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEE
Confidence 34467888887766777777777887777 444431 11111111 111122345555 788889988899999
Q ss_pred EEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCc-EEEEEeC
Q 011709 350 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-VFGSSAE 393 (479)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-llas~s~ 393 (479)
..|..+ ++.+.++.-....|++++|--.+-. +.+++..
T Consensus 237 ~~dp~t------GK~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 237 KVDPTT------GKILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred EECCCC------CcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 999999 8999999999999999999754222 3444443
No 391
>PHA03098 kelch-like protein; Provisional
Probab=95.32 E-value=1.2 Score=45.38 Aligned_cols=103 Identities=5% Similarity=0.039 Sum_probs=51.8
Q ss_pred cEEEEEecC------CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC--------cEEEEecCCCC
Q 011709 292 QEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--------SVRMFDRRNLT 357 (479)
Q Consensus 292 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg--------~I~iwd~~~~~ 357 (479)
.+++.|+.+ ..+..||..+.++..............++.. ++.+++.||.++ .+.+||..+..
T Consensus 391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH---DGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE---CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 566766632 4688999988764322221111111122222 556777776532 38889987622
Q ss_pred CCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC-----CCEEEEeCCC
Q 011709 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (479)
Q Consensus 358 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D-----g~v~iwd~~~ 404 (479)
...+..+.........+.+ ++. +++.||.+ ..|.+||..+
T Consensus 468 ----W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 468 ----WTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ----eeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCC
Confidence 2222222211111122222 344 77777764 4677788765
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=2 Score=38.39 Aligned_cols=212 Identities=13% Similarity=0.181 Sum_probs=116.2
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCc-EEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPD-VLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s 215 (479)
+.-+..-..|.++|..+.-++.+-.-|+ ..++|............ .....+.||. .|||+|.+|...-
T Consensus 64 ~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s----~~~RHfyGHG-------vfs~dG~~LYATE 132 (366)
T COG3490 64 TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS----QEGRHFYGHG-------VFSPDGRLLYATE 132 (366)
T ss_pred eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec----ccCceeeccc-------ccCCCCcEEEeec
Confidence 3344455678889988888888877775 56889887632211110 1112233332 4899999888654
Q ss_pred CC-----CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 216 KD-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 216 ~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
.| |.|-|||.+.... .+..+..|.-.-..+.|.+||
T Consensus 133 ndfd~~rGViGvYd~r~~fq---------------------------------------rvgE~~t~GiGpHev~lm~DG 173 (366)
T COG3490 133 NDFDPNRGVIGVYDAREGFQ---------------------------------------RVGEFSTHGIGPHEVTLMADG 173 (366)
T ss_pred CCCCCCCceEEEEecccccc---------------------------------------eecccccCCcCcceeEEecCC
Confidence 43 7889999874322 123445566666788999999
Q ss_pred CcEEEEEec------------------CCeEEEEeCCCCCCCceeeec--cCCCCeEEEEecCCCCcEEEEEeCCCcEE-
Q 011709 291 AQEFCSVGD------------------DSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVR- 349 (479)
Q Consensus 291 ~~~l~s~~~------------------dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~l~tgs~dg~I~- 349 (479)
. .++.+.. .-++.+.|..++..-...++. -+.-.|..++..+ ++..++.+-..|--.
T Consensus 174 r-tlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d 251 (366)
T COG3490 174 R-TLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRND 251 (366)
T ss_pred c-EEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCcc
Confidence 4 4544322 112333343343310011111 2334566777776 565554443332100
Q ss_pred ---EEecCCCCCCCCCCceeeecCC-------CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 350 ---MFDRRNLTSNGVGSPINKFEGH-------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 350 ---iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+.-... .++++.-+... ..-|-+|+.+-+...+.+|+=..+...+||..++
T Consensus 252 ~ppLvg~~~-----~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 252 LPPLVGHFR-----KGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred CCcceeecc-----CCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence 000000 03333333321 2357788888777766666666777889999984
No 393
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.28 E-value=1.4 Score=45.00 Aligned_cols=115 Identities=10% Similarity=0.081 Sum_probs=62.8
Q ss_pred eEEEEEeeCCCcEEEEEecC------------CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcE
Q 011709 281 VEDVTFCPSSAQEFCSVGDD------------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV 348 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I 348 (479)
...-.|+|+|. .+++..+. +.+.+.++..+. ... .....|..+.||| ||..|+... +|.|
T Consensus 399 ~t~PsWspDG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge--~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v 470 (591)
T PRK13616 399 LTRPSWSLDAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDASA--VAS---RVPGPISELQLSR-DGVRAAMII-GGKV 470 (591)
T ss_pred CCCceECCCCC-ceEEEecCcceEEEeccCCCceEEEEeccCch--hhh---ccCCCcCeEEECC-CCCEEEEEE-CCEE
Confidence 66778888873 34444322 233333444333 111 2356799999999 888877765 5777
Q ss_pred EEEecCCCCCCC--CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 349 RMFDRRNLTSNG--VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 349 ~iwd~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
++=-+....... ...+.....+-...+.++.|.+++. |+ .+..++...+|.+.-.
T Consensus 471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNLD 527 (591)
T ss_pred EEEEEEeCCCCceeecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEecC
Confidence 773322211100 0111111122334468899999998 44 4455555566776654
No 394
>PRK10115 protease 2; Provisional
Probab=95.20 E-value=4.9 Score=42.15 Aligned_cols=73 Identities=10% Similarity=0.016 Sum_probs=41.2
Q ss_pred EEEEEeeCCCcEEEEEecC-----CeEEEEeCCCCCCCceeeeccCCCCeE-EEEecCCCCcEEEEEeC---CCcEEEEe
Q 011709 282 EDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLH-CVDWNPLDDNLILTGSA---DNSVRMFD 352 (479)
Q Consensus 282 ~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~-~l~~sp~~~~~l~tgs~---dg~I~iwd 352 (479)
..++|.+++..++++...+ ..|..+++.++...-...+........ .+..+. ++.+++..+. ++.+.+++
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~ 253 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLD 253 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEE
Confidence 4589999986666665433 368888888873212223322222333 233333 5665554444 35789999
Q ss_pred cCC
Q 011709 353 RRN 355 (479)
Q Consensus 353 ~~~ 355 (479)
...
T Consensus 254 ~~~ 256 (686)
T PRK10115 254 AEL 256 (686)
T ss_pred CcC
Confidence 654
No 395
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.20 E-value=2.4 Score=38.67 Aligned_cols=117 Identities=5% Similarity=0.053 Sum_probs=68.9
Q ss_pred ceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceee------------eccCCCCeEEEE-ecCCCCcEEEEEeCCC
Q 011709 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV------------EKAHDADLHCVD-WNPLDDNLILTGSADN 346 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~~v~~l~-~sp~~~~~l~tgs~dg 346 (479)
.|..+...++- +.+++-+ |+.+.++++..-....... .......+...+ -....+...+.....+
T Consensus 37 ~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 37 SITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred eEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 49999998876 4444443 4999999998755221100 112233455555 1122444444555566
Q ss_pred cEEEEecCCCCCCCCC-CceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 347 SVRMFDRRNLTSNGVG-SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 347 ~I~iwd~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+|.+|........ . ..+.++.- ...+.+++|.++ .++.|.. ....+.|+.++
T Consensus 115 ~i~i~~~~~~~~~--f~~~~ke~~l-p~~~~~i~~~~~---~i~v~~~-~~f~~idl~~~ 167 (275)
T PF00780_consen 115 KILIYEWNDPRNS--FSKLLKEISL-PDPPSSIAFLGN---KICVGTS-KGFYLIDLNTG 167 (275)
T ss_pred EEEEEEEECCccc--ccceeEEEEc-CCCcEEEEEeCC---EEEEEeC-CceEEEecCCC
Confidence 9999988763211 2 35555553 367889999843 3445554 45888998863
No 396
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.10 E-value=2.6 Score=43.37 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=76.1
Q ss_pred ceEEEEEeeC-CCcEEEEEecCCeEEEEeCCC-------C----CC-------CceeeeccCCCCeEEEEec--CCCCcE
Q 011709 280 TVEDVTFCPS-SAQEFCSVGDDSCLILWDARV-------G----TS-------PVIKVEKAHDADLHCVDWN--PLDDNL 338 (479)
Q Consensus 280 ~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~-------~----~~-------~~~~~~~~~~~~v~~l~~s--p~~~~~ 338 (479)
.|+-|....- +..+|+.|.+||.|.+|.+.+ . .. .....+ .....+++++++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecC-cceE
Confidence 4566554432 335899999999999996521 0 00 011111 234578999998 6 7789
Q ss_pred EEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCC--C---cEEEEEeCCCCEEEEeC
Q 011709 339 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK--S---SVFGSSAEDGLLNIWDY 402 (479)
Q Consensus 339 l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~---~llas~s~Dg~v~iwd~ 402 (479)
||+++....|.||-....... .....-..|...|-+|.|-++. . ..+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r---~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDER---FYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccc---cccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999988888888866542211 1111111266678899998765 1 15667888999999988
No 397
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.09 E-value=0.082 Score=32.17 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.7
Q ss_pred CceeEEEecCCCC--cEEEEEeCCCcEEEEECCCC
Q 011709 141 GEVNRIRELPQNT--KIVATHTDSPDVLIWDVEAQ 173 (479)
Q Consensus 141 ~~V~~l~~~p~~~--~~lat~s~dg~i~iwd~~~~ 173 (479)
|+|.+++|+|..+ ++||.+-..|.|.|+|+.+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 5799999998666 79999988999999999864
No 398
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.84 E-value=0.66 Score=45.58 Aligned_cols=122 Identities=12% Similarity=0.255 Sum_probs=75.1
Q ss_pred CCCceEEEEEeeCC---CcEEEEEecCCeEEEEeCCCCC---CCceeeecc-C--CCC--eEEEEecCCCCcEEEEEeCC
Q 011709 277 HEDTVEDVTFCPSS---AQEFCSVGDDSCLILWDARVGT---SPVIKVEKA-H--DAD--LHCVDWNPLDDNLILTGSAD 345 (479)
Q Consensus 277 h~~~v~~l~~~~~~---~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~-~--~~~--v~~l~~sp~~~~~l~tgs~d 345 (479)
.-..|..+.|.|-+ .-.+++..-...|.+|-+--.. ...+..... . .-+ -..+.|+| ....|+.-...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~ 133 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTAR 133 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecC
Confidence 33468999999852 1135555667889999886221 111211111 1 111 23688999 67777666655
Q ss_pred CcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 346 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
..=-+++++... .+....+. ..+-|.|.+|.+||+++++..+..=.-+|||-..
T Consensus 134 dvSV~~sV~~d~----srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDS----SRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCC----ceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 544556666532 22333343 4678999999999999877777666778898543
No 399
>PHA02713 hypothetical protein; Provisional
Probab=94.68 E-value=1.1 Score=45.57 Aligned_cols=51 Identities=6% Similarity=0.036 Sum_probs=28.9
Q ss_pred cEEEEEecCC-----eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC
Q 011709 292 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345 (479)
Q Consensus 292 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d 345 (479)
.+++.|+.++ ++..||..+..+..+..+.........+.+ ++.+.+.||.+
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~ 408 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRT 408 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCC
Confidence 6777777654 488899988764322222111122222333 56777778765
No 400
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=3.2 Score=37.32 Aligned_cols=149 Identities=17% Similarity=0.103 Sum_probs=97.2
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~ 357 (479)
...+.++.++. .+...+..+.-++|.|+.+...|....+....+.-.++.. .|++...+..|.-+.+.|+..++
T Consensus 86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCC
Confidence 34567777764 3566677778899999999887655544344455556665 57899998877777889998865
Q ss_pred CCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC-CceeEE
Q 011709 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS-PSSSIK 436 (479)
Q Consensus 358 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~-~~~~~~ 436 (479)
+ ......+......-..++.|-+ +-+ .+..|+-+.|-|++.+.. |. +..+.... .+.++.
T Consensus 160 s---P~lagrya~~~~d~~~v~ISGn--~AY-vA~~d~GL~ivDVSnp~s------------Pv-li~~~n~g~g~~sv~ 220 (370)
T COG5276 160 S---PQLAGRYALPGGDTHDVAISGN--YAY-VAWRDGGLTIVDVSNPHS------------PV-LIGSYNTGPGTYSVS 220 (370)
T ss_pred C---ceeeeeeccCCCCceeEEEecC--eEE-EEEeCCCeEEEEccCCCC------------Ce-EEEEEecCCceEEEE
Confidence 3 2223334444444456777644 333 455788899999998522 22 22332223 367888
Q ss_pred EecCCCeeeecCCCc
Q 011709 437 FVLRESCLVDNNHGL 451 (479)
Q Consensus 437 ~sp~~~~l~~~~~~~ 451 (479)
.+++.-+++..+.++
T Consensus 221 vsdnr~y~vvy~egv 235 (370)
T COG5276 221 VSDNRAYLVVYDEGV 235 (370)
T ss_pred ecCCeeEEEEcccce
Confidence 888888888877764
No 401
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.60 E-value=3.5 Score=37.59 Aligned_cols=156 Identities=11% Similarity=0.104 Sum_probs=85.9
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccc
Q 011709 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (479)
Q Consensus 152 ~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~ 231 (479)
.++.|+.|+++| +++++..... ... ...... .|..+...++-+.|++-+ |+.+.++++......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~-----------~~~-~i~~~~--~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPS-----------KPT-RILKLS--SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPV 69 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCc-----------cce-eEeecc--eEEEEEEecccCEEEEEc-CCccEEEEchhhccc
Confidence 566889999998 9999993221 111 111111 288899988877666665 699999999764332
Q ss_pred cccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEE--EeeCCCcEEEEEecCCeEEEEeCC
Q 011709 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT--FCPSSAQEFCSVGDDSCLILWDAR 309 (479)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~~~~~~~l~s~~~dg~i~iwd~~ 309 (479)
....+.. . ...............+..++ -...+ ...+.+.....|.+|...
T Consensus 70 ~~~~~~~--~------------------------~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~ 122 (275)
T PF00780_consen 70 STSAPLA--F------------------------PKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWN 122 (275)
T ss_pred ccccccc--c------------------------cccccccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEE
Confidence 1110000 0 00000000011222344444 11233 233344444588888887
Q ss_pred CCC--C-CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 310 VGT--S-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 310 ~~~--~-~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
... . ...+.+ .-...+.+++|.+ +.|+.|..+ ...+.|+.+
T Consensus 123 ~~~~~f~~~~ke~-~lp~~~~~i~~~~---~~i~v~~~~-~f~~idl~~ 166 (275)
T PF00780_consen 123 DPRNSFSKLLKEI-SLPDPPSSIAFLG---NKICVGTSK-GFYLIDLNT 166 (275)
T ss_pred CCcccccceeEEE-EcCCCcEEEEEeC---CEEEEEeCC-ceEEEecCC
Confidence 642 1 123333 4567889999974 677777654 478889986
No 402
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.36 E-value=5.6 Score=38.96 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=37.3
Q ss_pred CCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCcee----eec-cCCCCeEEEEecC
Q 011709 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK----VEK-AHDADLHCVDWNP 333 (479)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~-~~~~~v~~l~~sp 333 (479)
.-..-..|+|.|++ .+|++--..|.|++++..+.....+. ... ........|+++|
T Consensus 28 GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 28 GLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred CCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 34557899999998 66666555699999986654321111 111 1367789999998
No 403
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.32 E-value=5.2 Score=38.41 Aligned_cols=169 Identities=14% Similarity=0.101 Sum_probs=77.4
Q ss_pred eeCCCcEEEEEec------CCeEEEEeCCCCCCCceeeecc---CCCCeEEEEecCCCCcEEEEEe--------------
Q 011709 287 CPSSAQEFCSVGD------DSCLILWDARVGTSPVIKVEKA---HDADLHCVDWNPLDDNLILTGS-------------- 343 (479)
Q Consensus 287 ~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~l~tgs-------------- 343 (479)
-|+| .+++|+-. -|-+.+.|-.+.. +...... ....-..+-|.| ..+.++|..
T Consensus 138 lp~G-~imIS~lGd~~G~g~Ggf~llD~~tf~--v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 138 LPDG-RIMISALGDADGNGPGGFVLLDGETFE--VKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp -SS---EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TT
T ss_pred cCCc-cEEEEeccCCCCCCCCcEEEEcCcccc--ccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChh
Confidence 3566 56666432 2467778877655 3333322 123345677777 666666643
Q ss_pred ------CCCcEEEEecCCCCCCCCCCceeeecCCCC--cEEEEEEe--cCCCcEEEEEeCCCCEEEEeCCCCCccccC--
Q 011709 344 ------ADNSVRMFDRRNLTSNGVGSPINKFEGHSA--AVLCVQWS--PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ-- 411 (479)
Q Consensus 344 ------~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~--p~~~~llas~s~Dg~v~iwd~~~~~~~~~~-- 411 (479)
...++++||+.. .++++++.--.. .+.-|.|. |+..+=|+.+...++|..|--...+.-...
T Consensus 214 d~~~~~yG~~l~vWD~~~------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kV 287 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWST------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKV 287 (461)
T ss_dssp THHHH-S--EEEEEETTT------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEE
T ss_pred HhhcccccCeEEEEECCC------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEE
Confidence 235799999998 778888865432 34455554 555555655555555655544222221110
Q ss_pred --CCCC---CCCCCeeEEEeCC--CCCceeEEEecCCCeeeecCCCccccceeEEEEeecccccce
Q 011709 412 --GPRT---TNYPAGLFFQHAG--HSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEALKSF 470 (479)
Q Consensus 412 --~~~~---~~~~~~l~~~~~g--h~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~~~~ 470 (479)
.... ...-|+++- ..+ ..-++++..|.|+++|..+... +|.|+.|++..-.++-
T Consensus 288 i~ip~~~v~~~~lp~ml~-~~~~~P~LitDI~iSlDDrfLYvs~W~----~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 288 IDIPAKKVEGWILPEMLK-PFGAVPPLITDILISLDDRFLYVSNWL----HGDVRQYDISDPFNPK 348 (461)
T ss_dssp EEE--EE--SS---GGGG-GG-EE------EEE-TTS-EEEEEETT----TTEEEEEE-SSTTS-E
T ss_pred EECCCcccCccccccccc-ccccCCCceEeEEEccCCCEEEEEccc----CCcEEEEecCCCCCCc
Confidence 0000 000000000 000 0126999999999999999888 9999999988766553
No 404
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.27 E-value=6.6 Score=39.38 Aligned_cols=96 Identities=13% Similarity=0.213 Sum_probs=56.4
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEE------------------eCCCcEEEEecC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG------------------SADNSVRMFDRR 354 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tg------------------s~dg~I~iwd~~ 354 (479)
.++.++.+|.+...|.++++ .+...... ...++.+| ..++.+ ..+|.|.-.|+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~--~~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGK--LISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred EEEEECCCceEEEEECCCCc--EeeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 57778899999999999998 33332111 11233333 223322 235778888887
Q ss_pred CCCCCCCCCceeeecCCC--------CcE--EEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 355 NLTSNGVGSPINKFEGHS--------AAV--LCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~--------~~v--~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+ ++.+-+..... .+. ..+.. .+. ++..++.||.|+.+|..++
T Consensus 375 t------G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~-~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 375 T------GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGN-LVFAGAADGYFRAFDATTG 426 (488)
T ss_pred C------CcEeeEeeCCccccccccCCcccCcceEe--cCC-eEEEECCCCeEEEEECCCC
Confidence 7 56555544220 111 11222 334 4557788999999999884
No 405
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.16 E-value=0.0068 Score=57.30 Aligned_cols=142 Identities=8% Similarity=0.121 Sum_probs=101.3
Q ss_pred eeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCc
Q 011709 201 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT 280 (479)
Q Consensus 201 ~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 280 (479)
...|-+.+.-|+.+..+..+..||-....... ...++.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le------------------------------------------~n~tg~ 76 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILE------------------------------------------LNPTGK 76 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceecc------------------------------------------cCCchh
Confidence 66788887778888888888888865422110 012345
Q ss_pred eEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 011709 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~ 360 (479)
..+++|..+++..++.+-..+.+.+||+.+.....+..--.|.... +.|++ ....++.|...|.+.|++.+.
T Consensus 77 aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgt----- 148 (615)
T KOG2247|consen 77 ALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGT----- 148 (615)
T ss_pred HhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccc-----
Confidence 6678888888777888888999999999886622122111222222 78999 888899999999999999987
Q ss_pred CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCC
Q 011709 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 395 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg 395 (479)
.+.+...-.|...+++++|.+.+.. +.++.|.
T Consensus 149 -sR~iiv~Gkh~RRgtq~av~lEd~v--il~dcd~ 180 (615)
T KOG2247|consen 149 -SRRIIVMGKHQRRGTQIAVTLEDYV--ILCDCDN 180 (615)
T ss_pred -hhhhhhhcccccceeEEEeccccee--eecCcHH
Confidence 4555555569999999999998763 3555443
No 406
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.08 E-value=0.043 Score=55.92 Aligned_cols=125 Identities=22% Similarity=0.329 Sum_probs=78.6
Q ss_pred eeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCC--CCC---CceeeeccCCCCeEEEEecCC--CCcEEEEEeC
Q 011709 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV--GTS---PVIKVEKAHDADLHCVDWNPL--DDNLILTGSA 344 (479)
Q Consensus 272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~---~~~~~~~~~~~~v~~l~~sp~--~~~~l~tgs~ 344 (479)
..+++..+.|.++.|....--.+. -.-|.+.+||+.. ++. -.+.........+.-|.|.|. +.-++..+-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 345677888888888543211122 3446788898764 221 122233334455566777763 3456777777
Q ss_pred CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEE-----------EecCCCcEEEEEeCCCCEEEEeCCCCC
Q 011709 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ-----------WSPDKSSVFGSSAEDGLLNIWDYEKVG 406 (479)
Q Consensus 345 dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~-----------~~p~~~~llas~s~Dg~v~iwd~~~~~ 406 (479)
++.|++..+.. ....-+.+|...++.++ .+|||. +||.+..||.++.|.+.-.|
T Consensus 204 ~~~i~lL~~~r-------a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 204 GGEIRLLNINR-------ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred CCceeEeeech-------HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeec
Confidence 89999888765 22244556776655543 578888 68888889998888876544
No 407
>PHA02790 Kelch-like protein; Provisional
Probab=93.99 E-value=2.5 Score=42.28 Aligned_cols=100 Identities=7% Similarity=-0.038 Sum_probs=51.6
Q ss_pred cEEEEEecCC---eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee
Q 011709 292 QEFCSVGDDS---CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 292 ~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
.+++.|+.++ .+..||.++..+.....+.........+.+ ++.+.+.|+ .+.+||.++.. ...+..+
T Consensus 364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~----W~~~~~m 433 (480)
T PHA02790 364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESSNT----WTLIDDP 433 (480)
T ss_pred EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCCCCc----EeEcCCC
Confidence 6777777553 477899888764322222111112222333 566667664 57788887522 3333333
Q ss_pred cCCCCcEEEEEEecCCCcEEEEEeCC-----CCEEEEeCCC
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~s~D-----g~v~iwd~~~ 404 (479)
.........+.+ ++. |++.||.+ ..|..||..+
T Consensus 434 ~~~r~~~~~~v~--~~~-IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 434 IYPRDNPELIIV--DNK-LLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCCccccEEEEE--CCE-EEEECCcCCCcccceEEEEECCC
Confidence 222222222222 344 78888865 3466777665
No 408
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.86 E-value=5.5 Score=37.03 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=60.9
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeecc----------CCCCeEEEEecCCCCcEEEEEe--CCC-------cEEEEecC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLDDNLILTGS--ADN-------SVRMFDRR 354 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~l~~sp~~~~~l~tgs--~dg-------~I~iwd~~ 354 (479)
++-.+..|.|+--|+............. -.+.-.-+++++..+++++.-. .+| .|.++|+.
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 3335677777777776554111111100 1123345777773333333211 122 48888888
Q ss_pred CCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEE-EeCCCCEEEEeCCCC
Q 011709 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKV 405 (479)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas-~s~Dg~v~iwd~~~~ 405 (479)
+ ++.+..+.. ..++.+|+.+.+..-+|.+ ...++.+.|||..++
T Consensus 278 t------~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 278 T------HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp T------TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred C------CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 7 778887774 3468899999987655544 455899999999984
No 409
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.82 E-value=0.22 Score=30.33 Aligned_cols=32 Identities=25% Similarity=0.511 Sum_probs=26.8
Q ss_pred CcEEEEEEecCCC--cEEEEEeCCCCEEEEeCCC
Q 011709 373 AAVLCVQWSPDKS--SVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 373 ~~v~~l~~~p~~~--~llas~s~Dg~v~iwd~~~ 404 (479)
++|.++.|+|... -+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998654 5788888889999999995
No 410
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.69 E-value=8.9 Score=38.81 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=18.7
Q ss_pred cEEEEEecCCeEEEEeCCCCC
Q 011709 292 QEFCSVGDDSCLILWDARVGT 312 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~ 312 (479)
..++.+..+|.+.+.|-++++
T Consensus 316 ~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 316 KLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEEEEeCCCceEEEEECCCCc
Confidence 378889999999999999987
No 411
>PHA03098 kelch-like protein; Provisional
Probab=93.64 E-value=5.1 Score=40.72 Aligned_cols=103 Identities=10% Similarity=0.057 Sum_probs=51.7
Q ss_pred cEEEEEecC-----CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC------CcEEEEecCCCCCCC
Q 011709 292 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRMFDRRNLTSNG 360 (479)
Q Consensus 292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d------g~I~iwd~~~~~~~~ 360 (479)
.+++.|+.+ ..+..||..+.++.....+....... +++.. ++.+.+.||.+ ..+..||..+..
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--- 417 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK--- 417 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe---
Confidence 677777765 35778998887643222221111111 22222 56777777732 358889987522
Q ss_pred CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCC--------CEEEEeCCC
Q 011709 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--------LLNIWDYEK 404 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg--------~v~iwd~~~ 404 (479)
...+..+....... ++.. -++ .+++.||.+. .+.+||..+
T Consensus 418 -W~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 418 -WSKGSPLPISHYGG-CAIY-HDG-KIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred -eeecCCCCccccCc-eEEE-ECC-EEEEECCccCCCCCcccceEEEecCCC
Confidence 22222221111111 2222 233 3777777532 278888876
No 412
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.61 E-value=1.6 Score=40.45 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=40.8
Q ss_pred eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCceeeecC
Q 011709 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFEG 370 (479)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~ 370 (479)
.|-++|+.+++ .+..+. -...+.+|+.+..+..+|++.+ .++.+.+||..+ ++.+.++..
T Consensus 270 eVWv~D~~t~k--rv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t------Gk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTHK--RVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT------GKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTE--EEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--------EEEEE--
T ss_pred EEEEEECCCCe--EEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC------CcEEeehhc
Confidence 57778888877 455543 2345779999985555776654 579999999999 788887764
No 413
>PRK10115 protease 2; Provisional
Probab=93.56 E-value=11 Score=39.54 Aligned_cols=149 Identities=12% Similarity=0.071 Sum_probs=72.0
Q ss_pred CceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeec-cCCCCeEEEEec--CCCCcEEEEEeCC---CcEEEEe
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWN--PLDDNLILTGSAD---NSVRMFD 352 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~s--p~~~~~l~tgs~d---g~I~iwd 352 (479)
..|..+.+. +..++++...+|.-+++-+..... ....+. .....+..+.++ +.++.++++.++- +.+..+|
T Consensus 316 ~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d 392 (686)
T PRK10115 316 IMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELD 392 (686)
T ss_pred CEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEE
Confidence 368888887 336777888888765554432111 122222 222233334444 3224455554443 5788888
Q ss_pred cCCCCCCCCCCceeeecCCC-CcEEEEEEecCCCcEEEEEeCCC-CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC
Q 011709 353 RRNLTSNGVGSPINKFEGHS-AAVLCVQWSPDKSSVFGSSAEDG-LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS 430 (479)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~llas~s~Dg-~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~ 430 (479)
+.+ ++ ...+.... .....-.+.+ +.+.+.+ .|| .|-+|=+...... .....|.+++.|+|..
T Consensus 393 ~~~------~~-~~~l~~~~~~~~~~~~~~~--e~v~~~s-~DG~~Ip~~l~~~~~~~------~~~~~P~ll~~hGg~~ 456 (686)
T PRK10115 393 MDT------GE-RRVLKQTEVPGFDAANYRS--EHLWITA-RDGVEVPVSLVYHRKHF------RKGHNPLLVYGYGSYG 456 (686)
T ss_pred CCC------Cc-EEEEEecCCCCcCccccEE--EEEEEEC-CCCCEEEEEEEEECCCC------CCCCCCEEEEEECCCC
Confidence 876 22 22222111 1111111211 1133333 444 4555444321110 0124478899999988
Q ss_pred CceeEEEecCCCeeee
Q 011709 431 PSSSIKFVLRESCLVD 446 (479)
Q Consensus 431 ~~~~~~~sp~~~~l~~ 446 (479)
......|++.-..++.
T Consensus 457 ~~~~p~f~~~~~~l~~ 472 (686)
T PRK10115 457 ASIDADFSFSRLSLLD 472 (686)
T ss_pred CCCCCCccHHHHHHHH
Confidence 8777778775444433
No 414
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=1.5 Score=46.62 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=92.4
Q ss_pred ceEEEEEeeCCCc-EEEEEecCCeEEEEeCCCCCCCc---eeeec------cCCCCeEEEEecCCCCcEEEEEeCCCcEE
Q 011709 280 TVEDVTFCPSSAQ-EFCSVGDDSCLILWDARVGTSPV---IKVEK------AHDADLHCVDWNPLDDNLILTGSADNSVR 349 (479)
Q Consensus 280 ~v~~l~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~---~~~~~------~~~~~v~~l~~sp~~~~~l~tgs~dg~I~ 349 (479)
.+..+...+++.. .++..+++-.|..||+++-.... ...+. ....-..++.|+|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555555666422 23334455579999998754211 11111 12234568899996566778888899999
Q ss_pred EEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC
Q 011709 350 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 429 (479)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh 429 (479)
+.-+.... ..+..+. -...+++++|+|.|.. ++.|-..|++.-|...-.-..... .||-.- .
T Consensus 182 V~~~~~~~-----~~v~s~p-~t~~~Tav~WSprGKQ-l~iG~nnGt~vQy~P~leik~~ip------~Pp~~e-----~ 243 (1405)
T KOG3630|consen 182 VKSTKQLA-----QNVTSFP-VTNSQTAVLWSPRGKQ-LFIGRNNGTEVQYEPSLEIKSEIP------EPPVEE-----N 243 (1405)
T ss_pred hhhhhhhh-----hhhcccC-cccceeeEEeccccce-eeEecCCCeEEEeecccceeeccc------CCCcCC-----C
Confidence 98887532 2233322 4567899999999996 568888999988876542111111 111111 2
Q ss_pred CCceeEEEecCCCeeeecCCC
Q 011709 430 SPSSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 430 ~~~~~~~~sp~~~~l~~~~~~ 450 (479)
-.|.+++|-....+++.-+..
T Consensus 244 yrvl~v~Wl~t~eflvvy~n~ 264 (1405)
T KOG3630|consen 244 YRVLSVTWLSTQEFLVVYGNV 264 (1405)
T ss_pred cceeEEEEecceeEEEEeccc
Confidence 347899998777776665543
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.16 E-value=2.3 Score=43.68 Aligned_cols=175 Identities=11% Similarity=0.095 Sum_probs=95.0
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCcccc------CC-CC-CCCCcEEE----eccCCCceeeeeecC--CCCcEEEecCCC
Q 011709 153 TKIVATHTDSPDVLIWDVEAQPNRHAV------LG-AT-NSRPDLIL----TGHQDNAEFALAMCP--TEPYVLSGGKDK 218 (479)
Q Consensus 153 ~~~lat~s~dg~i~iwd~~~~~~~~~~------~~-~~-~~~~~~~~----~~h~~~~v~~l~~s~--~~~~l~s~s~dg 218 (479)
.++|+.|. .+.|+||+.......... .. .. ........ ..|+ |+-|.... ....|+.|..||
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHt---IN~i~v~~lg~~EVLl~c~DdG 124 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHT---INFIKVGDLGGEEVLLLCTDDG 124 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCce---eeEEEecccCCeeEEEEEecCC
Confidence 55676765 569999998765432210 00 00 00000000 1222 44444433 345889999999
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe--eCCCcEEEE
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC--PSSAQEFCS 296 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~~l~s 296 (479)
.|.+|.+++-........... .. .......+|...+. -...+.+++++ ... +++|+
T Consensus 125 ~V~~Yyt~~I~~~i~~~~~~~-----------------~~---~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rlIAV 182 (717)
T PF08728_consen 125 DVLAYYTETIIEAIERFSEDN-----------------DS---GFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RLIAV 182 (717)
T ss_pred eEEEEEHHHHHHHHHhhcccc-----------------cc---ccccccCCCCeEee-cCCceeEEEEEecCcc-eEEEE
Confidence 999998754221100000000 00 00001222323333 33478999998 555 77888
Q ss_pred EecCCeEEEEeCCCCCCC-ceeeeccCCCCeEEEEecCCC--Cc---EEEEEeCCCcEEEEec
Q 011709 297 VGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLD--DN---LILTGSADNSVRMFDR 353 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~l~~sp~~--~~---~l~tgs~dg~I~iwd~ 353 (479)
++....|.||-....... .......|...|-+|+|-+.+ +. .+++++-.|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888765542211 111122466778999997733 22 7888999999999988
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.04 E-value=8.7 Score=36.85 Aligned_cols=62 Identities=10% Similarity=0.194 Sum_probs=36.9
Q ss_pred CceEEEEEeeCCCcEEEEEec-------------------CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEE
Q 011709 279 DTVEDVTFCPSSAQEFCSVGD-------------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI 339 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l 339 (479)
...+.++|.|+| .++++.+. .|.|..+|...+. ...+...-...+.++|+| .+.++
T Consensus 124 ~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~---~e~~a~G~rnp~Gl~~d~-~G~l~ 198 (367)
T TIGR02604 124 HSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK---LRVVAHGFQNPYGHSVDS-WGDVF 198 (367)
T ss_pred ccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe---EEEEecCcCCCccceECC-CCCEE
Confidence 457788999988 45554331 1445555655544 222222234457899999 88887
Q ss_pred EEEeCC
Q 011709 340 LTGSAD 345 (479)
Q Consensus 340 ~tgs~d 345 (479)
++-..+
T Consensus 199 ~tdn~~ 204 (367)
T TIGR02604 199 FCDNDD 204 (367)
T ss_pred EEccCC
Confidence 765544
No 417
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.78 E-value=3.2 Score=35.69 Aligned_cols=106 Identities=13% Similarity=0.273 Sum_probs=67.3
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC---C---cEEEE-ecCCCCCCCCCCce
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---N---SVRMF-DRRNLTSNGVGSPI 365 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d---g---~I~iw-d~~~~~~~~~~~~~ 365 (479)
.|+.+...+.|.+||+.+...+....+. .-+.|..+.++. .|+||+|-=.+ . .+|+| +.|..... ..++
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~--~~~v 105 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE--NSPV 105 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhccc--CCcE
Confidence 3444466678999999966666666664 448899999999 89999985432 2 56664 33322110 1111
Q ss_pred e-eecC---------------------CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 366 N-KFEG---------------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 366 ~-~~~~---------------------h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
. .+-| -..++.+++..|-...|+ .|+ ++++.||.+..
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKY 164 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEE
Confidence 1 1111 134678888888766655 555 66899999876
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.76 E-value=15 Score=38.64 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=55.0
Q ss_pred ceeeeeecCCCCcEEEecCCCcEEEEecCCCcc-ccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC
Q 011709 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT-SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 276 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (479)
.|..+..+|+|.+|+..|..| |.|..+...-. ...+.. +...+.+. .... ........
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~-------g~~~i~Cr------------t~~v-~~~~~~~~ 144 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFED-------GKKEINCR------------TVPV-DERFFTSN 144 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccC-------CCcceeEE------------EEEe-chhhccCC
Confidence 588899999999998888655 55555532100 000000 00000000 0000 00011223
Q ss_pred CCCceEEEEEeeCC--CcEEEEEecCCeEEEEeCCCCCC
Q 011709 277 HEDTVEDVTFCPSS--AQEFCSVGDDSCLILWDARVGTS 313 (479)
Q Consensus 277 h~~~v~~l~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~ 313 (479)
+...|..+.|||.+ +..|+.-..|+++|+||+.....
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence 45679999999974 36788889999999999986553
No 419
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.62 E-value=2.1 Score=40.42 Aligned_cols=161 Identities=12% Similarity=0.125 Sum_probs=74.9
Q ss_pred ceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCC-Cceee----eccCCCCeEEEEecCC---CCcEEEEEeCC------
Q 011709 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKV----EKAHDADLHCVDWNPL---DDNLILTGSAD------ 345 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~----~~~~~~~v~~l~~sp~---~~~~l~tgs~d------ 345 (479)
...+|+|.|++ .+|++ ...|.|++++ ..+.. ..+.. ..........++++|. ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG-~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTS-CEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCC-cEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 35789999998 55554 5699999999 33331 11211 2244567899999992 13333333321
Q ss_pred C--cEEEEecCCCCCC-CCCC-ceeeecC---CCCcEEEEEEecCCCcEEEEEeCCCC-----------EEEEeCCCCCc
Q 011709 346 N--SVRMFDRRNLTSN-GVGS-PINKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGL-----------LNIWDYEKVGK 407 (479)
Q Consensus 346 g--~I~iwd~~~~~~~-~~~~-~~~~~~~---h~~~v~~l~~~p~~~~llas~s~Dg~-----------v~iwd~~~~~~ 407 (479)
. .|.-|........ ...+ .+..+.. ....-..|+|.|++. |+++.+..+. =+|+.+...+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~ 158 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS 158 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCcccccccccccceEEEecccCc
Confidence 1 3333333321000 0001 1112222 233456799999995 6666665432 12222222222
Q ss_pred cccCCCCCC-CCCCeeEEEeCCCCCceeEEEecC-CCeee
Q 011709 408 KVEQGPRTT-NYPAGLFFQHAGHSPSSSIKFVLR-ESCLV 445 (479)
Q Consensus 408 ~~~~~~~~~-~~~~~l~~~~~gh~~~~~~~~sp~-~~~l~ 445 (479)
......... .....-+ -..|++....++|+|. +...+
T Consensus 159 ~p~dnP~~~~~~~~~~i-~A~GlRN~~~~~~d~~tg~l~~ 197 (331)
T PF07995_consen 159 IPADNPFVGDDGADSEI-YAYGLRNPFGLAFDPNTGRLWA 197 (331)
T ss_dssp B-TTSTTTTSTTSTTTE-EEE--SEEEEEEEETTTTEEEE
T ss_pred CCCCCccccCCCceEEE-EEeCCCccccEEEECCCCcEEE
Confidence 111111000 0011122 3567888999999998 54443
No 420
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.62 E-value=8.4 Score=35.58 Aligned_cols=158 Identities=12% Similarity=0.121 Sum_probs=73.4
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
.-.+.++.+..++ ++.++|+++.-....-||-... .-...-+. ....|..|.|.|++...+.+ ..
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~------------~w~~~~r~-~~~riq~~gf~~~~~lw~~~-~G 206 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQT------------TWQPHNRN-SSRRIQSMGFSPDGNLWMLA-RG 206 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-S------------S-EEEE---SSS-EEEEEE-TTS-EEEEE-TT
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCc------------cceEEccC-ccceehhceecCCCCEEEEe-CC
Confidence 3347788888787 8888888765444456765432 11111112 22458999999998765544 78
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
|.|+.=+.......-.. ++..+....-.+.+++|.+++ .++++|
T Consensus 207 g~~~~s~~~~~~~~w~~-----------------------------------~~~~~~~~~~~~ld~a~~~~~-~~wa~g 250 (302)
T PF14870_consen 207 GQIQFSDDPDDGETWSE-----------------------------------PIIPIKTNGYGILDLAYRPPN-EIWAVG 250 (302)
T ss_dssp TEEEEEE-TTEEEEE--------------------------------------B-TTSS--S-EEEEEESSSS--EEEEE
T ss_pred cEEEEccCCCCcccccc-----------------------------------ccCCcccCceeeEEEEecCCC-CEEEEe
Confidence 88888762211000000 000111122348899999887 555555
Q ss_pred ecCCeEEEEeCCCCCCCceee--eccCCCCeEEEEecCCCCcEEEEEeCCCcEEEE
Q 011709 298 GDDSCLILWDARVGTSPVIKV--EKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 351 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iw 351 (479)
+ .|.+. .....++. -.+. ...-...++.|.|.+ ...-++. +.+|.|.-|
T Consensus 251 g-~G~l~-~S~DgGkt-W~~~~~~~~~~~n~~~i~f~~-~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 251 G-SGTLL-VSTDGGKT-WQKDRVGENVPSNLYRIVFVN-PDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp S-TT-EE-EESSTTSS--EE-GGGTTSSS---EEEEEE-TTEEEEE--STTEEEEE
T ss_pred C-CccEE-EeCCCCcc-ceECccccCCCCceEEEEEcC-CCceEEE-CCCcEEEEe
Confidence 4 45443 34444441 1122 123356688999976 4444444 467776554
No 421
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.82 E-value=3.2 Score=42.20 Aligned_cols=110 Identities=16% Similarity=0.267 Sum_probs=63.5
Q ss_pred EEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeec--CCCCcEEEecCCCcEEEEecCCCcccc
Q 011709 155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC--PTEPYVLSGGKDKSVVLWSIQDHITSS 232 (479)
Q Consensus 155 ~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s--~~~~~l~s~s~dg~i~vwd~~~~~~~~ 232 (479)
..++-+...++.|||...+.. .....+.. . ..|..++|. |+|+.+++.|....|.++--.......
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~l----------E~~~~f~~-~-~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVL----------EYEESFSE-D-DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEE----------EEeeeecC-C-CceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 333344445899999988721 11122322 2 358899996 568888888889999998653211100
Q ss_pred ccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCcee--ecCCC-CceEEEEEeeCCCcEEEEEecCCeEEEEeCC
Q 011709 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI--YNGHE-DTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 309 (479)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 309 (479)
..+...++.. +..|+ .+|.+..|.++| . ++.|+ +..+.|+|-.
T Consensus 111 -------------------------------~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~-LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 111 -------------------------------KGPSWAPIRKIDISSHTPHPIGDSIWLKDG-T-LVVGS-GNQLFVFDKW 156 (631)
T ss_pred -------------------------------CCcccceeEEEEeecCCCCCccceeEecCC-e-EEEEe-CCEEEEECCC
Confidence 0011112221 23344 579999999998 3 44433 3568888754
Q ss_pred C
Q 011709 310 V 310 (479)
Q Consensus 310 ~ 310 (479)
-
T Consensus 157 ~ 157 (631)
T PF12234_consen 157 L 157 (631)
T ss_pred c
Confidence 3
No 422
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.81 E-value=8.2 Score=33.63 Aligned_cols=56 Identities=7% Similarity=0.099 Sum_probs=41.1
Q ss_pred EEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEE
Q 011709 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG 342 (479)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tg 342 (479)
++...+| ++++++-..|+|...|..+++ .+..+.-....|+|++|--.+-..|++.
T Consensus 217 m~ID~eG-~L~Va~~ng~~V~~~dp~tGK--~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 217 MTIDTEG-NLYVATFNGGTVQKVDPTTGK--ILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred ceEccCC-cEEEEEecCcEEEEECCCCCc--EEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 3344566 788888888999999999999 6666666788999999964232344433
No 423
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.45 E-value=12 Score=34.68 Aligned_cols=153 Identities=16% Similarity=0.253 Sum_probs=72.7
Q ss_pred CCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
.-...+.++.-+++| .++++++....+.-||--.... ..........|.+|.|+| ++.+.+++ ..|.|+.=+...
T Consensus 142 ~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w--~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 142 ETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTW--QPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TT
T ss_pred CCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccc--eEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCC
Confidence 345678888888988 6676666655667788654442 222234568899999999 77766654 888888877211
Q ss_pred -CCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCcee
Q 011709 356 -LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSS 434 (479)
Q Consensus 356 -~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~ 434 (479)
.+.- .+++..+..-.-.+..++|.+++. ++|+|+ .|.+ +..... |+.-......... ......
T Consensus 217 ~~~~w--~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~Dg-GktW~~~~~~~~~----------~~n~~~ 280 (302)
T PF14870_consen 217 DGETW--SEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDG-GKTWQKDRVGENV----------PSNLYR 280 (302)
T ss_dssp EEEEE-----B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESST-TSS-EE-GGGTTS----------SS---E
T ss_pred Ccccc--ccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCC-CccceECccccCC----------CCceEE
Confidence 0000 011111222333588999999877 676666 4443 233333 2211111110001 123567
Q ss_pred EEEecCCCeeeecCC
Q 011709 435 IKFVLRESCLVDNNH 449 (479)
Q Consensus 435 ~~~sp~~~~l~~~~~ 449 (479)
+.|.+..+-++.|.+
T Consensus 281 i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 281 IVFVNPDKGFVLGQD 295 (302)
T ss_dssp EEEEETTEEEEE-ST
T ss_pred EEEcCCCceEEECCC
Confidence 888766666666655
No 424
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.77 E-value=3.2 Score=34.92 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=25.7
Q ss_pred CceEEEEEeeCC-----CcEEEEEecCCeEEEEeCCC
Q 011709 279 DTVEDVTFCPSS-----AQEFCSVGDDSCLILWDARV 310 (479)
Q Consensus 279 ~~v~~l~~~~~~-----~~~l~s~~~dg~i~iwd~~~ 310 (479)
..|.+++|+|.| .-+|++.+.+|.|.+|.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999954 34788899999999997653
No 425
>PHA02790 Kelch-like protein; Provisional
Probab=90.70 E-value=20 Score=35.94 Aligned_cols=100 Identities=4% Similarity=-0.068 Sum_probs=50.5
Q ss_pred cEEEEEecC--CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC---cEEEEecCCCCCCCCCCcee
Q 011709 292 QEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 292 ~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg---~I~iwd~~~~~~~~~~~~~~ 366 (479)
.+++.|+.+ ..+..||..++++..+..+.........+.. ++.+.+.||.++ .+..||.++.. ...+.
T Consensus 320 ~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~----W~~~~ 392 (480)
T PHA02790 320 KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQ----WQFGP 392 (480)
T ss_pred EEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCE----EEeCC
Confidence 677777754 3588899877653222222111112222333 677778887654 46788876521 22222
Q ss_pred eecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 367 ~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.+.........+.+ ++ .|++.|+ .+.+||..+
T Consensus 393 ~m~~~r~~~~~~~~--~~-~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 393 STYYPHYKSCALVF--GR-RLFLVGR---NAEFYCESS 424 (480)
T ss_pred CCCCccccceEEEE--CC-EEEEECC---ceEEecCCC
Confidence 22111111112222 33 3776764 577888765
No 426
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.51 E-value=1.7 Score=38.13 Aligned_cols=68 Identities=6% Similarity=0.062 Sum_probs=47.4
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCCCCCCCceee-ec-------CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 335 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~-~~-------~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.+.++++-+.+|.+++||+.+.........+.. +. .....|..+.++.+|. .+++-+ +|....||...
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEEEecccc
Confidence 678899999999999999998432111111111 11 3556889999998887 455555 68899999876
No 427
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.44 E-value=9.3 Score=40.04 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=53.4
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC-CccccCCCCCCCCCC------eeEEEeCCCCCceeEEEecC---CC
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV-GKKVEQGPRTTNYPA------GLFFQHAGHSPSSSIKFVLR---ES 442 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~-~~~~~~~~~~~~~~~------~l~~~~~gh~~~~~~~~sp~---~~ 442 (479)
-.|..|.++|+|.+ +|-.|.. .|.|-.+... |..-...+....... +.+|.......+..+.|+|. +.
T Consensus 85 f~v~~i~~n~~g~~-lal~G~~-~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSL-LALVGPR-GVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCE-EEEEcCC-cEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 46889999999995 5566654 4667666541 211111111110111 11222222233889999997 47
Q ss_pred eeeecCCCccccceeEEEEeeccccccee
Q 011709 443 CLVDNNHGLSYANKKIKIYCHLEALKSFQ 471 (479)
Q Consensus 443 ~l~~~~~~~~~~d~~i~i~~~~~~~~~~~ 471 (479)
+|+.=.. |+.+|+|+......+.+
T Consensus 163 ~l~vLts-----dn~lR~y~~~~~~~p~~ 186 (717)
T PF10168_consen 163 HLVVLTS-----DNTLRLYDISDPQHPWQ 186 (717)
T ss_pred eEEEEec-----CCEEEEEecCCCCCCeE
Confidence 7777666 88999999876554433
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.43 E-value=22 Score=36.64 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=42.5
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
|.+-++..+|..-.-++ +.-..|+||++.... ....+-.|. . +-++.|+.+. .|++...||++
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~l------------L~~~~w~~~-~-lI~mgWs~~e-eLI~v~k~g~v 106 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNISGQL------------LGRILWKHG-E-LIGMGWSDDE-ELICVQKDGTV 106 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEeccccc------------hHHHHhcCC-C-eeeecccCCc-eEEEEeccceE
Confidence 33445555552222222 344569999987652 112223343 3 4599999775 47777889999
Q ss_pred EEEecCC
Q 011709 221 VLWSIQD 227 (479)
Q Consensus 221 ~vwd~~~ 227 (479)
+++++..
T Consensus 107 ~Vy~~~g 113 (829)
T KOG2280|consen 107 HVYGLLG 113 (829)
T ss_pred EEeecch
Confidence 9999864
No 429
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.36 E-value=18 Score=35.09 Aligned_cols=154 Identities=12% Similarity=0.155 Sum_probs=86.9
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCCc--eeeeccCCCCeEEEEecCC---CCcEEEEEeCCCcEEEEecCCCCCCCC-
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNPL---DDNLILTGSADNSVRMFDRRNLTSNGV- 361 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~l~~sp~---~~~~l~tgs~dg~I~iwd~~~~~~~~~- 361 (479)
+++...++.|+..|.++||+........ +.....-..+|..+...++ .+...++.=.-..+.||.+........
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 4455689999999999999986544211 1222245678888876542 223333334567788888854321100
Q ss_pred C--CceeeecCCC--CcEEEEEEecCC----CcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCce
Q 011709 362 G--SPINKFEGHS--AAVLCVQWSPDK----SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSS 433 (479)
Q Consensus 362 ~--~~~~~~~~h~--~~v~~l~~~p~~----~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~ 433 (479)
+ -.+..+..|. .....+++-|-| +..++.-+.||.+.+++-+.. .......+.--..
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~---------------~f~~~lp~~llPg 178 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF---------------AFSRFLPDFLLPG 178 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE---------------EEEEEcCCCCCCc
Confidence 0 1122222232 223344444432 446778899999999997653 1112222222256
Q ss_pred eEEEecCCCeeeecCCCccccceeEEEE
Q 011709 434 SIKFVLRESCLVDNNHGLSYANKKIKIY 461 (479)
Q Consensus 434 ~~~~sp~~~~l~~~~~~~~~~d~~i~i~ 461 (479)
.+.|.+....+++++. +..+..|
T Consensus 179 Pl~Y~~~tDsfvt~ss-----s~~l~~Y 201 (418)
T PF14727_consen 179 PLCYCPRTDSFVTASS-----SWTLECY 201 (418)
T ss_pred CeEEeecCCEEEEecC-----ceeEEEe
Confidence 6778777777777666 5566666
No 430
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.30 E-value=3.7 Score=39.69 Aligned_cols=76 Identities=14% Similarity=0.275 Sum_probs=51.5
Q ss_pred cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEec---C--------------
Q 011709 321 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP---D-------------- 383 (479)
Q Consensus 321 ~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p---~-------------- 383 (479)
.....+.+++.+| ++++.|+...=|.|.++|+.. +..++.++|-.+. .+.|-. .
T Consensus 305 D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~------~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 305 DSKREGESICLSP-SGRLAAVTDSLGRVLLIDVAR------GIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred cCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCC------ChhhhhhccCccc--eEEEEEeecccccccccccccCCC
Confidence 3445688999999 888888877779999999998 6677777765543 122210 0
Q ss_pred ---CCcEEEEEeCCCCEEEEeCCCC
Q 011709 384 ---KSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 384 ---~~~llas~s~Dg~v~iwd~~~~ 405 (479)
..+|++-+-.-|.|.||.++.+
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g 400 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQG 400 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCC
Confidence 1124444555778888888874
No 431
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.30 E-value=16 Score=35.92 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=64.7
Q ss_pred CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee-----cCCCCcEEEEEEecCC------CcEEEEE
Q 011709 323 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-----EGHSAAVLCVQWSPDK------SSVFGSS 391 (479)
Q Consensus 323 ~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~p~~------~~llas~ 391 (479)
-..-+.|+|.| ++++|++--..|.|++++..... ...+..+ ..-.+....|+|+|+- ++++++-
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~----~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGE----VKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCc----eeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence 34568899999 88888777667999999865422 1122111 1135678999999884 3455554
Q ss_pred eC---------CCCEEEEeCCCCCccccCCCCCCCCCCeeEEE-e---CCCCCceeEEEecCCCeeeecCCC
Q 011709 392 AE---------DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-H---AGHSPSSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 392 s~---------Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~-~---~gh~~~~~~~~sp~~~~l~~~~~~ 450 (479)
+. ...|.-|.+........ . .+.++. . ..|. -..++|.||+...++.|+.
T Consensus 104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~-------~-~~~Il~~lP~~~~H~-GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 104 TYKNGDKELPNHTKIVRYTYDKSTQTLE-------K-PVDLLAGLPAGNDHN-GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred eccCCCCCccCCcEEEEEEecCCCCccc-------c-ceEEEecCCCCCCcC-CceEEECCCCcEEEEECCC
Confidence 22 12333344432111110 1 122332 1 1222 4688899999888877763
No 432
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.91 E-value=11 Score=36.84 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=44.9
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
.+++.++..|-|++||--..+ ....+.+-...|-.+..+. +|.++++.+ ...+.+-|++-
T Consensus 574 GyIa~as~kGDirLyDRig~r--AKtalP~lG~aIk~idvta-~Gk~ilaTC-k~yllL~d~~i 633 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKR--AKTALPGLGDAIKHIDVTA-NGKHILATC-KNYLLLTDVPI 633 (776)
T ss_pred ceEEEecCCCceeeehhhcch--hhhcCcccccceeeeEeec-CCcEEEEee-cceEEEEeccc
Confidence 379999999999999976544 3444556777888999988 777766555 45778888764
No 433
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.79 E-value=9.9 Score=36.13 Aligned_cols=114 Identities=17% Similarity=0.136 Sum_probs=54.9
Q ss_pred EEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEec-CCCCcEEEEEeC------------------
Q 011709 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN-PLDDNLILTGSA------------------ 344 (479)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s-p~~~~~l~tgs~------------------ 344 (479)
..+++++ +.++-......|+-.|+++.+. ...+......+-...|. +.++..++..-.
T Consensus 86 ~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e~--~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 86 GFLSPDD-RALYYVKNGRSLRRVDLDTLEE--RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFY 162 (386)
T ss_dssp -EE-TTS-SEEEEEETTTEEEEEETTT--E--EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred eEEecCC-CeEEEEECCCeEEEEECCcCcE--EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence 4556776 3444344556888889999873 33333445555455664 224444332211
Q ss_pred ----CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeC---CCC-EEEEeCCCCCc
Q 011709 345 ----DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGL-LNIWDYEKVGK 407 (479)
Q Consensus 345 ----dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~---Dg~-v~iwd~~~~~~ 407 (479)
...|.-.|+++ ++. ..+..-...+.-+.|+|..+.+|+-|-. |.. -|||-++..+.
T Consensus 163 ~a~p~~~i~~idl~t------G~~-~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 163 EARPHCRIFTIDLKT------GER-KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp HC---EEEEEEETTT--------E-EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred hhCCCceEEEEECCC------Cce-eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence 11233334443 332 2222244577889999998887766543 332 37787776543
No 434
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.68 E-value=19 Score=32.91 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=47.4
Q ss_pred CCceEEEEEeeCCCcEEEEEe------cCCeEEEEeCCCCCCCceee-e-ccCCCCeEEEEecCCCC-cEEEEEe-CCC-
Q 011709 278 EDTVEDVTFCPSSAQEFCSVG------DDSCLILWDARVGTSPVIKV-E-KAHDADLHCVDWNPLDD-NLILTGS-ADN- 346 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~-~-~~~~~~v~~l~~sp~~~-~~l~tgs-~dg- 346 (479)
.+.|+++.|..+. .+++.|. ....+..||..+..+..... . ..-.++|..+.+...+. ++.++|. .+|
T Consensus 36 ~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~ 114 (281)
T PF12768_consen 36 SGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGS 114 (281)
T ss_pred eEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCC
Confidence 4679999998555 6666664 45678999998877321111 0 12357888888854344 4554544 344
Q ss_pred -cEEEEecCC
Q 011709 347 -SVRMFDRRN 355 (479)
Q Consensus 347 -~I~iwd~~~ 355 (479)
.|..||=..
T Consensus 115 ~~l~~~dGs~ 124 (281)
T PF12768_consen 115 TFLMKYDGSS 124 (281)
T ss_pred ceEEEEcCCc
Confidence 466676544
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.61 E-value=3.7 Score=39.80 Aligned_cols=128 Identities=15% Similarity=0.186 Sum_probs=76.5
Q ss_pred CCCCCCCceeecCCCCceEEEEEeeCC-------CcEEEEEecCCeEEEEeCCCCCCCceeee---ccCCCCeEEEEecC
Q 011709 264 DGPSVGPRGIYNGHEDTVEDVTFCPSS-------AQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNP 333 (479)
Q Consensus 264 ~~~~~~~~~~~~~h~~~v~~l~~~~~~-------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~sp 333 (479)
|...+..+....-|..- -+.|.|.. .+.|+-.|. ..|.-.|.|-....+.... ........|..-.
T Consensus 496 DIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~-~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT- 571 (776)
T COG5167 496 DIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSD-YSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT- 571 (776)
T ss_pred ecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecc-cceEEecccccCCceeeeeehhccccccccccccc-
Confidence 33334444444444332 45555532 123444444 4454457765442221111 1222334444333
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 334 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 334 ~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
...|+|+||..|-|++||.-. .+.-..+.+-...|..+..+.+|.++||+| ...+.+-|++-
T Consensus 572 -esGyIa~as~kGDirLyDRig------~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~i 633 (776)
T COG5167 572 -ESGYIAAASRKGDIRLYDRIG------KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPI 633 (776)
T ss_pred -cCceEEEecCCCceeeehhhc------chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEeccc
Confidence 357999999999999999754 234445677788999999999999998887 45788888764
No 436
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.51 E-value=8.4 Score=36.93 Aligned_cols=169 Identities=14% Similarity=0.073 Sum_probs=93.2
Q ss_pred ecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCC----CeE-EEEecCCCCcEEEEEeCCCcE
Q 011709 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA----DLH-CVDWNPLDDNLILTGSADNSV 348 (479)
Q Consensus 274 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~-~l~~sp~~~~~l~tgs~dg~I 348 (479)
+......|..+-..|++. .+..-+. .++.++++.+..-...+......+ .|+ ++..-. .+.-+..++.||.|
T Consensus 216 L~~~~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~v 292 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLV 292 (733)
T ss_pred cCCCccchHhhEECCCCC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCce
Confidence 334455678888999994 4554433 678888887655211111111111 122 122222 67788899999988
Q ss_pred EEE-ecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeC
Q 011709 349 RMF-DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 427 (479)
Q Consensus 349 ~iw-d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 427 (479)
.-| |.|.... ..-..+..++-...++.-+.=. ..+..|++-+..|++.++.-... +.+++...
T Consensus 293 sQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~--------------~~lL~~~~ 356 (733)
T COG4590 293 SQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSE--------------KLLLFERA 356 (733)
T ss_pred eeeeeeecCCC-CcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccC--------------cceehhhh
Confidence 866 6665321 0011122222222333333222 23335777778888877765442 23344332
Q ss_pred CCCCceeEEEecCCCeeeecCCCccccceeEEEEeeccccc
Q 011709 428 GHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEALK 468 (479)
Q Consensus 428 gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~~ 468 (479)
- ..+.-+++||++.++++-. .|+|+++...+...
T Consensus 357 ~-~~~~~~~~Sp~~~~Ll~e~------~gki~~~~l~Nr~P 390 (733)
T COG4590 357 Y-QAPQLVAMSPNQAYLLSED------QGKIRLAQLENRNP 390 (733)
T ss_pred h-cCcceeeeCcccchheeec------CCceEEEEecCCCC
Confidence 2 3467789999998887654 46899887665543
No 437
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.98 E-value=20 Score=32.25 Aligned_cols=193 Identities=9% Similarity=0.079 Sum_probs=99.3
Q ss_pred eeEEEecCCCce--eEEEecCCCCcEEEEEeCCC--cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC
Q 011709 132 KKHKTIIHPGEV--NRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 207 (479)
Q Consensus 132 ~~~~~~~h~~~V--~~l~~~p~~~~~lat~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~ 207 (479)
++++..+|.... ..+.|.. ++.++-+.+.-| .|+.+|+.+++... ...+...- -.-+++...+
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~----------~~~l~~~~--FgEGit~~~d 100 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQ----------SVPLPPRY--FGEGITILGD 100 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEE----------EEE-TTT----EEEEEEETT
T ss_pred EEEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEE----------EEECCccc--cceeEEEECC
Confidence 467778887553 4466655 677777877766 79999999883221 11111111 1123333322
Q ss_pred CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 208 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
+...-.-.++...+||.++.... ..+. ....=..++
T Consensus 101 -~l~qLTWk~~~~f~yd~~tl~~~----------------------------------------~~~~-y~~EGWGLt-- 136 (264)
T PF05096_consen 101 -KLYQLTWKEGTGFVYDPNTLKKI----------------------------------------GTFP-YPGEGWGLT-- 136 (264)
T ss_dssp -EEEEEESSSSEEEEEETTTTEEE----------------------------------------EEEE--SSS--EEE--
T ss_pred -EEEEEEecCCeEEEEccccceEE----------------------------------------EEEe-cCCcceEEE--
Confidence 22333345788899998653221 1221 112334444
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccC-----CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCC
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-----DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG 362 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~ 362 (479)
.++. .|+.......|.++|..+.+ ........ -..++-+.|- +|.+.|=.=....|...|..+ |
T Consensus 137 ~dg~-~Li~SDGS~~L~~~dP~~f~--~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~t------G 205 (264)
T PF05096_consen 137 SDGK-RLIMSDGSSRLYFLDPETFK--EVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPET------G 205 (264)
T ss_dssp ECSS-CEEEE-SSSEEEEE-TTT-S--EEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-------
T ss_pred cCCC-EEEEECCccceEEECCcccc--eEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCC------C
Confidence 4563 45555556789999988765 33333211 1235556665 444444444445555566655 4
Q ss_pred Cceeeec---------------CCCCcEEEEEEecCCCcEEEEEe
Q 011709 363 SPINKFE---------------GHSAAVLCVQWSPDKSSVFGSSA 392 (479)
Q Consensus 363 ~~~~~~~---------------~h~~~v~~l~~~p~~~~llas~s 392 (479)
..+..+. ....-.+.|||+|....+++||=
T Consensus 206 ~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 206 KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 4433321 11356899999999998888874
No 438
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.92 E-value=5.2 Score=35.08 Aligned_cols=67 Identities=9% Similarity=0.178 Sum_probs=46.0
Q ss_pred EeeCCCcEEEEEecCCeEEEEeCCCCCCCcee-----eec-------cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEec
Q 011709 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIK-----VEK-------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 353 (479)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~-------~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~ 353 (479)
+...+ .++++.+.+|.+++||+.+++..... .+. .....|..+.++. +|.-|++-+ +|..+.||.
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEecc
Confidence 33445 57899999999999999988731110 111 3456788888886 777666654 578888887
Q ss_pred CC
Q 011709 354 RN 355 (479)
Q Consensus 354 ~~ 355 (479)
..
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 65
No 439
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.82 E-value=2.8 Score=24.85 Aligned_cols=30 Identities=23% Similarity=0.476 Sum_probs=22.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEeCC--CCEEEE
Q 011709 371 HSAAVLCVQWSPDKSSVFGSSAED--GLLNIW 400 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~llas~s~D--g~v~iw 400 (479)
....-....|+|||++|+.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445667889999999887777777 776666
No 440
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.24 E-value=10 Score=37.04 Aligned_cols=93 Identities=20% Similarity=0.156 Sum_probs=57.1
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC------CCCCeeEEEeCCCCCceeEEEecCC---Cee
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT------NYPAGLFFQHAGHSPSSSIKFVLRE---SCL 444 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~------~~~~~l~~~~~gh~~~~~~~~sp~~---~~l 444 (479)
.|..+..++.|.. ++-+|.+|.+.++=.+.-|.....++... .+...-+|.-..|-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~~GS~-VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSH-VALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCce-EEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 5788899999996 45666688655544343343333333321 1122345555555557899999975 455
Q ss_pred eecCCCccccceeEEEEeecccccceee
Q 011709 445 VDNNHGLSYANKKIKIYCHLEALKSFQI 472 (479)
Q Consensus 445 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~ 472 (479)
..-.. |+.||+|+..+.-..|++
T Consensus 184 ~iL~s-----dnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 184 VLLTS-----DNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred EEEec-----CcEEEEEecCCcchhhcc
Confidence 55455 789999987765544443
No 441
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.00 E-value=27 Score=32.88 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=20.9
Q ss_pred eeeeeecCCCCcEEEecCCCcEEEEec
Q 011709 199 EFALAMCPTEPYVLSGGKDKSVVLWSI 225 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~s~dg~i~vwd~ 225 (479)
-++|+|.|+|+.|++ ...|.|++++.
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~ 29 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDK 29 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEET
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeC
Confidence 369999999876554 56999999993
No 442
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.77 E-value=19 Score=34.69 Aligned_cols=104 Identities=10% Similarity=0.156 Sum_probs=65.3
Q ss_pred CceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC
Q 011709 197 NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 276 (479)
Q Consensus 197 ~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (479)
++|.++.||+|.+.||.--.|.+|.+++......... .....+.
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~------------------------------------~~~~ck~ 110 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE------------------------------------YTQECKT 110 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhH------------------------------------HHHHhcc
Confidence 4799999999999999999999999998743221110 0122223
Q ss_pred CCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEE
Q 011709 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT 341 (479)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~t 341 (479)
.+..|..+.|...- -++..+..| +-+|-...... .++..+.|...|+=-.|.+ +.+.++-
T Consensus 111 k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~pekr-slRlVks~~~nvnWy~yc~-et~v~LL 170 (657)
T KOG2377|consen 111 KNANILGFCWTSST--EIAFITDQG-IEFYQVLPEKR-SLRLVKSHNLNVNWYMYCP-ETAVILL 170 (657)
T ss_pred CcceeEEEEEecCe--eEEEEecCC-eEEEEEchhhh-hhhhhhhcccCccEEEEcc-ccceEee
Confidence 34558888887654 355544444 55555443332 2445567777888888888 5554433
No 443
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.70 E-value=6.5 Score=33.00 Aligned_cols=32 Identities=19% Similarity=0.472 Sum_probs=27.1
Q ss_pred CcEEEEEEecC-----CCcEEEEEeCCCCEEEEeCCC
Q 011709 373 AAVLCVQWSPD-----KSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 373 ~~v~~l~~~p~-----~~~llas~s~Dg~v~iwd~~~ 404 (479)
..|.+++|||. ++.+||+...++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 37899999994 356899999999999998764
No 444
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.34 E-value=13 Score=36.42 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=53.9
Q ss_pred CCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC---CCCceeeec-----------CCCCcEEEEEEecCC--CcE
Q 011709 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG---VGSPINKFE-----------GHSAAVLCVQWSPDK--SSV 387 (479)
Q Consensus 324 ~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~---~~~~~~~~~-----------~h~~~v~~l~~~p~~--~~l 387 (479)
-.|..+..++ .|..++-.|.+|.+.++=.+.+.... .++++...+ ...-.+..++|+|+. ..-
T Consensus 104 feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 104 FEVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 3577888999 89999999999987765433322110 022221111 122356788999986 333
Q ss_pred EEEEeCCCCEEEEeCCCCCcc
Q 011709 388 FGSSAEDGLLNIWDYEKVGKK 408 (479)
Q Consensus 388 las~s~Dg~v~iwd~~~~~~~ 408 (479)
|..-+.|..|||||++.....
T Consensus 183 L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEEecCcEEEEEecCCcchh
Confidence 556777999999999985443
No 445
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.19 E-value=41 Score=34.10 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=31.8
Q ss_pred eEEEEeCCCCCCCceeeec--cCC-------CCeEEEEecCCCCc---EEEEEeCCCcEEEEecCC
Q 011709 302 CLILWDARVGTSPVIKVEK--AHD-------ADLHCVDWNPLDDN---LILTGSADNSVRMFDRRN 355 (479)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~--~~~-------~~v~~l~~sp~~~~---~l~tgs~dg~I~iwd~~~ 355 (479)
.|.-.|+++++ ..-.++ .|. ....-+.+.. ++. .++.+..+|.+++.|.++
T Consensus 272 s~vAld~~TG~--~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~t 334 (527)
T TIGR03075 272 SIVARDPDTGK--IKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTN 334 (527)
T ss_pred eEEEEccccCC--EEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCC
Confidence 67777888888 333332 221 1111122222 454 888999999999999988
No 446
>PLN02153 epithiospecifier protein
Probab=86.13 E-value=31 Score=32.64 Aligned_cols=12 Identities=8% Similarity=0.108 Sum_probs=9.2
Q ss_pred eEEEEeCCCCCC
Q 011709 302 CLILWDARVGTS 313 (479)
Q Consensus 302 ~i~iwd~~~~~~ 313 (479)
.|.+||..+..+
T Consensus 160 ~v~~yd~~~~~W 171 (341)
T PLN02153 160 TIEAYNIADGKW 171 (341)
T ss_pred eEEEEECCCCeE
Confidence 577899988764
No 447
>PRK13684 Ycf48-like protein; Provisional
Probab=86.08 E-value=31 Score=32.58 Aligned_cols=157 Identities=10% Similarity=0.046 Sum_probs=80.2
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCc
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~ 219 (479)
.+.++++.+.| ++.+++++ ..|.+..= ...+. +.-..........++++.+.++++.++.| ..|.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s-~~~gg-----------~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~ 236 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYST-WEPGQ-----------TAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQ 236 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEE-cCCCC-----------CeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCE
Confidence 46788899888 66566555 44554421 11110 00111222233457899999998866665 4676
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCcee-ecCCCCceEEEEEeeCCCcEEEEEe
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVG 298 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (479)
+++=..+.+.. ...+.. .......+.++.+.+++ . ++.++
T Consensus 237 ~~~~s~d~G~s-------------------------------------W~~~~~~~~~~~~~l~~v~~~~~~-~-~~~~G 277 (334)
T PRK13684 237 IRFNDPDDLES-------------------------------------WSKPIIPEITNGYGYLDLAYRTPG-E-IWAGG 277 (334)
T ss_pred EEEccCCCCCc-------------------------------------cccccCCccccccceeeEEEcCCC-C-EEEEc
Confidence 65322222111 000000 00012357788898876 4 55566
Q ss_pred cCCeEEEEeCCCCC-CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEec
Q 011709 299 DDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 353 (479)
Q Consensus 299 ~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~ 353 (479)
.+|.|.. ....++ ...+.....-....+.+.|.. ++.. +..+..|.|.-|+-
T Consensus 278 ~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 278 GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKG-FVLGQRGVLLRYVG 330 (334)
T ss_pred CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeC-CCce-EEECCCceEEEecC
Confidence 7776653 333333 111111112234677888775 4444 55667788887764
No 448
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=84.67 E-value=12 Score=36.15 Aligned_cols=91 Identities=14% Similarity=0.167 Sum_probs=56.9
Q ss_pred CceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCC----eEEEEecC------------
Q 011709 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD----LHCVDWNP------------ 333 (479)
Q Consensus 270 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----v~~l~~sp------------ 333 (479)
.+..+......+.++..+|.+ .+.++...-|.|.++|+.++. +++..++-... +....-..
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~--vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGI--VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred eEEeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCCh--hhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 345555666779999999998 677777777999999999887 55555443221 11111100
Q ss_pred -CCC-cEEEEEeCCCcEEEEecCCCCCCCCCCceeeec
Q 011709 334 -LDD-NLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 334 -~~~-~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
... .+++-+-.-|.|.||.++. +..+..+.
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~------g~Rv~a~~ 407 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQ------GPRVAAFN 407 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCC------CCEEEEEE
Confidence 001 1333445578899999988 56655554
No 449
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.91 E-value=0.22 Score=47.50 Aligned_cols=147 Identities=13% Similarity=0.204 Sum_probs=92.1
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE-EecCCCcEEEE
Q 011709 145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLW 223 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~-s~s~dg~i~vw 223 (479)
..+|-|.+.+ ++.++.+..+..||-.... .+..........++|..++..++ .+-..+.+.+|
T Consensus 39 ~~~w~~e~~n-lavaca~tiv~~YD~agq~---------------~le~n~tg~aldm~wDkegdvlavlAek~~piylw 102 (615)
T KOG2247|consen 39 IHRWRPEGHN-LAVACANTIVIYYDKAGQV---------------ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLW 102 (615)
T ss_pred eeeEecCCCc-eehhhhhhHHHhhhhhcce---------------ecccCCchhHhhhhhccccchhhhhhhcCCCeeec
Confidence 3456675665 6666667788888865431 11111111235888988877544 45567899999
Q ss_pred ecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeE
Q 011709 224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL 303 (479)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 303 (479)
|+++......... -.|.... +.|++.. ..++.+...|.+
T Consensus 103 d~n~eytqqLE~g--------------------------------------g~~s~sl--l~wsKg~-~el~ig~~~gn~ 141 (615)
T KOG2247|consen 103 DVNSEYTQQLESG--------------------------------------GTSSKSL--LAWSKGT-PELVIGNNAGNI 141 (615)
T ss_pred hhhhhhHHHHhcc--------------------------------------CcchHHH--HhhccCC-ccccccccccce
Confidence 9986433110000 0012222 5777766 467777888999
Q ss_pred EEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEe
Q 011709 304 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (479)
Q Consensus 304 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd 352 (479)
.++..++.+ .....-.|...++++++.+ ..+.+.++.|..+.+-.
T Consensus 142 viynhgtsR--~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 142 VIYNHGTSR--RIIVMGKHQRRGTQIAVTL--EDYVILCDCDNTLSVTT 186 (615)
T ss_pred EEEeccchh--hhhhhcccccceeEEEecc--cceeeecCcHHHHHHhh
Confidence 999998877 3334434999999999998 45677777776655443
No 450
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.03 E-value=21 Score=39.15 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=49.5
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCC----CC---C-C--------------Cceeeec-cCCCCeEEEEecCC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR----VG---T-S--------------PVIKVEK-AHDADLHCVDWNPL 334 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~----~~---~-~--------------~~~~~~~-~~~~~v~~l~~sp~ 334 (479)
...|+++....+| ++|++| .|| .+|.+- .+ + + |.+..+. .+..+|..++...
T Consensus 178 g~~V~~I~~t~nG-RIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~- 252 (1311)
T KOG1900|consen 178 GVSVNCITYTENG-RIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN- 252 (1311)
T ss_pred CceEEEEEeccCC-cEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-
Confidence 4568899876777 666665 455 444331 11 0 0 1111122 5677999999998
Q ss_pred CCcEEEEEeCCCcEEEEecCC
Q 011709 335 DDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 335 ~~~~l~tgs~dg~I~iwd~~~ 355 (479)
..+.+.+-+..|+|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 889999999999999999976
No 451
>PLN02193 nitrile-specifier protein
Probab=83.03 E-value=53 Score=32.78 Aligned_cols=61 Identities=7% Similarity=-0.068 Sum_probs=32.9
Q ss_pred cEEEEEecC-----CeEEEEeCCCCCCCceeee---ccCCCCeEEEEecCCCCcEEEEEeCC----CcEEEEecCC
Q 011709 292 QEFCSVGDD-----SCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDRRN 355 (479)
Q Consensus 292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~l~tgs~d----g~I~iwd~~~ 355 (479)
.+++.|+.+ ..+..||+.+.++..+... .........+.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~---~gkiyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 280 NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV---QGKVWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE---CCcEEEEECCCCCccCceEEEECCC
Confidence 566666654 3467888887663211110 011111122222 45677777765 4588999876
No 452
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=82.98 E-value=48 Score=32.28 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=81.2
Q ss_pred hhhhhccccccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeE
Q 011709 55 YDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKH 134 (479)
Q Consensus 55 y~~~~~~~l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (479)
.+.+...++.-|.|.++....+... .....-++ .++.+.|..+.......... ......
T Consensus 62 ~~lllE~~l~~PILqv~~G~F~s~~-~~~~LaVL--------hP~kl~vY~v~~~~g~~~~g------------~~~~L~ 120 (418)
T PF14727_consen 62 EDLLLETQLKDPILQVECGKFVSGS-EDLQLAVL--------HPRKLSVYSVSLVDGTVEHG------------NQYQLE 120 (418)
T ss_pred ccEEEEEecCCcEEEEEeccccCCC-CcceEEEe--------cCCEEEEEEEEecCCCcccC------------cEEEEE
Confidence 3678889999999999987753332 22122222 57777777764432211100 011223
Q ss_pred EEecCCC--ceeEEEecC---C-CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC
Q 011709 135 KTIIHPG--EVNRIRELP---Q-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 208 (479)
Q Consensus 135 ~~~~h~~--~V~~l~~~p---~-~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~ 208 (479)
....|.= ....+.+-| . ..++|+.-+.||.+.+++-+.. .....+.+.- .--.+.|.+.-
T Consensus 121 ~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~------------~f~~~lp~~l--lPgPl~Y~~~t 186 (418)
T PF14727_consen 121 LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF------------AFSRFLPDFL--LPGPLCYCPRT 186 (418)
T ss_pred EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE------------EEEEEcCCCC--CCcCeEEeecC
Confidence 3334432 222233222 1 2578999999999999997765 1112222221 12468888888
Q ss_pred CcEEEecCCCcEEEEecCC
Q 011709 209 PYVLSGGKDKSVVLWSIQD 227 (479)
Q Consensus 209 ~~l~s~s~dg~i~vwd~~~ 227 (479)
..|++++.+..|.-|....
T Consensus 187 Dsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 187 DSFVTASSSWTLECYKYQD 205 (418)
T ss_pred CEEEEecCceeEEEecHHH
Confidence 8899999998999887643
No 453
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.62 E-value=6.3 Score=23.57 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=22.0
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCCceeeec
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 320 (479)
|++..++++...+++|.++|..++. .+....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~--~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK--VIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe--EEEEEE
Confidence 4565667777778999999998776 444443
No 454
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.45 E-value=32 Score=37.79 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=28.3
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCC
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA 172 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~ 172 (479)
..+-+.....++|.| ...++|.|+..|.|+++-...
T Consensus 31 ~~G~~~~~~~~afD~-~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 31 RHGFPSTPSALAFDP-TQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred ecCCCCCCcceeecc-ccceEEEEEecccEEEecccc
Confidence 344455677788999 777999999999999997654
No 455
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.57 E-value=8.2 Score=22.73 Aligned_cols=30 Identities=3% Similarity=0.170 Sum_probs=21.9
Q ss_pred CCCceEEEEEeeCCCcEEEEEecC--CeEEEE
Q 011709 277 HEDTVEDVTFCPSSAQEFCSVGDD--SCLILW 306 (479)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~d--g~i~iw 306 (479)
....-....|+|+|..+++++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445677889999998777777777 766666
No 456
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.45 E-value=10 Score=22.62 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=19.7
Q ss_pred cCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 382 PDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 382 p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
|++++++++...+++|.++|+.+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~ 24 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN 24 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC
Confidence 577778888878999999999763
No 457
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.37 E-value=27 Score=31.91 Aligned_cols=92 Identities=15% Similarity=0.330 Sum_probs=57.1
Q ss_pred CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEe------CCCcEEEEecCCCCCCCCCCceeeecC---
Q 011709 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS------ADNSVRMFDRRNLTSNGVGSPINKFEG--- 370 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs------~dg~I~iwd~~~~~~~~~~~~~~~~~~--- 370 (479)
-..|++||..+.++ ...-.+-.+.|+++.|.. +..++++|. ....+..||... .....+.+
T Consensus 15 C~~lC~yd~~~~qW--~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~-------~~w~~~~~~~s 84 (281)
T PF12768_consen 15 CPGLCLYDTDNSQW--SSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKN-------QTWSSLGGGSS 84 (281)
T ss_pred CCEEEEEECCCCEe--ecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCC-------CeeeecCCccc
Confidence 45699999988773 233334668899999985 667777775 355788899886 22323333
Q ss_pred --CCCcEEEEEEecC-CCcEEEEEe-CCC--CEEEEe
Q 011709 371 --HSAAVLCVQWSPD-KSSVFGSSA-EDG--LLNIWD 401 (479)
Q Consensus 371 --h~~~v~~l~~~p~-~~~llas~s-~Dg--~v~iwd 401 (479)
-.++|+.+.+... ...+++.|. .+| .|..||
T Consensus 85 ~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 85 NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 2367888877433 333444443 233 456665
No 458
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=78.87 E-value=81 Score=32.72 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=26.3
Q ss_pred ceeeeeecCCCCcEEEecCCCcEEEEecCC
Q 011709 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQD 227 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~ 227 (479)
.++++.-+|.|+.++++..||.|++++...
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 467888889999999999999999999753
No 459
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.60 E-value=31 Score=37.95 Aligned_cols=79 Identities=13% Similarity=0.360 Sum_probs=51.5
Q ss_pred CCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC-------------------CCCceeeec-CCCCcEEEEEEe
Q 011709 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG-------------------VGSPINKFE-GHSAAVLCVQWS 381 (479)
Q Consensus 322 ~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~-------------------~~~~~~~~~-~h~~~v~~l~~~ 381 (479)
....|+++.... +|+.|++|- || .||.+.-....+ .+. +..+. .+.++|..++..
T Consensus 177 dg~~V~~I~~t~-nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 177 DGVSVNCITYTE-NGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITID 251 (1311)
T ss_pred CCceEEEEEecc-CCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEec
Confidence 356788888665 787777765 45 444442211100 011 22233 567899999998
Q ss_pred cCCCcEEEEEeCCCCEEEEeCCCCC
Q 011709 382 PDKSSVFGSSAEDGLLNIWDYEKVG 406 (479)
Q Consensus 382 p~~~~llas~s~Dg~v~iwd~~~~~ 406 (479)
.... ++.+-+..|+|.+||+...|
T Consensus 252 ~SR~-IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 252 NSRN-ILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred cccc-eeeeeccCceEEEEEccCCC
Confidence 7655 78899999999999998743
No 460
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.56 E-value=67 Score=31.16 Aligned_cols=69 Identities=14% Similarity=0.065 Sum_probs=41.0
Q ss_pred CceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEE
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 351 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iw 351 (479)
..+.++.|.+++ . ++.++.+|.+....-.-...........-...++.+.|.+ +++. +..+.+|.|.-|
T Consensus 328 ~~l~~v~~~~d~-~-~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~g-~~~G~~G~il~~ 396 (398)
T PLN00033 328 FGILDVGYRSKK-E-AWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFD-DKKG-FVLGNDGVLLRY 396 (398)
T ss_pred cceEEEEEcCCC-c-EEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcC-CCce-EEEeCCcEEEEe
Confidence 358899998776 4 5666777877665432222112111123356788999976 4444 445567877654
No 461
>PLN02193 nitrile-specifier protein
Probab=78.22 E-value=77 Score=31.64 Aligned_cols=61 Identities=7% Similarity=0.110 Sum_probs=33.9
Q ss_pred cEEEEEecC----CeEEEEeCCCCCCCceeeec--cCC-CCeEEEEecCCCCcEEEEEeCC--------------CcEEE
Q 011709 292 QEFCSVGDD----SCLILWDARVGTSPVIKVEK--AHD-ADLHCVDWNPLDDNLILTGSAD--------------NSVRM 350 (479)
Q Consensus 292 ~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~--~~~-~~v~~l~~sp~~~~~l~tgs~d--------------g~I~i 350 (479)
.+++.++.+ ..+.+||+.+.++..+.... ... ....++.+ ++++++.|+.+ ..+.+
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV---GKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE---CCEEEEECCccCCccccccCccceeccEEE
Confidence 456666544 45899999987743222110 111 11222333 56777777753 24788
Q ss_pred EecCC
Q 011709 351 FDRRN 355 (479)
Q Consensus 351 wd~~~ 355 (479)
||+.+
T Consensus 407 ~D~~t 411 (470)
T PLN02193 407 LDTET 411 (470)
T ss_pred EEcCc
Confidence 88876
No 462
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=77.94 E-value=55 Score=29.84 Aligned_cols=207 Identities=17% Similarity=0.127 Sum_probs=116.8
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.+..+.-.+-+..++++. ++...+..+.-++|.|+.+.... ...-.-..+ .+.-.|.-.|++..
T Consensus 79 l~~~i~~~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP-----------~~~~~lnt~--gyaygv~vsGn~aY 142 (370)
T COG5276 79 LLSVINARDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSP-----------TLIGFLNTD--GYAYGVYVSGNYAY 142 (370)
T ss_pred eEEEEehhhhhheeEecc---cEEEEEcCCCceEEEeccCCCCc-----------ceeccccCC--ceEEEEEecCCEEE
Confidence 344455566778888854 46666667778999999987321 111111121 23444555688888
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
.+..|.-+.+.|+.+..... ....+......-..++.+ | +
T Consensus 143 VadlddgfLivdvsdpssP~-------------------------------------lagrya~~~~d~~~v~IS--G-n 182 (370)
T COG5276 143 VADLDDGFLIVDVSDPSSPQ-------------------------------------LAGRYALPGGDTHDVAIS--G-N 182 (370)
T ss_pred EeeccCcEEEEECCCCCCce-------------------------------------eeeeeccCCCCceeEEEe--c-C
Confidence 88866667788887543211 012222223333556665 4 4
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
+...+..|+-+.+-|+.....|.+.........+.++..++ +..|++. .+--+.+-|...++. ...+-... ..
T Consensus 183 ~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd-nr~y~vv--y~egvlivd~s~~ss---p~~~gsye-t~ 255 (370)
T COG5276 183 YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD-NRAYLVV--YDEGVLIVDVSGPSS---PTVFGSYE-TS 255 (370)
T ss_pred eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecC-CeeEEEE--cccceEEEecCCCCC---ceEeeccc-cC
Confidence 56666788889999999988765544334444788888887 4444443 344566777776321 01111111 12
Q ss_pred C--cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 373 A--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 373 ~--~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
. .++.+..+ +++. ..+..+.-+-+-|++++
T Consensus 256 ~p~~~s~v~Vs--~~~~-Yvadga~gl~~idisnp 287 (370)
T COG5276 256 NPVSISTVPVS--GEYA-YVADGAKGLPIIDISNP 287 (370)
T ss_pred Ccccccceecc--ccee-eeeccccCceeEeccCC
Confidence 2 23333433 4433 34555666778888775
No 463
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=76.77 E-value=16 Score=35.16 Aligned_cols=166 Identities=13% Similarity=0.123 Sum_probs=90.5
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCcee-eeeecCCCCcEEEecCCC
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEF-ALAMCPTEPYVLSGGKDK 218 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~-~l~~s~~~~~l~s~s~dg 218 (479)
..+|..+-..| +++.|..-+. .++.|+++.+.....+. ......+.....|+ .+..-..|..|+.++.||
T Consensus 220 ~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rk-------l~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 220 FSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRK-------LVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred ccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhh-------hhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 35667777778 7777776665 58999998876322210 00000111111122 233333456788899999
Q ss_pred cEEEE-ecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 219 SVVLW-SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 219 ~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
-|.-| |++.... +....++.++-....+..+.-. +..+-|++-
T Consensus 291 ~vsQWFdvr~~~~-----------------------------------p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l 334 (733)
T COG4590 291 LVSQWFDVRRDGQ-----------------------------------PHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSL 334 (733)
T ss_pred ceeeeeeeecCCC-----------------------------------CcceeeeccccCcccceeeccc-cccceEEEE
Confidence 99887 4432111 0000011111112233322221 222457888
Q ss_pred ecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
...|++..+-....+ .+-.. .--..+.-+++|| .+.++++- ..|.|+++.+.+
T Consensus 335 ~~~G~L~~f~st~~~--~lL~~-~~~~~~~~~~~Sp-~~~~Ll~e-~~gki~~~~l~N 387 (733)
T COG4590 335 YRNGTLQSFYSTSEK--LLLFE-RAYQAPQLVAMSP-NQAYLLSE-DQGKIRLAQLEN 387 (733)
T ss_pred cCCCceeeeecccCc--ceehh-hhhcCcceeeeCc-ccchheee-cCCceEEEEecC
Confidence 888888887665544 22221 2223567789999 78887764 357899999887
No 464
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=76.48 E-value=1.2e+02 Score=32.77 Aligned_cols=156 Identities=11% Similarity=0.098 Sum_probs=92.0
Q ss_pred ceeEEEecCCCCcEEEEEeC----------CCcEEEEECCCCCCccccCCCCCCCCcEEEecc-CCCceeeeeecCCCCc
Q 011709 142 EVNRIRELPQNTKIVATHTD----------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNAEFALAMCPTEPY 210 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~v~~l~~s~~~~~ 210 (479)
.|.++.|..+.+.+++.|+. .|.|.|+.+.... .+.....+ ..+.++++.-- +|++
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~------------~L~~v~e~~v~Gav~aL~~f-ngkl 842 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN------------SLELVAETVVKGAVYALVEF-NGKL 842 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC------------ceeeeeeeeeccceeehhhh-CCeE
Confidence 34555577755777887754 4677777776631 11111111 11234444322 3544
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
|| +-+..|++++..+... ++.-..+...+..+...-.+
T Consensus 843 lA--~In~~vrLye~t~~~e----------------------------------------Lr~e~~~~~~~~aL~l~v~g 880 (1096)
T KOG1897|consen 843 LA--GINQSVRLYEWTTERE----------------------------------------LRIECNISNPIIALDLQVKG 880 (1096)
T ss_pred EE--ecCcEEEEEEccccce----------------------------------------ehhhhcccCCeEEEEEEecC
Confidence 44 3467899999865422 12333466678888887777
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCceee-eccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
..++.|.--+.+.+--.+..+...... -.-++.+++++.+- ++..++.+..+|.+.+....+
T Consensus 881 -deI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil--~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 881 -DEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEIL--DDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred -cEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEe--cCceEEeecccccEEEEEecC
Confidence 578888877777766555444212222 23577788888887 455666667788877765543
No 465
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=75.11 E-value=12 Score=38.14 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=36.6
Q ss_pred cEEEEEecCCeEEEEeCCC---CCCCceee----------ec-----------cCCCCeEEEEecC---CCCcEEEEEeC
Q 011709 292 QEFCSVGDDSCLILWDARV---GTSPVIKV----------EK-----------AHDADLHCVDWNP---LDDNLILTGSA 344 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~---~~~~~~~~----------~~-----------~~~~~v~~l~~sp---~~~~~l~tgs~ 344 (479)
..++.+..||.+....... ........ +. .....+.++++++ .+..++++-+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 5677778888888777664 11100000 00 0122344455543 25689999999
Q ss_pred CCcEEEEecCC
Q 011709 345 DNSVRMFDRRN 355 (479)
Q Consensus 345 dg~I~iwd~~~ 355 (479)
|+++|+||+.+
T Consensus 239 D~~LRiW~l~t 249 (547)
T PF11715_consen 239 DHTLRIWSLET 249 (547)
T ss_dssp TSEEEEEETTT
T ss_pred CCeEEEEECCC
Confidence 99999999998
No 466
>PLN02153 epithiospecifier protein
Probab=75.10 E-value=76 Score=29.99 Aligned_cols=52 Identities=12% Similarity=0.159 Sum_probs=28.4
Q ss_pred CeEEEEeCCCCCCCceeee---ccCCCCeEEEEecCCCCcEEEEEeCC--------------CcEEEEecCC
Q 011709 301 SCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSAD--------------NSVRMFDRRN 355 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~l~tgs~d--------------g~I~iwd~~~ 355 (479)
..|.+||+.+.++..+... ........++.+ ++.+++.|+.. ..|..||+.+
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~ 285 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV---GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET 285 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEE---CCEEEEECcccCCccccccccccccccEEEEEcCc
Confidence 4688999988774322211 001111222333 56777777752 2577888765
No 467
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=74.99 E-value=13 Score=26.88 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=27.2
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
...+.|.++|++++|+++....+.|++|....
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 34578999999999998888899999998754
No 468
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=73.86 E-value=74 Score=29.29 Aligned_cols=214 Identities=11% Similarity=0.135 Sum_probs=109.9
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEec----cCCCceeeeeecCCCC---------
Q 011709 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG----HQDNAEFALAMCPTEP--------- 209 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----h~~~~v~~l~~s~~~~--------- 209 (479)
-.-|+++| .+.+-++....+...+||.......- ........+.. +.....+.+.|+....
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g-----~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPL-----VQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccC-----CccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 36788999 55666677777899999987321000 00011222221 1112356777764332
Q ss_pred ---cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec-CC-CCceEEE
Q 011709 210 ---YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GH-EDTVEDV 284 (479)
Q Consensus 210 ---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h-~~~v~~l 284 (479)
.++.+++||+|.-|...-...... .....+. +. ...-..+
T Consensus 99 ~~a~Fif~tEdGTisaW~p~v~~t~~~-----------------------------------~~~~~~d~s~~gavYkGL 143 (336)
T TIGR03118 99 GPSRFLFVTEDGTLSGWAPALGTTRMT-----------------------------------RAEIVVDASQQGNVYKGL 143 (336)
T ss_pred cceeEEEEeCCceEEeecCcCCccccc-----------------------------------ccEEEEccCCCcceeeee
Confidence 367788999999998532111000 0000111 00 1122344
Q ss_pred EEeeC--CCcEEEEEecCCeEEEEeCCCCCCCceeeec-----cCCCC-----------eEEEEecCCCCcEEEEEeCCC
Q 011709 285 TFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEK-----AHDAD-----------LHCVDWNPLDDNLILTGSADN 346 (479)
Q Consensus 285 ~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~-----------v~~l~~sp~~~~~l~tgs~dg 346 (479)
++... +..++++--..++|.+||-.-....+-..+. ..-.+ |+-..-.+ +...=+.|-.-|
T Consensus 144 Ai~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G 222 (336)
T TIGR03118 144 AVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLG 222 (336)
T ss_pred EEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcc
Confidence 54432 4345555567889999986543311000000 00001 11111122 223334455567
Q ss_pred cEEEEecCCCCCCCCCCceeeec--CCCCcEEEEEEecC-----CCcEEEEEeCCCCEEEEeCCCC
Q 011709 347 SVRMFDRRNLTSNGVGSPINKFE--GHSAAVLCVQWSPD-----KSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 347 ~I~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~-----~~~llas~s~Dg~v~iwd~~~~ 405 (479)
.|-+||+. +..++++. +.-...+.|+..|. ...||+.-=.||+|..+|..++
T Consensus 223 ~VdvFd~~-------G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 223 YVNVFTLN-------GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred eEEEEcCC-------CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 99999987 57777763 23335566777553 2236655555999999998874
No 469
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.80 E-value=58 Score=28.08 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=25.3
Q ss_pred eEEEecCCCceeE--EEecCCCCcEEEEEeCCC--cEEEEECCCCC
Q 011709 133 KHKTIIHPGEVNR--IRELPQNTKIVATHTDSP--DVLIWDVEAQP 174 (479)
Q Consensus 133 ~~~~~~h~~~V~~--l~~~p~~~~~lat~s~dg--~i~iwd~~~~~ 174 (479)
.++...|...-.. +.+ .++.++.+.+.-| .|++||+.+++
T Consensus 36 vi~~yphDs~sfTQGL~~--~~g~i~esTG~yg~S~ir~~~L~~gq 79 (262)
T COG3823 36 VIRTYPHDSTSFTQGLEY--LDGHILESTGLYGFSKIRVSDLTTGQ 79 (262)
T ss_pred EEEeccCchhhhhcceee--eCCEEEEeccccccceeEEEeccCce
Confidence 5666677644322 233 2567777766543 79999999873
No 470
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=72.49 E-value=26 Score=25.62 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=25.6
Q ss_pred cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEE
Q 011709 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG 342 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tg 342 (479)
.+|.+..||.++++ ...+...-.--+.|++++ ++.+++.+
T Consensus 35 ~~GRll~ydp~t~~---~~vl~~~L~fpNGVals~-d~~~vlv~ 74 (89)
T PF03088_consen 35 PTGRLLRYDPSTKE---TTVLLDGLYFPNGVALSP-DESFVLVA 74 (89)
T ss_dssp --EEEEEEETTTTE---EEEEEEEESSEEEEEE-T-TSSEEEEE
T ss_pred CCcCEEEEECCCCe---EEEehhCCCccCeEEEcC-CCCEEEEE
Confidence 46889999999987 223323334678999999 77655544
No 471
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=72.38 E-value=1.5e+02 Score=32.06 Aligned_cols=72 Identities=10% Similarity=0.115 Sum_probs=36.2
Q ss_pred eEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeee--ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecC
Q 011709 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~ 354 (479)
|.-..+-.+. .+|.++..||.+.-|-+........... .-...++.=-.|+......+++.+ |+-.-+|--+
T Consensus 586 Il~~~~e~d~-~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n 659 (1096)
T KOG1897|consen 586 ILLTTFEGDI-HYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSN 659 (1096)
T ss_pred eeeEEeeccc-eEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecC
Confidence 3334444444 6899999999987665544331111111 112344444455553444555444 4444455444
No 472
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=71.67 E-value=84 Score=28.96 Aligned_cols=121 Identities=11% Similarity=0.130 Sum_probs=72.9
Q ss_pred eEEEEEeeCCCcEEEEEecCCeEEEEeCCCC-----CCCceeeecc-----CCCCeEEEEecCCCC------------cE
Q 011709 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVG-----TSPVIKVEKA-----HDADLHCVDWNPLDD------------NL 338 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~-----~~~~v~~l~~sp~~~------------~~ 338 (479)
-..|+++|.+ .+.++...-+...+||.... ..+++-.... .....+.+.|+. .. ..
T Consensus 25 ~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 25 AWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred cceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 4689999988 56777777889999999721 1223333321 234577788875 22 23
Q ss_pred EEEEeCCCcEEEEecCCCCCCCCCCceeeec-CCCCcE-EEEEEecC--CCcEEEEEeCCCCEEEEeCCC
Q 011709 339 ILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAV-LCVQWSPD--KSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 339 l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~v-~~l~~~p~--~~~llas~s~Dg~v~iwd~~~ 404 (479)
++.+++||+|.-|...-..... ......+. ...+.| ..+++... +.+|+|+-=..++|.|+|-+-
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~-~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRM-TRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred EEEEeCCceEEeecCcCCcccc-cccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 6788999999999854311000 01112222 122444 34565543 566776666689999999654
No 473
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=71.38 E-value=14 Score=20.07 Aligned_cols=26 Identities=8% Similarity=0.325 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCCcEEEEEeCCCcEEEEe
Q 011709 324 ADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (479)
Q Consensus 324 ~~v~~l~~sp~~~~~l~tgs~dg~I~iwd 352 (479)
..|.+++..+ .+++.+.+-+.+|+|.
T Consensus 2 E~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence 3578888865 7999999999999973
No 474
>PRK13684 Ycf48-like protein; Provisional
Probab=71.18 E-value=94 Score=29.35 Aligned_cols=110 Identities=15% Similarity=0.232 Sum_probs=59.1
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEE-EeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLIL-WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~ 356 (479)
...+.++.+.+++ .+ +..+..|.+.. +|-.... -......-...++++.+.+ ++..+++| ..|.+++=.....
T Consensus 172 ~g~~~~i~~~~~g-~~-v~~g~~G~i~~s~~~gg~t--W~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDG-KY-VAVSSRGNFYSTWEPGQTA--WTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCC-eE-EEEeCCceEEEEcCCCCCe--EEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCC
Confidence 4568889998877 44 44555565543 2222112 1222234456789999999 77776665 4677653222221
Q ss_pred CCCCCCCceeee-cCCCCcEEEEEEecCCCcEEEEEeCCCCEE
Q 011709 357 TSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (479)
Q Consensus 357 ~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~llas~s~Dg~v~ 398 (479)
. ..+.+..- ..-...+..+.+.|++. ++ .++.+|.+.
T Consensus 246 ~---sW~~~~~~~~~~~~~l~~v~~~~~~~-~~-~~G~~G~v~ 283 (334)
T PRK13684 246 E---SWSKPIIPEITNGYGYLDLAYRTPGE-IW-AGGGNGTLL 283 (334)
T ss_pred C---ccccccCCccccccceeeEEEcCCCC-EE-EEcCCCeEE
Confidence 0 01111110 01123578899999876 55 455577554
No 475
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=70.64 E-value=1e+02 Score=29.56 Aligned_cols=123 Identities=14% Similarity=0.132 Sum_probs=75.8
Q ss_pred CceEEEEEe--e-CCCcEEEEEecCCeEEEEeCCCC-CC----CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEE
Q 011709 279 DTVEDVTFC--P-SSAQEFCSVGDDSCLILWDARVG-TS----PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM 350 (479)
Q Consensus 279 ~~v~~l~~~--~-~~~~~l~s~~~dg~i~iwd~~~~-~~----~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~i 350 (479)
..++.+++. + ++..+++....+|.+..|-+... .. .+++.+. -...+..|.... ...+|+.|-.+.-|.-
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-~~sQ~EGCVVDD-e~g~LYvgEE~~GIW~ 233 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-VGSQPEGCVVDD-ETGRLYVGEEDVGIWR 233 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEET-TTTEEEEEETTTEEEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-CCCcceEEEEec-ccCCEEEecCccEEEE
Confidence 346777764 3 35456777888999988877532 21 2345553 345788899987 6778999999988888
Q ss_pred EecCCCCCCCCCCceeeecC--CCCcEEEEEEec--CC-CcEEEEEeCCCCEEEEeCCC
Q 011709 351 FDRRNLTSNGVGSPINKFEG--HSAAVLCVQWSP--DK-SSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p--~~-~~llas~s~Dg~v~iwd~~~ 404 (479)
|+.+.... ..+..+....+ ...-|-.|+.-. ++ .|||||.-.+++..|||.+.
T Consensus 234 y~Aep~~~-~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 234 YDAEPEGG-NDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EESSCCC--S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EecCCCCC-CcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 88764221 11233333322 345677777643 33 46777777789999999875
No 476
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=70.51 E-value=1.5e+02 Score=31.28 Aligned_cols=72 Identities=25% Similarity=0.438 Sum_probs=44.0
Q ss_pred eEEEEecCCCCcEEEEEeCCC-----cEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEE
Q 011709 326 LHCVDWNPLDDNLILTGSADN-----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 400 (479)
Q Consensus 326 v~~l~~sp~~~~~l~tgs~dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iw 400 (479)
-..++|-| .|..++|-+.|| .|..+..+.... |.+- .-.+-...+..++|+-... ++|.+ ....+++|
T Consensus 249 e~~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrH---Gef~-lr~~~dEk~~~~~wn~~s~-vlav~-~~n~~~lw 321 (1243)
T COG5290 249 EHQLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRH---GEFD-LRVGCDEKAFLENWNLLST-VLAVA-EGNLLKLW 321 (1243)
T ss_pred hhcccccc-CCceeeeeccCCCCCcceEEEEccCCccc---CCcc-ccCCchhhhhhhhhhHHHH-HHHHh-hcceEEEE
Confidence 34589999 899999987665 355665443221 1221 1123344567788887666 45333 45679999
Q ss_pred eCCC
Q 011709 401 DYEK 404 (479)
Q Consensus 401 d~~~ 404 (479)
-..+
T Consensus 322 ttkN 325 (1243)
T COG5290 322 TTKN 325 (1243)
T ss_pred Eccc
Confidence 8766
No 477
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=69.58 E-value=14 Score=37.80 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=38.5
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCCCCCCCcee-----------ee-----------cCCCCcEEEEEEec----CCCcEE
Q 011709 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-----------KF-----------EGHSAAVLCVQWSP----DKSSVF 388 (479)
Q Consensus 335 ~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~-----------~~-----------~~h~~~v~~l~~~p----~~~~ll 388 (479)
++..++.+..||.+........... +.... .+ ......+..+++++ +.. ++
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~--~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 233 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSD--GSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDT-FL 233 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----S--SS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTT-EE
T ss_pred CCCEEEEEECCCCeEEEECCcccCC--CCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCC-EE
Confidence 5577777788888887776642100 00000 00 01123455666666 444 57
Q ss_pred EEEeCCCCEEEEeCCCCCc
Q 011709 389 GSSAEDGLLNIWDYEKVGK 407 (479)
Q Consensus 389 as~s~Dg~v~iwd~~~~~~ 407 (479)
++.+.|+++|+||+.+...
T Consensus 234 ~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 234 FTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEEETTSEEEEEETTTTCE
T ss_pred EEEeCCCeEEEEECCCCeE
Confidence 7999999999999999543
No 478
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=69.19 E-value=88 Score=28.22 Aligned_cols=195 Identities=8% Similarity=0.010 Sum_probs=100.4
Q ss_pred CCCceeeeeecCCCCcEEEecCCC--cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCce
Q 011709 195 QDNAEFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG 272 (479)
Q Consensus 195 ~~~~v~~l~~s~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (479)
...-..++.|..+|.++-|.+.-| .|+.+|+.++......
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-------------------------------------- 84 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-------------------------------------- 84 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE--------------------------------------
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE--------------------------------------
Confidence 334456888877888778888766 7888998875432111
Q ss_pred eecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEe
Q 011709 273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (479)
Q Consensus 273 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd 352 (479)
.+. ..---..++...+ .++.-.=.++...+||..+.+ .+..+ ...+.=+.++. ++..|+.......|+.+|
T Consensus 85 ~l~-~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~--~~~~~-~y~~EGWGLt~---dg~~Li~SDGS~~L~~~d 155 (264)
T PF05096_consen 85 PLP-PRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLK--KIGTF-PYPGEGWGLTS---DGKRLIMSDGSSRLYFLD 155 (264)
T ss_dssp E-T-TT--EEEEEEETT--EEEEEESSSSEEEEEETTTTE--EEEEE-E-SSS--EEEE---CSSCEEEE-SSSEEEEE-
T ss_pred ECC-ccccceeEEEECC--EEEEEEecCCeEEEEccccce--EEEEE-ecCCcceEEEc---CCCEEEEECCccceEEEC
Confidence 111 1111234444432 455555678899999999876 45544 33445567774 556666666677899999
Q ss_pred cCCCCCCCCCCceeeecCC-----CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC-----CCCCee
Q 011709 353 RRNLTSNGVGSPINKFEGH-----SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-----NYPAGL 422 (479)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~l 422 (479)
..+. +...++.-. -..++-+.|. +|. ++|-.=....|..-|..++ ......+... .....
T Consensus 156 P~~f------~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~- 225 (264)
T PF05096_consen 156 PETF------KEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKS- 225 (264)
T ss_dssp TTT-------SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTS-
T ss_pred Cccc------ceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCC-eEEEEEEhhHhhhccccccc-
Confidence 8774 333333211 1234556665 232 5544444445555555552 2111000000 00000
Q ss_pred EEEeCCCCC-ceeEEEecCCCeeeecCC
Q 011709 423 FFQHAGHSP-SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 423 ~~~~~gh~~-~~~~~~sp~~~~l~~~~~ 449 (479)
...... ...+||.|....|..+|.
T Consensus 226 ---~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 226 ---RQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp ---T--TTS-EEEEEEETTTTEEEEEET
T ss_pred ---ccccCCeeEeEeEeCCCCEEEEEeC
Confidence 000022 489999998877777766
No 479
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=67.69 E-value=91 Score=27.83 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=30.8
Q ss_pred EEEeCCCCCCCceeeec-cCCCCeEEEEecCCCCcEEEEEeC-C--CcEEEEecCC
Q 011709 304 ILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSA-D--NSVRMFDRRN 355 (479)
Q Consensus 304 ~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~l~tgs~-d--g~I~iwd~~~ 355 (479)
.+||+.+++. +.+. .....+.+-++-| +|++|.+|+. | ..+++++...
T Consensus 49 ~~yD~~tn~~---rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~ 100 (243)
T PF07250_consen 49 VEYDPNTNTF---RPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCT 100 (243)
T ss_pred EEEecCCCcE---EeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCC
Confidence 4688888772 2221 2333344456778 8999999987 3 3588888654
No 480
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=67.51 E-value=2.2e+02 Score=32.07 Aligned_cols=17 Identities=6% Similarity=0.173 Sum_probs=13.2
Q ss_pred cCCCCceEEEEEeeCCC
Q 011709 275 NGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 275 ~~h~~~v~~l~~~~~~~ 291 (479)
..|-....+++.+|+|.
T Consensus 658 ~A~lnsp~alaVsPdg~ 674 (1899)
T KOG4659|consen 658 QAKLNSPYALAVSPDGD 674 (1899)
T ss_pred ccccCCcceEEECCCCc
Confidence 34666788999999994
No 481
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=66.63 E-value=1.1e+02 Score=28.52 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=34.0
Q ss_pred cEEEEEec-----CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC----cEEEEecCC
Q 011709 292 QEFCSVGD-----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----SVRMFDRRN 355 (479)
Q Consensus 292 ~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg----~I~iwd~~~ 355 (479)
.+++.|+. ...+..||+.+.++..+..+.... .....+..- ++.+.+.|+.++ .+.+||.++
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCC
Confidence 56666664 246888999887753332221111 111111122 567778887764 356788876
No 482
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=65.80 E-value=1.2e+02 Score=28.51 Aligned_cols=121 Identities=12% Similarity=0.166 Sum_probs=66.6
Q ss_pred ceEEEEEeeCCCcEEEEEecC------CeEEEEeCCCCCC------Ccee-------eeccCCCCeEEEEecCCCCcEEE
Q 011709 280 TVEDVTFCPSSAQEFCSVGDD------SCLILWDARVGTS------PVIK-------VEKAHDADLHCVDWNPLDDNLIL 340 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~------~~~~-------~~~~~~~~v~~l~~sp~~~~~l~ 340 (479)
...+|++.+++ .++++.-.+ ..|..+|.. +.. |... .....+..+-+|+++| ++..|+
T Consensus 86 D~Egi~~~~~g-~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~ 162 (326)
T PF13449_consen 86 DPEGIAVPPDG-SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLF 162 (326)
T ss_pred ChhHeEEecCC-CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEE
Confidence 46678886666 666665556 688888876 431 0000 1113456788999999 888666
Q ss_pred EEeCCC-------c-------EEEEecCCCCCC-CCCCceeeecC-----CCCcEEEEEEecCCCcEEEEEe----CCCC
Q 011709 341 TGSADN-------S-------VRMFDRRNLTSN-GVGSPINKFEG-----HSAAVLCVQWSPDKSSVFGSSA----EDGL 396 (479)
Q Consensus 341 tgs~dg-------~-------I~iwd~~~~~~~-~~~~~~~~~~~-----h~~~v~~l~~~p~~~~llas~s----~Dg~ 396 (479)
++.... . ++|+........ ...+....+.. ....|+.+.+-++++.++.=-+ ....
T Consensus 163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~ 242 (326)
T PF13449_consen 163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNY 242 (326)
T ss_pred EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccce
Confidence 554422 1 555554432110 00122233332 3567889999999984332222 2345
Q ss_pred EEEEeCC
Q 011709 397 LNIWDYE 403 (479)
Q Consensus 397 v~iwd~~ 403 (479)
++|+-+.
T Consensus 243 ~ri~~v~ 249 (326)
T PF13449_consen 243 KRIYRVD 249 (326)
T ss_pred EEEEEEE
Confidence 5555544
No 483
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=65.77 E-value=40 Score=24.62 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=30.6
Q ss_pred EeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEE
Q 011709 342 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (479)
Q Consensus 342 gs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~ 398 (479)
+..+|.+.-||..+ +.+..+-..-...+.|++++++..+|++=..-..|.
T Consensus 33 ~~~~GRll~ydp~t-------~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~ 82 (89)
T PF03088_consen 33 GRPTGRLLRYDPST-------KETTVLLDGLYFPNGVALSPDESFVLVAETGRYRIL 82 (89)
T ss_dssp T---EEEEEEETTT-------TEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred CCCCcCEEEEECCC-------CeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEE
Confidence 44567788888887 334333333446789999999998776665544443
No 484
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=65.20 E-value=68 Score=25.47 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=45.6
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC---C--CCcEEEecCCCc
Q 011709 145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---T--EPYVLSGGKDKS 219 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~---~--~~~l~s~s~dg~ 219 (479)
.-+|....+ .|++++.-|.|.|++.......... ....+..|.-.. .|++|+-.+ + ...|+.|+ ...
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~----~~~~i~~LNin~--~italaaG~l~~~~~~D~LliGt-~t~ 74 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR----QDSDISFLNINQ--EITALAAGRLKPDDGRDCLLIGT-QTS 74 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCcccccccc----ccCceeEEECCC--ceEEEEEEecCCCCCcCEEEEec-cce
Confidence 345555333 6888888899999998765322110 123334444433 367775443 2 34677777 567
Q ss_pred EEEEecCCC
Q 011709 220 VVLWSIQDH 228 (479)
Q Consensus 220 i~vwd~~~~ 228 (479)
|..||+...
T Consensus 75 llaYDV~~N 83 (136)
T PF14781_consen 75 LLAYDVENN 83 (136)
T ss_pred EEEEEcccC
Confidence 999999754
No 485
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=64.92 E-value=58 Score=31.92 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=25.3
Q ss_pred CCeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 324 ~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
..|.+++..+ ..+++++.+.+|.|.+||+..
T Consensus 190 ~~I~~v~~d~-~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDP-SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEET-TTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecC-CcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999 779999999999999999975
No 486
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=61.77 E-value=2.3e+02 Score=30.37 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=48.5
Q ss_pred CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCC----Ccee---eec------CCCCcEEEEEEecCCCcEEE
Q 011709 323 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG----SPIN---KFE------GHSAAVLCVQWSPDKSSVFG 389 (479)
Q Consensus 323 ~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~----~~~~---~~~------~h~~~v~~l~~~p~~~~lla 389 (479)
...|.+++... -+.+++..-.||+|.++|..+....... .... .+. .+...+..++|||.+.. ++
T Consensus 259 ~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~-~v 336 (753)
T PF11635_consen 259 NKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCS-LV 336 (753)
T ss_pred CCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccce-EE
Confidence 35677787776 6779999999999999999886321111 1111 110 11124456889999884 66
Q ss_pred EEeCCCCEE
Q 011709 390 SSAEDGLLN 398 (479)
Q Consensus 390 s~s~Dg~v~ 398 (479)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 777788866
No 487
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=61.08 E-value=82 Score=25.03 Aligned_cols=116 Identities=9% Similarity=0.112 Sum_probs=66.1
Q ss_pred eecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceE
Q 011709 203 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE 282 (479)
Q Consensus 203 ~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 282 (479)
.|......|+.++.-|+|.|.+.......... ....+..+. -...|+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~--------------------------------~~~~i~~LN-in~~it 51 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGR--------------------------------QDSDISFLN-INQEIT 51 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCcccccccc--------------------------------ccCceeEEE-CCCceE
Confidence 45555557888888899999987643221100 111122332 345677
Q ss_pred EEEEee----CCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCC--CcEEEEEeCCCcEEEEecCC
Q 011709 283 DVTFCP----SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 283 ~l~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~--~~~l~tgs~dg~I~iwd~~~ 355 (479)
+|+-.+ ++...|+.|+. ..|..||+..... + ..+.-...|+++.+-... ..-++..+.+..|.-||..-
T Consensus 52 alaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d--~-Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 52 ALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSD--L-FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred EEEEEecCCCCCcCEEEEecc-ceEEEEEcccCch--h-hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 776544 23345666654 5789999998773 2 233445778888773211 23344444467777777653
No 488
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=60.93 E-value=1.4e+02 Score=27.80 Aligned_cols=13 Identities=15% Similarity=0.511 Sum_probs=10.0
Q ss_pred CeEEEEeCCCCCC
Q 011709 301 SCLILWDARVGTS 313 (479)
Q Consensus 301 g~i~iwd~~~~~~ 313 (479)
..|.+||+.+.++
T Consensus 271 ~~v~~yd~~~~~W 283 (323)
T TIGR03548 271 RKILIYNVRTGKW 283 (323)
T ss_pred ceEEEEECCCCee
Confidence 3588999888774
No 489
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=60.26 E-value=20 Score=19.91 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=16.3
Q ss_pred cEEEEEeCCCcEEEEecCC
Q 011709 337 NLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 337 ~~l~tgs~dg~I~iwd~~~ 355 (479)
..+++++.+|.+..+|.++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~ 25 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKT 25 (33)
T ss_pred CEEEEEcCCCEEEEEEccc
Confidence 4678888999999999987
No 490
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=59.77 E-value=1e+02 Score=32.47 Aligned_cols=194 Identities=10% Similarity=0.045 Sum_probs=0.0
Q ss_pred CCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 207 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
+-..+..|+.++.|.++.-.......... .........+.++.+
T Consensus 546 ~~PTic~gtq~ssisissss~~s~ke~~~------------------------------------~~~spe~~~v~~l~~ 589 (925)
T KOG3522|consen 546 PHPTICLGTQTSSISISSSSLDSIKEVTS------------------------------------EPPSPEHESVKLLLF 589 (925)
T ss_pred CCCcccccCccceeEEeeccCCcccceec------------------------------------cCCCCchhhhhhhhc
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCC---CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCC
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGT---SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 363 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~ 363 (479)
++.. +..|.-||++-.|--.-.. .+..........+|.+.++.. -++.|+.+|.|.++...+... ..
T Consensus 590 ss~S---lgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~lPvrsla~~e----d~~was~gG~V~vi~~tt~~~---~~ 659 (925)
T KOG3522|consen 590 SSGS---LGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSLPVRSLAFQE----DFVWASEGGCVHVIPSTTFIR---SW 659 (925)
T ss_pred cccc---cccCccCCccccccCCCCCCCCCCCccccccCCccccchhhhh----ceeeeecCCceEEEechhccc---cc
Q ss_pred ceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC--ceeEEEecCC
Q 011709 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP--SSSIKFVLRE 441 (479)
Q Consensus 364 ~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~--~~~~~~sp~~ 441 (479)
.......|...|+++.....+ ++++-.....++.++..+....+...... ...+...+|.. +....|. .|
T Consensus 660 ~leahqee~~~Vthm~~~~~g--VwvafasG~~~rlfhtetl~hlqd~niaT-----~vt~~lP~~kllsv~~rl~c-~g 731 (925)
T KOG3522|consen 660 DLEAHQEEAHSVTHMLYLDNG--VWVAFASGDEERLFHTETLWHLQDSNIAT-----SVTVDLPFGKLLSVPGRLWC-QG 731 (925)
T ss_pred hhHHHHhhcceEEEEEeeCCc--eEEEEcCCCEEEEecccccCCccccccCc-----ceeecCCCcccccCCCcccc-cc
Q ss_pred CeeeecCCCcccc
Q 011709 442 SCLVDNNHGLSYA 454 (479)
Q Consensus 442 ~~l~~~~~~~~~~ 454 (479)
..++-++.++..+
T Consensus 732 l~~V~~~~~l~v~ 744 (925)
T KOG3522|consen 732 LLMVLTSLTLLVA 744 (925)
T ss_pred eeEEeccceeEEE
No 491
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=59.61 E-value=1.7e+02 Score=28.14 Aligned_cols=42 Identities=10% Similarity=0.000 Sum_probs=21.2
Q ss_pred CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC
Q 011709 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 344 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~ 344 (479)
..+.+||..+..+..+..+......-.++... ++.+.+.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~--~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK--GNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEE--CCEEEEEeee
Confidence 35889999887743322221111112233333 4566666664
No 492
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=58.19 E-value=2.4e+02 Score=29.39 Aligned_cols=30 Identities=3% Similarity=0.141 Sum_probs=26.7
Q ss_pred ceeeeeecCCCCcEEEecCCCcEEEEecCC
Q 011709 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQD 227 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~ 227 (479)
.|-++.|.++++.+++...+|.|.+||...
T Consensus 131 kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~ 160 (670)
T PF10395_consen 131 KVVGIKFSSDGKIIYVVLENGSIQIYDFSE 160 (670)
T ss_pred ceEEEEEecCCCEEEEEEcCCcEEEEeccc
Confidence 467999999999999999999999999943
No 493
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=56.87 E-value=27 Score=35.93 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=44.5
Q ss_pred CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEe
Q 011709 323 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 323 ~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd 401 (479)
...++++.-+| .+.-++.++.||+|++|+.-.... ..+.+ -..+-..+.|...| |+++..|+.+.-|.
T Consensus 14 ~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~q----ski~~---~~~p~~nlv~tnhg---l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQ----SKICE---EAKPKENLVFTNHG---LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecC-CCceEEEEecCCcEEEEeecccch----hhhhh---hcCCccceeeeccc---eEEEeccchhheee
Confidence 44577888889 999999999999999999865211 11222 22334456666555 34666677666665
No 494
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=56.08 E-value=1.4e+02 Score=26.02 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=36.0
Q ss_pred cEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEe
Q 011709 337 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 392 (479)
Q Consensus 337 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s 392 (479)
..|+.+...+.|.+|++.... .+++.+|..- +.|..+.++..|.++ +|--
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~----~~~~~~F~Tv-~~V~~l~y~~~GDYl-vTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE----CPLLCTFSTV-GRVLQLVYSEAGDYL-VTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC----CceeEEEcch-hheeEEEeccccceE-EEEE
Confidence 444444566789999998432 5677777644 789999999999985 4554
No 495
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=55.07 E-value=3e+02 Score=29.60 Aligned_cols=238 Identities=11% Similarity=0.107 Sum_probs=119.5
Q ss_pred EEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEec---C---CCCcEEEEEeCC
Q 011709 89 LSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIREL---P---QNTKIVATHTDS 162 (479)
Q Consensus 89 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~---p---~~~~~lat~s~d 162 (479)
+...++|+..+.|.+..++...-....... .........+.....-.+.-..+|..|+|. . ...++|++-...
T Consensus 29 i~A~asGesg~~L~L~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~ 107 (765)
T PF10214_consen 29 ILAFASGESGSVLRLSRLDEEEWSWGNNDD-ASLRVPTIDPELSGAWSIDDGSPIKQIKFATLSESFDEKSRWLAVRTET 107 (765)
T ss_pred EEEEecCCCCCeeEEEEecccccccccccc-cccccCCCCccccceeEcCCCCCeeEEEecccccccCCcCcEEEEEcCC
Confidence 344577888888888776532210000000 000000001111122233566789999988 2 133466666554
Q ss_pred CcEEEEECCCCCC---ccccCCCCCCCCcEEEeccC--CCceeeeeecCC-CCcEEEecCCCcEEEEecCCCccccccCC
Q 011709 163 PDVLIWDVEAQPN---RHAVLGATNSRPDLILTGHQ--DNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDP 236 (479)
Q Consensus 163 g~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~h~--~~~v~~l~~s~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 236 (479)
.+.|+...-... .......-...++..+..+. +.....++|+|. .+.||.....|.-.||++...........
T Consensus 108 -st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~ 186 (765)
T PF10214_consen 108 -STTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNL 186 (765)
T ss_pred -EEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcce
Confidence 677777322211 00000111223444444221 223568999996 45899999999999999932111100000
Q ss_pred cccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCce
Q 011709 237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 316 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 316 (479)
...... .+.+ +.|. . ....-..+.|.++. ..|+.++. ..+.++|+.+......
T Consensus 187 -------------~~~~~~-~gsi-~~d~---------~-e~s~w~rI~W~~~~-~~lLv~~r-~~l~~~d~~~~~~~~~ 239 (765)
T PF10214_consen 187 -------------RLSRNI-SGSI-IFDP---------E-ELSNWKRILWVSDS-NRLLVCNR-SKLMLIDFESNWQTEY 239 (765)
T ss_pred -------------eeccCC-Cccc-cCCC---------c-ccCcceeeEecCCC-CEEEEEcC-CceEEEECCCCCccch
Confidence 000000 0100 0010 1 11445678898776 34555544 5688999998763211
Q ss_pred eeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 011709 317 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (479)
Q Consensus 317 ~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~ 356 (479)
-........|..+.-+|.+..+++.-. ...|...|+...
T Consensus 240 l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 240 LVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred hccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 222345677889988884334444333 367888888763
No 496
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=54.00 E-value=80 Score=30.37 Aligned_cols=175 Identities=13% Similarity=0.222 Sum_probs=0.0
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCcc
Q 011709 151 QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT 230 (479)
Q Consensus 151 ~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~ 230 (479)
....+.+.++..++ ..|..... ........+..|.. +..+-+. +..+..-+.-+.|-+|+..+. .
T Consensus 192 ~~~~~~~~~s~~~~-l~W~~q~~---------~~~~~~~v~s~~~s--~~~~F~i--~~~l~~~s~~~~Igvw~~~t~-q 256 (465)
T KOG2714|consen 192 GDAGLLVAGSSSGS-LLWKIQEE---------GSNTVKGVFSLAVS--VDPLFFI--GTQLVALSSVGKIGVWHAVTQ-Q 256 (465)
T ss_pred cccccccceeecce-eeEeeccC---------CCcceEEEEeeccc--ccchhhh--hhhhhhccccccccccchhhh-c
Q ss_pred ccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE------ecCCeEE
Q 011709 231 SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV------GDDSCLI 304 (479)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~------~~dg~i~ 304 (479)
.....+ ..-......-.-+.|.+....++.+. ..++.|+
T Consensus 257 ~~d~~~-----------------------------------~s~~dsag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~ 301 (465)
T KOG2714|consen 257 AQDVQP-----------------------------------ISSYDSAGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIV 301 (465)
T ss_pred eeeeee-----------------------------------ccCccccCChhhhccccCceeEEEEeeccccccCCceEE
Q ss_pred EEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCC
Q 011709 305 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384 (479)
Q Consensus 305 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 384 (479)
+||.|... ++..|.- ++.|+..+.+++-|.-............++..|..+..
T Consensus 302 ~~d~Rd~n--------------~~~~W~~-----i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L~-------- 354 (465)
T KOG2714|consen 302 TEDFRDRN--------------TSGNWIE-----IAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGSPLG-------- 354 (465)
T ss_pred EeeccCCC--------------ccceEEE-----ecCCccccceEeeeccccccCCCCeEEEEEEecCCCcc--------
Q ss_pred CcEEEEEeCCCCEEEEeCCC
Q 011709 385 SSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 385 ~~llas~s~Dg~v~iwd~~~ 404 (479)
++-.+...+.+++|.+..
T Consensus 355 --~idv~~~~~~~~~~~~tr 372 (465)
T KOG2714|consen 355 --LIDVCSDGGHVRVWNSTR 372 (465)
T ss_pred --eeehhhhCCcceEEeecc
No 497
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=52.89 E-value=2e+02 Score=26.99 Aligned_cols=83 Identities=10% Similarity=0.137 Sum_probs=44.1
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCc------EEEEECCCCCCccccCCCCCCCCcEEEeccCCC-------ceeeeeecC
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPD------VLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-------AEFALAMCP 206 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~-------~v~~l~~s~ 206 (479)
-+.+..|.+.+ ++..+++-+++|. ++.+++........ . ........+....+. -.-+|++.+
T Consensus 19 ~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~ 94 (326)
T PF13449_consen 19 FGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIG--G-VTILDMIPLRDPDGQPFPKNGLDPEGIAVPP 94 (326)
T ss_pred cCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCcc--c-eEeccceeccCCCCCcCCcCCCChhHeEEec
Confidence 36788899987 4446666778887 66666654211000 0 000111111111111 112677767
Q ss_pred CCCcEEEecCC------CcEEEEecC
Q 011709 207 TEPYVLSGGKD------KSVVLWSIQ 226 (479)
Q Consensus 207 ~~~~l~s~s~d------g~i~vwd~~ 226 (479)
+|.++++.-.+ ..|..++..
T Consensus 95 ~g~~~is~E~~~~~~~~p~I~~~~~~ 120 (326)
T PF13449_consen 95 DGSFWISSEGGRTGGIPPRIRRFDLD 120 (326)
T ss_pred CCCEEEEeCCccCCCCCCEEEEECCC
Confidence 77777766556 677777765
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=52.63 E-value=3.5e+02 Score=29.69 Aligned_cols=121 Identities=9% Similarity=0.062 Sum_probs=65.1
Q ss_pred EEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCC
Q 011709 190 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 269 (479)
Q Consensus 190 ~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (479)
.+..++.-...-.+..|-..++++|- ...+++||+-........
T Consensus 927 ellh~T~~~~~v~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~----------------------------------- 970 (1205)
T KOG1898|consen 927 ELLHKTEIPGPVGAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKC----------------------------------- 970 (1205)
T ss_pred eeeeccCCCccceEEeccCCEEEEec-ccEEEEeeCChHHHHhhh-----------------------------------
Confidence 34444433333457777766666554 578999999654332111
Q ss_pred CceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeee-ccCCCCeEEEEecCCCCcEEEEEeCCCcE
Q 011709 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSV 348 (479)
Q Consensus 270 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~l~tgs~dg~I 348 (479)
.++.-...|..+.+.- ..++.|...-.|.++-.+....+++... ..-...|+++.+- |...+|.|..=|.+
T Consensus 971 ---e~k~~p~~Is~iqt~~---~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l--D~~tvagaDrfGNi 1042 (1205)
T KOG1898|consen 971 ---ELKFIPNRISSIQTYG---ARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL--DYDTVAGADRFGNI 1042 (1205)
T ss_pred ---hhccCceEEEEEeecc---eEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe--cCCceeeccccCcE
Confidence 1111244567776643 3456665555555554444332233222 1234556666665 55667777777777
Q ss_pred EEEecC
Q 011709 349 RMFDRR 354 (479)
Q Consensus 349 ~iwd~~ 354 (479)
.+..+-
T Consensus 1043 ~~vR~P 1048 (1205)
T KOG1898|consen 1043 AVVRIP 1048 (1205)
T ss_pred EEEECC
Confidence 666553
No 499
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=51.09 E-value=2.4e+02 Score=27.40 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=72.1
Q ss_pred eEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 011709 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~ 360 (479)
...+...+++ .+++.+.....++-||-....+ ..........++++.|.+ ++.+++++ .+|.+.. .........
T Consensus 241 f~~v~~~~dG-~~~~vg~~G~~~~s~d~G~~~W--~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDG-DYVAVSSRGNFYLTWEPGQPYW--QPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTEE 314 (398)
T ss_pred eeeEEEcCCC-CEEEEECCccEEEecCCCCcce--EEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCccc
Confidence 4445566666 4444443333333444322111 112223456789999998 77777666 5566543 222210000
Q ss_pred CCCceeeecC--CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEe
Q 011709 361 VGSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFV 438 (479)
Q Consensus 361 ~~~~~~~~~~--h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~s 438 (479)
......... -...++.+.|.+++. ++ .++.+|.+.... .. ++.-....... . -......+.|.
T Consensus 315 -~~~f~~~~~~~~~~~l~~v~~~~d~~-~~-a~G~~G~v~~s~-D~-G~tW~~~~~~~-~---------~~~~ly~v~f~ 379 (398)
T PLN00033 315 -DFDFEEADIKSRGFGILDVGYRSKKE-AW-AAGGSGILLRST-DG-GKSWKRDKGAD-N---------IAANLYSVKFF 379 (398)
T ss_pred -ccceeecccCCCCcceEEEEEcCCCc-EE-EEECCCcEEEeC-CC-CcceeEccccC-C---------CCcceeEEEEc
Confidence 002222222 123588999998877 55 455678666553 22 22211100000 0 01234688888
Q ss_pred cCCCeeeecCC
Q 011709 439 LRESCLVDNNH 449 (479)
Q Consensus 439 p~~~~l~~~~~ 449 (479)
+++.-++.+..
T Consensus 380 ~~~~g~~~G~~ 390 (398)
T PLN00033 380 DDKKGFVLGND 390 (398)
T ss_pred CCCceEEEeCC
Confidence 77776666655
No 500
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=50.59 E-value=1.9e+02 Score=31.24 Aligned_cols=85 Identities=19% Similarity=0.109 Sum_probs=57.0
Q ss_pred CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEE-EeCCC-----cEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT-GSADN-----SVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~t-gs~dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
.+.|.+-|...... ......+..+|.+-+||| ||+.|+- .+.++ .|++-|+++.. .-+.++.-...
T Consensus 328 ~~~L~~~D~dG~n~--~~ve~~~~~~i~sP~~SP-DG~~vAY~ts~e~~~g~s~vYv~~L~t~~-----~~~vkl~ve~a 399 (912)
T TIGR02171 328 TGNLAYIDYTKGAS--RAVEIEDTISVYHPDISP-DGKKVAFCTGIEGLPGKSSVYVRNLNASG-----SGLVKLPVENA 399 (912)
T ss_pred CCeEEEEecCCCCc--eEEEecCCCceecCcCCC-CCCEEEEEEeecCCCCCceEEEEehhccC-----CCceEeecccc
Confidence 35788888877662 223246788999999999 8888887 44444 58888998753 33444555566
Q ss_pred cEEEEEEecCCCcEEEEEe
Q 011709 374 AVLCVQWSPDKSSVFGSSA 392 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s 392 (479)
.|-.-...++|..+++-.+
T Consensus 400 aiprwrv~e~gdt~ivyv~ 418 (912)
T TIGR02171 400 AIPRWRVLENGDTVIVYVS 418 (912)
T ss_pred cccceEecCCCCeEEEEEc
Confidence 6766666777776554443
Done!