Query 011709
Match_columns 479
No_of_seqs 596 out of 4163
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 13:44:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xyi_A Probable histone-bindin 100.0 6.1E-55 2.1E-59 428.1 34.1 382 35-466 16-411 (430)
2 4gqb_B Methylosome protein 50; 100.0 3.3E-41 1.1E-45 319.5 32.4 253 134-466 76-332 (344)
3 3ow8_A WD repeat-containing pr 100.0 1.7E-40 5.7E-45 312.2 35.8 286 66-464 34-320 (321)
4 1vyh_C Platelet-activating fac 100.0 8.3E-41 2.9E-45 325.3 32.8 285 133-463 101-409 (410)
5 1got_B GT-beta; complex (GTP-b 100.0 4.2E-40 1.4E-44 312.4 34.3 284 133-462 48-340 (340)
6 3iz6_a 40S ribosomal protein R 100.0 1.9E-39 6.6E-44 312.6 34.8 291 133-466 59-376 (380)
7 4g56_B MGC81050 protein; prote 100.0 2E-39 6.9E-44 309.5 34.3 255 134-466 88-344 (357)
8 2ynn_A Coatomer subunit beta'; 100.0 2.1E-39 7.2E-44 302.5 32.7 249 134-465 7-259 (304)
9 2pm7_B Protein transport prote 100.0 6.3E-39 2.2E-43 298.2 35.0 261 135-464 4-284 (297)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.4E-39 1.2E-43 306.7 30.8 310 66-469 18-339 (345)
11 2pbi_B Guanine nucleotide-bind 100.0 7.8E-39 2.7E-43 305.2 32.8 286 133-462 57-354 (354)
12 3ow8_A WD repeat-containing pr 100.0 4.3E-39 1.5E-43 302.6 30.4 250 135-466 27-280 (321)
13 2ynn_A Coatomer subunit beta'; 100.0 9.7E-38 3.3E-42 291.3 37.4 274 66-449 15-292 (304)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.7E-38 9.2E-43 300.5 30.1 270 134-465 9-283 (345)
15 3frx_A Guanine nucleotide-bind 100.0 1.4E-37 4.7E-42 292.3 33.2 252 134-465 11-267 (319)
16 3frx_A Guanine nucleotide-bind 100.0 1.7E-37 5.7E-42 291.7 31.8 293 66-465 19-317 (319)
17 4gqb_B Methylosome protein 50; 100.0 5.1E-37 1.8E-41 290.7 34.5 250 64-405 82-332 (344)
18 2hes_X YDR267CP; beta-propelle 100.0 2.2E-37 7.4E-42 292.4 29.4 262 138-464 56-327 (330)
19 2pm9_A Protein WEB1, protein t 100.0 3.2E-38 1.1E-42 307.7 23.4 327 96-465 42-414 (416)
20 2xzm_R RACK1; ribosome, transl 100.0 1.3E-35 4.4E-40 281.9 40.0 286 94-465 44-340 (343)
21 3bg1_A Protein SEC13 homolog; 100.0 4.5E-38 1.6E-42 295.1 21.6 258 137-464 10-292 (316)
22 4aow_A Guanine nucleotide-bind 100.0 5.9E-37 2E-41 290.3 29.4 298 135-465 33-337 (340)
23 1nr0_A Actin interacting prote 100.0 1.2E-36 4.1E-41 311.3 32.5 294 139-465 17-355 (611)
24 2hes_X YDR267CP; beta-propelle 100.0 2.5E-36 8.4E-41 285.1 32.2 266 133-465 7-280 (330)
25 2j04_B YDR362CP, TAU91; beta p 100.0 1.8E-36 6.2E-41 301.4 31.9 327 63-464 132-516 (524)
26 1erj_A Transcriptional repress 100.0 7.9E-36 2.7E-40 288.7 35.2 249 138-465 121-389 (393)
27 4ery_A WD repeat-containing pr 100.0 1.4E-35 4.9E-40 277.7 35.8 281 66-463 25-310 (312)
28 4g56_B MGC81050 protein; prote 100.0 1.4E-36 4.8E-41 289.8 29.4 253 137-465 39-301 (357)
29 1nr0_A Actin interacting prote 100.0 2.3E-36 7.7E-41 309.3 32.5 254 134-405 53-356 (611)
30 1erj_A Transcriptional repress 100.0 5.1E-36 1.8E-40 290.0 33.2 271 133-465 57-341 (393)
31 1vyh_C Platelet-activating fac 100.0 3.6E-37 1.2E-41 299.7 24.0 278 66-403 110-410 (410)
32 4ery_A WD repeat-containing pr 100.0 4.8E-35 1.6E-39 274.1 36.9 249 133-466 16-269 (312)
33 1r5m_A SIR4-interacting protei 100.0 9.7E-36 3.3E-40 290.5 32.1 292 138-464 106-424 (425)
34 2xzm_R RACK1; ribosome, transl 100.0 2.2E-35 7.6E-40 280.2 32.9 257 133-465 14-285 (343)
35 2ymu_A WD-40 repeat protein; u 100.0 4.1E-35 1.4E-39 298.2 34.4 239 134-462 338-577 (577)
36 3i2n_A WD repeat-containing pr 100.0 9.3E-35 3.2E-39 277.0 34.1 306 65-465 19-353 (357)
37 3dm0_A Maltose-binding peripla 100.0 2E-34 6.8E-39 299.5 36.9 287 94-465 400-693 (694)
38 3dm0_A Maltose-binding peripla 100.0 1E-34 3.6E-39 301.6 33.8 254 134-465 376-632 (694)
39 3zwl_B Eukaryotic translation 100.0 2E-34 6.8E-39 275.7 33.1 295 128-467 20-348 (369)
40 3jrp_A Fusion protein of prote 100.0 1.1E-34 3.9E-39 278.6 31.3 261 135-464 6-286 (379)
41 4e54_B DNA damage-binding prot 100.0 1.4E-35 4.9E-40 290.9 25.5 289 135-465 114-430 (435)
42 3k26_A Polycomb protein EED; W 100.0 9.9E-35 3.4E-39 277.6 29.7 301 65-464 19-365 (366)
43 1sq9_A Antiviral protein SKI8; 100.0 4.2E-34 1.4E-38 276.8 34.2 295 66-465 18-395 (397)
44 3f3f_A Nucleoporin SEH1; struc 100.0 2.7E-34 9.2E-39 272.2 30.2 279 136-465 7-337 (351)
45 1gxr_A ESG1, transducin-like e 100.0 5.9E-34 2E-38 269.0 32.3 285 133-464 44-336 (337)
46 4h5i_A Guanine nucleotide-exch 100.0 1.2E-33 4E-38 270.4 32.4 317 60-469 10-347 (365)
47 4aez_A CDC20, WD repeat-contai 100.0 2.9E-33 9.8E-38 271.6 34.3 247 137-466 131-381 (401)
48 2ymu_A WD-40 repeat protein; u 100.0 4.2E-33 1.4E-37 283.4 37.0 239 135-463 298-537 (577)
49 3dwl_C Actin-related protein 2 100.0 1.6E-34 5.5E-39 277.8 25.2 303 65-463 12-377 (377)
50 1got_B GT-beta; complex (GTP-b 100.0 2.6E-34 8.7E-39 272.5 26.0 278 66-401 57-340 (340)
51 3iz6_a 40S ribosomal protein R 100.0 1.7E-34 5.9E-39 278.0 24.7 298 54-405 58-376 (380)
52 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-34 3.8E-39 288.5 23.7 265 133-466 126-429 (524)
53 1k8k_C P40, ARP2/3 complex 41 100.0 2.6E-33 8.9E-38 268.6 32.4 304 66-466 10-362 (372)
54 2aq5_A Coronin-1A; WD40 repeat 100.0 3.6E-33 1.2E-37 271.0 33.6 304 60-465 30-342 (402)
55 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-33 4.8E-38 263.7 28.1 280 133-466 11-297 (313)
56 2pbi_B Guanine nucleotide-bind 100.0 3.2E-33 1.1E-37 266.3 30.7 281 66-401 66-354 (354)
57 4gga_A P55CDC, cell division c 100.0 1.2E-32 4.1E-37 268.9 35.3 251 133-466 140-396 (420)
58 3ei3_B DNA damage-binding prot 100.0 1.1E-33 3.8E-38 272.7 26.8 286 133-465 66-382 (383)
59 3dwl_C Actin-related protein 2 100.0 7.9E-35 2.7E-39 280.0 18.6 256 138-463 9-279 (377)
60 1k8k_C P40, ARP2/3 complex 41 100.0 2.3E-33 7.7E-38 269.0 28.6 254 138-465 6-274 (372)
61 3dw8_B Serine/threonine-protei 100.0 1.7E-33 5.8E-38 277.0 26.3 285 137-465 25-373 (447)
62 2pm9_A Protein WEB1, protein t 100.0 1.2E-33 4.1E-38 275.3 24.7 287 139-466 11-338 (416)
63 4a11_B DNA excision repair pro 100.0 6.7E-32 2.3E-36 261.9 36.7 277 135-466 38-366 (408)
64 3vl1_A 26S proteasome regulato 100.0 4.1E-33 1.4E-37 272.0 28.1 241 142-465 98-365 (420)
65 3gre_A Serine/threonine-protei 100.0 4.3E-34 1.5E-38 280.6 19.6 300 137-462 60-437 (437)
66 3vl1_A 26S proteasome regulato 100.0 1.1E-32 3.9E-37 268.9 29.3 278 137-464 136-418 (420)
67 3k26_A Polycomb protein EED; W 100.0 5.6E-33 1.9E-37 265.4 26.4 256 138-465 16-318 (366)
68 2pm7_B Protein transport prote 100.0 8E-32 2.7E-36 250.3 33.3 253 66-405 11-286 (297)
69 1r5m_A SIR4-interacting protei 100.0 1.8E-32 6.3E-37 267.3 29.8 291 132-466 37-362 (425)
70 1sq9_A Antiviral protein SKI8; 100.0 7.3E-33 2.5E-37 268.1 26.7 254 136-466 12-323 (397)
71 3jro_A Fusion protein of prote 100.0 2.3E-33 8E-38 293.4 24.8 261 136-465 5-285 (753)
72 2aq5_A Coronin-1A; WD40 repeat 100.0 1E-32 3.6E-37 267.7 27.4 258 141-466 35-300 (402)
73 2oaj_A Protein SNI1; WD40 repe 100.0 2.2E-33 7.4E-38 297.8 24.5 289 137-463 148-659 (902)
74 3mmy_A MRNA export factor; mRN 100.0 2.2E-32 7.5E-37 261.4 27.9 242 133-449 32-335 (368)
75 4ggc_A P55CDC, cell division c 100.0 3.6E-31 1.2E-35 247.9 35.5 250 133-465 60-315 (318)
76 3bg1_A Protein SEC13 homolog; 100.0 3.9E-32 1.3E-36 254.7 26.3 255 66-404 15-293 (316)
77 4aez_A CDC20, WD repeat-contai 100.0 1.6E-31 5.6E-36 259.2 31.5 246 133-465 84-336 (401)
78 3v7d_B Cell division control p 100.0 1.8E-31 6.2E-36 264.0 32.2 264 134-465 156-421 (464)
79 3i2n_A WD repeat-containing pr 100.0 1.5E-31 5E-36 254.8 30.3 255 133-465 11-291 (357)
80 3mkq_A Coatomer beta'-subunit; 100.0 5.8E-32 2E-36 286.3 30.4 250 133-465 6-259 (814)
81 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-31 3.6E-36 263.4 29.4 281 137-467 130-416 (435)
82 3dw8_B Serine/threonine-protei 100.0 2.1E-31 7.3E-36 262.0 31.1 328 65-463 29-444 (447)
83 1yfq_A Cell cycle arrest prote 100.0 6.9E-32 2.4E-36 255.7 25.7 250 138-466 9-283 (342)
84 3v7d_B Cell division control p 100.0 1.1E-30 3.8E-35 258.3 35.1 246 133-468 114-384 (464)
85 1pgu_A Actin interacting prote 100.0 1.1E-31 3.7E-36 274.9 28.1 281 134-464 197-613 (615)
86 3sfz_A APAF-1, apoptotic pepti 100.0 5.1E-31 1.8E-35 291.5 34.6 255 133-465 608-913 (1249)
87 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.6E-31 9E-36 261.4 27.6 278 134-465 153-442 (445)
88 1yfq_A Cell cycle arrest prote 100.0 4.2E-30 1.4E-34 243.4 33.4 287 66-457 13-315 (342)
89 1gxr_A ESG1, transducin-like e 100.0 4.5E-31 1.5E-35 249.2 26.3 247 138-465 7-255 (337)
90 4gq1_A NUP37; propeller, trans 100.0 1.1E-31 3.9E-36 259.4 22.4 250 139-463 88-387 (393)
91 3mkq_A Coatomer beta'-subunit; 100.0 2.7E-30 9.2E-35 273.5 34.8 284 66-464 15-301 (814)
92 4h5i_A Guanine nucleotide-exch 100.0 5.6E-31 1.9E-35 251.8 25.9 204 138-404 131-343 (365)
93 4aow_A Guanine nucleotide-bind 100.0 2.4E-30 8E-35 244.8 29.8 291 58-405 34-338 (340)
94 3f3f_A Nucleoporin SEH1; struc 100.0 7.2E-30 2.5E-34 241.7 32.9 287 54-405 3-338 (351)
95 4a11_B DNA excision repair pro 100.0 8.1E-30 2.8E-34 247.2 33.8 284 43-405 24-366 (408)
96 3lrv_A PRE-mRNA-splicing facto 100.0 2.3E-31 7.9E-36 252.5 22.4 239 152-467 47-294 (343)
97 4e54_B DNA damage-binding prot 100.0 1.7E-31 5.9E-36 261.9 20.9 214 188-465 112-327 (435)
98 1pgu_A Actin interacting prote 100.0 4.7E-30 1.6E-34 262.7 31.0 283 138-465 16-328 (615)
99 3sfz_A APAF-1, apoptotic pepti 100.0 4.3E-30 1.5E-34 284.1 32.5 347 42-465 637-1034(1249)
100 4gga_A P55CDC, cell division c 100.0 2E-29 7E-34 246.0 32.0 211 133-405 182-396 (420)
101 3jrp_A Fusion protein of prote 100.0 2.3E-29 7.9E-34 241.5 31.2 254 66-404 13-287 (379)
102 2xyi_A Probable histone-bindin 100.0 5.8E-29 2E-33 243.5 34.2 228 133-404 174-410 (430)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.3E-29 1.5E-33 245.9 32.9 254 138-465 100-391 (450)
104 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.7E-30 3.3E-34 250.2 27.9 273 134-465 112-391 (445)
105 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.6E-29 5.5E-34 249.0 29.1 265 141-463 5-337 (450)
106 2j04_A TAU60, YPL007P, hypothe 100.0 7.1E-30 2.4E-34 248.2 25.7 243 138-463 13-295 (588)
107 3zwl_B Eukaryotic translation 100.0 4E-29 1.4E-33 238.8 30.6 276 66-404 34-346 (369)
108 3vu4_A KMHSV2; beta-propeller 100.0 7.2E-30 2.5E-34 243.3 25.2 290 136-465 15-336 (355)
109 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-29 4.1E-34 269.1 28.9 263 133-462 10-309 (902)
110 3jro_A Fusion protein of prote 100.0 4.1E-29 1.4E-33 261.2 30.7 256 66-406 11-287 (753)
111 3odt_A Protein DOA1; ubiquitin 100.0 9E-29 3.1E-33 231.0 28.5 258 96-405 36-297 (313)
112 3lrv_A PRE-mRNA-splicing facto 100.0 1.3E-28 4.3E-33 233.6 24.3 240 140-462 76-330 (343)
113 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-28 3.8E-33 241.9 24.5 241 134-405 167-415 (435)
114 3ei3_B DNA damage-binding prot 100.0 2.3E-28 8E-33 235.4 25.3 214 186-466 64-283 (383)
115 2w18_A PALB2, fancn, partner a 100.0 1.3E-27 4.5E-32 218.4 28.3 267 143-463 42-355 (356)
116 1l0q_A Surface layer protein; 100.0 8.5E-27 2.9E-31 225.0 32.1 246 134-465 25-275 (391)
117 4ggc_A P55CDC, cell division c 100.0 1.3E-26 4.4E-31 216.9 32.0 268 41-404 44-315 (318)
118 3mmy_A MRNA export factor; mRN 100.0 4E-27 1.4E-31 224.8 26.9 285 66-404 41-346 (368)
119 2w18_A PALB2, fancn, partner a 100.0 1.4E-27 4.8E-32 218.3 22.2 177 161-402 155-355 (356)
120 2j04_A TAU60, YPL007P, hypothe 100.0 2.7E-28 9.4E-33 237.1 18.5 247 137-449 82-350 (588)
121 4gq1_A NUP37; propeller, trans 100.0 7.6E-28 2.6E-32 232.5 19.1 255 94-403 106-388 (393)
122 3gre_A Serine/threonine-protei 100.0 5.9E-28 2E-32 236.9 17.8 213 186-465 53-292 (437)
123 3bws_A Protein LP49; two-domai 100.0 2.3E-26 8E-31 225.1 27.0 259 132-465 114-390 (433)
124 3bws_A Protein LP49; two-domai 100.0 9.5E-26 3.3E-30 220.8 30.0 242 137-465 166-432 (433)
125 1l0q_A Surface layer protein; 99.9 2.4E-25 8.4E-30 214.8 28.2 228 153-465 2-233 (391)
126 3vu4_A KMHSV2; beta-propeller 99.9 2.4E-25 8.1E-30 212.0 27.1 236 142-405 60-337 (355)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.1E-23 7.3E-28 202.6 29.1 245 134-464 111-386 (415)
128 2ojh_A Uncharacterized protein 99.9 3.4E-23 1.2E-27 191.0 27.0 242 134-450 35-292 (297)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.7E-22 1.9E-26 192.6 32.7 223 134-442 172-410 (415)
130 2oit_A Nucleoporin 214KDA; NH2 99.9 5.1E-23 1.7E-27 200.7 22.5 222 141-405 37-279 (434)
131 3hfq_A Uncharacterized protein 99.9 1.1E-21 3.7E-26 186.1 30.8 299 84-463 2-315 (347)
132 1ri6_A Putative isomerase YBHE 99.9 2.8E-21 9.6E-26 182.4 33.5 261 133-464 30-307 (343)
133 1nir_A Nitrite reductase; hemo 99.9 8E-21 2.7E-25 190.3 30.8 261 143-466 181-459 (543)
134 3u4y_A Uncharacterized protein 99.9 2.4E-20 8.2E-25 175.4 31.6 247 139-466 39-305 (331)
135 3scy_A Hypothetical bacterial 99.9 2.4E-19 8.3E-24 170.8 35.8 301 83-463 12-335 (361)
136 3u4y_A Uncharacterized protein 99.9 6.6E-20 2.3E-24 172.4 28.9 238 147-464 4-251 (331)
137 3vgz_A Uncharacterized protein 99.9 7.5E-20 2.6E-24 173.5 29.2 254 137-465 37-303 (353)
138 2ecf_A Dipeptidyl peptidase IV 99.9 1E-20 3.5E-25 198.0 24.2 244 140-463 36-365 (741)
139 2oit_A Nucleoporin 214KDA; NH2 99.9 3.7E-21 1.2E-25 187.6 18.8 224 199-465 39-278 (434)
140 3vgz_A Uncharacterized protein 99.9 1.4E-19 4.7E-24 171.7 28.0 237 134-449 82-333 (353)
141 1nir_A Nitrite reductase; hemo 99.9 1.4E-19 4.8E-24 181.2 28.2 233 147-465 144-402 (543)
142 1ri6_A Putative isomerase YBHE 99.9 3.7E-20 1.3E-24 174.7 21.8 246 152-464 4-261 (343)
143 1xfd_A DIP, dipeptidyl aminope 99.9 1.7E-20 5.8E-25 195.8 20.6 281 142-464 18-392 (723)
144 2ecf_A Dipeptidyl peptidase IV 99.9 1.8E-19 6.1E-24 188.6 27.3 282 141-462 109-456 (741)
145 2ojh_A Uncharacterized protein 99.8 1.4E-19 4.8E-24 166.6 22.5 228 158-465 17-258 (297)
146 2z3z_A Dipeptidyl aminopeptida 99.8 2.3E-19 7.9E-24 186.7 26.3 266 134-464 114-434 (706)
147 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.1E-18 2.1E-22 161.4 33.3 255 139-465 38-341 (365)
148 1jmx_B Amine dehydrogenase; ox 99.8 5.5E-19 1.9E-23 167.1 24.3 232 146-465 5-325 (349)
149 1pby_B Quinohemoprotein amine 99.8 6.7E-19 2.3E-23 165.6 24.6 236 142-466 35-311 (337)
150 3o4h_A Acylamino-acid-releasin 99.8 1.6E-19 5.4E-24 183.6 21.6 233 140-463 21-274 (582)
151 1k32_A Tricorn protease; prote 99.8 5.5E-19 1.9E-23 191.5 24.5 265 135-449 198-491 (1045)
152 1xfd_A DIP, dipeptidyl aminope 99.8 1.9E-18 6.5E-23 180.3 22.4 275 142-449 62-429 (723)
153 3hfq_A Uncharacterized protein 99.8 4E-17 1.4E-21 154.5 27.7 215 137-403 82-316 (347)
154 2z3z_A Dipeptidyl aminopeptida 99.8 3.2E-18 1.1E-22 178.0 21.5 243 140-449 81-375 (706)
155 3o4h_A Acylamino-acid-releasin 99.8 4E-17 1.4E-21 165.9 25.8 259 64-449 21-301 (582)
156 1k32_A Tricorn protease; prote 99.8 2E-17 6.7E-22 179.4 24.1 197 139-404 294-502 (1045)
157 1z68_A Fibroblast activation p 99.8 3.2E-18 1.1E-22 178.4 16.5 278 145-463 20-389 (719)
158 3fvz_A Peptidyl-glycine alpha- 99.8 5.9E-16 2E-20 145.3 30.0 248 141-466 24-323 (329)
159 3pe7_A Oligogalacturonate lyas 99.8 2E-17 6.9E-22 159.0 18.4 286 137-463 27-380 (388)
160 4a5s_A Dipeptidyl peptidase 4 99.7 2.5E-16 8.5E-21 164.4 25.5 246 141-463 17-351 (740)
161 1pby_B Quinohemoprotein amine 99.7 1.7E-16 6E-21 149.0 20.9 224 154-464 2-268 (337)
162 1z68_A Fibroblast activation p 99.7 2.4E-16 8.2E-21 164.3 22.3 284 142-463 61-441 (719)
163 3scy_A Hypothetical bacterial 99.7 1.7E-14 5.9E-19 137.1 33.0 215 139-403 98-336 (361)
164 1jmx_B Amine dehydrogenase; ox 99.7 1.5E-15 5.3E-20 143.3 25.5 198 142-405 44-326 (349)
165 1q7f_A NHL, brain tumor CG1071 99.7 1.1E-14 3.6E-19 133.8 28.9 240 138-465 27-280 (286)
166 1jof_A Carboxy-CIS,CIS-muconat 99.7 8.4E-15 2.9E-19 139.6 21.8 205 199-464 42-290 (365)
167 3azo_A Aminopeptidase; POP fam 99.7 7E-14 2.4E-18 144.2 30.0 193 145-403 81-322 (662)
168 3e5z_A Putative gluconolactona 99.6 1.6E-13 5.4E-18 126.6 27.9 231 137-449 24-276 (296)
169 3c5m_A Oligogalacturonate lyas 99.6 3.9E-15 1.3E-19 143.3 17.5 276 142-463 37-380 (396)
170 3azo_A Aminopeptidase; POP fam 99.6 1.8E-14 6.2E-19 148.6 23.5 240 136-448 19-312 (662)
171 2dg1_A DRP35, lactonase; beta 99.6 1.4E-14 4.8E-19 136.1 19.9 244 141-463 6-261 (333)
172 1rwi_B Serine/threonine-protei 99.6 1.7E-13 6E-18 124.4 26.0 239 142-466 25-265 (270)
173 4a5s_A Dipeptidyl peptidase 4 99.6 3.8E-14 1.3E-18 148.0 23.4 207 143-404 64-353 (740)
174 2dg1_A DRP35, lactonase; beta 99.6 1.2E-12 3.9E-17 122.9 30.9 236 136-449 40-299 (333)
175 1q7f_A NHL, brain tumor CG1071 99.6 4.7E-13 1.6E-17 122.7 26.1 198 139-404 75-280 (286)
176 2oiz_A Aromatic amine dehydrog 99.6 2.4E-13 8.2E-18 129.1 22.6 256 145-442 54-360 (361)
177 2xdw_A Prolyl endopeptidase; a 99.6 9E-13 3.1E-17 136.9 28.6 248 139-464 123-413 (710)
178 2gop_A Trilobed protease; beta 99.6 4E-13 1.4E-17 126.8 21.1 213 141-449 59-319 (347)
179 2bkl_A Prolyl endopeptidase; m 99.5 5.1E-13 1.7E-17 138.4 22.1 248 138-464 118-396 (695)
180 2xdw_A Prolyl endopeptidase; a 99.5 7.2E-12 2.5E-16 130.1 30.2 211 143-406 173-416 (710)
181 3pe7_A Oligogalacturonate lyas 99.5 6E-13 2E-17 127.6 20.4 210 187-464 22-272 (388)
182 3fvz_A Peptidyl-glycine alpha- 99.5 9.5E-12 3.3E-16 116.5 27.1 211 139-404 89-322 (329)
183 2z2n_A Virginiamycin B lyase; 99.5 5E-11 1.7E-15 109.6 31.6 239 138-463 12-253 (299)
184 2oiz_A Aromatic amine dehydrog 99.5 6.8E-12 2.3E-16 119.0 24.1 230 161-466 29-335 (361)
185 3dsm_A Uncharacterized protein 99.5 3.9E-12 1.3E-16 119.1 21.8 241 142-464 45-301 (328)
186 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.5E-11 1.2E-15 111.6 26.7 245 141-464 18-298 (314)
187 2gop_A Trilobed protease; beta 99.5 4.9E-12 1.7E-16 119.3 20.6 218 141-464 15-290 (347)
188 3dsm_A Uncharacterized protein 99.5 2E-11 7E-16 114.2 24.0 225 135-430 78-325 (328)
189 1xip_A Nucleoporin NUP159; bet 99.4 2.9E-12 9.9E-17 120.8 17.2 192 198-448 39-232 (388)
190 2bkl_A Prolyl endopeptidase; m 99.4 3.8E-11 1.3E-15 124.3 27.2 250 65-405 121-398 (695)
191 1xip_A Nucleoporin NUP159; bet 99.4 4.5E-12 1.5E-16 119.5 18.1 181 142-389 39-230 (388)
192 1qks_A Cytochrome CD1 nitrite 99.4 3E-10 1E-14 113.5 32.0 271 133-466 189-478 (567)
193 3hrp_A Uncharacterized protein 99.4 1.3E-10 4.3E-15 112.0 28.3 249 141-463 131-408 (409)
194 3no2_A Uncharacterized protein 99.4 3.9E-11 1.3E-15 109.1 23.2 216 153-447 5-230 (276)
195 1rwi_B Serine/threonine-protei 99.4 4.5E-11 1.5E-15 108.3 23.5 198 141-404 67-264 (270)
196 1qks_A Cytochrome CD1 nitrite 99.4 2.3E-10 8E-15 114.3 30.0 192 152-405 166-374 (567)
197 2z2n_A Virginiamycin B lyase; 99.4 1.4E-09 4.8E-14 99.8 32.6 226 139-449 55-285 (299)
198 3c5m_A Oligogalacturonate lyas 99.4 3E-12 1E-16 122.9 14.4 232 145-403 85-381 (396)
199 2qc5_A Streptogramin B lactona 99.4 1.3E-09 4.3E-14 100.1 31.0 238 140-464 19-259 (300)
200 1yr2_A Prolyl oligopeptidase; 99.4 5.8E-11 2E-15 123.9 23.9 250 139-464 161-440 (741)
201 3g4e_A Regucalcin; six bladed 99.4 3.7E-10 1.3E-14 103.9 26.5 229 143-449 15-261 (297)
202 3e5z_A Putative gluconolactona 99.4 1.1E-10 3.8E-15 107.4 22.2 201 138-404 66-286 (296)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.9E-10 6.6E-15 106.6 21.6 209 139-406 69-301 (314)
204 2ghs_A AGR_C_1268P; regucalcin 99.3 1.8E-09 6.2E-14 100.7 26.8 228 143-448 51-290 (326)
205 3dr2_A Exported gluconolactona 99.3 1.3E-09 4.4E-14 100.8 25.1 231 134-449 38-296 (305)
206 2mad_H Methylamine dehydrogena 99.3 7E-09 2.4E-13 98.4 30.5 237 145-466 70-351 (373)
207 3no2_A Uncharacterized protein 99.3 3.8E-10 1.3E-14 102.5 20.2 182 207-464 4-194 (276)
208 1yr2_A Prolyl oligopeptidase; 99.3 1.3E-09 4.3E-14 113.8 26.6 204 143-405 211-442 (741)
209 3iuj_A Prolyl endopeptidase; h 99.3 6.3E-10 2.2E-14 115.0 22.9 204 139-404 127-359 (693)
210 3g4e_A Regucalcin; six bladed 99.2 2.3E-09 7.8E-14 98.6 24.2 199 136-394 49-263 (297)
211 2qc5_A Streptogramin B lactona 99.2 1.6E-08 5.4E-13 92.7 29.8 226 140-447 61-289 (300)
212 3sjl_D Methylamine dehydrogena 99.2 1.4E-09 4.8E-14 102.1 19.7 231 145-405 82-364 (386)
213 2qe8_A Uncharacterized protein 99.2 1.5E-09 5.3E-14 102.0 19.9 250 141-449 17-310 (343)
214 2ghs_A AGR_C_1268P; regucalcin 99.2 1.9E-08 6.5E-13 93.8 25.8 193 138-395 87-294 (326)
215 3c75_H MADH, methylamine dehyd 99.1 7.5E-09 2.5E-13 99.0 22.1 239 145-466 122-403 (426)
216 2ece_A 462AA long hypothetical 99.1 3.9E-08 1.3E-12 93.0 26.2 234 150-448 93-399 (462)
217 3hrp_A Uncharacterized protein 99.1 1.4E-08 4.6E-13 97.8 22.4 192 199-462 133-351 (409)
218 2hz6_A Endoplasmic reticulum t 99.1 1.9E-10 6.5E-15 109.3 7.3 183 152-405 8-193 (369)
219 3iuj_A Prolyl endopeptidase; h 99.0 5.9E-08 2E-12 100.2 25.3 199 144-405 178-406 (693)
220 3sjl_D Methylamine dehydrogena 99.0 2E-08 6.7E-13 94.3 18.3 273 148-466 40-364 (386)
221 1mda_H Methylamine dehydrogena 99.0 4.5E-08 1.5E-12 92.0 20.7 230 145-405 69-347 (368)
222 2iwa_A Glutamine cyclotransfer 98.9 4.5E-07 1.5E-11 80.6 24.1 205 132-404 10-237 (266)
223 2mad_H Methylamine dehydrogena 98.9 2.7E-06 9.2E-11 80.5 29.8 200 143-405 127-351 (373)
224 3dr2_A Exported gluconolactona 98.9 2.3E-07 7.7E-12 85.5 20.6 192 199-463 47-265 (305)
225 1npe_A Nidogen, entactin; glyc 98.8 1.9E-05 6.5E-10 70.9 30.4 199 142-405 37-239 (267)
226 3nol_A Glutamine cyclotransfer 98.8 1.6E-06 5.5E-11 76.0 21.7 191 132-392 32-244 (262)
227 2ece_A 462AA long hypothetical 98.8 4.7E-07 1.6E-11 85.7 19.2 168 281-464 140-351 (462)
228 1npe_A Nidogen, entactin; glyc 98.8 1.9E-05 6.3E-10 71.0 29.3 156 199-404 38-198 (267)
229 1mda_H Methylamine dehydrogena 98.8 1.3E-07 4.4E-12 88.9 14.7 260 154-466 33-347 (368)
230 1yiq_A Quinohemoprotein alcoho 98.7 1.7E-06 5.9E-11 88.8 22.4 268 154-466 71-506 (689)
231 2qe8_A Uncharacterized protein 98.7 6.2E-07 2.1E-11 84.1 17.2 231 138-401 64-318 (343)
232 1kb0_A Quinohemoprotein alcoho 98.7 1.6E-06 5.4E-11 88.9 21.4 267 155-466 79-508 (677)
233 2fp8_A Strictosidine synthase; 98.7 1.7E-05 5.9E-10 73.4 26.5 243 142-466 20-314 (322)
234 2iwa_A Glutamine cyclotransfer 98.6 1E-05 3.4E-10 71.9 22.7 203 199-465 23-237 (266)
235 3mbr_X Glutamine cyclotransfer 98.6 1.5E-05 5.3E-10 69.2 23.2 192 132-393 10-224 (243)
236 3nok_A Glutaminyl cyclase; bet 98.6 9E-06 3.1E-10 71.3 21.4 188 132-392 44-254 (268)
237 2hz6_A Endoplasmic reticulum t 98.6 5.1E-09 1.8E-13 99.4 0.0 141 207-405 8-150 (369)
238 1yiq_A Quinohemoprotein alcoho 98.6 3.6E-06 1.2E-10 86.5 21.2 79 345-446 454-534 (689)
239 1kb0_A Quinohemoprotein alcoho 98.6 4.4E-06 1.5E-10 85.6 21.0 161 260-446 285-536 (677)
240 3v64_C Agrin; beta propeller, 98.6 0.00023 8E-09 66.5 31.1 198 141-404 34-234 (349)
241 1fwx_A Nitrous oxide reductase 98.6 1.3E-06 4.5E-11 85.6 15.8 140 301-450 254-408 (595)
242 3qqz_A Putative uncharacterize 98.5 8E-05 2.7E-09 65.7 25.5 205 140-401 26-250 (255)
243 3v64_C Agrin; beta propeller, 98.5 0.00024 8.1E-09 66.5 29.8 203 139-404 71-275 (349)
244 3v65_B Low-density lipoprotein 98.5 0.00015 5E-09 69.0 28.7 196 143-404 79-277 (386)
245 3v65_B Low-density lipoprotein 98.5 0.00011 3.6E-09 69.9 27.7 203 139-404 114-318 (386)
246 3q7m_A Lipoprotein YFGL, BAMB; 98.5 2.7E-05 9.1E-10 73.8 22.9 217 153-405 103-338 (376)
247 3c75_H MADH, methylamine dehyd 98.5 9.8E-06 3.4E-10 77.4 19.5 239 163-466 99-360 (426)
248 3nol_A Glutamine cyclotransfer 98.5 1.7E-05 5.7E-10 69.6 19.2 192 198-449 44-244 (262)
249 1ijq_A LDL receptor, low-densi 98.5 0.00061 2.1E-08 62.7 31.1 183 163-404 10-195 (316)
250 3hxj_A Pyrrolo-quinoline quino 98.4 3E-05 1E-09 71.7 21.3 214 154-463 108-322 (330)
251 3q7m_A Lipoprotein YFGL, BAMB; 98.4 5.5E-05 1.9E-09 71.6 23.0 222 153-405 53-297 (376)
252 1ijq_A LDL receptor, low-densi 98.4 0.0006 2E-08 62.7 29.1 211 138-405 27-239 (316)
253 2p4o_A Hypothetical protein; p 98.4 0.00033 1.1E-08 64.2 26.6 239 132-448 23-276 (306)
254 3nok_A Glutaminyl cyclase; bet 98.4 6.3E-05 2.2E-09 66.0 20.1 194 198-449 56-254 (268)
255 3p5b_L Low density lipoprotein 98.3 0.0015 5E-08 62.3 30.9 183 163-404 92-277 (400)
256 1k3i_A Galactose oxidase precu 98.3 3.9E-05 1.3E-09 78.5 20.6 252 145-464 190-496 (656)
257 3mbr_X Glutamine cyclotransfer 98.3 6.1E-05 2.1E-09 65.5 18.4 205 188-449 12-223 (243)
258 3p5b_L Low density lipoprotein 98.3 0.0011 3.6E-08 63.3 28.8 212 137-405 108-321 (400)
259 1kv9_A Type II quinohemoprotei 98.3 6.3E-05 2.2E-09 76.9 21.3 176 154-355 118-333 (668)
260 3sov_A LRP-6, low-density lipo 98.3 0.00096 3.3E-08 61.3 26.9 202 142-405 36-239 (318)
261 3hxj_A Pyrrolo-quinoline quino 98.3 4.7E-06 1.6E-10 77.3 11.4 209 155-402 32-242 (330)
262 2fp8_A Strictosidine synthase; 98.3 7.8E-05 2.7E-09 68.9 19.5 114 280-404 186-313 (322)
263 2xe4_A Oligopeptidase B; hydro 98.2 0.00022 7.6E-09 74.1 24.2 198 142-402 175-398 (751)
264 3m0c_C LDL receptor, low-densi 98.2 0.0028 9.6E-08 65.6 30.8 184 162-404 403-589 (791)
265 2p4o_A Hypothetical protein; p 98.2 0.00061 2.1E-08 62.3 23.3 194 199-463 34-240 (306)
266 3sov_A LRP-6, low-density lipo 98.2 0.0027 9.3E-08 58.3 27.5 183 162-404 12-197 (318)
267 3m0c_C LDL receptor, low-densi 98.1 0.0018 6E-08 67.1 28.1 209 137-405 420-633 (791)
268 2ad6_A Methanol dehydrogenase 98.1 0.00032 1.1E-08 70.2 21.7 53 345-405 443-495 (571)
269 1fwx_A Nitrous oxide reductase 98.1 7.7E-05 2.6E-09 73.2 16.2 169 280-465 135-361 (595)
270 3tc9_A Hypothetical hydrolase; 98.1 0.0015 5.2E-08 62.8 24.7 157 142-355 138-301 (430)
271 2xe4_A Oligopeptidase B; hydro 98.0 0.00023 8E-09 73.9 19.7 158 198-404 175-354 (751)
272 4hw6_A Hypothetical protein, I 98.0 0.0026 8.8E-08 61.3 25.3 197 142-402 140-372 (433)
273 4a2l_A BT_4663, two-component 97.9 0.016 5.6E-07 60.5 31.6 205 141-404 263-480 (795)
274 1k3i_A Galactose oxidase precu 97.9 0.001 3.6E-08 67.9 21.7 242 145-449 247-530 (656)
275 1n7d_A LDL receptor, low-densi 97.9 0.00011 3.6E-09 75.5 14.2 207 141-404 406-614 (699)
276 1n7d_A LDL receptor, low-densi 97.9 0.00016 5.5E-09 74.2 15.4 161 199-404 408-571 (699)
277 4a2l_A BT_4663, two-component 97.9 0.0064 2.2E-07 63.6 28.0 235 141-451 357-607 (795)
278 3qqz_A Putative uncharacterize 97.9 0.0067 2.3E-07 53.3 23.0 196 193-449 24-242 (255)
279 4a0p_A LRP6, LRP-6, low-densit 97.9 0.022 7.4E-07 57.5 29.8 183 161-404 13-197 (628)
280 1kv9_A Type II quinohemoprotei 97.9 0.00094 3.2E-08 68.3 20.1 53 345-405 437-489 (668)
281 1w6s_A Methanol dehydrogenase 97.9 0.004 1.4E-07 62.4 23.8 58 301-368 278-349 (599)
282 2ad6_A Methanol dehydrogenase 97.8 0.005 1.7E-07 61.6 23.9 58 301-368 272-342 (571)
283 1w6s_A Methanol dehydrogenase 97.8 0.0037 1.3E-07 62.6 21.7 53 345-405 452-504 (599)
284 2p9w_A MAL S 1 allergenic prot 97.7 0.0012 4.1E-08 59.9 16.1 161 200-404 16-215 (334)
285 3amr_A 3-phytase; beta-propell 97.7 0.024 8.3E-07 51.9 24.7 123 279-404 128-263 (355)
286 2p9w_A MAL S 1 allergenic prot 97.7 0.0028 9.6E-08 57.5 18.4 210 144-401 16-262 (334)
287 3v9f_A Two-component system se 97.7 0.021 7.3E-07 59.5 27.9 231 141-451 363-604 (781)
288 4hw6_A Hypothetical protein, I 97.7 0.0055 1.9E-07 58.9 21.6 156 199-404 141-304 (433)
289 3kya_A Putative phosphatase; s 97.7 0.021 7.2E-07 55.3 25.0 263 142-466 140-476 (496)
290 3tc9_A Hypothetical hydrolase; 97.7 0.0015 5.2E-08 62.8 17.0 156 280-463 138-299 (430)
291 1flg_A Protein (quinoprotein e 97.7 0.021 7.3E-07 57.1 25.5 51 301-355 291-355 (582)
292 3s94_A LRP-6, low-density lipo 97.6 0.02 6.8E-07 57.7 25.3 203 141-406 40-245 (619)
293 1flg_A Protein (quinoprotein e 97.6 0.0064 2.2E-07 60.9 21.2 79 345-446 465-545 (582)
294 4a0p_A LRP6, LRP-6, low-densit 97.6 0.073 2.5E-06 53.7 28.4 200 141-405 37-238 (628)
295 3s94_A LRP-6, low-density lipo 97.6 0.046 1.6E-06 55.1 26.8 158 199-404 42-202 (619)
296 3v9f_A Two-component system se 97.4 0.049 1.7E-06 56.8 25.8 205 141-404 313-524 (781)
297 3kya_A Putative phosphatase; s 97.4 0.0062 2.1E-07 59.0 16.5 173 280-462 140-338 (496)
298 2xbg_A YCF48-like protein; pho 97.3 0.1 3.6E-06 47.8 23.4 196 139-402 120-320 (327)
299 3amr_A 3-phytase; beta-propell 97.3 0.054 1.9E-06 49.6 20.6 167 279-464 68-262 (355)
300 2ism_A Putative oxidoreductase 97.2 0.11 3.6E-06 48.3 22.5 244 142-449 32-334 (352)
301 3pbp_A Nucleoporin NUP82; beta 97.1 0.086 3E-06 49.4 20.3 162 152-351 31-208 (452)
302 3sre_A PON1, serum paraoxonase 97.1 0.13 4.4E-06 47.6 21.4 111 279-401 165-295 (355)
303 3sre_A PON1, serum paraoxonase 96.9 0.16 5.5E-06 46.9 20.7 146 280-447 113-284 (355)
304 2vpj_A Kelch-like protein 12; 96.9 0.24 8.2E-06 44.5 22.0 103 292-404 114-231 (301)
305 2xn4_A Kelch-like protein 2; s 96.9 0.25 8.4E-06 44.5 21.4 103 292-404 110-229 (302)
306 2xbg_A YCF48-like protein; pho 96.7 0.33 1.1E-05 44.4 26.8 106 280-401 123-231 (327)
307 3pbp_A Nucleoporin NUP82; beta 96.7 0.33 1.1E-05 45.6 20.7 159 287-461 29-208 (452)
308 1zgk_A Kelch-like ECH-associat 96.6 0.3 1E-05 44.1 19.9 103 292-404 123-240 (308)
309 3ei3_A DNA damage-binding prot 96.6 1.1 3.6E-05 48.7 26.7 80 135-226 548-635 (1158)
310 3a9g_A Putative uncharacterize 96.6 0.47 1.6E-05 43.9 25.6 249 141-448 29-330 (354)
311 2vpj_A Kelch-like protein 12; 96.4 0.19 6.5E-06 45.2 17.5 105 289-404 159-278 (301)
312 2ism_A Putative oxidoreductase 96.4 0.08 2.7E-06 49.2 14.8 159 278-447 30-219 (352)
313 2g8s_A Glucose/sorbosone dehyd 96.2 0.8 2.7E-05 42.4 22.1 28 199-226 20-47 (353)
314 3das_A Putative oxidoreductase 96.1 0.39 1.3E-05 44.2 17.5 165 273-446 26-218 (347)
315 3a9g_A Putative uncharacterize 96.1 0.21 7.3E-06 46.3 16.1 156 278-446 28-214 (354)
316 1cru_A Protein (soluble quinop 96.1 0.44 1.5E-05 45.9 18.7 113 278-393 26-163 (454)
317 2xn4_A Kelch-like protein 2; s 96.1 0.2 6.8E-06 45.1 15.6 103 292-404 157-276 (302)
318 3ii7_A Kelch-like protein 7; p 96.0 0.81 2.8E-05 41.1 20.5 103 292-404 103-225 (306)
319 3ii7_A Kelch-like protein 7; p 96.0 0.26 8.9E-06 44.4 16.0 103 292-404 151-272 (306)
320 1cru_A Protein (soluble quinop 95.5 0.89 3.1E-05 43.7 18.2 113 199-344 29-163 (454)
321 2xzh_A Clathrin heavy chain 1; 95.4 1.4 4.9E-05 39.7 23.0 208 134-404 100-332 (365)
322 1zgk_A Kelch-like ECH-associat 95.2 0.47 1.6E-05 42.8 14.6 103 292-404 170-287 (308)
323 1tl2_A L10, protein (tachylect 95.1 0.4 1.4E-05 40.6 12.4 63 281-349 90-157 (236)
324 4asc_A Kelch repeat and BTB do 95.1 1.8 6.3E-05 39.0 21.9 103 292-404 100-221 (315)
325 2xzh_A Clathrin heavy chain 1; 94.8 2.2 7.4E-05 38.6 27.7 196 149-405 75-291 (365)
326 1bpo_A Protein (clathrin); cla 94.6 3 0.0001 39.3 23.9 207 135-404 100-331 (494)
327 1xi4_A Clathrin heavy chain; a 94.6 3.1 0.00011 45.4 20.2 235 149-449 74-330 (1630)
328 2g8s_A Glucose/sorbosone dehyd 94.4 3 0.0001 38.4 23.9 72 364-448 263-341 (353)
329 3ei3_A DNA damage-binding prot 94.1 5 0.00017 43.5 21.0 203 141-401 829-1059(1158)
330 3das_A Putative oxidoreductase 94.1 3.5 0.00012 37.8 26.9 253 140-449 31-327 (347)
331 4asc_A Kelch repeat and BTB do 94.0 1.3 4.4E-05 40.0 14.5 61 292-355 150-221 (315)
332 1tl2_A L10, protein (tachylect 93.9 0.57 2E-05 39.7 10.6 107 280-398 42-157 (236)
333 2woz_A Kelch repeat and BTB do 93.5 1.9 6.6E-05 38.9 14.8 63 289-355 158-231 (318)
334 1bpo_A Protein (clathrin); cla 93.5 5.1 0.00018 37.8 29.0 196 149-405 74-290 (494)
335 2woz_A Kelch repeat and BTB do 93.5 4.2 0.00014 36.6 18.9 103 292-404 111-231 (318)
336 2uvk_A YJHT; unknown function, 93.0 5.3 0.00018 36.6 18.1 51 301-353 168-224 (357)
337 1xi4_A Clathrin heavy chain; a 92.5 5.3 0.00018 43.7 17.6 204 201-466 70-290 (1630)
338 2wg3_C Hedgehog-interacting pr 92.5 7.8 0.00027 37.1 18.3 157 280-440 15-227 (463)
339 2zwa_A Leucine carboxyl methyl 92.4 3.2 0.00011 42.3 15.8 66 289-355 500-577 (695)
340 3s25_A Hypothetical 7-bladed b 91.6 6 0.0002 35.5 15.0 101 285-404 59-176 (302)
341 2zwa_A Leucine carboxyl methyl 91.4 9.3 0.00032 38.9 17.9 110 289-405 451-578 (695)
342 3b7f_A Glycosyl hydrolase, BNR 89.0 14 0.0005 34.2 20.6 72 279-350 115-203 (394)
343 3ott_A Two-component system se 85.8 34 0.0012 35.0 21.9 192 141-404 63-260 (758)
344 2uvk_A YJHT; unknown function, 84.6 16 0.00054 33.3 13.4 51 302-355 286-342 (357)
345 2wg3_C Hedgehog-interacting pr 84.4 10 0.00035 36.3 12.1 118 324-450 14-159 (463)
346 2be1_A Serine/threonine-protei 83.3 26 0.0009 31.8 16.9 59 292-352 112-181 (339)
347 3s25_A Hypothetical 7-bladed b 82.7 26 0.00089 31.2 19.0 102 285-404 110-216 (302)
348 1sqj_A OXG-RCBH, oligoxylogluc 82.3 49 0.0017 34.1 17.8 30 140-169 14-43 (789)
349 4gq2_M Nucleoporin NUP120; bet 81.4 32 0.0011 36.4 15.4 38 324-368 236-273 (950)
350 3b7f_A Glycosyl hydrolase, BNR 77.5 44 0.0015 30.8 19.7 68 279-346 177-254 (394)
351 3sbq_A Nitrous-oxide reductase 73.2 16 0.00054 35.7 9.2 98 302-404 299-408 (638)
352 4gq2_M Nucleoporin NUP120; bet 71.4 49 0.0017 35.0 13.5 32 280-312 237-268 (950)
353 2be1_A Serine/threonine-protei 62.1 28 0.00096 31.6 8.2 65 298-369 64-138 (339)
354 3q6k_A 43.2 kDa salivary prote 59.7 1.1E+02 0.0037 28.2 20.0 122 279-404 152-306 (381)
355 3zwu_A Alkaline phosphatase PH 47.6 54 0.0019 32.4 8.1 59 326-391 478-549 (592)
356 4hvt_A Ritya.17583.B, post-pro 47.0 2.4E+02 0.0083 28.5 17.9 127 301-441 216-361 (711)
357 1sqj_A OXG-RCBH, oligoxylogluc 45.5 1.2E+02 0.004 31.3 10.7 67 278-344 14-84 (789)
358 3sbq_A Nitrous-oxide reductase 45.2 66 0.0023 31.5 7.9 75 279-355 323-408 (638)
359 3q6k_A 43.2 kDa salivary prote 43.1 2E+02 0.0069 26.4 16.3 98 302-403 124-252 (381)
360 3zwu_A Alkaline phosphatase PH 41.8 71 0.0024 31.5 7.9 29 186-214 520-548 (592)
361 3ott_A Two-component system se 41.0 3E+02 0.01 27.8 26.8 105 280-401 192-304 (758)
362 4a9v_A PHOX; hydrolase, beta-p 39.9 1.2E+02 0.0041 29.7 9.0 65 324-395 476-553 (592)
363 4fhn_B Nucleoporin NUP120; pro 39.7 37 0.0013 36.8 6.1 34 198-231 239-272 (1139)
364 2cn3_A Xyloglucanase, beta-1,4 38.1 1.6E+02 0.0054 30.0 10.2 64 280-343 24-91 (737)
365 3a0f_A Xyloglucanase; beta-pro 36.4 3.6E+02 0.012 27.4 16.2 32 137-168 17-48 (763)
366 4fhn_B Nucleoporin NUP120; pro 35.2 54 0.0019 35.5 6.5 37 325-368 239-275 (1139)
367 3f7f_A Nucleoporin NUP120; nuc 30.8 57 0.0019 33.0 5.2 28 325-355 223-250 (729)
368 4a9v_A PHOX; hydrolase, beta-p 29.2 1.8E+02 0.0062 28.5 8.3 28 187-214 521-548 (592)
369 2cn3_A Xyloglucanase, beta-1,4 24.9 5.5E+02 0.019 25.9 15.1 67 279-345 72-153 (737)
370 3uc1_A DNA gyrase subunit A; D 24.1 3.8E+02 0.013 23.8 21.0 176 141-355 95-279 (327)
371 3f7f_A Nucleoporin NUP120; nuc 21.7 1E+02 0.0035 31.1 5.1 31 279-312 222-252 (729)
No 1
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=6.1e-55 Score=428.06 Aligned_cols=382 Identities=31% Similarity=0.589 Sum_probs=300.1
Q ss_pred hcccccchhhhhccccchhhhhhhhccccccceeeEEecCCcccC--CCcceEEEEEEEeeCCCCCceEEEEEEEecCcc
Q 011709 35 AHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQA--TYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPR 112 (479)
Q Consensus 35 ~~~~~~~~~~~~w~~~~~~~y~~~~~~~l~wpsl~~~w~p~~~~~--~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 112 (479)
.+++.++|+|++||||+|+||+++++|.|.||+|+++|+|..... .....+++++||++.+ +.|.|+|+.+.++...
T Consensus 16 ~~~~~~~~~~~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~-~~n~i~i~~~~lp~~~ 94 (430)
T 2xyi_A 16 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD-EQNHLLIASVQLPSED 94 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSS-SCEEEEEEEEEEC---
T ss_pred hhhhhhhHHHhhHhhCChHHHHHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCC-CCCEEEEEEEECCCCc
Confidence 457889999999999999999999999999999999999986432 1223699999999988 9999999998865331
Q ss_pred hhhhhcccccCcc--------cCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCC
Q 011709 113 VAAAEHISQFNEE--------ARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATN 184 (479)
Q Consensus 113 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~ 184 (479)
.......++++ ...+.++..+.+.|.+.|++++|+|+++.+||+++.||.|+|||+.+...... ....
T Consensus 95 --~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~ 170 (430)
T 2xyi_A 95 --AQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGE 170 (430)
T ss_dssp -------------------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCC
T ss_pred --cccccccccccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--cccc
Confidence 11111112221 23456677888999999999999996688999999999999999986422211 0112
Q ss_pred CCCcEEEeccCCCceeeeeecCCCC-cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCC
Q 011709 185 SRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA 263 (479)
Q Consensus 185 ~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (479)
..+...+.+|.. .|++++|+|++. +|++|+.||.|++||+.......
T Consensus 171 ~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------------------------------- 218 (430)
T 2xyi_A 171 CQPDLRLRGHQK-EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH------------------------------- 218 (430)
T ss_dssp CCCSEEEECCSS-CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGG-------------------------------
T ss_pred CCCcEEecCCCC-CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCC-------------------------------
Confidence 467788999997 589999999988 99999999999999997632110
Q ss_pred CCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCC-CCceeeeccCCCCeEEEEecCCCCcEEEEE
Q 011709 264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTG 342 (479)
Q Consensus 264 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~l~tg 342 (479)
....+...+.+|...|.+++|+|++..+|++++.||.|++||++++. ......+..|...|++++|+|....+|++|
T Consensus 219 --~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg 296 (430)
T 2xyi_A 219 --RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296 (430)
T ss_dssp --GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred --ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEE
Confidence 00011256678999999999999666899999999999999999873 124556678999999999999444589999
Q ss_pred eCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCee
Q 011709 343 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL 422 (479)
Q Consensus 343 s~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l 422 (479)
+.||.|++||++.. ..++..+.+|...|++++|+|+++.+|++++.||.|+|||++..+..+..... ...++++
T Consensus 297 ~~dg~v~vwd~~~~-----~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~ 370 (430)
T 2xyi_A 297 SADKTVALWDLRNL-----KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA-EDGPPEL 370 (430)
T ss_dssp ETTSEEEEEETTCT-----TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH-HHCCTTE
T ss_pred eCCCeEEEEeCCCC-----CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc-ccCCcce
Confidence 99999999999974 35788899999999999999999888999999999999999885443321111 1256789
Q ss_pred EEEeCCCCC-ceeEEEecCCC-eeeecCCCccccceeEEEEeeccc
Q 011709 423 FFQHAGHSP-SSSIKFVLRES-CLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 423 ~~~~~gh~~-~~~~~~sp~~~-~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
++.+.+|.. +.+++|+|++. +|++++. ||.|++|+....
T Consensus 371 ~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-----dg~i~iw~~~~~ 411 (430)
T 2xyi_A 371 LFIHGGHTAKISDFSWNPNEPWIICSVSE-----DNIMQVWQMAEN 411 (430)
T ss_dssp EEECCCCSSCEEEEEECSSSTTEEEEEET-----TSEEEEEEECHH
T ss_pred EEEcCCCCCCceEEEECCCCCCEEEEEEC-----CCCEEEeEcccc
Confidence 999999987 99999999999 7888888 999999987654
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.3e-41 Score=319.52 Aligned_cols=253 Identities=17% Similarity=0.281 Sum_probs=210.4
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
.....|...|++++|+| ++ .|++|+.||+|+|||+.++.... .....+.+|.+ .|++++|+|+|++|++
T Consensus 76 ~~~~~~~~~v~~~~~s~-d~-~l~~~s~dg~v~lWd~~~~~~~~--------~~~~~~~~H~~-~V~~v~~spdg~~l~s 144 (344)
T 4gqb_B 76 SAGVQTEAGVADLTWVG-ER-GILVASDSGAVELWELDENETLI--------VSKFCKYEHDD-IVSTVSVLSSGTQAVS 144 (344)
T ss_dssp SEEEEESSCEEEEEEET-TT-EEEEEETTSEEEEEEECTTSSCE--------EEEEEEECCSS-CEEEEEECTTSSEEEE
T ss_pred eeeeccCCCEEEEEEeC-CC-eEEEEECCCEEEEEeccCCCcee--------EeeccccCCCC-CEEEEEECCCCCEEEE
Confidence 34466788999999999 54 68899999999999999873221 12234568987 5999999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
|+.||+|++||+.++. .+..+.+|...|++++|++++..+
T Consensus 145 gs~d~~i~iwd~~~~~----------------------------------------~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 145 GSKDICIKVWDLAQQV----------------------------------------VLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECSSCTTE
T ss_pred EeCCCeEEEEECCCCc----------------------------------------EEEEEcCcCCceEEEEecCCCCCc
Confidence 9999999999997543 236788999999999999998778
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeee--ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
|++++.|++|++||+++++ ....+ ..|...+.+++|+|.++++|++|+.||.|+|||+++ ++++..+.+|
T Consensus 185 l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~------~~~~~~~~~h 256 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPK--PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS------TSCVLSSAVH 256 (344)
T ss_dssp EEEEETTSCEEEEETTSSS--CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECC
T ss_pred eeeeccccccccccccccc--eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC------CcEEEEEcCC
Confidence 9999999999999999988 34443 356678999999997788999999999999999998 7899999999
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCe-eeecCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESC-LVDNNH 449 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~-l~~~~~ 449 (479)
...|++++|+|++..+||+|+.|++|+|||++.+ + ++...||.. |.+++|+|++.. |++++.
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---------------~-~~~~~~H~~~V~~v~~sp~~~~llas~s~ 320 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---------------E-LFRSQAHRDFVRDATWSPLNHSLLTTVGW 320 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---------------E-EEEECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---------------c-EEEEcCCCCCEEEEEEeCCCCeEEEEEcC
Confidence 9999999999998767899999999999999873 2 345678887 999999999875 557777
Q ss_pred CccccceeEEEEeeccc
Q 011709 450 GLSYANKKIKIYCHLEA 466 (479)
Q Consensus 450 ~~~~~d~~i~i~~~~~~ 466 (479)
|+.|++|+....
T Consensus 321 -----D~~v~~w~v~~~ 332 (344)
T 4gqb_B 321 -----DHQVVHHVVPTE 332 (344)
T ss_dssp -----TSCEEEEECCC-
T ss_pred -----CCeEEEEECCCC
Confidence 999999987543
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=312.22 Aligned_cols=286 Identities=18% Similarity=0.322 Sum_probs=238.8
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|..... ...| .+|+.+..++||+..... ........+|...|.+
T Consensus 34 ~V~~v~~~~~~~~~----~~~l-----~tgs~D~~v~vW~~~~~~-------------------~~~~~~l~gh~~~v~~ 85 (321)
T 3ow8_A 34 AIWSVAWGTNKKEN----SETV-----VTGSLDDLVKVWKWRDER-------------------LDLQWSLEGHQLGVVS 85 (321)
T ss_dssp CEEEEEEC-----------CEE-----EEEETTSCEEEEEEETTE-------------------EEEEEEECCCSSCEEE
T ss_pred cEEEEEEecCCCCC----CCEE-----EEEcCCCCEEEEECCCCC-------------------eeeeeeeccCCCCEEE
Confidence 67799998852211 0223 234578899999865210 0012345689999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEec
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~ 225 (479)
++|++ ++.++|+++.|++|+|||+.++ +....+..|.. .+.+++|+|++++|++|+.||.|++||+
T Consensus 86 ~~~~~-~~~~l~s~s~D~~i~lWd~~~~------------~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 86 VDISH-TLPIAASSSLDAHIRLWDLENG------------KQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred EEECC-CCCEEEEEeCCCcEEEEECCCC------------CEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 99999 7789999999999999999887 55667778876 4789999999999999999999999999
Q ss_pred CCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEE
Q 011709 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 305 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 305 (479)
.++.. ...+..|...|.+++|+|++ .+|++++.||.|++
T Consensus 152 ~~~~~----------------------------------------~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~i 190 (321)
T 3ow8_A 152 ESGKK----------------------------------------EYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINI 190 (321)
T ss_dssp TTCSE----------------------------------------EEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred CCCce----------------------------------------eEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEE
Confidence 75432 24566788899999999999 78999999999999
Q ss_pred EeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCC
Q 011709 306 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS 385 (479)
Q Consensus 306 wd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 385 (479)
||+++++ .+..+.+|...|.+++|+| ++.+|++|+.||.|++||++. +..+..+.+|...|.+++|+|++.
T Consensus 191 wd~~~~~--~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~v~~~~~sp~~~ 261 (321)
T 3ow8_A 191 FDIATGK--LLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQH------ANLAGTLSGHASWVLNVAFCPDDT 261 (321)
T ss_dssp EETTTTE--EEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTT------CCEEEEECCCSSCEEEEEECTTSS
T ss_pred EECCCCc--EEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCC------cceeEEEcCCCCceEEEEECCCCC
Confidence 9999987 6788889999999999999 999999999999999999998 678899999999999999999999
Q ss_pred cEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 386 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 386 ~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
+ |++++.|++|+|||+++. ..+....+|.. |.+++|+|++..|++++. |+.|++|+..
T Consensus 262 ~-l~s~s~D~~v~iwd~~~~---------------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~-----d~~i~vwd~p 320 (321)
T 3ow8_A 262 H-FVSSSSDKSVKVWDVGTR---------------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGD-----DQEIHIYDCP 320 (321)
T ss_dssp E-EEEEETTSCEEEEETTTT---------------EEEEEECCCSSCEEEEEECTTSSEEEEEET-----TCCEEEEECC
T ss_pred E-EEEEeCCCcEEEEeCCCC---------------EEEEEEcCCCCcEEEEEECCCCCEEEEEeC-----CCeEEEEeCC
Confidence 4 789999999999999874 44556677876 899999999999999999 9999999853
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.3e-41 Score=325.35 Aligned_cols=285 Identities=20% Similarity=0.306 Sum_probs=239.7
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.....+|.++|++++|+| ++.+||+|+.||+|+|||+.++ .....+.+|.+ .|++++|+|++++|+
T Consensus 101 ~~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~------------~~~~~l~~h~~-~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETG------------DFERTLKGHTD-SVQDISFDHSGKLLA 166 (410)
T ss_dssp SCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTC------------CCCEEECCCSS-CEEEEEECTTSSEEE
T ss_pred eEeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEEeccCC-cEEEEEEcCCCCEEE
Confidence 445679999999999999 7889999999999999999987 56778999997 599999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCc----ccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (479)
+|+.||+|++||+.+.......... ...........+. ....++.+.+|+.....++..+.+|...|.++.|+|
T Consensus 167 sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~--s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 244 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV--SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244 (410)
T ss_dssp EEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEE--EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred EEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEE--EEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC
Confidence 9999999999999876543222111 1111111222222 123567888999999999999999999999999999
Q ss_pred CCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCC-------------------CcEEEEEeCCCcEE
Q 011709 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD-------------------DNLILTGSADNSVR 349 (479)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~-------------------~~~l~tgs~dg~I~ 349 (479)
++ .+|++|+.||+|++||++++. +...+.+|...|.+++|+|.. +.+|++|+.||.|+
T Consensus 245 ~g-~~l~s~s~D~~v~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 245 DG-TLIASCSNDQTVRVWVVATKE--CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp TS-SEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred CC-CEEEEEcCCCeEEEEECCCCc--eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence 98 789999999999999999987 677788999999999999931 67999999999999
Q ss_pred EEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC
Q 011709 350 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 429 (479)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh 429 (479)
+||+++ +.++..+.+|...|++++|+|++.+ |++|+.||.|+|||+... ..+....+|
T Consensus 322 iwd~~~------~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~~i~vwd~~~~---------------~~~~~~~~h 379 (410)
T 1vyh_C 322 MWDVST------GMCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNK---------------RCMKTLNAH 379 (410)
T ss_dssp EEETTT------TEEEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTS---------------CCCEEEECC
T ss_pred EEECCC------CceEEEEECCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCC---------------ceEEEEcCC
Confidence 999998 7889999999999999999999996 679999999999999763 223445677
Q ss_pred CC-ceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 430 SP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 430 ~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
.. |++++|+|++.+|++++. |+.|++|+.
T Consensus 380 ~~~v~~l~~~~~~~~l~sgs~-----D~~i~vW~~ 409 (410)
T 1vyh_C 380 EHFVTSLDFHKTAPYVVTGSV-----DQTVKVWEC 409 (410)
T ss_dssp SSCEEEEEECSSSSCEEEEET-----TSEEEEEC-
T ss_pred CCcEEEEEEcCCCCEEEEEeC-----CCcEEEEeC
Confidence 76 999999999999999999 999999975
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.2e-40 Score=312.35 Aligned_cols=284 Identities=18% Similarity=0.278 Sum_probs=233.1
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.....+|.+.|++++|+| ++.+||+|+.||+|+|||+.++ .....+..|.. .|.+++|+|++++|+
T Consensus 48 ~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~l~ 113 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTT------------NKVHAIPLRSS-WVMTCAYAPSGNYVA 113 (340)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC------------CEEEEEECSSS-CEEEEEECTTSSEEE
T ss_pred heeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC------------CcceEeecCCc-cEEEEEECCCCCEEE
Confidence 445668999999999999 8889999999999999999887 55677888886 589999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceee------cCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK------QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
+|+.|+.|++||+.+......... ...........+. ......++.+.+|+..+...+..+.+|...|.+++|
T Consensus 114 s~~~d~~v~iw~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 192 (340)
T 1got_B 114 CGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp EEETTCEEEEEETTTCSBSCEEEE-EEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEeCCCeEEEEECccCCCcceeEE-EecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence 999999999999976432110000 0000000000010 112235778899999999889999999999999999
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
+|++ .+|++|+.||.|++||++++. ....+.+|...|++++|+| ++++|++|+.||+|++||++. +..+.
T Consensus 193 ~~~~-~~l~sg~~d~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~------~~~~~ 262 (340)
T 1got_B 193 APDT-RLFVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA------DQELM 262 (340)
T ss_dssp CTTS-SEEEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEE
T ss_pred CCCC-CEEEEEeCCCcEEEEECCCCe--eEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCC------CcEEE
Confidence 9998 789999999999999999987 6778889999999999999 999999999999999999997 55666
Q ss_pred eec--CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCe
Q 011709 367 KFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESC 443 (479)
Q Consensus 367 ~~~--~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~ 443 (479)
.+. .+...|++++|+|+++ +|++|+.||.|++||+... ..+....||.. |.+++|+|++.+
T Consensus 263 ~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~s~dg~~ 326 (340)
T 1got_B 263 TYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKA---------------DRAGVLAGHDNRVSCLGVTDDGMA 326 (340)
T ss_dssp EECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECTTSSC
T ss_pred EEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccC---------------cEeeEeecCCCcEEEEEEcCCCCE
Confidence 554 3345799999999999 5789999999999999873 33445678876 899999999999
Q ss_pred eeecCCCccccceeEEEEe
Q 011709 444 LVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 444 l~~~~~~~~~~d~~i~i~~ 462 (479)
|++++. |+.|++|+
T Consensus 327 l~s~s~-----D~~i~iWd 340 (340)
T 1got_B 327 VATGSW-----DSFLKIWN 340 (340)
T ss_dssp EEEEET-----TSCEEEEC
T ss_pred EEEEcC-----CccEEecC
Confidence 999999 99999995
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-39 Score=312.60 Aligned_cols=291 Identities=20% Similarity=0.319 Sum_probs=230.6
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.....+|.+.|++++|+| ++.+||+|+.||+|+|||+.++ .....+.+|.. .|.+++|+|++++|+
T Consensus 59 ~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~------------~~~~~~~~h~~-~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTS------------QKTHAIKLHCP-WVMECAFAPNGQSVA 124 (380)
T ss_dssp EEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTT------------EEEEEEECCCT-TCCCCEECTTSSEEE
T ss_pred eecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------ccceEEecCCC-CEEEEEECCCCCEEE
Confidence 345568999999999999 8889999999999999999887 56678889987 589999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCC--CCCcee--------ecCCCCCCCCCCCCCCCCCCCceee-----cCC
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAG--SSGSII--------KQSPKPGDGNDKAADGPSVGPRGIY-----NGH 277 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h 277 (479)
+|+.|+.|++||+.+...............+ .....+ .......++.+.+|+..+...+..+ .+|
T Consensus 125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h 204 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH 204 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC
T ss_pred EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC
Confidence 9999999999999754221110000000000 000000 1112245788899999988877666 679
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~ 357 (479)
...|.+++|++.+..+|++|+.||+|++||++.... .+..+.+|...|++++|+| ++.+|++|+.||+|++||+++
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~-- 280 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRT-- 280 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-CCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTT--
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-ceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCC--
Confidence 999999999885558999999999999999985432 5677789999999999999 999999999999999999998
Q ss_pred CCCCCCceeeecCCC-------CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEe----
Q 011709 358 SNGVGSPINKFEGHS-------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH---- 426 (479)
Q Consensus 358 ~~~~~~~~~~~~~h~-------~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~---- 426 (479)
+.++..+..+. ..|++++|+|++++ |++|+.||.|+|||+... +.+...
T Consensus 281 ----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~vwd~~~~---------------~~~~~~~~~~ 340 (380)
T 3iz6_a 281 ----GHQLQVYNREPDRNDNELPIVTSVAFSISGRL-LFAGYSNGDCYVWDTLLA---------------EMVLNLGTLQ 340 (380)
T ss_dssp ----TEEEEEECCCCSSSCCSSCSCSEEEECSSSSE-EEEECTTSCEEEEETTTC---------------CEEEEECCSC
T ss_pred ----CcEEEEecccccccccccCceEEEEECCCCCE-EEEEECCCCEEEEECCCC---------------ceEEEEeccc
Confidence 66776665443 35899999999994 779999999999999773 122222
Q ss_pred CCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 427 AGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 427 ~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
.+|.. |.+++|+|++.+|++++. |+.|++|+....
T Consensus 341 ~~h~~~v~~l~~s~dg~~l~sgs~-----D~~i~iW~~~~~ 376 (380)
T 3iz6_a 341 NSHEGRISCLGLSSDGSALCTGSW-----DKNLKIWAFSGH 376 (380)
T ss_dssp SSCCCCCCEEEECSSSSEEEEECT-----TSCEEEEECCSS
T ss_pred CCCCCceEEEEECCCCCEEEEeeC-----CCCEEEEecCCC
Confidence 56776 999999999999999999 999999987643
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2e-39 Score=309.53 Aligned_cols=255 Identities=20% Similarity=0.310 Sum_probs=208.0
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
....+|.+.|++++|+| ++. +++++.||+|+|||+.++.... .......+|.. .|++++|+|++++|++
T Consensus 88 ~~~~~~~~~V~~~~~s~-d~~-~l~~s~dg~v~lWd~~~~~~~~--------~~~~~~~~h~~-~V~~v~~spdg~~l~s 156 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVS-EKG-ILVASDSGAVELWEILEKESLL--------VNKFAKYEHDD-IVKTLSVFSDGTQAVS 156 (357)
T ss_dssp SEEEECSSCEEEEEEET-TTE-EEEEETTSCEEEC--------C--------CCCEEECCCSS-CEEEEEECSSSSEEEE
T ss_pred cccCCCCCCEEEEEEcC-CCC-EEEEECCCEEEEeeccccceeE--------EEeeccCCCCC-CEEEEEECCCCCEEEE
Confidence 45568999999999999 554 5567889999999998873221 22345568886 5999999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
|+.||+|++||++++.. +..+.+|...|++++|++++..+
T Consensus 157 gs~dg~v~iwd~~~~~~----------------------------------------~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 157 GGKDFSVKVWDLSQKAV----------------------------------------LKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EETTSCEEEEETTTTEE----------------------------------------EEEECCCSSCEEEEEECTTCSSC
T ss_pred EeCCCeEEEEECCCCcE----------------------------------------EEEEcCCCCCEEEEEEccCCCce
Confidence 99999999999975432 36678899999999999998778
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
+++++.||.|++||+++++.........|...+.+++|+|.++.+|++|+.|+.|++||+++ ++++..+.+|..
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~------~~~~~~~~~~~~ 270 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN------PDSAQTSAVHSQ 270 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC------GGGCEEECCCSS
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC------CcEeEEEeccce
Confidence 99999999999999999874333344567888999999996678999999999999999998 788999999999
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEec-CCCeeeecCCCc
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVL-RESCLVDNNHGL 451 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp-~~~~l~~~~~~~ 451 (479)
.|++++|+|++..+||+|+.|++|+|||++.+ +++ ...+|.. |++++|+| ++.+|++++.
T Consensus 271 ~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---------------~~~-~~~~H~~~V~~vafsP~d~~~l~s~s~-- 332 (357)
T 4g56_B 271 NITGLAYSYHSSPFLASISEDCTVAVLDADFS---------------EVF-RDLSHRDFVTGVAWSPLDHSKFTTVGW-- 332 (357)
T ss_dssp CEEEEEECSSSSCCEEEEETTSCEEEECTTSC---------------EEE-EECCCSSCEEEEEECSSSTTEEEEEET--
T ss_pred eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---------------cEe-EECCCCCCEEEEEEeCCCCCEEEEEcC--
Confidence 99999999998767899999999999999873 222 3346776 99999998 7899999999
Q ss_pred cccceeEEEEeeccc
Q 011709 452 SYANKKIKIYCHLEA 466 (479)
Q Consensus 452 ~~~d~~i~i~~~~~~ 466 (479)
||.|++|+....
T Consensus 333 ---Dg~v~iW~~~~~ 344 (357)
T 4g56_B 333 ---DHKVLHHHLPSE 344 (357)
T ss_dssp ---TSCEEEEECC--
T ss_pred ---CCeEEEEECCCC
Confidence 999999987654
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.1e-39 Score=302.53 Aligned_cols=249 Identities=19% Similarity=0.293 Sum_probs=215.8
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
....+|.+.|++++|+| ++.+||+|+.||+|+|||+.++ .....+.+|.. .|.+++|+|++++|++
T Consensus 7 ~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~s 72 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQ------------VEVRSIQVTET-PVRAGKFIARKNWIIV 72 (304)
T ss_dssp EEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEEEGGGTEEEE
T ss_pred EeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCC------------ceeEEeeccCC-cEEEEEEeCCCCEEEE
Confidence 34568999999999999 8889999999999999999887 56677888886 5899999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
|+.|++|++||+.++. .+..+.+|...|.+++|+|++ .+
T Consensus 73 ~s~d~~i~vwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~ 111 (304)
T 2ynn_A 73 GSDDFRIRVFNYNTGE----------------------------------------KVVDFEAHPDYIRSIAVHPTK-PY 111 (304)
T ss_dssp EETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS-SE
T ss_pred ECCCCEEEEEECCCCc----------------------------------------EEEEEeCCCCcEEEEEEcCCC-CE
Confidence 9999999999997543 236778899999999999998 68
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee-cCCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHS 372 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~-~~h~ 372 (479)
|++|+.||+|++||++++.. +...+.+|...|.+++|+|.++.+|++|+.||+|++||++. ..+...+ .+|.
T Consensus 112 l~sgs~D~~v~lWd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~------~~~~~~~~~~~~ 184 (304)
T 2ynn_A 112 VLSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------STPNFTLTTGQE 184 (304)
T ss_dssp EEEEETTSCEEEEEGGGTTE-EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC------SSCSEEEECCCT
T ss_pred EEEECCCCeEEEEECCCCcc-hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC------CCccceeccCCc
Confidence 99999999999999988752 45667899999999999996689999999999999999987 4444444 4567
Q ss_pred CcEEEEEEec--CCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCC
Q 011709 373 AAVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 373 ~~v~~l~~~p--~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~ 449 (479)
..|..+.|+| ++. +|++++.|++|+|||++.. ..+....||.. +.+++|+|++.+|++++.
T Consensus 185 ~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~~---------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~ 248 (304)
T 2ynn_A 185 RGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTK---------------SCVATLEGHMSNVSFAVFHPTLPIIISGSE 248 (304)
T ss_dssp TCEEEEEECCSTTCC-EEEEEETTSEEEEEETTTT---------------EEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred CcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCCC---------------ccceeeCCCCCCEEEEEECCCCCEEEEEcC
Confidence 8899999987 455 5789999999999999874 45667778877 899999999999999999
Q ss_pred CccccceeEEEEeecc
Q 011709 450 GLSYANKKIKIYCHLE 465 (479)
Q Consensus 450 ~~~~~d~~i~i~~~~~ 465 (479)
||.|++|+...
T Consensus 249 -----Dg~i~iWd~~~ 259 (304)
T 2ynn_A 249 -----DGTLKIWNSST 259 (304)
T ss_dssp -----TSCEEEEETTT
T ss_pred -----CCeEEEEECCC
Confidence 99999998654
No 9
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.3e-39 Score=298.25 Aligned_cols=261 Identities=18% Similarity=0.244 Sum_probs=210.0
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCcEE
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVL 212 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~l~ 212 (479)
...+|.+.|++++|+| ++++||+|+.|++|+|||+... ..+....+.+|.+ .|++++|+++ +++|+
T Consensus 4 ~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~----------~~~~~~~l~gH~~-~V~~v~~s~~~~g~~l~ 71 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILA 71 (297)
T ss_dssp ECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSS----------CBCCCEEECCCSS-CEEEEEECCGGGCSEEE
T ss_pred eccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCC----------CcEEEEEEccccC-CeEEEEecCCCcCCEEE
Confidence 3458999999999999 8899999999999999999754 1256678999997 5999999874 88999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC--C
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--S 290 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~ 290 (479)
+|+.||+|++||++++.. ..+..+.+|...|.+++|+|+ +
T Consensus 72 s~s~D~~v~iWd~~~~~~--------------------------------------~~~~~~~~h~~~v~~v~~~p~~~g 113 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG 113 (297)
T ss_dssp EEETTTEEEEEEBSSSCB--------------------------------------CCCEEECCCSSCEEEEEECCGGGC
T ss_pred EEcCCCEEEEEEcCCCce--------------------------------------EEEEEeecCCCceeEEEeCcCCCC
Confidence 999999999999975321 112556779999999999997 5
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCC-------------CcEEEEEeCCCcEEEEecCCCC
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD-------------DNLILTGSADNSVRMFDRRNLT 357 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~-------------~~~l~tgs~dg~I~iwd~~~~~ 357 (479)
.+|++++.||.|++||+++........+.+|...|.+++|+| + +.+|++|+.|++|++||++...
T Consensus 114 -~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 114 -PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP-ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp -SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC-CC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred -cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC-CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence 689999999999999998764222455678999999999999 4 5799999999999999998721
Q ss_pred CCCCCCceeeecCCCCcEEEEEEecCC--CcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-cee
Q 011709 358 SNGVGSPINKFEGHSAAVLCVQWSPDK--SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSS 434 (479)
Q Consensus 358 ~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~ 434 (479)
. ....+..+.+|...|.+++|+|++ ..+||+++.|++|+|||++...... ....+...+|.. +.+
T Consensus 192 ~--~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~----------~~~~~~~~~~~~~v~~ 259 (297)
T 2pm7_B 192 Q--TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW----------KKTLLKEEKFPDVLWR 259 (297)
T ss_dssp T--EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC----------EEEESSSSCCSSCEEE
T ss_pred c--eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc----------ceeeeecccCCCcEEE
Confidence 0 001566789999999999999996 3468999999999999987631100 011111234544 899
Q ss_pred EEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 435 IKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 435 ~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
++|+|++.+|++++. |+.|++|+..
T Consensus 260 ~~~s~~g~~las~~~-----D~~v~lw~~~ 284 (297)
T 2pm7_B 260 ASWSLSGNVLALSGG-----DNKVTLWKEN 284 (297)
T ss_dssp EEECSSSCCEEEEET-----TSCEEEEEEC
T ss_pred EEECCCCCEEEEEcC-----CCcEEEEEEC
Confidence 999999999999999 9999999865
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-39 Score=306.69 Aligned_cols=310 Identities=15% Similarity=0.222 Sum_probs=234.2
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+...+.|.|+- ..|. +++.+..++||+.+.... ........+|.+.|.+
T Consensus 18 ~v~~l~~sp~g--------~~la-----s~~~D~~i~iw~~~~~~~------------------~~~~~~~~~h~~~v~~ 66 (345)
T 3fm0_A 18 RCWFLAWNPAG--------TLLA-----SCGGDRRIRIWGTEGDSW------------------ICKSVLSEGHQRTVRK 66 (345)
T ss_dssp CEEEEEECTTS--------SCEE-----EEETTSCEEEEEEETTEE------------------EEEEEECSSCSSCEEE
T ss_pred cEEEEEECCCC--------CEEE-----EEcCCCeEEEEEcCCCcc------------------eeeeeeccccCCcEEE
Confidence 44578888852 2222 334788899998652110 0001122479999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEec
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~ 225 (479)
++|+| ++++||+|+.|++|+|||+... .......+.+|.. .|.+++|+|++++|++|+.|++|++||+
T Consensus 67 ~~~sp-~g~~l~s~s~D~~v~iw~~~~~----------~~~~~~~~~~h~~-~v~~v~~sp~~~~l~s~s~D~~v~iwd~ 134 (345)
T 3fm0_A 67 VAWSP-CGNYLASASFDATTCIWKKNQD----------DFECVTTLEGHEN-EVKSVAWAPSGNLLATCSRDKSVWVWEV 134 (345)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEEECCC-----------EEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEECC-CCCEEEEEECCCcEEEEEccCC----------CeEEEEEccCCCC-CceEEEEeCCCCEEEEEECCCeEEEEEC
Confidence 99999 8889999999999999998765 2234667889997 5999999999999999999999999999
Q ss_pred CCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEE
Q 011709 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 305 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 305 (479)
..... ...+..+.+|...|.+++|+|++ .+|++++.|+.|++
T Consensus 135 ~~~~~-------------------------------------~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~ 176 (345)
T 3fm0_A 135 DEEDE-------------------------------------YECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKL 176 (345)
T ss_dssp CTTSC-------------------------------------EEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEE
T ss_pred CCCCC-------------------------------------eEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEE
Confidence 75321 11235677899999999999998 68999999999999
Q ss_pred EeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC---------CCCceeeecC-CCCcE
Q 011709 306 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG---------VGSPINKFEG-HSAAV 375 (479)
Q Consensus 306 wd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~---------~~~~~~~~~~-h~~~v 375 (479)
||++++...+...+.+|...|++++|+| ++.+|++|+.||+|+|||.+...... ...++..+.+ |...|
T Consensus 177 w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 255 (345)
T 3fm0_A 177 YREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI 255 (345)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred EEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcE
Confidence 9998876435567789999999999999 99999999999999999986432110 0122344444 88999
Q ss_pred EEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCC-eeeecCCCccc
Q 011709 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRES-CLVDNNHGLSY 453 (479)
Q Consensus 376 ~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~-~l~~~~~~~~~ 453 (479)
.+++|+|++.. |++++.|+.|++|++......... ........+.+|.. |.+++|+|++. +|++++.
T Consensus 256 ~~v~~~~~~~~-l~s~~~d~~i~vw~~~~~~~~~~~------~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~---- 324 (345)
T 3fm0_A 256 YDIAWCQLTGA-LATACGDDAIRVFQEDPNSDPQQP------TFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD---- 324 (345)
T ss_dssp EEEEECTTTCC-EEEEETTSCEEEEEECTTSCTTSC------CEEEEEEETTSSSSCEEEEEECSSSTTEEEEEET----
T ss_pred EEEEEecCCCE-EEEEeCCCeEEEEEeCCCCCccee------eEEEEeeecccccCcEeEeEEeCCCceEEEEcCC----
Confidence 99999999995 789999999999998763221110 00011234568877 99999999984 8999998
Q ss_pred cceeEEEEeecccccc
Q 011709 454 ANKKIKIYCHLEALKS 469 (479)
Q Consensus 454 ~d~~i~i~~~~~~~~~ 469 (479)
||.|++|+....-+.
T Consensus 325 -Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 325 -DGEVAFWKYQRPEGL 339 (345)
T ss_dssp -TSCEEEEEECC----
T ss_pred -CCcEEEEEecCCCCc
Confidence 999999988765443
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.8e-39 Score=305.16 Aligned_cols=286 Identities=18% Similarity=0.276 Sum_probs=230.7
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.....+|.+.|++++|+| ++.+||||+.||+|+|||..+. .....+..|.. .|.+++|+|++.+|+
T Consensus 57 ~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~------------~~~~~~~~~~~-~v~~~~~sp~g~~la 122 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTT------------NKEHAVTMPCT-WVMACAYAPSGCAIA 122 (354)
T ss_dssp EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC------------CEEEEEECSSS-CCCEEEECTTSSEEE
T ss_pred EEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCC------------CcceEEecCCC-CEEEEEECCCCCEEE
Confidence 445568999999999999 7889999999999999999876 45566777876 589999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCC-cccccCCCCCceeec-------CCCCCCCCCCCCCCCCCCCceeecCCCCceEEE
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDP-ATAKSAGSSGSIIKQ-------SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 284 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 284 (479)
+|+.|+.+++|++........... ............+.+ .....++.+.+|+......+..+.+|...|.++
T Consensus 123 sg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~ 202 (354)
T 2pbi_B 123 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCL 202 (354)
T ss_dssp EESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEE
Confidence 999999999999865321110000 000001111111111 112356788999999999999999999999999
Q ss_pred EEeeCC-CcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCC
Q 011709 285 TFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 363 (479)
Q Consensus 285 ~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~ 363 (479)
+|+|.. ..+|++|+.||.|++||+++++ ++..+.+|...|++++|+| ++.+|++|+.|++|++||++. ..
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~------~~ 273 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQ--CVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRA------DR 273 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TE
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCC------Cc
Confidence 998852 2689999999999999999988 6788889999999999999 999999999999999999997 55
Q ss_pred ceeeecC--CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecC
Q 011709 364 PINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLR 440 (479)
Q Consensus 364 ~~~~~~~--h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~ 440 (479)
.+..+.. +...+.+++|+|++. +|++|+.|+.|+|||+..+ ..+....||.. |.+++|+|+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~---------------~~~~~l~~h~~~v~~l~~spd 337 (354)
T 2pbi_B 274 EVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKG---------------SRVSILFGHENRVSTLRVSPD 337 (354)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTC---------------SEEEEECCCSSCEEEEEECTT
T ss_pred EEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCC---------------ceEEEEECCCCcEEEEEECCC
Confidence 5555543 345789999999999 5789999999999999874 23455678877 999999999
Q ss_pred CCeeeecCCCccccceeEEEEe
Q 011709 441 ESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 441 ~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
+.+|++++. |+.|++|+
T Consensus 338 g~~l~sgs~-----D~~v~vW~ 354 (354)
T 2pbi_B 338 GTAFCSGSW-----DHTLRVWA 354 (354)
T ss_dssp SSCEEEEET-----TSEEEEEC
T ss_pred CCEEEEEcC-----CCCEEecC
Confidence 999999999 99999995
No 12
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.3e-39 Score=302.58 Aligned_cols=250 Identities=18% Similarity=0.314 Sum_probs=216.3
Q ss_pred EEecCCCceeEEEecCC---CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 135 KTIIHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~---~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
+..+|.++|++++|+|. ++.+||||+.|++|+|||+.... ......+.+|.. .|.+++|++++.++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~----------~~~~~~l~gh~~-~v~~~~~~~~~~~l 95 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER----------LDLQWSLEGHQL-GVVSVDISHTLPIA 95 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE----------EEEEEEECCCSS-CEEEEEECSSSSEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC----------eeeeeeeccCCC-CEEEEEECCCCCEE
Confidence 33589999999999983 46799999999999999997651 133456889997 58999999999999
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
++|+.|++|++||+.++.. +..+..|...+.+++|+|++
T Consensus 96 ~s~s~D~~i~lWd~~~~~~----------------------------------------~~~~~~~~~~~~~~~~spdg- 134 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGKQ----------------------------------------IKSIDAGPVDAWTLAFSPDS- 134 (321)
T ss_dssp EEEETTSEEEEEETTTTEE----------------------------------------EEEEECCTTCCCCEEECTTS-
T ss_pred EEEeCCCcEEEEECCCCCE----------------------------------------EEEEeCCCccEEEEEECCCC-
Confidence 9999999999999975432 24566778889999999999
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
.+|++++.||.|++||++++. ....+..|...|.+++|+| ++++|++|+.||.|++||+++ ++++..+.+|
T Consensus 135 ~~l~~g~~dg~v~i~~~~~~~--~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~h 205 (321)
T 3ow8_A 135 QYLATGTHVGKVNIFGVESGK--KEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIAT------GKLLHTLEGH 205 (321)
T ss_dssp SEEEEECTTSEEEEEETTTCS--EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCC
T ss_pred CEEEEEcCCCcEEEEEcCCCc--eeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCC------CcEEEEEccc
Confidence 789999999999999999988 5667778999999999999 999999999999999999998 7889999999
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~ 450 (479)
..+|++++|+|+++ +|++++.|+.|+|||++.. .+.....+|.. +.+++|+|++.+|++++.
T Consensus 206 ~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~---------------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 268 (321)
T 3ow8_A 206 AMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHA---------------NLAGTLSGHASWVLNVAFCPDDTHFVSSSS- 268 (321)
T ss_dssp SSCCCEEEECTTSC-EEEEECTTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred CCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCc---------------ceeEEEcCCCCceEEEEECCCCCEEEEEeC-
Confidence 99999999999998 5789999999999999873 34556778887 899999999999999999
Q ss_pred ccccceeEEEEeeccc
Q 011709 451 LSYANKKIKIYCHLEA 466 (479)
Q Consensus 451 ~~~~d~~i~i~~~~~~ 466 (479)
|+.|++|+....
T Consensus 269 ----D~~v~iwd~~~~ 280 (321)
T 3ow8_A 269 ----DKSVKVWDVGTR 280 (321)
T ss_dssp ----TSCEEEEETTTT
T ss_pred ----CCcEEEEeCCCC
Confidence 999999986543
No 13
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.7e-38 Score=291.26 Aligned_cols=274 Identities=21% Similarity=0.314 Sum_probs=223.0
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|+- ..|+ ++..+..+++|+.+.. ........|..+|.+
T Consensus 15 ~V~~~~fsp~~--------~~l~-----s~~~dg~v~lWd~~~~---------------------~~~~~~~~~~~~v~~ 60 (304)
T 2ynn_A 15 RVKGIDFHPTE--------PWVL-----TTLYSGRVELWNYETQ---------------------VEVRSIQVTETPVRA 60 (304)
T ss_dssp CEEEEEECSSS--------SEEE-----EEETTSEEEEEETTTT---------------------EEEEEEECCSSCEEE
T ss_pred ceEEEEECCCC--------CEEE-----EEcCCCcEEEEECCCC---------------------ceeEEeeccCCcEEE
Confidence 56788888862 2333 2336788999975321 013344578999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEec
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~ 225 (479)
++|+| ++++|++|+.|++|++||+.++ +....+.+|.+ .|++++|+|++++|++|+.||+|++||+
T Consensus 61 ~~~~~-~~~~l~s~s~d~~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~lWd~ 126 (304)
T 2ynn_A 61 GKFIA-RKNWIIVGSDDFRIRVFNYNTG------------EKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNW 126 (304)
T ss_dssp EEEEG-GGTEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEEG
T ss_pred EEEeC-CCCEEEEECCCCEEEEEECCCC------------cEEEEEeCCCC-cEEEEEEcCCCCEEEEECCCCeEEEEEC
Confidence 99999 8889999999999999999987 66778999997 5999999999999999999999999999
Q ss_pred CCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEE
Q 011709 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 305 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 305 (479)
+++.. ....+.+|...|.+++|+|.+..+|++|+.|++|++
T Consensus 127 ~~~~~---------------------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i 167 (304)
T 2ynn_A 127 ENNWA---------------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (304)
T ss_dssp GGTTE---------------------------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred CCCcc---------------------------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 74321 125677899999999999965579999999999999
Q ss_pred EeCCCCCCCceeeeccCCCCeEEEEecCC-CCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCC
Q 011709 306 WDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384 (479)
Q Consensus 306 wd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 384 (479)
||+++... ......+|...+..++|+|. ++.+|++|+.||+|++||+++ +.++..+.+|...|.+++|+|++
T Consensus 168 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~------~~~~~~~~~h~~~v~~~~~~p~~ 240 (304)
T 2ynn_A 168 WSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAVFHPTL 240 (304)
T ss_dssp EETTCSSC-SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT------TEEEEEEECCSSCEEEEEECSSS
T ss_pred EECCCCCc-cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC------CccceeeCCCCCCEEEEEECCCC
Confidence 99988763 23344467788999999873 567999999999999999998 78999999999999999999999
Q ss_pred CcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCC--eeeecCC
Q 011709 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRES--CLVDNNH 449 (479)
Q Consensus 385 ~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~--~l~~~~~ 449 (479)
+ +|++|+.||+|+|||+++. .+.....+|.. +.+++|+|++. +++++++
T Consensus 241 ~-~l~s~s~Dg~i~iWd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 241 P-IIISGSEDGTLKIWNSSTY---------------KVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292 (304)
T ss_dssp S-EEEEEETTSCEEEEETTTC---------------CEEEEECCSSSSEEEEEECTTCGGGCEEEEET
T ss_pred C-EEEEEcCCCeEEEEECCCC---------------ceeeeccCCCccEEEEEECCCCCceEEEEecC
Confidence 8 5789999999999999874 33445555554 88999999875 4666655
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=300.47 Aligned_cols=270 Identities=19% Similarity=0.333 Sum_probs=214.4
Q ss_pred EEEecCCC-ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcE-EEeccCCCceeeeeecCCCCcE
Q 011709 134 HKTIIHPG-EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 134 ~~~~~h~~-~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~v~~l~~s~~~~~l 211 (479)
....+|++ .|.+++|+| ++.+||+|+.|++|+|||+.++.. .... ...+|.. .|.+++|+|++++|
T Consensus 9 ~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~----------~~~~~~~~~h~~-~v~~~~~sp~g~~l 76 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSW----------ICKSVLSEGHQR-TVRKVAWSPCGNYL 76 (345)
T ss_dssp EEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEE----------EEEEEECSSCSS-CEEEEEECTTSSEE
T ss_pred eeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcc----------eeeeeeccccCC-cEEEEEECCCCCEE
Confidence 34457887 999999999 889999999999999999987611 1112 2357886 59999999999999
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
++|+.|++|++||+..... ..+..+.+|...|.+++|+|++
T Consensus 77 ~s~s~D~~v~iw~~~~~~~--------------------------------------~~~~~~~~h~~~v~~v~~sp~~- 117 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDF--------------------------------------ECVTTLEGHENEVKSVAWAPSG- 117 (345)
T ss_dssp EEEETTSCEEEEEECCC-E--------------------------------------EEEEEECCCSSCEEEEEECTTS-
T ss_pred EEEECCCcEEEEEccCCCe--------------------------------------EEEEEccCCCCCceEEEEeCCC-
Confidence 9999999999999864311 1236778899999999999998
Q ss_pred cEEEEEecCCeEEEEeCCCCCC-CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC
Q 011709 292 QEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 370 (479)
.+|++++.|++|++||++++.. .++..+.+|...|.+++|+| ++.+|++|+.|+.|++||++... ..++..+.+
T Consensus 118 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~ 192 (345)
T 3fm0_A 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDD----WVCCATLEG 192 (345)
T ss_dssp SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTE----EEEEEEECC
T ss_pred CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCC----EEEEEEecC
Confidence 7899999999999999987652 24566778999999999999 99999999999999999998721 135578899
Q ss_pred CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC-CCC-ceeEEEecCCCeeeecC
Q 011709 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HSP-SSSIKFVLRESCLVDNN 448 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g-h~~-~~~~~~sp~~~~l~~~~ 448 (479)
|...|++++|+|++++ |++++.|++|+|||+...+................+....+ |.. +.+++|+|++..|++++
T Consensus 193 h~~~v~~l~~sp~g~~-l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 271 (345)
T 3fm0_A 193 HESTVWSLAFDPSGQR-LASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC 271 (345)
T ss_dssp CSSCEEEEEECTTSSE-EEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE
T ss_pred CCCceEEEEECCCCCE-EEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe
Confidence 9999999999999984 78999999999999765433222111111111123334444 555 89999999999999999
Q ss_pred CCccccceeEEEEeecc
Q 011709 449 HGLSYANKKIKIYCHLE 465 (479)
Q Consensus 449 ~~~~~~d~~i~i~~~~~ 465 (479)
. |+.|++|+...
T Consensus 272 ~-----d~~i~vw~~~~ 283 (345)
T 3fm0_A 272 G-----DDAIRVFQEDP 283 (345)
T ss_dssp T-----TSCEEEEEECT
T ss_pred C-----CCeEEEEEeCC
Confidence 9 99999997643
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.4e-37 Score=292.25 Aligned_cols=252 Identities=17% Similarity=0.282 Sum_probs=214.1
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
....+|.+.|++++|+|.++++|++|+.|++|++||+...... ...+...+.+|.. .|.+++|+|++++|++
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~-------~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-------FGVPVRSFKGHSH-IVQDCTLTADGAYALS 82 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-------EEEEEEEEECCSS-CEEEEEECTTSSEEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-------ccccceEEeCCcc-cEEEEEECCCCCEEEE
Confidence 3456899999999999977789999999999999998754211 1134667899997 5999999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
|+.|++|++||+.++.. +..+.+|...|.+++|+|++ .+
T Consensus 83 ~s~D~~v~~wd~~~~~~----------------------------------------~~~~~~h~~~v~~~~~~~~~-~~ 121 (319)
T 3frx_A 83 ASWDKTLRLWDVATGET----------------------------------------YQRFVGHKSDVMSVDIDKKA-SM 121 (319)
T ss_dssp EETTSEEEEEETTTTEE----------------------------------------EEEEECCSSCEEEEEECTTS-CE
T ss_pred EeCCCEEEEEECCCCCe----------------------------------------eEEEccCCCcEEEEEEcCCC-CE
Confidence 99999999999975432 36678899999999999998 78
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCC-----CCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-----DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-----~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
|++++.|++|++||++.. .+..+.+|...|.+++|+|. ++.+|++|+.|+.|++||++. ......+
T Consensus 122 l~s~s~D~~i~vwd~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~~ 192 (319)
T 3frx_A 122 IISGSRDKTIKVWTIKGQ---CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ------FQIEADF 192 (319)
T ss_dssp EEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT------TEEEEEE
T ss_pred EEEEeCCCeEEEEECCCC---eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc------chhheee
Confidence 999999999999999743 46677799999999999983 234899999999999999998 6788889
Q ss_pred cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecC
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNN 448 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~ 448 (479)
.+|...|++++|+|++. +|++++.||.|+|||+... ..+....++..+.+++|+|++.+|+++.
T Consensus 193 ~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~---------------~~~~~~~~~~~v~~~~~sp~~~~la~~~ 256 (319)
T 3frx_A 193 IGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAK---------------KAMYTLSAQDEVFSLAFSPNRYWLAAAT 256 (319)
T ss_dssp CCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTT---------------EEEEEEECCSCEEEEEECSSSSEEEEEE
T ss_pred cCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---------------cEEEEecCCCcEEEEEEcCCCCEEEEEc
Confidence 99999999999999999 5789999999999999874 3455566677899999999999998876
Q ss_pred CCccccceeEEEEeecc
Q 011709 449 HGLSYANKKIKIYCHLE 465 (479)
Q Consensus 449 ~~~~~~d~~i~i~~~~~ 465 (479)
. + .|++|+...
T Consensus 257 ~-----~-~i~v~~~~~ 267 (319)
T 3frx_A 257 A-----T-GIKVFSLDP 267 (319)
T ss_dssp T-----T-EEEEEEETT
T ss_pred C-----C-CcEEEEeCc
Confidence 6 3 588887543
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.7e-37 Score=291.69 Aligned_cols=293 Identities=15% Similarity=0.224 Sum_probs=228.5
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|.-. ..| .+++.+..+++|++...... + ........+|.+.|++
T Consensus 19 ~V~~l~~~~~~~-------~~l-----~s~s~D~~v~~W~~~~~~~~---------~-------~~~~~~~~~h~~~v~~ 70 (319)
T 3frx_A 19 WVTSLATSAGQP-------NLL-----LSASRDKTLISWKLTGDDQK---------F-------GVPVRSFKGHSHIVQD 70 (319)
T ss_dssp CEEEEEECSSCT-------TEE-----EEEETTSEEEEEEEEEETTE---------E-------EEEEEEEECCSSCEEE
T ss_pred eEEEEEccCCCc-------cEE-----EEecCCccEEEecCCCCCcc---------c-------cccceEEeCCcccEEE
Confidence 567788877410 122 23447889999987532110 0 1113455689999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEec
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~ 225 (479)
++|+| ++.+|++|+.|++|+|||+.++ +....+.+|.. .|.+++|+|++.+|++|+.|++|++||+
T Consensus 71 ~~~s~-dg~~l~s~s~D~~v~~wd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~D~~i~vwd~ 136 (319)
T 3frx_A 71 CTLTA-DGAYALSASWDKTLRLWDVATG------------ETYQRFVGHKS-DVMSVDIDKKASMIISGSRDKTIKVWTI 136 (319)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred EEECC-CCCEEEEEeCCCEEEEEECCCC------------CeeEEEccCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 99999 8889999999999999999987 56778899997 5999999999999999999999999998
Q ss_pred CCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC-----CcEEEEEecC
Q 011709 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-----AQEFCSVGDD 300 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~~l~s~~~d 300 (479)
+.. .+..+.+|...|.++.|+|.. ...+++++.|
T Consensus 137 ~~~-----------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d 175 (319)
T 3frx_A 137 KGQ-----------------------------------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175 (319)
T ss_dssp TSC-----------------------------------------EEEEECCCSSCEEEEEECCC------CCEEEEEETT
T ss_pred CCC-----------------------------------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCC
Confidence 632 125677899999999999853 2479999999
Q ss_pred CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEE
Q 011709 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 380 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 380 (479)
+.|++||+++.+ ....+.+|...|++++|+| ++.+|++|+.||.|++||++. ++++..+..+ ..|.+++|
T Consensus 176 ~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~-~~v~~~~~ 245 (319)
T 3frx_A 176 KMVKAWNLNQFQ--IEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA------KKAMYTLSAQ-DEVFSLAF 245 (319)
T ss_dssp SCEEEEETTTTE--EEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTT------TEEEEEEECC-SCEEEEEE
T ss_pred CEEEEEECCcch--hheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC------CcEEEEecCC-CcEEEEEE
Confidence 999999999877 6677789999999999999 999999999999999999998 6778888754 68999999
Q ss_pred ecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC-CCceeEEEecCCCeeeecCCCccccceeEE
Q 011709 381 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-SPSSSIKFVLRESCLVDNNHGLSYANKKIK 459 (479)
Q Consensus 381 ~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh-~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~ 459 (479)
+|++. +|++++. +.+++|++... .......... .. ...+| ..+.+++|+|+|++|++++. ||.|+
T Consensus 246 sp~~~-~la~~~~-~~i~v~~~~~~-~~~~~~~~~~-----~~-~~~~~~~~v~~~~~spdg~~l~sg~~-----Dg~i~ 311 (319)
T 3frx_A 246 SPNRY-WLAAATA-TGIKVFSLDPQ-YLVDDLRPEF-----AG-YSKAAEPHAVSLAWSADGQTLFAGYT-----DNVIR 311 (319)
T ss_dssp CSSSS-EEEEEET-TEEEEEEETTE-EEEEEECCCC-----TT-CCGGGCCCEEEEEECTTSSEEEEEET-----TSCEE
T ss_pred cCCCC-EEEEEcC-CCcEEEEeCcC-eeeeccCccc-----cc-cccCcCcceeEEEECCCCCEEEEeec-----CceEE
Confidence 99998 4666664 45999998763 1111000000 00 00112 23789999999999999999 99999
Q ss_pred EEeecc
Q 011709 460 IYCHLE 465 (479)
Q Consensus 460 i~~~~~ 465 (479)
+|+...
T Consensus 312 vWd~~t 317 (319)
T 3frx_A 312 VWQVMT 317 (319)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 998754
No 17
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.1e-37 Score=290.74 Aligned_cols=250 Identities=14% Similarity=0.169 Sum_probs=201.0
Q ss_pred ccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCce
Q 011709 64 VWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEV 143 (479)
Q Consensus 64 ~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 143 (479)
+-+..++.|.|+ .+++.+ ..+..++||+++.... .........+|.+.|
T Consensus 82 ~~~v~~~~~s~d---------~~l~~~-----s~dg~v~lWd~~~~~~-----------------~~~~~~~~~~H~~~V 130 (344)
T 4gqb_B 82 EAGVADLTWVGE---------RGILVA-----SDSGAVELWELDENET-----------------LIVSKFCKYEHDDIV 130 (344)
T ss_dssp SSCEEEEEEETT---------TEEEEE-----ETTSEEEEEEECTTSS-----------------CEEEEEEEECCSSCE
T ss_pred CCCEEEEEEeCC---------CeEEEE-----ECCCEEEEEeccCCCc-----------------eeEeeccccCCCCCE
Confidence 345678888875 234433 3678899998653111 111133456899999
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecCCCcEEE
Q 011709 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVL 222 (479)
Q Consensus 144 ~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~dg~i~v 222 (479)
++++|+| ++++||+|+.||+|+|||+.++ +++..+.+|.. .|++++|+|++. +|++|+.||+|++
T Consensus 131 ~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~------------~~~~~~~~h~~-~V~~~~~~~~~~~~l~s~s~D~~v~i 196 (344)
T 4gqb_B 131 STVSVLS-SGTQAVSGSKDICIKVWDLAQQ------------VVLSSYRAHAA-QVTCVAASPHKDSVFLSCSEDNRILL 196 (344)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred EEEEECC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEEcCcCC-ceEEEEecCCCCCceeeecccccccc
Confidence 9999999 8899999999999999999987 67788999997 599999999985 6889999999999
Q ss_pred EecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCe
Q 011709 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC 302 (479)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 302 (479)
||++++..... .....|...+.+++|+|++..+|++|+.||+
T Consensus 197 wd~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 197 WDTRCPKPASQ--------------------------------------IGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp EETTSSSCEEE--------------------------------------CC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred ccccccceeee--------------------------------------eecceeeccceeeeecCCCCcceEEeccCCc
Confidence 99976543211 1112355679999999987789999999999
Q ss_pred EEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEec
Q 011709 303 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 382 (479)
Q Consensus 303 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 382 (479)
|++||+++++ ++..+.+|...|++++|+|...++|++|+.||+|+|||++. + .+..+.+|.+.|++++|+|
T Consensus 239 v~~wd~~~~~--~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~------~-~~~~~~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 239 VSLVDTKSTS--CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL------S-ELFRSQAHRDFVRDATWSP 309 (344)
T ss_dssp EEEEESCC----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC------C-EEEEECCCSSCEEEEEECS
T ss_pred EEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC------C-cEEEEcCCCCCEEEEEEeC
Confidence 9999999988 67888899999999999993347899999999999999987 4 4556889999999999999
Q ss_pred CCCcEEEEEeCCCCEEEEeCCCC
Q 011709 383 DKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 383 ~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+++++|+|+|.||+|++|++...
T Consensus 310 ~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp SSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCeEEEEEcCCCeEEEEECCCC
Confidence 99988999999999999999863
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-37 Score=292.35 Aligned_cols=262 Identities=18% Similarity=0.283 Sum_probs=199.0
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
+|.+.|++++|+| ++.+||+|+.|++|+|||+....... ........+.+|.. .|++++|+|++++|++|+.|
T Consensus 56 ~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~-----~~~~~~~~~~~h~~-~V~~v~~sp~g~~las~s~D 128 (330)
T 2hes_X 56 AHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRT-----FEMDLLAIIEGHEN-EVKGVAWSNDGYYLATCSRD 128 (330)
T ss_dssp CCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC------------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETT
T ss_pred CccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCcc-----ccceeEEEEcCCCC-cEEEEEECCCCCEEEEEeCC
Confidence 3999999999999 78899999999999999996531100 01244567889997 59999999999999999999
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
++|++||+.... .....+..+.+|...|.+++|+|++ .+|+++
T Consensus 129 ~~v~iwd~~~~~------------------------------------~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~ 171 (330)
T 2hes_X 129 KSVWIWETDESG------------------------------------EEYECISVLQEHSQDVKHVIWHPSE-ALLASS 171 (330)
T ss_dssp SCEEEEECCTTC------------------------------------CCCEEEEEECCCSSCEEEEEECSSS-SEEEEE
T ss_pred CEEEEEeccCCC------------------------------------CCeEEEEEeccCCCceEEEEECCCC-CEEEEE
Confidence 999999995321 0112235678899999999999998 789999
Q ss_pred ecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCC--CcEEEEEeCCCcEEEEecCCCCCCCC--CCceeeecC-CC
Q 011709 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSADNSVRMFDRRNLTSNGV--GSPINKFEG-HS 372 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~--~~~l~tgs~dg~I~iwd~~~~~~~~~--~~~~~~~~~-h~ 372 (479)
+.|++|++||.+++...++..+.+|...|.+++|+| + +.+|++|+.|++|++||++....... ..+...+.. |.
T Consensus 172 s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~ 250 (330)
T 2hes_X 172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS
T ss_pred cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc
Confidence 999999999998764336777889999999999999 6 67899999999999999976221000 023444554 99
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeE-EEeCCCC--CceeEEEec--CCCeeeec
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF-FQHAGHS--PSSSIKFVL--RESCLVDN 447 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~-~~~~gh~--~~~~~~~sp--~~~~l~~~ 447 (479)
..|.+++|++++ +|++++.||.|+|||+..+ ....+ ....+|. .+.+++|+| ++.+|+++
T Consensus 251 ~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~-------------~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~ 315 (330)
T 2hes_X 251 RQVYNVAWGFNG--LIASVGADGVLAVYEEVDG-------------EWKVFAKRALCHGVYEINVVKWLELNGKTILATG 315 (330)
T ss_dssp SCEEEEEECTTS--CEEEEETTSCEEEEEEETT-------------EEEEEEEESCTTTTSCEEEEEEC-----CCEEEE
T ss_pred cceEEEEEcCCC--EEEEEeCCCEEEEEEcCCC-------------ceEEEeccccccccceEEEEEEecCCCceEEEEe
Confidence 999999999765 4789999999999998652 11122 2335676 489999999 68899999
Q ss_pred CCCccccceeEEEEeec
Q 011709 448 NHGLSYANKKIKIYCHL 464 (479)
Q Consensus 448 ~~~~~~~d~~i~i~~~~ 464 (479)
+. ||.|++|+..
T Consensus 316 s~-----Dg~v~~W~~~ 327 (330)
T 2hes_X 316 GD-----DGIVNFWSLE 327 (330)
T ss_dssp ET-----TSEEEEEEC-
T ss_pred cC-----CCcEEEEEec
Confidence 99 9999999864
No 19
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-38 Score=307.68 Aligned_cols=327 Identities=12% Similarity=0.222 Sum_probs=244.4
Q ss_pred CCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCC
Q 011709 96 SVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN 175 (479)
Q Consensus 96 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~ 175 (479)
+.+..+.||++..... .+....+.|.+.|++++|+| ++.+||+|+.||.|+|||+.....
T Consensus 42 ~~d~~v~iw~~~~~~~-------------------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~ 101 (416)
T 2pm9_A 42 STDSSLELWSLLAADS-------------------EKPIASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANN 101 (416)
T ss_dssp CCCCCCEEEESSSGGG-------------------CSCSCCCCCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTS
T ss_pred CCCCeEEEEEccCCCC-------------------CcEEEEEecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccc
Confidence 6788999997643110 01333457899999999999 888999999999999999987311
Q ss_pred ccccCCCCCCCCcEEEeccCCCceeeeeecCC-CCcEEEecCCCcEEEEecCCCc------cccccCCcccccCCCCCce
Q 011709 176 RHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHI------TSSATDPATAKSAGSSGSI 248 (479)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~-~~~l~s~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~ 248 (479)
.......+.+|.. .|++++|+|+ +.+|++|+.||.|++||+.+.. ...... ...........
T Consensus 102 --------~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~ 170 (416)
T 2pm9_A 102 --------AINSMARFSNHSS-SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG--QSMSSVDEVIS 170 (416)
T ss_dssp --------CCCEEEECCCSSS-CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC--CSCCSSCCCCE
T ss_pred --------cccchhhccCCcc-ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc--cccCCCCCeeE
Confidence 1135667788887 5899999998 8899999999999999998765 211110 00011111111
Q ss_pred eecCC--------CCCCCCCCCCCCCCCCCceeecCC------CCceEEEEEeeCCCcEEEEEecCC---eEEEEeCCCC
Q 011709 249 IKQSP--------KPGDGNDKAADGPSVGPRGIYNGH------EDTVEDVTFCPSSAQEFCSVGDDS---CLILWDARVG 311 (479)
Q Consensus 249 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~l~s~~~dg---~i~iwd~~~~ 311 (479)
+.+.. ...++.+.+|+......+..+..| ...|.+++|+|++..++++++.|+ .|++||++++
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 11111 134677888998888887777776 789999999999877999999999 9999999987
Q ss_pred CCCceeeec-cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEE
Q 011709 312 TSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS 390 (479)
Q Consensus 312 ~~~~~~~~~-~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas 390 (479)
.. ....+. +|...|.+++|+|.++.+|++|+.||.|++||+++ ++++..+.+|...|++++|+|+++.+|++
T Consensus 251 ~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 251 NT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES------AEQLSQFPARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp TS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS------CCEEEEEECSSSCCCCEEECTTCTTEEEE
T ss_pred CC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC------CccceeecCCCCceEEEEECCCCCCEEEE
Confidence 43 455666 89999999999997789999999999999999998 78999999999999999999999557899
Q ss_pred EeCCCCEEEEeCCCCCccccCCC--CCCCCCCeeEEEeCC------------------CCC-ceeEEEecCCCeeeecCC
Q 011709 391 SAEDGLLNIWDYEKVGKKVEQGP--RTTNYPAGLFFQHAG------------------HSP-SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 391 ~s~Dg~v~iwd~~~~~~~~~~~~--~~~~~~~~l~~~~~g------------------h~~-~~~~~~sp~~~~l~~~~~ 449 (479)
++.||.|+|||+........... .....++..+|.+.+ |.. +.+++|+|+|++|++++.
T Consensus 324 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~ 403 (416)
T 2pm9_A 324 ASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD 403 (416)
T ss_dssp CCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT
T ss_pred EecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC
Confidence 99999999999998654433221 112244556666655 554 679999999999999998
Q ss_pred CccccceeEEEEeecc
Q 011709 450 GLSYANKKIKIYCHLE 465 (479)
Q Consensus 450 ~~~~~d~~i~i~~~~~ 465 (479)
|+.|++|+...
T Consensus 404 -----d~~v~~w~~~~ 414 (416)
T 2pm9_A 404 -----GKGVSITNPKI 414 (416)
T ss_dssp -----SSCBCCBCCCC
T ss_pred -----CCeEEEEEecc
Confidence 99999998653
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-35 Score=281.86 Aligned_cols=286 Identities=19% Similarity=0.273 Sum_probs=214.5
Q ss_pred CCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCC
Q 011709 94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 173 (479)
Q Consensus 94 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~ 173 (479)
+++.+..++||++..... ............+|.+.|++++|+| ++.+|++|+.|++|+|||+.++
T Consensus 44 sgs~D~~v~iWd~~~~~~--------------~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~ 108 (343)
T 2xzm_R 44 SGSRDKTVMIWKLYEEEQ--------------NGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTG 108 (343)
T ss_dssp EEETTSCEEEEEECSSCC--------------SSBSEEEEEEECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTSS
T ss_pred EEcCCCEEEEEECCcCCc--------------ccccccccchhccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCC
Confidence 344788999998642110 0000112344568999999999999 7889999999999999999887
Q ss_pred CCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCC
Q 011709 174 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP 253 (479)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (479)
+....+.+|.. .|++++|+|++++|++|+.|++|++||+.......
T Consensus 109 ------------~~~~~~~~h~~-~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~--------------------- 154 (343)
T 2xzm_R 109 ------------TTYKRFVGHQS-EVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS--------------------- 154 (343)
T ss_dssp ------------CEEEEEECCCS-CEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEE---------------------
T ss_pred ------------cEEEEEcCCCC-cEEEEEECCCCCEEEEEcCCCEEEEEeccCCceee---------------------
Confidence 56678899997 59999999999999999999999999986321100
Q ss_pred CCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC---------cEEEEEecCCeEEEEeCCCCCCCceeeeccCCC
Q 011709 254 KPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA---------QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA 324 (479)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 324 (479)
.....+|...|.+++|+|++. .+|++++.||.|++||.+ .. ....+.+|..
T Consensus 155 -----------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~--~~~~~~~h~~ 214 (343)
T 2xzm_R 155 -----------------SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQ--IRYTFKAHES 214 (343)
T ss_dssp -----------------CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TE--EEEEEECCSS
T ss_pred -----------------eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Cc--eeEEEcCccc
Confidence 011236888999999999862 479999999999999943 33 4666779999
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 325 ~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.|++++|+| ++.+|++|+.||.|++||++.. ..+...+. +...|.+++|+|++. +++ ++.|+.|++||+..
T Consensus 215 ~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~-----~~~~~~~~-~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 215 NVNHLSISP-NGKYIATGGKDKKLLIWDILNL-----TYPQREFD-AGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMT 285 (343)
T ss_dssp CEEEEEECT-TSSEEEEEETTCEEEEEESSCC-----SSCSEEEE-CSSCEEEEEECSSSC-EEE-EEESSCEEEEESSS
T ss_pred cceEEEECC-CCCEEEEEcCCCeEEEEECCCC-----cccceeec-CCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCC
Confidence 999999999 9999999999999999999652 23444443 556799999999987 454 55688899999987
Q ss_pred CCcccc-CCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 405 VGKKVE-QGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 405 ~~~~~~-~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
...... .... .+........||.. +.+++|+|++.+|++++. ||.|++|+...
T Consensus 286 ~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~-----Dg~v~~w~~~~ 340 (343)
T 2xzm_R 286 QSKAPVCTIEA---EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT-----DGVIRTFSFET 340 (343)
T ss_dssp CCSCSEEECCC---CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET-----TSEEEEEEEEE
T ss_pred CCCCceEEeec---CcchhhhhhcCCCCceEEEEECCCCCeEEEecC-----CceEEEEEEEc
Confidence 321110 0000 00000111236665 899999999999999999 99999998653
No 21
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.5e-38 Score=295.13 Aligned_cols=258 Identities=19% Similarity=0.296 Sum_probs=204.0
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC--CCCcEEEe
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSG 214 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~--~~~~l~s~ 214 (479)
.+|.+.|++++|+| ++++||+|+.|++|+|||+.++. ......+.+|.. .|++++|++ ++++|++|
T Consensus 10 ~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~----------~~~~~~l~gH~~-~V~~v~~~~~~~~~~l~s~ 77 (316)
T 3bg1_A 10 TSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGG----------QILIADLRGHEG-PVWQVAWAHPMYGNILASC 77 (316)
T ss_dssp ----CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTE----------EEEEEEEECCSS-CEEEEEECCGGGSSCEEEE
T ss_pred ccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCC----------cEEEEEEcCCCc-cEEEEEeCCCCCCCEEEEE
Confidence 48999999999999 88899999999999999998651 124567899997 599999986 38899999
Q ss_pred cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC-CcE
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQE 293 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~ 293 (479)
+.|++|++||++++.. .....+.+|...|++++|+|++ ..+
T Consensus 78 s~D~~v~iWd~~~~~~--------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~ 119 (316)
T 3bg1_A 78 SYDRKVIIWREENGTW--------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLI 119 (316)
T ss_dssp ETTSCEEEECCSSSCC--------------------------------------CEEEEECCCSSCCCEEEECCTTTCSC
T ss_pred ECCCEEEEEECCCCcc--------------------------------------eEEEEccCCCCceEEEEECCCCCCcE
Confidence 9999999999975321 1124567899999999999982 268
Q ss_pred EEEEecCCeEEEEeCCCCCC-CceeeeccCCCCeEEEEecCCC-----------------CcEEEEEeCCCcEEEEecCC
Q 011709 294 FCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLD-----------------DNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~-----------------~~~l~tgs~dg~I~iwd~~~ 355 (479)
|++++.|++|++||++.... .....+.+|...|.+++|+| + +.+|++|+.|+.|++||++.
T Consensus 120 lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~ 198 (316)
T 3bg1_A 120 LACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE 198 (316)
T ss_dssp EEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT
T ss_pred EEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeCC
Confidence 99999999999999987641 12345568999999999999 5 46899999999999999975
Q ss_pred CCCCCCCCceeeecCCCCcEEEEEEecCC---CcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-
Q 011709 356 LTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP- 431 (479)
Q Consensus 356 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~- 431 (479)
... ..++..+.+|...|.+++|+|++ ..+||+++.||+|+|||+....... ....++ .+|..
T Consensus 199 ~~~---~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~--------~~~~~~---~~~~~~ 264 (316)
T 3bg1_A 199 DGQ---WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT--------WSPKLL---HKFNDV 264 (316)
T ss_dssp TSC---EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC--------CBCCEE---EECSSC
T ss_pred CCc---cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc--------hhhhhh---hcCCCc
Confidence 110 13677889999999999999986 2368999999999999997631100 011222 23444
Q ss_pred ceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 432 SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 432 ~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
+.+++|+|++.+|++++. |+.|++|+..
T Consensus 265 v~~v~~sp~g~~las~~~-----D~~v~lw~~~ 292 (316)
T 3bg1_A 265 VWHVSWSITANILAVSGG-----DNKVTLWKES 292 (316)
T ss_dssp EEEEEECTTTCCEEEEES-----SSCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEcC-----CCeEEEEEEC
Confidence 899999999999999999 9999999865
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.9e-37 Score=290.26 Aligned_cols=298 Identities=18% Similarity=0.281 Sum_probs=224.2
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
.+.+|.+.|++|+|+|+++++||||+.||+|+|||+.+.... ...+...+.+|.. .|.+++|+|++++|++|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~-------~~~~~~~l~~h~~-~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN-------YGIPQRALRGHSH-FVSDVVISSDGQFALSG 104 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC-------SEEEEEEECCCSS-CEEEEEECTTSSEEEEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc-------cceeeEEEeCCCC-CEEEEEECCCCCEEEEE
Confidence 456899999999999977899999999999999999876322 1235567889997 59999999999999999
Q ss_pred cCCCcEEEEecCCCccccccCCc----ccccCCCCCceeecCCCCCCCCCCCCCCCCCCC-ceeecCCCCceEEEEEeeC
Q 011709 215 GKDKSVVLWSIQDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP-RGIYNGHEDTVEDVTFCPS 289 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~ 289 (479)
+.|+.|++|+............. ...........+.. ...++.+.+|+...... .....+|...+..++|+++
T Consensus 105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS--GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE--EETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred cccccceEEeecccceeeeecCCCCceeEEEEeecCcccee--ecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 99999999999876432211110 00111111111111 12345666676554332 3445678999999999987
Q ss_pred CC-cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee
Q 011709 290 SA-QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 290 ~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
+. .++++++.|+.|++||+++++ ....+.+|...|++++|+| ++.+|++|+.||.|++||++. ..++..+
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~------~~~~~~~ 253 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCK--LKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE------GKHLYTL 253 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTT------TEEEEEE
T ss_pred CCCcEEEEEcCCCEEEEEECCCCc--eeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEecc------Cceeeee
Confidence 53 467899999999999999987 6778889999999999999 999999999999999999998 6778777
Q ss_pred cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeec
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDN 447 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~ 447 (479)
..+ ..|.+++|+|++. ++ +++.|+.|+|||++.. ...... ..........+|.. |++++|+|++++|+++
T Consensus 254 ~~~-~~v~~~~~~~~~~-~~-~~~~d~~i~iwd~~~~-~~~~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 254 DGG-DIINALCFSPNRY-WL-CAATGPSIKIWDLEGK-IIVDEL-----KQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp ECS-SCEEEEEECSSSS-EE-EEEETTEEEEEETTTT-EEEEEE-----CCC-------CCCCCEEEEEECTTSSEEEEE
T ss_pred cCC-ceEEeeecCCCCc-ee-eccCCCEEEEEECCCC-eEEEec-----cccceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence 754 6899999999876 44 6777999999999873 222111 11122334456665 8999999999999999
Q ss_pred CCCccccceeEEEEeecc
Q 011709 448 NHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 448 ~~~~~~~d~~i~i~~~~~ 465 (479)
+. ||.|++|++..
T Consensus 325 s~-----Dg~v~iW~~~t 337 (340)
T 4aow_A 325 YT-----DNLVRVWQVTI 337 (340)
T ss_dssp ET-----TSCEEEEEEEC
T ss_pred eC-----CCEEEEEeCCC
Confidence 99 99999998764
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-36 Score=311.34 Aligned_cols=294 Identities=19% Similarity=0.261 Sum_probs=227.2
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg 218 (479)
+.+.+.+++|+| ++++||+++. ++|+|||+.++ .....+.+|.. .|++++|+|+|++|++|+.||
T Consensus 17 ~~g~~~~~~~sp-dg~~l~~~~~-~~v~l~~~~~~------------~~~~~~~~h~~-~v~~~~~spdg~~lasg~~d~ 81 (611)
T 1nr0_A 17 ARGTAVVLGNTP-AGDKIQYCNG-TSVYTVPVGSL------------TDTEIYTEHSH-QTTVAKTSPSGYYCASGDVHG 81 (611)
T ss_dssp CTTCCCCCEECT-TSSEEEEEET-TEEEEEETTCS------------SCCEEECCCSS-CEEEEEECTTSSEEEEEETTS
T ss_pred ccCceeEEeeCC-CCCEEEeCCC-CEEEEecCCCc------------ccCeEecCCCC-ceEEEEECCCCcEEEEEeCCC
Confidence 468899999999 8889999884 69999999876 56678899997 599999999999999999999
Q ss_pred cEEEEecCCCccccc--c----CCcccccCCCCCceeecCCCC--CCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 219 SVVLWSIQDHITSSA--T----DPATAKSAGSSGSIIKQSPKP--GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
+|+|||+.++..... . ..............+...... ..+.+.+|+. ......+.+|...|++++|+|++
T Consensus 82 ~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~ 159 (611)
T 1nr0_A 82 NVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSR 159 (611)
T ss_dssp EEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSS
T ss_pred CEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCC
Confidence 999999965432111 0 011111222222222221111 1234556663 44567789999999999999998
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec-
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE- 369 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~- 369 (479)
+..|++++.|++|++||.++.+ +...+.+|...|++++|+| ++.+|++|+.|++|++||++. ++++..+.
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~~--~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~------g~~~~~~~~ 230 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVD------GTKTGVFED 230 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTBE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEECBC
T ss_pred CeEEEEEeCCCeEEEEECCCCe--EeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCC------CcEeeeecc
Confidence 6679999999999999998776 6778889999999999999 999999999999999999987 66777663
Q ss_pred ------CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC---------------------------
Q 011709 370 ------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT--------------------------- 416 (479)
Q Consensus 370 ------~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~--------------------------- 416 (479)
+|.+.|.+++|+|++. +|++++.|++|+|||+..+. .........
T Consensus 231 ~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~ 308 (611)
T 1nr0_A 231 DSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLK-VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308 (611)
T ss_dssp TTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE-EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred ccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCc-eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEE
Confidence 7999999999999999 47899999999999998742 221110000
Q ss_pred --CCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 417 --NYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 417 --~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
...........||.. +.+++|+|++++|++++. |+.|++|+...
T Consensus 309 ~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~-----D~~v~~Wd~~~ 355 (611)
T 1nr0_A 309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA-----EGHINSWDIST 355 (611)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTT
T ss_pred EeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC-----CCcEEEEECCC
Confidence 001123445678877 999999999999999999 99999998654
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-36 Score=285.11 Aligned_cols=266 Identities=16% Similarity=0.261 Sum_probs=202.8
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEE-ec-cCCCceeeeeecCCCCc
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TG-HQDNAEFALAMCPTEPY 210 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~v~~l~~s~~~~~ 210 (479)
.....+|.++|++++|+| + +||+|+.||+|+|||+..+. ......+ .+ |.. .|++++|+|++++
T Consensus 7 ~~~~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~----------~~~~~~~~~~~h~~-~v~~v~~sp~~~~ 72 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDD----------FTLIDVLDETAHKK-AIRSVAWRPHTSL 72 (330)
T ss_dssp EEEEECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSC----------CEEEEEECTTCCCS-CEEEEEECTTSSE
T ss_pred ceeeccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCC----------eEEEEEEecCCccC-CEEEEEECCCCCE
Confidence 344568999999999998 4 99999999999999998651 1223344 34 776 5999999999999
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
|++|+.|++|++||+...... ......+..+.+|...|.+++|+|++
T Consensus 73 las~s~D~~v~iw~~~~~~~~---------------------------------~~~~~~~~~~~~h~~~V~~v~~sp~g 119 (330)
T 2hes_X 73 LAAGSFDSTVSIWAKEESADR---------------------------------TFEMDLLAIIEGHENEVKGVAWSNDG 119 (330)
T ss_dssp EEEEETTSCEEEEEC----------------------------------------CCCEEEEEEC----CEEEEEECTTS
T ss_pred EEEEeCCCcEEEEEcccCcCc---------------------------------cccceeEEEEcCCCCcEEEEEECCCC
Confidence 999999999999998642110 01112346778999999999999998
Q ss_pred CcEEEEEecCCeEEEEeCCCCC--CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee
Q 011709 291 AQEFCSVGDDSCLILWDARVGT--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
.+|++|+.|++|++||++... ..++..+.+|...|.+++|+| ++.+|++|+.|++|++||.+... ..++..+
T Consensus 120 -~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~ 193 (330)
T 2hes_X 120 -YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDD----WECVAVL 193 (330)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE----EEEEEEE
T ss_pred -CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC----eeEEEEc
Confidence 789999999999999996432 124567789999999999999 99999999999999999998621 2578889
Q ss_pred cCCCCcEEEEEEecC--CCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC-CCC-ceeEEEecCCCee
Q 011709 369 EGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HSP-SSSIKFVLRESCL 444 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~--~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g-h~~-~~~~~~sp~~~~l 444 (479)
.+|.+.|.+++|+|+ +. +|++++.|++|+|||+....... ...........+ |.. +.+++|++++ .|
T Consensus 194 ~~h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l 264 (330)
T 2hes_X 194 NGHEGTVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMGDDEDD-------QQEWVCEAILPDVHKRQVYNVAWGFNG-LI 264 (330)
T ss_dssp CCCSSCEEEEEECCSSSSC-EEEEEETTSCEEEEEEEEECTTS-------CEEEEEEEECCSCCSSCEEEEEECTTS-CE
T ss_pred cCCCCcEEEEEecCCCCee-EEEEEeCCCeEEEEEecCCCccc-------cceeEEeeecccccccceEEEEEcCCC-EE
Confidence 999999999999998 44 57899999999999997631100 000122223333 665 8999999765 88
Q ss_pred eecCCCccccceeEEEEeecc
Q 011709 445 VDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 445 ~~~~~~~~~~d~~i~i~~~~~ 465 (479)
++++. ||.|++|+...
T Consensus 265 ~s~~~-----dg~v~iw~~~~ 280 (330)
T 2hes_X 265 ASVGA-----DGVLAVYEEVD 280 (330)
T ss_dssp EEEET-----TSCEEEEEEET
T ss_pred EEEeC-----CCEEEEEEcCC
Confidence 88888 99999998653
No 25
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=301.39 Aligned_cols=327 Identities=13% Similarity=0.075 Sum_probs=227.4
Q ss_pred cccceeeEEecCCcccCC-CcceEEEEEEEe--------------eCCCCCceEEEEEEEecCcchhhhhcccccCcccC
Q 011709 63 LVWPSLSCRWGPQLEQAT-YKNRQRLYLSEQ--------------TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEAR 127 (479)
Q Consensus 63 l~wpsl~~~w~p~~~~~~-~~~~~~l~~~~~--------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 127 (479)
+.++..+++|.|.-.... ....+.|..++. ++++.+..++||+++....
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~---------------- 195 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL---------------- 195 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC----------------
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC----------------
Confidence 467888999998631100 011255555552 4466778888888642110
Q ss_pred CCceeeEEEecCCCceeEEEecCC-----CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeee
Q 011709 128 SPFVKKHKTIIHPGEVNRIRELPQ-----NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFAL 202 (479)
Q Consensus 128 ~~~~~~~~~~~h~~~V~~l~~~p~-----~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l 202 (479)
..........|.+.|++++|+|. ++.+||+|+.||+|+|||+..+....... .....+...+.+|.. .|+++
T Consensus 196 -~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-~~~~~p~~~l~~h~~-~v~sv 272 (524)
T 2j04_B 196 -HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-KMCEKPSLTLSLADS-LITTF 272 (524)
T ss_dssp -CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-ECCCSCSEEECCTTT-CEEEE
T ss_pred -CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-eeecCceEEEEcCCC-CEEEE
Confidence 00012234467899999999994 35799999999999999998763221000 001134567889986 59999
Q ss_pred eecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceE
Q 011709 203 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE 282 (479)
Q Consensus 203 ~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 282 (479)
+|++++ .|++|+.||+|++||++++.. +...+.+|...|.
T Consensus 273 ~~s~~~-~lasgs~DgtV~lWD~~~~~~---------------------------------------~~~~~~~H~~~V~ 312 (524)
T 2j04_B 273 DFLSPT-TVVCGFKNGFVAEFDLTDPEV---------------------------------------PSFYDQVHDSYIL 312 (524)
T ss_dssp EESSSS-EEEEEETTSEEEEEETTBCSS---------------------------------------CSEEEECSSSCEE
T ss_pred EecCCC-eEEEEeCCCEEEEEECCCCCC---------------------------------------ceEEeecccccEE
Confidence 999864 899999999999999975311 1245788999999
Q ss_pred EE--EEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCC--CeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCC
Q 011709 283 DV--TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (479)
Q Consensus 283 ~l--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~ 358 (479)
++ +|+|++..+|+|++.|++|++||+++++ +...+.+|.. .|.+++|+| ++..|++++.|++|++||++.
T Consensus 313 sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~--~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~--- 386 (524)
T 2j04_B 313 SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA--TTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRA--- 386 (524)
T ss_dssp EEEEECCTTSCCEEEEEETTSEEEEECGGGHH--HHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTC---
T ss_pred EEEEEcCCCCCeEEEEeccCCeEEEEECCCCC--cccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcc---
Confidence 99 4566654689999999999999999876 4444555653 588999999 899999999999999999998
Q ss_pred CCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCcccc--------------CCCCCCCC------
Q 011709 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE--------------QGPRTTNY------ 418 (479)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~--------------~~~~~~~~------ 418 (479)
+.++..+.+|.+.|++|+|+|+++. |++|+.||+|+|||+... .... .....+.+
T Consensus 387 ---~~~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~ 461 (524)
T 2j04_B 387 ---AFAVHPLVSRETTITAIGVSRLHPM-VLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRID 461 (524)
T ss_dssp ---TTCCEEEEECSSCEEEEECCSSCCB-CEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEEC
T ss_pred ---cccceeeecCCCceEEEEeCCCCCe-EEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEcc
Confidence 6777888999999999999999995 689999999999997642 1110 00000000
Q ss_pred ----------CCeeEEEeCCCCC-ceeEEEecCCC---eeeecCCCccccceeEEEEeec
Q 011709 419 ----------PAGLFFQHAGHSP-SSSIKFVLRES---CLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 419 ----------~~~l~~~~~gh~~-~~~~~~sp~~~---~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
...++....||.. |.+++|+|++. .+++|+. +|.|+||...
T Consensus 462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~-----~g~vrlw~l~ 516 (524)
T 2j04_B 462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS-----AGLLTLEYLS 516 (524)
T ss_dssp CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT-----TSEEEEEECS
T ss_pred CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc-----CceEEEEEcc
Confidence 1234455667766 99999999964 7888888 9999999753
No 26
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.9e-36 Score=288.68 Aligned_cols=249 Identities=21% Similarity=0.358 Sum_probs=205.0
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
.+...|++++|+| ++.+||+|+.||+|+|||+.++ +....+.+|.. .|++++|+|++.+|++|+.|
T Consensus 121 ~~~~~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d 186 (393)
T 1erj_A 121 SSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENR------------KIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGD 186 (393)
T ss_dssp CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECTTSSEEEEEETT
T ss_pred CCceeEEEEEECC-CCCEEEEEcCCCeEEEEECCCC------------cEEEEEccCCC-CEEEEEEcCCCCEEEEecCC
Confidence 3455699999999 8889999999999999999877 56678899997 59999999999999999999
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
++|++||++++... ..+. +...+.+++|+|.+..+|+++
T Consensus 187 ~~v~iwd~~~~~~~----------------------------------------~~~~-~~~~v~~~~~~~~~~~~l~~~ 225 (393)
T 1erj_A 187 RTVRIWDLRTGQCS----------------------------------------LTLS-IEDGVTTVAVSPGDGKYIAAG 225 (393)
T ss_dssp SEEEEEETTTTEEE----------------------------------------EEEE-CSSCEEEEEECSTTCCEEEEE
T ss_pred CcEEEEECCCCeeE----------------------------------------EEEE-cCCCcEEEEEECCCCCEEEEE
Confidence 99999999764321 2222 456799999999433799999
Q ss_pred ecCCeEEEEeCCCCCCCceeee-------ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCC------CCCCc
Q 011709 298 GDDSCLILWDARVGTSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------GVGSP 364 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~------~~~~~ 364 (479)
+.||.|++||++++. .+..+ .+|...|.+++|+| ++.+|++|+.||.|++||++..... ..+.+
T Consensus 226 s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~ 302 (393)
T 1erj_A 226 SLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302 (393)
T ss_dssp ETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CE
T ss_pred cCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcc
Confidence 999999999999887 44444 57999999999999 9999999999999999999863210 01345
Q ss_pred eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEec----
Q 011709 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVL---- 439 (479)
Q Consensus 365 ~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp---- 439 (479)
...+.+|...|.+++|+|++.+ |++|+.|+.|++||+..+ ..+....||.. +.+++|++
T Consensus 303 ~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~iwd~~~~---------------~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 303 EVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKSG---------------NPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp EEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECSSCTT
T ss_pred eEEEecccCcEEEEEECCCCCE-EEEEeCCCeEEEEECCCC---------------eEEEEECCCCCCEEEEEecCCcCc
Confidence 6678899999999999999985 779999999999999874 33556678877 89999876
Q ss_pred --CCCeeeecCCCccccceeEEEEeecc
Q 011709 440 --RESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 440 --~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
++.+|++++. ||.|++|+...
T Consensus 367 ~p~~~~l~sgs~-----Dg~i~iW~~~~ 389 (393)
T 1erj_A 367 GPEYNVFATGSG-----DCKARIWKYKK 389 (393)
T ss_dssp CTTCEEEEEEET-----TSEEEEEEEEE
T ss_pred CCCCCEEEEECC-----CCcEEECcccc
Confidence 6789999999 99999998654
No 27
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-35 Score=277.67 Aligned_cols=281 Identities=21% Similarity=0.361 Sum_probs=227.3
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|+- ..|.. ++.+..+.+|+..... ......+|...|.+
T Consensus 25 ~v~~~~~s~~~--------~~l~s-----~~~dg~i~iw~~~~~~---------------------~~~~~~~h~~~v~~ 70 (312)
T 4ery_A 25 AVSSVKFSPNG--------EWLAS-----SSADKLIKIWGAYDGK---------------------FEKTISGHKLGISD 70 (312)
T ss_dssp CEEEEEECTTS--------SEEEE-----EETTSCEEEEETTTCC---------------------EEEEECCCSSCEEE
T ss_pred cEEEEEECCCC--------CEEEE-----eeCCCeEEEEeCCCcc---------------------cchhhccCCCceEE
Confidence 67788888852 23332 2367788888642100 12334579999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEec
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~ 225 (479)
++|+| ++++|++|+.||.|++||+.++ +....+.+|.. .|.+++|+|++++|++|+.||.|++||+
T Consensus 71 ~~~~~-~~~~l~s~~~d~~i~vwd~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 136 (312)
T 4ery_A 71 VAWSS-DSNLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDESVRIWDV 136 (312)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred EEEcC-CCCEEEEECCCCEEEEEECCCC------------cEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 99999 8889999999999999999887 56778889987 5899999999999999999999999999
Q ss_pred CCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEE
Q 011709 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 305 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 305 (479)
+++.. +..+..|...|.+++|+|++ .+|++++.||.|++
T Consensus 137 ~~~~~----------------------------------------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~ 175 (312)
T 4ery_A 137 KTGKC----------------------------------------LKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRI 175 (312)
T ss_dssp TTCCE----------------------------------------EEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred CCCEE----------------------------------------EEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEE
Confidence 75322 25667789999999999998 68999999999999
Q ss_pred EeCCCCCCCceeee-ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEE--EEEec
Q 011709 306 WDARVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC--VQWSP 382 (479)
Q Consensus 306 wd~~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~--l~~~p 382 (479)
||+++++ .+..+ ..+...+.+++|+| ++.+|++++.||.|++||++. ++++..+.+|...+.+ ..|++
T Consensus 176 wd~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 176 WDTASGQ--CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp EETTTCC--EEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTT------TEEEEEECSSCCSSSCCCEEEEC
T ss_pred EECCCCc--eeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCC------CcEEEEEEecCCceEEEEEEEEe
Confidence 9999887 44433 45677899999999 999999999999999999998 7788888888765433 34554
Q ss_pred CCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecC-CCccccceeEEE
Q 011709 383 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNN-HGLSYANKKIKI 460 (479)
Q Consensus 383 ~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~-~~~~~~d~~i~i 460 (479)
.+..+|++|+.||.|++||+... +++....+|.. +.+++|+|++..+++++ .. |+.|++
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~----d~~i~~ 307 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTK---------------EIVQKLQGHTDVVISTACHPTENIIASAALEN----DKTIKL 307 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEECSSSSEEEEEECTT----TCCEEE
T ss_pred CCCcEEEEECCCCEEEEEECCCc---------------hhhhhhhccCCcEEEEeecCcCCceEEEEccC----CccEEE
Confidence 43346889999999999999873 45667778877 89999999999999876 22 899999
Q ss_pred Eee
Q 011709 461 YCH 463 (479)
Q Consensus 461 ~~~ 463 (479)
|..
T Consensus 308 W~~ 310 (312)
T 4ery_A 308 WKS 310 (312)
T ss_dssp EEC
T ss_pred ecC
Confidence 974
No 28
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-36 Score=289.81 Aligned_cols=253 Identities=16% Similarity=0.262 Sum_probs=200.1
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeC------CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCc
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTD------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~ 210 (479)
..|.+.|++++|+| ++.+||+|+. |+.|++|+..++.... .......+|.. .|++++|+|++.
T Consensus 39 ~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~--------~~~~~~~~~~~-~V~~~~~s~d~~- 107 (357)
T 4g56_B 39 ACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNE--------SLCTAGVQTEA-GVTDVAWVSEKG- 107 (357)
T ss_dssp -CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CG--------GGCSEEEECSS-CEEEEEEETTTE-
T ss_pred ccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcce--------eEecccCCCCC-CEEEEEEcCCCC-
Confidence 36999999999999 8999999998 7789999987763221 23345567776 499999999975
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
+++++.||+|++||+.++..... ......+|...|++++|+|++
T Consensus 108 ~l~~s~dg~v~lWd~~~~~~~~~------------------------------------~~~~~~~h~~~V~~v~~spdg 151 (357)
T 4g56_B 108 ILVASDSGAVELWEILEKESLLV------------------------------------NKFAKYEHDDIVKTLSVFSDG 151 (357)
T ss_dssp EEEEETTSCEEEC--------CC------------------------------------CCEEECCCSSCEEEEEECSSS
T ss_pred EEEEECCCEEEEeeccccceeEE------------------------------------EeeccCCCCCCEEEEEECCCC
Confidence 55677899999999976433211 013455799999999999999
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceee--e
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK--F 368 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~--~ 368 (479)
.+|++++.||.|++||+++++ .+..+.+|...|++++|+|....++++++.||.|++||+++ ++++.. +
T Consensus 152 -~~l~sgs~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~------~~~~~~~~~ 222 (357)
T 4g56_B 152 -TQAVSGGKDFSVKVWDLSQKA--VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK------PKPATRIDF 222 (357)
T ss_dssp -SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS------SSCBCBCCC
T ss_pred -CEEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC------Cceeeeeee
Confidence 789999999999999999987 77888899999999999994456899999999999999998 455444 3
Q ss_pred cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCC-Ceeee
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRE-SCLVD 446 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~-~~l~~ 446 (479)
..|...+++++|+|++..+||+|+.|+.|++||++.+ ..+....+|.. +.+++|+|++ .+|++
T Consensus 223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---------------~~~~~~~~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---------------DSAQTSAVHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---------------GGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred ccccccccchhhhhcccceEEEeecccceeEEECCCC---------------cEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence 4577889999999998778999999999999999874 22345567766 8999999997 56888
Q ss_pred cCCCccccceeEEEEeecc
Q 011709 447 NNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 447 ~~~~~~~~d~~i~i~~~~~ 465 (479)
++. |+.|++|+...
T Consensus 288 gs~-----D~~i~iwd~~~ 301 (357)
T 4g56_B 288 ISE-----DCTVAVLDADF 301 (357)
T ss_dssp EET-----TSCEEEECTTS
T ss_pred EeC-----CCEEEEEECCC
Confidence 888 99999997643
No 29
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.3e-36 Score=309.28 Aligned_cols=254 Identities=19% Similarity=0.289 Sum_probs=194.8
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
....+|.+.|++++|+| ++.+||+|+.||+|+|||+.++. ......+.+|.+ .|.+++|+|++++|++
T Consensus 53 ~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~----------~~~~~~~~~~~~-~v~~v~fs~dg~~l~~ 120 (611)
T 1nr0_A 53 EIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTT----------HILKTTIPVFSG-PVKDISWDSESKRIAA 120 (611)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTT----------CCEEEEEECSSS-CEEEEEECTTSCEEEE
T ss_pred eEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCc----------ceeeEeecccCC-ceEEEEECCCCCEEEE
Confidence 34458999999999999 88999999999999999997651 133457788987 5999999999999998
Q ss_pred ecCC----CcEEEEecCCCccccccCCcc--cccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 214 GGKD----KSVVLWSIQDHITSSATDPAT--AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 214 ~s~d----g~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
++.+ +.|++||.............. .......... .......++.+.+|+.........+.+|...|.+++|+
T Consensus 121 ~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs 199 (611)
T 1nr0_A 121 VGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 199 (611)
T ss_dssp EECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC
T ss_pred EECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEEC
Confidence 8865 478999864322211111100 0011111110 11122346778889888888888999999999999999
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCCceeeec-------cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCC-
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN- 359 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~- 359 (479)
|++ .+|++++.|++|++||+++++ ....+. +|...|.+++|+| ++.+|++|+.|++|++||+++....
T Consensus 200 pdg-~~las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 200 PDG-SLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp TTS-SEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCC-CEEEEEECCCcEEEEECCCCc--EeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceee
Confidence 998 789999999999999999887 455552 7999999999999 9999999999999999999862100
Q ss_pred ------------------------------------CCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCC
Q 011709 360 ------------------------------------GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 360 ------------------------------------~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~ 403 (479)
..+.++..+.+|...|++++|+|++++ |++++.|++|++||+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 276 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-LFSADAEGHINSWDIS 354 (611)
T ss_dssp EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETT
T ss_pred eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-EEEEeCCCcEEEEECC
Confidence 001123455689999999999999995 7899999999999998
Q ss_pred CC
Q 011709 404 KV 405 (479)
Q Consensus 404 ~~ 405 (479)
.+
T Consensus 355 ~~ 356 (611)
T 1nr0_A 355 TG 356 (611)
T ss_dssp TC
T ss_pred CC
Confidence 74
No 30
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.1e-36 Score=290.01 Aligned_cols=271 Identities=18% Similarity=0.310 Sum_probs=206.0
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCC----CCc--EEEeccCCCceeeeeecC
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNS----RPD--LILTGHQDNAEFALAMCP 206 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~----~~~--~~~~~h~~~~v~~l~~s~ 206 (479)
..+.+.|.+.|++++|+| ++.+||+|+ +++++||++.++............ ... .....+. ..|.+++|+|
T Consensus 57 ~~~~~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD-LYIRSVCFSP 133 (393)
T ss_dssp EEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCC-CBEEEEEECT
T ss_pred eEEecCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCc-eeEEEEEECC
Confidence 445668999999999999 888999987 679999999887432211110000 000 0000111 2489999999
Q ss_pred CCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 207 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
+|++|++|+.||+|++||+.+.. .+..+.+|...|.+++|
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~ 173 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRK----------------------------------------IVMILQGHEQDIYSLDY 173 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCc----------------------------------------EEEEEccCCCCEEEEEE
Confidence 99999999999999999997532 23567889999999999
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
+|++ .+|++++.|++|++||+++++ +...+ .+...+.+++|+|.++.+|++|+.||.|++||+++ +..+.
T Consensus 174 ~p~~-~~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~------~~~~~ 243 (393)
T 1erj_A 174 FPSG-DKLVSGSGDRTVRIWDLRTGQ--CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET------GFLVE 243 (393)
T ss_dssp CTTS-SEEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT------CCEEE
T ss_pred cCCC-CEEEEecCCCcEEEEECCCCe--eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC------CcEEE
Confidence 9999 689999999999999999887 44444 46778999999997889999999999999999988 56665
Q ss_pred ee-------cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEe
Q 011709 367 KF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFV 438 (479)
Q Consensus 367 ~~-------~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~s 438 (479)
.+ .+|...|++++|+|++.. |++++.|+.|++||++.......... ...........||.. +.+++|+
T Consensus 244 ~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~d~~v~~wd~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~ 319 (393)
T 1erj_A 244 RLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKT---PNSGTCEVTYIGHKDFVLSVATT 319 (393)
T ss_dssp EEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEEEEC------------------CEEEEEECCSSCEEEEEEC
T ss_pred eecccccCCCCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEECCCCCCcccccC---CCCCcceEEEecccCcEEEEEEC
Confidence 55 579999999999999985 78999999999999987432211100 011234456678877 8999999
Q ss_pred cCCCeeeecCCCccccceeEEEEeecc
Q 011709 439 LRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 439 p~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
|++.+|++++. |+.|++|+...
T Consensus 320 ~~~~~l~sgs~-----D~~v~iwd~~~ 341 (393)
T 1erj_A 320 QNDEYILSGSK-----DRGVLFWDKKS 341 (393)
T ss_dssp GGGCEEEEEET-----TSEEEEEETTT
T ss_pred CCCCEEEEEeC-----CCeEEEEECCC
Confidence 99999999999 99999998654
No 31
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.6e-37 Score=299.73 Aligned_cols=278 Identities=17% Similarity=0.285 Sum_probs=222.8
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
|..++.|.|.. ..+. +++.+..++||+.+... ......+|.+.|++
T Consensus 110 ~V~~~~~~p~~--------~~l~-----s~s~Dg~i~vwd~~~~~---------------------~~~~l~~h~~~V~~ 155 (410)
T 1vyh_C 110 PVTRVIFHPVF--------SVMV-----SASEDATIKVWDYETGD---------------------FERTLKGHTDSVQD 155 (410)
T ss_dssp CEEEEEECSSS--------SEEE-----EEESSSCEEEEETTTCC---------------------CCEEECCCSSCEEE
T ss_pred cEEEEEEcCCC--------CEEE-----EEeCCCeEEEEECCCCc---------------------EEEEEeccCCcEEE
Confidence 66788888752 2222 33467889999753210 03344589999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEec
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~ 225 (479)
++|+| ++.+||+|+.||+|+|||+.+. .....+.+|.. .|.+++|+|++.+|++|+.|++|++||+
T Consensus 156 v~~~~-~~~~l~sgs~D~~i~iwd~~~~------------~~~~~~~~h~~-~V~~v~~~p~~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 156 ISFDH-SGKLLASCSADMTIKLWDFQGF------------ECIRTMHGHDH-NVSSVSIMPNGDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp EEECT-TSSEEEEEETTSCCCEEETTSS------------CEEECCCCCSS-CEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred EEEcC-CCCEEEEEeCCCeEEEEeCCCC------------ceeEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 99999 7889999999999999999876 55667788987 5999999999999999999999999999
Q ss_pred CCCccccccCCc----ccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC-----------
Q 011709 226 QDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS----------- 290 (479)
Q Consensus 226 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----------- 290 (479)
.++......... ...........+. ....++.+.+|+.........+.+|...|.+++|+|++
T Consensus 222 ~~~~~~~~~~~h~~~v~~~~~~~~g~~l~--s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIA--SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 299 (410)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred CCCcEEEEEeCCCccEEEEEECCCCCEEE--EEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence 876543222110 0011111222222 12356788899999888888999999999999999963
Q ss_pred --------CcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCC
Q 011709 291 --------AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG 362 (479)
Q Consensus 291 --------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~ 362 (479)
..+|++|+.|++|++||++++. ++..+.+|...|.+++|+| ++.+|++|+.||.|++||++. +
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~------~ 370 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKN------K 370 (410)
T ss_dssp C-------CCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTT------S
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECCCCc--eEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC------C
Confidence 2589999999999999999988 6788889999999999999 999999999999999999988 7
Q ss_pred CceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCC
Q 011709 363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 363 ~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~ 403 (479)
+++..+.+|...|++++|+|++.+ |++|+.||+|+|||++
T Consensus 371 ~~~~~~~~h~~~v~~l~~~~~~~~-l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 371 RCMKTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWECR 410 (410)
T ss_dssp CCCEEEECCSSCEEEEEECSSSSC-EEEEETTSEEEEEC--
T ss_pred ceEEEEcCCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEeCC
Confidence 889999999999999999999995 6899999999999974
No 32
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.8e-35 Score=274.09 Aligned_cols=249 Identities=22% Similarity=0.362 Sum_probs=212.0
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.....+|.+.|++++|+| ++.+||+|+.||.|+|||+.++ .....+.+|.. .|.+++|+|++++|+
T Consensus 16 ~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~ 81 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG------------KFEKTISGHKL-GISDVAWSSDSNLLV 81 (312)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTTSSEEE
T ss_pred EEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCc------------ccchhhccCCC-ceEEEEEcCCCCEEE
Confidence 455668999999999999 8889999999999999999877 55667888987 589999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+|+.||.|++||+.++. .+..+.+|...|.+++|+|++ .
T Consensus 82 s~~~d~~i~vwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~~~-~ 120 (312)
T 4ery_A 82 SASDDKTLKIWDVSSGK----------------------------------------CLKTLKGHSNYVFCCNFNPQS-N 120 (312)
T ss_dssp EEETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS-S
T ss_pred EECCCCEEEEEECCCCc----------------------------------------EEEEEcCCCCCEEEEEEcCCC-C
Confidence 99999999999997532 236678899999999999998 7
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee-cCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGH 371 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~-~~h 371 (479)
+|++++.||.|++||+++++ .+..+..|...|.+++|+| ++.+|++|+.||.|++||++. ++.+..+ ..+
T Consensus 121 ~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~------~~~~~~~~~~~ 191 (312)
T 4ery_A 121 LIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS------GQCLKTLIDDD 191 (312)
T ss_dssp EEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEEECCSS
T ss_pred EEEEEeCCCcEEEEECCCCE--EEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CceeeEEeccC
Confidence 89999999999999999988 6778889999999999999 999999999999999999998 5666665 456
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC---ceeEEEe-cCCCeeeec
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP---SSSIKFV-LRESCLVDN 447 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~---~~~~~~s-p~~~~l~~~ 447 (479)
...+..++|+|++++ |++++.||.|++||++.+ ..+....+|.. .....|+ +++.+|+++
T Consensus 192 ~~~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 192 NPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKG---------------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255 (312)
T ss_dssp CCCEEEEEECTTSSE-EEEEETTTEEEEEETTTT---------------EEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred CCceEEEEECCCCCE-EEEEcCCCeEEEEECCCC---------------cEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence 678999999999995 679999999999999874 33445556654 2334455 678889999
Q ss_pred CCCccccceeEEEEeeccc
Q 011709 448 NHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 448 ~~~~~~~d~~i~i~~~~~~ 466 (479)
+. ||.|++|+....
T Consensus 256 ~~-----dg~i~vwd~~~~ 269 (312)
T 4ery_A 256 SE-----DNLVYIWNLQTK 269 (312)
T ss_dssp CT-----TSCEEEEETTTC
T ss_pred CC-----CCEEEEEECCCc
Confidence 98 999999986543
No 33
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-36 Score=290.49 Aligned_cols=292 Identities=13% Similarity=0.180 Sum_probs=230.3
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
+|.+.|++++|+| ++.+||+|+.||.|++|| .++ .....+.+|.. .|.+++|+|++++|++++.|
T Consensus 106 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d 170 (425)
T 1r5m_A 106 KTTNQVTCLAWSH-DGNSIVTGVENGELRLWN-KTG------------ALLNVLNFHRA-PIVSVKWNKDGTHIISMDVE 170 (425)
T ss_dssp --CBCEEEEEECT-TSSEEEEEETTSCEEEEE-TTS------------CEEEEECCCCS-CEEEEEECTTSSEEEEEETT
T ss_pred CCCCceEEEEEcC-CCCEEEEEeCCCeEEEEe-CCC------------CeeeeccCCCc-cEEEEEECCCCCEEEEEecC
Confidence 4788999999999 888999999999999999 333 45667888886 59999999999999999999
Q ss_pred CcEEEEecCCCccccccCCcccc-------------------cCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCC
Q 011709 218 KSVVLWSIQDHITSSATDPATAK-------------------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (479)
|.|++||+.++............ .......+ .....++.+.+|+......+..+.+|.
T Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~i~~~d~~~~~~~~~~~~~~ 247 (425)
T 1r5m_A 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF---VIPGPKGAIFVYQITEKTPTGKLIGHH 247 (425)
T ss_dssp CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEE---EEECGGGCEEEEETTCSSCSEEECCCS
T ss_pred CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEE---EEEcCCCeEEEEEcCCCceeeeeccCC
Confidence 99999999876443222111100 00000111 112345677888888888888999999
Q ss_pred CceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCC
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~ 358 (479)
..|.+++|+|++ .+|++++.||.|++||+++++ ....+..|...|.+++|+| ++ +|++++.||.|++||++.
T Consensus 248 ~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~--- 319 (425)
T 1r5m_A 248 GPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGN--SQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQ--- 319 (425)
T ss_dssp SCEEEEEEETTT-TEEEEEETTSCEEEECSSSBS--CSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTT---
T ss_pred CceEEEEECCCC-CEEEEEcCCCEEEEEECCCCc--cceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCC---
Confidence 999999999998 689999999999999999887 5677778999999999999 77 999999999999999998
Q ss_pred CCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC-----CCCCeeEEEeCCC--C-
Q 011709 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-----NYPAGLFFQHAGH--S- 430 (479)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~l~~~~~gh--~- 430 (479)
+.++..+..|...|.+++|+|++. +|++++.||.|++||++............. ..+..++....+| .
T Consensus 320 ---~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (425)
T 1r5m_A 320 ---NTLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND 395 (425)
T ss_dssp ---TEEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCC
T ss_pred ---CcEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence 788899999999999999999998 578999999999999987421111100000 1122356677777 5
Q ss_pred CceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 431 PSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 431 ~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.+.+++|+|++.+|++++. ||.|++|+..
T Consensus 396 ~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~ 424 (425)
T 1r5m_A 396 YIFDLSWNCAGNKISVAYS-----LQEGSVVAIP 424 (425)
T ss_dssp CEEEEEECTTSSEEEEEES-----SSCCEEEECC
T ss_pred ceEEEEccCCCceEEEEec-----CceEEEEeec
Confidence 6999999999999999998 9999999863
No 34
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.2e-35 Score=280.19 Aligned_cols=257 Identities=19% Similarity=0.302 Sum_probs=204.6
Q ss_pred eEEEecCCCceeEEEe-----cCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC
Q 011709 133 KHKTIIHPGEVNRIRE-----LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 207 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~-----~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~ 207 (479)
.....+|.+.|++++| ++.++.+||+|+.|++|+|||+....... ....+...+.+|.. .|.+++|+|+
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~-----~~~~~~~~l~~h~~-~V~~~~~~~~ 87 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG-----YFGIPHKALTGHNH-FVSDLALSQE 87 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS-----BSEEEEEEECCCSS-CEEEEEECSS
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc-----ccccccchhccCCC-ceEEEEECCC
Confidence 3345689999999999 66688899999999999999997652110 01134567889997 5999999999
Q ss_pred CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 208 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
+.+|++|+.|++|++||++++. .+..+.+|...|.+++|+
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~----------------------------------------~~~~~~~h~~~v~~v~~s 127 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGT----------------------------------------TYKRFVGHQSEVYSVAFS 127 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSC----------------------------------------EEEEEECCCSCEEEEEEC
T ss_pred CCEEEEEcCCCcEEEEECCCCc----------------------------------------EEEEEcCCCCcEEEEEEC
Confidence 9999999999999999997542 236678899999999999
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCC----------cEEEEEeCCCcEEEEecCCCC
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD----------NLILTGSADNSVRMFDRRNLT 357 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~----------~~l~tgs~dg~I~iwd~~~~~ 357 (479)
|++ .+|++++.|++|++||++............|...|.+++|+| ++ .+|++|+.||.|++||.+
T Consensus 128 p~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--- 202 (343)
T 2xzm_R 128 PDN-RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTN--- 202 (343)
T ss_dssp SST-TEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETT---
T ss_pred CCC-CEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCC---
Confidence 999 689999999999999998433111111237889999999999 55 799999999999999954
Q ss_pred CCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEE
Q 011709 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKF 437 (479)
Q Consensus 358 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~ 437 (479)
......+.+|...|++++|+|++++ |++|+.||.|+|||+..... +...+.+ ...+.+++|
T Consensus 203 ----~~~~~~~~~h~~~v~~~~~s~~g~~-l~sgs~dg~v~iwd~~~~~~------------~~~~~~~--~~~v~~v~~ 263 (343)
T 2xzm_R 203 ----FQIRYTFKAHESNVNHLSISPNGKY-IATGGKDKKLLIWDILNLTY------------PQREFDA--GSTINQIAF 263 (343)
T ss_dssp ----TEEEEEEECCSSCEEEEEECTTSSE-EEEEETTCEEEEEESSCCSS------------CSEEEEC--SSCEEEEEE
T ss_pred ----CceeEEEcCccccceEEEECCCCCE-EEEEcCCCeEEEEECCCCcc------------cceeecC--CCcEEEEEE
Confidence 4677888999999999999999995 78999999999999965321 1112222 234899999
Q ss_pred ecCCCeeeecCCCccccceeEEEEeecc
Q 011709 438 VLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 438 sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
+|++.+++++ . |+.|++|+...
T Consensus 264 sp~~~~la~~-~-----d~~v~iw~~~~ 285 (343)
T 2xzm_R 264 NPKLQWVAVG-T-----DQGVKIFNLMT 285 (343)
T ss_dssp CSSSCEEEEE-E-----SSCEEEEESSS
T ss_pred CCCCCEEEEE-C-----CCCEEEEEeCC
Confidence 9999887654 4 56899998654
No 35
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.1e-35 Score=298.24 Aligned_cols=239 Identities=25% Similarity=0.484 Sum_probs=209.3
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
....+|...|.+++|+| ++.+||+|+.||.|++||... +....+.+|.. .|.+++|+|++++|++
T Consensus 338 ~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~-------------~~~~~~~~~~~-~v~~~~~s~dg~~l~~ 402 (577)
T 2ymu_A 338 QTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG-------------QLLQTLTGHSS-SVRGVAFSPDGQTIAS 402 (577)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTC-------------CEEEEEECCSS-CEEEEEECTTSSCEEE
T ss_pred EEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCC-------------CEEEEecCCCC-CeEEEEECCCCCEEEE
Confidence 34467999999999999 888999999999999999643 45667888987 5899999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
++.|+.|++||.... .+..+.+|...|.+++|+|++ .+
T Consensus 403 ~~~d~~v~~~~~~~~-----------------------------------------~~~~~~~~~~~v~~~~~s~d~-~~ 440 (577)
T 2ymu_A 403 ASDDKTVKLWNRNGQ-----------------------------------------LLQTLTGHSSSVWGVAFSPDD-QT 440 (577)
T ss_dssp EETTSEEEEECTTCC-----------------------------------------EEEEEECCSSCEEEEEECTTS-SE
T ss_pred EeCCCEEEEEeCCCC-----------------------------------------EEEEecCCCCCeEEEEECCCC-CE
Confidence 999999999996421 125677899999999999998 78
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 373 (479)
|++++.|+.|++||.. ++ .+..+.+|...|.+++|+| ++.+|++++.|+.|++||.. ++++..+.+|..
T Consensus 441 l~~~~~d~~v~~w~~~-~~--~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~-------~~~~~~~~~h~~ 509 (577)
T 2ymu_A 441 IASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSS 509 (577)
T ss_dssp EEEEETTSEEEEEETT-SC--EEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEETT-------SCEEEEEECCSS
T ss_pred EEEEcCCCEEEEEECC-CC--EEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcCC-------CCEEEEEeCCCC
Confidence 9999999999999964 34 5777789999999999999 99999999999999999964 588999999999
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCcc
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLS 452 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~ 452 (479)
.|++++|+|++++ ||+++.||.|+|||+.. +.+....||.. |.+++|+||+++|++++.
T Consensus 510 ~v~~l~~s~dg~~-l~s~~~dg~v~lwd~~~----------------~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~--- 569 (577)
T 2ymu_A 510 SVRGVAFSPDGQT-IASASDDKTVKLWNRNG----------------QLLQTLTGHSSSVWGVAFSPDGQTIASASS--- 569 (577)
T ss_dssp CEEEEEECTTSSC-EEEEETTSEEEEECTTS----------------CEEEEEECCSSCEEEEEECTTSSCEEEEET---
T ss_pred CEEEEEEcCCCCE-EEEEECcCEEEEEeCCC----------------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeC---
Confidence 9999999999996 68999999999999642 34456678877 899999999999999998
Q ss_pred ccceeEEEEe
Q 011709 453 YANKKIKIYC 462 (479)
Q Consensus 453 ~~d~~i~i~~ 462 (479)
|+.|++|+
T Consensus 570 --D~~i~~Wd 577 (577)
T 2ymu_A 570 --DKTVKLWN 577 (577)
T ss_dssp --TSCEEEEC
T ss_pred --CCEEEEeC
Confidence 99999996
No 36
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.3e-35 Score=276.96 Aligned_cols=306 Identities=16% Similarity=0.281 Sum_probs=231.2
Q ss_pred cceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCcee
Q 011709 65 WPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVN 144 (479)
Q Consensus 65 wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 144 (479)
-+..++.|.|.- .+++... .....+..+.||++.... .......+|.+.|.
T Consensus 19 ~~v~~~~~~p~~--------~~l~~~~-s~~~~d~~v~iw~~~~~~--------------------~~~~~~~~~~~~v~ 69 (357)
T 3i2n_A 19 YTVFDCKWVPCS--------AKFVTMG-NFARGTGVIQLYEIQHGD--------------------LKLLREIEKAKPIK 69 (357)
T ss_dssp SCEEEEEECTTS--------SEEEEEE-C--CCCEEEEEEEECSSS--------------------EEEEEEEEESSCEE
T ss_pred CceEEEEEcCCC--------ceEEEec-CccCCCcEEEEEeCCCCc--------------------ccceeeecccCcEE
Confidence 377899999852 2333211 111237889999765211 11344568999999
Q ss_pred EEEecCCC--CcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeee------eecCCCCcEEEecC
Q 011709 145 RIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFAL------AMCPTEPYVLSGGK 216 (479)
Q Consensus 145 ~l~~~p~~--~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l------~~s~~~~~l~s~s~ 216 (479)
+++|+|.. +.+|++|+.||.|++||+.+.. .....+.+|.. .|.++ +|+|++++|++|+.
T Consensus 70 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~-~v~~~~~~~~~~~s~~~~~l~~~~~ 137 (357)
T 3i2n_A 70 CGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-----------MPVYSVKGHKE-IINAIDGIGGLGIGEGAPEIVTGSR 137 (357)
T ss_dssp EEECTTCCTTTCCEEEEETTSCEEEECTTSCS-----------SCSEEECCCSS-CEEEEEEESGGGCC-CCCEEEEEET
T ss_pred EEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-----------ccEEEEEeccc-ceEEEeeccccccCCCccEEEEEeC
Confidence 99999953 7899999999999999999872 26678889987 58999 56789999999999
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC----CCceEEEE----Eee
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH----EDTVEDVT----FCP 288 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~----~~~ 288 (479)
||.|++||+.+... ++..+..| ...|.+++ |+|
T Consensus 138 d~~i~vwd~~~~~~---------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (357)
T 3i2n_A 138 DGTVKVWDPRQKDD---------------------------------------PVANMEPVQGENKRDCWTVAFGNAYNQ 178 (357)
T ss_dssp TSCEEEECTTSCSS---------------------------------------CSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred CCeEEEEeCCCCCC---------------------------------------cceeccccCCCCCCceEEEEEEeccCC
Confidence 99999999976431 11333333 33788888 677
Q ss_pred CCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCC--CCcEEEEEeCCCcEEEEecCCCCCCCCCCcee
Q 011709 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
++ .++++++.||.|++||+++++ . .....|...|.+++|+|. ++.+|++|+.||.|++||++. +.++.
T Consensus 179 ~~-~~l~~~~~d~~i~i~d~~~~~--~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~ 248 (357)
T 3i2n_A 179 EE-RVVCAGYDNGDIKLFDLRNMA--L-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT------QHPTK 248 (357)
T ss_dssp CC-CEEEEEETTSEEEEEETTTTE--E-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE------EETTT
T ss_pred CC-CEEEEEccCCeEEEEECccCc--e-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC------CCccc
Confidence 77 789999999999999999887 3 334578999999999985 578999999999999999997 44554
Q ss_pred eec-----CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC----CCCCeeEEEeCCCCC-ceeEE
Q 011709 367 KFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT----NYPAGLFFQHAGHSP-SSSIK 436 (479)
Q Consensus 367 ~~~-----~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~----~~~~~l~~~~~gh~~-~~~~~ 436 (479)
.+. +|...|++++|+|+++.+|++++.||.|++||++............. .+....+....+|.. +.+++
T Consensus 249 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (357)
T 3i2n_A 249 GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLD 328 (357)
T ss_dssp EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEE
T ss_pred ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEE
Confidence 444 89999999999999986788999999999999987533321111110 011246677778876 89999
Q ss_pred EecCCCeee-ecCCCccccceeEEEEeecc
Q 011709 437 FVLRESCLV-DNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 437 ~sp~~~~l~-~~~~~~~~~d~~i~i~~~~~ 465 (479)
|+|++.+|+ +++. |+.|++|+...
T Consensus 329 ~s~~~~~l~~s~~~-----d~~i~iw~~~~ 353 (357)
T 3i2n_A 329 WSPDKRGLCVCSSF-----DQTVRVLIVTK 353 (357)
T ss_dssp ECSSSTTEEEEEET-----TSEEEEEEECC
T ss_pred EcCCCCeEEEEecC-----CCcEEEEECCC
Confidence 999999998 7888 99999998764
No 37
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2e-34 Score=299.53 Aligned_cols=287 Identities=17% Similarity=0.245 Sum_probs=217.9
Q ss_pred CCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCC
Q 011709 94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ 173 (479)
Q Consensus 94 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~ 173 (479)
+++.+..+++|++..... ..........+|.+.|.+++|+| ++.+|++|+.||+|+|||+.++
T Consensus 400 s~s~D~~i~~W~~~~~~~----------------~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~ 462 (694)
T 3dm0_A 400 SASRDKSIILWKLTKDDK----------------AYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAG 462 (694)
T ss_dssp EEETTSEEEEEECCCSTT----------------CSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT
T ss_pred EEeCCCcEEEEEccCCCc----------------ccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCC
Confidence 344788899997642110 01112445678999999999999 8899999999999999999887
Q ss_pred CCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCC
Q 011709 174 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP 253 (479)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (479)
.....+.+|.. .|.+++|+|++++|++|+.|++|++||+........
T Consensus 463 ------------~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~-------------------- 509 (694)
T 3dm0_A 463 ------------VSTRRFVGHTK-DVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI-------------------- 509 (694)
T ss_dssp ------------EEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE--------------------
T ss_pred ------------cceeEEeCCCC-CEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceee--------------------
Confidence 56678899997 599999999999999999999999999753211000
Q ss_pred CCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC-cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEec
Q 011709 254 KPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 332 (479)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 332 (479)
.....+|...|.+++|+|++. ..+++++.|++|++||+++.+ +...+.+|...|++++|+
T Consensus 510 -----------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~--~~~~~~~h~~~v~~v~~s 570 (694)
T 3dm0_A 510 -----------------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK--LRSTLAGHTGYVSTVAVS 570 (694)
T ss_dssp -----------------CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEEC
T ss_pred -----------------ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEe
Confidence 012246889999999999862 479999999999999999887 677888999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCC
Q 011709 333 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 412 (479)
Q Consensus 333 p~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~ 412 (479)
| ++.+|++|+.||.|++||+++ ++.+..+.. ...|.+++|+|++. +|+++ .|+.|+|||++.. ..+...
T Consensus 571 p-dg~~l~sg~~Dg~i~iwd~~~------~~~~~~~~~-~~~v~~~~~sp~~~-~l~~~-~~~~i~iwd~~~~-~~~~~~ 639 (694)
T 3dm0_A 571 P-DGSLCASGGKDGVVLLWDLAE------GKKLYSLEA-NSVIHALCFSPNRY-WLCAA-TEHGIKIWDLESK-SIVEDL 639 (694)
T ss_dssp T-TSSEEEEEETTSBCEEEETTT------TEEEECCBC-SSCEEEEEECSSSS-EEEEE-ETTEEEEEETTTT-EEEEEE
T ss_pred C-CCCEEEEEeCCCeEEEEECCC------CceEEEecC-CCcEEEEEEcCCCc-EEEEE-cCCCEEEEECCCC-CChhhh
Confidence 9 999999999999999999998 677777764 46899999999987 45455 4677999999884 222111
Q ss_pred CCCCCCCCe-----eEEEeCCCC-CceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 413 PRTTNYPAG-----LFFQHAGHS-PSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 413 ~~~~~~~~~-----l~~~~~gh~-~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
......... -......+. .+++++|+|++.+|++++. ||.|++|++..
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~-----Dg~i~iW~i~~ 693 (694)
T 3dm0_A 640 KVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT-----DGVIRVWGIGR 693 (694)
T ss_dssp CCCCC----------------CCCCEEEEEECTTSSEEEEEET-----TSEEEEEEC--
T ss_pred ccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC-----CCeEEEEeccC
Confidence 110000000 000011111 2688999999999999999 99999998753
No 38
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-34 Score=301.65 Aligned_cols=254 Identities=21% Similarity=0.363 Sum_probs=211.6
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
....+|.+.|++|+|+|+++++|+||+.||+|+|||+.+.... .......+.+|.. .|.+++|+|++++|++
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~-------~~~~~~~~~~h~~-~v~~v~~s~~g~~l~s 447 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA-------YGVAQRRLTGHSH-FVEDVVLSSDGQFALS 447 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC-------SCEEEEEEECCSS-CEEEEEECTTSSEEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc-------cccccceecCCCC-cEEEEEECCCCCEEEE
Confidence 3466999999999999978899999999999999999875211 1134567899997 5999999999999999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
|+.||+|++||+.++.. ...+.+|...|.+++|+|++ .+
T Consensus 448 gs~Dg~v~vwd~~~~~~----------------------------------------~~~~~~h~~~v~~~~~s~~~-~~ 486 (694)
T 3dm0_A 448 GSWDGELRLWDLAAGVS----------------------------------------TRRFVGHTKDVLSVAFSLDN-RQ 486 (694)
T ss_dssp EETTSEEEEEETTTTEE----------------------------------------EEEEECCSSCEEEEEECTTS-SC
T ss_pred EeCCCcEEEEECCCCcc----------------------------------------eeEEeCCCCCEEEEEEeCCC-CE
Confidence 99999999999975422 25678899999999999998 68
Q ss_pred EEEEecCCeEEEEeCCCCCCC-ceeeeccCCCCeEEEEecCCCC--cEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC
Q 011709 294 FCSVGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDD--NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~l~~sp~~~--~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 370 (479)
|++++.|++|++||+...... ......+|...|.+++|+| ++ .+|++|+.||+|++||++. .+.+..+.+
T Consensus 487 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~------~~~~~~~~~ 559 (694)
T 3dm0_A 487 IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSN------CKLRSTLAG 559 (694)
T ss_dssp EEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTT------CCEEEEECC
T ss_pred EEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCC------CcEEEEEcC
Confidence 999999999999998754411 1111247889999999999 54 6899999999999999998 678889999
Q ss_pred CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCC
Q 011709 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~ 450 (479)
|.+.|++++|+|++. +|++++.||.|+|||++.+ ..+....++..+.+++|+|++.+|+++++
T Consensus 560 h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~---------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~- 622 (694)
T 3dm0_A 560 HTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEG---------------KKLYSLEANSVIHALCFSPNRYWLCAATE- 622 (694)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTT---------------EEEECCBCSSCEEEEEECSSSSEEEEEET-
T ss_pred CCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCC---------------ceEEEecCCCcEEEEEEcCCCcEEEEEcC-
Confidence 999999999999998 5789999999999999884 33444555667899999999988877655
Q ss_pred ccccceeEEEEeecc
Q 011709 451 LSYANKKIKIYCHLE 465 (479)
Q Consensus 451 ~~~~d~~i~i~~~~~ 465 (479)
+.|++|+...
T Consensus 623 -----~~i~iwd~~~ 632 (694)
T 3dm0_A 623 -----HGIKIWDLES 632 (694)
T ss_dssp -----TEEEEEETTT
T ss_pred -----CCEEEEECCC
Confidence 4699998654
No 39
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=275.71 Aligned_cols=295 Identities=12% Similarity=0.131 Sum_probs=231.5
Q ss_pred CCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC
Q 011709 128 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 207 (479)
Q Consensus 128 ~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~ 207 (479)
....+.....+|.+.|++++|+| ++.+||+|+.||.|+|||+.++ .....+.+|.. .|.+++|+|+
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~ 85 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNG------------ERLGTLDGHTG-TIWSIDVDCF 85 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTT
T ss_pred ccccccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCc------------hhhhhhhhcCC-cEEEEEEcCC
Confidence 44556778889999999999999 8889999999999999999887 66778889987 5899999999
Q ss_pred CCcEEEecCCCcEEEEecCCCccccccCC---cccccCCCCCceeecCCC---CCCCCCCCCCCCCC-----------CC
Q 011709 208 EPYVLSGGKDKSVVLWSIQDHITSSATDP---ATAKSAGSSGSIIKQSPK---PGDGNDKAADGPSV-----------GP 270 (479)
Q Consensus 208 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----------~~ 270 (479)
+++|++++.||.|++||+.++........ ............+..... ...+.+.+|+.... ..
T Consensus 86 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 86 TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 99999999999999999987654322211 011111222222221111 11244455544333 23
Q ss_pred ceeecCCCC--ceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcE
Q 011709 271 RGIYNGHED--TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV 348 (479)
Q Consensus 271 ~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I 348 (479)
...+..|.. .+.+++|+|++ .+|++++.||.|++||+++... ....+..|...|.+++|+| ++.+|++++.||.|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i 242 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYE-YVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNS 242 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTE-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred eeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcE-eEEEEecCCCceeEEEECC-CCCEEEEecCCceE
Confidence 455556666 89999999998 6899999999999999998432 5677778999999999999 99999999999999
Q ss_pred EEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCC--------------CEEEEeCCCCCccccCCCC
Q 011709 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--------------LLNIWDYEKVGKKVEQGPR 414 (479)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg--------------~v~iwd~~~~~~~~~~~~~ 414 (479)
++||+++ +..+..+. +...+.+++|+|+++. +++++.++ .+++||+...
T Consensus 243 ~v~d~~~------~~~~~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--------- 305 (369)
T 3zwl_B 243 FLVDVST------LQVLKKYE-TDCPLNTAVITPLKEF-IILGGGQEAKDVTTTSANEGKFEARFYHKIFE--------- 305 (369)
T ss_dssp EEEETTT------CCEEEEEE-CSSCEEEEEECSSSSE-EEEEECCC-------------CEEEEEETTTC---------
T ss_pred EEEECCC------Cceeeeec-CCCCceeEEecCCCce-EEEeecCCCceEEEEecCCCcceeEEEecCCC---------
Confidence 9999998 67777777 7889999999999996 56777777 7999998774
Q ss_pred CCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecccc
Q 011709 415 TTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEAL 467 (479)
Q Consensus 415 ~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~ 467 (479)
..+....+|.. +.+++|+|++.+|++++. ||.|++|+.....
T Consensus 306 ------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 306 ------EEIGRVQGHFGPLNTVAISPQGTSYASGGE-----DGFIRLHHFEKSY 348 (369)
T ss_dssp ------CEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSEEEEEEECHHH
T ss_pred ------cchhheecccCcEEEEEECCCCCEEEEEcC-----CCeEEEEECcccc
Confidence 33445566766 899999999999999999 9999999876643
No 40
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=278.60 Aligned_cols=261 Identities=18% Similarity=0.251 Sum_probs=213.7
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCcEE
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVL 212 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~l~ 212 (479)
...+|.+.|++++|+| ++.+||+|+.||.|+|||+... .......+.+|.. .|++++|+++ +++|+
T Consensus 6 ~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 6 IANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILA 73 (379)
T ss_dssp CEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSS-CEEEEEECCGGGCSEEE
T ss_pred EecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCC----------cceeeeEecCCCC-cEEEEEeCCCCCCCEEE
Confidence 3458999999999999 8889999999999999999844 2255667889987 5999999987 89999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC--C
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--S 290 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~ 290 (479)
+|+.||.|++||+.++.. ..+..+.+|...|.+++|+|+ +
T Consensus 74 s~~~dg~v~iwd~~~~~~--------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~ 115 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG 115 (379)
T ss_dssp EEETTSCEEEEEEETTEE--------------------------------------EEEEEECCCSSCEEEEEECCGGGC
T ss_pred EeccCCEEEEEEcCCCce--------------------------------------eEeeeecCCCcceEEEEeCCCCCC
Confidence 999999999999975421 122566779999999999998 6
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCC------------CCcEEEEEeCCCcEEEEecCCCCC
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTS 358 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~------------~~~~l~tgs~dg~I~iwd~~~~~~ 358 (479)
.+|++++.||.|++||+++........+..|...|.+++|+|. ++.+|++|+.||.|++||++....
T Consensus 116 -~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 194 (379)
T 3jrp_A 116 -PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 194 (379)
T ss_dssp -SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred -CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence 7899999999999999998864455566789999999999994 489999999999999999987321
Q ss_pred CCCCCceeeecCCCCcEEEEEEecC---CCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-cee
Q 011709 359 NGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSS 434 (479)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~l~~~p~---~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~ 434 (479)
. ...+..+.+|...|++++|+|+ +. +|++++.||.|+|||++...... ...+....+|.. +.+
T Consensus 195 ~--~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~~~~~~v~~ 261 (379)
T 3jrp_A 195 T--YVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPW----------KKTLLKEEKFPDVLWR 261 (379)
T ss_dssp E--EEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEEEEESSTTSCC----------EEEESSSSCCSSCEEE
T ss_pred c--eeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEEEeCCCCCccc----------eeeeeccccCCCcEEE
Confidence 0 1245678899999999999999 55 68899999999999998742110 111222233444 899
Q ss_pred EEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 435 IKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 435 ~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
++|+|++.+|++++. ||.|++|+..
T Consensus 262 ~~~s~~g~~l~~~~~-----dg~i~iw~~~ 286 (379)
T 3jrp_A 262 ASWSLSGNVLALSGG-----DNKVTLWKEN 286 (379)
T ss_dssp EEECSSSCCEEEEES-----SSSEEEEEEE
T ss_pred EEEcCCCCEEEEecC-----CCcEEEEeCC
Confidence 999999999999999 9999999876
No 41
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.4e-35 Score=290.92 Aligned_cols=289 Identities=15% Similarity=0.183 Sum_probs=210.4
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC-CCCcEEE
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLS 213 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-~~~~l~s 213 (479)
...+|...|++|+|+|.++++||+|+.||+|+|||+.+.. ......+.+|.+ .|++|+|+| ++.+|++
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~----------~~~~~~~~gH~~-~V~~l~f~p~~~~~l~s 182 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD----------KPTFIKGIGAGG-SITGLKFNPLNTNQFYA 182 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS----------CCEEECCCSSSC-CCCEEEECSSCTTEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC----------ceeEEEccCCCC-CEEEEEEeCCCCCEEEE
Confidence 3457899999999999888999999999999999998762 123344568887 599999998 5789999
Q ss_pred ecCCCcEEEEecCCCccccccCCcc------cccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPAT------AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
|+.||+|++||+++........... ..........+.. ...++.+.+|+... ..+..+.+|...|++++|+
T Consensus 183 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 183 SSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT--GDNVGNVILLNMDG-KELWNLRMHKKKVTHVALN 259 (435)
T ss_dssp ECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEE--ECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEEC
T ss_pred EeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEE--EeCCCcEeeeccCc-ceeEEEecccceEEeeeec
Confidence 9999999999998653321111100 0111112222222 23456677777653 4567788999999999999
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCC-ceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
|++..+|++++.|+.|++||+++.... ......+|...|++++|+| ++.+|++|+.||.|+|||++. +....
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~------~~~~~ 332 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQ------WDCPL 332 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSS------SSSEE
T ss_pred CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCC------Cccce
Confidence 998778999999999999999987632 2223357999999999999 999999999999999999998 55665
Q ss_pred eecCCCC------cEEEEEEecCCCcEEEEE-----------eCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEE-eCC
Q 011709 367 KFEGHSA------AVLCVQWSPDKSSVFGSS-----------AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAG 428 (479)
Q Consensus 367 ~~~~h~~------~v~~l~~~p~~~~llas~-----------s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~-~~g 428 (479)
.+..|.. .+..+.|+|++..+++.. ..++.|++||+.++ .++.. ..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---------------~~~~~l~~~ 397 (435)
T 4e54_B 333 GLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---------------KMMCQLYDP 397 (435)
T ss_dssp EECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---------------CEEEEECCS
T ss_pred EEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---------------cEEEEEeCC
Confidence 5555442 233456777666433222 23467999998874 22222 345
Q ss_pred CCC-ceeE-EEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 429 HSP-SSSI-KFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 429 h~~-~~~~-~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
|.. +.++ +|+|++.+|+++++ +.|++|+..+
T Consensus 398 ~~~~v~s~~~fspdg~~lasg~d------~~i~iW~~~~ 430 (435)
T 4e54_B 398 ESSGISSLNEFNPMGDTLASAMG------YHILIWSQQE 430 (435)
T ss_dssp SCCCCCCEEEECTTSSCEEEECS------SEEEECCCC-
T ss_pred CCCcEEEEEEECCCCCEEEEEcC------CcEEEEECCc
Confidence 555 7776 69999999988654 5899998654
No 42
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.9e-35 Score=277.63 Aligned_cols=301 Identities=18% Similarity=0.262 Sum_probs=227.8
Q ss_pred cceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCcee
Q 011709 65 WPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVN 144 (479)
Q Consensus 65 wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 144 (479)
-|..++.|.|.... ....++.+. .++.+.+|++..... +. .+.......|.+.|+
T Consensus 19 ~~v~~i~~~p~~~~----~~~~~~~~~-----~~~~v~vw~~~~~~~-------~~---------~~~~~~~~~~~~~v~ 73 (366)
T 3k26_A 19 QPLFGVQFNWHSKE----GDPLVFATV-----GSNRVTLYECHSQGE-------IR---------LLQSYVDADADENFY 73 (366)
T ss_dssp SCEEEEEECTTCCT----TSCEEEEEE-----ETTEEEEEEECGGGC-------EE---------EEEEEECSCTTCCEE
T ss_pred CceEEEEEecccCC----CCceEEEEC-----CCCEEEEEEcCCCcE-------EE---------eeeeccccCCCCcEE
Confidence 37889999985111 113344333 234789997652111 00 011122224789999
Q ss_pred EEEecCCC---CcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC-CCCcEEEecCCCcE
Q 011709 145 RIRELPQN---TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDKSV 220 (479)
Q Consensus 145 ~l~~~p~~---~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-~~~~l~s~s~dg~i 220 (479)
+++|+|+. +.+|++|+.||.|+|||+.++ +....+.+|.. .|.+++|+| ++.+|++|+.||.|
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~~l~s~~~dg~i 140 (366)
T 3k26_A 74 TCAWTYDSNTSHPLLAVAGSRGIIRIINPITM------------QCIKHYVGHGN-AINELKFHPRDPNLLLSVSKDHAL 140 (366)
T ss_dssp EEEEEECTTTCCEEEEEEETTCEEEEECTTTC------------CEEEEEESCCS-CEEEEEECSSCTTEEEEEETTSCE
T ss_pred EEEeccCCCCCCCEEEEecCCCEEEEEEchhc------------eEeeeecCCCC-cEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999942 679999999999999999887 56677888987 599999999 89999999999999
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee---cCCCCceEEEEEeeCCCcEEEEE
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY---NGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
++||+.++... ..+ .+|...|.+++|+|++ .+|+++
T Consensus 141 ~iwd~~~~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 179 (366)
T 3k26_A 141 RLWNIQTDTLV----------------------------------------AIFGGVEGHRDEVLSADYDLLG-EKIMSC 179 (366)
T ss_dssp EEEETTTTEEE----------------------------------------EEECSTTSCSSCEEEEEECTTS-SEEEEE
T ss_pred EEEEeecCeEE----------------------------------------EEecccccccCceeEEEECCCC-CEEEEe
Confidence 99999754321 233 5789999999999998 689999
Q ss_pred ecCCeEEEEeCCCCCCC--------------------------ceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEE
Q 011709 298 GDDSCLILWDARVGTSP--------------------------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 351 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~--------------------------~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iw 351 (479)
+.||.|++||+++++.. .......|...|.+++|+ +.+|++++.||.|++|
T Consensus 180 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~w 256 (366)
T 3k26_A 180 GMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCW 256 (366)
T ss_dssp ETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEE
T ss_pred cCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEE
Confidence 99999999999976510 111223499999999998 4699999999999999
Q ss_pred ecCCCCCC--------CCCCceeeecCCCCcEEEEEEecC--CCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCe
Q 011709 352 DRRNLTSN--------GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG 421 (479)
Q Consensus 352 d~~~~~~~--------~~~~~~~~~~~h~~~v~~l~~~p~--~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 421 (479)
|++..... .....+..+.+|...|++++|+|+ +. +|++++.||.|++||+..+. .. ..
T Consensus 257 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg~i~vwd~~~~~-~~----------~~ 324 (366)
T 3k26_A 257 KPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVGKLYVWDLEVED-PH----------KA 324 (366)
T ss_dssp EESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTSCEEEEECCSSS-GG----------GC
T ss_pred eCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCCcEEEEECCCCC-Cc----------cc
Confidence 99874310 001347778889999999999999 88 57899999999999998742 11 12
Q ss_pred eEEEeCCC---CCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 422 LFFQHAGH---SPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 422 l~~~~~gh---~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
......+| ..+.+++|+|++.+|++++. ||.|++|+..
T Consensus 325 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----dg~i~iwd~~ 365 (366)
T 3k26_A 325 KCTTLTHHKCGAAIRQTSFSRDSSILIAVCD-----DASIWRWDRL 365 (366)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSSEEEEEET-----TSEEEEEEC-
T ss_pred cceEEcccccCCceEEEEeCCCCCeEEEEeC-----CCEEEEEEec
Confidence 34455666 44999999999999999999 9999999864
No 43
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.2e-34 Score=276.79 Aligned_cols=295 Identities=13% Similarity=0.162 Sum_probs=229.7
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|. .|+. ++.+..+.||++..... ..+.........|.+.|++
T Consensus 18 ~i~~~~~~~~----------~l~s-----~~~dg~i~iw~~~~~~~---------------~~~~~~~~~~~~h~~~v~~ 67 (397)
T 1sq9_A 18 DIFSVSACNS----------FTVS-----CSGDGYLKVWDNKLLDN---------------ENPKDKSYSHFVHKSGLHH 67 (397)
T ss_dssp CEEEEEECSS----------EEEE-----EETTSEEEEEESBCCTT---------------CCGGGGEEEEECCTTCEEE
T ss_pred CeEEEEecCC----------eEEE-----EcCCCEEEEEECCCccc---------------ccCCCcceEEecCCCcEEE
Confidence 7788999771 3332 23678999998653211 0111124556689999999
Q ss_pred EEecCCC----C---cEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccC----CCceeeeeec----CCCCc
Q 011709 146 IRELPQN----T---KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----DNAEFALAMC----PTEPY 210 (479)
Q Consensus 146 l~~~p~~----~---~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~----~~~v~~l~~s----~~~~~ 210 (479)
++|+| + + .+|++++.||.|++||+.+..... ......+.+|. ...|.+++|+ |++++
T Consensus 68 ~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 139 (397)
T 1sq9_A 68 VDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETK-------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH 139 (397)
T ss_dssp EEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTC-------CEEEEEECCSCTTGGGSCEEEEEEECCC----CE
T ss_pred EEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccc-------cccceeecccccccCCCcEEEEEEeeccCCCCce
Confidence 99999 6 8 899999999999999998872100 01156777884 2369999999 99999
Q ss_pred -EEEecCCCcEEEEecCC------CccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee-------cC
Q 011709 211 -VLSGGKDKSVVLWSIQD------HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-------NG 276 (479)
Q Consensus 211 -l~s~s~dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 276 (479)
|++|+.||.|++||+.. ..... ..+...+ ..
T Consensus 140 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~ 184 (397)
T 1sq9_A 140 RLVATDVKGTTYIWKFHPFADESNSLTLN-----------------------------------WSPTLELQGTVESPMT 184 (397)
T ss_dssp EEEEEETTSCEEEEEEESSSSHHHHTTTC-----------------------------------CCCEEEEEEEECCSSS
T ss_pred EEEEEeCCCcEEEEeCCccccccccceee-----------------------------------ccCcceeeeeeccccC
Confidence 99999999999999976 22110 0011133 44
Q ss_pred CCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeecc---C---CCCeEEEEecCCCCcEEEEEeCC---Cc
Q 011709 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---H---DADLHCVDWNPLDDNLILTGSAD---NS 347 (479)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~---~~~v~~l~~sp~~~~~l~tgs~d---g~ 347 (479)
|...|.+++|+|++ +|++++.||.|++||+++++ .+..+.. | ...|.+++|+| ++.+|++++.| |.
T Consensus 185 ~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~ 259 (397)
T 1sq9_A 185 PSQFATSVDISERG--LIATGFNNGTVQISELSTLR--PLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGC 259 (397)
T ss_dssp SCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--EEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEE
T ss_pred CCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc--eeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCce
Confidence 88899999999988 89999999999999999877 6777777 8 99999999999 89999999999 99
Q ss_pred EEEEecCCCCCCCCCCceeeecC-------------CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCC
Q 011709 348 VRMFDRRNLTSNGVGSPINKFEG-------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 414 (479)
Q Consensus 348 I~iwd~~~~~~~~~~~~~~~~~~-------------h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~ 414 (479)
|++||+++ ++++..+.+ |...|.+++|+|++++ |++++.||.|+|||++..
T Consensus 260 i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~--------- 323 (397)
T 1sq9_A 260 ITLYETEF------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKTK--------- 323 (397)
T ss_dssp EEEEETTT------CCEEEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTT---------
T ss_pred EEEEECCC------CcccceeccCcccccccccccccCCcEEEEEECCCCCE-EEEEeCCCeEEEEEcCCC---------
Confidence 99999998 788889988 9999999999999984 789999999999999874
Q ss_pred CCCCCCeeEEEeC------CC---------------CC-ceeEEEecCC----------CeeeecCCCccccceeEEEEe
Q 011709 415 TTNYPAGLFFQHA------GH---------------SP-SSSIKFVLRE----------SCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 415 ~~~~~~~l~~~~~------gh---------------~~-~~~~~~sp~~----------~~l~~~~~~~~~~d~~i~i~~ 462 (479)
+.+.... +| .. +.+++|+|++ .+|++++. ||.|++|+
T Consensus 324 ------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~-----dg~i~iw~ 392 (397)
T 1sq9_A 324 ------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL-----DRSIRWFR 392 (397)
T ss_dssp ------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET-----TTEEEEEE
T ss_pred ------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC-----CCcEEEEE
Confidence 2233333 44 44 9999999998 79999998 99999998
Q ss_pred ecc
Q 011709 463 HLE 465 (479)
Q Consensus 463 ~~~ 465 (479)
...
T Consensus 393 ~~~ 395 (397)
T 1sq9_A 393 EAG 395 (397)
T ss_dssp EEC
T ss_pred cCC
Confidence 753
No 44
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.7e-34 Score=272.21 Aligned_cols=279 Identities=16% Similarity=0.250 Sum_probs=217.0
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC--CCCcEEE
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLS 213 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~--~~~~l~s 213 (479)
..+|.+.|++++|+| ++.+||+|+.||.|+|||+.+.... ......+.+|.. .|++++|+| ++.+|++
T Consensus 7 ~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~~~~~-~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSN--------WELSDSWRAHDS-SIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp ECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCC--------EEEEEEEECCSS-CEEEEEECCGGGCSEEEE
T ss_pred CcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCc--------ceecceeccCCC-cEEEEEEcCCCCCCEEEE
Confidence 358999999999999 8889999999999999999875211 134567788987 599999999 5899999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC--CC
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SA 291 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~ 291 (479)
|+.||.|++||++.+..... .....++..+.+|...|.+++|+|+ +
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 124 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECS-------------------------------GRRWNKLCTLNDSKGSLYSVKFAPAHLG- 124 (351)
T ss_dssp EETTSCEEEEEECTTSCTTS-------------------------------SCSEEEEEEECCCSSCEEEEEECCGGGC-
T ss_pred EcCCCeEEEEecCCCccccc-------------------------------ccCcceeeeecccCCceeEEEEcCCCCC-
Confidence 99999999999976432110 0111234667789999999999998 7
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCcee-----------eeccCCCCeEEEEecCC--CCcEEEEEeCCCcEEEEecCCCCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIK-----------VEKAHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTS 358 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~-----------~~~~~~~~v~~l~~sp~--~~~~l~tgs~dg~I~iwd~~~~~~ 358 (479)
.+|++++.||.|++||+++++..... ....|...+.+++|+|. ++.+|++++.|+.+.+|+.....
T Consensus 125 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~- 203 (351)
T 3f3f_A 125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK- 203 (351)
T ss_dssp SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-
T ss_pred cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-
Confidence 78999999999999999987631111 11267889999999993 28999999999999888877621
Q ss_pred CCCCCceeeecCCCCcEEEEEEecCCC---cEEEEEeCCCCEEEEeCCCCCccccCCCCC--------------------
Q 011709 359 NGVGSPINKFEGHSAAVLCVQWSPDKS---SVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-------------------- 415 (479)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~l~~~p~~~---~llas~s~Dg~v~iwd~~~~~~~~~~~~~~-------------------- 415 (479)
...+..+.+|...|++++|+|++. .+|++++.||.|++||++............
T Consensus 204 ---~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (351)
T 3f3f_A 204 ---LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRS 280 (351)
T ss_dssp ---EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------
T ss_pred ---eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccc
Confidence 224778889999999999999982 368899999999999998742211110000
Q ss_pred -----------CCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 416 -----------TNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 416 -----------~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
......++....+|.. +++++|+|++.+|++++. ||.|++|+...
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-----dg~v~iw~~~~ 337 (351)
T 3f3f_A 281 DSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD-----DGKVRLWKATY 337 (351)
T ss_dssp ----------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEET-----TSCEEEEEECT
T ss_pred ccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecC-----CCcEEEEecCc
Confidence 0012356777888877 999999999999999999 99999998764
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.9e-34 Score=268.99 Aligned_cols=285 Identities=18% Similarity=0.264 Sum_probs=226.4
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEe--ccCCCceeeeeecCCCCc
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEPY 210 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~l~~s~~~~~ 210 (479)
.....+|.+.|++++|+| ++.+|++++ ||.|++||+.+.... .....+. +|.. .|.+++|+|++++
T Consensus 44 ~~~~~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~---------~~~~~~~~~~~~~-~v~~~~~~~~~~~ 111 (337)
T 1gxr_A 44 QINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNK---------SPVSQLDCLNRDN-YIRSCKLLPDGCT 111 (337)
T ss_dssp EEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCC---------SCSEEEECSCTTS-BEEEEEECTTSSE
T ss_pred cceeccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCce---------eeeecccccCCCC-cEEEEEEcCCCCE
Confidence 556679999999999999 888999999 999999999876322 2333444 6665 6999999999999
Q ss_pred EEEecCCCcEEEEecCCCccccc--cC--C--cccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEE
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSA--TD--P--ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 284 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~--~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 284 (479)
|++++.||.|++||+.+...... .. . ............+.. ...++.+.+|+......+..+.+|...|.++
T Consensus 112 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 189 (337)
T 1gxr_A 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS--CCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 189 (337)
T ss_dssp EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEE--EeCCCcEEEEeCCCCceeeeeecccCceEEE
Confidence 99999999999999987642111 10 0 001111222222222 1245678889988888888999999999999
Q ss_pred EEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCc
Q 011709 285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 364 (479)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~ 364 (479)
+|+|++ .+|++++.||.|++||+++++ ..... .+...+.+++|+| ++.+|++++.||.|++||++. . .
T Consensus 190 ~~~~~~-~~l~~~~~dg~i~~~d~~~~~--~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~------~-~ 257 (337)
T 1gxr_A 190 DISNDG-TKLWTGGLDNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNK------P-D 257 (337)
T ss_dssp EECTTS-SEEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS------S-C
T ss_pred EECCCC-CEEEEEecCCcEEEEECCCCc--eEeee-cCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCC------C-C
Confidence 999998 789999999999999999887 44444 5788999999999 999999999999999999987 3 3
Q ss_pred eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCee
Q 011709 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCL 444 (479)
Q Consensus 365 ~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l 444 (479)
...+..|...|.+++|+|++++ |++++.||.|++||+... ..++.......+.+++|+|++.+|
T Consensus 258 ~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~~~~~~---------------~~~~~~~~~~~v~~~~~s~~~~~l 321 (337)
T 1gxr_A 258 KYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYG---------------ASIFQSKESSSVLSCDISVDDKYI 321 (337)
T ss_dssp EEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTC---------------CEEEEEECSSCEEEEEECTTSCEE
T ss_pred eEEEcCCccceeEEEECCCCCE-EEEecCCCcEEEEECCCC---------------eEEEEecCCCcEEEEEECCCCCEE
Confidence 4567889999999999999994 789999999999999874 222333334558999999999999
Q ss_pred eecCCCccccceeEEEEeec
Q 011709 445 VDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 445 ~~~~~~~~~~d~~i~i~~~~ 464 (479)
++++. ||.|++|+..
T Consensus 322 ~~~~~-----dg~i~iw~~~ 336 (337)
T 1gxr_A 322 VTGSG-----DKKATVYEVI 336 (337)
T ss_dssp EEEET-----TSCEEEEEEE
T ss_pred EEecC-----CCeEEEEEEe
Confidence 99998 9999999864
No 46
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.2e-33 Score=270.36 Aligned_cols=317 Identities=9% Similarity=0.084 Sum_probs=221.0
Q ss_pred ccccccceeeEEecCCcccCCCcceEEEEEEEe--eCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEe
Q 011709 60 NHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQ--TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTI 137 (479)
Q Consensus 60 ~~~l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (479)
.+++..|.+++.|.|+- +.|.-|.. +..+.+|.|.+|+++....... ..+ ........-
T Consensus 10 ~~~~g~PV~sv~fs~dg--------~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~--~~~---------~~~~~~~l~ 70 (365)
T 4h5i_A 10 SYNVGYPAYGAKFLNND--------TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK--EQF---------HILSEFALE 70 (365)
T ss_dssp EEECSSCEEEEEEEETT--------EEEEEEECCSSSSSCCEEEEEEEECTTSSSHH--HHE---------EEEEEEECC
T ss_pred ecCCCCCEEEEEEeCCC--------cEEEEECCCccccCCCCEEEEEEEcCCCccee--eee---------eeeeEEEcc
Confidence 55678899999999862 33333321 1123688999998764221100 000 011133445
Q ss_pred cCCCceeEEEecCCCCcEEEEE-----------eCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC
Q 011709 138 IHPGEVNRIRELPQNTKIVATH-----------TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~-----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 206 (479)
.|...|.++++.+ +.+++| +.|+++++|++............ ........+.. .+.+++|+|
T Consensus 71 ~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~v~fSp 143 (365)
T 4h5i_A 71 DNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS---VDFDASTNADD-YTKLVYISR 143 (365)
T ss_dssp TTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE---ECSSCCCCTTC-CEEEEEECT
T ss_pred CCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeee---eceeecCCccc-CEEEEEEcC
Confidence 7888999998754 466665 44778999998765321110000 00000112222 478999999
Q ss_pred CCCcEE--EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEE
Q 011709 207 TEPYVL--SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 284 (479)
Q Consensus 207 ~~~~l~--s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 284 (479)
||++|+ +++.|++|++||+.+... +..+. |...|.++
T Consensus 144 Dg~~la~as~~~d~~i~iwd~~~~~~----------------------------------------~~~~~-~~~~V~~v 182 (365)
T 4h5i_A 144 EGTVAAIASSKVPAIMRIIDPSDLTE----------------------------------------KFEIE-TRGEVKDL 182 (365)
T ss_dssp TSSCEEEEESCSSCEEEEEETTTTEE----------------------------------------EEEEE-CSSCCCEE
T ss_pred CCCEEEEEECCCCCEEEEeECCCCcE----------------------------------------EEEeC-CCCceEEE
Confidence 999876 455799999999976432 13333 67789999
Q ss_pred EEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC----cEEEEecCCCCCCC
Q 011709 285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----SVRMFDRRNLTSNG 360 (479)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg----~I~iwd~~~~~~~~ 360 (479)
+|+|++ .++++++.+ .+++|+..++..........|...|.+++|+| ++.++++++.|+ .+++||+......
T Consensus 183 ~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~- 258 (365)
T 4h5i_A 183 HFSTDG-KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTS- 258 (365)
T ss_dssp EECTTS-SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEE-
T ss_pred EEccCC-ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceec-
Confidence 999999 688888755 56677777766333344557899999999999 999999999887 6888998762100
Q ss_pred CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEE-eCCCCC-ceeEEEe
Q 011709 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHSP-SSSIKFV 438 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~-~~gh~~-~~~~~~s 438 (479)
......+.+|..+|++++|+|+++ +||+|+.|++|+|||++++ +.+.. ..||.. |++++|+
T Consensus 259 -~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~---------------~~~~~~~~gH~~~V~~v~fS 321 (365)
T 4h5i_A 259 -VLRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDL---------------SMSKIFKQAHSFAITEVTIS 321 (365)
T ss_dssp -EEEEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTT---------------EEEEEETTSSSSCEEEEEEC
T ss_pred -ceeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCC---------------cEEEEecCcccCCEEEEEEC
Confidence 112456778999999999999999 5889999999999999874 33433 578887 9999999
Q ss_pred cCCCeeeecCCCccccceeEEEEeecccccc
Q 011709 439 LRESCLVDNNHGLSYANKKIKIYCHLEALKS 469 (479)
Q Consensus 439 p~~~~l~~~~~~~~~~d~~i~i~~~~~~~~~ 469 (479)
||+++|++++. |++|+||++...+..
T Consensus 322 pdg~~laS~S~-----D~tvrvw~ip~~~~~ 347 (365)
T 4h5i_A 322 PDSTYVASVSA-----ANTIHIIKLPLNYAN 347 (365)
T ss_dssp TTSCEEEEEET-----TSEEEEEECCTTTTC
T ss_pred CCCCEEEEEeC-----CCeEEEEEcCCCCcC
Confidence 99999999999 999999998765543
No 47
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-33 Score=271.57 Aligned_cols=247 Identities=20% Similarity=0.341 Sum_probs=208.1
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
..|.+.|.+++|+| ++.+||+|+.||.|+|||+.++ +....+.+|.. .|.+++| ++.+|++|+.
T Consensus 131 ~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~ 194 (401)
T 4aez_A 131 TDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQ------------TKLRTMAGHQA-RVGCLSW--NRHVLSSGSR 194 (401)
T ss_dssp CCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEE--ETTEEEEEET
T ss_pred cCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCC------------eEEEEecCCCC-ceEEEEE--CCCEEEEEcC
Confidence 34899999999999 8889999999999999999887 56677888987 5899999 4579999999
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
||.|++||++... .....+.+|...|.+++|+|++ .+|++
T Consensus 195 dg~i~i~d~~~~~---------------------------------------~~~~~~~~~~~~v~~~~~~~~~-~~l~s 234 (401)
T 4aez_A 195 SGAIHHHDVRIAN---------------------------------------HQIGTLQGHSSEVCGLAWRSDG-LQLAS 234 (401)
T ss_dssp TSEEEEEETTSSS---------------------------------------CEEEEEECCSSCEEEEEECTTS-SEEEE
T ss_pred CCCEEEEecccCc---------------------------------------ceeeEEcCCCCCeeEEEEcCCC-CEEEE
Confidence 9999999997321 1236677899999999999988 78999
Q ss_pred EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEe--CCCcEEEEecCCCCCCCCCCceeeecCCCCc
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (479)
++.||.|++||++++. ....+..|...|.+++|+|.+..++++|+ .||.|++||+++ +.++..+. |...
T Consensus 235 ~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~------~~~~~~~~-~~~~ 305 (401)
T 4aez_A 235 GGNDNVVQIWDARSSI--PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT------GARVNTVD-AGSQ 305 (401)
T ss_dssp EETTSCEEEEETTCSS--EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT------CCEEEEEE-CSSC
T ss_pred EeCCCeEEEccCCCCC--ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC------CCEEEEEe-CCCc
Confidence 9999999999999877 67777789999999999995567888876 799999999998 67787776 6678
Q ss_pred EEEEEEecCCCcEEEE-EeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCcc
Q 011709 375 VLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLS 452 (479)
Q Consensus 375 v~~l~~~p~~~~llas-~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~ 452 (479)
|.+++|+|+++.++++ |+.||.|+|||+.... ....+...+|.. +.+++|+|++.+|++++.
T Consensus 306 v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-------------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~--- 369 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-------------LTKQVDIPAHDTRVLYSALSPDGRILSTAAS--- 369 (401)
T ss_dssp EEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-------------EEEEEEEECCSSCCCEEEECTTSSEEEEECT---
T ss_pred EEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-------------ceeEEEecCCCCCEEEEEECCCCCEEEEEeC---
Confidence 9999999999964433 4479999999998731 123445567766 999999999999999999
Q ss_pred ccceeEEEEeeccc
Q 011709 453 YANKKIKIYCHLEA 466 (479)
Q Consensus 453 ~~d~~i~i~~~~~~ 466 (479)
||.|++|+....
T Consensus 370 --dg~i~iw~~~~~ 381 (401)
T 4aez_A 370 --DENLKFWRVYDG 381 (401)
T ss_dssp --TSEEEEEECCC-
T ss_pred --CCcEEEEECCCC
Confidence 999999987543
No 48
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.2e-33 Score=283.43 Aligned_cols=239 Identities=26% Similarity=0.510 Sum_probs=208.6
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
...+|.+.|.+++|+| ++.+|++++.||+|++||.... ....+.+|.. .+.+++|+|++++|++|
T Consensus 298 ~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~-------------~~~~~~~~~~-~v~~~~~s~~g~~l~~~ 362 (577)
T 2ymu_A 298 TLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQ-------------HLQTLTGHSS-SVWGVAFSPDGQTIASA 362 (577)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSC-------------EEEEECCCSS-CEEEEEECTTSSEEEEE
T ss_pred EEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-------------eeEEEeCCCC-CEEEEEECCCCCEEEEE
Confidence 4458999999999999 8889999999999999997654 3456778886 58999999999999999
Q ss_pred cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEE
Q 011709 215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (479)
+.||.|++||.... .+..+.+|...|.+++|+|++ .+|
T Consensus 363 ~~dg~v~~~~~~~~-----------------------------------------~~~~~~~~~~~v~~~~~s~dg-~~l 400 (577)
T 2ymu_A 363 SDDKTVKLWNRNGQ-----------------------------------------LLQTLTGHSSSVRGVAFSPDG-QTI 400 (577)
T ss_dssp ETTSEEEEEETTCC-----------------------------------------EEEEEECCSSCEEEEEECTTS-SCE
T ss_pred eCCCEEEEEcCCCC-----------------------------------------EEEEecCCCCCeEEEEECCCC-CEE
Confidence 99999999996421 125677899999999999999 689
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCc
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (479)
++++.|+.|++||.. ++ .+..+.+|...|++++|+| ++.+|++++.|+.|++||.. ++.+..+.+|...
T Consensus 401 ~~~~~d~~v~~~~~~-~~--~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~-------~~~~~~~~~~~~~ 469 (577)
T 2ymu_A 401 ASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSS 469 (577)
T ss_dssp EEEETTSEEEEECTT-CC--EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT-------SCEEEEEECCSSC
T ss_pred EEEeCCCEEEEEeCC-CC--EEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECC-------CCEEEEEcCCCCC
Confidence 999999999999964 44 5777889999999999999 99999999999999999975 4788899999999
Q ss_pred EEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccc
Q 011709 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSY 453 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~ 453 (479)
|++++|+|+++ +||+++.|+.|+|||... +++....+|.. |++++|+|++++|++++.
T Consensus 470 v~~~~~spd~~-~las~~~d~~i~iw~~~~----------------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~---- 528 (577)
T 2ymu_A 470 VRGVAFSPDGQ-TIASASDDKTVKLWNRNG----------------QLLQTLTGHSSSVRGVAFSPDGQTIASASD---- 528 (577)
T ss_dssp EEEEEECTTSC-EEEEEETTSEEEEEETTS----------------CEEEEEECCSSCEEEEEECTTSSCEEEEET----
T ss_pred EEEEEEcCCCC-EEEEEeCCCEEEEEcCCC----------------CEEEEEeCCCCCEEEEEEcCCCCEEEEEEC----
Confidence 99999999999 578999999999999643 34455667876 999999999999999999
Q ss_pred cceeEEEEee
Q 011709 454 ANKKIKIYCH 463 (479)
Q Consensus 454 ~d~~i~i~~~ 463 (479)
|+.|++|+.
T Consensus 529 -dg~v~lwd~ 537 (577)
T 2ymu_A 529 -DKTVKLWNR 537 (577)
T ss_dssp -TSEEEEECT
T ss_pred -cCEEEEEeC
Confidence 999999984
No 49
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-34 Score=277.84 Aligned_cols=303 Identities=10% Similarity=0.108 Sum_probs=214.9
Q ss_pred cceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCcee
Q 011709 65 WPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVN 144 (479)
Q Consensus 65 wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 144 (479)
-|..++.|.|+- ..| .+++.+..+.||++....+ .......+|.+.|+
T Consensus 12 ~~v~~~~~s~~g--------~~l-----~~~~~d~~i~iw~~~~~~~-------------------~~~~~~~~h~~~v~ 59 (377)
T 3dwl_C 12 KPSYEHAFNSQR--------TEF-----VTTTATNQVELYEQDGNGW-------------------KHARTFSDHDKIVT 59 (377)
T ss_dssp SCCSCCEECSSS--------SEE-----ECCCSSSCBCEEEEETTEE-------------------EECCCBCCCSSCEE
T ss_pred CcEEEEEECCCC--------CEE-----EEecCCCEEEEEEccCCce-------------------EEEEEEecCCceEE
Confidence 367788888852 223 3455788899998752100 01223347999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEe
Q 011709 145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS 224 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd 224 (479)
+++|+| ++++||+|+.||+|+|||+.++. .......+.+|.. .|++++|+|++++|++|+.|+.|++||
T Consensus 60 ~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~---------~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd 128 (377)
T 3dwl_C 60 CVDWAP-KSNRIVTCSQDRNAYVYEKRPDG---------TWKQTLVLLRLNR-AATFVRWSPNEDKFAVGSGARVISVCY 128 (377)
T ss_dssp EEEECT-TTCCEEEEETTSSEEEC---------------CCCCEEECCCCSS-CEEEEECCTTSSCCEEEESSSCEEECC
T ss_pred EEEEeC-CCCEEEEEeCCCeEEEEEcCCCC---------ceeeeeEecccCC-ceEEEEECCCCCEEEEEecCCeEEEEE
Confidence 999999 78899999999999999999872 1235566778886 599999999999999999999999999
Q ss_pred cCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC-CCCceEEEEEeeCCCcEEEEEecCCeE
Q 011709 225 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVGDDSCL 303 (479)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i 303 (479)
+++... ......+.+ |...|.+++|+|++ .+|++++.||.|
T Consensus 129 ~~~~~~-------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i 170 (377)
T 3dwl_C 129 FEQEND-------------------------------------WWVSKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKA 170 (377)
T ss_dssp C------------------------------------------CCCCEEECSSCCSCEEEEEECTTS-SEEEEEESSSCE
T ss_pred ECCccc-------------------------------------ceeeeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEE
Confidence 975421 011245666 99999999999998 789999999999
Q ss_pred EEEeCCCCC----------------CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCc---
Q 011709 304 ILWDARVGT----------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP--- 364 (479)
Q Consensus 304 ~iwd~~~~~----------------~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--- 364 (479)
++||++... ..++..+ +|...|.+++|+| ++.+|++|+.||.|++||++. +..
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~------~~~~~~ 242 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSA------PEQPPR 242 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECS------TTSCEE
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCC------CCCcce
Confidence 999996322 1134444 8999999999999 999999999999999999998 555
Q ss_pred -eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC-CC---------------CCe------
Q 011709 365 -INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NY---------------PAG------ 421 (479)
Q Consensus 365 -~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~-~~---------------~~~------ 421 (479)
+..+.+|...|.+++|+|++. +|++++.|+ +.+|+....+.......... .. ...
T Consensus 243 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (377)
T 3dwl_C 243 ALITVKLSQLPLRSLLWANESA-IVAAGYNYS-PILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTAL 320 (377)
T ss_dssp ECCCEECSSSCEEEEEEEETTE-EEEEESSSS-EEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------
T ss_pred eeEeecCCCCceEEEEEcCCCC-EEEEEcCCc-EEEEEeCCCceEEEeeecccccccccccccccccccccccccccccc
Confidence 788899999999999999998 567877555 55777764331111110000 00 000
Q ss_pred -eEE--------------EeCCCCC-ceeEEEecCCC----eeeecCCCccccceeEEEEee
Q 011709 422 -LFF--------------QHAGHSP-SSSIKFVLRES----CLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 422 -l~~--------------~~~gh~~-~~~~~~sp~~~----~l~~~~~~~~~~d~~i~i~~~ 463 (479)
..| ...+|.. |+++++.+... .|+++|. ||.|++|+.
T Consensus 321 ~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~-----Dg~i~iWdl 377 (377)
T 3dwl_C 321 RSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGT-----DGRVVLWTL 377 (377)
T ss_dssp ----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEET-----TSEEEEECC
T ss_pred cccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecC-----CCcEEEecC
Confidence 011 1123766 89999876543 5999999 999999974
No 50
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.6e-34 Score=272.51 Aligned_cols=278 Identities=19% Similarity=0.295 Sum_probs=215.7
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|+- ..|. +++.+..++||+..... .......|.+.|.+
T Consensus 57 ~v~~~~~s~d~--------~~l~-----s~s~Dg~v~iWd~~~~~---------------------~~~~~~~~~~~v~~ 102 (340)
T 1got_B 57 KIYAMHWGTDS--------RLLL-----SASQDGKLIIWDSYTTN---------------------KVHAIPLRSSWVMT 102 (340)
T ss_dssp CEEEEEECTTS--------SEEE-----EEETTTEEEEEETTTCC---------------------EEEEEECSSSCEEE
T ss_pred ceEEEEECCCC--------CEEE-----EEeCCCcEEEEECCCCC---------------------cceEeecCCccEEE
Confidence 56677777741 2332 23467889999643110 13344578999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEec
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~ 225 (479)
++|+| ++.+||+|+.|+.|++||+.+... .......+.+|.+ .|.++.|++++. |++++.|++|++||+
T Consensus 103 ~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~--------~~~~~~~~~~h~~-~v~~~~~~~~~~-l~s~s~d~~i~~wd~ 171 (340)
T 1got_B 103 CAYAP-SGNYVACGGLDNICSIYNLKTREG--------NVRVSRELAGHTG-YLSCCRFLDDNQ-IVTSSGDTTCALWDI 171 (340)
T ss_dssp EEECT-TSSEEEEEETTCEEEEEETTTCSB--------SCEEEEEEECCSS-CEEEEEEEETTE-EEEEETTSCEEEEET
T ss_pred EEECC-CCCEEEEEeCCCeEEEEECccCCC--------cceeEEEecCCCc-cEEEEEECCCCc-EEEEECCCcEEEEEC
Confidence 99999 888999999999999999987521 1234567889987 589999998875 899999999999999
Q ss_pred CCCccccccCCc----ccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC
Q 011709 226 QDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (479)
Q Consensus 226 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (479)
.++......... ...........+. ....++.+.+|+......+..+.+|...|++++|+|++ .+|++++.||
T Consensus 172 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~--sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~ 248 (340)
T 1got_B 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFV--SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDA 248 (340)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred CCCcEEEEEcCCCCceEEEEECCCCCEEE--EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCC
Confidence 876543222111 0111111222211 22357788999999998889999999999999999998 7899999999
Q ss_pred eEEEEeCCCCCCCceeeec--cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEE
Q 011709 302 CLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379 (479)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~ 379 (479)
+|++||++++. .+..+. .+...|.+++|+| ++.+|++|+.||.|++||++. +..+..+.+|...|.+++
T Consensus 249 ~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~------~~~~~~~~~h~~~v~~~~ 319 (340)
T 1got_B 249 TCRLFDLRADQ--ELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALK------ADRAGVLAGHDNRVSCLG 319 (340)
T ss_dssp CEEEEETTTTE--EEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEE
T ss_pred cEEEEECCCCc--EEEEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEccc------CcEeeEeecCCCcEEEEE
Confidence 99999999876 344332 3345799999999 999999999999999999988 678899999999999999
Q ss_pred EecCCCcEEEEEeCCCCEEEEe
Q 011709 380 WSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 380 ~~p~~~~llas~s~Dg~v~iwd 401 (479)
|+|++.+ ||+|+.||.|+|||
T Consensus 320 ~s~dg~~-l~s~s~D~~i~iWd 340 (340)
T 1got_B 320 VTDDGMA-VATGSWDSFLKIWN 340 (340)
T ss_dssp ECTTSSC-EEEEETTSCEEEEC
T ss_pred EcCCCCE-EEEEcCCccEEecC
Confidence 9999995 78999999999997
No 51
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-34 Score=278.00 Aligned_cols=298 Identities=21% Similarity=0.298 Sum_probs=220.8
Q ss_pred hhhhhhccccccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceee
Q 011709 54 LYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKK 133 (479)
Q Consensus 54 ~y~~~~~~~l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (479)
+...+..|.- +..++.|.|+- ..|. +++.+..++||+.... ...
T Consensus 58 ~~~~l~gH~~--~V~~~~~sp~~--------~~l~-----s~s~D~~v~iWd~~~~---------------------~~~ 101 (380)
T 3iz6_a 58 CCRTLQGHSG--KVYSLDWTPEK--------NWIV-----SASQDGRLIVWNALTS---------------------QKT 101 (380)
T ss_dssp EEEEECCCSS--CEEEEEECTTS--------SCEE-----EEETTSEEEEEETTTT---------------------EEE
T ss_pred Eeeccccccc--EEEEEEEcCCC--------CEEE-----EEeCCCeEEEEECCCC---------------------ccc
Confidence 3334445543 67888888852 2232 3447889999974311 113
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC-CcEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVL 212 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~-~~l~ 212 (479)
.....|...|.+++|+| ++.+||+|+.|+.|+|||+.+..... ........+.+|.+ .|.++.|+|++ ..|+
T Consensus 102 ~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~-----~~~~~~~~~~gh~~-~v~~~~~~~~~~~~l~ 174 (380)
T 3iz6_a 102 HAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQADRD-----GNMPVSRVLTGHKG-YASSCQYVPDQETRLI 174 (380)
T ss_dssp EEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCCSSCC-----CSSTTCCBCCCCSS-CCCCCBCCSSSSSCEE
T ss_pred eEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCCcccc-----CCccceeeccCCCc-ceEEEEEecCCCCEEE
Confidence 44567999999999999 88999999999999999998653211 11234456789987 58999999974 5799
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceee--------cCCCCCCCCCCCCCCC-CCCCceeecCCCCceEE
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK--------QSPKPGDGNDKAADGP-SVGPRGIYNGHEDTVED 283 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~ 283 (479)
+|+.|++|++||+.++....................+. ......++.+.+|+.. ....+..+.+|...|++
T Consensus 175 s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~ 254 (380)
T 3iz6_a 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS 254 (380)
T ss_dssp EECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCE
T ss_pred EECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEE
Confidence 99999999999998875432221110000001111111 1112356788889886 45677889999999999
Q ss_pred EEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccC-------CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 011709 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-------DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (479)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~ 356 (479)
++|+|++ .+|++++.||+|++||++++. .+..+..+ ...|++++|+| ++.+|++|+.||.|++||+..
T Consensus 255 v~~~p~~-~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~- 329 (380)
T 3iz6_a 255 VKFFPDG-QRFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLL- 329 (380)
T ss_dssp EEECTTS-SEEEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTT-
T ss_pred EEEecCC-CeEEEEcCCCeEEEEECCCCc--EEEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCC-
Confidence 9999998 789999999999999999987 44444332 23489999999 999999999999999999987
Q ss_pred CCCCCCCceeee----cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 357 TSNGVGSPINKF----EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 357 ~~~~~~~~~~~~----~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
++.+..+ .+|.+.|++++|+|++.+ |++|+.||+|+||++...
T Consensus 330 -----~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 330 -----AEMVLNLGTLQNSHEGRISCLGLSSDGSA-LCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp -----CCEEEEECCSCSSCCCCCCEEEECSSSSE-EEEECTTSCEEEEECCSS
T ss_pred -----CceEEEEecccCCCCCceEEEEECCCCCE-EEEeeCCCCEEEEecCCC
Confidence 5666665 689999999999999994 789999999999999863
No 52
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=288.50 Aligned_cols=265 Identities=10% Similarity=0.044 Sum_probs=200.2
Q ss_pred eEEEecCCCceeEEEecCCC-C-------cEEEE-------------------EeCCCcEEEEECCCCCCccccCCCCCC
Q 011709 133 KHKTIIHPGEVNRIRELPQN-T-------KIVAT-------------------HTDSPDVLIWDVEAQPNRHAVLGATNS 185 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~-~-------~~lat-------------------~s~dg~i~iwd~~~~~~~~~~~~~~~~ 185 (479)
....+.+.+.|.+|+|+|.. + .+||+ ++.|++|+|||+.++....
T Consensus 126 ~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~-------- 197 (524)
T 2j04_B 126 RGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHC-------- 197 (524)
T ss_dssp CEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCE--------
T ss_pred ceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCc--------
Confidence 34456678999999999943 1 56666 4578899999998762110
Q ss_pred CCcEEEeccCCCceeeeeecCC------CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCC
Q 011709 186 RPDLILTGHQDNAEFALAMCPT------EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGN 259 (479)
Q Consensus 186 ~~~~~~~~h~~~~v~~l~~s~~------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (479)
.....+.+|.+ .|.+++|+|+ +.+||+|+.||+|++||+..+........
T Consensus 198 ~~~~~l~~~~~-~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~----------------------- 253 (524)
T 2j04_B 198 VKVQTIVHSFG-EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK----------------------- 253 (524)
T ss_dssp EEEEEEEECCC-SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE-----------------------
T ss_pred eEEEEEEecCC-cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce-----------------------
Confidence 11234566765 5999999997 57999999999999999975432100000
Q ss_pred CCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEE--EecCCCC-
Q 011709 260 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDD- 336 (479)
Q Consensus 260 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l--~~sp~~~- 336 (479)
....+...+.+|...|++++|++++ .|++|+.||+|++||++++.. ....+.+|...|++| +|+| ++
T Consensus 254 ------~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~-~~~~~~~H~~~V~sv~~~~s~-~g~ 323 (524)
T 2j04_B 254 ------MCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEV-PSFYDQVHDSYILSVSTAYSD-FED 323 (524)
T ss_dssp ------CCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSS-CSEEEECSSSCEEEEEEECCT-TSC
T ss_pred ------eecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCC-ceEEeecccccEEEEEEEcCC-CCC
Confidence 0012335678899999999999854 799999999999999998753 344567899999999 5777 76
Q ss_pred cEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC--cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCC
Q 011709 337 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 414 (479)
Q Consensus 337 ~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~ 414 (479)
.+||+|+.||+|+|||+++ ++++..+.+|.. .|.+++|+|++.. |++++.|++|++||++.+
T Consensus 324 ~~laS~S~D~tvklWD~~~------~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~--------- 387 (524)
T 2j04_B 324 TVVSTVAVDGYFYIFNPKD------IATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAA--------- 387 (524)
T ss_dssp CEEEEEETTSEEEEECGGG------HHHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCT---------
T ss_pred eEEEEeccCCeEEEEECCC------CCcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECccc---------
Confidence 8999999999999999998 667777777754 5889999999984 789999999999999874
Q ss_pred CCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 415 TTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 415 ~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
..+....||.. |.+++|+|++++|++++. ||.|++|+....
T Consensus 388 ------~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~-----Dgtv~lwd~~~~ 429 (524)
T 2j04_B 388 ------FAVHPLVSRETTITAIGVSRLHPMVLAGSA-----DGSLIITNAARR 429 (524)
T ss_dssp ------TCCEEEEECSSCEEEEECCSSCCBCEEEET-----TTEEECCBSCSS
T ss_pred ------ccceeeecCCCceEEEEeCCCCCeEEEEEC-----CCEEEEEechHh
Confidence 11223446776 999999999999999999 999999986543
No 53
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.6e-33 Score=268.61 Aligned_cols=304 Identities=14% Similarity=0.183 Sum_probs=228.2
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
|..++.|.|+- ..|+.+ ..++.+.+|+..... ........+|.+.|++
T Consensus 10 ~i~~~~~s~~~--------~~l~~~-----~~d~~v~i~~~~~~~-------------------~~~~~~~~~h~~~v~~ 57 (372)
T 1k8k_C 10 PISCHAWNKDR--------TQIAIC-----PNNHEVHIYEKSGNK-------------------WVQVHELKEHNGQVTG 57 (372)
T ss_dssp CCCEEEECTTS--------SEEEEE-----CSSSEEEEEEEETTE-------------------EEEEEEEECCSSCEEE
T ss_pred CeEEEEECCCC--------CEEEEE-----eCCCEEEEEeCCCCc-------------------EEeeeeecCCCCcccE
Confidence 66788888852 234332 357889999765210 0013444589999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEec
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~ 225 (479)
++|+| ++.+|++++.||.|++||+.++. ......+..|.. .|.+++|+|++++|++|+.||.|++||+
T Consensus 58 ~~~~~-~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~v~i~d~ 125 (372)
T 1k8k_C 58 VDWAP-DSNRIVTCGTDRNAYVWTLKGRT----------WKPTLVILRINR-AARCVRWAPNEKKFAVGSGSRVISICYF 125 (372)
T ss_dssp EEEET-TTTEEEEEETTSCEEEEEEETTE----------EEEEEECCCCSS-CEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred EEEeC-CCCEEEEEcCCCeEEEEECCCCe----------eeeeEEeecCCC-ceeEEEECCCCCEEEEEeCCCEEEEEEe
Confidence 99999 88899999999999999997762 112233456765 5899999999999999999999999999
Q ss_pred CCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEE
Q 011709 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 305 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 305 (479)
........ ......+|...|.+++|+|++ .+|++++.||.|++
T Consensus 126 ~~~~~~~~------------------------------------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~ 168 (372)
T 1k8k_C 126 EQENDWWV------------------------------------CKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRI 168 (372)
T ss_dssp ETTTTEEE------------------------------------EEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred cCCCccee------------------------------------eeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEE
Confidence 75431000 012335688999999999998 78999999999999
Q ss_pred EeCC------------------CCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceee
Q 011709 306 WDAR------------------VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (479)
Q Consensus 306 wd~~------------------~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~ 367 (479)
||++ .+. .+..+..|...|.+++|+| ++.+|++++.||.|++||++. ++++..
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~------~~~~~~ 239 (372)
T 1k8k_C 169 FSAYIKEVEERPAPTPWGSKMPFGE--LMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADK------KMAVAT 239 (372)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTC--EEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGG------TTEEEE
T ss_pred EEcccccccccccccccccccchhh--heEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCC------CceeEE
Confidence 9975 333 5677778999999999999 899999999999999999998 789999
Q ss_pred ecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC--CCcccc-CC--------------------CCCCCC---CCe
Q 011709 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK--VGKKVE-QG--------------------PRTTNY---PAG 421 (479)
Q Consensus 368 ~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~--~~~~~~-~~--------------------~~~~~~---~~~ 421 (479)
+..|..+|.+++|+|++. +|+++ .|+.|++||+.. +.-... .. +..... |..
T Consensus 240 ~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (372)
T 1k8k_C 240 LASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 317 (372)
T ss_dssp EECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred EccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccc
Confidence 999999999999999998 56566 899999999987 210000 00 000000 000
Q ss_pred eEEEeCCCCC-ceeEEEe-cCC---CeeeecCCCccccceeEEEEeeccc
Q 011709 422 LFFQHAGHSP-SSSIKFV-LRE---SCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 422 l~~~~~gh~~-~~~~~~s-p~~---~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
......+|.. |.+++|+ +++ .+|++++. ||.|++|+....
T Consensus 318 ~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~-----Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 318 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM-----DGGMSIWDVRSL 362 (372)
T ss_dssp -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET-----TSEEEEEEHHHH
T ss_pred cccccccccCCcceeEEecCCCcceeeEEEecC-----CCceEEEEecCh
Confidence 0112247776 8999977 555 89999999 999999987543
No 54
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.6e-33 Score=271.02 Aligned_cols=304 Identities=18% Similarity=0.291 Sum_probs=229.0
Q ss_pred ccccccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecC
Q 011709 60 NHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIH 139 (479)
Q Consensus 60 ~~~l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 139 (479)
-....|.+-.+.+.|.. ..++ .++..+..+.||++..... . ........+|
T Consensus 30 ~~~~~~~~~~~~~~~~~--------~~~~----~~~~~~g~i~v~~~~~~~~----------~-------~~~~~~~~~h 80 (402)
T 2aq5_A 30 VSQTTWDSGFCAVNPKF--------MALI----CEASGGGAFLVLPLGKTGR----------V-------DKNVPLVCGH 80 (402)
T ss_dssp BCCCCCSSCSEEECSSE--------EEEE----BCCSSSCCEEEEETTCCEE----------C-------CTTCCCBCCC
T ss_pred eecCccCCCcEEECCCe--------EEEE----EEEcCCCEEEEEECccCCC----------C-------CCCCceEecC
Confidence 34455666566666642 1222 3445677899887532100 0 0002234589
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC-CcEEEecCCC
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDK 218 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~-~~l~s~s~dg 218 (479)
.+.|++++|+|.++.+||+|+.||+|+|||+.++..... ...+...+.+|.. .|.+++|+|++ .+|++|+.||
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~-----~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~~~dg 154 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP-----LREPVITLEGHTK-RVGIVAWHPTAQNVLLSAGCDN 154 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC-----BCSCSEEEECCSS-CEEEEEECSSBTTEEEEEETTS
T ss_pred CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc-----cCCceEEecCCCC-eEEEEEECcCCCCEEEEEcCCC
Confidence 999999999997788999999999999999988632211 1246778899997 59999999998 6999999999
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee--cCCCCceEEEEEeeCCCcEEEE
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--NGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s 296 (479)
.|++||+.++.. +..+ .+|...|.+++|+|++ .+|++
T Consensus 155 ~i~iwd~~~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 193 (402)
T 2aq5_A 155 VILVWDVGTGAA----------------------------------------VLTLGPDVHPDTIYSVDWSRDG-ALICT 193 (402)
T ss_dssp CEEEEETTTTEE----------------------------------------EEEECTTTCCSCEEEEEECTTS-SCEEE
T ss_pred EEEEEECCCCCc----------------------------------------cEEEecCCCCCceEEEEECCCC-CEEEE
Confidence 999999975432 2445 6799999999999988 68999
Q ss_pred EecCCeEEEEeCCCCCCCceeee-ccCCCC-eEEEEecCCCCcEEEEE---eCCCcEEEEecCCCCCCCCCCceeeec-C
Q 011709 297 VGDDSCLILWDARVGTSPVIKVE-KAHDAD-LHCVDWNPLDDNLILTG---SADNSVRMFDRRNLTSNGVGSPINKFE-G 370 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~-v~~l~~sp~~~~~l~tg---s~dg~I~iwd~~~~~~~~~~~~~~~~~-~ 370 (479)
++.||.|++||+++++ .+..+ ..|... +.+++|+| ++.+|++| +.|+.|++||++... .++.... .
T Consensus 194 ~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~-----~~~~~~~~~ 265 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKGT--VVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLE-----EPLSLQELD 265 (402)
T ss_dssp EETTSEEEEEETTTTE--EEEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCS-----SCSEEEECC
T ss_pred EecCCcEEEEeCCCCc--eeeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCcccc-----CCceEEecc
Confidence 9999999999999987 56665 677766 89999999 89999999 799999999999832 2233332 5
Q ss_pred CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCC
Q 011709 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~ 450 (479)
|...|.+++|+|++..++++++.||.|++||+..... ....+..+.....+.+++|+|++.+++++
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~-----------~~~~l~~~~~~~~v~~~~~sp~~~~~~s~--- 331 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP-----------FLHYLSMFSSKESQRGMGYMPKRGLEVNK--- 331 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT-----------CEEEEEEECCSSCCSEEEECCGGGSCGGG---
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc-----------ceEeecccccCCcccceEEecccccceec---
Confidence 7788999999999997666777899999999987411 02334455544569999999999998753
Q ss_pred ccccceeEEEEeecc
Q 011709 451 LSYANKKIKIYCHLE 465 (479)
Q Consensus 451 ~~~~d~~i~i~~~~~ 465 (479)
++.+++|+...
T Consensus 332 ----~~~~~~~~l~~ 342 (402)
T 2aq5_A 332 ----CEIARFYKLHE 342 (402)
T ss_dssp ----TEEEEEEEEET
T ss_pred ----ceeEEEEEcCC
Confidence 55899997654
No 55
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=263.67 Aligned_cols=280 Identities=17% Similarity=0.218 Sum_probs=218.1
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.....+|.+.|++++| | ++.+||+|+.||.|++||+.+. .....+..|.. .|.+++|+|++++|+
T Consensus 11 ~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~ 75 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQ------------WLGTVVYTGQG-FLNSVCYDSEKELLL 75 (313)
T ss_dssp EEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSS------------EEEEEEEECSS-CEEEEEEETTTTEEE
T ss_pred HHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCC------------EEEEEeecCCc-cEEEEEECCCCCEEE
Confidence 4455689999999999 7 7789999999999999999776 55667788876 599999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeec-----CCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ-----SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
+|+.||.|++|++........... ..........+.. .....++.+.+|+ .......+..|...+.++.|+
T Consensus 76 ~~~~dg~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~ 151 (313)
T 3odt_A 76 FGGKDTMINGVPLFATSGEDPLYT--LIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVV 151 (313)
T ss_dssp EEETTSCEEEEETTCCTTSCC-CE--ECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEE
T ss_pred EecCCCeEEEEEeeecCCCCcccc--hhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEc
Confidence 999999999999976532111100 0000001111111 1122456667777 555667788899999999999
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCCceeeecc-CCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
|.....+++++.||.|++||.. . ....+.. |...+.+++|+| ++. +++|+.||.|++||++. ++++.
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d~~--~--~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~------~~~~~ 219 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQND--K--VIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHT------GDVLR 219 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETT--E--EEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTT------CCEEE
T ss_pred cCCCCEEEEEECCCCEEEEecC--c--eEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCc------hhhhh
Confidence 9444789999999999999943 2 3444555 999999999999 777 99999999999999998 78999
Q ss_pred eecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC-CceeEEEecCCCeee
Q 011709 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS-PSSSIKFVLRESCLV 445 (479)
Q Consensus 367 ~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~-~~~~~~~sp~~~~l~ 445 (479)
.+.+|...|++++|+|++. |++++.||.|++||++.+ .+.....+|. .+.+++|+|++. ++
T Consensus 220 ~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~-~~ 281 (313)
T 3odt_A 220 TYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENG---------------SLKQVITLPAISIWSVDCMSNGD-II 281 (313)
T ss_dssp EEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTC---------------CEEEEEECSSSCEEEEEECTTSC-EE
T ss_pred hhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCC---------------ceeEEEeccCceEEEEEEccCCC-EE
Confidence 9999999999999999994 569999999999999874 2344455566 489999999998 55
Q ss_pred ecCCCccccceeEEEEeeccc
Q 011709 446 DNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 446 ~~~~~~~~~d~~i~i~~~~~~ 466 (479)
+++. ||.|++|+....
T Consensus 282 ~~~~-----dg~i~iw~~~~~ 297 (313)
T 3odt_A 282 VGSS-----DNLVRIFSQEKS 297 (313)
T ss_dssp EEET-----TSCEEEEESCGG
T ss_pred EEeC-----CCcEEEEeCCCC
Confidence 6777 899999986643
No 56
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.2e-33 Score=266.31 Aligned_cols=281 Identities=19% Similarity=0.255 Sum_probs=219.2
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|+- .+|. +++.+..++||+.... ........|...|.+
T Consensus 66 ~V~~~~~s~d~--------~~l~-----s~s~Dg~v~vWd~~~~---------------------~~~~~~~~~~~~v~~ 111 (354)
T 2pbi_B 66 KVLCMDWCKDK--------RRIV-----SSSQDGKVIVWDSFTT---------------------NKEHAVTMPCTWVMA 111 (354)
T ss_dssp CEEEEEECTTS--------SEEE-----EEETTSEEEEEETTTC---------------------CEEEEEECSSSCCCE
T ss_pred eEEEEEECCCC--------CEEE-----EEeCCCeEEEEECCCC---------------------CcceEEecCCCCEEE
Confidence 67788888852 2343 3447889999974211 013344568889999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEec
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~ 225 (479)
++|+| ++.+||+|+.|+.+++|++....... .......+.+|.. .|.+++|+|++..|++|+.||+|++||+
T Consensus 112 ~~~sp-~g~~lasg~~d~~i~v~~~~~~~~~~------~~~~~~~~~~h~~-~v~~~~~~~~~~~l~t~s~D~~v~lwd~ 183 (354)
T 2pbi_B 112 CAYAP-SGCAIACGGLDNKCSVYPLTFDKNEN------MAAKKKSVAMHTN-YLSACSFTNSDMQILTASGDGTCALWDV 183 (354)
T ss_dssp EEECT-TSSEEEEESTTSEEEEEECCCCTTCC------SGGGCEEEEECSS-CEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred EEECC-CCCEEEEeeCCCCEEEEEEecccccc------ccccceeeeccCC-cEEEEEEeCCCCEEEEEeCCCcEEEEeC
Confidence 99999 88999999999999999997652211 1234567788987 5899999999999999999999999999
Q ss_pred CCCccccccCCcc----cc--cCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec
Q 011709 226 QDHITSSATDPAT----AK--SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 226 ~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
+++.......... .. .+......+. ....++.+.+|+.....++..+.+|...|++++|+|++ .+|++++.
T Consensus 184 ~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~--sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~ 260 (354)
T 2pbi_B 184 ESGQLLQSFHGHGADVLCLDLAPSETGNTFV--SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG-DAFASGSD 260 (354)
T ss_dssp TTCCEEEEEECCSSCEEEEEECCCSSCCEEE--EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEET
T ss_pred CCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE--EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC-CEEEEEeC
Confidence 8875432221110 00 0111112222 12356788999999999999999999999999999998 78999999
Q ss_pred CCeEEEEeCCCCCCCceeeec--cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEE
Q 011709 300 DSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 377 (479)
|++|++||++... .+..+. .+...+.+++|+| ++.+|++|+.|+.|++||++. +..+..+.+|...|++
T Consensus 261 D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~vwd~~~------~~~~~~l~~h~~~v~~ 331 (354)
T 2pbi_B 261 DATCRLYDLRADR--EVAIYSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLK------GSRVSILFGHENRVST 331 (354)
T ss_dssp TSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CSEEEEECCCSSCEEE
T ss_pred CCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeC-CCCEEEEEECCCcEEEEECCC------CceEEEEECCCCcEEE
Confidence 9999999999876 333333 3345789999999 999999999999999999988 7888999999999999
Q ss_pred EEEecCCCcEEEEEeCCCCEEEEe
Q 011709 378 VQWSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 378 l~~~p~~~~llas~s~Dg~v~iwd 401 (479)
++|+|++.+ ||+|+.||+|+||+
T Consensus 332 l~~spdg~~-l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 332 LRVSPDGTA-FCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSC-EEEEETTSEEEEEC
T ss_pred EEECCCCCE-EEEEcCCCCEEecC
Confidence 999999996 78999999999996
No 57
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.2e-32 Score=268.87 Aligned_cols=251 Identities=18% Similarity=0.357 Sum_probs=210.6
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
..+.-+|.+.|++|+|+| ++.+||+|+.||+|+|||+.++ +.+..+.+|.. .+.+++|+ +..|+
T Consensus 140 ~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~------------~~~~~~~~h~~-~v~~~s~~--~~~l~ 203 (420)
T 4gga_A 140 LLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQ------------KRLRNMTSHSA-RVGSLSWN--SYILS 203 (420)
T ss_dssp EEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEEE--TTEEE
T ss_pred EEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCC------------cEEEEEeCCCC-ceEEEeeC--CCEEE
Confidence 344457888999999999 8899999999999999999987 66778899987 47787775 67899
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+|+.|+.+++||...... .+..+.+|...+..+.|+|++ .
T Consensus 204 sgs~d~~i~~~d~~~~~~---------------------------------------~~~~~~~h~~~~~~~~~~~~g-~ 243 (420)
T 4gga_A 204 SGSRSGHIHHHDVRVAEH---------------------------------------HVATLSGHSQEVCGLRWAPDG-R 243 (420)
T ss_dssp EEETTSEEEEEETTSSSC---------------------------------------EEEEEECCSSCEEEEEECTTS-S
T ss_pred EEeCCCceeEeeecccce---------------------------------------eeEEecccccceeeeeecCCC-C
Confidence 999999999999864322 235678899999999999999 7
Q ss_pred EEEEEecCCeEEEEeCCCCCC--CceeeeccCCCCeEEEEecCCCCcEEEEE--eCCCcEEEEecCCCCCCCCCCceeee
Q 011709 293 EFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTG--SADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~l~tg--s~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
++++++.|+.|++||.++++. ..+.....|...|.+++|+|.+..+++++ +.|++|++||+++ +.++..+
T Consensus 244 ~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t------~~~~~~~ 317 (420)
T 4gga_A 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS------GACLSAV 317 (420)
T ss_dssp EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT------TEEEEEE
T ss_pred eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc------cccceee
Confidence 899999999999999988652 23455668999999999999777887765 4799999999998 7778777
Q ss_pred cCCCCcEEEEEEecCCCcEEEEE-eCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeee
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSS-AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVD 446 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~-s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~ 446 (479)
..| ..+.++.|+|++..+++++ +.|+.|+|||+.++ +.+....||.. |.+++|+|++.+|++
T Consensus 318 ~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---------------~~v~~l~gH~~~V~~l~~spdg~~l~S 381 (420)
T 4gga_A 318 DAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---------------AKVAELKGHTSRVLSLTMSPDGATVAS 381 (420)
T ss_dssp ECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred ccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 755 5788999999999765443 36999999999874 45667789987 999999999999999
Q ss_pred cCCCccccceeEEEEeeccc
Q 011709 447 NNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 447 ~~~~~~~~d~~i~i~~~~~~ 466 (479)
++. |++|++|++.+.
T Consensus 382 ~s~-----D~tvriWdv~~~ 396 (420)
T 4gga_A 382 AAA-----DETLRLWRCFEL 396 (420)
T ss_dssp EET-----TTEEEEECCSCS
T ss_pred Eec-----CCeEEEEECCCC
Confidence 999 999999987653
No 58
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-33 Score=272.69 Aligned_cols=286 Identities=16% Similarity=0.201 Sum_probs=211.8
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEe--ccCCCceeeeeecC-CCC
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCP-TEP 209 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~l~~s~-~~~ 209 (479)
.....+|.+.|++++|+|++..+||+|+.||.|+|||+.+. .....+. +|.. .|.+++|+| ++.
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~h~~-~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ------------NKTSFIQGMGPGD-AITGMKFNQFNTN 132 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST------------TCEEEECCCSTTC-BEEEEEEETTEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc------------ccceeeecCCcCC-ceeEEEeCCCCCC
Confidence 34556899999999999944489999999999999999977 3333443 6876 699999999 678
Q ss_pred cEEEecCCCcEEEEecCCCccccccCC------cccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEE
Q 011709 210 YVLSGGKDKSVVLWSIQDHITSSATDP------ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (479)
Q Consensus 210 ~l~s~s~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (479)
+|++++.||.|++||+.+......... ............+.. ...++.+.+|+. ...++..+.+|...|.+
T Consensus 133 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLAT--GDSTGRLLLLGL-DGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEE--EETTSEEEEEET-TSCEEEEEECSSSCEEE
T ss_pred EEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEE--ECCCCCEEEEEC-CCCEEEEeccCCCcEEE
Confidence 999999999999999985322111100 000111111122221 234567777887 46677888999999999
Q ss_pred EEEeeCCCcEEEEEecCCeEEEEeCCCCC--CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCC
Q 011709 284 VTFCPSSAQEFCSVGDDSCLILWDARVGT--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (479)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~ 361 (479)
++|+|++..+|++++.|+.|++||+++.. ..++..+ +|...|.+++|+|.++.+|++++.||.|++||+++
T Consensus 210 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~------ 282 (383)
T 3ei3_B 210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD------ 282 (383)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB------
T ss_pred EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC------
Confidence 99999995589999999999999999843 1144444 79999999999997789999999999999999998
Q ss_pred CCceeeecCCC-----------------CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEE
Q 011709 362 GSPINKFEGHS-----------------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (479)
Q Consensus 362 ~~~~~~~~~h~-----------------~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 424 (479)
+..+..+.+|. +.+..++|+|++.. +++.||.|+|||+.++ .++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~---------------~~~~ 344 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSG---------------GLVH 344 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTC---------------CEEE
T ss_pred CccccccccccccccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCC---------------ceee
Confidence 44555554432 33444666666653 6778999999999874 2334
Q ss_pred EeCC--CCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 425 QHAG--HSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 425 ~~~g--h~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
...+ |.. +..++|+|++.+|+++ . |+.|++|+..+
T Consensus 345 ~l~~~~~~~~~~~~~~s~~g~~l~s~-s-----d~~i~iw~~~~ 382 (383)
T 3ei3_B 345 QLRDPNAAGIISLNKFSPTGDVLASG-M-----GFNILIWNRED 382 (383)
T ss_dssp EECBTTBCSCCCEEEECTTSSEEEEE-E-----TTEEEEEECC-
T ss_pred eecCCCCCceEEEEEEecCccEEEEe-c-----CCcEEEEecCC
Confidence 4444 445 5666999999999888 4 68999998753
No 59
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-35 Score=280.01 Aligned_cols=256 Identities=12% Similarity=0.144 Sum_probs=197.6
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
.|.++|++++|+| ++++||+|+.||.|+|||+.++. ......+.+|.. .|++++|+|++++|++|+.|
T Consensus 9 ~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~----------~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 9 ILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNG----------WKHARTFSDHDK-IVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp ECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTE----------EEECCCBCCCSS-CEEEEEECTTTCCEEEEETT
T ss_pred cCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCc----------eEEEEEEecCCc-eEEEEEEeCCCCEEEEEeCC
Confidence 4677999999999 88899999999999999998651 123445678887 59999999999999999999
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
|+|++||+.++.. ..+...+.+|...|.+++|+|++ .+|+++
T Consensus 77 ~~v~vwd~~~~~~-------------------------------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 118 (377)
T 3dwl_C 77 RNAYVYEKRPDGT-------------------------------------WKQTLVLLRLNRAATFVRWSPNE-DKFAVG 118 (377)
T ss_dssp SSEEEC------C-------------------------------------CCCEEECCCCSSCEEEEECCTTS-SCCEEE
T ss_pred CeEEEEEcCCCCc-------------------------------------eeeeeEecccCCceEEEEECCCC-CEEEEE
Confidence 9999999976430 11235567799999999999998 689999
Q ss_pred ecCCeEEEEeCCCCCC-Cceeeecc-CCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCC------------CCCC
Q 011709 298 GDDSCLILWDARVGTS-PVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------------GVGS 363 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~-~~~~~~~~-~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~------------~~~~ 363 (479)
+.|+.|++||++++.. .+...+.. |...|.+++|+| ++.+|++|+.||.|++||++..... ..+.
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 197 (377)
T 3dwl_C 119 SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNT 197 (377)
T ss_dssp ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEE
T ss_pred ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhh
Confidence 9999999999998762 13455556 999999999999 9999999999999999999632110 0134
Q ss_pred ceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCC
Q 011709 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRES 442 (479)
Q Consensus 364 ~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~ 442 (479)
++..+ +|...|++++|+|++++ |++++.||.|+|||++.... ++.++....+|.. +.+++|+|++.
T Consensus 198 ~~~~~-~~~~~v~~~~~sp~~~~-l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~~~ 264 (377)
T 3dwl_C 198 VCAEY-PSGGWVHAVGFSPSGNA-LAYAGHDSSVTIAYPSAPEQ-----------PPRALITVKLSQLPLRSLLWANESA 264 (377)
T ss_dssp EEECC-CCSSSEEEEEECTTSSC-EEEEETTTEEC-CEECSTTS-----------CEEECCCEECSSSCEEEEEEEETTE
T ss_pred hhhcc-cCCceEEEEEECCCCCE-EEEEeCCCcEEEEECCCCCC-----------cceeeEeecCCCCceEEEEEcCCCC
Confidence 56666 89999999999999995 77999999999999988421 1222344556765 89999999999
Q ss_pred eeeecCCCccccceeEEEEee
Q 011709 443 CLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 443 ~l~~~~~~~~~~d~~i~i~~~ 463 (479)
+|+++++ ++.+ +|..
T Consensus 265 ~l~~~~~-----~~~~-~~~~ 279 (377)
T 3dwl_C 265 IVAAGYN-----YSPI-LLQG 279 (377)
T ss_dssp EEEEESS-----SSEE-EECC
T ss_pred EEEEEcC-----CcEE-EEEe
Confidence 9999877 6666 5543
No 60
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.3e-33 Score=269.01 Aligned_cols=254 Identities=14% Similarity=0.186 Sum_probs=209.8
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
.|.++|++++|+| ++++||+|+.||.|+|||+.++. ......+.+|.. .|.+++|+|++++|++++.|
T Consensus 6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~----------~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNK----------WVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTE----------EEEEEEEECCSS-CEEEEEEETTTTEEEEEETT
T ss_pred ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCc----------EEeeeeecCCCC-cccEEEEeCCCCEEEEEcCC
Confidence 4899999999999 88899999999999999998761 126677889987 59999999999999999999
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
|.|++||+.+.... ....+..|...|.+++|+|++ .+|+++
T Consensus 74 g~i~vwd~~~~~~~--------------------------------------~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 114 (372)
T 1k8k_C 74 RNAYVWTLKGRTWK--------------------------------------PTLVILRINRAARCVRWAPNE-KKFAVG 114 (372)
T ss_dssp SCEEEEEEETTEEE--------------------------------------EEEECCCCSSCEEEEEECTTS-SEEEEE
T ss_pred CeEEEEECCCCeee--------------------------------------eeEEeecCCCceeEEEECCCC-CEEEEE
Confidence 99999999654311 113345688899999999998 789999
Q ss_pred ecCCeEEEEeCCCCCCC--ceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCC------------CCCCC
Q 011709 298 GDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS------------NGVGS 363 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~------------~~~~~ 363 (479)
+.||.|++||++..... .......|...|.+++|+| ++.+|++|+.||.|++||++.... ...+.
T Consensus 115 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
T 1k8k_C 115 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 193 (372)
T ss_dssp ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh
Confidence 99999999999987621 2233357899999999999 999999999999999999752110 01157
Q ss_pred ceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC-CceeEEEecCCC
Q 011709 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS-PSSSIKFVLRES 442 (479)
Q Consensus 364 ~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~-~~~~~~~sp~~~ 442 (479)
++..+.+|...|.+++|+|++. +|++++.||.|++||++.. ..+....+|. .+.+++|+|++.
T Consensus 194 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~ 257 (372)
T 1k8k_C 194 LMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKK---------------MAVATLASETLPLLAVTFITESS 257 (372)
T ss_dssp EEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGT---------------TEEEEEECSSCCEEEEEEEETTE
T ss_pred heEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEECCCC---------------ceeEEEccCCCCeEEEEEecCCC
Confidence 7888889999999999999998 5789999999999999874 2344455666 489999999999
Q ss_pred eeeecCCCccccceeEEEEeecc
Q 011709 443 CLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 443 ~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
+++++ . |+.|++|+...
T Consensus 258 ~l~~~-~-----d~~i~i~~~~~ 274 (372)
T 1k8k_C 258 LVAAG-H-----DCFPVLFTYDS 274 (372)
T ss_dssp EEEEE-T-----TSSCEEEEEET
T ss_pred EEEEE-e-----CCeEEEEEccC
Confidence 88887 5 78999998866
No 61
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=276.96 Aligned_cols=285 Identities=14% Similarity=0.219 Sum_probs=201.9
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccC------------CCceeeeee
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------------DNAEFALAM 204 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~~v~~l~~ 204 (479)
+.|.+.|++++|+| ++.+||+|+.||.|+|||+.+...... ...........+.+|. . .|++++|
T Consensus 25 ~~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~V~~l~~ 101 (447)
T 3dw8_B 25 VAEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQS-HSRGEYNVYSTFQSHEPEFDYLKSLEIEE-KINKIRW 101 (447)
T ss_dssp CCGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----C-CCCCCEEEEEEEECCCCEEEGGGTEEECC-CCCEEEE
T ss_pred ccccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCc-ccccceeEecccccccccccccccccccC-ceEEEEE
Confidence 46789999999999 889999999999999999987632110 0001123466788997 5 5899999
Q ss_pred cCCC--CcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCC---------CCcee
Q 011709 205 CPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV---------GPRGI 273 (479)
Q Consensus 205 s~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 273 (479)
+|++ .+|++++.||+|++||+.+.......... ....+.... ...+.....+.. .+...
T Consensus 102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~----~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNL----KEEDGRYRD------PTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSC----C--------------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred cCCCCcceEEEeCCCCeEEEEecccccCCcceecc----cCccccccC------cccccceEeccccchheeeeccceEE
Confidence 9998 78999999999999999764321100000 000000000 000000000000 01112
Q ss_pred -ecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCcee-------eeccCCCCeEEEEecCCCC-cEEEEEeC
Q 011709 274 -YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK-------VEKAHDADLHCVDWNPLDD-NLILTGSA 344 (479)
Q Consensus 274 -~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~l~~sp~~~-~~l~tgs~ 344 (479)
..+|...|.+++|+|++ .+|++| .||.|++||+++... ... .+.+|...|++++|+| ++ .+|++|+.
T Consensus 172 ~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~ 247 (447)
T 3dw8_B 172 FANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSS 247 (447)
T ss_dssp ECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEET
T ss_pred eccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCc-eeeeeecccccccccCcceEEEEECC-CCCcEEEEEeC
Confidence 36799999999999998 688888 799999999995432 222 3568999999999999 76 99999999
Q ss_pred CCcEEEEecCCCCCCCCCCc----eeeecCCCC------------cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCcc
Q 011709 345 DNSVRMFDRRNLTSNGVGSP----INKFEGHSA------------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 408 (479)
Q Consensus 345 dg~I~iwd~~~~~~~~~~~~----~~~~~~h~~------------~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~ 408 (479)
||.|++||++. +.. +..+.+|.. .|.+++|+|++++ |++++. +.|+|||++..+..
T Consensus 248 dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~iwd~~~~~~~ 319 (447)
T 3dw8_B 248 KGTIRLCDMRA------SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKVWDLNMENRP 319 (447)
T ss_dssp TSCEEEEETTT------CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEEEETTCCSSC
T ss_pred CCeEEEEECcC------CccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEEEeCCCCccc
Confidence 99999999998 444 677888876 8999999999995 678887 99999999873322
Q ss_pred ccCCCCCCCCCCeeEEEeCCCCC----------------ceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 409 VEQGPRTTNYPAGLFFQHAGHSP----------------SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 409 ~~~~~~~~~~~~~l~~~~~gh~~----------------~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
. ....+|.. +.+++|+|++.+|++++. ||.|++|+...
T Consensus 320 ~--------------~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~-----dg~v~iwd~~~ 373 (447)
T 3dw8_B 320 V--------------ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY-----NNFFRMFDRNT 373 (447)
T ss_dssp S--------------CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS-----TTEEEEEETTT
T ss_pred c--------------ceeeccccccccccccccccccccceEEEECCCCCEEEEecc-----CCEEEEEEcCC
Confidence 2 12334443 234999999999999999 99999998654
No 62
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=275.26 Aligned_cols=287 Identities=16% Similarity=0.261 Sum_probs=218.1
Q ss_pred CCCceeEEEecCCCCcEEEEE----------eCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC
Q 011709 139 HPGEVNRIRELPQNTKIVATH----------TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 208 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~ 208 (479)
+...|.+++|+|+...+||+| +.||.|+|||+.++... ++...+ .|.. .|++++|+|++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~---------~~~~~~-~~~~-~v~~~~~s~~~ 79 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE---------KPIASL-QVDS-KFNDLDWSHNN 79 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC---------SCSCCC-CCSS-CEEEEEECSSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC---------cEEEEE-ecCC-ceEEEEECCCC
Confidence 445789999999545599999 89999999999876311 122222 4554 58999999999
Q ss_pred CcEEEecCCCcEEEEecCCCc----cccccCC----cccccCCCC-CceeecCCCCCCCCCCCCCCCCCC------Cc--
Q 011709 209 PYVLSGGKDKSVVLWSIQDHI----TSSATDP----ATAKSAGSS-GSIIKQSPKPGDGNDKAADGPSVG------PR-- 271 (479)
Q Consensus 209 ~~l~s~s~dg~i~vwd~~~~~----~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~-- 271 (479)
++|++|+.||.|++||+.... ....... ......... ...+.. ...++.+.+|+..... ..
T Consensus 80 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s--~~~dg~v~iwd~~~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 80 KIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS--GGNNGEIFIWDMNKCTESPSNYTPLT 157 (416)
T ss_dssp SCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEE--ECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred CeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEE--EcCCCeEEEEECCCCccccccccccc
Confidence 999999999999999998721 1111110 001111111 112221 1246778888887765 22
Q ss_pred -eeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccC------CCCeEEEEecCCCCcEEEEEeC
Q 011709 272 -GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH------DADLHCVDWNPLDDNLILTGSA 344 (479)
Q Consensus 272 -~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~l~~sp~~~~~l~tgs~ 344 (479)
..+.+|...|.+++|+|++..+|++++.||.|++||+++++ .+..+..+ ...|.+++|+|.+..+|++++.
T Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (416)
T 2pm9_A 158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235 (416)
T ss_dssp CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence 23467999999999999965899999999999999999887 55555555 7899999999933479999999
Q ss_pred CC---cEEEEecCCCCCCCCCCceeeec-CCCCcEEEEEEec-CCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCC
Q 011709 345 DN---SVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP 419 (479)
Q Consensus 345 dg---~I~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p-~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 419 (479)
|+ .|++||++.. ..++..+. +|...|++++|+| ++. +|++++.||.|++||++..
T Consensus 236 d~~~~~i~~~d~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~~-------------- 295 (416)
T 2pm9_A 236 SDNDPSILIWDLRNA-----NTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPESA-------------- 295 (416)
T ss_dssp CSSSCCCCEEETTST-----TSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSSC--------------
T ss_pred CCCCceEEEEeCCCC-----CCCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCCC--------------
Confidence 99 9999999973 15677788 8999999999999 666 5789999999999999874
Q ss_pred CeeEEEeCCCCC-ceeEEEecCC-CeeeecCCCccccceeEEEEeeccc
Q 011709 420 AGLFFQHAGHSP-SSSIKFVLRE-SCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 420 ~~l~~~~~gh~~-~~~~~~sp~~-~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
+.+....+|.. +.+++|+|++ .+|++++. |+.|++|+....
T Consensus 296 -~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-----d~~i~iw~~~~~ 338 (416)
T 2pm9_A 296 -EQLSQFPARGNWCFKTKFAPEAPDLFACASF-----DNKIEVQTLQNL 338 (416)
T ss_dssp -CEEEEEECSSSCCCCEEECTTCTTEEEECCS-----SSEEEEEESCCC
T ss_pred -ccceeecCCCCceEEEEECCCCCCEEEEEec-----CCcEEEEEccCC
Confidence 33455567766 8999999999 79999998 999999987654
No 63
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.7e-32 Score=261.90 Aligned_cols=277 Identities=16% Similarity=0.226 Sum_probs=209.2
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEE-----EeccCCCceeeeeecC-CC
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-----LTGHQDNAEFALAMCP-TE 208 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~~v~~l~~s~-~~ 208 (479)
...+|.+.|++++|+|.++.+||+|+.||.|+|||+.+......... ..... ..+|.. .|.+++|+| ++
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 112 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTC----KAVCSIGRDHPDVHRY-SVETVQWYPHDT 112 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEE----CEEEEECTTCTTCCSS-CEEEEEECTTCT
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEec----cccccccccccccCCC-cEEEEEEccCCC
Confidence 34569999999999997788999999999999999998743221000 00000 024776 599999999 67
Q ss_pred CcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee
Q 011709 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 209 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (479)
.+|++++.||.|++||+.++... ..+ .+...+.++.|++
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~----------------------------------------~~~-~~~~~~~~~~~~~ 151 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTA----------------------------------------DVF-NFEETVYSHHMSP 151 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEE----------------------------------------EEE-ECSSCEEEEEECS
T ss_pred cEEEEEeCCCeEEEeeCCCCccc----------------------------------------eec-cCCCceeeeEeec
Confidence 79999999999999999754321 222 2667899999998
Q ss_pred CCC--cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCc-EEEEEeCCCcEEEEecCCCCCC------
Q 011709 289 SSA--QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSN------ 359 (479)
Q Consensus 289 ~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-~l~tgs~dg~I~iwd~~~~~~~------ 359 (479)
.+. .++++++.||.|++||++++. .+..+..|...|.+++|+| ++. +|++|+.||.|++||++.....
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~ 228 (408)
T 4a11_B 152 VSTKHCLVAVGTRGPKVQLCDLKSGS--CSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQ 228 (408)
T ss_dssp SCSSCCEEEEEESSSSEEEEESSSSC--CCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCT
T ss_pred CCCCCcEEEEEcCCCeEEEEeCCCcc--eeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccc
Confidence 642 389999999999999999887 6777888999999999999 666 7999999999999999874210
Q ss_pred ----CCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC-------------------
Q 011709 360 ----GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT------------------- 416 (479)
Q Consensus 360 ----~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~------------------- 416 (479)
........+.+|...|.+++|+|++.+ |++++.||.|++||+..+...........
T Consensus 229 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLH-LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF 307 (408)
T ss_dssp TTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred cccccceeeccccccccCceeEEEEcCCCCE-EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence 001112223678999999999999985 77999999999999998533221110000
Q ss_pred -------------CCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 417 -------------NYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 417 -------------~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
-.....+....+|.. +.+++|+|++.+|++++. ||.|++|+....
T Consensus 308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----dg~i~iw~~~~~ 366 (408)
T 4a11_B 308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR-----DCNILAWVPSLY 366 (408)
T ss_dssp EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEET-----TSCEEEEEECC-
T ss_pred EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECC-----CCeEEEEeCCCC
Confidence 011244556677876 899999999999999999 999999987654
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.1e-33 Score=271.98 Aligned_cols=241 Identities=14% Similarity=0.226 Sum_probs=192.7
Q ss_pred ceeEE-EecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 142 EVNRI-RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 142 ~V~~l-~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
.+.++ .|+| ++++||+|+.||.|+|||+.++ .....+.+|.. .|++++|+|++++|++|+.||.|
T Consensus 98 ~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~d~~i 163 (420)
T 3vl1_A 98 DYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFN------------LQREIDQAHVS-EITKLKFFPSGEALISSSQDMQL 163 (420)
T ss_dssp CEEEEEEECS-SSCEEEEEETTSCEEEECTTSC------------EEEEETTSSSS-CEEEEEECTTSSEEEEEETTSEE
T ss_pred CceEEEEEec-CCCEEEEEECCCCEEEEeCCCc------------ceeeecccccC-ccEEEEECCCCCEEEEEeCCCeE
Confidence 34444 5566 8889999999999999999876 44455568886 59999999999999999999999
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecC
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (479)
++||+.++. .+..+.+|...|.+++|+|++ .+|++++.|
T Consensus 164 ~iwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d 202 (420)
T 3vl1_A 164 KIWSVKDGS----------------------------------------NPRTLIGHRATVTDIAIIDRG-RNVLSASLD 202 (420)
T ss_dssp EEEETTTCC----------------------------------------CCEEEECCSSCEEEEEEETTT-TEEEEEETT
T ss_pred EEEeCCCCc----------------------------------------CceEEcCCCCcEEEEEEcCCC-CEEEEEcCC
Confidence 999997532 236678899999999999998 689999999
Q ss_pred CeEEEEeCCCCCCCceeeecc---CC---------------------CCeEEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 011709 301 SCLILWDARVGTSPVIKVEKA---HD---------------------ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~---~~---------------------~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~ 356 (479)
|.|++||+++++ .+..+.. |. ..+.+++|+| ++.+|++|+.||.|++||++.
T Consensus 203 ~~v~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~- 278 (420)
T 3vl1_A 203 GTIRLWECGTGT--TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFS- 278 (420)
T ss_dssp SCEEEEETTTTE--EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTT-
T ss_pred CcEEEeECCCCc--eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCC-
Confidence 999999999887 4555543 33 4444555678 899999999999999999998
Q ss_pred CCCCCCCceeee-cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-cee
Q 011709 357 TSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSS 434 (479)
Q Consensus 357 ~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~ 434 (479)
+..+..+ ..|...|++++|+|+++.+|++++.||.|++||++.+..+ +......|.. +.+
T Consensus 279 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~-------------~~~~~~~~~~~v~~ 340 (420)
T 3vl1_A 279 -----KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP-------------VGEFLINEGTPINN 340 (420)
T ss_dssp -----CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC-------------SEEEEESTTSCEEE
T ss_pred -----CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc-------------hhhhhccCCCCceE
Confidence 5555555 4588999999999999866889999999999999874221 1112222444 555
Q ss_pred EEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 435 IKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 435 ~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
+ +.+++.+|++++. |+.|++|+...
T Consensus 341 ~-~~~~~~~l~s~~~-----d~~v~iw~~~~ 365 (420)
T 3vl1_A 341 V-YFAAGALFVSSGF-----DTSIKLDIISD 365 (420)
T ss_dssp E-EEETTEEEEEETT-----TEEEEEEEECC
T ss_pred E-EeCCCCEEEEecC-----CccEEEEeccC
Confidence 5 6668889999999 99999998765
No 65
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-34 Score=280.63 Aligned_cols=300 Identities=12% Similarity=0.137 Sum_probs=214.3
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
.+|.+.|++++|+|.++.+||+|+.||+|+|||+.+..... .......+ +|.. .|++++|+|++.+|++|+.
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~------~~~~~~~~-~h~~-~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE------VYSSSLTY-DCSS-TVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC------CCSCSEEE-ECSS-CEEEEEECTTSSEEEEEET
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc------ccceeeec-cCCC-CEEEEEEeCCCCEEEEEeC
Confidence 47899999999999677899999999999999997621100 01223333 4776 5999999999999999999
Q ss_pred CCcEEEEecC---CCccccccCCcc--ccc----------------CCCCCceeecCCCCCCCCCCCCCCCCCCCceeec
Q 011709 217 DKSVVLWSIQ---DHITSSATDPAT--AKS----------------AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN 275 (479)
Q Consensus 217 dg~i~vwd~~---~~~~~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (479)
||+|++||+. .+.......... ... .......+. ....++.+.+|+......+..+.
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV--ALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE--EEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE--EEeCCCeEEEEeCCCCeeeEEEc
Confidence 9999999995 221111000000 000 001111111 12346788899999999999998
Q ss_pred C--CCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeec-cCCCCeEEEEecCC---CCcEEEEEeCCCcEE
Q 011709 276 G--HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPL---DDNLILTGSADNSVR 349 (479)
Q Consensus 276 ~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~---~~~~l~tgs~dg~I~ 349 (479)
+ |...|++++|+|++ .+|++|+.||.|++||++++. .+..+. .|...|.+++|+|. ++.+|++|+.||.|+
T Consensus 210 ~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 210 NSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNV--LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp CCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE--EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred cCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCcc--EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 8 89999999999998 789999999999999999877 566554 78889999966541 678999999999999
Q ss_pred EEecCCCCCCCCCCceeeecC--------------------------CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCC
Q 011709 350 MFDRRNLTSNGVGSPINKFEG--------------------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~~--------------------------h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~ 403 (479)
+||+++ ++.+..+.+ |...|++++|+ +++ +|++|+.||.|++||+.
T Consensus 287 iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 287 IWNFVK------GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLN 358 (437)
T ss_dssp EEETTT------TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETT
T ss_pred EEEcCC------CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECC
Confidence 999987 444444432 66778999999 555 57899999999999999
Q ss_pred CCCccccCCCCCC--------CCCCeeEEE--------------eCCCCC-ceeEEEecC--CCeeeecCCCccccceeE
Q 011709 404 KVGKKVEQGPRTT--------NYPAGLFFQ--------------HAGHSP-SSSIKFVLR--ESCLVDNNHGLSYANKKI 458 (479)
Q Consensus 404 ~~~~~~~~~~~~~--------~~~~~l~~~--------------~~gh~~-~~~~~~sp~--~~~l~~~~~~~~~~d~~i 458 (479)
.+........... ...+.+.+. ..+|.. |.+++|+++ +.+|++++. ||.|
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~-----dG~I 433 (437)
T 3gre_A 359 ELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN-----SGLI 433 (437)
T ss_dssp CGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEET-----TSCE
T ss_pred CcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcC-----CceE
Confidence 8532221111000 000001111 123665 899999998 779999999 9999
Q ss_pred EEEe
Q 011709 459 KIYC 462 (479)
Q Consensus 459 ~i~~ 462 (479)
++|.
T Consensus 434 ~iw~ 437 (437)
T 3gre_A 434 GIFQ 437 (437)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9994
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-32 Score=268.87 Aligned_cols=278 Identities=13% Similarity=0.168 Sum_probs=204.2
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
.+|.+.|++++|+| ++.+|++|+.||+|++||+.++ +....+.+|.. .|++++|+|++++|++|+.
T Consensus 136 ~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~ 201 (420)
T 3vl1_A 136 QAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDG------------SNPRTLIGHRA-TVTDIAIIDRGRNVLSASL 201 (420)
T ss_dssp TSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC------------CCCEEEECCSS-CEEEEEEETTTTEEEEEET
T ss_pred ccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCC------------cCceEEcCCCC-cEEEEEEcCCCCEEEEEcC
Confidence 48999999999999 7889999999999999999987 56678889997 5999999999999999999
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
||+|++||++++........... .......+...... .......+...+.+++|+|++ .++++
T Consensus 202 d~~v~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~--------------~~~~~~~~~~~v~~~~~s~~~-~~l~~ 264 (420)
T 3vl1_A 202 DGTIRLWECGTGTTIHTFNRKEN--PHDGVNSIALFVGT--------------DRQLHEISTSKKNNLEFGTYG-KYVIA 264 (420)
T ss_dssp TSCEEEEETTTTEEEEEECBTTB--TTCCEEEEEEEECC--------------CSSCGGGCCCCCCTTCSSCTT-EEEEE
T ss_pred CCcEEEeECCCCceeEEeecCCC--CCCCccEEEEecCC--------------cceeeecccCcccceEEcCCC-CEEEE
Confidence 99999999987644322211000 00000000000000 001223356678888889988 78999
Q ss_pred EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCc-EEEEEeCCCcEEEEecCCCCCCCCCCceeeecC-CCCc
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-HSAA 374 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~ 374 (479)
++.||.|++||++++.. .......|...|.+++|+| ++. +|++|+.||.|++||+++.. .++..+.+ |...
T Consensus 265 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~l~~g~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~ 337 (420)
T 3vl1_A 265 GHVSGVITVHNVFSKEQ-TIQLPSKFTCSCNSLTVDG-NNANYIYAGYENGMLAQWDLRSPE-----CPVGEFLINEGTP 337 (420)
T ss_dssp EETTSCEEEEETTTCCE-EEEECCTTSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCTT-----SCSEEEEESTTSC
T ss_pred EcCCCeEEEEECCCCce-eEEcccccCCCceeEEEeC-CCCCEEEEEeCCCeEEEEEcCCCc-----CchhhhhccCCCC
Confidence 99999999999998873 2333446889999999999 776 99999999999999999831 45677776 6778
Q ss_pred EEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCC---eeeecCCCc
Q 011709 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRES---CLVDNNHGL 451 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~---~l~~~~~~~ 451 (479)
|.++.|. ++. +|++++.||.|++||+............ .........+..+.+++|+|++. .+++++.
T Consensus 338 v~~~~~~-~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~-- 408 (420)
T 3vl1_A 338 INNVYFA-AGA-LFVSSGFDTSIKLDIISDPESERPAIEF-----ETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK-- 408 (420)
T ss_dssp EEEEEEE-TTE-EEEEETTTEEEEEEEECCTTCCSCEECT-----TSCEEECCSSCCCCEEEEECCSSSSCEEEEEET--
T ss_pred ceEEEeC-CCC-EEEEecCCccEEEEeccCCCCCccceec-----cCccEEccCCcceEEEEEccCCCCcceEEEEcC--
Confidence 8888654 666 6789999999999999874322111000 11122223334499999999999 6777777
Q ss_pred cccceeEEEEeec
Q 011709 452 SYANKKIKIYCHL 464 (479)
Q Consensus 452 ~~~d~~i~i~~~~ 464 (479)
+|.+.+|+..
T Consensus 409 ---~g~~~~~~~~ 418 (420)
T 3vl1_A 409 ---NNFCALYNLS 418 (420)
T ss_dssp ---TTEEEEEESC
T ss_pred ---CceEEEEecc
Confidence 7899999864
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.6e-33 Score=265.42 Aligned_cols=256 Identities=15% Similarity=0.232 Sum_probs=204.8
Q ss_pred cCCCceeEEEecCC---CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEec-----cCCCceeeeeecCC--
Q 011709 138 IHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG-----HQDNAEFALAMCPT-- 207 (479)
Q Consensus 138 ~h~~~V~~l~~~p~---~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~~v~~l~~s~~-- 207 (479)
+|.++|++++|+|. ....+++++.++.|+|||+.++ .....+.. |.. .|++++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~------------~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 82 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ------------GEIRLLQSYVDADADE-NFYTCAWTYDSN 82 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG------------GCEEEEEEEECSCTTC-CEEEEEEEECTT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC------------cEEEeeeeccccCCCC-cEEEEEeccCCC
Confidence 79999999999983 3445555556669999999876 33334443 333 5899999999
Q ss_pred --CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEE
Q 011709 208 --EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (479)
Q Consensus 208 --~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (479)
+.+|++|+.||.|++||+.++. .+..+.+|...|.+++
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~----------------------------------------~~~~~~~~~~~i~~~~ 122 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQ----------------------------------------CIKHYVGHGNAINELK 122 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCC----------------------------------------EEEEEESCCSCEEEEE
T ss_pred CCCCEEEEecCCCEEEEEEchhce----------------------------------------EeeeecCCCCcEEEEE
Confidence 6689999999999999986532 2356778999999999
Q ss_pred Eee-CCCcEEEEEecCCeEEEEeCCCCCCCceeee---ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCC
Q 011709 286 FCP-SSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (479)
Q Consensus 286 ~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~ 361 (479)
|+| ++ .+|++++.||.|++||+++++ ....+ ..|...|.+++|+| ++.+|++|+.||.|++||++.
T Consensus 123 ~~~~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~------ 192 (366)
T 3k26_A 123 FHPRDP-NLLLSVSKDHALRLWNIQTDT--LVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINS------ 192 (366)
T ss_dssp ECSSCT-TEEEEEETTSCEEEEETTTTE--EEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCS------
T ss_pred ECCCCC-CEEEEEeCCCeEEEEEeecCe--EEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCC------
Confidence 999 55 799999999999999999887 55555 68999999999999 999999999999999999987
Q ss_pred CCceee----------------------------ecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCC
Q 011709 362 GSPINK----------------------------FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 413 (479)
Q Consensus 362 ~~~~~~----------------------------~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~ 413 (479)
++.+.. ..+|...|.+++|+ +. +|++++.||.|++||++..........
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~ 269 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIK 269 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCC
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccc
Confidence 333332 33499999999999 45 678999999999999988544333322
Q ss_pred CCCCCCCeeEEEeCCCCC-ceeEEEecC--CCeeeecCCCccccceeEEEEeecc
Q 011709 414 RTTNYPAGLFFQHAGHSP-SSSIKFVLR--ESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 414 ~~~~~~~~l~~~~~gh~~-~~~~~~sp~--~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
... .....+....+|.. +.+++|+|+ +.+|++++. ||.|++|+...
T Consensus 270 ~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~-----dg~i~vwd~~~ 318 (366)
T 3k26_A 270 PSE-SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ-----VGKLYVWDLEV 318 (366)
T ss_dssp TTC-CCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT-----TSCEEEEECCS
T ss_pred cCC-cchheeccccccCCcEEEEEEcCCCCCcEEEEEec-----CCcEEEEECCC
Confidence 222 23355666777776 999999999 999999999 99999998765
No 68
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8e-32 Score=250.28 Aligned_cols=253 Identities=17% Similarity=0.240 Sum_probs=196.3
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|+- .+|. +++.+..++||+++... ........+|.++|++
T Consensus 11 ~V~~~~~s~~g--------~~la-----s~s~D~~v~iw~~~~~~-------------------~~~~~~l~gH~~~V~~ 58 (297)
T 2pm7_B 11 MIHDAVMDYYG--------KRMA-----TCSSDKTIKIFEVEGET-------------------HKLIDTLTGHEGPVWR 58 (297)
T ss_dssp CEEEEEECTTS--------SEEE-----EEETTSCEEEEEBCSSC-------------------BCCCEEECCCSSCEEE
T ss_pred ceEEEEECCCC--------CEEE-----EEeCCCEEEEEecCCCC-------------------cEEEEEEccccCCeEE
Confidence 56678887752 2333 33478889999764210 0013445689999999
Q ss_pred EEecCC-CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCcEEEecCCCcEEE
Q 011709 146 IRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSGGKDKSVVL 222 (479)
Q Consensus 146 l~~~p~-~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~l~s~s~dg~i~v 222 (479)
++|+|+ ++.+||+|+.||+|+|||+.++. ......+.+|.. .|.+++|+|+ +.+|++|+.||+|++
T Consensus 59 v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~----------~~~~~~~~~h~~-~v~~v~~~p~~~g~~l~s~s~d~~v~~ 127 (297)
T 2pm7_B 59 VDWAHPKFGTILASCSYDGKVMIWKEENGR----------WSQIAVHAVHSA-SVNSVQWAPHEYGPMLLVASSDGKVSV 127 (297)
T ss_dssp EEECCGGGCSEEEEEETTTEEEEEEBSSSC----------BCCCEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred EEecCCCcCCEEEEEcCCCEEEEEEcCCCc----------eEEEEEeecCCC-ceeEEEeCcCCCCcEEEEEECCCcEEE
Confidence 999863 47899999999999999998751 234566788887 5999999998 789999999999999
Q ss_pred EecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC------------
Q 011709 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS------------ 290 (479)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~------------ 290 (479)
||++..... ....+.+|...|.+++|+|++
T Consensus 128 wd~~~~~~~--------------------------------------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~ 169 (297)
T 2pm7_B 128 VEFKENGTT--------------------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 169 (297)
T ss_dssp EEBCSSSCB--------------------------------------CCEEEECCSSCEEEEEECCCC------------
T ss_pred EEecCCCce--------------------------------------eeeeeecccCccceEeecCCcccccccCCCCCC
Confidence 999753210 014567899999999999973
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCC--ceeeeccCCCCeEEEEecCCC---CcEEEEEeCCCcEEEEecCCCCCCCCCC-c
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGS-P 364 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~sp~~---~~~l~tgs~dg~I~iwd~~~~~~~~~~~-~ 364 (479)
..+|++|+.|++|++||++++... ....+.+|...|.+++|+| + +.+|++|+.|++|+|||++... .. .
T Consensus 170 ~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp-~~~~~~~las~s~D~~v~iWd~~~~~----~~~~ 244 (297)
T 2pm7_B 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYMASVSQDRTCIIWTQDNEQ----GPWK 244 (297)
T ss_dssp CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEETTSCEEEEEESSTT----SCCE
T ss_pred cceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC-CCCCceEEEEEECCCcEEEEEeCCCC----Cccc
Confidence 258999999999999999876521 3456779999999999999 6 5899999999999999998632 11 1
Q ss_pred eeee--cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 365 INKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 365 ~~~~--~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
...+ ..|...|.+++|+|+++. ||+++.||.|+||+....
T Consensus 245 ~~~~~~~~~~~~v~~~~~s~~g~~-las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 245 KTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENLE 286 (297)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCC-EEEEETTSCEEEEEECTT
T ss_pred eeeeecccCCCcEEEEEECCCCCE-EEEEcCCCcEEEEEECCC
Confidence 1223 568889999999999995 789999999999998753
No 69
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=267.26 Aligned_cols=291 Identities=15% Similarity=0.170 Sum_probs=221.8
Q ss_pred eeEEEecCCCceeEEEecCCCCc-EEEEEeCCCcEEEEEC----CCCCCccccCCCCCCCCcEEEe----------ccCC
Q 011709 132 KKHKTIIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDV----EAQPNRHAVLGATNSRPDLILT----------GHQD 196 (479)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~-~lat~s~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~----------~h~~ 196 (479)
+......|.++|++++|+| ++. +||+|+.||.|+|||+ .++...... .....+. +|..
T Consensus 37 ~~~~~~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 109 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKL------TIIAELRHPFALSASSGKTTN 109 (425)
T ss_dssp EECEEEEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEE------EEEEEEECCCCCC------CB
T ss_pred hheeeeeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccc------cccccccccccccccccCCCC
Confidence 3566677889999999999 666 9999999999999999 766310000 0112222 2554
Q ss_pred CceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCC----cccccCCCCCceeecCCCCCCCCCCCCCCCCCCCce
Q 011709 197 NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP----ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG 272 (479)
Q Consensus 197 ~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (479)
.|++++|+|++++|++|+.||.|++||.... ....... ............+.. ...++.+.+|+......+.
T Consensus 110 -~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 110 -QVTCLAWSHDGNSIVTGVENGELRLWNKTGA-LLNVLNFHRAPIVSVKWNKDGTHIIS--MDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEECCCCSCEEEEEECTTSSEEEE--EETTCCEEEEETTTTEEEE
T ss_pred -ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-eeeeccCCCccEEEEEECCCCCEEEE--EecCCeEEEEECCCCcEEE
Confidence 5999999999999999999999999994332 2111110 111111222222221 1246778888888888888
Q ss_pred eecCCCCc---------------eEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCc
Q 011709 273 IYNGHEDT---------------VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN 337 (479)
Q Consensus 273 ~~~~h~~~---------------v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 337 (479)
.+..+... +.+++|++++ .+++++.||.|++||++++. ....+..|...|.+++|+| ++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~ 260 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKT--PTGKLIGHHGPISVLEFND-TNK 260 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSS--CSEEECCCSSCEEEEEEET-TTT
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCc--eeeeeccCCCceEEEEECC-CCC
Confidence 88877776 9999999986 58999999999999999887 5667778999999999999 899
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCC
Q 011709 338 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 417 (479)
Q Consensus 338 ~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~ 417 (479)
+|++++.||.|++||++. +.++..+.+|...|.+++|+|++ +|++++.||.|++||++..
T Consensus 261 ~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~------------ 320 (425)
T 1r5m_A 261 LLLSASDDGTLRIWHGGN------GNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQN------------ 320 (425)
T ss_dssp EEEEEETTSCEEEECSSS------BSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTT------------
T ss_pred EEEEEcCCCEEEEEECCC------CccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCC------------
Confidence 999999999999999998 67888899999999999999998 5789999999999999874
Q ss_pred CCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 418 YPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 418 ~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
..+....+|.. +.+++|+|++.+|++++. +|.|++|+....
T Consensus 321 ---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~~~~~~ 362 (425)
T 1r5m_A 321 ---TLLALSIVDGVPIFAGRISQDGQKYAVAFM-----DGQVNVYDLKKL 362 (425)
T ss_dssp ---EEEEEEECTTCCEEEEEECTTSSEEEEEET-----TSCEEEEECHHH
T ss_pred ---cEeEecccCCccEEEEEEcCCCCEEEEEEC-----CCeEEEEECCCC
Confidence 34445556654 899999999999999998 999999987643
No 70
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.3e-33 Score=268.09 Aligned_cols=254 Identities=12% Similarity=0.150 Sum_probs=206.2
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC----C---
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT----E--- 208 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~----~--- 208 (479)
..+|.+.|++++|+| .+||+|+.||+|+|||+.+..... .......+.+|.. .|++++|+|+ +
T Consensus 12 ~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~------~~~~~~~~~~h~~-~v~~~~~~~~~~~~g~~~ 81 (397)
T 1sq9_A 12 GKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNEN------PKDKSYSHFVHKS-GLHHVDVLQAIERDAFEL 81 (397)
T ss_dssp SSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCC------GGGGEEEEECCTT-CEEEEEEEEEEETTTEEE
T ss_pred hhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCccccc------CCCcceEEecCCC-cEEEEEEecccccCCccc
Confidence 347999999999988 699999999999999999873211 1235678889987 5999999999 9
Q ss_pred CcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC-----CCceEE
Q 011709 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-----EDTVED 283 (479)
Q Consensus 209 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~ 283 (479)
.+|++++.||.|++||+.+...... .....+..| ...|.+
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~v~~ 126 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKK-----------------------------------VIFEKLDLLDSDMKKHSFWA 126 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCC-----------------------------------EEEEEECCSCTTGGGSCEEE
T ss_pred cEEEEEcCCCCEEEEEccCCccccc-----------------------------------ccceeecccccccCCCcEEE
Confidence 9999999999999999975432100 012556667 589999
Q ss_pred EEEe----eCCCcE-EEEEecCCeEEEEeCCC------CCCCcee-----ee-------ccCCCCeEEEEecCCCCcEEE
Q 011709 284 VTFC----PSSAQE-FCSVGDDSCLILWDARV------GTSPVIK-----VE-------KAHDADLHCVDWNPLDDNLIL 340 (479)
Q Consensus 284 l~~~----~~~~~~-l~s~~~dg~i~iwd~~~------~~~~~~~-----~~-------~~~~~~v~~l~~sp~~~~~l~ 340 (479)
++|+ |++ .+ |++++.||.|++||+++ +. .+. .+ ..|...|.+++|+| ++ +|+
T Consensus 127 ~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~ 201 (397)
T 1sq9_A 127 LKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSL--TLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIA 201 (397)
T ss_dssp EEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHT--TTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEE
T ss_pred EEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccccc--eeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEE
Confidence 9999 988 67 99999999999999998 55 232 44 45889999999999 88 999
Q ss_pred EEeCCCcEEEEecCCCCCCCCCCceeeecC---C---CCcEEEEEEecCCCcEEEEEeCC---CCEEEEeCCCCCccccC
Q 011709 341 TGSADNSVRMFDRRNLTSNGVGSPINKFEG---H---SAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKVGKKVEQ 411 (479)
Q Consensus 341 tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~---h---~~~v~~l~~~p~~~~llas~s~D---g~v~iwd~~~~~~~~~~ 411 (479)
+|+.||.|++||++. ++++..+.. | ...|.+++|+|++. +|++++.| |.|++||++..
T Consensus 202 ~~~~dg~i~i~d~~~------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~------ 268 (397)
T 1sq9_A 202 TGFNNGTVQISELST------LRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFG------ 268 (397)
T ss_dssp EECTTSEEEEEETTT------TEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTC------
T ss_pred EEeCCCcEEEEECCC------CceeEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCC------
Confidence 999999999999998 688888988 9 99999999999998 57799999 99999999874
Q ss_pred CCCCCCCCCeeEEEeCC-------------CCC-ceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 412 GPRTTNYPAGLFFQHAG-------------HSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 412 ~~~~~~~~~~l~~~~~g-------------h~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
..+....+ |.. +.+++|+|++.+|++++. ||.|++|+....
T Consensus 269 ---------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~ 323 (397)
T 1sq9_A 269 ---------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-----DGKLRFWDVKTK 323 (397)
T ss_dssp ---------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-----TSEEEEEETTTT
T ss_pred ---------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC-----CCeEEEEEcCCC
Confidence 22333344 555 899999999999999998 999999987543
No 71
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=293.37 Aligned_cols=261 Identities=18% Similarity=0.252 Sum_probs=212.8
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCcEEE
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLS 213 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~l~s 213 (479)
..+|.+.|++++|+| ++.+||+|+.||+|+|||+... .......+.+|.+ .|++++|+|+ +++|++
T Consensus 5 l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~----------~~~~~~~l~~h~~-~V~~l~~s~~~~~~~l~s 72 (753)
T 3jro_A 5 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILAS 72 (753)
T ss_dssp ---CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETT----------EEEEEEEECCCSS-CEEEEEECCTTSCSEEEE
T ss_pred cccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCC----------CCccceeccCCcC-ceEEEEecCCCCCCEEEE
Confidence 458999999999999 7889999999999999999854 2255677889987 5999999988 899999
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC--CC
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SA 291 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~ 291 (479)
|+.||.|++||+.++.. ..+..+.+|...|.+++|+|+ +
T Consensus 73 ~s~Dg~I~vwd~~~~~~--------------------------------------~~~~~~~~h~~~V~~v~~sp~~~~- 113 (753)
T 3jro_A 73 CSYDGKVLIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG- 113 (753)
T ss_dssp EETTSCEEEEEEETTEE--------------------------------------EEEEEECCCSSCEEEEEECCGGGC-
T ss_pred EeCCCeEEEEECCCCcc--------------------------------------cccccccCCCCCeEEEEECCCCCC-
Confidence 99999999999975321 122566779999999999998 6
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCC------------CCcEEEEEeCCCcEEEEecCCCCCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN 359 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~------------~~~~l~tgs~dg~I~iwd~~~~~~~ 359 (479)
.++++|+.||.|++||++++.........+|...|.+++|+|. ++.+|++|+.||.|++||++....
T Consensus 114 ~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~- 192 (753)
T 3jro_A 114 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ- 192 (753)
T ss_dssp SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-
T ss_pred CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-
Confidence 7899999999999999998854445566789999999999994 489999999999999999987321
Q ss_pred CCCCceeeecCCCCcEEEEEEecC---CCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeE
Q 011709 360 GVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSI 435 (479)
Q Consensus 360 ~~~~~~~~~~~h~~~v~~l~~~p~---~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~ 435 (479)
...++..+.+|...|++++|+|+ +. +|++++.||.|++||+........ .......+|.. +.++
T Consensus 193 -~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~----------~~~~~~~~~~~~v~~l 260 (753)
T 3jro_A 193 -TYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWRA 260 (753)
T ss_dssp -EEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSSCCB----------CCBSSSSCCSSCCCCE
T ss_pred -cceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCCcce----------eEEeccCCCCCceEEE
Confidence 01456778899999999999999 66 688999999999999987422111 11122334544 8999
Q ss_pred EEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 436 KFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 436 ~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
+|+|++.++++++. ||.|++|+...
T Consensus 261 ~~spdg~~l~s~s~-----Dg~I~vwd~~~ 285 (753)
T 3jro_A 261 SWSLSGNVLALSGG-----DNKVTLWKENL 285 (753)
T ss_dssp EECTTTCCEEEECS-----SSCEECCBCCS
T ss_pred EEcCCCCEEEEEcC-----CCEEEEEecCC
Confidence 99999999999999 99999998763
No 72
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1e-32 Score=267.73 Aligned_cols=258 Identities=18% Similarity=0.327 Sum_probs=207.8
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC-CCCcEEEecCCCc
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDKS 219 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-~~~~l~s~s~dg~ 219 (479)
.....++++|....++++++.||.|+|||+...... ......+.+|.. .|++++|+| ++.+|++|+.||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~--------~~~~~~~~~h~~-~V~~~~~~p~~~~~l~s~s~dg~ 105 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV--------DKNVPLVCGHTA-PVLDIAWCPHNDNVIASGSEDCT 105 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC--------CTTCCCBCCCSS-CEEEEEECTTCTTEEEEEETTSE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC--------CCCCceEecCCC-CEEEEEeCCCCCCEEEEEeCCCe
Confidence 445668888866566777899999999999764211 123445778987 599999999 8999999999999
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
|++||+.++.... ....++..+.+|...|.+++|+|++..+|++++.
T Consensus 106 v~vw~~~~~~~~~---------------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~ 152 (402)
T 2aq5_A 106 VMVWEIPDGGLVL---------------------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152 (402)
T ss_dssp EEEEECCTTCCSS---------------------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred EEEEEccCCCCcc---------------------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence 9999997643211 1112347788999999999999998679999999
Q ss_pred CCeEEEEeCCCCCCCceeee--ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee-cCCCCc-E
Q 011709 300 DSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAA-V 375 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~-v 375 (479)
||.|++||+++++ .+..+ ..|...|.+++|+| ++.+|++|+.||.|++||++. +..+..+ .+|.+. +
T Consensus 153 dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~ 223 (402)
T 2aq5_A 153 DNVILVWDVGTGA--AVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRK------GTVVAEKDRPHEGTRP 223 (402)
T ss_dssp TSCEEEEETTTTE--EEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTT------TEEEEEEECSSCSSSC
T ss_pred CCEEEEEECCCCC--ccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCC------CceeeeeccCCCCCcc
Confidence 9999999999887 56666 78999999999999 999999999999999999998 6788888 788876 8
Q ss_pred EEEEEecCCCcEEEEE---eCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCcc
Q 011709 376 LCVQWSPDKSSVFGSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLS 452 (479)
Q Consensus 376 ~~l~~~p~~~~llas~---s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~ 452 (479)
.+++|+|++. +|++| +.|+.|++||++.... +...+....+..+.+++|+|++.+|++++..
T Consensus 224 ~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~-- 288 (402)
T 2aq5_A 224 VHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEE------------PLSLQELDTSSGVLLPFFDPDTNIVYLCGKG-- 288 (402)
T ss_dssp CEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSS------------CSEEEECCCCSSCEEEEEETTTTEEEEEETT--
T ss_pred eEEEEcCCCc-EEEEeccCCCCceEEEEcCccccC------------CceEEeccCCCceeEEEEcCCCCEEEEEEcC--
Confidence 9999999988 57788 7899999999987421 1223344445569999999999999755433
Q ss_pred ccceeEEEEeeccc
Q 011709 453 YANKKIKIYCHLEA 466 (479)
Q Consensus 453 ~~d~~i~i~~~~~~ 466 (479)
||.|++|+....
T Consensus 289 --dg~i~i~d~~~~ 300 (402)
T 2aq5_A 289 --DSSIRYFEITSE 300 (402)
T ss_dssp --CSCEEEEEECSS
T ss_pred --CCeEEEEEecCC
Confidence 899999987643
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=297.84 Aligned_cols=289 Identities=13% Similarity=0.118 Sum_probs=203.2
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEecc------------------CCCc
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH------------------QDNA 198 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h------------------~~~~ 198 (479)
.+|.+.|++++|+|.++.+|++|+.||+| |||+.+. ++...+.+| .. .
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~------------~~~~~~~~~~~~g~~~~~~~~~~~~~h~~-~ 213 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN------------EIKQSFIYELPPFAPGGDFSEKTNEKRTP-K 213 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT------------EEEEEECCCBCTTCCCSTTCCCTTSCBCC-C
T ss_pred ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC------------ceEEEEecccCCcCCCcccccccccccCC-C
Confidence 47999999999999767899999999999 9999887 333344433 33 5
Q ss_pred eeeeeecCCCCcEEEecCCCcEEEEecCCCccccc--c-----C-------------C--cccccC----CCCC-ceeec
Q 011709 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA--T-----D-------------P--ATAKSA----GSSG-SIIKQ 251 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~-----~-------------~--~~~~~~----~~~~-~~~~~ 251 (479)
|++++|+|+|.+|++|+.||+|++||++++..... . . . ...... .... .++..
T Consensus 214 V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s 293 (902)
T 2oaj_A 214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS 293 (902)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE
T ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEe
Confidence 99999999999999999999999999987543210 0 0 0 000000 0000 00000
Q ss_pred C---------------------------------------------------------C--C---------------CCC
Q 011709 252 S---------------------------------------------------------P--K---------------PGD 257 (479)
Q Consensus 252 ~---------------------------------------------------------~--~---------------~~~ 257 (479)
+ . . ..+
T Consensus 294 g~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~d 373 (902)
T 2oaj_A 294 HKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGN 373 (902)
T ss_dssp EECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETT
T ss_pred CCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCC
Confidence 0 0 0 012
Q ss_pred CCCCCCCCCCCCCc-----------------------------------------eeecCCCCceEEEEEeeCCCcEEEE
Q 011709 258 GNDKAADGPSVGPR-----------------------------------------GIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 258 ~~~~~~~~~~~~~~-----------------------------------------~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
+.+.+|+.....+. ..+.+|...+.+++|+|++ .+|++
T Consensus 374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laS 452 (902)
T 2oaj_A 374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFIT 452 (902)
T ss_dssp SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEE
T ss_pred CcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEE
Confidence 33444443322111 1123344445555567777 78999
Q ss_pred EecCCeEEEEeCCCCCCCc---eee-ec-----cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCC--------
Q 011709 297 VGDDSCLILWDARVGTSPV---IKV-EK-----AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN-------- 359 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~---~~~-~~-----~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~-------- 359 (479)
|+.|++|++||+.++.... ... +. +|...|++|+|+| ++++||+|+.||+|+|||+......
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~ 531 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPES 531 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCC
Confidence 9999999999998875211 111 11 7889999999999 9999999999999999999863100
Q ss_pred CC-------------------------------CCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCcc
Q 011709 360 GV-------------------------------GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 408 (479)
Q Consensus 360 ~~-------------------------------~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~ 408 (479)
.. .+++..+.+|.+.|++|+|+|+| +||+|+.|++|+|||++..
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG--~lAsgs~D~tv~lwd~~~~--- 606 (902)
T 2oaj_A 532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG--FVGIAYAAGSLMLIDRRGP--- 606 (902)
T ss_dssp ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS--EEEEEETTSEEEEEETTTT---
T ss_pred cccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc--EEEEEeCCCcEEEEECCCC---
Confidence 00 02467788999999999999999 5899999999999998763
Q ss_pred ccCCCCCCCCCCeeEE-----Ee-CCCCC-ceeEEEe-----cCC---CeeeecCCCccccceeEEEEee
Q 011709 409 VEQGPRTTNYPAGLFF-----QH-AGHSP-SSSIKFV-----LRE---SCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 409 ~~~~~~~~~~~~~l~~-----~~-~gh~~-~~~~~~s-----p~~---~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
.+++ .+ .||.. |++++|+ ||| .+|++++. |++|++|++
T Consensus 607 ------------~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~-----D~tv~~wd~ 659 (902)
T 2oaj_A 607 ------------AIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTD-----MGEVITYKI 659 (902)
T ss_dssp ------------EEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEET-----TSEEEEEEE
T ss_pred ------------eEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEec-----CCcEEEEEE
Confidence 2222 12 27877 9999999 885 89999999 999999987
No 74
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=261.41 Aligned_cols=242 Identities=15% Similarity=0.213 Sum_probs=192.3
Q ss_pred eEEEecCCCceeEEEecCCC--CcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCc
Q 011709 133 KHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~--~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~ 210 (479)
.....+|.+.|++++|+|+. +.+||+|+.||.|+|||+.+.. ......+.+|.. .|++++|+|++++
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~h~~-~v~~~~~~~~~~~ 100 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG----------QTIPKAQQMHTG-PVLDVCWSDDGSK 100 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS----------CEEEEEEEECSS-CEEEEEECTTSSE
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC----------ceeEEEeccccC-CEEEEEECcCCCE
Confidence 44456899999999999954 7999999999999999998731 123367888987 5999999999999
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE--ee
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF--CP 288 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~ 288 (479)
|++|+.||.|++||+.+... ..+.+|...|.+++| ++
T Consensus 101 l~s~~~dg~v~iwd~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~ 139 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQA-----------------------------------------IQIAQHDAPVKTIHWIKAP 139 (368)
T ss_dssp EEEEETTSEEEEEETTTTEE-----------------------------------------EEEEECSSCEEEEEEEECS
T ss_pred EEEEcCCCcEEEEEcCCCCc-----------------------------------------eeeccccCceEEEEEEeCC
Confidence 99999999999999975432 335568999999999 77
Q ss_pred CCCcEEEEEecCCeEEEEeCCCCCCCceeeeccC-----------------------------------------CCCeE
Q 011709 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-----------------------------------------DADLH 327 (479)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------------------------------~~~v~ 327 (479)
++ .+|++++.||.|++||+++++ .+..+..+ ...+.
T Consensus 140 ~~-~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 216 (368)
T 3mmy_A 140 NY-SCVMTGSWDKTLKFWDTRSSN--PMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR 216 (368)
T ss_dssp SC-EEEEEEETTSEEEEECSSCSS--CSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEE
T ss_pred CC-CEEEEccCCCcEEEEECCCCc--EEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCc
Confidence 77 789999999999999999876 33333222 23344
Q ss_pred EEEecCCCCc----EEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC------------cEEEEEEecCCCcEEEEE
Q 011709 328 CVDWNPLDDN----LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA------------AVLCVQWSPDKSSVFGSS 391 (479)
Q Consensus 328 ~l~~sp~~~~----~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~------------~v~~l~~~p~~~~llas~ 391 (479)
++++.+ +.. .+++|+.||.|++||++.... ...+..+.+|.. .|++++|+|++++ |+++
T Consensus 217 ~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~ 291 (368)
T 3mmy_A 217 CVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNP---AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATV 291 (368)
T ss_dssp EEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCH---HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-EEEE
T ss_pred eEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCc---cccceeeeeeecccccccccccccceEEEEEecCCCE-EEEE
Confidence 444444 332 399999999999999987320 045677777776 7999999999985 6799
Q ss_pred eCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCC
Q 011709 392 AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 392 s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~ 449 (479)
+.||.|+|||+..+ .++....+|.. +.+++|+|++.+|++++.
T Consensus 292 ~~dg~i~iwd~~~~---------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 292 GSDGRFSFWDKDAR---------------TKLKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp ETTSCEEEEETTTT---------------EEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred ccCCeEEEEECCCC---------------cEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence 99999999999874 44556667766 899999999999999987
No 75
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.6e-31 Score=247.92 Aligned_cols=250 Identities=17% Similarity=0.329 Sum_probs=204.0
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
..+.-+|...|++++|+| ++++||+|+.||+|+|||+.++ +....+.+|... +.+ +++++..|+
T Consensus 60 ~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~------------~~~~~~~~h~~~-~~~--~~~~~~~l~ 123 (318)
T 4ggc_A 60 LLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQ------------KRLRNMTSHSAR-VGS--LSWNSYILS 123 (318)
T ss_dssp EEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSSC-EEE--EEEETTEEE
T ss_pred EEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCc------------eeEEEecCccce-EEE--eecCCCEEE
Confidence 444457889999999999 8889999999999999999988 667788899863 544 455677899
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+|+.++.+++|+...... .+..+.+|...+..+.+++++ .
T Consensus 124 s~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~-~ 163 (318)
T 4ggc_A 124 SGSRSGHIHHHDVRVAEH---------------------------------------HVATLSGHSQEVCGLRWAPDG-R 163 (318)
T ss_dssp EEETTSEEEEEETTSSSC---------------------------------------EEEEEECCSSCEEEEEECTTS-S
T ss_pred EEecCCceEeeecCCCce---------------------------------------eEEEEcCccCceEEEEEcCCC-C
Confidence 999999999999864322 235677899999999999998 7
Q ss_pred EEEEEecCCeEEEEeCCCCCC--CceeeeccCCCCeEEEEecCCCCcEE--EEEeCCCcEEEEecCCCCCCCCCCceeee
Q 011709 293 EFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLI--LTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~l--~tgs~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
++++++.||.|++||+++++. ........+...|.+++++|.+..++ ++++.++.|++||.+. ..... .
T Consensus 164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~------~~~~~-~ 236 (318)
T 4ggc_A 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS------GACLS-A 236 (318)
T ss_dssp EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT------CCEEE-E
T ss_pred EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc------ccccc-c
Confidence 899999999999999998662 12344557888999999999656655 4566789999999987 34443 4
Q ss_pred cCCCCcEEEEEEecCCCcEEEE-EeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeee
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVD 446 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas-~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~ 446 (479)
..+...+..+.|+|++..+++. ++.|+.|+|||++++ +++....||.. |++++|+|++.+|++
T Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---------------~~~~~l~gH~~~V~~l~~spdg~~l~S 301 (318)
T 4ggc_A 237 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---------------AKVAELKGHTSRVLSLTMSPDGATVAS 301 (318)
T ss_dssp EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 4577889999999999975533 347999999999874 45667788987 999999999999999
Q ss_pred cCCCccccceeEEEEeecc
Q 011709 447 NNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 447 ~~~~~~~~d~~i~i~~~~~ 465 (479)
++. ||+|++|++.+
T Consensus 302 ~s~-----D~~v~iWd~~~ 315 (318)
T 4ggc_A 302 AAA-----DETLRLWRCFE 315 (318)
T ss_dssp EET-----TTEEEEECCSC
T ss_pred Eec-----CCeEEEEECCC
Confidence 999 99999998754
No 76
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.9e-32 Score=254.72 Aligned_cols=255 Identities=19% Similarity=0.212 Sum_probs=195.7
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|+- ..|. +++.+..++||++.... ........+|.++|++
T Consensus 15 ~V~~v~~s~~g--------~~la-----sgs~D~~v~lwd~~~~~-------------------~~~~~~l~gH~~~V~~ 62 (316)
T 3bg1_A 15 MIHDAQMDYYG--------TRLA-----TCSSDRSVKIFDVRNGG-------------------QILIADLRGHEGPVWQ 62 (316)
T ss_dssp CEEEEEECGGG--------CEEE-----EEETTTEEEEEEEETTE-------------------EEEEEEEECCSSCEEE
T ss_pred eEEEeeEcCCC--------CEEE-----EEeCCCeEEEEEecCCC-------------------cEEEEEEcCCCccEEE
Confidence 67788887751 2332 34478899999865210 0113445689999999
Q ss_pred EEecCC-CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCcEEEecCCCcEEE
Q 011709 146 IRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSGGKDKSVVL 222 (479)
Q Consensus 146 l~~~p~-~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~l~s~s~dg~i~v 222 (479)
++|+|+ ++.+||+|+.|++|+|||+.++. ......+.+|.. .|.+++|+|+ +.+|++|+.||+|++
T Consensus 63 v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~----------~~~~~~~~~h~~-~V~~v~~~p~~~g~~lasgs~D~~i~l 131 (316)
T 3bg1_A 63 VAWAHPMYGNILASCSYDRKVIIWREENGT----------WEKSHEHAGHDS-SVNSVCWAPHDYGLILACGSSDGAISL 131 (316)
T ss_dssp EEECCGGGSSCEEEEETTSCEEEECCSSSC----------CCEEEEECCCSS-CCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred EEeCCCCCCCEEEEEECCCEEEEEECCCCc----------ceEEEEccCCCC-ceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence 999863 57899999999999999998751 234456788987 5899999998 789999999999999
Q ss_pred EecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC------------
Q 011709 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS------------ 290 (479)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~------------ 290 (479)
||+...... .....+.+|...|.+++|+|+.
T Consensus 132 wd~~~~~~~-------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 174 (316)
T 3bg1_A 132 LTYTGEGQW-------------------------------------EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ 174 (316)
T ss_dssp EEECSSSCE-------------------------------------EECCBTTSSSSCBCCCEECCCCCC------CCSC
T ss_pred EecCCCCCc-------------------------------------ceeeeeccccCCcceEEEccccCCcccccccccc
Confidence 999753110 0013455688889999998873
Q ss_pred ----CcEEEEEecCCeEEEEeCCCCC-CCceeeeccCCCCeEEEEecCCCC----cEEEEEeCCCcEEEEecCCCCCCCC
Q 011709 291 ----AQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDD----NLILTGSADNSVRMFDRRNLTSNGV 361 (479)
Q Consensus 291 ----~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~----~~l~tgs~dg~I~iwd~~~~~~~~~ 361 (479)
..+|++++.|++|++||++... ......+.+|...|.+++|+| ++ .+|++|+.||+|+|||++.....
T Consensus 175 ~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp-~~~~~~~~las~s~D~~v~iw~~~~~~~~-- 251 (316)
T 3bg1_A 175 KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP-SIGLPTSTIASCSQDGRVFIWTCDDASSN-- 251 (316)
T ss_dssp CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC-CSSCSCCEEEEEETTCEEEEEECSSTTCC--
T ss_pred CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC-CCCCCCceEEEEcCCCeEEEEEccCcccc--
Confidence 2579999999999999997543 124566789999999999999 64 89999999999999999863210
Q ss_pred CCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 362 ~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
......+..|...|.+++|+|+++. ||+++.|+.|+||+...
T Consensus 252 ~~~~~~~~~~~~~v~~v~~sp~g~~-las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 252 TWSPKLLHKFNDVVWHVSWSITANI-LAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCBCCEEEECSSCEEEEEECTTTCC-EEEEESSSCEEEEEECT
T ss_pred chhhhhhhcCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEECC
Confidence 1123345678999999999999995 78999999999999864
No 77
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-31 Score=259.18 Aligned_cols=246 Identities=15% Similarity=0.238 Sum_probs=202.4
Q ss_pred eEEEecCCCc--eeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEec-cCCCceeeeeecCCCC
Q 011709 133 KHKTIIHPGE--VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG-HQDNAEFALAMCPTEP 209 (479)
Q Consensus 133 ~~~~~~h~~~--V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~v~~l~~s~~~~ 209 (479)
....-+|.+. ++++.|++ ..+++++.||.|+|||+.++ .....+.. |.. .|++++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~------------~~~~~~~~~~~~-~v~~v~~s~~~~ 147 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSG------------SVSALAETDEST-YVASVKWSHDGS 147 (401)
T ss_dssp EEECTTCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTC------------CEEEEEECCTTC-CEEEEEECTTSS
T ss_pred eeeCCCCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCC------------cEeEeeecCCCC-CEEEEEECCCCC
Confidence 3444466655 44566654 34777889999999999987 44445555 554 699999999999
Q ss_pred cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC
Q 011709 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (479)
Q Consensus 210 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (479)
+|++|+.||.|++||+.++. .+..+.+|...|.+++|+
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~-- 185 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQT----------------------------------------KLRTMAGHQARVGCLSWN-- 185 (401)
T ss_dssp EEEEEETTSCEEEEETTTCC----------------------------------------EEEEECCCSSCEEEEEEE--
T ss_pred EEEEECCCCeEEEEECcCCe----------------------------------------EEEEecCCCCceEEEEEC--
Confidence 99999999999999996532 235677899999999994
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec
Q 011709 290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
+ .++++++.||.|++||++.... ....+.+|...|.+++|+| ++.+|++|+.||.|++||++. +.++..+.
T Consensus 186 ~-~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~ 256 (401)
T 4aez_A 186 R-HVLSSGSRSGAIHHHDVRIANH-QIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARS------SIPKFTKT 256 (401)
T ss_dssp T-TEEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTC------SSEEEEEC
T ss_pred C-CEEEEEcCCCCEEEEecccCcc-eeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCC------CCccEEec
Confidence 3 5899999999999999996443 5667779999999999999 999999999999999999998 78888999
Q ss_pred CCCCcEEEEEEecCCCcEEEEEe--CCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeee-
Q 011709 370 GHSAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVD- 446 (479)
Q Consensus 370 ~h~~~v~~l~~~p~~~~llas~s--~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~- 446 (479)
.|...|.+++|+|++..++++++ .|+.|++||+..+ ..+.....+..+.+++|+|++..+++
T Consensus 257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---------------~~~~~~~~~~~v~~~~~s~~~~~l~~~ 321 (401)
T 4aez_A 257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---------------ARVNTVDAGSQVTSLIWSPHSKEIMST 321 (401)
T ss_dssp CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---------------CEEEEEECSSCEEEEEECSSSSEEEEE
T ss_pred CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---------------CEEEEEeCCCcEEEEEECCCCCeEEEE
Confidence 99999999999999988888876 7999999999874 22333445566999999999999998
Q ss_pred -cCCCccccceeEEEEeecc
Q 011709 447 -NNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 447 -~~~~~~~~d~~i~i~~~~~ 465 (479)
|+. +|.|++|+...
T Consensus 322 ~g~~-----dg~i~v~~~~~ 336 (401)
T 4aez_A 322 HGFP-----DNNLSIWSYSS 336 (401)
T ss_dssp ECTT-----TCEEEEEEEET
T ss_pred eecC-----CCcEEEEecCC
Confidence 446 89999998765
No 78
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.8e-31 Score=263.98 Aligned_cols=264 Identities=19% Similarity=0.329 Sum_probs=206.7
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeec--CCCCcE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC--PTEPYV 211 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s--~~~~~l 211 (479)
....+|.+.|.+++|+| ++ +|++|+.||+|++||+.++ .....+.+|.. .|.+++|+ +++.+|
T Consensus 156 ~~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~l~~~~~~~~~~l 220 (464)
T 3v7d_B 156 LQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKG------------CCTHVFEGHNS-TVRCLDIVEYKNIKYI 220 (464)
T ss_dssp EEECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEEEESSSCEEE
T ss_pred EEEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCC------------cEEEEECCCCC-ccEEEEEecCCCCCEE
Confidence 34457999999999998 44 9999999999999999987 56678888987 58999998 567899
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
++|+.||+|++||+.+.......... ......... ..........+.+|...|.++ ++++
T Consensus 221 ~s~s~d~~i~vwd~~~~~~~~~~~~~------~~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~--~~~~- 280 (464)
T 3v7d_B 221 VTGSRDNTLHVWKLPKESSVPDHGEE------HDYPLVFHT-----------PEENPYFVGVLRGHMASVRTV--SGHG- 280 (464)
T ss_dssp EEEETTSCEEEEECCCCCCC------------CCSSEEESC-----------GGGCTTEEEEECCCSSCEEEE--EEET-
T ss_pred EEEcCCCcEEEeeCCCCccccccccc------CCcceEeec-----------cCCCeEEEEEccCccceEEEE--cCCC-
Confidence 99999999999999865432211100 000000000 001111245678899999887 4556
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
.++++++.||.|++||+++++ .+..+.+|...|.+++|+| ++.+|++|+.||.|++||+++ ++++..+.+|
T Consensus 281 ~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~------~~~~~~~~~h 351 (464)
T 3v7d_B 281 NIVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN------GELMYTLQGH 351 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT------TEEEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CcEEEEEeCC
Confidence 689999999999999999887 6778889999999999999 999999999999999999998 7899999999
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCc
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGL 451 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~ 451 (479)
...|.+++|++ . .|++++.||.|++||+... ...+.......+..++|+|++.+++++++
T Consensus 352 ~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~d-- 411 (464)
T 3v7d_B 352 TALVGLLRLSD--K-FLVSAAADGSIRGWDANDY---------------SRKFSYHHTNLSAITTFYVSDNILVSGSE-- 411 (464)
T ss_dssp SSCEEEEEECS--S-EEEEEETTSEEEEEETTTC---------------CEEEEEECTTCCCEEEEEECSSEEEEEET--
T ss_pred CCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCC---------------ceeeeecCCCCccEEEEEeCCCEEEEecC--
Confidence 99999999984 4 5789999999999999873 12222222334678899999999988764
Q ss_pred cccceeEEEEeecc
Q 011709 452 SYANKKIKIYCHLE 465 (479)
Q Consensus 452 ~~~d~~i~i~~~~~ 465 (479)
|.|++|+...
T Consensus 412 ----g~i~iwd~~~ 421 (464)
T 3v7d_B 412 ----NQFNIYNLRS 421 (464)
T ss_dssp ----TEEEEEETTT
T ss_pred ----CeEEEEECCC
Confidence 6999998654
No 79
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=254.81 Aligned_cols=255 Identities=12% Similarity=0.206 Sum_probs=199.4
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeC---CCcEEEEECCCCCCccccCCCCCCCCc-EEEeccCCCceeeeeecCC-
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPD-LILTGHQDNAEFALAMCPT- 207 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~h~~~~v~~l~~s~~- 207 (479)
.....+|.+.|++++|+|++..++++|+. ||.|+|||+.++ ... ....+|.. .|.+++|+|+
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~------------~~~~~~~~~~~~-~v~~~~~~~~~ 77 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG------------DLKLLREIEKAK-PIKCGTFGATS 77 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS------------SEEEEEEEEESS-CEEEEECTTCC
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC------------cccceeeecccC-cEEEEEEcCCC
Confidence 33445799999999999966677888887 999999999876 222 22336765 5999999999
Q ss_pred --CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEE
Q 011709 208 --EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (479)
Q Consensus 208 --~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (479)
+.+|++|+.||.|++||+.+... ++..+.+|...|.++.
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------------------~~~~~~~~~~~v~~~~ 118 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEM---------------------------------------PVYSVKGHKEIINAID 118 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSS---------------------------------------CSEEECCCSSCEEEEE
T ss_pred CCCceEEEecCCCeEEEEeCCCCCc---------------------------------------cEEEEEecccceEEEe
Confidence 69999999999999999975431 2366778999999996
Q ss_pred E------eeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCC----CeEEEE----ecCCCCcEEEEEeCCCcEEEE
Q 011709 286 F------CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA----DLHCVD----WNPLDDNLILTGSADNSVRMF 351 (479)
Q Consensus 286 ~------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~~l~----~sp~~~~~l~tgs~dg~I~iw 351 (479)
| +|++ .+|++++.||.|++||++++..+ ...+..|.. .+.+++ |+| ++.+|++|+.||.|++|
T Consensus 119 ~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 119 GIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDP-VANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLF 195 (357)
T ss_dssp EESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSC-SEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEE
T ss_pred eccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCc-ceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEE
Confidence 5 5677 68999999999999999987632 344444443 899998 788 89999999999999999
Q ss_pred ecCCCCCCCCCCceeeecCCCCcEEEEEEec---CCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC
Q 011709 352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (479)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p---~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g 428 (479)
|++. +.. .....|...|.+++|+| ++. .|++++.||.|++||++.. ..... .......+
T Consensus 196 d~~~------~~~-~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~---------~~~~~~~~ 257 (357)
T 3i2n_A 196 DLRN------MAL-RWETNIKNGVCSLEFDRKDISMN-KLVATSLEGKFHVFDMRTQ-HPTKG---------FASVSEKA 257 (357)
T ss_dssp ETTT------TEE-EEEEECSSCEEEEEESCSSSSCC-EEEEEESTTEEEEEEEEEE-ETTTE---------EEEEEEEC
T ss_pred ECcc------Cce-eeecCCCCceEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcCC-Ccccc---------eeeeccCC
Confidence 9998 444 44466889999999999 777 4779999999999999873 11100 11123446
Q ss_pred CCC-ceeEEEecCCC-eeeecCCCccccceeEEEEeecc
Q 011709 429 HSP-SSSIKFVLRES-CLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 429 h~~-~~~~~~sp~~~-~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
|.. +.+++|+|++. +|++++. ||.|++|+...
T Consensus 258 ~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~ 291 (357)
T 3i2n_A 258 HKSTVWQVRHLPQNRELFLTAGG-----AGGLHLWKYEY 291 (357)
T ss_dssp CSSCEEEEEEETTEEEEEEEEET-----TSEEEEEEEEC
T ss_pred CcCCEEEEEECCCCCcEEEEEeC-----CCcEEEeecCC
Confidence 665 89999999998 7888888 99999998763
No 80
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.8e-32 Score=286.33 Aligned_cols=250 Identities=20% Similarity=0.284 Sum_probs=215.9
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.....+|.+.|.+++|+| ++.+||+|+.||.|+|||+.++ .....+.+|.. .|.+++|+|++++|+
T Consensus 6 ~~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~l~ 71 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQ------------VEVRSIQVTET-PVRAGKFIARKNWII 71 (814)
T ss_dssp EEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEEEGGGTEEE
T ss_pred ceeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCC------------ceEEEEecCCC-cEEEEEEeCCCCEEE
Confidence 345568999999999999 8889999999999999999887 56678889987 599999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+|+.||.|++||+.++. .+..+.+|...|.+++|+|++ .
T Consensus 72 ~~~~dg~i~vw~~~~~~----------------------------------------~~~~~~~~~~~v~~~~~s~~~-~ 110 (814)
T 3mkq_A 72 VGSDDFRIRVFNYNTGE----------------------------------------KVVDFEAHPDYIRSIAVHPTK-P 110 (814)
T ss_dssp EEETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS-S
T ss_pred EEeCCCeEEEEECCCCc----------------------------------------EEEEEecCCCCEEEEEEeCCC-C
Confidence 99999999999997543 235677899999999999999 6
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
++++++.||.|++||++++.. ....+.+|...|.+++|+|.++.+|++|+.||.|++||++. +.+...+..|.
T Consensus 111 ~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~ 183 (814)
T 3mkq_A 111 YVLSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------STPNFTLTTGQ 183 (814)
T ss_dssp EEEEEETTSEEEEEEGGGTSE-EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC------SSCSEEEECCC
T ss_pred EEEEEcCCCEEEEEECCCCce-EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CcceeEEecCC
Confidence 899999999999999988642 56677789999999999996688999999999999999987 55666665554
Q ss_pred -CcEEEEEEec--CCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecC
Q 011709 373 -AAVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNN 448 (479)
Q Consensus 373 -~~v~~l~~~p--~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~ 448 (479)
..+.+++|+| ++. +|++++.||.|++||+..+ ..+....+|.. +.+++|+|++.+|++++
T Consensus 184 ~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 184 ERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTK---------------SCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp TTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTT---------------EEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred CCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 8999999999 888 5789999999999999873 33455566765 89999999999999999
Q ss_pred CCccccceeEEEEeecc
Q 011709 449 HGLSYANKKIKIYCHLE 465 (479)
Q Consensus 449 ~~~~~~d~~i~i~~~~~ 465 (479)
. ||.|++|+...
T Consensus 248 ~-----dg~v~vwd~~~ 259 (814)
T 3mkq_A 248 E-----DGTLKIWNSST 259 (814)
T ss_dssp T-----TSCEEEEETTT
T ss_pred C-----CCeEEEEECCC
Confidence 9 99999998654
No 81
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.1e-31 Score=263.41 Aligned_cols=281 Identities=21% Similarity=0.352 Sum_probs=218.6
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
.+|...|.++.+ ++.+|++|+.||+|++||+.++ +....+.+|.. .|.+++| ++++|++|+.
T Consensus 130 ~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~------------~~~~~~~~h~~-~v~~l~~--~~~~l~sg~~ 191 (435)
T 1p22_A 130 SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTL------------ECKRILTGHTG-SVLCLQY--DERVIITGSS 191 (435)
T ss_dssp CSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSC------------CEEEEECCCSS-CEEEEEC--CSSEEEEEET
T ss_pred cCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCC------------eEEEEEcCCCC-cEEEEEE--CCCEEEEEcC
Confidence 457778999987 6789999999999999999887 56778889997 5899999 7889999999
Q ss_pred CCcEEEEecCCCccccccCCcc--cccCCCCCceeecCCCCCCCCCCCCCCCCCCCc---eeecCCCCceEEEEEeeCCC
Q 011709 217 DKSVVLWSIQDHITSSATDPAT--AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR---GIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~l~~~~~~~ 291 (479)
||+|++||+.++.......... ..........+ .....++.+.+|+....... ..+.+|...|.+++| ++
T Consensus 192 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l--~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~- 266 (435)
T 1p22_A 192 DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMM--VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD- 266 (435)
T ss_dssp TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEE--EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET-
T ss_pred CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEE--EEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC-
Confidence 9999999998875432222110 00000011111 11235677888888777665 677889999999999 34
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
.++++++.||.|++||+++++ .+..+.+|...|.+++|+ +.+|++|+.||.|++||+++ +.++..+.+|
T Consensus 267 ~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~------~~~~~~~~~h 335 (435)
T 1p22_A 267 KYIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIEC------GACLRVLEGH 335 (435)
T ss_dssp TEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTT------CCEEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCcCc--EEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCC------CCEEEEEeCC
Confidence 689999999999999999988 778888999999999995 47999999999999999998 7899999999
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~ 450 (479)
...|.+++| ++. .|++|+.||.|++||+......... .....+....+|.. +.+++| ++..|++++.
T Consensus 336 ~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~------~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~- 403 (435)
T 1p22_A 336 EELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAALDPRAP------AGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH- 403 (435)
T ss_dssp SSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHTSTTSC------TTTTEEEEECCCSSCCCCEEE--CSSCEEECCS-
T ss_pred cCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCCCcccc------ccchheeeccCCCCCeEEEEe--CCCEEEEEeC-
Confidence 999999999 455 5789999999999999764221111 11124556677876 899999 7889999999
Q ss_pred ccccceeEEEEeecccc
Q 011709 451 LSYANKKIKIYCHLEAL 467 (479)
Q Consensus 451 ~~~~d~~i~i~~~~~~~ 467 (479)
||.|++|+....-
T Consensus 404 ----Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 404 ----DDTILIWDFLNDP 416 (435)
T ss_dssp ----SSEEEEEC-----
T ss_pred ----CCEEEEEECCCCC
Confidence 9999999876543
No 82
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=261.98 Aligned_cols=328 Identities=15% Similarity=0.187 Sum_probs=218.2
Q ss_pred cceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCC----
Q 011709 65 WPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHP---- 140 (479)
Q Consensus 65 wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---- 140 (479)
-+..++.|.|+- ..|.. |+.+..+.||++...... ...............+|.
T Consensus 29 ~~V~~v~~s~~g--------~~la~-----g~~dg~v~iw~~~~~~~~----------~~~~~~~~~~~~~~~~h~~~~~ 85 (447)
T 3dw8_B 29 DIISTVEFNHSG--------ELLAT-----GDKGGRVVIFQQEQENKI----------QSHSRGEYNVYSTFQSHEPEFD 85 (447)
T ss_dssp GSEEEEEECSSS--------SEEEE-----EETTSEEEEEEECC---------------CCCCCCEEEEEEEECCCCEEE
T ss_pred CcEEEEEECCCC--------CEEEE-----EcCCCeEEEEEecCCCCC----------CcccccceeEeccccccccccc
Confidence 367789998852 23332 336788999987632210 000001111233445787
Q ss_pred --------CceeEEEecCCCC-cEEEEEeCCCcEEEEECCCCCCccccCC-------------CCCC-------------
Q 011709 141 --------GEVNRIRELPQNT-KIVATHTDSPDVLIWDVEAQPNRHAVLG-------------ATNS------------- 185 (479)
Q Consensus 141 --------~~V~~l~~~p~~~-~~lat~s~dg~i~iwd~~~~~~~~~~~~-------------~~~~------------- 185 (479)
+.|++++|+|+.. .+|++++.||+|++||+.+......... ....
T Consensus 86 ~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 165 (447)
T 3dw8_B 86 YLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE 165 (447)
T ss_dssp GGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE
T ss_pred ccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee
Confidence 8899999999432 7999999999999999976422100000 0000
Q ss_pred -CCcEE-EeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCC
Q 011709 186 -RPDLI-LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA 263 (479)
Q Consensus 186 -~~~~~-~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (479)
.+... ..+|.. .|++++|+|++++|++| .||.|++||+...........
T Consensus 166 ~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~--------------------------- 216 (447)
T 3dw8_B 166 ASPRRIFANAHTY-HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVD--------------------------- 216 (447)
T ss_dssp EEEEEEECSCCSS-CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEE---------------------------
T ss_pred ccceEEeccCCCc-ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeee---------------------------
Confidence 01112 357886 58999999999999999 799999999974221100000
Q ss_pred CCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCC--ceeeeccCCC------------CeEEE
Q 011709 264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDA------------DLHCV 329 (479)
Q Consensus 264 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~------------~v~~l 329 (479)
.. ...+.+|...|.+++|+|++..+|++++.||.|++||++++... ....+..|.. .|.++
T Consensus 217 ----~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 291 (447)
T 3dw8_B 217 ----IK-PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDV 291 (447)
T ss_dssp ----CC-CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEE
T ss_pred ----cc-cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEE
Confidence 00 02356799999999999998678999999999999999987720 1466667765 89999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCc---------------EEEEEEecCCCcEEEEEeCC
Q 011709 330 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA---------------VLCVQWSPDKSSVFGSSAED 394 (479)
Q Consensus 330 ~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~---------------v~~l~~~p~~~~llas~s~D 394 (479)
+|+| ++.+|++++. |.|++||++.. +.++..+.+|... +..++|+|++.+ |++|+.|
T Consensus 292 ~~s~-~g~~l~~~~~-~~v~iwd~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~d 363 (447)
T 3dw8_B 292 KFSH-SGRYMMTRDY-LSVKVWDLNME-----NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYN 363 (447)
T ss_dssp EECT-TSSEEEEEES-SEEEEEETTCC-----SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-EEEECST
T ss_pred EECC-CCCEEEEeeC-CeEEEEeCCCC-----ccccceeeccccccccccccccccccccceEEEECCCCCE-EEEeccC
Confidence 9999 9999999999 99999999862 4677888888642 334999999995 6899999
Q ss_pred CCEEEEeCCCCCccccCCCCCC-----CCCCe------------eEE-EeCCCCCceeEEEecCCCeeeecCCCccccce
Q 011709 395 GLLNIWDYEKVGKKVEQGPRTT-----NYPAG------------LFF-QHAGHSPSSSIKFVLRESCLVDNNHGLSYANK 456 (479)
Q Consensus 395 g~v~iwd~~~~~~~~~~~~~~~-----~~~~~------------l~~-~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~ 456 (479)
|.|+|||+..+........... ..++. ... ...-...+..++|+|++..|++++. +
T Consensus 364 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-----~- 437 (447)
T 3dw8_B 364 NFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATT-----N- 437 (447)
T ss_dssp TEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS-----S-
T ss_pred CEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEec-----c-
Confidence 9999999998432211111000 00000 000 0111233789999999999998887 3
Q ss_pred eEEEEee
Q 011709 457 KIKIYCH 463 (479)
Q Consensus 457 ~i~i~~~ 463 (479)
.+.+|..
T Consensus 438 ~~~~~~~ 444 (447)
T 3dw8_B 438 NLYIFQD 444 (447)
T ss_dssp CEEEEEC
T ss_pred eeeeecc
Confidence 4777743
No 83
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.9e-32 Score=255.66 Aligned_cols=250 Identities=12% Similarity=0.138 Sum_probs=200.8
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGK 216 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~ 216 (479)
+|.+.|++++|+| ++.+|++++.||.|+|||+.+... ......+.+|.. .|++++|+|+++ +|++|+.
T Consensus 9 ~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~---------~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~ 77 (342)
T 1yfq_A 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAK---------NVDLLQSLRYKH-PLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTT---------EEEEEEEEECSS-CEEEEEEEESSSEEEEEEET
T ss_pred CCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCc---------cccceeeeecCC-ceEEEEECCCCCcEEEEEcC
Confidence 7999999999999 888999999999999999987621 112345668886 599999999999 9999999
Q ss_pred CCcEEEEec-CCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC--CCCceEEEEEeeCCCcE
Q 011709 217 DKSVVLWSI-QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG--HEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 217 dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~ 293 (479)
||.|++||+ .+... ..+.+ |...|.+++|+| + .+
T Consensus 78 dg~i~~wd~~~~~~~-----------------------------------------~~~~~~~~~~~v~~l~~~~-~-~~ 114 (342)
T 1yfq_A 78 QGEILKVDLIGSPSF-----------------------------------------QALTNNEANLGICRICKYG-D-DK 114 (342)
T ss_dssp TSCEEEECSSSSSSE-----------------------------------------EECBSCCCCSCEEEEEEET-T-TE
T ss_pred CCeEEEEEeccCCce-----------------------------------------EeccccCCCCceEEEEeCC-C-CE
Confidence 999999999 65322 45666 999999999999 6 78
Q ss_pred EEEEecCCeEEEEeCCC---------CCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCC-CCCCCCCC
Q 011709 294 FCSVGDDSCLILWDARV---------GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN-LTSNGVGS 363 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~-~~~~~~~~ 363 (479)
|++++.|+.|++||+++ ++ .+..+. |...|.+++|+| ++ +++++.||.|++||++. .. ..
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~-~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~----~~ 184 (342)
T 1yfq_A 115 LIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTK-VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCED----DN 184 (342)
T ss_dssp EEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSS-SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTT----CC
T ss_pred EEEEcCCCeEEEEcccccccccccccCC--eeeEEe-eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCcccc----cc
Confidence 99999999999999987 55 344443 889999999998 55 99999999999999987 43 12
Q ss_pred ceeeecCCCCcEEEEEEec-CCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC---------C-Cc
Q 011709 364 PINKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH---------S-PS 432 (479)
Q Consensus 364 ~~~~~~~h~~~v~~l~~~p-~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh---------~-~~ 432 (479)
.......|...|.+++|+| ++. +|++++.||.|+|||+...+.... ........+| . .+
T Consensus 185 ~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i 254 (342)
T 1yfq_A 185 GTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDYN---------SSKRFAFRCHRLNLKDTNLAYPV 254 (342)
T ss_dssp CEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCCSTT---------CTTCEEEECCCCCTTCCSSCCCE
T ss_pred ceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCcccc---------cccceeeecccccccccccceeE
Confidence 3344567888999999999 988 578999999999999987411000 0112223333 2 58
Q ss_pred eeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 433 SSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 433 ~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
.+++|+|++.+|++++. ||.|++|+....
T Consensus 255 ~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~ 283 (342)
T 1yfq_A 255 NSIEFSPRHKFLYTAGS-----DGIISCWNLQTR 283 (342)
T ss_dssp EEEEECTTTCCEEEEET-----TSCEEEEETTTT
T ss_pred EEEEEcCCCCEEEEecC-----CceEEEEcCccH
Confidence 99999999999999998 999999987643
No 84
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-30 Score=258.31 Aligned_cols=246 Identities=20% Similarity=0.352 Sum_probs=208.0
Q ss_pred eEEEecCCCce-eEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 133 KHKTIIHPGEV-NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 133 ~~~~~~h~~~V-~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
.....+|.+.| .++.+ ++++|++|+.||+|++||+.++ +....+.+|.+ .|++++|+|++ .|
T Consensus 114 ~~~l~~h~~~v~~~~~~---~~~~l~sgs~dg~i~vwd~~~~------------~~~~~~~~h~~-~V~~l~~~~~~-~l 176 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINK------------KFLLQLSGHDG-GVWALKYAHGG-IL 176 (464)
T ss_dssp EEEEECCSSSCEEEEEE---ETTEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECSTT-EE
T ss_pred eEEEcCCCCCcEEEEEE---CCCEEEEEcCCCcEEEEECCCC------------cEEEEEeCCCc-CEEEEEEcCCC-EE
Confidence 44566898885 66666 4569999999999999999887 66778889997 59999999988 89
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee--C
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP--S 289 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~ 289 (479)
++|+.||+|++||+.++.. +..+.+|...|.+++|++ +
T Consensus 177 ~s~s~dg~i~vwd~~~~~~----------------------------------------~~~~~~h~~~v~~l~~~~~~~ 216 (464)
T 3v7d_B 177 VSGSTDRTVRVWDIKKGCC----------------------------------------THVFEGHNSTVRCLDIVEYKN 216 (464)
T ss_dssp EEEETTSCEEEEETTTTEE----------------------------------------EEEECCCSSCEEEEEEEESSS
T ss_pred EEEeCCCCEEEEECCCCcE----------------------------------------EEEECCCCCccEEEEEecCCC
Confidence 9999999999999975432 356778999999999996 4
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCCC---------------------ceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcE
Q 011709 290 SAQEFCSVGDDSCLILWDARVGTSP---------------------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV 348 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~---------------------~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I 348 (479)
+ .++++++.||.|++||+++.... ....+.+|...|.++. + ++.+|++|+.||.|
T Consensus 217 ~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i 292 (464)
T 3v7d_B 217 I-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTL 292 (464)
T ss_dssp C-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCE
T ss_pred C-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeE
Confidence 4 78999999999999999986521 1445678889998884 5 67999999999999
Q ss_pred EEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC
Q 011709 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (479)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g 428 (479)
++||+++ ++++..+.+|...|.+++|+|+++. |++|+.||.|++||++++ +.+....+
T Consensus 293 ~vwd~~~------~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~vwd~~~~---------------~~~~~~~~ 350 (464)
T 3v7d_B 293 IVWDVAQ------MKCLYILSGHTDRIYSTIYDHERKR-CISASMDTTIRIWDLENG---------------ELMYTLQG 350 (464)
T ss_dssp EEEETTT------TEEEEEECCCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTT---------------EEEEEECC
T ss_pred EEEECCC------CcEEEEecCCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC---------------cEEEEEeC
Confidence 9999998 7889999999999999999999995 789999999999999874 45666777
Q ss_pred CCC-ceeEEEecCCCeeeecCCCccccceeEEEEeeccccc
Q 011709 429 HSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEALK 468 (479)
Q Consensus 429 h~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~~~ 468 (479)
|.. +.+++|+ +.+|++++. ||.|++|+......
T Consensus 351 h~~~v~~~~~~--~~~l~s~s~-----dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 351 HTALVGLLRLS--DKFLVSAAA-----DGSIRGWDANDYSR 384 (464)
T ss_dssp CSSCEEEEEEC--SSEEEEEET-----TSEEEEEETTTCCE
T ss_pred CCCcEEEEEEc--CCEEEEEeC-----CCcEEEEECCCCce
Confidence 877 8889997 579999999 99999998776543
No 85
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-31 Score=274.88 Aligned_cols=281 Identities=12% Similarity=0.135 Sum_probs=200.3
Q ss_pred EEEecCCC---ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEE-e---ccCCCceeeeeecC
Q 011709 134 HKTIIHPG---EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-T---GHQDNAEFALAMCP 206 (479)
Q Consensus 134 ~~~~~h~~---~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~~v~~l~~s~ 206 (479)
.....|.+ .|.+++|+|+++++|++++.||.|++||+.++ +....+ . +|.. .|.+++|+
T Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~~-~v~~~~~~- 262 (615)
T 1pgu_A 197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG------------EFLKYIEDDQEPVQG-GIFALSWL- 262 (615)
T ss_dssp EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC------------CEEEECCBTTBCCCS-CEEEEEES-
T ss_pred eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC------------CEeEEecccccccCC-ceEEEEEc-
Confidence 34456888 99999999943899999999999999999887 455556 4 7776 58999999
Q ss_pred CCCcEEEecCCCcEEEEecCCCccccccCCcc--------cccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee----
Q 011709 207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPAT--------AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY---- 274 (479)
Q Consensus 207 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 274 (479)
++.+|++++.||.|++||+.++.......... ..... ....+.. ...++.+.+|+.....++..+
T Consensus 263 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~--~~~~g~i~~~d~~~~~~~~~~~~~~ 339 (615)
T 1pgu_A 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIIS--LSLDGTLNFYELGHDEVLKTISGHN 339 (615)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEE--EETTSCEEEEETTEEEEEEEECCCS
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEE--EECCCCEEEEECCCCcEEEEEeCCC
Confidence 99999999999999999998764322211110 00000 0000000 011122222222222222222
Q ss_pred -----------------------------cCCC-----------------------------------------------
Q 011709 275 -----------------------------NGHE----------------------------------------------- 278 (479)
Q Consensus 275 -----------------------------~~h~----------------------------------------------- 278 (479)
.+|.
T Consensus 340 ~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~ 419 (615)
T 1pgu_A 340 KGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF 419 (615)
T ss_dssp SCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSE
T ss_pred CCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCC
Confidence 2222
Q ss_pred ---------------------------CceEEEEEeeCCCcEEEEEec-CCeEEEEeCCCCCCCce-eeeccCCCCeEEE
Q 011709 279 ---------------------------DTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVI-KVEKAHDADLHCV 329 (479)
Q Consensus 279 ---------------------------~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~l 329 (479)
..+.+++|+ + .++++++. ||.|++||+.++. .. ..+..|...|+++
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~d~~i~~~~~~~~~--~~~~~~~~~~~~v~~~ 494 (615)
T 1pgu_A 420 TAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--Q-NYVAVGLEEGNTIQVFKLSDLE--VSFDLKTPLRAKPSYI 494 (615)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--S-SEEEEEETTTSCEEEEETTEEE--EEEECSSCCSSCEEEE
T ss_pred EEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--C-CEEEEeecCCCeEEEEECCCcc--ccccccCCccCceEEE
Confidence 333444443 2 34555555 6666666665544 22 4556799999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC-CCCcEEEEEEec----------CCCcEEEEEeCCCCEE
Q 011709 330 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-HSAAVLCVQWSP----------DKSSVFGSSAEDGLLN 398 (479)
Q Consensus 330 ~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p----------~~~~llas~s~Dg~v~ 398 (479)
+|+| ++.+|++|+.||.|++||+++ ++++..+.+ |...|++++|+| +++ +||+++.||.|+
T Consensus 495 ~~s~-~g~~l~~~~~dg~i~iw~~~~------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~-~l~~~~~dg~i~ 566 (615)
T 1pgu_A 495 SISP-SETYIAAGDVMGKILLYDLQS------REVKTSRWAFRTSKINAISWKPAEKGANEEEIEED-LVATGSLDTNIF 566 (615)
T ss_dssp EECT-TSSEEEEEETTSCEEEEETTT------TEEEECCSCCCSSCEEEEEECCCC------CCSCC-EEEEEETTSCEE
T ss_pred EECC-CCCEEEEcCCCCeEEEeeCCC------CcceeEeecCCCCceeEEEEcCccccccccccCCC-EEEEEcCCCcEE
Confidence 9999 999999999999999999998 788888888 999999999999 888 578999999999
Q ss_pred EEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 399 IWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 399 iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
|||+.... ..+....+|.. +.+++|+|++. |++++. ||.|++|+..
T Consensus 567 iw~~~~~~--------------~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~-----d~~v~iw~~~ 613 (615)
T 1pgu_A 567 IYSVKRPM--------------KIIKALNAHKDGVNNLLWETPST-LVSSGA-----DACIKRWNVV 613 (615)
T ss_dssp EEESSCTT--------------CCEEETTSSTTCEEEEEEEETTE-EEEEET-----TSCEEEEEEC
T ss_pred EEECCCCc--------------eechhhhcCccceEEEEEcCCCC-eEEecC-----CceEEEEeee
Confidence 99998742 23445677866 99999999999 999999 9999999864
No 86
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.1e-31 Score=291.51 Aligned_cols=255 Identities=17% Similarity=0.297 Sum_probs=216.3
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.....+|.+.|++++|+| ++.+||+|+.||+|+|||+.++ .....+.+|.. .|.+++|+|++++|+
T Consensus 608 ~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~------------~~~~~~~~h~~-~v~~~~~s~~~~~l~ 673 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETG------------EKLLDIKAHED-EVLCCAFSSDDSYIA 673 (1249)
T ss_dssp SEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTTSSEEE
T ss_pred eEEEecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCC------------CEEEEeccCCC-CEEEEEEecCCCEEE
Confidence 445668999999999999 8889999999999999999987 56778889997 599999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC-C
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-A 291 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~ 291 (479)
+|+.||+|++||+.++. .+..+.+|...|.+++|+|++ .
T Consensus 674 s~~~d~~v~vwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~ 713 (1249)
T 3sfz_A 674 TCSADKKVKIWDSATGK----------------------------------------LVHTYDEHSEQVNCCHFTNKSNH 713 (1249)
T ss_dssp EEETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSSSC
T ss_pred EEeCCCeEEEEECCCCc----------------------------------------eEEEEcCCCCcEEEEEEecCCCc
Confidence 99999999999997542 236678899999999999953 2
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCC------------
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------------ 359 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~------------ 359 (479)
.++++++.||.|++||++++. ....+.+|...|++++|+| ++.+|++|+.||.|++||++.....
T Consensus 714 ~~l~sg~~d~~v~vwd~~~~~--~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 790 (1249)
T 3sfz_A 714 LLLATGSNDFFLKLWDLNQKE--CRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 790 (1249)
T ss_dssp CEEEEEETTSCEEEEETTSSS--EEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred eEEEEEeCCCeEEEEECCCcc--hhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceeccccccccc
Confidence 589999999999999999988 6778889999999999999 9999999999999999998763100
Q ss_pred ------------------------------------CCCCceeee-cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeC
Q 011709 360 ------------------------------------GVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 402 (479)
Q Consensus 360 ------------------------------------~~~~~~~~~-~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~ 402 (479)
..+..+..+ .+|...|.+++|+|++. ++++++.||.|++||+
T Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~ 869 (1249)
T 3sfz_A 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNI 869 (1249)
T ss_dssp -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEET
T ss_pred CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEc
Confidence 000111111 27888999999999998 5779999999999999
Q ss_pred CCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 403 EKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
... ..+....+|.. +.+++|+|++..|++++. ||.|++|+...
T Consensus 870 ~~~---------------~~~~~~~~h~~~v~~v~~spdg~~l~s~s~-----dg~v~vw~~~~ 913 (1249)
T 3sfz_A 870 DSR---------------LKVADCRGHLSWVHGVMFSPDGSSFLTASD-----DQTIRVWETKK 913 (1249)
T ss_dssp TTT---------------EEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEEHHH
T ss_pred CCC---------------ceeeecCCCccceEEEEECCCCCEEEEEeC-----CCeEEEEEccc
Confidence 873 44566778877 999999999999999999 99999998653
No 87
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.6e-31 Score=261.43 Aligned_cols=278 Identities=19% Similarity=0.311 Sum_probs=217.9
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
....+|.+.|.++.|+ +++|++|+.||+|++||+.++ .....+.+|.. .|.+++|+ ++.|++
T Consensus 153 ~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~--~~~l~s 214 (445)
T 2ovr_B 153 RTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETG------------ECIHTLYGHTS-TVRCMHLH--EKRVVS 214 (445)
T ss_dssp EECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEEE--TTEEEE
T ss_pred EEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcC------------cEEEEECCCCC-cEEEEEec--CCEEEE
Confidence 3445899999999996 459999999999999999887 56677889987 58999996 567999
Q ss_pred ecCCCcEEEEecCCCccccccCCc--ccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPA--TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
|+.||+|++||+.++......... ...........+. ....++.+.+|+......+..+.+|...|.++.| ++
T Consensus 215 ~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~- 289 (445)
T 2ovr_B 215 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG- 289 (445)
T ss_dssp EETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEE--EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS-
T ss_pred EeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEE--EEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC-
Confidence 999999999999876543221110 0000000111111 1234677888988888888999999999999999 45
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC-
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG- 370 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~- 370 (479)
.++++++.||.|++||+++++ .+..+.+|...+.++.++ +++|++|+.||.|++||+++ ++++..+.+
T Consensus 290 ~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~ 358 (445)
T 2ovr_B 290 IHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKT------GQCLQTLQGP 358 (445)
T ss_dssp SEEEEEETTSCEEEEETTTCC--EEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTT------CCEEEEECST
T ss_pred CEEEEEeCCCeEEEEECCCCC--EEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCC------CcEEEEEccC
Confidence 689999999999999999988 677888999999999885 47999999999999999988 778888876
Q ss_pred --CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEe--CCCCC-ceeEEEecCCCeee
Q 011709 371 --HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH--AGHSP-SSSIKFVLRESCLV 445 (479)
Q Consensus 371 --h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~--~gh~~-~~~~~~sp~~~~l~ 445 (479)
|...|++++|++ . +|++++.||.|++||+..+ ... ..+... .+|.. +.+++|+|++.+++
T Consensus 359 ~~~~~~v~~~~~~~--~-~l~s~~~dg~v~iwd~~~~-~~~-----------~~~~~~~~~~~~~~v~~~~~s~~~~~la 423 (445)
T 2ovr_B 359 NKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLKTG-EFI-----------RNLVTLESGGSGGVVWRIRASNTKLVCA 423 (445)
T ss_dssp TSCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTC-CEE-----------EEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred CCCCCCEEEEEECC--C-EEEEEeCCCeEEEEECCCC-cee-----------eeeeccccCCCCceEEEEEecCCEEEEE
Confidence 889999999964 4 6789999999999999884 111 111111 34554 89999999999999
Q ss_pred ecCCCcccccee----EEEEeecc
Q 011709 446 DNNHGLSYANKK----IKIYCHLE 465 (479)
Q Consensus 446 ~~~~~~~~~d~~----i~i~~~~~ 465 (479)
+++. ||. |.+|+...
T Consensus 424 ~~~~-----dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 424 VGSR-----NGTEETKLLVLDFDV 442 (445)
T ss_dssp EECS-----SSSSCCEEEEEECCC
T ss_pred Eccc-----CCCCccEEEEEECCC
Confidence 9998 786 88887654
No 88
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.2e-30 Score=243.37 Aligned_cols=287 Identities=11% Similarity=0.051 Sum_probs=217.7
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|+- ..|+.+ ..+..+.||++.... +.........|.+.|++
T Consensus 13 ~v~~~~~s~~~--------~~l~~~-----~~d~~v~iw~~~~~~------------------~~~~~~~~~~~~~~v~~ 61 (342)
T 1yfq_A 13 YISDIKIIPSK--------SLLLIT-----SWDGSLTVYKFDIQA------------------KNVDLLQSLRYKHPLLC 61 (342)
T ss_dssp CEEEEEEEGGG--------TEEEEE-----ETTSEEEEEEEETTT------------------TEEEEEEEEECSSCEEE
T ss_pred cEEEEEEcCCC--------CEEEEE-----cCCCeEEEEEeCCCC------------------ccccceeeeecCCceEE
Confidence 56788888851 234333 257889999875321 11123445689999999
Q ss_pred EEecCCCCc-EEEEEeCCCcEEEEEC-CCCCCccccCCCCCCCCcEEEec--cCCCceeeeeecCCCCcEEEecCCCcEE
Q 011709 146 IRELPQNTK-IVATHTDSPDVLIWDV-EAQPNRHAVLGATNSRPDLILTG--HQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (479)
Q Consensus 146 l~~~p~~~~-~lat~s~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~--h~~~~v~~l~~s~~~~~l~s~s~dg~i~ 221 (479)
++|+| ++. +|++|+.||.|++||+ .++. ...+.+ |.. .|.+++|+| +.+|++++.||.|+
T Consensus 62 ~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~-------------~~~~~~~~~~~-~v~~l~~~~-~~~l~s~~~d~~i~ 125 (342)
T 1yfq_A 62 CNFID-NTDLQIYVGTVQGEILKVDLIGSPS-------------FQALTNNEANL-GICRICKYG-DDKLIAASWDGLIE 125 (342)
T ss_dssp EEEEE-SSSEEEEEEETTSCEEEECSSSSSS-------------EEECBSCCCCS-CEEEEEEET-TTEEEEEETTSEEE
T ss_pred EEECC-CCCcEEEEEcCCCeEEEEEeccCCc-------------eEeccccCCCC-ceEEEEeCC-CCEEEEEcCCCeEE
Confidence 99999 788 9999999999999999 7651 245667 876 589999999 99999999999999
Q ss_pred EEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC
Q 011709 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (479)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (479)
+||+++....... ....++..+. |...|.+++|+|++ +++++.|+
T Consensus 126 iwd~~~~~~~~~~-------------------------------~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~ 170 (342)
T 1yfq_A 126 VIDPRNYGDGVIA-------------------------------VKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNS 170 (342)
T ss_dssp EECHHHHTTBCEE-------------------------------EEESCSSSSS-SCCCEEEEEECSSE---EEEEESTT
T ss_pred EEccccccccccc-------------------------------ccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCC
Confidence 9998641000000 0001112333 77889999999865 89999999
Q ss_pred eEEEEeCCC-CCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCC-------
Q 011709 302 CLILWDARV-GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA------- 373 (479)
Q Consensus 302 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~------- 373 (479)
.|++||+++ +..........|...|.+++|+|.++.+|++|+.||.|++||++.........++..+..|..
T Consensus 171 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (342)
T 1yfq_A 171 QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250 (342)
T ss_dssp EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS
T ss_pred eEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccccc
Confidence 999999998 654344555678999999999984478999999999999999987310001266777877765
Q ss_pred --cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC-CC-ceeEEEecCCCeeeecCC
Q 011709 374 --AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-SP-SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 374 --~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh-~~-~~~~~~sp~~~~l~~~~~ 449 (479)
.|++++|+|++++ |++++.||.|++||+..+ .++....+| .. +.+++ |++.+|++++.
T Consensus 251 ~~~i~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~ 312 (342)
T 1yfq_A 251 AYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQTR---------------KKIKNFAKFNEDSVVKIA--CSDNILCLATS 312 (342)
T ss_dssp CCCEEEEEECTTTCC-EEEEETTSCEEEEETTTT---------------EEEEECCCCSSSEEEEEE--ECSSEEEEEEE
T ss_pred ceeEEEEEEcCCCCE-EEEecCCceEEEEcCccH---------------hHhhhhhcccCCCceEec--CCCCeEEEEec
Confidence 9999999999995 679999999999999874 445667777 55 88888 99999999998
Q ss_pred Ccccccee
Q 011709 450 GLSYANKK 457 (479)
Q Consensus 450 ~~~~~d~~ 457 (479)
||.
T Consensus 313 -----Dg~ 315 (342)
T 1yfq_A 313 -----DDT 315 (342)
T ss_dssp -----CTH
T ss_pred -----CCc
Confidence 776
No 89
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.5e-31 Score=249.23 Aligned_cols=247 Identities=15% Similarity=0.255 Sum_probs=202.5
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
.|.++|.+++|+| ++.++|++..++.+.+|+.... .......+|.. .|++++|+|++++|++++ |
T Consensus 7 ~~~~~v~~~~~s~-dg~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~-d 71 (337)
T 1gxr_A 7 MGSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPRH------------ARQINTLNHGE-VVCAVTISNPTRHVYTGG-K 71 (337)
T ss_dssp EEEEECCEEEECS-SSCEEECCCCTTSSSSTTCCSE------------EEEEEEECCSS-CCCEEEECSSSSEEEEEC-B
T ss_pred ccCCceeEEEECC-CCCEEEeecCCCcEeccccCCc------------cccceeccCCC-ceEEEEEecCCcEEEEcC-C
Confidence 4567899999999 8889988887777666644332 23334457876 589999999999999999 9
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec--CCCCceEEEEEeeCCCcEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~ 295 (479)
|.|++||+.+..... .+..+. +|...|.+++|+|++ .+++
T Consensus 72 g~i~iw~~~~~~~~~-------------------------------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 113 (337)
T 1gxr_A 72 GCVKVWDISHPGNKS-------------------------------------PVSQLDCLNRDNYIRSCKLLPDG-CTLI 113 (337)
T ss_dssp SEEEEEETTSTTCCS-------------------------------------CSEEEECSCTTSBEEEEEECTTS-SEEE
T ss_pred CeEEEEECCCCCcee-------------------------------------eeecccccCCCCcEEEEEEcCCC-CEEE
Confidence 999999997643211 112222 688999999999998 7899
Q ss_pred EEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcE
Q 011709 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 375 (479)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v 375 (479)
+++.||.|++||+++++......+..|...|.+++|+| ++.+|++++.||.|++||++. ++++..+..|...|
T Consensus 114 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~------~~~~~~~~~~~~~i 186 (337)
T 1gxr_A 114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHN------QTLVRQFQGHTDGA 186 (337)
T ss_dssp EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCCSSCE
T ss_pred EEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCC------CceeeeeecccCce
Confidence 99999999999999887445566778999999999999 999999999999999999998 78888999999999
Q ss_pred EEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccc
Q 011709 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYAN 455 (479)
Q Consensus 376 ~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d 455 (479)
.+++|+|++. .|++++.||.|++||++.. ..+........+.+++|+|++.++++++. +
T Consensus 187 ~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~---------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----~ 245 (337)
T 1gxr_A 187 SCIDISNDGT-KLWTGGLDNTVRSWDLREG---------------RQLQQHDFTSQIFSLGYCPTGEWLAVGME-----S 245 (337)
T ss_dssp EEEEECTTSS-EEEEEETTSEEEEEETTTT---------------EEEEEEECSSCEEEEEECTTSSEEEEEET-----T
T ss_pred EEEEECCCCC-EEEEEecCCcEEEEECCCC---------------ceEeeecCCCceEEEEECCCCCEEEEEcC-----C
Confidence 9999999998 4779999999999999874 22333333455899999999999999998 8
Q ss_pred eeEEEEeecc
Q 011709 456 KKIKIYCHLE 465 (479)
Q Consensus 456 ~~i~i~~~~~ 465 (479)
+.|++|+...
T Consensus 246 ~~i~~~~~~~ 255 (337)
T 1gxr_A 246 SNVEVLHVNK 255 (337)
T ss_dssp SCEEEEETTS
T ss_pred CcEEEEECCC
Confidence 9999998654
No 90
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.1e-31 Score=259.35 Aligned_cols=250 Identities=13% Similarity=0.079 Sum_probs=168.3
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC--------CCCc
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--------TEPY 210 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~--------~~~~ 210 (479)
|.+.+.... .+.++.+||+|+.|++|+|||+.++.... ......+.||++ .|++++|+| ++++
T Consensus 88 ~~~~~~~~~-~~~~~~~las~~~d~~v~lw~~~~~~~~~-------~~~~~~~~gH~~-~v~~v~~~p~~~~~~~~d~~~ 158 (393)
T 4gq1_A 88 HDGDGNVNS-SPVYSLFLACVCQDNTVRLIITKNETIIT-------QHVLGGKSGHHN-FVNDIDIADVYSADNRLAEQV 158 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEE-------EEEECTTTSCSS-CEEEEEEEEEECTTCSEEEEE
T ss_pred cCCCcceee-cCCCCCEEEEEeCCCcEEEEECCCCccce-------eeeecccCCCCC-ceEEEEEccccccccCCCCCE
Confidence 433333333 34477899999999999999998763211 012234578997 599999998 7889
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
|+||+.|++|+|||+.+... +..+.+|...|.+++|+|++
T Consensus 159 las~s~D~tv~~Wd~~~~~~----------------------------------------~~~~~~~~~~v~~v~~~p~~ 198 (393)
T 4gq1_A 159 IASVGDDCTLIIWRLTDEGP----------------------------------------ILAGYPLSSPGISVQFRPSN 198 (393)
T ss_dssp EEEEETTSEEEEEEEETTEE----------------------------------------EEEEEECSSCEEEEEEETTE
T ss_pred EEEEECCCeEEEEECCCCce----------------------------------------eeeecCCCCCcEEEEECCCC
Confidence 99999999999999965322 24556788999999999998
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCc-----------------------eeeeccCCCCeEEEEecCCCCcEEEEEeCCCc
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPV-----------------------IKVEKAHDADLHCVDWNPLDDNLILTGSADNS 347 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~-----------------------~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~ 347 (479)
..+|++++.||+|++||+++++... .....+|...+.++.|++.++..|++++.|++
T Consensus 199 ~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~ 278 (393)
T 4gq1_A 199 PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGA 278 (393)
T ss_dssp EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSE
T ss_pred CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCC
Confidence 6789999999999999999875210 01123677889999998449999999999999
Q ss_pred EEEEecCCCCCCCCCCceeeecCCCCcEEEE------------------EEec-CCCcEEEEEeCCCCEEEEeCCCCCcc
Q 011709 348 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCV------------------QWSP-DKSSVFGSSAEDGLLNIWDYEKVGKK 408 (479)
Q Consensus 348 I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l------------------~~~p-~~~~llas~s~Dg~v~iwd~~~~~~~ 408 (479)
+++||++. +.....+..|...+..+ .|+| .+..++++|+.||.|+|||+..+.
T Consensus 279 i~vwd~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~-- 350 (393)
T 4gq1_A 279 WLRWNLFA------NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD-- 350 (393)
T ss_dssp EEEEEC-------------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT--
T ss_pred EEEEECcc------CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc--
Confidence 99999987 33344444443333332 3333 344467788899999999998741
Q ss_pred ccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 409 VEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 409 ~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
+ +.....++..|.+++|+|||++|+++++ +| +.+|..
T Consensus 351 ----------~--~~~~~~~~~~V~svafspdG~~LA~as~-----~G-v~lvrL 387 (393)
T 4gq1_A 351 ----------S--NSIPIQLGMPIVDFCWHQDGSHLAIATE-----GS-VLLTRL 387 (393)
T ss_dssp ----------C--CEEEEECSSCEEEEEECTTSSEEEEEES-----SE-EEEEEE
T ss_pred ----------E--EEEecCCCCcEEEEEEcCCCCEEEEEeC-----CC-eEEEEE
Confidence 1 1122334456999999999999999987 55 555543
No 91
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.7e-30 Score=273.51 Aligned_cols=284 Identities=20% Similarity=0.302 Sum_probs=224.9
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|+- ..|..+. .+..+.||+.... ........|.+.|.+
T Consensus 15 ~v~~i~~sp~~--------~~la~~~-----~~g~v~iwd~~~~---------------------~~~~~~~~~~~~v~~ 60 (814)
T 3mkq_A 15 RVKGIDFHPTE--------PWVLTTL-----YSGRVEIWNYETQ---------------------VEVRSIQVTETPVRA 60 (814)
T ss_dssp CEEEEEECSSS--------SEEEEEE-----TTSEEEEEETTTT---------------------EEEEEEECCSSCEEE
T ss_pred ceEEEEECCCC--------CEEEEEe-----CCCEEEEEECCCC---------------------ceEEEEecCCCcEEE
Confidence 56788998852 3344332 5678888864310 013344579999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEec
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI 225 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~ 225 (479)
++|+| ++.+||+|+.||.|+|||+.++ .....+.+|.+ .|++++|+|++++|++|+.||.|++||+
T Consensus 61 ~~~s~-~~~~l~~~~~dg~i~vw~~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 126 (814)
T 3mkq_A 61 GKFIA-RKNWIIVGSDDFRIRVFNYNTG------------EKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNW 126 (814)
T ss_dssp EEEEG-GGTEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEEEETTSEEEEEEG
T ss_pred EEEeC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEEecCCC-CEEEEEEeCCCCEEEEEcCCCEEEEEEC
Confidence 99999 8889999999999999999987 56678889987 5999999999999999999999999999
Q ss_pred CCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEE
Q 011709 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 305 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 305 (479)
.++.. ....+.+|...|.+++|+|.+...|++++.||.|++
T Consensus 127 ~~~~~---------------------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~v 167 (814)
T 3mkq_A 127 ENNWA---------------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (814)
T ss_dssp GGTSE---------------------------------------EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred CCCce---------------------------------------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 75311 125677899999999999933378999999999999
Q ss_pred EeCCCCCCCceeeeccCCCCeEEEEecCC-CCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCC
Q 011709 306 WDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384 (479)
Q Consensus 306 wd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 384 (479)
||++++.. .......+...+.+++|+|. ++.+|++|+.||.|++||++. +.++..+.+|...|.+++|+|++
T Consensus 168 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~~ 240 (814)
T 3mkq_A 168 WSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAVFHPTL 240 (814)
T ss_dssp EETTCSSC-SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT------TEEEEEEECCSSCEEEEEECSSS
T ss_pred EECCCCcc-eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC------CcEEEEEcCCCCCEEEEEEcCCC
Confidence 99988773 23333345589999999983 578999999999999999988 78899999999999999999999
Q ss_pred CcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC-CceeEEEecCCCee-eecCCCccccceeEEEEe
Q 011709 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS-PSSSIKFVLRESCL-VDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 385 ~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~-~~~~~~~sp~~~~l-~~~~~~~~~~d~~i~i~~ 462 (479)
+ +|++++.||.|++||+... ........|. .+.+++|+|++..+ ++++. ++.+.+|.
T Consensus 241 ~-~l~~~~~dg~v~vwd~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 299 (814)
T 3mkq_A 241 P-IIISGSEDGTLKIWNSSTY---------------KVEKTLNVGLERSWCIATHPTGRKNYIASGF-----DNGFTVLS 299 (814)
T ss_dssp S-EEEEEETTSCEEEEETTTC---------------SEEEEECCSSSSEEEEEECTTCGGGEEEEEE-----TTEEEEEE
T ss_pred C-EEEEEeCCCeEEEEECCCC---------------cEEEEeecCCCcEEEEEEccCCCceEEEEEe-----CCCEEEEE
Confidence 9 5789999999999999874 2334445554 48999999998742 44444 45666775
Q ss_pred ec
Q 011709 463 HL 464 (479)
Q Consensus 463 ~~ 464 (479)
..
T Consensus 300 ~~ 301 (814)
T 3mkq_A 300 LG 301 (814)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 92
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=5.6e-31 Score=251.77 Aligned_cols=204 Identities=15% Similarity=0.096 Sum_probs=164.4
Q ss_pred cCCCceeEEEecCCCCcEEEE--EeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec
Q 011709 138 IHPGEVNRIRELPQNTKIVAT--HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s 215 (479)
.+...+.+++|+| ++++||+ ++.|++|+|||+.++ .....+. |.. .|++++|+|+|++|++++
T Consensus 131 ~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~------------~~~~~~~-~~~-~V~~v~fspdg~~l~s~s 195 (365)
T 4h5i_A 131 NADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDL------------TEKFEIE-TRG-EVKDLHFSTDGKVVAYIT 195 (365)
T ss_dssp CTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTT------------EEEEEEE-CSS-CCCEEEECTTSSEEEEEC
T ss_pred CcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCC------------cEEEEeC-CCC-ceEEEEEccCCceEEecc
Confidence 3455689999999 7777664 447899999999987 4455554 554 489999999999999998
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
.| .+++|+..++.... .....+|...|.+++|+|++ .+++
T Consensus 196 ~~-~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~v~~v~fspdg-~~l~ 235 (365)
T 4h5i_A 196 GS-SLEVISTVTGSCIA--------------------------------------RKTDFDKNWSLSKINFIADD-TVLI 235 (365)
T ss_dssp SS-CEEEEETTTCCEEE--------------------------------------EECCCCTTEEEEEEEEEETT-EEEE
T ss_pred ce-eEEEEEeccCccee--------------------------------------eeecCCCCCCEEEEEEcCCC-CEEE
Confidence 55 56666654432210 12345688899999999999 7888
Q ss_pred EEecCC----eEEEEeCCCCCCCc--eeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee-
Q 011709 296 SVGDDS----CLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF- 368 (479)
Q Consensus 296 s~~~dg----~i~iwd~~~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~- 368 (479)
+++.|+ .+++||+....... ...+.+|...|++++|+| ++++||+|+.|++|+|||+++ ++++..+
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~------~~~~~~~~ 308 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKD------LSMSKIFK 308 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTT------TEEEEEET
T ss_pred EEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCC------CcEEEEec
Confidence 888887 68899988765322 334568999999999999 999999999999999999998 7888874
Q ss_pred cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.+|..+|++|+|+|+++ +|||||.|++|+|||+..
T Consensus 309 ~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 309 QAHSFAITEVTISPDST-YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCT
T ss_pred CcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCC
Confidence 79999999999999999 578999999999999965
No 93
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=2.4e-30 Score=244.79 Aligned_cols=291 Identities=16% Similarity=0.217 Sum_probs=213.0
Q ss_pred hhccccccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEe
Q 011709 58 LANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTI 137 (479)
Q Consensus 58 ~~~~~l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (479)
|..|.- +..++.|.|.-. ..| .+++.+..++||++..... ..........
T Consensus 34 L~GH~~--~V~~v~~sp~~~-------~~l-----~S~s~D~~i~vWd~~~~~~----------------~~~~~~~~l~ 83 (340)
T 4aow_A 34 LKGHNG--WVTQIATTPQFP-------DMI-----LSASRDKTIIMWKLTRDET----------------NYGIPQRALR 83 (340)
T ss_dssp ECCCSS--CEEEEEECTTCT-------TEE-----EEEETTSCEEEEEECCSSS----------------CSEEEEEEEC
T ss_pred ECCccC--CEEEEEEeCCCC-------CEE-----EEEcCCCeEEEEECCCCCc----------------ccceeeEEEe
Confidence 345543 778899988521 122 2344788999998753211 0111234456
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
+|.+.|.+++|+| ++.+|++|+.||.|++|+.... ........+.. .+..+.+++++.+|++|+.|
T Consensus 84 ~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~------------~~~~~~~~~~~-~~~~~~~~~~~~~l~s~s~d 149 (340)
T 4aow_A 84 GHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTG------------TTTRRFVGHTK-DVLSVAFSSDNRQIVSGSRD 149 (340)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEECTTSSCEEEEETT
T ss_pred CCCCCEEEEEECC-CCCEEEEEcccccceEEeeccc------------ceeeeecCCCC-ceeEEEEeecCccceeecCC
Confidence 8999999999999 8899999999999999999876 44455566665 47899999999999999999
Q ss_pred CcEEEEecCCCccccccCCc-----ccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 218 KSVVLWSIQDHITSSATDPA-----TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+.+++||+............ ...................++.+.+|+......+..+.+|...|++++|+|++ .
T Consensus 150 ~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~-~ 228 (340)
T 4aow_A 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG-S 228 (340)
T ss_dssp SCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-S
T ss_pred CeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC-C
Confidence 99999998764322111100 00000111100111112345678888988888889999999999999999998 7
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceee-----
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK----- 367 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~----- 367 (479)
+|++++.||.|++||+++.. .+..+. +...|.+++|+| ++. +++++.|+.|++||++. +..+..
T Consensus 229 ~l~s~s~Dg~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~-~~~-~~~~~~d~~i~iwd~~~------~~~~~~~~~~~ 297 (340)
T 4aow_A 229 LCASGGKDGQAMLWDLNEGK--HLYTLD-GGDIINALCFSP-NRY-WLCAATGPSIKIWDLEG------KIIVDELKQEV 297 (340)
T ss_dssp EEEEEETTCEEEEEETTTTE--EEEEEE-CSSCEEEEEECS-SSS-EEEEEETTEEEEEETTT------TEEEEEECCC-
T ss_pred EEEEEeCCCeEEEEEeccCc--eeeeec-CCceEEeeecCC-CCc-eeeccCCCEEEEEECCC------CeEEEeccccc
Confidence 89999999999999999877 555554 557899999999 665 55666799999999986 333333
Q ss_pred ----ecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 368 ----FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 368 ----~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
..+|...|++++|+|++++ |++|+.||.|+|||++++
T Consensus 298 ~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 298 ISTSSKAEPPQCTSLAWSADGQT-LFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ------CCCCCEEEEEECTTSSE-EEEEETTSCEEEEEEEC-
T ss_pred eeeeccCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEeCCCc
Confidence 3478899999999999995 789999999999999885
No 94
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=7.2e-30 Score=241.68 Aligned_cols=287 Identities=14% Similarity=0.202 Sum_probs=210.6
Q ss_pred hhhhhhccccccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceee
Q 011709 54 LYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKK 133 (479)
Q Consensus 54 ~y~~~~~~~l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (479)
+..++..|.- +..++.|.|+- ..|+.+ ..+..+.||++..... .....
T Consensus 3 ~~~~~~gH~~--~v~~~~~~~~~--------~~l~~~-----~~dg~i~iw~~~~~~~-----------------~~~~~ 50 (351)
T 3f3f_A 3 MQPFDSGHDD--LVHDVVYDFYG--------RHVATC-----SSDQHIKVFKLDKDTS-----------------NWELS 50 (351)
T ss_dssp CCCEECCCSS--CEEEEEECSSS--------SEEEEE-----ETTSEEEEEEECSSSC-----------------CEEEE
T ss_pred ccccCccccc--ceeEEEEcCCC--------CEEEEe-----eCCCeEEEEECCCCCC-----------------cceec
Confidence 3344455544 77899998852 233322 3678899998652110 01113
Q ss_pred EEEecCCCceeEEEecCC-CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCc
Q 011709 134 HKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPY 210 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~-~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~ 210 (479)
....+|.+.|++++|+|. ++.+|++|+.||+|+|||+.++..... .........+.+|.. .|.+++|+|+ +.+
T Consensus 51 ~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~---~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 126 (351)
T 3f3f_A 51 DSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS---GRRWNKLCTLNDSKG-SLYSVKFAPAHLGLK 126 (351)
T ss_dssp EEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS---SCSEEEEEEECCCSS-CEEEEEECCGGGCSE
T ss_pred ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc---ccCcceeeeecccCC-ceeEEEEcCCCCCcE
Confidence 344589999999999995 588999999999999999987632210 001134567788887 5899999999 999
Q ss_pred EEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC-
Q 011709 211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS- 289 (479)
Q Consensus 211 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~- 289 (479)
|++++.||.|++||+.+............. ........+|...+.+++|+|+
T Consensus 127 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~p~~ 179 (351)
T 3f3f_A 127 LACLGNDGILRLYDALEPSDLRSWTLTSEM---------------------------KVLSIPPANHLQSDFCLSWCPSR 179 (351)
T ss_dssp EEEEETTCEEEEEECSSTTCTTCCEEEEEE---------------------------ESCSCCCSSCSCCCEEEEECCCS
T ss_pred EEEecCCCcEEEecCCChHHhccccccccc---------------------------cccccccCCcccceeEEEeccCC
Confidence 999999999999999875443221110000 0000112357788999999997
Q ss_pred -CCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCC----cEEEEEeCCCcEEEEecCCCCCC-----
Q 011709 290 -SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD----NLILTGSADNSVRMFDRRNLTSN----- 359 (479)
Q Consensus 290 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~----~~l~tgs~dg~I~iwd~~~~~~~----- 359 (479)
...++++++.|+.+.+|+...+....+..+.+|...|++++|+| ++ .+|++|+.||.|++||++.....
T Consensus 180 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 258 (351)
T 3f3f_A 180 FSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE 258 (351)
T ss_dssp SSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEEEEECC-------
T ss_pred CCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC
Confidence 23789999999999888888777444667778999999999999 76 89999999999999999863100
Q ss_pred -----------------------------------CCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 360 -----------------------------------GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 360 -----------------------------------~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
....++..+.+|...|++++|+|++++ |++++.||.|+|||+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 259 SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI-LSSAGDDGKVRLWKATY 337 (351)
T ss_dssp --------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC-EEEEETTSCEEEEEECT
T ss_pred cccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE-EEEecCCCcEEEEecCc
Confidence 001567778899999999999999985 78999999999999987
Q ss_pred C
Q 011709 405 V 405 (479)
Q Consensus 405 ~ 405 (479)
+
T Consensus 338 ~ 338 (351)
T 3f3f_A 338 S 338 (351)
T ss_dssp T
T ss_pred C
Confidence 4
No 95
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.98 E-value=8.1e-30 Score=247.22 Aligned_cols=284 Identities=17% Similarity=0.247 Sum_probs=207.3
Q ss_pred hhhhccccchhhhhhhhccccccceeeEEecC-CcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccc
Q 011709 43 KYTHWKSLVPVLYDWLANHNLVWPSLSCRWGP-QLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQ 121 (479)
Q Consensus 43 ~~~~w~~~~~~~y~~~~~~~l~wpsl~~~w~p-~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (479)
..++|..........+..|.- +..++.|.| +- ..|+.+ ..+..+.||++....... .
T Consensus 24 ~~~v~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~--------~~l~~~-----~~dg~i~iw~~~~~~~~~-------~ 81 (408)
T 4a11_B 24 TRRVLGLELNKDRDVERIHGG--GINTLDIEPVEG--------RYMLSG-----GSDGVIVLYDLENSSRQS-------Y 81 (408)
T ss_dssp HHHHHTEEECTTEEECCCCSS--CEEEEEECTTTC--------CEEEEE-----ETTSCEEEEECCCCSSSS-------C
T ss_pred cceeeccccCcceeeeeccCC--cEEEEEEecCCC--------CEEEEE-----cCCCeEEEEECCCCcccc-------e
Confidence 445565554444444555543 778999988 41 334333 257789999865322100 0
Q ss_pred cCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceee
Q 011709 122 FNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA 201 (479)
Q Consensus 122 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~ 201 (479)
+..... .........+|.+.|.+++|+|.++.+|++++.||.|++||+.++ .....+. +.. .+.+
T Consensus 82 ~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------------~~~~~~~-~~~-~~~~ 146 (408)
T 4a11_B 82 YTCKAV-CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL------------QTADVFN-FEE-TVYS 146 (408)
T ss_dssp EEECEE-EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT------------EEEEEEE-CSS-CEEE
T ss_pred Eecccc-ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC------------ccceecc-CCC-ceee
Confidence 000000 000000012599999999999988889999999999999999987 3444444 443 4789
Q ss_pred eeecCCC---CcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCC
Q 011709 202 LAMCPTE---PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (479)
Q Consensus 202 l~~s~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (479)
+.|++.+ .+|++|+.||.|++||+.++.. +..+.+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----------------------------------------~~~~~~~~ 186 (408)
T 4a11_B 147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC----------------------------------------SHILQGHR 186 (408)
T ss_dssp EEECSSCSSCCEEEEEESSSSEEEEESSSSCC----------------------------------------CEEECCCC
T ss_pred eEeecCCCCCcEEEEEcCCCeEEEEeCCCcce----------------------------------------eeeecCCC
Confidence 9999854 4899999999999999975322 25677899
Q ss_pred CceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCcee--------------eeccCCCCeEEEEecCCCCcEEEEEeC
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK--------------VEKAHDADLHCVDWNPLDDNLILTGSA 344 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------~~~~~~~~v~~l~~sp~~~~~l~tgs~ 344 (479)
..|.+++|+|++..+|++++.||.|++||+++....... ....|...|.+++|+| ++.+|++++.
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 265 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGT 265 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEET
T ss_pred CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecC
Confidence 999999999999667999999999999999876532111 1257889999999999 9999999999
Q ss_pred CCcEEEEecCCCCCC-----------------------------------------CCCCceeeecCCCCcEEEEEEecC
Q 011709 345 DNSVRMFDRRNLTSN-----------------------------------------GVGSPINKFEGHSAAVLCVQWSPD 383 (479)
Q Consensus 345 dg~I~iwd~~~~~~~-----------------------------------------~~~~~~~~~~~h~~~v~~l~~~p~ 383 (479)
||.|++||+++.... ..+.++..+.+|...|++++|+|+
T Consensus 266 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~ 345 (408)
T 4a11_B 266 DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSN 345 (408)
T ss_dssp TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETT
T ss_pred CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCC
Confidence 999999999864311 123566777889999999999999
Q ss_pred CCcEEEEEeCCCCEEEEeCCCC
Q 011709 384 KSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 384 ~~~llas~s~Dg~v~iwd~~~~ 405 (479)
++ +|++++.||.|++||++..
T Consensus 346 ~~-~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 346 FQ-ELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp TT-EEEEEETTSCEEEEEECC-
T ss_pred CC-EEEEECCCCeEEEEeCCCC
Confidence 98 5789999999999999884
No 96
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.3e-31 Score=252.52 Aligned_cols=239 Identities=10% Similarity=0.061 Sum_probs=181.1
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccc
Q 011709 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (479)
Q Consensus 152 ~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~ 231 (479)
++.+||+|+.||+|++||+.++ +....+. . ..|.++.|+|+ +++|+.|++|++|+......
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~------------~~~~~~~--~-~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~- 107 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDS------------KTITTIT--T-PNPRTGGEHPA---IISRGPCNRLLLLYPGNQIT- 107 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSS------------SCEEEEE--E-ECCCTTCCCCS---EEEECSTTEEEEEETTTEEE-
T ss_pred CCCEEEEECCCCcEEEEECCCC------------cEEEEEe--c-CCceeeeeCCc---eEEecCCCeEEEEEccCceE-
Confidence 6789999999999999999987 3444444 2 24789999998 99999999999999864221
Q ss_pred cccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee-cCCCCceEEEEEee--CCCcEEEEEecCCeEEEEeC
Q 011709 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCP--SSAQEFCSVGDDSCLILWDA 308 (479)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~--~~~~~l~s~~~dg~i~iwd~ 308 (479)
+++......+..+ .+|...|.+++|+| ++ .+|++++.||+|++||+
T Consensus 108 ------------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 108 ------------------------------ILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ------------------------------EEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEES
T ss_pred ------------------------------EeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEEC
Confidence 1111222212223 35778899999999 88 78999999999999999
Q ss_pred CCCCCCceeee-ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCce-eeecC-CCCcEEEEEEecCCC
Q 011709 309 RVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI-NKFEG-HSAAVLCVQWSPDKS 385 (479)
Q Consensus 309 ~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~-~~~~~-h~~~v~~l~~~p~~~ 385 (479)
++++ ..... ..|...|.+++|+| ++.+|++|+.||.|++||+++ +..+ ..+.. |.++|++++|+|++.
T Consensus 157 ~~~~--~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~~~h~~~v~~l~fs~~g~ 227 (343)
T 3lrv_A 157 EDDS--QYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSS------PDQASSRFPVDEEAKIKEVKFADNGY 227 (343)
T ss_dssp SSSC--EEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSC------TTSCCEECCCCTTSCEEEEEECTTSS
T ss_pred CCCc--EEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCC------CCCCccEEeccCCCCEEEEEEeCCCC
Confidence 9888 44443 35666899999999 999999999999999999998 5666 77887 999999999999998
Q ss_pred cEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-c--eeEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 386 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-S--SSIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 386 ~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~--~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
+ |++++ |+.|+|||++........ . .+.+|.. + .+++|+|++.+|++++.+ ++.|++|+
T Consensus 228 ~-l~s~~-~~~v~iwd~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~g~~l~~~s~~----d~~i~v~~ 289 (343)
T 3lrv_A 228 W-MVVEC-DQTVVCFDLRKDVGTLAY-P-----------TYTIPEFKTGTVTYDIDDSGKNMIAYSNE----SNSLTIYK 289 (343)
T ss_dssp E-EEEEE-SSBEEEEETTSSTTCBSS-C-----------CCBC-----CCEEEEECTTSSEEEEEETT----TTEEEEEE
T ss_pred E-EEEEe-CCeEEEEEcCCCCcceee-c-----------ccccccccccceEEEECCCCCEEEEecCC----CCcEEEEE
Confidence 5 67888 559999999985322111 0 0111111 2 469999999999997654 67999997
Q ss_pred ecccc
Q 011709 463 HLEAL 467 (479)
Q Consensus 463 ~~~~~ 467 (479)
....-
T Consensus 290 ~~~~~ 294 (343)
T 3lrv_A 290 FDKKT 294 (343)
T ss_dssp ECTTT
T ss_pred Ecccc
Confidence 65443
No 97
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.98 E-value=1.7e-31 Score=261.88 Aligned_cols=214 Identities=17% Similarity=0.234 Sum_probs=173.0
Q ss_pred cEEEeccCCCceeeeeecCC-CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCC
Q 011709 188 DLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP 266 (479)
Q Consensus 188 ~~~~~~h~~~~v~~l~~s~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (479)
.....+|.. .|++|+|+|. +.+||+|+.||+|+|||+.+....
T Consensus 112 ~~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~----------------------------------- 155 (435)
T 4e54_B 112 LQKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP----------------------------------- 155 (435)
T ss_dssp CCEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----------------------------------
T ss_pred cccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----------------------------------
Confidence 345667776 5999999995 568999999999999999753221
Q ss_pred CCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC
Q 011709 267 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN 346 (479)
Q Consensus 267 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg 346 (479)
....+.+|...|++|+|+|.+..+|++|+.||+|++||+++...........+...+.+++|+| ++.+|++|+.||
T Consensus 156 ---~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg 231 (435)
T 4e54_B 156 ---TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVG 231 (435)
T ss_dssp ---EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSS
T ss_pred ---eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCC
Confidence 1234568999999999999655799999999999999998765212222223445678999999 999999999999
Q ss_pred cEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEe
Q 011709 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 426 (479)
Q Consensus 347 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (479)
.|++||++. +.+..+.+|...|++++|+|+++.+|++++.|+.|+|||++...... .+...
T Consensus 232 ~i~~wd~~~-------~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~------------~~~~~ 292 (435)
T 4e54_B 232 NVILLNMDG-------KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA------------SFLYS 292 (435)
T ss_dssp BEEEEESSS-------CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS------------CCSBC
T ss_pred cEeeeccCc-------ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc------------eEEEe
Confidence 999999974 67788999999999999999998889999999999999998742211 11223
Q ss_pred CCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 427 AGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 427 ~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
.+|.. |.+++|+|++.+|++++. ||.|++|+...
T Consensus 293 ~~h~~~v~~~~~spdg~~l~s~~~-----D~~i~iwd~~~ 327 (435)
T 4e54_B 293 LPHRHPVNAACFSPDGARLLTTDQ-----KSEIRVYSASQ 327 (435)
T ss_dssp CBCSSCEEECCBCTTSSEEEEEES-----SSCEEEEESSS
T ss_pred eeccccccceeECCCCCeeEEEcC-----CCEEEEEECCC
Confidence 45665 899999999999999999 99999998754
No 98
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=4.7e-30 Score=262.71 Aligned_cols=283 Identities=16% Similarity=0.269 Sum_probs=221.2
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCc-eeeeeecC--CCCcEEEe
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA-EFALAMCP--TEPYVLSG 214 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-v~~l~~s~--~~~~l~s~ 214 (479)
.|.+.|.+++|+| ++++||+++ ++.|+|||+.++.. .......+.+|.. . |++++|+| ++++|++|
T Consensus 16 ~~~~~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~--------~~~~~~~~~~h~~-~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 16 TQRNFTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDS--------KVPPVVQFTGHGS-SVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp CCTTCCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCC--------SSCSEEEECTTTT-SCEEEEEECSSTTCCEEEEE
T ss_pred CccCceeEEEECC-CCCEEEEec-CCeEEEEECCCCCC--------ccccceEEecCCC-ceEEEEEECcCCCCCEEEEe
Confidence 6889999999999 888999988 78999999986511 1145677889986 6 89999999 99999999
Q ss_pred cCCCcEEEEecCCC--------ccccccC----CcccccCCCCCceeecCCCC--CCCCCCCCCCCCCCCceeecCCCCc
Q 011709 215 GKDKSVVLWSIQDH--------ITSSATD----PATAKSAGSSGSIIKQSPKP--GDGNDKAADGPSVGPRGIYNGHEDT 280 (479)
Q Consensus 215 s~dg~i~vwd~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~ 280 (479)
+.||.|++||+.++ ....... .............+...... ..+.+.+|+ ....+..+.+|...
T Consensus 85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~ 162 (615)
T 1pgu_A 85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR 162 (615)
T ss_dssp ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC
T ss_pred cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc
Confidence 99999999999643 1111110 11111122222222222111 124566666 45667888899999
Q ss_pred eEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCC---CeEEEEecCCC-CcEEEEEeCCCcEEEEecCCC
Q 011709 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA---DLHCVDWNPLD-DNLILTGSADNSVRMFDRRNL 356 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~l~~sp~~-~~~l~tgs~dg~I~iwd~~~~ 356 (479)
|.+++|+|++..++++++.|+.|++||+++++ ....+.+|.. .|.+++|+| + +.+|++|+.||.|++||+++
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~- 238 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKS- 238 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTT-
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCC-
Confidence 99999999996589999999999999999877 6777888998 999999999 7 99999999999999999998
Q ss_pred CCCCCCCceeee-c---CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC---
Q 011709 357 TSNGVGSPINKF-E---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--- 429 (479)
Q Consensus 357 ~~~~~~~~~~~~-~---~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh--- 429 (479)
++.+..+ . .|...|.+++|+ ++. +|++++.||.|++||++.. +.+.....+
T Consensus 239 -----~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~---------------~~~~~~~~~~~~ 296 (615)
T 1pgu_A 239 -----GEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTS---------------KCVQKWTLDKQQ 296 (615)
T ss_dssp -----CCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTT---------------EEEEEEECCTTC
T ss_pred -----CCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCC---------------cEEEEEcCCCCc
Confidence 7788888 6 899999999999 777 5789999999999999874 223333333
Q ss_pred --CCceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 430 --SPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 430 --~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
..+.++.|. ++.++++++. ++.|++|+...
T Consensus 297 ~~~~~~~~~~~-~~~~l~~~~~-----~g~i~~~d~~~ 328 (615)
T 1pgu_A 297 LGNQQVGVVAT-GNGRIISLSL-----DGTLNFYELGH 328 (615)
T ss_dssp GGGCEEEEEEE-ETTEEEEEET-----TSCEEEEETTE
T ss_pred ccCceeEEEeC-CCCeEEEEEC-----CCCEEEEECCC
Confidence 236778885 8899999998 99999998654
No 99
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=4.3e-30 Score=284.14 Aligned_cols=347 Identities=18% Similarity=0.240 Sum_probs=253.8
Q ss_pred hhhhhccccchhhhhhhhccccccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccc
Q 011709 42 DKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQ 121 (479)
Q Consensus 42 ~~~~~w~~~~~~~y~~~~~~~l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (479)
...++|.-........+..|. -+..++.|.|+- ..+.. ++.+..+.||+.....
T Consensus 637 ~~i~vw~~~~~~~~~~~~~h~--~~v~~~~~s~~~--------~~l~s-----~~~d~~v~vwd~~~~~----------- 690 (1249)
T 3sfz_A 637 KTLQVFKAETGEKLLDIKAHE--DEVLCCAFSSDD--------SYIAT-----CSADKKVKIWDSATGK----------- 690 (1249)
T ss_dssp SCEEEEETTTCCEEEEECCCS--SCEEEEEECTTS--------SEEEE-----EETTSEEEEEETTTCC-----------
T ss_pred CeEEEEECCCCCEEEEeccCC--CCEEEEEEecCC--------CEEEE-----EeCCCeEEEEECCCCc-----------
Confidence 356677655443333333343 366778887751 23332 2367789998753211
Q ss_pred cCcccCCCceeeEEEecCCCceeEEEecCC-CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCcee
Q 011709 122 FNEEARSPFVKKHKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEF 200 (479)
Q Consensus 122 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~ 200 (479)
......+|.+.|.+++|+|. +..++++|+.||.|++||+.++ .....+.+|.. .|+
T Consensus 691 ----------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~------------~~~~~~~~h~~-~v~ 747 (1249)
T 3sfz_A 691 ----------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK------------ECRNTMFGHTN-SVN 747 (1249)
T ss_dssp ----------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS------------SEEEEECCCSS-CEE
T ss_pred ----------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc------------chhheecCCCC-CEE
Confidence 13344589999999999995 5568999999999999999887 56678889997 599
Q ss_pred eeeecCCCCcEEEecCCCcEEEEecCCCccccccCC-----------------cccccCCCCCceeecCCCCCCCCCCCC
Q 011709 201 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP-----------------ATAKSAGSSGSIIKQSPKPGDGNDKAA 263 (479)
Q Consensus 201 ~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (479)
+++|+|++++|++|+.||+|++||+.++........ .........+..+... ..+.+.+|
T Consensus 748 ~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~---~~~~v~~~ 824 (1249)
T 3sfz_A 748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA---AKNKVLLF 824 (1249)
T ss_dssp EEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE---ETTEEEEE
T ss_pred EEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE---cCCcEEEE
Confidence 999999999999999999999999987643211110 0011112222222222 13556677
Q ss_pred CCCCCCCceeec-CCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEE
Q 011709 264 DGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG 342 (479)
Q Consensus 264 ~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tg 342 (479)
+.........+. +|...|.+++|+|++ .++++++.||.|++||+.++. ....+.+|...|.+++|+| ++.+|+++
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~--~~~~~~~h~~~v~~v~~sp-dg~~l~s~ 900 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRL--KVADCRGHLSWVHGVMFSP-DGSSFLTA 900 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEE
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc--eeeecCCCccceEEEEECC-CCCEEEEE
Confidence 777766665554 799999999999999 789999999999999999887 6777889999999999999 99999999
Q ss_pred eCCCcEEEEecCCCCCCCC-----------------------CCceee--------ecCCCCcEEEEEEecCCCcEEEEE
Q 011709 343 SADNSVRMFDRRNLTSNGV-----------------------GSPINK--------FEGHSAAVLCVQWSPDKSSVFGSS 391 (479)
Q Consensus 343 s~dg~I~iwd~~~~~~~~~-----------------------~~~~~~--------~~~h~~~v~~l~~~p~~~~llas~ 391 (479)
+.||.|++||++....... ...+.. ...+...+.+++|+|++.+ +++|
T Consensus 901 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~-l~~g 979 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY-VAFG 979 (1249)
T ss_dssp ETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSE-EEEE
T ss_pred eCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCE-EEEE
Confidence 9999999999764110000 000000 1123467999999999995 7899
Q ss_pred eCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 392 AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 392 s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
+.||.|++||+..+ .......+|.. +.+++|+|++.+|++++. ||.|++|+...
T Consensus 980 ~~~g~i~i~d~~~~---------------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-----dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 980 DEDGAIKIIELPNN---------------RVFSSGVGHKKAVRHIQFTADGKTLISSSE-----DSVIQVWNWQT 1034 (1249)
T ss_dssp ETTSCCEEEETTTT---------------SCEEECCCCSSCCCCEEECSSSSCEEEECS-----SSBEEEEETTT
T ss_pred cCCCCEEEEEcCCC---------------ceeeecccCCCceEEEEECCCCCEEEEEcC-----CCEEEEEECCC
Confidence 99999999999874 23445567776 899999999999999999 99999997654
No 100
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2e-29 Score=245.97 Aligned_cols=211 Identities=20% Similarity=0.395 Sum_probs=177.2
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.....+|...|.++.++ +.+|++|+.|+.+++||..... .....+.+|.. .+.++.|+|++.+|+
T Consensus 182 ~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~-----------~~~~~~~~h~~-~~~~~~~~~~g~~l~ 246 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAE-----------HHVATLSGHSQ-EVCGLRWAPDGRHLA 246 (420)
T ss_dssp EEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSS-----------CEEEEEECCSS-CEEEEEECTTSSEEE
T ss_pred EEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccc-----------eeeEEeccccc-ceeeeeecCCCCeee
Confidence 44556899999999884 5699999999999999988752 44567889997 589999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+++.|+.|++|+...+... ...+.....|...|.+++|+|.+..
T Consensus 247 s~~~D~~v~i~~~~~~~~~------------------------------------~~~~~~~~~~~~~V~~~~~~p~~~~ 290 (420)
T 4gga_A 247 SGGNDNLVNVWPSAPGEGG------------------------------------WVPLQTFTQHQGAVKAVAWCPWQSN 290 (420)
T ss_dssp EEETTSCEEEEESSCCSSC------------------------------------SCCSEEECCCSSCEEEEEECTTCTT
T ss_pred eeeccccceEEeecccccc------------------------------------ceeeeeecccCCceeeeeeCCCccc
Confidence 9999999999999754321 1123556778999999999998878
Q ss_pred EEEEE--ecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEe--CCCcEEEEecCCCCCCCCCCceeee
Q 011709 293 EFCSV--GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 293 ~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs--~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
+++++ +.|++|++||++++. +...+. +...+.++.|+| ++..+++++ .||.|+|||+++ ++++.++
T Consensus 291 ~la~~~gs~D~~I~iwd~~t~~--~~~~~~-~~~~v~~~~~~~-~~~~lv~~sg~~d~~I~iwd~~~------~~~v~~l 360 (420)
T 4gga_A 291 VLATGGGTSDRHIRIWNVCSGA--CLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPT------MAKVAEL 360 (420)
T ss_dssp EEEEEECTTTCEEEEEETTTTE--EEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTT------CCEEEEE
T ss_pred EEEEEeecCCCEEEEEeCCccc--cceeec-cccceeeeeecC-CCCeEEEEEecCCCEEEEEECCC------CcEEEEE
Confidence 77764 579999999999988 555554 456799999999 777777655 689999999998 7899999
Q ss_pred cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
.+|.+.|++++|+|++.+ ||||+.|++|+|||+...
T Consensus 361 ~gH~~~V~~l~~spdg~~-l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 361 KGHTSRVLSLTMSPDGAT-VASAAADETLRLWRCFEL 396 (420)
T ss_dssp CCCSSCEEEEEECTTSSC-EEEEETTTEEEEECCSCS
T ss_pred cCCCCCEEEEEEcCCCCE-EEEEecCCeEEEEECCCC
Confidence 999999999999999996 689999999999999863
No 101
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-29 Score=241.50 Aligned_cols=254 Identities=19% Similarity=0.229 Sum_probs=198.1
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|+- ..|..+ ..+..+.||++.... ........+|.+.|++
T Consensus 13 ~v~~~~~s~~~--------~~l~~~-----~~dg~i~iw~~~~~~-------------------~~~~~~~~~h~~~v~~ 60 (379)
T 3jrp_A 13 LIHDAVLDYYG--------KRLATC-----SSDKTIKIFEVEGET-------------------HKLIDTLTGHEGPVWR 60 (379)
T ss_dssp CEEEEEECSSS--------SEEEEE-----ETTSCEEEEEEETTE-------------------EEEEEEECCCSSCEEE
T ss_pred cEEEEEEcCCC--------CEEEEE-----ECCCcEEEEecCCCc-------------------ceeeeEecCCCCcEEE
Confidence 67788888852 234322 257789999875210 0113344579999999
Q ss_pred EEecCC-CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCcEEEecCCCcEEE
Q 011709 146 IRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSGGKDKSVVL 222 (479)
Q Consensus 146 l~~~p~-~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~l~s~s~dg~i~v 222 (479)
++|++. ++.+|++|+.||.|+|||+.++. ......+.+|.. .|.+++|+|+ +.+|++++.||.|++
T Consensus 61 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----------~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~d~~i~v 129 (379)
T 3jrp_A 61 VDWAHPKFGTILASCSYDGKVLIWKEENGR----------WSQIAVHAVHSA-SVNSVQWAPHEYGPLLLVASSDGKVSV 129 (379)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEEETTE----------EEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred EEeCCCCCCCEEEEeccCCEEEEEEcCCCc----------eeEeeeecCCCc-ceEEEEeCCCCCCCEEEEecCCCcEEE
Confidence 999873 38899999999999999998861 125566777886 5899999999 899999999999999
Q ss_pred EecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC-------------
Q 011709 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS------------- 289 (479)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------------- 289 (479)
||+..... .....+.+|...|.+++|+|.
T Consensus 130 ~d~~~~~~--------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T 3jrp_A 130 VEFKENGT--------------------------------------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 171 (379)
T ss_dssp EECCTTSC--------------------------------------CCEEEEECCTTCEEEEEECCCC----------CT
T ss_pred EecCCCCc--------------------------------------eeeEEecCCCCceEEEEEcCccccccccccCCCC
Confidence 99975322 112456679999999999994
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCCC--ceeeeccCCCCeEEEEecCCC---CcEEEEEeCCCcEEEEecCCCCCCCCCCc
Q 011709 290 SAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGSP 364 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~sp~~---~~~l~tgs~dg~I~iwd~~~~~~~~~~~~ 364 (479)
+ .+|++++.||.|++||++++... ....+.+|...|.+++|+| + +.+|++++.||.|++||++...... ...
T Consensus 172 ~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~ 248 (379)
T 3jrp_A 172 S-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYLASVSQDRTCIIWTQDNEQGPW-KKT 248 (379)
T ss_dssp T-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEETTSCEEEEEESSTTSCC-EEE
T ss_pred C-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC-CCCCCCeEEEEeCCCEEEEEeCCCCCccc-eee
Confidence 5 78999999999999999877632 3456678999999999999 7 8999999999999999999732100 012
Q ss_pred eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 365 ~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
+.....|...|++++|+|++++ |++++.||.|+|||+..
T Consensus 249 ~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 249 LLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENL 287 (379)
T ss_dssp ESSSSCCSSCEEEEEECSSSCC-EEEEESSSSEEEEEEEE
T ss_pred eeccccCCCcEEEEEEcCCCCE-EEEecCCCcEEEEeCCC
Confidence 2233458899999999999996 67999999999999985
No 102
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=5.8e-29 Score=243.46 Aligned_cols=228 Identities=20% Similarity=0.383 Sum_probs=185.7
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC-CCCcE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYV 211 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-~~~~l 211 (479)
.....+|.+.|++++|+|....+|++|+.||.|+|||+........ .......+.+|.. .|.+++|+| ++.+|
T Consensus 174 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~h~~-~v~~v~~~p~~~~~l 247 (430)
T 2xyi_A 174 DLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR-----VIDAKNIFTGHTA-VVEDVAWHLLHESLF 247 (430)
T ss_dssp SEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG-----EEECSEEECCCSS-CEEEEEECSSCTTEE
T ss_pred cEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc-----eeccceeecCCCC-CEeeeEEeCCCCCEE
Confidence 4556689999999999995555999999999999999987522110 1123566778887 599999999 56788
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
++++.||.|++||+++... ..++..+..|...|++++|+|++.
T Consensus 248 ~s~~~dg~i~i~d~~~~~~-------------------------------------~~~~~~~~~~~~~v~~i~~~p~~~ 290 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNT-------------------------------------SKPSHTVDAHTAEVNCLSFNPYSE 290 (430)
T ss_dssp EEEETTSEEEEEETTCSCS-------------------------------------SSCSEEEECCSSCEEEEEECSSCT
T ss_pred EEEeCCCeEEEEECCCCCC-------------------------------------CcceeEeecCCCCeEEEEeCCCCC
Confidence 9999999999999975321 122356678999999999999997
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC--------CCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG--------VGS 363 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~--------~~~ 363 (479)
.+|++|+.||.|++||+++... .+..+..|...|.+++|+|.+..+|++++.||.|+|||++...... ...
T Consensus 291 ~~l~tg~~dg~v~vwd~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 369 (430)
T 2xyi_A 291 FILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 369 (430)
T ss_dssp TEEEEEETTSEEEEEETTCTTS-CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTT
T ss_pred CEEEEEeCCCeEEEEeCCCCCC-CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcc
Confidence 7899999999999999998553 4666778999999999999444689999999999999998733111 025
Q ss_pred ceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 364 ~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.+..+.+|...|++++|+|+++++|++++.||.|+||++..
T Consensus 370 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 370 LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred eEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 67778899999999999999997889999999999999976
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.3e-29 Score=245.93 Aligned_cols=254 Identities=13% Similarity=0.059 Sum_probs=196.6
Q ss_pred cCCCceeEEEecCCCCcE-EEEEeCCCcEEEEECC--CCCCccccCCCCCCCCcEEEe--ccCCCceeeeeecCCCCcEE
Q 011709 138 IHPGEVNRIRELPQNTKI-VATHTDSPDVLIWDVE--AQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~-lat~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~l~~s~~~~~l~ 212 (479)
+|.+.|++++|+| ++.+ +|+|+.||.|+|||+. ++ .....+. .|.. .|++++|+|++++|+
T Consensus 100 ~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~------------~~~~~~~~~~~~~-~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 100 PIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSK------------NVLKLRKRFCFSK-RPNAISIAEDDTTVI 165 (450)
T ss_dssp CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSS------------SCEEEEEEEECSS-CEEEEEECTTSSEEE
T ss_pred ccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCC------------ceeeeeecccCCC-CceEEEEcCCCCEEE
Confidence 6778999999999 5666 5999999999999998 55 4455555 4554 589999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC---
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--- 289 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--- 289 (479)
+|+.||.|++|++.+..... .+...+.+|...|.+++|+|+
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~------------------------------------~~~~~~~~h~~~v~~~~~sp~~~~ 209 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEK------------------------------------FTQEPILGHVSMLTDVHLIKDSDG 209 (450)
T ss_dssp EEETTSEEEEEETTSCCCSS------------------------------------CCCCCSEECSSCEEEEEEEECTTS
T ss_pred EEeCCCcEEEEecCCccccc------------------------------------ccceeeecccCceEEEEEcCCCCC
Confidence 99999999999997543210 012356779999999999999
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCCCceee-eccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee
Q 011709 290 SAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
+ .+|++++.|+.|++||++++. .+.. +.+|...|.+++|+ ++.+|++|+.|+.|++||+++ ++++..+
T Consensus 210 ~-~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~------~~~~~~~ 278 (450)
T 2vdu_B 210 H-QFIITSDRDEHIKISHYPQCF--IVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKT------GKNLSTF 278 (450)
T ss_dssp C-EEEEEEETTSCEEEEEESCTT--CEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTT------CCEEEEE
T ss_pred C-cEEEEEcCCCcEEEEECCCCc--eeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCC------CcEeeee
Confidence 7 789999999999999999887 4544 56899999999999 789999999999999999998 6677666
Q ss_pred cC-------------------------CCCcEEEEEEecCCCcEEEEEe-CCCCEEEEeC--CCCCccccCCCCCCCCCC
Q 011709 369 EG-------------------------HSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDY--EKVGKKVEQGPRTTNYPA 420 (479)
Q Consensus 369 ~~-------------------------h~~~v~~l~~~p~~~~llas~s-~Dg~v~iwd~--~~~~~~~~~~~~~~~~~~ 420 (479)
.. +...|.+++|+|+++++ ++++ .|+.|+|||+ ... ...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~~d~~i~iw~~~~~~~------------~~l 345 (450)
T 2vdu_B 279 DYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV-AFFVEATKCIIILEMSEKQK------------GDL 345 (450)
T ss_dssp ECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE-EEEETTCSEEEEEEECSSST------------TCE
T ss_pred cchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE-EEEECCCCeEEEEEeccCCC------------Cce
Confidence 53 23579999999999965 4555 8999999999 331 112
Q ss_pred eeEEEeCCCCCceeEEEecCCCeeeecCCCc-cccceeEEEEeecc
Q 011709 421 GLFFQHAGHSPSSSIKFVLRESCLVDNNHGL-SYANKKIKIYCHLE 465 (479)
Q Consensus 421 ~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~-~~~d~~i~i~~~~~ 465 (479)
..+....+|..+.+++|+|++.+++.++... +..+..|++|....
T Consensus 346 ~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 346 ALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred eeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 3445566777799999999654444443210 11255688886543
No 104
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=9.7e-30 Score=250.22 Aligned_cols=273 Identities=16% Similarity=0.284 Sum_probs=215.5
Q ss_pred EEEecCCCce-eEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 134 HKTIIHPGEV-NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 134 ~~~~~h~~~V-~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
....+|.+.| .++.+ ++++||+|+.||+|++||+.++ +....+.+|.. .|.+++|+ +++|+
T Consensus 112 ~~l~~h~~~v~~~~~~---~g~~l~sg~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~--~~~l~ 173 (445)
T 2ovr_B 112 KVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTG------------KCLRTLVGHTG-GVWSSQMR--DNIII 173 (445)
T ss_dssp EEEECSTTSCEEEEEE---ETTEEEEEETTSCEEEEETTTC------------CEEEECCCCSS-CEEEEEEE--TTEEE
T ss_pred EEecccCCCcEEEEEE---cCCEEEEEECCCcEEEEECCCC------------cEEEEEcCCCC-CEEEEEec--CCEEE
Confidence 4456898875 55555 5679999999999999999887 56677889987 58999997 56899
Q ss_pred EecCCCcEEEEecCCCccccccCCccc--ccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATA--KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
+|+.||+|++||+.++........... ......... ......++.+.+|+......+..+.+|...|.+++| ++
T Consensus 174 s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~--l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 174 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249 (445)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTE--EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred EEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCE--EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence 999999999999987654322211100 000000111 112235678888999988888999999999999999 45
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 370 (479)
.++++++.||.|++||+++++ .+..+.+|...|.+++| ++.++++|+.||.|++||+++ ++++..+.+
T Consensus 250 -~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~ 317 (445)
T 2ovr_B 250 -RRVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVET------GNCIHTLTG 317 (445)
T ss_dssp -SCEEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTT------CCEEEEECC
T ss_pred -CEEEEEcCCCEEEEEECCCCc--EeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCC------CCEEEEEcC
Confidence 679999999999999999887 67788899999999999 568999999999999999998 788999999
Q ss_pred CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC---CCC-ceeEEEecCCCeeee
Q 011709 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG---HSP-SSSIKFVLRESCLVD 446 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g---h~~-~~~~~~sp~~~~l~~ 446 (479)
|...+.++.+++ . +|++++.||.|++||++.+ ..+....+ |.. +.+++|+ +.+|++
T Consensus 318 ~~~~v~~~~~~~--~-~l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 377 (445)
T 2ovr_B 318 HQSLTSGMELKD--N-ILVSGNADSTVKIWDIKTG---------------QCLQTLQGPNKHQSAVTCLQFN--KNFVIT 377 (445)
T ss_dssp CCSCEEEEEEET--T-EEEEEETTSCEEEEETTTC---------------CEEEEECSTTSCSSCEEEEEEC--SSEEEE
T ss_pred CcccEEEEEEeC--C-EEEEEeCCCeEEEEECCCC---------------cEEEEEccCCCCCCCEEEEEEC--CCEEEE
Confidence 999999998864 4 5789999999999999874 22223333 544 8889985 579999
Q ss_pred cCCCccccceeEEEEeecc
Q 011709 447 NNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 447 ~~~~~~~~d~~i~i~~~~~ 465 (479)
++. ||.|++|+...
T Consensus 378 ~~~-----dg~v~iwd~~~ 391 (445)
T 2ovr_B 378 SSD-----DGTVKLWDLKT 391 (445)
T ss_dssp EET-----TSEEEEEETTT
T ss_pred EeC-----CCeEEEEECCC
Confidence 998 99999998653
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=249.02 Aligned_cols=265 Identities=12% Similarity=0.060 Sum_probs=192.7
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCC---CccccCCCCC---------------------------------
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP---NRHAVLGATN--------------------------------- 184 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~---~~~~~~~~~~--------------------------------- 184 (479)
.++.+++|+| ++++|++++ ++.|++||+.++. ..........
T Consensus 5 ~p~~~v~~s~-dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSR-DGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECS-SSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecC-CCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4789999999 667766664 6799999998875 2111100000
Q ss_pred ---------CCCcEEEeccCCCceeeeeecCCCCcE-EEecCCCcEEEEecC--CCccccccCCcccccCCCCCceeecC
Q 011709 185 ---------SRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQ--DHITSSATDPATAKSAGSSGSIIKQS 252 (479)
Q Consensus 185 ---------~~~~~~~~~h~~~~v~~l~~s~~~~~l-~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (479)
........+|.+ .|++++|+|++++| ++|+.||.|++||+. ++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---------------------- 139 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYS-YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---------------------- 139 (450)
T ss_dssp -----------------CCCC-CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC----------------------
T ss_pred cccccCccccCCCCCCCccCC-ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce----------------------
Confidence 000111234544 58999999999986 899999999999997 3221
Q ss_pred CCCCCCCCCCCCCCCCCCceeec--CCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCC--ceeeeccCCCCeEE
Q 011709 253 PKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHC 328 (479)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~ 328 (479)
+..+. .|...|.+++|+|++ .+|++++.||.|++||+.++... ....+.+|...|++
T Consensus 140 ------------------~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 200 (450)
T 2vdu_B 140 ------------------LKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTD 200 (450)
T ss_dssp ------------------EEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEE
T ss_pred ------------------eeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEE
Confidence 23343 567889999999999 78999999999999999887632 22356789999999
Q ss_pred EEecCCC---CcEEEEEeCCCcEEEEecCCCCCCCCCCceee-ecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 329 VDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 329 l~~sp~~---~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++|+| + +.+|++|+.|+.|++||++. +..+.. +.+|...|++++|+ ++. +|++++.|+.|+|||++.
T Consensus 201 ~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~------~~~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~ 271 (450)
T 2vdu_B 201 VHLIK-DSDGHQFIITSDRDEHIKISHYPQ------CFIVDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKT 271 (450)
T ss_dssp EEEEE-CTTSCEEEEEEETTSCEEEEEESC------TTCEEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTT
T ss_pred EEEcC-CCCCCcEEEEEcCCCcEEEEECCC------CceeeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCC
Confidence 99999 8 89999999999999999998 667776 66899999999999 888 578999999999999988
Q ss_pred CCccccCCCCC---------CCCCCeeEEEe---CCCCCceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 405 VGKKVEQGPRT---------TNYPAGLFFQH---AGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 405 ~~~~~~~~~~~---------~~~~~~l~~~~---~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
+. ........ ...++...... .....+.+++|+|++.+|++++.+ ++.|++|+.
T Consensus 272 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~----d~~i~iw~~ 337 (450)
T 2vdu_B 272 GK-NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA----TKCIIILEM 337 (450)
T ss_dssp CC-EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT----CSEEEEEEE
T ss_pred Cc-EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC----CCeEEEEEe
Confidence 42 22111000 00000000000 112348899999999999999843 899999998
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.1e-30 Score=248.21 Aligned_cols=243 Identities=10% Similarity=0.070 Sum_probs=184.5
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccc-----------cCC------CCCCCCcEEEe-ccCCCce
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA-----------VLG------ATNSRPDLILT-GHQDNAE 199 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~-----------~~~------~~~~~~~~~~~-~h~~~~v 199 (479)
.-...|.+++|+| ||.++||++.|++|+ |......... ..+ .........+. .|. ..|
T Consensus 13 ~~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~-~~V 88 (588)
T 2j04_A 13 EFEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPV-CYP 88 (588)
T ss_dssp CCSSSSCCEEECT-TSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCS-CCE
T ss_pred HhhccEEEEEECC-CCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCC-CcE
Confidence 4457899999999 999999999999998 6444432210 000 00001111122 444 469
Q ss_pred eeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 011709 200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 279 (479)
Q Consensus 200 ~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (479)
.+++|+|+|.+||+++.||.|++||... .+..+. |..
T Consensus 89 ~~vawSPdG~~LAs~s~dg~V~iwd~~~------------------------------------------~l~~l~-~~~ 125 (588)
T 2j04_A 89 RVCKPSPIDDWMAVLSNNGNVSVFKDNK------------------------------------------MLTNLD-SKG 125 (588)
T ss_dssp EEEEECSSSSCEEEEETTSCEEEEETTE------------------------------------------EEEECC-CSS
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCc------------------------------------------eeeecc-CCC
Confidence 9999999999999999999999999643 012333 443
Q ss_pred -----ceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCC--C---ceeee----ccCCCCeEEEEecCCCCcEEEEEeCC
Q 011709 280 -----TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS--P---VIKVE----KAHDADLHCVDWNPLDDNLILTGSAD 345 (479)
Q Consensus 280 -----~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~---~~~~~----~~~~~~v~~l~~sp~~~~~l~tgs~d 345 (479)
.|.+++|+|+| ++|++|+.||+|++||+.++.. + .+..+ .+|...|.+++|+| ++ +++++.|
T Consensus 126 ~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D 201 (588)
T 2j04_A 126 NLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSN 201 (588)
T ss_dssp CSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETT
T ss_pred ccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCC
Confidence 59999999999 7899999999999999998752 1 23444 57888999999999 77 8899999
Q ss_pred CcEEEEecCCCCCCCCCC---ceeee-cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCe
Q 011709 346 NSVRMFDRRNLTSNGVGS---PINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG 421 (479)
Q Consensus 346 g~I~iwd~~~~~~~~~~~---~~~~~-~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 421 (479)
++|++||+.. +. ...++ .+|...|.+++|+ +. .||+++ +++|++||+... .
T Consensus 202 ~tVrlWd~~~------~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~---------------~ 256 (588)
T 2j04_A 202 NSVFSMTVSA------SSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNY---------------S 256 (588)
T ss_dssp CCEEEECCCS------SSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTT---------------E
T ss_pred CeEEEEECCC------CccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCC---------------e
Confidence 9999999987 33 23456 4788999999999 45 577887 799999999873 3
Q ss_pred e-EEEeCCCCC-ceeEEE--ecCCCeeeecCCCccccceeEEEEee
Q 011709 422 L-FFQHAGHSP-SSSIKF--VLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 422 l-~~~~~gh~~-~~~~~~--sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
+ .+.. ||.. +.+++| +|++..|++++. +|. ++|..
T Consensus 257 ~~~~~~-gh~~~V~~va~~~s~d~~~La~a~e-----dG~-klw~~ 295 (588)
T 2j04_A 257 ISSLKT-GSLENFHIIPLNHEKESTILLMSNK-----TSY-KVLLE 295 (588)
T ss_dssp EEEEEC-SCCSCCCEEEETTCSSCEEEEECSS-----CEE-EEEES
T ss_pred EEEEEc-CCCceEEEEEeeeCCCCCEEEEEcC-----CCC-EEEee
Confidence 3 3333 6777 999999 999999999998 889 88864
No 107
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4e-29 Score=238.81 Aligned_cols=276 Identities=19% Similarity=0.247 Sum_probs=215.5
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|+- ..|+.+ ..+..+.||++.... ......+|.+.|.+
T Consensus 34 ~v~~~~~s~~~--------~~l~~~-----~~dg~i~vwd~~~~~---------------------~~~~~~~h~~~v~~ 79 (369)
T 3zwl_B 34 PLTQVKYNKEG--------DLLFSC-----SKDSSASVWYSLNGE---------------------RLGTLDGHTGTIWS 79 (369)
T ss_dssp CEEEEEECTTS--------CEEEEE-----ESSSCEEEEETTTCC---------------------EEEEECCCSSCEEE
T ss_pred eEEEEEEcCCC--------CEEEEE-----eCCCEEEEEeCCCch---------------------hhhhhhhcCCcEEE
Confidence 67788898852 233333 256788888643110 13344579999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC-----CcE
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD-----KSV 220 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d-----g~i 220 (479)
++|+| ++++|++++.||.|++||+.++ +....+. |.. .+.+++|+|++++|++++.+ |.|
T Consensus 80 ~~~~~-~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~-~~~-~v~~~~~~~~~~~l~~~~~~~~~~~g~i 144 (369)
T 3zwl_B 80 IDVDC-FTKYCVTGSADYSIKLWDVSNG------------QCVATWK-SPV-PVKRVEFSPCGNYFLAILDNVMKNPGSI 144 (369)
T ss_dssp EEECT-TSSEEEEEETTTEEEEEETTTC------------CEEEEEE-CSS-CEEEEEECTTSSEEEEEECCBTTBCCEE
T ss_pred EEEcC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEee-cCC-CeEEEEEccCCCEEEEecCCccCCCCEE
Confidence 99999 8889999999999999999887 4455555 554 58999999999999999998 999
Q ss_pred EEEecCCCccccccCC-----------------cccccCCCCCceeecCCCCCCCCCCCCCCCC-CCCceeecCCCCceE
Q 011709 221 VLWSIQDHITSSATDP-----------------ATAKSAGSSGSIIKQSPKPGDGNDKAADGPS-VGPRGIYNGHEDTVE 282 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~ 282 (479)
++||+........... ............+.. ...++.+.+|+... ...+..+..|...|.
T Consensus 145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 222 (369)
T 3zwl_B 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA--GHKDGKISKYDVSNNYEYVDSIDLHEKSIS 222 (369)
T ss_dssp EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEE--EETTSEEEEEETTTTTEEEEEEECCSSCEE
T ss_pred EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEE--EcCCCEEEEEECCCCcEeEEEEecCCCcee
Confidence 9999986543211100 000001111111111 23456788888887 677788889999999
Q ss_pred EEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC--------------cE
Q 011709 283 DVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--------------SV 348 (479)
Q Consensus 283 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg--------------~I 348 (479)
+++|+|++ .+|++++.||.|++||+++++ ....+. +...+.+++|+| ++.++++++.++ .|
T Consensus 223 ~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~--~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i 297 (369)
T 3zwl_B 223 DMQFSPDL-TYFITSSRDTNSFLVDVSTLQ--VLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEA 297 (369)
T ss_dssp EEEECTTS-SEEEEEETTSEEEEEETTTCC--EEEEEE-CSSCEEEEEECS-SSSEEEEEECCC-------------CEE
T ss_pred EEEECCCC-CEEEEecCCceEEEEECCCCc--eeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCccee
Confidence 99999998 789999999999999999988 555553 888999999999 999999999998 89
Q ss_pred EEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++||++. ++++..+.+|...|++++|+|+++ +|++++.||.|+|||++.
T Consensus 298 ~~~d~~~------~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 298 RFYHKIF------EEEIGRVQGHFGPLNTVAISPQGT-SYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEEETTT------CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEEECH
T ss_pred EEEecCC------CcchhheecccCcEEEEEECCCCC-EEEEEcCCCeEEEEECcc
Confidence 9999998 788999999999999999999998 578999999999999987
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=7.2e-30 Score=243.26 Aligned_cols=290 Identities=14% Similarity=0.091 Sum_probs=196.9
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE-EEe
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSG 214 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l-~s~ 214 (479)
...|.+.|++++|+| ++.+||+|+.+| ++|||+... ..... .+.. .+..+++.++++.+ ++|
T Consensus 15 ~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~------------~~~~~--~~~~-~~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPV------------AHIMS--QEMR-HLSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp ----CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTE------------EEEEE--EECS-CCCEEEECTTSSEEEEEC
T ss_pred cccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCc------------ceeee--eecC-CeEEEEEcCCCCEEEEEE
Confidence 357999999999999 888999998875 789998765 22222 2222 26788898888866 578
Q ss_pred cCCCcEEEEecCCCccccccCCcc-c--ccCCCCCceeecCCCCCCCCCCCCCCCCC-CCceeecCCCCceEEEEEeeCC
Q 011709 215 GKDKSVVLWSIQDHITSSATDPAT-A--KSAGSSGSIIKQSPKPGDGNDKAADGPSV-GPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
+.|++|++||+.++.......... . ...... .+... .++.+.+|+.... ..+..+.. ....+++++ .
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~---~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~ 148 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIVVS---YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-G 148 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEEEE---ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-T
T ss_pred CCccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEEEE---EcCEEEEEECCCCceeeEEecc---CCceEEEEc-c
Confidence 888999999998765432221100 0 001111 11111 2445667776665 55555544 444566666 2
Q ss_pred CcEEEE-EecCCeEEEEeCCCCC--------------CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCc-EEEEecC
Q 011709 291 AQEFCS-VGDDSCLILWDARVGT--------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-VRMFDRR 354 (479)
Q Consensus 291 ~~~l~s-~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~-I~iwd~~ 354 (479)
.+.++ ++.||.|++||++++. .+.+..+.+|...|++++|+| ++.+|++|+.||+ |+|||++
T Consensus 149 -~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~ 226 (355)
T 3vu4_A 149 -LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTE 226 (355)
T ss_dssp -EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETT
T ss_pred -EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECC
Confidence 33333 6899999999999754 112567789999999999999 9999999999998 9999999
Q ss_pred CCCCCCCCCceeeec-C-CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCC--------CCCCCCCCee-E
Q 011709 355 NLTSNGVGSPINKFE-G-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG--------PRTTNYPAGL-F 423 (479)
Q Consensus 355 ~~~~~~~~~~~~~~~-~-h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~--------~~~~~~~~~l-~ 423 (479)
+ ++++..+. + |...|++++|+|++.+ |++++.|++|+|||++......... .......... .
T Consensus 227 ~------~~~~~~~~~g~h~~~v~~~~~s~~~~~-l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (355)
T 3vu4_A 227 D------GVLVREFRRGLDRADVVDMKWSTDGSK-LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK 299 (355)
T ss_dssp T------CCEEEEEECTTCCSCEEEEEECTTSCE-EEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEE
T ss_pred C------CcEEEEEEcCCCCCcEEEEEECCCCCE-EEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEE
Confidence 8 78899998 5 9999999999999994 7899999999999998742111000 0000000011 1
Q ss_pred EEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 424 FQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 424 ~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
+....+.....++|++++.+|++++. ||.+++|+...
T Consensus 300 ~~~~~~~~~~~~a~~~d~~~l~~~~~-----dg~~~~~~~~~ 336 (355)
T 3vu4_A 300 LSVDKHVRGCKIAWISESSLVVVWPH-----TRMIETFKVVF 336 (355)
T ss_dssp CCCCTTCCCCEEEESSSSEEEEEETT-----TTEEEEEEEEE
T ss_pred eccCCCCCceEEEEeCCCCEEEEEeC-----CCeEEEEEEEc
Confidence 11111223577999999999999998 99999997554
No 109
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=269.12 Aligned_cols=263 Identities=12% Similarity=0.092 Sum_probs=192.6
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.....+|.+.|++++|+| ++.+||+|+.||+|+|||..+. .... ...|.. .|.+++|+| |++|+
T Consensus 10 ~~~~~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~------------~~~~-~~~~~~-~V~~l~fsp-g~~L~ 73 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQV------------EVVI-KLEDRS-AIKEMRFVK-GIYLV 73 (902)
T ss_dssp EEEEEECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTC------------EEEE-ECSSCC-CEEEEEEET-TTEEE
T ss_pred cccccCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCc------------EEEE-EcCCCC-CEEEEEEcC-CCEEE
Confidence 455679999999999999 8889999999999999998765 2222 223554 699999999 88999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+++.|++|++||+.++.. +..+. |...|++++|+|++ .
T Consensus 74 S~s~D~~v~lWd~~~~~~----------------------------------------~~~~~-~~~~V~~v~~sp~g-~ 111 (902)
T 2oaj_A 74 VINAKDTVYVLSLYSQKV----------------------------------------LTTVF-VPGKITSIDTDASL-D 111 (902)
T ss_dssp EEETTCEEEEEETTTCSE----------------------------------------EEEEE-CSSCEEEEECCTTC-S
T ss_pred EEECcCeEEEEECCCCcE----------------------------------------EEEEc-CCCCEEEEEECCCC-C
Confidence 999999999999975432 13343 66789999999999 7
Q ss_pred EEEEEecCCeEEEEeCCCCCCCce---------eeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVI---------KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 363 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~ 363 (479)
++++|+.||.|++||++++..... ....+|.+.|.+++|+|.++.+|++|+.||.| +||++. ++
T Consensus 112 ~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~------~~ 184 (902)
T 2oaj_A 112 WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE------NE 184 (902)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT------TE
T ss_pred EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC------Cc
Confidence 899999999999999998762100 23357899999999999546899999999999 999998 66
Q ss_pred ceeeecCC------------------CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccC--C-CCCCCCCC-e
Q 011709 364 PINKFEGH------------------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ--G-PRTTNYPA-G 421 (479)
Q Consensus 364 ~~~~~~~h------------------~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~--~-~~~~~~~~-~ 421 (479)
++..+..| ...|++++|+|++. +||+++.||.|+|||++++ +++.. . ......+. .
T Consensus 185 ~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g-~~~~~r~l~~~~~~~~~~~ 262 (902)
T 2oaj_A 185 IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSG-HMIMARTVFETEINVPQPD 262 (902)
T ss_dssp EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTC-CEEEEECSSCSCTTSCCTT
T ss_pred eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC-cEEEEEeecccccCCCCCc
Confidence 77666655 57899999999998 5789999999999999884 33211 0 00000000 0
Q ss_pred eEEEeCCCC-CceeEEEec----CC-CeeeecCCCccccceeEEEEe
Q 011709 422 LFFQHAGHS-PSSSIKFVL----RE-SCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 422 l~~~~~gh~-~~~~~~~sp----~~-~~l~~~~~~~~~~d~~i~i~~ 462 (479)
.......|. .|.+++|++ ++ ..|++++.+-....+.+.+|+
T Consensus 263 ~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 263 YIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp CCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred CCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence 000000234 489999964 43 456666552111124677776
No 110
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-29 Score=261.23 Aligned_cols=256 Identities=19% Similarity=0.236 Sum_probs=201.5
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|+- ..+..| +.+..+.||++.... ........+|.++|++
T Consensus 11 ~V~~l~~s~dg--------~~latg-----~~dg~I~vwd~~~~~-------------------~~~~~~l~~h~~~V~~ 58 (753)
T 3jro_A 11 LIHDAVLDYYG--------KRLATC-----SSDKTIKIFEVEGET-------------------HKLIDTLTGHEGPVWR 58 (753)
T ss_dssp CEEEECCCSSS--------CCEEEE-----ETTTEEEEEEEETTE-------------------EEEEEEECCCSSCEEE
T ss_pred eeEEEEECCCC--------CeEEEE-----ECCCcEEEEecCCCC-------------------CccceeccCCcCceEE
Confidence 77888888852 233322 367889999865110 0113345589999999
Q ss_pred EEecCC-CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC--CCcEEEecCCCcEEE
Q 011709 146 IRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSGGKDKSVVL 222 (479)
Q Consensus 146 l~~~p~-~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~--~~~l~s~s~dg~i~v 222 (479)
++|+|+ ++++|++|+.||+|++||+.++ .......+.+|.. .|++++|+|+ +..|++|+.||.|++
T Consensus 59 l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~----------~~~~~~~~~~h~~-~V~~v~~sp~~~~~~l~sgs~dg~I~v 127 (753)
T 3jro_A 59 VDWAHPKFGTILASCSYDGKVLIWKEENG----------RWSQIAVHAVHSA-SVNSVQWAPHEYGPLLLVASSDGKVSV 127 (753)
T ss_dssp EEECCTTSCSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred EEecCCCCCCEEEEEeCCCeEEEEECCCC----------cccccccccCCCC-CeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence 999983 2889999999999999999876 1125567788887 5999999999 999999999999999
Q ss_pred EecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC-------------
Q 011709 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS------------- 289 (479)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------------- 289 (479)
||+.+.... ....+.+|...|.+++|+|.
T Consensus 128 wdl~~~~~~--------------------------------------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d 169 (753)
T 3jro_A 128 VEFKENGTT--------------------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 169 (753)
T ss_dssp EECCSSSCC--------------------------------------CCEEEECCSSCEEEEEECCCC---------CGG
T ss_pred EEeecCCCc--------------------------------------ceeEeecCCCceEEEEecCcccccccccccCCC
Confidence 999754221 12456789999999999994
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCC--CceeeeccCCCCeEEEEecCCC---CcEEEEEeCCCcEEEEecCCCCCCCCCCc
Q 011709 290 SAQEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGSP 364 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~---~~~l~tgs~dg~I~iwd~~~~~~~~~~~~ 364 (479)
+ .++++|+.||.|++||++++.. .....+.+|...|++++|+| + +.+|++|+.||.|++||++...... ...
T Consensus 170 ~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~-~~~ 246 (753)
T 3jro_A 170 S-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYLASVSQDRTCIIWTQDNEQGPW-KKT 246 (753)
T ss_dssp G-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEESSSCEEEEEESSSSSCC-BCC
T ss_pred C-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc-CCCCCCEEEEEecCCEEEEecCCCCCCcc-eeE
Confidence 5 6899999999999999998752 24556678999999999999 7 8999999999999999999732100 113
Q ss_pred eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCC
Q 011709 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 406 (479)
Q Consensus 365 ~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~ 406 (479)
+.....|...|++++|+|++.+ |++++.||.|+|||+...+
T Consensus 247 ~~~~~~~~~~v~~l~~spdg~~-l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 247 LLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp BSSSSCCSSCCCCEEECTTTCC-EEEECSSSCEECCBCCSSS
T ss_pred EeccCCCCCceEEEEEcCCCCE-EEEEcCCCEEEEEecCCCC
Confidence 4445668899999999999996 6799999999999998643
No 111
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9e-29 Score=230.96 Aligned_cols=258 Identities=19% Similarity=0.243 Sum_probs=198.0
Q ss_pred CCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCC
Q 011709 96 SVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN 175 (479)
Q Consensus 96 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~ 175 (479)
+.+..+.+|++... ........|.+.|.+++|+| ++.+|++|+.||.|++|++....
T Consensus 36 ~~dg~v~vw~~~~~---------------------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~- 92 (313)
T 3odt_A 36 SRDGTVRLWSKDDQ---------------------WLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATS- 92 (313)
T ss_dssp ETTSEEEEEEESSS---------------------EEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCT-
T ss_pred EcCCcEEEEECCCC---------------------EEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecC-
Confidence 36788999976321 11344567899999999999 88899999999999999998752
Q ss_pred ccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCccc---ccCCCCCceeecC
Q 011709 176 RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATA---KSAGSSGSIIKQS 252 (479)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 252 (479)
.......+.+|.. .|.+++| ++++|++++.||.|++||............... .........+..
T Consensus 93 --------~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~- 160 (313)
T 3odt_A 93 --------GEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLT- 160 (313)
T ss_dssp --------TSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEE-
T ss_pred --------CCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEE-
Confidence 2245667888987 5899999 577999999999999999332211111111000 000101111111
Q ss_pred CCCCCCCCCCCCCCCCCCceeecC-CCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEe
Q 011709 253 PKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 331 (479)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 331 (479)
...++.+.+|+ .......+.. |...|.+++|+|++ . +++++.||.|++||+++++ .+..+..|...|++++|
T Consensus 161 -~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~ 233 (313)
T 3odt_A 161 -ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGD--VLRTYEGHESFVYCIKL 233 (313)
T ss_dssp -EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEE
T ss_pred -EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchh--hhhhhhcCCceEEEEEE
Confidence 12456677777 3344556666 89999999999998 4 9999999999999999988 67788899999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 332 sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+| ++ .|++|+.||.|++||+++ ++++..+..|...|.+++|+|++. + ++++.||.|++||++..
T Consensus 234 ~~-~~-~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 234 LP-NG-DIVSCGEDRTVRIWSKEN------GSLKQVITLPAISIWSVDCMSNGD-I-IVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp CT-TS-CEEEEETTSEEEEECTTT------CCEEEEEECSSSCEEEEEECTTSC-E-EEEETTSCEEEEESCGG
T ss_pred ec-CC-CEEEEecCCEEEEEECCC------CceeEEEeccCceEEEEEEccCCC-E-EEEeCCCcEEEEeCCCC
Confidence 99 77 689999999999999998 788999999999999999999998 4 47889999999999874
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-28 Score=233.65 Aligned_cols=240 Identities=10% Similarity=0.042 Sum_probs=173.6
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEe-ccCCCceeeeeecC--CCCcEEEecC
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCP--TEPYVLSGGK 216 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~l~~s~--~~~~l~s~s~ 216 (479)
.+.|.++.|+|. +++|+.|++|++|+......... .........+. +|.+ .|.+++|+| ++++|++|+.
T Consensus 76 ~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~---~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~s~ 147 (343)
T 3lrv_A 76 TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILD---SKTNKVLREIEVDSAN-EIIYMYGHNEVNTEYFIWADN 147 (343)
T ss_dssp EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEE---TTTCCEEEEEECCCSS-CEEEEECCC---CCEEEEEET
T ss_pred cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEee---cCCcceeEEeecCCCC-CEEEEEcCCCCCCCEEEEEeC
Confidence 467888889884 99999999999998874311100 00112233333 5555 599999999 9999999999
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee-cCCCCceEEEEEeeCCCcEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~ 295 (479)
||+|++||++++... ... ..|...|.+++|+|++ .+|+
T Consensus 148 dg~i~~wd~~~~~~~----------------------------------------~~~~~~~~~~i~~~~~~pdg-~~la 186 (343)
T 3lrv_A 148 RGTIGFQSYEDDSQY----------------------------------------IVHSAKSDVEYSSGVLHKDS-LLLA 186 (343)
T ss_dssp TCCEEEEESSSSCEE----------------------------------------EEECCCSSCCCCEEEECTTS-CEEE
T ss_pred CCcEEEEECCCCcEE----------------------------------------EEEecCCCCceEEEEECCCC-CEEE
Confidence 999999999764331 222 2355579999999998 7899
Q ss_pred EEecCCeEEEEeCCCCCCCce-eeecc-CCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec---C
Q 011709 296 SVGDDSCLILWDARVGTSPVI-KVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---G 370 (479)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~-~~~~~-~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~---~ 370 (479)
+|+.||.|++||+++++ .. ..+.. |...|++++|+| ++.+|++++ |+.|++||++. ...+..+. .
T Consensus 187 sg~~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~------~~~~~~~~~~~~ 256 (343)
T 3lrv_A 187 LYSPDGILDVYNLSSPD--QASSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRK------DVGTLAYPTYTI 256 (343)
T ss_dssp EECTTSCEEEEESSCTT--SCCEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTS------STTCBSSCCCBC
T ss_pred EEcCCCEEEEEECCCCC--CCccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCC------CCcceeeccccc
Confidence 99999999999999988 33 45566 999999999999 999999999 55999999998 44444443 3
Q ss_pred CCCcEE--EEEEecCCCcEEEEEeC-CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEec---CCCee
Q 011709 371 HSAAVL--CVQWSPDKSSVFGSSAE-DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVL---RESCL 444 (479)
Q Consensus 371 h~~~v~--~l~~~p~~~~llas~s~-Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp---~~~~l 444 (479)
|...+. +++|+|++++ |++++. |+.|+||++...... +.. ..+..++|.+ +...+
T Consensus 257 ~~~~~~~~~~~~~~~g~~-l~~~s~~d~~i~v~~~~~~~~~---------------~~~---~~~~~~~~~~~~~~~~~l 317 (343)
T 3lrv_A 257 PEFKTGTVTYDIDDSGKN-MIAYSNESNSLTIYKFDKKTKN---------------WTK---DEESALCLQSDTADFTDM 317 (343)
T ss_dssp -----CCEEEEECTTSSE-EEEEETTTTEEEEEEECTTTCS---------------EEE---EEEEECCC----CCCCEE
T ss_pred ccccccceEEEECCCCCE-EEEecCCCCcEEEEEEcccccc---------------eEe---cCceeEecCcccccccee
Confidence 444554 6999999995 667777 999999999763211 111 2356777777 77777
Q ss_pred eecCCCccccceeEEEEe
Q 011709 445 VDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 445 ~~~~~~~~~~d~~i~i~~ 462 (479)
++++. |+.+.++.
T Consensus 318 ~~~~~-----d~~~~~~~ 330 (343)
T 3lrv_A 318 DVVCG-----DGGIAAIL 330 (343)
T ss_dssp EEEEE-----TTEEEEEE
T ss_pred EEEec-----CCceEEEE
Confidence 77777 77777664
No 113
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=1.1e-28 Score=241.90 Aligned_cols=241 Identities=20% Similarity=0.344 Sum_probs=186.9
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
....+|.+.|.+++| ++.+|++|+.||+|++||+.++ +....+.+|.. .|.+++|++ ..|++
T Consensus 167 ~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~l~~~~--~~l~s 228 (435)
T 1p22_A 167 RILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTG------------EMLNTLIHHCE-AVLHLRFNN--GMMVT 228 (435)
T ss_dssp EEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSC------------CEEEEECCCCS-CEEEEECCT--TEEEE
T ss_pred EEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCC------------cEEEEEcCCCC-cEEEEEEcC--CEEEE
Confidence 344579999999998 5679999999999999999987 56677888987 589999974 58999
Q ss_pred ecCCCcEEEEecCCCcccc---ccC--CcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee
Q 011709 214 GGKDKSVVLWSIQDHITSS---ATD--PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (479)
|+.||.|++||+.+..... ... .............+. ....++.+.+|+......+..+.+|...|.++.|+
T Consensus 229 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~--s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~- 305 (435)
T 1p22_A 229 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV--SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR- 305 (435)
T ss_dssp EETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE--EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-
T ss_pred eeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE--EEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-
Confidence 9999999999998764321 000 000000000111111 12346778899999999999999999999999995
Q ss_pred CCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC---CCCce
Q 011709 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG---VGSPI 365 (479)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~---~~~~~ 365 (479)
+ .++++|+.||.|++||++++. .+..+.+|...|.+++| ++.+|++|+.||.|++||++...... ...++
T Consensus 306 -~-~~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 378 (435)
T 1p22_A 306 -D-RLVVSGSSDNTIRLWDIECGA--CLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 378 (435)
T ss_dssp -T-TEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEE
T ss_pred -C-CEEEEEeCCCeEEEEECCCCC--EEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchhe
Confidence 3 689999999999999999988 77888899999999999 46899999999999999997632100 01267
Q ss_pred eeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 366 ~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
..+.+|.+.|++++| ++.. |++++.||.|++||+...
T Consensus 379 ~~~~~h~~~v~~l~~--~~~~-l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 379 RTLVEHSGRVFRLQF--DEFQ-IVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEECCCSSCCCCEEE--CSSC-EEECCSSSEEEEEC----
T ss_pred eeccCCCCCeEEEEe--CCCE-EEEEeCCCEEEEEECCCC
Confidence 889999999999999 5564 779999999999999874
No 114
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=2.3e-28 Score=235.40 Aligned_cols=214 Identities=18% Similarity=0.258 Sum_probs=175.3
Q ss_pred CCcEEEeccCCCceeeeeecCCC-CcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCC
Q 011709 186 RPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264 (479)
Q Consensus 186 ~~~~~~~~h~~~~v~~l~~s~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (479)
.....+.+|.. .|++++|+|++ ++|++|+.||.|++||+.+.....
T Consensus 64 ~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------------------------- 110 (383)
T 3ei3_B 64 KLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-------------------------------- 110 (383)
T ss_dssp EEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE--------------------------------
T ss_pred ceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce--------------------------------
Confidence 44557788887 59999999998 899999999999999997543210
Q ss_pred CCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeec---cCCCCeEEEEecCCCCcEEEE
Q 011709 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILT 341 (479)
Q Consensus 265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~l~t 341 (479)
.....+|...|.+++|+|++..+|++++.|+.|++||++... ...+. .|...|.+++|+| ++.+|++
T Consensus 111 ------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 180 (383)
T 3ei3_B 111 ------FIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV---IQVFAKTDSWDYWYCCVDVSV-SRQMLAT 180 (383)
T ss_dssp ------EECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE---EEEEECCCCSSCCEEEEEEET-TTTEEEE
T ss_pred ------eeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc---eEEEeccCCCCCCeEEEEECC-CCCEEEE
Confidence 122246999999999999544799999999999999999644 33333 4458899999999 9999999
Q ss_pred EeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCe
Q 011709 342 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG 421 (479)
Q Consensus 342 gs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 421 (479)
|+.||.|++||++ +.++..+.+|...|.+++|+|+++++|++++.|+.|++||++.... ...
T Consensus 181 ~~~d~~i~i~d~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~ 242 (383)
T 3ei3_B 181 GDSTGRLLLLGLD-------GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD-----------KNS 242 (383)
T ss_dssp EETTSEEEEEETT-------SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS-----------TTC
T ss_pred ECCCCCEEEEECC-------CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc-----------ccc
Confidence 9999999999995 4788999999999999999999996788999999999999987311 112
Q ss_pred eEEEeCCCCC-ceeEEEec-CCCeeeecCCCccccceeEEEEeeccc
Q 011709 422 LFFQHAGHSP-SSSIKFVL-RESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 422 l~~~~~gh~~-~~~~~~sp-~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
++... +|.. +.+++|+| ++.+|++++. |+.|++|+....
T Consensus 243 ~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~-----d~~i~iwd~~~~ 283 (383)
T 3ei3_B 243 YIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ-----RNEIRVYSSYDW 283 (383)
T ss_dssp EEEEE-ECSSCEEEEEECTTTSCEEEEEES-----SSEEEEEETTBT
T ss_pred eEEEe-cCCCceEEEEEcCCCCCEEEEEcC-----CCcEEEEECCCC
Confidence 33333 4554 99999999 9999999998 999999986543
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.3e-27 Score=218.41 Aligned_cols=267 Identities=13% Similarity=0.091 Sum_probs=176.3
Q ss_pred eeEEEecCCCC--cEEEEEeCCCcEEEEECCCC---CCccccCCC-----------CCCCCcEEEecc-CCCceeeeeec
Q 011709 143 VNRIRELPQNT--KIVATHTDSPDVLIWDVEAQ---PNRHAVLGA-----------TNSRPDLILTGH-QDNAEFALAMC 205 (479)
Q Consensus 143 V~~l~~~p~~~--~~lat~s~dg~i~iwd~~~~---~~~~~~~~~-----------~~~~~~~~~~~h-~~~~v~~l~~s 205 (479)
|.++.|-..+. -.+++++.. .|++|+.... +....-... .....+..-.|+ +...|.+|+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACED-VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEESS-EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEeccc-eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 45555544222 256677765 8999999886 211111000 001111111111 11257889999
Q ss_pred CC----CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCC-CCCCCceeecCCCCc
Q 011709 206 PT----EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG-PSVGPRGIYNGHEDT 280 (479)
Q Consensus 206 ~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~ 280 (479)
|+ ++++++++.+ +.+|++.++.... .+....+..+++|+. +.++.+..+.+|...
T Consensus 121 pd~~~~~~~l~s~g~~--~~v~~l~~g~lv~------------------ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~ 180 (356)
T 2w18_A 121 SDDESEKQVLLKSGNI--KAVLGLTKRRLVS------------------SSGTLSDQQVEVMTFAEDGGGKENQFLMPPE 180 (356)
T ss_dssp -----CCEEEEEEEEE--EEEEEETTTEEEE------------------EESSSTTCEEEEEEECTTSCEEEEEEECCCS
T ss_pred CCccccccEEEeCCCe--EEEEecCCCcEEE------------------ecccCCCCcEEEEEECCCCceeeeeccCCCc
Confidence 99 8889988744 7788875433211 111112333444444 334555677789999
Q ss_pred eEEEEEee---CCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCC---CCeEEEEecCCCCcEE------------EEE
Q 011709 281 VEDVTFCP---SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD---ADLHCVDWNPLDDNLI------------LTG 342 (479)
Q Consensus 281 v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~l------------~tg 342 (479)
++.++|++ ++ .+|++++.|++|+|||+++++ ++.++.+|. ..+.+++|+| ++.++ ++|
T Consensus 181 v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk--~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSG 256 (356)
T 2w18_A 181 ETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQ--LLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLR 256 (356)
T ss_dssp SCEEEEEEEETST-TEEEEEETTSEEEEEETTTCC--EEEEEECCC---CCCEEEEEEE-TTEEEEEEC-----------
T ss_pred eeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCc--EEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeecc
Confidence 99999999 55 689999999999999999998 777776543 4677889999 88876 678
Q ss_pred eCCCcEEEEecCCCCCCCCCCceeee-----cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCC
Q 011709 343 SADNSVRMFDRRNLTSNGVGSPINKF-----EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 417 (479)
Q Consensus 343 s~dg~I~iwd~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~ 417 (479)
+.|++|++||..+ ++.+..+ .+|...+.+..++ +. ++|+++.|++|+|||+.++
T Consensus 257 s~D~tIklWd~~t------gk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tG------------ 315 (356)
T 2w18_A 257 SPVFQLIVINPKT------TLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLG------------ 315 (356)
T ss_dssp -CCEEEEEEETTT------TEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTC------------
T ss_pred CCCcEEEEEECCC------CEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCC------------
Confidence 8999999999987 6666554 4777666555554 55 6889999999999999985
Q ss_pred CCCeeEEEeCCCCC-c-eeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 418 YPAGLFFQHAGHSP-S-SSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 418 ~~~~l~~~~~gh~~-~-~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
+++....||.. + ..++|+||+++|++++. |++|+||+.
T Consensus 316 ---k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~-----D~TIklWd~ 355 (356)
T 2w18_A 316 ---QCTALLPPVSDQHWSFVKWSGTDSHLLAGQK-----DGNIFVYHY 355 (356)
T ss_dssp ---SEEEEECCC--CCCCEEEECSSSSEEEEECT-----TSCEEEEEE
T ss_pred ---cEEEEecCCCCCeEEEEEECCCCCEEEEEEC-----CCcEEEecC
Confidence 45556778865 4 46899999999999999 999999984
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=8.5e-27 Score=225.02 Aligned_cols=246 Identities=12% Similarity=0.119 Sum_probs=188.7
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE-
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL- 212 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~- 212 (479)
...+.+...+.+++|+|+...++++++.|++|++||+.++ +....+..+. .+.+++|+|++++|+
T Consensus 25 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~------------~~~~~~~~~~--~v~~~~~spdg~~l~~ 90 (391)
T 1l0q_A 25 TATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN------------NVIATVPAGS--SPQGVAVSPDGKQVYV 90 (391)
T ss_dssp EEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT------------EEEEEEECSS--SEEEEEECTTSSEEEE
T ss_pred EEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC------------eEEEEEECCC--CccceEECCCCCEEEE
Confidence 3344555679999999944445578889999999999887 4555666665 489999999999775
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+++.|+.|++||+.++.. +..+. +...+.+++|+|++..
T Consensus 91 ~~~~~~~v~v~d~~~~~~----------------------------------------~~~~~-~~~~~~~~~~s~dg~~ 129 (391)
T 1l0q_A 91 TNMASSTLSVIDTTSNTV----------------------------------------AGTVK-TGKSPLGLALSPDGKK 129 (391)
T ss_dssp EETTTTEEEEEETTTTEE----------------------------------------EEEEE-CSSSEEEEEECTTSSE
T ss_pred EECCCCEEEEEECCCCeE----------------------------------------EEEEe-CCCCcceEEECCCCCE
Confidence 556779999999976432 12333 3346899999999965
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEE-EEEeCCCcEEEEecCCCCCCCCCCceeeecCC
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
++++++.|+.|++||+++++ ....+..+ ..+.+++|+| ++.+| ++++.|+.|++||++. ++.+..+. +
T Consensus 130 l~~~~~~~~~v~~~d~~~~~--~~~~~~~~-~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~-~ 198 (391)
T 1l0q_A 130 LYVTNNGDKTVSVINTVTKA--VINTVSVG-RSPKGIAVTP-DGTKVYVANFDSMSISVIDTVT------NSVIDTVK-V 198 (391)
T ss_dssp EEEEETTTTEEEEEETTTTE--EEEEEECC-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEEE-C
T ss_pred EEEEeCCCCEEEEEECCCCc--EEEEEecC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCC------CeEEEEEe-c
Confidence 55889999999999999887 55555444 5679999999 77766 6778899999999987 56666655 5
Q ss_pred CCcEEEEEEecCCCcEEEEEe--CCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeee-ecC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLV-DNN 448 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s--~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~-~~~ 448 (479)
...+.+++|+|+++++++++. .++.|++||+..+ +.+....+|..+.+++|+|+++.|+ +++
T Consensus 199 ~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---------------~~~~~~~~~~~~~~~~~s~dg~~l~~s~~ 263 (391)
T 1l0q_A 199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---------------KITARIPVGPDPAGIAVTPDGKKVYVALS 263 (391)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---------------EEEEEEECCSSEEEEEECTTSSEEEEEET
T ss_pred CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---------------eEEEEEecCCCccEEEEccCCCEEEEEcC
Confidence 568999999999997654444 6899999999873 3344455566788999999999884 555
Q ss_pred CCccccceeEEEEeecc
Q 011709 449 HGLSYANKKIKIYCHLE 465 (479)
Q Consensus 449 ~~~~~~d~~i~i~~~~~ 465 (479)
. ++.|++|+...
T Consensus 264 ~-----d~~v~v~d~~~ 275 (391)
T 1l0q_A 264 F-----XNTVSVIDTAT 275 (391)
T ss_dssp T-----TTEEEEEETTT
T ss_pred C-----CCEEEEEECCC
Confidence 6 89999998653
No 117
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=1.3e-26 Score=216.89 Aligned_cols=268 Identities=19% Similarity=0.334 Sum_probs=203.5
Q ss_pred chhhhhccccchhhhhhhhccccccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhccc
Q 011709 41 DDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHIS 120 (479)
Q Consensus 41 ~~~~~~w~~~~~~~y~~~~~~~l~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 120 (479)
+...++|.-.+..+-..+..+.-.-+..++.|.|.- ..+. +|+.+..+.+|+.+..+
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~--------~~l~-----sgs~Dg~v~iw~~~~~~---------- 100 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG--------NYLA-----VGTSSAEVQLWDVQQQK---------- 100 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS--------SEEE-----EEETTSEEEEEETTTTE----------
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC--------CEEE-----EEECCCcEEEeecCCce----------
Confidence 456777876554333333323333356778887752 2332 33467888888653211
Q ss_pred ccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCcee
Q 011709 121 QFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEF 200 (479)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~ 200 (479)
......+|...+.++.+ ++.+|++|+.++.+++|+..... .....+.+|.. .+.
T Consensus 101 -----------~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~ 154 (318)
T 4ggc_A 101 -----------RLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAE-----------HHVATLSGHSQ-EVC 154 (318)
T ss_dssp -----------EEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSS-----------CEEEEEECCSS-CEE
T ss_pred -----------eEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCCc-----------eeEEEEcCccC-ceE
Confidence 13445689888888776 44699999999999999988762 45567888987 589
Q ss_pred eeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCc
Q 011709 201 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT 280 (479)
Q Consensus 201 ~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 280 (479)
++.|++++++|++++.||+|++||+.++.... ........|...
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~------------------------------------~~~~~~~~~~~~ 198 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW------------------------------------VPLQTFTQHQGA 198 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCBTTBS------------------------------------CCSEEECCCCSC
T ss_pred EEEEcCCCCEEEEEecCcceeEEECCCCcccc------------------------------------cceeeecccCCc
Confidence 99999999999999999999999997653321 112445567889
Q ss_pred eEEEEEeeCCCcEE--EEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEe--CCCcEEEEecCCC
Q 011709 281 VEDVTFCPSSAQEF--CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNL 356 (479)
Q Consensus 281 v~~l~~~~~~~~~l--~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs--~dg~I~iwd~~~~ 356 (479)
|.+++++|.+...+ ++++.+++|++||.+... ... ...+...+..+.|+| .+..+++++ .|+.|+|||+++
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~--~~~-~~~~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~- 273 (318)
T 4ggc_A 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--CLS-AVDAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPT- 273 (318)
T ss_dssp EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC--EEE-EEECSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTT-
T ss_pred eEEEEecCCCCcEEEEEecCCCCEEEEEeccccc--ccc-cccceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCC-
Confidence 99999999886655 456788999999999877 333 346788899999999 777666554 799999999998
Q ss_pred CCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++++.++.+|.+.|++++|+|++++ |||||.||+|+|||+..
T Consensus 274 -----~~~~~~l~gH~~~V~~l~~spdg~~-l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 274 -----MAKVAELKGHTSRVLSLTMSPDGAT-VASAAADETLRLWRCFE 315 (318)
T ss_dssp -----CCEEEEECCCSSCEEEEEECTTSSC-EEEEETTTEEEEECCSC
T ss_pred -----CcEEEEEcCCCCCEEEEEEcCCCCE-EEEEecCCeEEEEECCC
Confidence 7899999999999999999999995 78999999999999976
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=4e-27 Score=224.78 Aligned_cols=285 Identities=11% Similarity=0.093 Sum_probs=199.5
Q ss_pred ceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeE
Q 011709 66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR 145 (479)
Q Consensus 66 psl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 145 (479)
+..++.|.|.... ...|+.+ ..+..++||++.... ........+|.+.|++
T Consensus 41 ~v~~~~~~~~~~~-----g~~l~~~-----~~dg~i~iw~~~~~~-------------------~~~~~~~~~h~~~v~~ 91 (368)
T 3mmy_A 41 SIGCLSFSPPTLP-----GNFLIAG-----SWANDVRCWEVQDSG-------------------QTIPKAQQMHTGPVLD 91 (368)
T ss_dssp CEEEEEECCTTSS-----SEEEEEE-----ETTSEEEEEEECTTS-------------------CEEEEEEEECSSCEEE
T ss_pred ceEEEEEcCCCCC-----ceEEEEE-----CCCCcEEEEEcCCCC-------------------ceeEEEeccccCCEEE
Confidence 6789999886200 1334333 367889999865210 0112445679999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeee--cCCCCcEEEecCCCcEEEE
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAM--CPTEPYVLSGGKDKSVVLW 223 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~--s~~~~~l~s~s~dg~i~vw 223 (479)
++|+| ++.+|++|+.||.|++||+.+. .. ..+.+|.. .|.+++| +|++.+|++++.||.|++|
T Consensus 92 ~~~~~-~~~~l~s~~~dg~v~iwd~~~~------------~~-~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vw 156 (368)
T 3mmy_A 92 VCWSD-DGSKVFTASCDKTAKMWDLSSN------------QA-IQIAQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFW 156 (368)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTTT------------EE-EEEEECSS-CEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred EEECc-CCCEEEEEcCCCcEEEEEcCCC------------Cc-eeeccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence 99999 8889999999999999999876 22 23567876 5899999 8999999999999999999
Q ss_pred ecCCCccccccCCccc-ccCCCCCceeecCCCCCCCCCCCCCCCCCCCc--eeecCCCCceEEEEEeeCCC---cEEEEE
Q 011709 224 SIQDHITSSATDPATA-KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR--GIYNGHEDTVEDVTFCPSSA---QEFCSV 297 (479)
Q Consensus 224 d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~~~~~~---~~l~s~ 297 (479)
|++++........... .........+.. ...++.+.+|+....... .....+...+.++.+.+... ..++++
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 157 DTRSSNPMMVLQLPERCYCADVIYPMAVV--ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp CSSCSSCSEEEECSSCEEEEEEETTEEEE--EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred ECCCCcEEEEEecCCCceEEEecCCeeEE--EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence 9987654322221100 000000001110 112334444444333211 11122345566777766542 239999
Q ss_pred ecCCeEEEEeCCCCCC-CceeeeccCCC------------CeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCc
Q 011709 298 GDDSCLILWDARVGTS-PVIKVEKAHDA------------DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 364 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~-~~~~~~~~~~~------------~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~ 364 (479)
+.||.|++||++.... .....+..|.. .|++++|+| ++.+|++|+.||.|++||+++ +.+
T Consensus 235 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~------~~~ 307 (368)
T 3mmy_A 235 SIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDA------RTK 307 (368)
T ss_dssp ETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTT------TEE
T ss_pred cCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCC------CcE
Confidence 9999999999998752 24555566665 799999999 999999999999999999998 788
Q ss_pred eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 365 ~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
+..+.+|...|++++|+|++.+ |++++.|+..+.|++-.
T Consensus 308 ~~~~~~~~~~v~~~~~s~~g~~-l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 308 LKTSEQLDQPISACCFNHNGNI-FAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEECCCCSSCEEEEEECTTSSC-EEEEECCCSTTCGGGCC
T ss_pred EEEecCCCCCceEEEECCCCCe-EEEEecccccccccccC
Confidence 9999999999999999999996 67898888666666543
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.4e-27 Score=218.27 Aligned_cols=177 Identities=13% Similarity=0.123 Sum_probs=135.2
Q ss_pred CCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC---CCCcEEEecCCCcEEEEecCCCccccccCCc
Q 011709 161 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEPYVLSGGKDKSVVLWSIQDHITSSATDPA 237 (479)
Q Consensus 161 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 237 (479)
.|+.|++|++... .+....+.+|.. .++.++|++ ++.+|++|+.|++|+|||+.++..
T Consensus 155 ~d~~V~~~~~s~d-----------G~~~~s~~~~~~-~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~------- 215 (356)
T 2w18_A 155 SDQQVEVMTFAED-----------GGGKENQFLMPP-EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL------- 215 (356)
T ss_dssp TTCEEEEEEECTT-----------SCEEEEEEECCC-SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-------
T ss_pred CCCcEEEEEECCC-----------CceeeeeccCCC-ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-------
Confidence 3777888887442 155567778886 478999999 678999999999999999986543
Q ss_pred ccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC---CCceEEEEEeeCCCcEE------------EEEecCCe
Q 011709 238 TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH---EDTVEDVTFCPSSAQEF------------CSVGDDSC 302 (479)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l------------~s~~~dg~ 302 (479)
+.++.+| ...+.+++|+|++ .++ ++|+.|++
T Consensus 216 ---------------------------------l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~t 261 (356)
T 2w18_A 216 ---------------------------------LKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQ 261 (356)
T ss_dssp ---------------------------------EEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEE
T ss_pred ---------------------------------EEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcE
Confidence 2445443 3467788999988 444 67889999
Q ss_pred EEEEeCCCCCCCceeee-----ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEE-
Q 011709 303 LILWDARVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL- 376 (479)
Q Consensus 303 i~iwd~~~~~~~~~~~~-----~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~- 376 (479)
|++||..+++ .+..+ .+|...+.+.++ ++.++++|+.||+|+|||+++ ++++.++.+|...+.
T Consensus 262 IklWd~~tgk--~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~t------Gk~l~tL~gH~~~vvs 330 (356)
T 2w18_A 262 LIVINPKTTL--SVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLL------GQCTALLPPVSDQHWS 330 (356)
T ss_dssp EEEEETTTTE--EEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTT------CSEEEEECCC--CCCC
T ss_pred EEEEECCCCE--EEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCC------CcEEEEecCCCCCeEE
Confidence 9999999887 44433 366666655554 368999999999999999998 889999999988665
Q ss_pred EEEEecCCCcEEEEEeCCCCEEEEeC
Q 011709 377 CVQWSPDKSSVFGSSAEDGLLNIWDY 402 (479)
Q Consensus 377 ~l~~~p~~~~llas~s~Dg~v~iwd~ 402 (479)
+++|+|++++ |++|+.|++|+|||+
T Consensus 331 ~vafSPDG~~-LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDSH-LLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSSE-EEEECTTSCEEEEEE
T ss_pred EEEECCCCCE-EEEEECCCcEEEecC
Confidence 5899999995 789999999999996
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.7e-28 Score=237.10 Aligned_cols=247 Identities=10% Similarity=0.069 Sum_probs=181.2
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCC----CceeeeeecCCCCcEE
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD----NAEFALAMCPTEPYVL 212 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~----~~v~~l~~s~~~~~l~ 212 (479)
+.|...|.+++|+| ++.+||+++.||+|+|||... ....+. |.. ..|.+++|||+|++|+
T Consensus 82 ~~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--------------~l~~l~-~~~~~~~~sv~svafSPDG~~LA 145 (588)
T 2j04_A 82 SQPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--------------MLTNLD-SKGNLSSRTYHCFEWNPIESSIV 145 (588)
T ss_dssp TSCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE--------------EEEECC-CSSCSTTTCEEEEEECSSSSCEE
T ss_pred cCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--------------eeeecc-CCCccccccEEEEEEcCCCCEEE
Confidence 46788999999999 889999999999999999533 233344 442 2489999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee----cCCCCceEEEEEee
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY----NGHEDTVEDVTFCP 288 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~ 288 (479)
+|+.||+|++||+.++..... ..-.+..+ .+|...|.+++|+|
T Consensus 146 sgs~DGtVkIWd~~~~~l~~~---------------------------------~~i~l~ti~~~~~gh~~~V~sVawSP 192 (588)
T 2j04_A 146 VGNEDGELQFFSIRKNSENTP---------------------------------EFYFESSIRLSDAGSKDWVTHIVWYE 192 (588)
T ss_dssp EEETTSEEEEEECCCCTTTCC---------------------------------CCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred EEcCCCEEEEEECCCCccccc---------------------------------cceeeeeeecccccccccEEEEEEcC
Confidence 999999999999976421000 00011333 56888999999999
Q ss_pred CCCcEEEEEecCCeEEEEeCCCCCCC-ceeee-ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee
Q 011709 289 SSAQEFCSVGDDSCLILWDARVGTSP-VIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
+| +++++.|++|++||+..+... ....+ .+|...|.+++|+ +++||+++ +++|++||+.. +....
T Consensus 193 dg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~------~~~~~ 259 (588)
T 2j04_A 193 DV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKN------YSISS 259 (588)
T ss_dssp TE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTT------TEEEE
T ss_pred Cc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCC------CeEEE
Confidence 87 788899999999999887731 22344 4788999999998 48889887 69999999987 34423
Q ss_pred eecCCCCcEEEEEE--ecCCCcEEEEEeCCCCEEEEeCCCC-----CccccCCC-----CCCCCCCeeEEEeCCCCCcee
Q 011709 367 KFEGHSAAVLCVQW--SPDKSSVFGSSAEDGLLNIWDYEKV-----GKKVEQGP-----RTTNYPAGLFFQHAGHSPSSS 434 (479)
Q Consensus 367 ~~~~h~~~v~~l~~--~p~~~~llas~s~Dg~v~iwd~~~~-----~~~~~~~~-----~~~~~~~~l~~~~~gh~~~~~ 434 (479)
...+|...|..++| +|++. .+++++.||+ ++|.+... +......+ -...+.+ +....+...|.+
T Consensus 260 ~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~--l~~~~~~~~I~~ 335 (588)
T 2j04_A 260 LKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNE--FNNYETTLVIHG 335 (588)
T ss_dssp EECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTS--SSSSCCEEEEEE
T ss_pred EEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCc--eeeeccceEEEE
Confidence 33389999999999 99997 5789999999 99998521 11100000 0000111 112233223789
Q ss_pred EEEecCCCeeeecCC
Q 011709 435 IKFVLRESCLVDNNH 449 (479)
Q Consensus 435 ~~~sp~~~~l~~~~~ 449 (479)
++|+|||..+|+++.
T Consensus 336 va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 336 ISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEECTTSSEEEEEEE
T ss_pred EEECCCCCEEEEEEe
Confidence 999999999999887
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=7.6e-28 Score=232.54 Aligned_cols=255 Identities=10% Similarity=0.091 Sum_probs=164.6
Q ss_pred CCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecC-------CCCcEEEEEeCCCcEE
Q 011709 94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELP-------QNTKIVATHTDSPDVL 166 (479)
Q Consensus 94 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-------~~~~~lat~s~dg~i~ 166 (479)
+++.++.++||+....... . ........+|.+.|++|+|+| .++++||+|+.|++|+
T Consensus 106 s~~~d~~v~lw~~~~~~~~-------~---------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 106 CVCQDNTVRLIITKNETII-------T---------QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp EEETTSCEEEEEEETTEEE-------E---------EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred EEeCCCcEEEEECCCCccc-------e---------eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 4457889999987531100 0 000112347999999999987 3678999999999999
Q ss_pred EEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecCCCcEEEEecCCCccccccCCcccccCCCC
Q 011709 167 IWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSS 245 (479)
Q Consensus 167 iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 245 (479)
|||+.+. .+...+.+|.. .|.+++|+|++. +|++|+.||+|++||+.++...............
T Consensus 170 ~Wd~~~~------------~~~~~~~~~~~-~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~-- 234 (393)
T 4gq1_A 170 IWRLTDE------------GPILAGYPLSS-PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP-- 234 (393)
T ss_dssp EEEEETT------------EEEEEEEECSS-CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC--
T ss_pred EEECCCC------------ceeeeecCCCC-CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc--
Confidence 9999876 45566777876 589999999875 8999999999999999876443221110000000
Q ss_pred CceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe-eCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCC
Q 011709 246 GSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA 324 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 324 (479)
. ....+...........+|...|.++.|+ +++ ..+++++.|+++++||++.+. ....+..|..
T Consensus 235 --~-----------~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~--~~~~l~~~~~ 298 (393)
T 4gq1_A 235 --W-----------LLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANN--DYNEISDSTM 298 (393)
T ss_dssp --C-----------SEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC----------------
T ss_pred --e-----------EEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCC--CCceEeeecC
Confidence 0 0000000111113345788899999998 566 789999999999999998766 3333333433
Q ss_pred CeEEE-------------------EecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCC
Q 011709 325 DLHCV-------------------DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS 385 (479)
Q Consensus 325 ~v~~l-------------------~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 385 (479)
.+..+ .+.+.++.++++|+.||.|+|||+.. +.++..+..|..+|.+++|+|+|+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~------~~~~~~~~~~~~~V~svafspdG~ 372 (393)
T 4gq1_A 299 KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE------KDSNSIPIQLGMPIVDFCWHQDGS 372 (393)
T ss_dssp -----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC------TTCCEEEEECSSCEEEEEECTTSS
T ss_pred ccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCC------CcEEEEecCCCCcEEEEEEcCCCC
Confidence 33333 33332445777888999999999998 677888888999999999999999
Q ss_pred cEEEEEeCCCCEEEEeCC
Q 011709 386 SVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 386 ~llas~s~Dg~v~iwd~~ 403 (479)
+ ||+++.|| +.+|.+.
T Consensus 373 ~-LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 373 H-LAIATEGS-VLLTRLM 388 (393)
T ss_dssp E-EEEEESSE-EEEEEEG
T ss_pred E-EEEEeCCC-eEEEEEe
Confidence 5 78998766 6677654
No 122
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.9e-28 Score=236.85 Aligned_cols=213 Identities=17% Similarity=0.304 Sum_probs=166.4
Q ss_pred CCcEEE-eccCCCceeeeeecC-CCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCC
Q 011709 186 RPDLIL-TGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA 263 (479)
Q Consensus 186 ~~~~~~-~~h~~~~v~~l~~s~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (479)
+.+..+ .+|.+ .|++++|+| ++++|++|+.||+|++||+.+......
T Consensus 53 ~~~~~~~~~h~~-~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~------------------------------ 101 (437)
T 3gre_A 53 KLIATLMENEPN-SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV------------------------------ 101 (437)
T ss_dssp CEEEEECTTTTS-CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC------------------------------
T ss_pred eEEeeeccCCCC-ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc------------------------------
Confidence 456667 77776 599999999 999999999999999999865211100
Q ss_pred CCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCC---CCCCCceeeecc------------CCCCeEE
Q 011709 264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR---VGTSPVIKVEKA------------HDADLHC 328 (479)
Q Consensus 264 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~------------~~~~v~~ 328 (479)
......+ +|...|.+++|+|++ .+|++++.||.|++||+. +++ ....... +...+.+
T Consensus 102 ----~~~~~~~-~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~ 173 (437)
T 3gre_A 102 ----YSSSLTY-DCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQES--EVKFLNCECIRKINLKNFGKNEYAVR 173 (437)
T ss_dssp ----CSCSEEE-ECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETT--EEEEEEEEEEEEEEGGGGSSCCCEEE
T ss_pred ----cceeeec-cCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCc--eeeccccceeEEEEccCcccccCceE
Confidence 0111222 489999999999988 789999999999999995 443 2322221 4556666
Q ss_pred EE--ecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC--CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 329 VD--WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 329 l~--~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
+. ++| ++.+|++|+.||.|++||++. ++++..+.+ |...|++++|+|++. +|++|+.||.|++||++.
T Consensus 174 ~~~~~~~-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~ 245 (437)
T 3gre_A 174 MRAFVNE-EKSLLVALTNLSRVIIFDIRT------LERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRF 245 (437)
T ss_dssp EEEEECS-SCEEEEEEETTSEEEEEETTT------CCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTT
T ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEeCCC------CeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCC
Confidence 66 556 799999999999999999998 788888888 899999999999988 578999999999999987
Q ss_pred CCccccCCCCCCCCCCeeEEE--eCCCCCceeEEEe----cCCCeeeecCCCccccceeEEEEeecc
Q 011709 405 VGKKVEQGPRTTNYPAGLFFQ--HAGHSPSSSIKFV----LRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~l~~~--~~gh~~~~~~~~s----p~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
. ..+.. ..++..+.+++|+ |++.+|++++. ||.|++|+...
T Consensus 246 ~---------------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~-----dg~i~iwd~~~ 292 (437)
T 3gre_A 246 N---------------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS-----KTFLTIWNFVK 292 (437)
T ss_dssp T---------------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST-----TEEEEEEETTT
T ss_pred c---------------cEEEEEecCCCCceEEEEeccccCCCccEEEEEcC-----CCcEEEEEcCC
Confidence 3 22222 2444568999555 56889999999 99999998753
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=2.3e-26 Score=225.09 Aligned_cols=259 Identities=8% Similarity=0.056 Sum_probs=199.5
Q ss_pred eeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
.....+.+.+.+.+++|+| ++.++++++.++.|++||+.++..... .....+.+|.. .|.+++|++++.++
T Consensus 114 ~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~-------~~~~~~~~~~~-~v~~~~~~~~~~~~ 184 (433)
T 3bws_A 114 RFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRL-------SPPEKYKKKLG-FVETISIPEHNELW 184 (433)
T ss_dssp EEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEE-------CCCHHHHTTCC-EEEEEEEGGGTEEE
T ss_pred eEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeee-------cCcccccccCC-ceeEEEEcCCCEEE
Confidence 3455566667788999999 888999999999999999988732210 00012346765 58999999999999
Q ss_pred EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 212 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
++++.|+.|++||+.++.. +..+..|...+.+++|+|++.
T Consensus 185 ~s~~~d~~v~~~d~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~ 224 (433)
T 3bws_A 185 VSQMQANAVHVFDLKTLAY----------------------------------------KATVDLTGKWSKILLYDPIRD 224 (433)
T ss_dssp EEEGGGTEEEEEETTTCCE----------------------------------------EEEEECSSSSEEEEEEETTTT
T ss_pred EEECCCCEEEEEECCCceE----------------------------------------EEEEcCCCCCeeEEEEcCCCC
Confidence 9999999999999965322 245567888999999999996
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEe--------CCCcEEEEecCCCCCCCCCC
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--------ADNSVRMFDRRNLTSNGVGS 363 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs--------~dg~I~iwd~~~~~~~~~~~ 363 (479)
.++++++.|+.|++||+++++ .+..+.. ...+.+++|+| ++.+|++++ .||.|++||++. ++
T Consensus 225 ~l~~~~~~~~~i~~~d~~~~~--~~~~~~~-~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~------~~ 294 (433)
T 3bws_A 225 LVYCSNWISEDISVIDRKTKL--EIRKTDK-IGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDK------EK 294 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTE--EEEECCC-CSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTT------TE
T ss_pred EEEEEecCCCcEEEEECCCCc--EEEEecC-CCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCC------Cc
Confidence 555777789999999999877 4555543 45699999999 888888888 589999999987 55
Q ss_pred ceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCe
Q 011709 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESC 443 (479)
Q Consensus 364 ~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~ 443 (479)
.+..+ .|...+.+++|+|+++.++++++.|+.|++||+... .+.........+.+++|+|++.+
T Consensus 295 ~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---------------~~~~~~~~~~~~~~~~~s~dg~~ 358 (433)
T 3bws_A 295 LIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---------------KVQKSIPVFDKPNTIALSPDGKY 358 (433)
T ss_dssp EEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---------------EEEEEEECSSSEEEEEECTTSSE
T ss_pred EEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---------------cEEEEecCCCCCCeEEEcCCCCE
Confidence 55544 466789999999999888888899999999999863 22222333445889999999998
Q ss_pred eeecCCCc----------cccceeEEEEeecc
Q 011709 444 LVDNNHGL----------SYANKKIKIYCHLE 465 (479)
Q Consensus 444 l~~~~~~~----------~~~d~~i~i~~~~~ 465 (479)
+++++.+- +..||.|++|+...
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred EEEEecCCCccccccccccccceEEEEEECCC
Confidence 88776531 12257999998643
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=9.5e-26 Score=220.76 Aligned_cols=242 Identities=10% Similarity=0.085 Sum_probs=191.0
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE-Eec
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGG 215 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~-s~s 215 (479)
.+|.+.|.+++|+| ++.++++++.|+.|++||+.++ +....+..|.. .+.+++|+|++++++ +++
T Consensus 166 ~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~------------~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 231 (433)
T 3bws_A 166 KKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTL------------AYKATVDLTGK-WSKILLYDPIRDLVYCSNW 231 (433)
T ss_dssp HTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTC------------CEEEEEECSSS-SEEEEEEETTTTEEEEEET
T ss_pred cccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCc------------eEEEEEcCCCC-CeeEEEEcCCCCEEEEEec
Confidence 37889999999988 8889999999999999999876 55566777776 589999999999774 566
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
.|+.|++||+.++... ..+.. ...+.+++|+|++ ..++
T Consensus 232 ~~~~i~~~d~~~~~~~----------------------------------------~~~~~-~~~~~~~~~~~~g-~~l~ 269 (433)
T 3bws_A 232 ISEDISVIDRKTKLEI----------------------------------------RKTDK-IGLPRGLLLSKDG-KELY 269 (433)
T ss_dssp TTTEEEEEETTTTEEE----------------------------------------EECCC-CSEEEEEEECTTS-SEEE
T ss_pred CCCcEEEEECCCCcEE----------------------------------------EEecC-CCCceEEEEcCCC-CEEE
Confidence 8999999999754321 22222 3458999999999 5666
Q ss_pred EEe--------cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCc-EEEEEeCCCcEEEEecCCCCCCCCCCcee
Q 011709 296 SVG--------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 296 s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
+++ .||.|++||+++++ ..... .|...+.+++|+| +++ ++++++.|+.|++||++. ++.+.
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~-~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~------~~~~~ 339 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKEK--LIDTI-GPPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKE------KKVQK 339 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTTE--EEEEE-EEEECEEEEEECS-STTEEEEEETTTTEEEEEETTT------TEEEE
T ss_pred EEECCCCccccCCCeEEEEECCCCc--EEeec-cCCCCcceEEECC-CCCEEEEEecCCCEEEEEECCC------CcEEE
Confidence 666 58899999999876 44443 5667899999999 675 667778999999999987 66666
Q ss_pred eecCCCCcEEEEEEecCCCcEEEEEeC---------------CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC
Q 011709 367 KFEGHSAAVLCVQWSPDKSSVFGSSAE---------------DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP 431 (479)
Q Consensus 367 ~~~~h~~~v~~l~~~p~~~~llas~s~---------------Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~ 431 (479)
.+. +...+.+++|+|+++.++ +++. ||.|++||+.++ +.+....++..
T Consensus 340 ~~~-~~~~~~~~~~s~dg~~l~-~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---------------~~~~~~~~~~~ 402 (433)
T 3bws_A 340 SIP-VFDKPNTIALSPDGKYLY-VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---------------TVKEFWEAGNQ 402 (433)
T ss_dssp EEE-CSSSEEEEEECTTSSEEE-EEECCCCCTTTCTTSCCSSCCEEEEEETTTT---------------EEEEEEECSSS
T ss_pred Eec-CCCCCCeEEEcCCCCEEE-EEecCCCccccccccccccceEEEEEECCCC---------------cEEEEecCCCC
Confidence 665 677899999999999655 4444 579999999873 33334445567
Q ss_pred ceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 432 SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 432 ~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
+.+++|+|++.+|++++.. ++.|++|+...
T Consensus 403 ~~~~~~s~dg~~l~~~~~~----d~~i~v~~~~~ 432 (433)
T 3bws_A 403 PTGLDVSPDNRYLVISDFL----DHQIRVYRRDG 432 (433)
T ss_dssp EEEEEECTTSCEEEEEETT----TTEEEEEEETT
T ss_pred CceEEEcCCCCEEEEEECC----CCeEEEEEecC
Confidence 8999999999999877654 89999998753
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=2.4e-25 Score=214.79 Aligned_cols=228 Identities=13% Similarity=0.134 Sum_probs=181.3
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE-EEecCCCcEEEEecCCCccc
Q 011709 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITS 231 (479)
Q Consensus 153 ~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l-~s~s~dg~i~vwd~~~~~~~ 231 (479)
+.++++++.|+.|++||+.++ +....+.+|.. +.+++|+|++++| ++++.|+.|++||+.++..
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~------------~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~- 66 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSN------------KVTATIPVGSN--PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV- 66 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTT------------EEEEEEECSSS--EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-
T ss_pred CEEEEEcCCCCEEEEEECCCC------------eEEEEeecCCC--cceEEECCCCCEEEEECCCCCeEEEEECCCCeE-
Confidence 357899999999999999887 55666777764 7899999999976 6777999999999975432
Q ss_pred cccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCC
Q 011709 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 311 (479)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 311 (479)
+..+..+. .+.+++|+|++..++++++.++.|++||+.++
T Consensus 67 ---------------------------------------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~ 106 (391)
T 1l0q_A 67 ---------------------------------------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN 106 (391)
T ss_dssp ---------------------------------------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ---------------------------------------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC
Confidence 13333333 89999999999656677778899999999988
Q ss_pred CCCceeeeccCCCCeEEEEecCCCCcEE-EEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEE
Q 011709 312 TSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS 390 (479)
Q Consensus 312 ~~~~~~~~~~~~~~v~~l~~sp~~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas 390 (479)
+ .+..+. +...+.+++|+| ++++| ++++.|+.|++||+++ ++.+..+..| ..+.+++|+|++++++++
T Consensus 107 ~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~-~~~~~~~~~~dg~~l~~~ 175 (391)
T 1l0q_A 107 T--VAGTVK-TGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVT------KAVINTVSVG-RSPKGIAVTPDGTKVYVA 175 (391)
T ss_dssp E--EEEEEE-CSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEEECC-SSEEEEEECTTSSEEEEE
T ss_pred e--EEEEEe-CCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCC------CcEEEEEecC-CCcceEEECCCCCEEEEE
Confidence 7 455554 455789999999 77766 7888899999999987 6777777765 457999999999987788
Q ss_pred EeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCC--CccccceeEEEEeecc
Q 011709 391 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNH--GLSYANKKIKIYCHLE 465 (479)
Q Consensus 391 ~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~--~~~~~d~~i~i~~~~~ 465 (479)
++.|+.|++||++.. ........+..+.+++|+|++.+|++++. . ++.|++|+...
T Consensus 176 ~~~~~~v~~~d~~~~---------------~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~----~~~v~~~d~~~ 233 (391)
T 1l0q_A 176 NFDSMSISVIDTVTN---------------SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKY----FNTVSMIDTGT 233 (391)
T ss_dssp ETTTTEEEEEETTTT---------------EEEEEEECSSEEEEEEECTTSSEEEEEEECSS----CCEEEEEETTT
T ss_pred eCCCCEEEEEECCCC---------------eEEEEEecCCCccceEECCCCCEEEEEecCcC----CCcEEEEECCC
Confidence 889999999999873 22223334456889999999999888873 3 89999998653
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=2.4e-25 Score=211.99 Aligned_cols=236 Identities=11% Similarity=0.136 Sum_probs=170.3
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEE
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~ 221 (479)
.+..+.+.+....++++++.|++|+|||+.++ +....+. |.. .|.+++|+++. ++++ .|+.|+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~------------~~~~~~~-~~~-~v~~v~~~~~~--~~~~-~~~~i~ 122 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK------------QDVSRIK-VDA-PVKDLFLSREF--IVVS-YGDVIS 122 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTT------------EEEEEEE-CSS-CEEEEEECSSE--EEEE-ETTEEE
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCC------------cEEEEEE-CCC-ceEEEEEcCCE--EEEE-EcCEEE
Confidence 47888888844444467888899999999887 4555565 343 58999998764 4444 378999
Q ss_pred EEecCCC-ccccccCC-cccccCCCCCceeecCCCCCCCCCCCCCCCCCC---------------C-ceeecCCCCceEE
Q 011709 222 LWSIQDH-ITSSATDP-ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG---------------P-RGIYNGHEDTVED 283 (479)
Q Consensus 222 vwd~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~h~~~v~~ 283 (479)
+||+.+. ........ ........ ..+....+..++.+.+|+..... + +..+.+|...|.+
T Consensus 123 i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~ 200 (355)
T 3vu4_A 123 VFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKM 200 (355)
T ss_dssp EEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEE
T ss_pred EEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEE
Confidence 9999876 32221111 00000000 22222224556777888877654 2 6788999999999
Q ss_pred EEEeeCCCcEEEEEecCCe-EEEEeCCCCCCCceeeec-c-CCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 011709 284 VTFCPSSAQEFCSVGDDSC-LILWDARVGTSPVIKVEK-A-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (479)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~-~-~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~ 360 (479)
++|+|++ .+|++|+.||+ |++||+++++ .+..+. + |...|++++|+| ++.+|++|+.|++|++||++.....
T Consensus 201 ~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~--~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~- 275 (355)
T 3vu4_A 201 VRLNRKS-DMVATCSQDGTIIRVFKTEDGV--LVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDN- 275 (355)
T ss_dssp EEECTTS-SEEEEEETTCSEEEEEETTTCC--EEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCC-
T ss_pred EEECCCC-CEEEEEeCCCCEEEEEECCCCc--EEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCc-
Confidence 9999998 78999999998 9999999988 667776 5 999999999999 9999999999999999999864311
Q ss_pred CCCceeee---------------------cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 361 VGSPINKF---------------------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 361 ~~~~~~~~---------------------~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
....+ ..+......++|++++.. +++++.||.+++|++...
T Consensus 276 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~-l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 276 ---KRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL-VVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ---CSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE-EEEETTTTEEEEEEEEEE
T ss_pred ---ccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCE-EEEEeCCCeEEEEEEEcC
Confidence 11111 111223467999999985 678999999999998763
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=2.1e-23 Score=202.63 Aligned_cols=245 Identities=9% Similarity=0.070 Sum_probs=180.7
Q ss_pred EEEecCCCceeEEEecCC-------------CCcEEEEEeCC------CcEEEEECCCCCCccccCCCCCCCCcEEEecc
Q 011709 134 HKTIIHPGEVNRIRELPQ-------------NTKIVATHTDS------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGH 194 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~-------------~~~~lat~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h 194 (479)
....+|...+..+++.+. .+..++.++.+ ++|++||+... ....+.+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-------------~~~~l~~~ 177 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-------------NQFVVHRS 177 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-------------SCEEEEEE
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-------------CCEEEeCC
Confidence 345577777777766541 13455555543 79999999743 34567788
Q ss_pred CCCceeeeeecCCCCcEEEecCCC---cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCc
Q 011709 195 QDNAEFALAMCPTEPYVLSGGKDK---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR 271 (479)
Q Consensus 195 ~~~~v~~l~~s~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (479)
.. .+.+++|+|+|++|++++.++ .|++||+.++..
T Consensus 178 ~~-~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~----------------------------------------- 215 (415)
T 2hqs_A 178 PQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----------------------------------------- 215 (415)
T ss_dssp SS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----------------------------------------
T ss_pred CC-cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-----------------------------------------
Confidence 76 589999999999999999875 999999976432
Q ss_pred eeecCCCCceEEEEEeeCCCcEEEEEecCCe--EEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC-CC--
Q 011709 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN-- 346 (479)
Q Consensus 272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg-- 346 (479)
..+..|...+.+++|+|+|..++++++.|+. |.+||+++++ ...+..|...+.+++|+| ++++|++++. ++
T Consensus 216 ~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 216 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRP 291 (415)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEECCCCSSCEEEEEECT-TSSEEEEEECTTSSC
T ss_pred EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---EEeCcCCCCcccceEECC-CCCEEEEEECCCCCc
Confidence 3455677889999999999545557777665 9999999877 355667888999999999 8998888876 45
Q ss_pred cEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeC--CCCEEEEeCCCCCccccCCCCCCCCCCeeEE
Q 011709 347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (479)
Q Consensus 347 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~--Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 424 (479)
.|++||+.. +. ...+..|...+.+++|+|++++|++++.. +..|.+||+..+. + .
T Consensus 292 ~i~~~d~~~------~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~---------------~-~ 348 (415)
T 2hqs_A 292 QVYKVNING------GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---------------V-Q 348 (415)
T ss_dssp EEEEEETTS------SC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---------------E-E
T ss_pred EEEEEECCC------CC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC---------------E-E
Confidence 677778876 33 44566677889999999999975444433 2589999998731 1 1
Q ss_pred EeCCCCCceeEEEecCCCeeeecCCCccccce--eEEEEeec
Q 011709 425 QHAGHSPSSSIKFVLRESCLVDNNHGLSYANK--KIKIYCHL 464 (479)
Q Consensus 425 ~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~--~i~i~~~~ 464 (479)
...++..+.+++|+|++++|+.++.+ ++ .|.+|+..
T Consensus 349 ~l~~~~~~~~~~~spdg~~l~~~s~~----~~~~~l~~~d~~ 386 (415)
T 2hqs_A 349 VLSSTFLDETPSLAPNGTMVIYSSSQ----GMGSVLNLVSTD 386 (415)
T ss_dssp ECCCSSSCEEEEECTTSSEEEEEEEE----TTEEEEEEEETT
T ss_pred EecCCCCcCCeEEcCCCCEEEEEEcC----CCccEEEEEECC
Confidence 22334468999999999999888873 33 67888654
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=3.4e-23 Score=191.05 Aligned_cols=242 Identities=11% Similarity=0.062 Sum_probs=176.3
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCC-CCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA-QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.....|.+.|.+++|+| ++.+||+++ ++.|++||+.+ + .......+|....+.+++|+|++++|+
T Consensus 35 ~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~------------~~~~~~~~~~~~~~~~~~~spdg~~l~ 100 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDP------------SPEKVDTGFATICNNDHGISPDGALYA 100 (297)
T ss_dssp EEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCC------------SCEECCCTTCCCBCSCCEECTTSSEEE
T ss_pred eeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCC------------CceEeccccccccccceEECCCCCEEE
Confidence 35567899999999999 788888887 77999999988 6 233334455444688999999999999
Q ss_pred Eec--CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCC
Q 011709 213 SGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS 290 (479)
Q Consensus 213 s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 290 (479)
+++ .++.+.||.++.... ....+..+ ..+..++|+|++
T Consensus 101 ~~~~~~~~~~~l~~~~~~~~---------------------------------------~~~~~~~~-~~~~~~~~spdg 140 (297)
T 2ojh_A 101 ISDKVEFGKSAIYLLPSTGG---------------------------------------TPRLMTKN-LPSYWHGWSPDG 140 (297)
T ss_dssp EEECTTTSSCEEEEEETTCC---------------------------------------CCEECCSS-SSEEEEEECTTS
T ss_pred EEEeCCCCcceEEEEECCCC---------------------------------------ceEEeecC-CCccceEECCCC
Confidence 988 445666666532100 00222223 248889999999
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCceeeec
Q 011709 291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
..++++++.|+.+++|++..... ....+..+...+.+++|+| ++.+|+.++ .++.++||+++.. +..+..+.
T Consensus 141 ~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~-----~~~~~~~~ 213 (297)
T 2ojh_A 141 KSFTYCGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVD-----GSSVERIT 213 (297)
T ss_dssp SEEEEEEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT-----SSCEEECC
T ss_pred CEEEEEECCCCceEEEEEECCCC-cceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCC-----CCCcEEEe
Confidence 65555888999999999654322 2445567888999999999 888777666 5899999998732 45677788
Q ss_pred CCCCcEEEEEEecCCCcEEEEEeCC-----------CCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC-CceeEEE
Q 011709 370 GHSAAVLCVQWSPDKSSVFGSSAED-----------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS-PSSSIKF 437 (479)
Q Consensus 370 ~h~~~v~~l~~~p~~~~llas~s~D-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~-~~~~~~~ 437 (479)
.|...+.+++|+|+++++ ++++.+ +.|.+||+... ....+....+|. .+.+++|
T Consensus 214 ~~~~~~~~~~~s~dg~~l-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-------------~~~~~~~~~~~~~~~~~~~~ 279 (297)
T 2ojh_A 214 DSAYGDWFPHPSPSGDKV-VFVSYDADVFDHPRDLDVRVQLMDMDGG-------------NVETLFDLFGGQGTMNSPNW 279 (297)
T ss_dssp CCSEEEEEEEECTTSSEE-EEEEEETTCCSCCSSEEEEEEEEETTSC-------------SCEEEEEEEESTTTSCSCCB
T ss_pred cCCcccCCeEECCCCCEE-EEEEcCCCCCcccccCceEEEEEecCCC-------------CceeeeccCCCCcccccceE
Confidence 888899999999999965 455544 56999999873 112233333444 4889999
Q ss_pred ecCCCeeeecCCC
Q 011709 438 VLRESCLVDNNHG 450 (479)
Q Consensus 438 sp~~~~l~~~~~~ 450 (479)
+|+++.|+.++.+
T Consensus 280 spdg~~l~~~~~~ 292 (297)
T 2ojh_A 280 SPDGDEFAYVRYF 292 (297)
T ss_dssp CTTSSEEEEEEEC
T ss_pred CCCCCEEEEEEec
Confidence 9999999887763
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=5.7e-22 Score=192.58 Aligned_cols=223 Identities=12% Similarity=0.051 Sum_probs=169.3
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCC---cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCc
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSP---DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY 210 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~ 210 (479)
.....|.+.|.+++|+| +++.||+++.++ .|++||+.++ +. ..+..|.. .+.+++|+|+|++
T Consensus 172 ~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg------------~~-~~l~~~~~-~~~~~~~spdg~~ 236 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANG------------AV-RQVASFPR-HNGAPAFSPDGSK 236 (415)
T ss_dssp EEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC------------CE-EEEECCSS-CEEEEEECTTSSE
T ss_pred EEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCC------------cE-EEeecCCC-cccCEEEcCCCCE
Confidence 44567899999999999 888999998875 9999999877 22 34666765 5899999999998
Q ss_pred EE-EecCCCc--EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 211 VL-SGGKDKS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 211 l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
|+ +++.|+. |.+||+.++.. ..+..|...+.+++|+
T Consensus 237 la~~~~~~g~~~i~~~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 237 LAFALSKTGSLNLYVMDLASGQI-----------------------------------------RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTCCE-----------------------------------------EECCCCSSCEEEEEEC
T ss_pred EEEEEecCCCceEEEEECCCCCE-----------------------------------------EeCcCCCCcccceEEC
Confidence 87 6766655 99999875322 3455677889999999
Q ss_pred eCCCcEEEEEec-CC--eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC---CcEEEEecCCCCCCCC
Q 011709 288 PSSAQEFCSVGD-DS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGV 361 (479)
Q Consensus 288 ~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d---g~I~iwd~~~~~~~~~ 361 (479)
|++ ..|++++. ++ .|.+||+.++. ...+..+...+.+++|+| ++++|++++.+ +.|++||+.+
T Consensus 276 pdg-~~l~~~s~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~------ 344 (415)
T 2hqs_A 276 PDS-QNLAFTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLAT------ 344 (415)
T ss_dssp TTS-SEEEEEECTTSSCEEEEEETTSSC---CEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTT------
T ss_pred CCC-CEEEEEECCCCCcEEEEEECCCCC---EEEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCC------
Confidence 999 55665554 55 67777988776 233446777899999999 89998888764 5899999987
Q ss_pred CCceeeecCCCCcEEEEEEecCCCcEEEEEeCCC---CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEE
Q 011709 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG---LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKF 437 (479)
Q Consensus 362 ~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~ 437 (479)
+.. ..+..|. .+.+++|+|+++.| ++++.|+ .|.+||+... ......+|.. +.+++|
T Consensus 345 ~~~-~~l~~~~-~~~~~~~spdg~~l-~~~s~~~~~~~l~~~d~~g~----------------~~~~l~~~~~~v~~~~~ 405 (415)
T 2hqs_A 345 GGV-QVLSSTF-LDETPSLAPNGTMV-IYSSSQGMGSVLNLVSTDGR----------------FKARLPATDGQVKFPAW 405 (415)
T ss_dssp CCE-EECCCSS-SCEEEEECTTSSEE-EEEEEETTEEEEEEEETTSC----------------CEEECCCSSSEEEEEEE
T ss_pred CCE-EEecCCC-CcCCeEEcCCCCEE-EEEEcCCCccEEEEEECCCC----------------cEEEeeCCCCCCcCCcc
Confidence 443 4565564 89999999999964 5666665 7999998752 2334456654 899999
Q ss_pred ecCCC
Q 011709 438 VLRES 442 (479)
Q Consensus 438 sp~~~ 442 (479)
+|...
T Consensus 406 ~~~~~ 410 (415)
T 2hqs_A 406 SPYLH 410 (415)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 99654
No 130
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=5.1e-23 Score=200.73 Aligned_cols=222 Identities=11% Similarity=0.099 Sum_probs=158.1
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCC----CCCCCcEEEeccCCCceeeeeecCCCCcEE----
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGA----TNSRPDLILTGHQDNAEFALAMCPTEPYVL---- 212 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~---- 212 (479)
..++.+++++ ++.++++++.+| ++||+............. ........ ..|.. .|++++|+|+|++|+
T Consensus 37 ~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 37 ERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKF-PIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSS-CEEEEEECTTSCEEEEEEE
T ss_pred CCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCC-cccEEEEcCCCCEEEEEEe
Confidence 4588999999 667888999887 999886532111000000 00011111 23343 589999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
+|+.|+.|++||+.+....... . ......+..+.+|...|.+++|+|++..
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~-~----------------------------~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 163 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQ-Q----------------------------KRPFAYHKLLKDAGGMVIDMKWNPTVPS 163 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCS-S----------------------------CCCSEEEECCCSGGGSEEEEEECSSCTT
T ss_pred ccCCCceEEEEEccccccCCcC-C----------------------------cceeeeeeccCCCCCceEEEEECCCCCC
Confidence 8999999999998753110000 0 0000112456679999999999998558
Q ss_pred EEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC--
Q 011709 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-- 370 (479)
Q Consensus 293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~-- 370 (479)
+|++++.||+|++||++++. ......+|...|.+++|+| ++.+|++|+.||.|++||++. .....+..
T Consensus 164 ~las~s~Dg~v~iwD~~~~~--~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~-------~~~~~~~~~~ 233 (434)
T 2oit_A 164 MVAVCLADGSIAVLQVTETV--KVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL-------QEKKVIPCPP 233 (434)
T ss_dssp EEEEEETTSCEEEEEESSSE--EEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC-------CEEEEECCCT
T ss_pred EEEEEECCCeEEEEEcCCCc--ceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC-------cccccccCCc
Confidence 99999999999999999885 4445557899999999999 899999999999999999983 23333332
Q ss_pred -----CCCcEEEEEEecCCCcEEEEEeCCCC------EEEEeCCCC
Q 011709 371 -----HSAAVLCVQWSPDKSSVFGSSAEDGL------LNIWDYEKV 405 (479)
Q Consensus 371 -----h~~~v~~l~~~p~~~~llas~s~Dg~------v~iwd~~~~ 405 (479)
|...|.+++|++++.++++.++.||. +++||+++.
T Consensus 234 ~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 234 FYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 33489999999988766555656644 899999874
No 131
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=1.1e-21 Score=186.12 Aligned_cols=299 Identities=11% Similarity=0.141 Sum_probs=195.1
Q ss_pred eEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeC--
Q 011709 84 RQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTD-- 161 (479)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~-- 161 (479)
.+++|+|+.+.+ ....+.++.++... ..+.......+...+..++|+| ++++++++..
T Consensus 2 ~~~~~vg~y~~~-~~~~i~v~~~d~~t------------------g~~~~~~~~~~~~~p~~~a~sp-dg~l~~~~~~~~ 61 (347)
T 3hfq_A 2 QERILFGTYTKK-TSQGIYQGTLDTTA------------------KTLTNDGLLAATQNPTYLALSA-KDCLYSVDKEDD 61 (347)
T ss_dssp EEEEEEEECCSS-SCCEEEEEEEETTT------------------TEEEEEEEEEECSCCCCEEECT-TCEEEEEEEETT
T ss_pred CcEEEEEeccCC-CCCCEEEEEEcCCC------------------CeEEEeeeeeccCCcceEEEcc-CCeEEEEEecCC
Confidence 478999998765 45678887765311 1122334456667888999999 6765555442
Q ss_pred CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec-CCCcEEEEecCCCccccccCCcccc
Q 011709 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAK 240 (479)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~ 240 (479)
++.|++||+.++. .+.+..+..+.. .+..++|+|+|++|++++ .++.|.+|++........... .
T Consensus 62 ~~~v~~~~~~~g~----------~~~~~~~~~~~~-~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~---~ 127 (347)
T 3hfq_A 62 EGGIAAWQIDGQT----------AHKLNTVVAPGT-PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDT---V 127 (347)
T ss_dssp EEEEEEEEEETTE----------EEEEEEEEEESC-CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEE---E
T ss_pred CceEEEEEecCCc----------EEEeeeeecCCC-CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecce---e
Confidence 6899999997651 123334444554 368999999999888877 789999999963211000000 0
Q ss_pred cCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCC-CCCCCceeee
Q 011709 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVE 319 (479)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~ 319 (479)
...+ . .+. ...+...+.+++|+|++. ++++...++.|.+||+. ++........
T Consensus 128 ~~~~---------------------~--~p~--~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~ 181 (347)
T 3hfq_A 128 QHSG---------------------H--GPR--PEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVL 181 (347)
T ss_dssp ECCC---------------------C--CSS--TTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred ecCC---------------------C--CCC--ccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeE
Confidence 0000 0 000 011334688999999995 78888889999999998 4441111111
Q ss_pred cc-CCCCeEEEEecCCCCcEEEE-EeCCCcEEEEecCCCCCCCCCC--ceeeecCCC------CcEEEEEEecCCCcEEE
Q 011709 320 KA-HDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGS--PINKFEGHS------AAVLCVQWSPDKSSVFG 389 (479)
Q Consensus 320 ~~-~~~~v~~l~~sp~~~~~l~t-gs~dg~I~iwd~~~~~~~~~~~--~~~~~~~h~------~~v~~l~~~p~~~~lla 389 (479)
.. ....+..++|+| +++++++ +..++.|.+|++.... +. .+..+.... ..+..++|+|+++++++
T Consensus 182 ~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v 256 (347)
T 3hfq_A 182 TMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQT----GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV 256 (347)
T ss_dssp ECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTT----TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE
T ss_pred EcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCC----CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE
Confidence 22 234678899999 8885555 5668899999987521 22 222332222 45889999999998777
Q ss_pred EEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC-CceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 390 SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS-PSSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 390 s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~-~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
+...++.|.+||+...+. ...+.....+. .+..++|+||+++|++++.+ ++.|.+|..
T Consensus 257 ~~~~~~~v~v~~~~~~g~------------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~----~~~v~v~~~ 315 (347)
T 3hfq_A 257 SNRGYNTLAVFAVTADGH------------LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN----TDNATLYAR 315 (347)
T ss_dssp EEETTTEEEEEEECGGGC------------EEEEEEEECSSSCCCEEEECTTSSEEEEEETT----TTEEEEEEE
T ss_pred EeCCCCEEEEEEECCCCc------------EEEeEEEecCCCCcCeEEECCCCCEEEEEEcC----CCcEEEEEE
Confidence 888899999999974221 12333333333 37899999999988887764 789999954
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=2.8e-21 Score=182.45 Aligned_cols=261 Identities=11% Similarity=0.172 Sum_probs=176.0
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCC-CcEEEEECC--CCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDS-PDVLIWDVE--AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 209 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~d-g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~ 209 (479)
....+.|.+.+.+++|+| ++++|++++.+ +.|++|++. ++. ......+..+. .+..++|+|+++
T Consensus 30 ~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~~~--~~~~~~~s~dg~ 96 (343)
T 1ri6_A 30 LTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGA----------LTFAAESALPG--SLTHISTDHQGQ 96 (343)
T ss_dssp EEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCC----------EEEEEEEECSS--CCSEEEECTTSS
T ss_pred EeeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCc----------eeeccccccCC--CCcEEEEcCCCC
Confidence 455567888999999999 77777777765 999999997 331 12233444444 368999999999
Q ss_pred cEEEec-CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee
Q 011709 210 YVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 210 ~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (479)
+|++++ .++.|.+||+..+... .....+.. ...+.+++|+|
T Consensus 97 ~l~~~~~~~~~i~~~d~~~~~~~-------------------------------------~~~~~~~~-~~~~~~~~~s~ 138 (343)
T 1ri6_A 97 FVFVGSYNAGNVSVTRLEDGLPV-------------------------------------GVVDVVEG-LDGCHSANISP 138 (343)
T ss_dssp EEEEEETTTTEEEEEEEETTEEE-------------------------------------EEEEEECC-CTTBCCCEECT
T ss_pred EEEEEecCCCeEEEEECCCCccc-------------------------------------cccccccC-CCCceEEEECC
Confidence 776655 5889999999421110 00122222 23588899999
Q ss_pred CCCcEEEEEecCCeEEEEeCCC-CCCCcee--eec-cCCCCeEEEEecCCCCcEEEEE-eCCCcEEEEecCCCCCCCCCC
Q 011709 289 SSAQEFCSVGDDSCLILWDARV-GTSPVIK--VEK-AHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGS 363 (479)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~--~~~-~~~~~v~~l~~sp~~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~ 363 (479)
++..+++++..++.|.+||+.+ ++..... ... .....+..++|+| ++.+++++ ..++.|.+||++... +.
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~----g~ 213 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPH----GN 213 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTT----SC
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCC----Cc
Confidence 9954444444899999999987 5411111 122 2345788999999 88766554 478999999996422 22
Q ss_pred c--eeeec----CC--CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeE
Q 011709 364 P--INKFE----GH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSI 435 (479)
Q Consensus 364 ~--~~~~~----~h--~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~ 435 (479)
. +..+. ++ ...+..++|+|+++++++++..|+.|.+||+...+ .....+.....+..+.++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~-----------~~~~~~~~~~~~~~~~~~ 282 (343)
T 1ri6_A 214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG-----------SVLSKEGFQPTETQPRGF 282 (343)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-----------CCEEEEEEEECSSSCCCE
T ss_pred EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC-----------CceEEeeeecCCCccceE
Confidence 1 22222 11 23577899999999887788789999999997421 111223333333448899
Q ss_pred EEecCCCeeeecCCCccccceeEEEEeec
Q 011709 436 KFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 436 ~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
+|+|++++|++++.. ++.|.+|...
T Consensus 283 ~~s~dg~~l~~~~~~----~~~v~v~~~d 307 (343)
T 1ri6_A 283 NVDHSGKYLIAAGQK----SHHISVYEIV 307 (343)
T ss_dssp EECTTSSEEEEECTT----TCEEEEEEEE
T ss_pred EECCCCCEEEEecCC----CCeEEEEEEc
Confidence 999999988888754 8999999543
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=8e-21 Score=190.27 Aligned_cols=261 Identities=12% Similarity=0.106 Sum_probs=186.6
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEEC--CCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC----CCCcEEEec-
Q 011709 143 VNRIRELPQNTKIVATHTDSPDVLIWDV--EAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP----TEPYVLSGG- 215 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~----~~~~l~s~s- 215 (479)
+..++|+| ++++|++++.|++|++||+ .+. +....+..+. .+..++|+| +|++|++++
T Consensus 181 ~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~------------~~~~~i~~g~--~p~~va~sp~~~~dg~~l~v~~~ 245 (543)
T 1nir_A 181 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEP------------TKVAEIKIGI--EARSVESSKFKGYEDRYTIAGAY 245 (543)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSSC------------EEEEEEECCS--EEEEEEECCSTTCTTTEEEEEEE
T ss_pred cceEEECC-CCCEEEEECCCCeEEEEECcCCCC------------cEEEEEecCC--CcceEEeCCCcCCCCCEEEEEEc
Confidence 89999999 8889999999999999999 554 4455565433 468999999 999999888
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC-CCceEEEEEeeCCCcEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l 294 (479)
.+++|.+||..+............ .. ....-| ...+.++.++|+++.++
T Consensus 246 ~~~~v~v~D~~t~~~~~~i~~~g~---------------------------~~---~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 246 WPPQFAIMDGETLEPKQIVSTRGM---------------------------TV---DTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp ESSEEEEEETTTCCEEEEEECCEE---------------------------CS---SSCCEESCCCEEEEEECSSSSEEE
T ss_pred cCCeEEEEeccccccceeecccCc---------------------------cc---CccccccCCceEEEEECCCCCEEE
Confidence 489999999876543211110000 00 000002 23789999999988888
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEE-eCCCcEEEEecCCCCCCCCCCceeeecC---
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEG--- 370 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~~~~~~~~--- 370 (479)
++...++.|.+||+.+.+...+... .+...+..++|+| ++++|+++ ..+++|.+||+.+ ++.+..+..
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~t------g~l~~~i~~g~~ 367 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKD------RRLSALVDVGKT 367 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTT------TEEEEEEECSSS
T ss_pred EEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECC-CCCEEEEEecCCCeEEEEECCC------CeEEEeeccCCC
Confidence 9999999999999998763222233 4667788999999 88876655 4589999999998 677777664
Q ss_pred -CCCcEEEEEEecCCCcEEEEEe-CCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeeec
Q 011709 371 -HSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVDN 447 (479)
Q Consensus 371 -h~~~v~~l~~~p~~~~llas~s-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~ 447 (479)
|.+....+ ++|++..++++++ .|++|.|||+...+... ...+.+-...+|.. +..++|+|+++.|+++
T Consensus 368 ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~--------~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~ 438 (543)
T 1nir_A 368 PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ--------YAWKKVAELQGQGGGSLFIKTHPKSSHLYVD 438 (543)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT--------TBTSEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch--------hcCeEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence 55443333 5788666788876 58999999998732110 11345556667765 6889999999999998
Q ss_pred CCCccc---cceeEEEEeeccc
Q 011709 448 NHGLSY---ANKKIKIYCHLEA 466 (479)
Q Consensus 448 ~~~~~~---~d~~i~i~~~~~~ 466 (479)
+.. .- .+++|.+|+....
T Consensus 439 ~~~-~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 439 TTF-NPDARISQSVAVFDLKNL 459 (543)
T ss_dssp CTT-CSSHHHHTCEEEEETTCT
T ss_pred cCC-CCCcccCceEEEEECCCC
Confidence 731 11 1679999987644
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=2.4e-20 Score=175.44 Aligned_cols=247 Identities=9% Similarity=0.044 Sum_probs=171.9
Q ss_pred CCCceeEEEecCCCCc-EEEEEeCCCcEEEEECCCCCCccccCCCCCCCC-cEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 139 HPGEVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRP-DLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~-~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
+...+ .++|+| +++ +++++..++.|++||..++ .. ...+..+.. ...+++|+|+|++|+++..
T Consensus 39 ~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~------------~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~ 103 (331)
T 3u4y_A 39 GYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLE------------PPKVVAIQEGQS-SMADVDITPDDQFAVTVTG 103 (331)
T ss_dssp CCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSS------------SCEEEEEEECSS-CCCCEEECTTSSEEEECCC
T ss_pred cCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCC------------ceeEEecccCCC-CccceEECCCCCEEEEecC
Confidence 44556 999999 555 5555555899999999887 33 445555554 3444999999999986655
Q ss_pred CC---cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 217 DK---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 217 dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
++ .|.+||+.++... ..+.. .....+++|+|++..+
T Consensus 104 ~~~~~~i~v~d~~~~~~~----------------------------------------~~~~~-~~~~~~~~~spdg~~l 142 (331)
T 3u4y_A 104 LNHPFNMQSYSFLKNKFI----------------------------------------STIPI-PYDAVGIAISPNGNGL 142 (331)
T ss_dssp SSSSCEEEEEETTTTEEE----------------------------------------EEEEC-CTTEEEEEECTTSSCE
T ss_pred CCCcccEEEEECCCCCeE----------------------------------------EEEEC-CCCccceEECCCCCEE
Confidence 53 8999999754321 22222 3346899999999656
Q ss_pred EEEEecCCe-EEEEeCCCCCCCce--eeeccCCCCeEEEEecCCCCcEE-EEEeCCCcEEEEecCCCCCCCCCCc---ee
Q 011709 294 FCSVGDDSC-LILWDARVGTSPVI--KVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSP---IN 366 (479)
Q Consensus 294 l~s~~~dg~-i~iwd~~~~~~~~~--~~~~~~~~~v~~l~~sp~~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~---~~ 366 (479)
+++...++. |.+|++........ ............++|+| +++++ +++..++.|++||+.. ++. +.
T Consensus 143 ~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~------~~~~~~~~ 215 (331)
T 3u4y_A 143 ILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQN------PENITLLN 215 (331)
T ss_dssp EEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSS------TTSCEEEE
T ss_pred EEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCC------Ccccceee
Confidence 667677788 99999986442100 11123455689999999 88755 4555689999999987 555 66
Q ss_pred eecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC--------CCceeEEEe
Q 011709 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--------SPSSSIKFV 438 (479)
Q Consensus 367 ~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh--------~~~~~~~~s 438 (479)
.+.. ...+..++|+|++++++++...++.|.+||+.++ .... +.....+ .....++|+
T Consensus 216 ~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~~s 281 (331)
T 3u4y_A 216 AVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG-TLSF------------VKSFGHGLLIDPRPLFGANQMALN 281 (331)
T ss_dssp EEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT-EEEE------------EEEEECCCCCCCGGGTTCCCEEEC
T ss_pred eccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC-ceee------------ecccccccccCCCCcccccceEEC
Confidence 6664 3667899999999987777777889999999873 2200 1000101 113568999
Q ss_pred cCCCeeeecCCCccccceeEEEEeeccc
Q 011709 439 LRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 439 p~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
|++++|+.++.+ ++.|.+|+....
T Consensus 282 pdg~~l~v~~~~----~~~v~v~d~~~~ 305 (331)
T 3u4y_A 282 KTETKLFISANI----SRELKVFTISGK 305 (331)
T ss_dssp TTSSEEEEEETT----TTEEEEEETTSC
T ss_pred CCCCEEEEecCC----CCcEEEEEecCC
Confidence 999988766654 789999987654
No 135
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=2.4e-19 Score=170.85 Aligned_cols=301 Identities=8% Similarity=0.025 Sum_probs=191.9
Q ss_pred ceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCceeEEEecCCCCcEEEEEeCC
Q 011709 83 NRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDS 162 (479)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~s~d 162 (479)
....+|+|+.+.+ ....+.++.++... ..+...... |...+..++|+| ++++|++++.+
T Consensus 12 ~~~~~~vg~y~~~-~~~~i~~~~~d~~~------------------g~~~~~~~~-~~~~p~~l~~sp-dg~~l~~~~~~ 70 (361)
T 3scy_A 12 SELTMLVGTYTSG-NSKGIYTFRFNEET------------------GESLPLSDA-EVANPSYLIPSA-DGKFVYSVNEF 70 (361)
T ss_dssp GEEEEEEEECCSS-SCCEEEEEEEETTT------------------CCEEEEEEE-ECSCCCSEEECT-TSSEEEEEECC
T ss_pred CceEEEEEeccCC-CCCCEEEEEEeCCC------------------CCEEEeecc-cCCCCceEEECC-CCCEEEEEEcc
Confidence 3478999999865 46778888765211 111233334 777888999999 77888888875
Q ss_pred ----CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec-CCCcEEEEecCCCccccccCCc
Q 011709 163 ----PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSATDPA 237 (479)
Q Consensus 163 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~ 237 (479)
+.|.+|++..... ....+.....+.. ....+++ ++++|++++ .++.|.+|++...........
T Consensus 71 ~~~~~~v~~~~~~~~~g--------~~~~~~~~~~~~~-~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~- 138 (361)
T 3scy_A 71 SKDQAAVSAFAFDKEKG--------TLHLLNTQKTMGA-DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD- 138 (361)
T ss_dssp SSTTCEEEEEEEETTTT--------EEEEEEEEECSSS-CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE-
T ss_pred CCCCCcEEEEEEeCCCC--------cEEEeeEeccCCC-CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce-
Confidence 7999999876310 1122223333333 3567777 777776665 688999999974322110000
Q ss_pred ccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCC----
Q 011709 238 TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS---- 313 (479)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---- 313 (479)
.....+ ... .....+...+.+++|+|++..++++...++.|.+|++.....
T Consensus 139 -~~~~~g---------------------~~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~ 193 (361)
T 3scy_A 139 -VIEFKG---------------------SGP---DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNK 193 (361)
T ss_dssp -EEECCC---------------------CCS---CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred -eEEccC---------------------CCC---CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc
Confidence 000000 000 001123345789999999955666666789999999876542
Q ss_pred C-c------eeeeccCCCCeEEEEecCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCc--eeee---cCCCCcEEEEEE
Q 011709 314 P-V------IKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSP--INKF---EGHSAAVLCVQW 380 (479)
Q Consensus 314 ~-~------~~~~~~~~~~v~~l~~sp~~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~--~~~~---~~h~~~v~~l~~ 380 (479)
. + ......+......++|+| +++++++++ .++.|.+||++. +.. +..+ ..+...+..++|
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~------g~~~~~~~~~~~~~~~~~~~~i~~ 266 (361)
T 3scy_A 194 EKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYAD------GMLDEIQTVAADTVNAQGSGDIHL 266 (361)
T ss_dssp CCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEET------TEEEEEEEEESCSSCCCCEEEEEE
T ss_pred cceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecC------CceEEeEEEecCCCCCCCcccEEE
Confidence 1 1 112234456688999999 898887777 689999999985 322 2222 334456789999
Q ss_pred ecCCCcEEEEEeC-CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEE
Q 011709 381 SPDKSSVFGSSAE-DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIK 459 (479)
Q Consensus 381 ~p~~~~llas~s~-Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~ 459 (479)
+|++++++++... ++.|.+|++.... .....+........+.+++|+|++++|++++.. ++.|.
T Consensus 267 spdg~~l~v~~~~~~~~i~v~~~~~~~-----------g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~----~~~v~ 331 (361)
T 3scy_A 267 SPDGKYLYASNRLKADGVAIFKVDETN-----------GTLTKVGYQLTGIHPRNFIITPNGKYLLVACRD----TNVIQ 331 (361)
T ss_dssp CTTSSEEEEEECSSSCEEEEEEECTTT-----------CCEEEEEEEECSSCCCEEEECTTSCEEEEEETT----TTEEE
T ss_pred CCCCCEEEEECCCCCCEEEEEEEcCCC-----------CcEEEeeEecCCCCCceEEECCCCCEEEEEECC----CCCEE
Confidence 9999987666666 6899999996311 111222222222347899999999998888754 78999
Q ss_pred EEee
Q 011709 460 IYCH 463 (479)
Q Consensus 460 i~~~ 463 (479)
+|..
T Consensus 332 v~~~ 335 (361)
T 3scy_A 332 IFER 335 (361)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9754
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=6.6e-20 Score=172.39 Aligned_cols=238 Identities=13% Similarity=0.078 Sum_probs=167.8
Q ss_pred EecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC-CCcEEEEec
Q 011709 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DKSVVLWSI 225 (479)
Q Consensus 147 ~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~-dg~i~vwd~ 225 (479)
.|.+....++++++.++.|++||..++ +....+..+.. .+ +++|+|+|++|++++. ++.|.+||+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~-~~-~~~~s~dg~~l~~~~~~~~~i~~~d~ 69 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTL------------EILNQITLGYD-FV-DTAITSDCSNVVVTSDFCQTLVQIET 69 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTC------------CEEEEEECCCC-EE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccc------------ceeeeEEccCC-cc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 355556677889999999999999887 44445555544 45 9999999997666554 899999999
Q ss_pred CCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC---e
Q 011709 226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS---C 302 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---~ 302 (479)
.++... ...+..+.....+++|+|++ .+++++..++ .
T Consensus 70 ~~~~~~---------------------------------------~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~ 109 (331)
T 3u4y_A 70 QLEPPK---------------------------------------VVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFN 109 (331)
T ss_dssp SSSSCE---------------------------------------EEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCE
T ss_pred CCCcee---------------------------------------EEecccCCCCccceEECCCC-CEEEEecCCCCccc
Confidence 754320 13344455555559999999 5566555553 9
Q ss_pred EEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCc-EEEEEeCCCc-EEEEecCCCCCCCCCCce----eeecCCCCcEE
Q 011709 303 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNS-VRMFDRRNLTSNGVGSPI----NKFEGHSAAVL 376 (479)
Q Consensus 303 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-~l~tgs~dg~-I~iwd~~~~~~~~~~~~~----~~~~~h~~~v~ 376 (479)
|.+||+.+++ .+..+. +.....+++|+| +++ +++++..++. |.+|++... ..+ .....+...+.
T Consensus 110 i~v~d~~~~~--~~~~~~-~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~------g~~~~~~~~~~~~~~~~~ 179 (331)
T 3u4y_A 110 MQSYSFLKNK--FISTIP-IPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDAD------GVLFDTGQEFISGGTRPF 179 (331)
T ss_dssp EEEEETTTTE--EEEEEE-CCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTT------CCEEEEEEEEECSSSSEE
T ss_pred EEEEECCCCC--eEEEEE-CCCCccceEECC-CCCEEEEEecCCCceEEEEEECCC------CcEeecCCccccCCCCcc
Confidence 9999999877 455543 445679999999 776 5555566688 999999852 222 11223445689
Q ss_pred EEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccce
Q 011709 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANK 456 (479)
Q Consensus 377 ~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~ 456 (479)
.++|+|+++++++++..++.|.+||+..+.. ...+.....+..+..++|+|++++++.++.+ ++
T Consensus 180 ~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~------------~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~----~~ 243 (331)
T 3u4y_A 180 NITFTPDGNFAFVANLIGNSIGILETQNPEN------------ITLLNAVGTNNLPGTIVVSRDGSTVYVLTES----TV 243 (331)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEECSSTTS------------CEEEEEEECSSCCCCEEECTTSSEEEEECSS----EE
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCCCcc------------cceeeeccCCCCCceEEECCCCCEEEEEEcC----CC
Confidence 9999999998887887899999999987411 0112333344567899999999977766554 78
Q ss_pred eEEEEeec
Q 011709 457 KIKIYCHL 464 (479)
Q Consensus 457 ~i~i~~~~ 464 (479)
.|.+|+..
T Consensus 244 ~i~~~d~~ 251 (331)
T 3u4y_A 244 DVFNFNQL 251 (331)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 89999764
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=7.5e-20 Score=173.49 Aligned_cols=254 Identities=8% Similarity=0.010 Sum_probs=177.2
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeC-------CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTD-------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 209 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~ 209 (479)
......+..++|+| +++.|++++. ++.|.+||..++ +....+.... .+.+++|+|+|+
T Consensus 37 ~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~--~~~~~~~s~dg~ 101 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTL------------EVTQAIHNDL--KPFGATINNTTQ 101 (353)
T ss_dssp EEEESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTC------------CEEEEEEESS--CCCSEEEETTTT
T ss_pred hhhccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCC------------eEEEEEecCC--CcceEEECCCCC
Confidence 34556788999999 6556666553 568999999887 3344444333 257999999998
Q ss_pred cE-EEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee
Q 011709 210 YV-LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 210 ~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (479)
++ +++..++.|.+||+.++.......... .. ..-......+.+++|+|
T Consensus 102 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~----------------------------~~---~~~~~~~~~~~~~~~s~ 150 (353)
T 3vgz_A 102 TLWFGNTVNSAVTAIDAKTGEVKGRLVLDD----------------------------RK---RTEEVRPLQPRELVADD 150 (353)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEESCC----------------------------CC---CCSSCCCCEEEEEEEET
T ss_pred EEEEEecCCCEEEEEeCCCCeeEEEEecCC----------------------------Cc---cccccCCCCCceEEECC
Confidence 55 455668999999997654321110000 00 00000112368899999
Q ss_pred CCCcEEEEE-ecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceee
Q 011709 289 SSAQEFCSV-GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (479)
Q Consensus 289 ~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~ 367 (479)
++..++++. +.++.|.+||+.+++ ....+..+...+.+++|+| ++++|++++.++.|.+||+.+ ++.+..
T Consensus 151 dg~~l~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~------~~~~~~ 221 (353)
T 3vgz_A 151 ATNTVYISGIGKESVIWVVDGGNIK--LKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTAD------NKILSR 221 (353)
T ss_dssp TTTEEEEEEESSSCEEEEEETTTTE--EEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTT------TEEEEE
T ss_pred CCCEEEEEecCCCceEEEEcCCCCc--eEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCC------CeEEEE
Confidence 995544444 358899999999887 5566554666688999999 999999999999999999987 566666
Q ss_pred ecC----CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCe
Q 011709 368 FEG----HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESC 443 (479)
Q Consensus 368 ~~~----h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~ 443 (479)
+.. +...+.+++|+|++++++++...++.|.+||+.++ . ++....... ...++|+|+++.
T Consensus 222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~--------------~~~~~~~~~-~~~~~~s~dg~~ 285 (353)
T 3vgz_A 222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG-N--------------ILAKVAAPE-SLAVLFNPARNE 285 (353)
T ss_dssp EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC-C--------------EEEEEECSS-CCCEEEETTTTE
T ss_pred EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC-c--------------EEEEEEcCC-CceEEECCCCCE
Confidence 553 55678899999999987777777799999999874 1 111111112 367999999997
Q ss_pred eeecCCCccccceeEEEEeecc
Q 011709 444 LVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 444 l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
++.++.. ++.|.+|+...
T Consensus 286 l~v~~~~----~~~v~~~d~~~ 303 (353)
T 3vgz_A 286 AYVTHRQ----AGKVSVIDAKS 303 (353)
T ss_dssp EEEEETT----TTEEEEEETTT
T ss_pred EEEEECC----CCeEEEEECCC
Confidence 6665543 88999998643
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=1e-20 Score=198.03 Aligned_cols=244 Identities=12% Similarity=0.120 Sum_probs=170.9
Q ss_pred CCceeEEEecCCCCcEEEEEeC-CC-----cEEEEECCCCCCccccCCCCCCCCcEEEeccCC-----------------
Q 011709 140 PGEVNRIRELPQNTKIVATHTD-SP-----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD----------------- 196 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~----------------- 196 (479)
...|.+++|+| +++.||+++. |+ +|++||+.++. ....+..+..
T Consensus 36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (741)
T 2ecf_A 36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQ------------TRLLVDSKVVLPGTETLSDEEKARRER 102 (741)
T ss_dssp CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCC------------EEEEECGGGTC----------------
T ss_pred CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCc------------eeEccchhhcccccccccchhhhhhhh
Confidence 45799999999 8889999988 88 89999998873 2222322221
Q ss_pred ------CceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCC
Q 011709 197 ------NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (479)
Q Consensus 197 ------~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (479)
..+.+++|+|||++|++++. +.|.+||+.++... .
T Consensus 103 ~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~--------------------------------------~ 143 (741)
T 2ecf_A 103 QRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA--------------------------------------A 143 (741)
T ss_dssp ----CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT--------------------------------------S
T ss_pred hhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc--------------------------------------e
Confidence 12689999999999999886 99999999764100 0
Q ss_pred ceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCC----------------eEEEEecCC
Q 011709 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD----------------LHCVDWNPL 334 (479)
Q Consensus 271 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------------v~~l~~sp~ 334 (479)
...+..|...+..++|+|+| +.|+.++ ++.|.+||+.++. .......+... +.+++|+|
T Consensus 144 ~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp- 218 (741)
T 2ecf_A 144 VRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGR--QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP- 218 (741)
T ss_dssp CCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTE--EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-
T ss_pred EEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCC--EEEeccCCccceeccccceeeeeccccccceEECC-
Confidence 12344567789999999999 5677766 4699999999876 33333333322 47899999
Q ss_pred CCcEEEEEeCCC---------------------------------cEEEEecCC-CCCCCCCCceeeecCCCCcEEEEEE
Q 011709 335 DDNLILTGSADN---------------------------------SVRMFDRRN-LTSNGVGSPINKFEGHSAAVLCVQW 380 (479)
Q Consensus 335 ~~~~l~tgs~dg---------------------------------~I~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~ 380 (479)
++++|++++.|+ .|++||+.. .. ...+.....|...+..++|
T Consensus 219 Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~ 294 (741)
T 2ecf_A 219 DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ----TQWIDLGKEQDIYLARVNW 294 (741)
T ss_dssp TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC----CEEECCCSCSSEEEEEEEE
T ss_pred CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc----eEEecCCCCcceEEEEEEe
Confidence 999999988765 788899875 32 1111111257788999999
Q ss_pred ecCCCcEEEEEe----CCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC--CC-CceeEEEecCCCeeeecCCCccc
Q 011709 381 SPDKSSVFGSSA----EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HS-PSSSIKFVLRESCLVDNNHGLSY 453 (479)
Q Consensus 381 ~p~~~~llas~s----~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g--h~-~~~~~~~sp~~~~l~~~~~~~~~ 453 (479)
|+|++|++++. .+..|++||+.++. ...++.... .. .+.+++|+||++.+++++.
T Consensus 295 -pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-------------~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~---- 356 (741)
T 2ecf_A 295 -RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-------------QRVLAHETSPTWVPLHNSLRFLDDGSILWSSER---- 356 (741)
T ss_dssp -EETTEEEEEEEETTSSEEEEEEEETTTCC-------------EEEEEEEECSSCCCCCSCCEECTTSCEEEEECT----
T ss_pred -CCCCEEEEEEecccCCeEEEEEEECCCCc-------------eEEEEEcCCCCcCCcCCceEECCCCeEEEEecC----
Confidence 99997554433 35789999998741 112222211 11 3568999999998887777
Q ss_pred cceeEEEEee
Q 011709 454 ANKKIKIYCH 463 (479)
Q Consensus 454 ~d~~i~i~~~ 463 (479)
+|.++||..
T Consensus 357 -~g~~~l~~~ 365 (741)
T 2ecf_A 357 -TGFQHLYRI 365 (741)
T ss_dssp -TSSCEEEEE
T ss_pred -CCccEEEEE
Confidence 777777754
No 139
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=3.7e-21 Score=187.58 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=152.6
Q ss_pred eeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCC
Q 011709 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (479)
++.+++++++.++++++.|+ +++|+............ ... .......... ..+.
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~-------~~~-----------------~~~~~~~~~~-~~~~ 92 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGD-------DPN-----------------KIVDKVQGLL-VPMK 92 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTC-------CTT-----------------CEEECCCCEE-ECCS
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccccc-------Ccc-----------------cccccCcccc-ccCC
Confidence 68999999999999999888 99988753211000000 000 0000001111 2356
Q ss_pred CceEEEEEeeCCCcEEE----EEecCCeEEEEeCCCC-----CC--C--ceeeeccCCCCeEEEEecCCCCcEEEEEeCC
Q 011709 279 DTVEDVTFCPSSAQEFC----SVGDDSCLILWDARVG-----TS--P--VIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~----s~~~dg~i~iwd~~~~-----~~--~--~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d 345 (479)
..|.+++|+|++ .+|+ +++.|+.|++||+++. .. + ....+.+|...|.+++|+|.++.+|++|+.|
T Consensus 93 ~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 93 FPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 789999999999 5677 7889999999998764 10 1 1345567999999999999448999999999
Q ss_pred CcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEE
Q 011709 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (479)
Q Consensus 346 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 425 (479)
|+|++||++. +..+....+|...|++++|+|++.+ |++|+.||.|++||++. ...... . .+.. .
T Consensus 172 g~v~iwD~~~------~~~~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~~-~~~~~~-~----~~~~---~ 235 (434)
T 2oit_A 172 GSIAVLQVTE------TVKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPTL-QEKKVI-P----CPPF---Y 235 (434)
T ss_dssp SCEEEEEESS------SEEEEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTTC-CEEEEE-C----CCTT---C
T ss_pred CeEEEEEcCC------CcceeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccCC-cccccc-c----CCcc---c
Confidence 9999999998 5556666779999999999999986 67999999999999982 111100 0 0000 0
Q ss_pred eCCCC-CceeEEEecCCCeeeecCCCc--cccceeEEEEeecc
Q 011709 426 HAGHS-PSSSIKFVLRESCLVDNNHGL--SYANKKIKIYCHLE 465 (479)
Q Consensus 426 ~~gh~-~~~~~~~sp~~~~l~~~~~~~--~~~d~~i~i~~~~~ 465 (479)
..+|. .+.+++|++++.++++.+.+- ......+++|+...
T Consensus 236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 11222 489999999988886544330 01123488887654
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=1.4e-19 Score=171.68 Aligned_cols=237 Identities=11% Similarity=0.093 Sum_probs=172.1
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCC--------ceeeeeec
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--------AEFALAMC 205 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--------~v~~l~~s 205 (479)
...+.+...+..+.|+|+...++++...++.|.+||..++ +....+..+... .+.+++|+
T Consensus 82 ~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (353)
T 3vgz_A 82 TQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG------------EVKGRLVLDDRKRTEEVRPLQPRELVAD 149 (353)
T ss_dssp EEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC------------CEEEEEESCCCCCCSSCCCCEEEEEEEE
T ss_pred EEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC------------eeEEEEecCCCccccccCCCCCceEEEC
Confidence 3344455668889999944446677777899999999887 333444443321 15789999
Q ss_pred CCCCcEEEec--CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEE
Q 011709 206 PTEPYVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (479)
Q Consensus 206 ~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (479)
|+++++++++ .++.|.+||+.+.... ..+..+...+.+
T Consensus 150 ~dg~~l~~~~~~~~~~i~~~d~~~~~~~----------------------------------------~~~~~~~~~~~~ 189 (353)
T 3vgz_A 150 DATNTVYISGIGKESVIWVVDGGNIKLK----------------------------------------TAIQNTGKMSTG 189 (353)
T ss_dssp TTTTEEEEEEESSSCEEEEEETTTTEEE----------------------------------------EEECCCCTTCCC
T ss_pred CCCCEEEEEecCCCceEEEEcCCCCceE----------------------------------------EEecCCCCccce
Confidence 9999777665 4889999999754321 223324445778
Q ss_pred EEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeecc----CCCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCCCCC
Q 011709 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTS 358 (479)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~~~~ 358 (479)
++|+|++ ..+++++.++.|.+||+.+++ ....... +...+.+++|+| +++++++++. ++.|.+||+.+
T Consensus 190 ~~~s~dg-~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~--- 262 (353)
T 3vgz_A 190 LALDSEG-KRLYTTNADGELITIDTADNK--ILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRN--- 262 (353)
T ss_dssp CEEETTT-TEEEEECTTSEEEEEETTTTE--EEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTT---
T ss_pred EEECCCC-CEEEEEcCCCeEEEEECCCCe--EEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCC---
Confidence 9999999 567888889999999999887 4444332 556788999999 7876666655 59999999987
Q ss_pred CCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEe
Q 011709 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFV 438 (479)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~s 438 (479)
++.+..+..+. ...++|+|++++++++...++.|.+||+.++ +++........+.+++|+
T Consensus 263 ---~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---------------~~~~~~~~~~~~~~~~~s 322 (353)
T 3vgz_A 263 ---GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY---------------KVVKTFDTPTHPNSLALS 322 (353)
T ss_dssp ---CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTT---------------EEEEEEECCSEEEEEEEC
T ss_pred ---CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCC---------------eEEEEEecCCCCCeEEEc
Confidence 66776666443 2579999999988877778999999999874 223333334457899999
Q ss_pred cCCCeeeecCC
Q 011709 439 LRESCLVDNNH 449 (479)
Q Consensus 439 p~~~~l~~~~~ 449 (479)
|+++.|+.+..
T Consensus 323 ~dg~~l~v~~~ 333 (353)
T 3vgz_A 323 ADGKTLYVSVK 333 (353)
T ss_dssp TTSCEEEEEEE
T ss_pred CCCCEEEEEEc
Confidence 99997666554
No 141
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=1.4e-19 Score=181.22 Aligned_cols=233 Identities=8% Similarity=0.074 Sum_probs=171.4
Q ss_pred EecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEec-
Q 011709 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI- 225 (479)
Q Consensus 147 ~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~- 225 (479)
.++| ++.++++++.|++|.+||..++ +....+..+.. +.+++|+|+|++|++++.|++|.+||+
T Consensus 144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~------------~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 144 DLDL-PNLFSVTLRDAGQIALVDGDSK------------KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp CCCG-GGEEEEEEGGGTEEEEEETTTC------------CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred ccCC-CCEEEEEEcCCCeEEEEECCCc------------eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECc
Confidence 3777 7789999999999999999887 55566664432 789999999999999999999999999
Q ss_pred -CCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee----CCCcEEEEEe-c
Q 011709 226 -QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP----SSAQEFCSVG-D 299 (479)
Q Consensus 226 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~~l~s~~-~ 299 (479)
.+... +..+. +...+..++|+| ++ .++++++ .
T Consensus 209 ~~t~~~----------------------------------------~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~ 246 (543)
T 1nir_A 209 AKEPTK----------------------------------------VAEIK-IGIEARSVESSKFKGYED-RYTIAGAYW 246 (543)
T ss_dssp SSSCEE----------------------------------------EEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEE
T ss_pred CCCCcE----------------------------------------EEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEcc
Confidence 43221 13343 345679999999 99 5566665 5
Q ss_pred CCeEEEEeCCCCCCCceeeecc----------CC-CCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee--
Q 011709 300 DSCLILWDARVGTSPVIKVEKA----------HD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-- 366 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~----------~~-~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~-- 366 (479)
+++|.+||..+.+ ++..+.. |. ..+.++.++|.+..++++...++.|.+||+... ..+.
T Consensus 247 ~~~v~v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~------~~l~~~ 318 (543)
T 1nir_A 247 PPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI------DNLTVT 318 (543)
T ss_dssp SSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTS------SSCEEE
T ss_pred CCeEEEEeccccc--cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCC------CcceeE
Confidence 8999999999887 5555543 22 378999999955677788888999999999873 3332
Q ss_pred eecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeC-C---CCC-ceeEEEecC-
Q 011709 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-G---HSP-SSSIKFVLR- 440 (479)
Q Consensus 367 ~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~-g---h~~-~~~~~~sp~- 440 (479)
.+. +...+..++|+|+++++++++..+++|.+||+.++ +. +.... | |.. ...+ ++|+
T Consensus 319 ~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l--------------~~~i~~g~~ph~g~g~~~-~~p~~ 381 (543)
T 1nir_A 319 SIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RL--------------SALVDVGKTPHPGRGANF-VHPKY 381 (543)
T ss_dssp EEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EE--------------EEEEECSSSBCCTTCEEE-EETTT
T ss_pred Eec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eE--------------EEeeccCCCCCCCCCccc-CCCCC
Confidence 343 56678899999999988877778999999999884 22 22111 2 322 2222 4687
Q ss_pred CCeeeecCCCccccceeEEEEeecc
Q 011709 441 ESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 441 ~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
+..++++..+ +++|.+|+...
T Consensus 382 g~~~~s~~~~----d~~V~v~d~~~ 402 (543)
T 1nir_A 382 GPVWSTSHLG----DGSISLIGTDP 402 (543)
T ss_dssp EEEEEEEBSS----SSEEEEEECCT
T ss_pred ccEEEeccCC----CceEEEEEeCC
Confidence 5556665534 78999998754
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=3.7e-20 Score=174.73 Aligned_cols=246 Identities=9% Similarity=0.141 Sum_probs=160.6
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC-CcEEEEecC--CC
Q 011709 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD-KSVVLWSIQ--DH 228 (479)
Q Consensus 152 ~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d-g~i~vwd~~--~~ 228 (479)
...++++++.|+.|++||+.... ...... ...|.. .+.+++|+|++++|++++.+ +.|.+|++. ++
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~---------~~~~~~-~~~~~~-~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~ 72 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEG---------ALTLTQ-VVDVPG-QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG 72 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTS---------CEEEEE-EEECSS-CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred eEEEEEeCCCCCeEEEEEECCCC---------cEEEee-eEecCC-CCceEEECCCCCEEEEeecCCCeEEEEEecCCCC
Confidence 34456666889999999996421 001122 233444 47899999999988888876 999999996 21
Q ss_pred ccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeC
Q 011709 229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA 308 (479)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 308 (479)
.. ..+..+..+. .+..++|+|++..+++++..++.|.+||+
T Consensus 73 ~~--------------------------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 73 AL--------------------------------------TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CE--------------------------------------EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ce--------------------------------------eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 11 0112233333 67899999999545555566899999999
Q ss_pred CCCC-CCceeeeccCCCCeEEEEecCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCcee--eecC-CCCcEEEEEEecC
Q 011709 309 RVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPIN--KFEG-HSAAVLCVQWSPD 383 (479)
Q Consensus 309 ~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~~~--~~~~-h~~~v~~l~~~p~ 383 (479)
..+. ....... .....+.+++|+| ++++|++++ .++.|++||+..... ...+. .+.. ....+..++|+|+
T Consensus 114 ~~~~~~~~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pd 188 (343)
T 1ri6_A 114 EDGLPVGVVDVV-EGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGH---LVAQDPAEVTTVEGAGPRHMVFHPN 188 (343)
T ss_dssp ETTEEEEEEEEE-CCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSC---EEEEEEEEEECSTTCCEEEEEECTT
T ss_pred CCCccccccccc-cCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCc---eeeecccccccCCCCCcceEEECCC
Confidence 5322 1133333 3344688999999 888777777 899999999975110 11111 2222 3457889999999
Q ss_pred CCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEE-EeCC---CCCceeEEEecCCCeeeecCCCccccceeEE
Q 011709 384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF-QHAG---HSPSSSIKFVLRESCLVDNNHGLSYANKKIK 459 (479)
Q Consensus 384 ~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~-~~~g---h~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~ 459 (479)
++++++++..++.|.+||+......... ..... ...+ ...+..++|+|++++|+.++.+ ++.|.
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~----~~~i~ 256 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIEC--------VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT----ASLIT 256 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEE--------EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT----TTEEE
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEE--------EeeccccCccccccCCccceEECCCCCEEEEEecC----CCEEE
Confidence 9987777778999999999642111000 00011 0112 2235689999999988755543 88999
Q ss_pred EEeec
Q 011709 460 IYCHL 464 (479)
Q Consensus 460 i~~~~ 464 (479)
+|+..
T Consensus 257 v~d~~ 261 (343)
T 1ri6_A 257 VFSVS 261 (343)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99876
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=1.7e-20 Score=195.78 Aligned_cols=281 Identities=12% Similarity=0.124 Sum_probs=184.1
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCC--ceeeeeecCCCCcEEEecCC--
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--AEFALAMCPTEPYVLSGGKD-- 217 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--~v~~l~~s~~~~~l~s~s~d-- 217 (479)
.+.+++|+| ++.++++ +.||+|++||+.++ +....+.+|... .|.+++|||||++|++++.+
T Consensus 18 ~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g------------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~ 83 (723)
T 1xfd_A 18 HDPEAKWIS-DTEFIYR-EQKGTVRLWNVETN------------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEP 83 (723)
T ss_dssp CCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGC------------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred cccccEEcC-CCcEEEE-eCCCCEEEEECCCC------------cEEEEeccccccccccceEEECCCCCEEEEEecCcc
Confidence 467889999 7777776 78999999999987 444555555531 37899999999999998764
Q ss_pred -------CcEEEEecCCCccccccCC------cccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCce---
Q 011709 218 -------KSVVLWSIQDHITSSATDP------ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV--- 281 (479)
Q Consensus 218 -------g~i~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--- 281 (479)
+.|.+||+.++........ ......+..+..+..... ..+.+++............+...+
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~---~~i~~~~~~~g~~~~~~~~~~~~~~~~ 160 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE---NNIYYCAHVGKQAIRVVSTGKEGVIYN 160 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET---TEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred ceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC---CeEEEEECCCCceEEEecCCCCCceEC
Confidence 7888999988754211111 111223333433333222 456777777766665555444333
Q ss_pred ---------------EEEEEeeCCCcEEEEEecCC----------------------------------eEEEEeCCCCC
Q 011709 282 ---------------EDVTFCPSSAQEFCSVGDDS----------------------------------CLILWDARVGT 312 (479)
Q Consensus 282 ---------------~~l~~~~~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~ 312 (479)
.+++|+|+| +.|++++.|+ .|++||+.+++
T Consensus 161 g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~ 239 (723)
T 1xfd_A 161 GLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT 239 (723)
T ss_dssp EECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred cccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence 789999999 5677766442 79999998877
Q ss_pred CCceeeecc------CCCCeEEEEecCCCCcEEEEEeC----CCcEEEEecCCCCCCCCCCceeeecC-CCCcEE----E
Q 011709 313 SPVIKVEKA------HDADLHCVDWNPLDDNLILTGSA----DNSVRMFDRRNLTSNGVGSPINKFEG-HSAAVL----C 377 (479)
Q Consensus 313 ~~~~~~~~~------~~~~v~~l~~sp~~~~~l~tgs~----dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~v~----~ 377 (479)
....+.. +...+.+++|+| ++++|++.+. +..|++||+.+ ++....+.. +...+. .
T Consensus 240 --~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~------g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 240 --HDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATT------GVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp --CCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTT------CCEEEEEEEECSSCCCCCCCC
T ss_pred --eeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCC------CcceEEEEeccCCEEeccCCC
Confidence 3333333 367899999999 8988877653 35799999987 555544433 334443 7
Q ss_pred EEEecCCCcEEEE-EeCCC------CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCcee-EEEecCCCeeeecCC
Q 011709 378 VQWSPDKSSVFGS-SAEDG------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSS-IKFVLRESCLVDNNH 449 (479)
Q Consensus 378 l~~~p~~~~llas-~s~Dg------~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~-~~~sp~~~~l~~~~~ 449 (479)
++|+|+|+.+++. +..|+ .|.+||+...+.... ...+ ..++..+.. ++|+||++.|+..+.
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--------~~~l---~~~~~~~~~~~~~spdg~~l~~~~~ 379 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN--------IQSI---TSGDWDVTKILAYDEKGNKIYFLST 379 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC--------CCBS---CCSSSCEEEEEEEETTTTEEEEEES
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc--------eeEe---ecCCeEEEeeeEEcCCCCEEEEEEc
Confidence 8999999986554 55677 566777323222000 0011 123444444 699999999876655
Q ss_pred Cccccc--eeEEEEeec
Q 011709 450 GLSYAN--KKIKIYCHL 464 (479)
Q Consensus 450 ~~~~~d--~~i~i~~~~ 464 (479)
. + +.+++|...
T Consensus 380 ~----~~~~~~~l~~~~ 392 (723)
T 1xfd_A 380 E----DLPRRRQLYSAN 392 (723)
T ss_dssp S----SCTTCCEEEEEC
T ss_pred C----CCCcceEEEEEe
Confidence 2 4 788899753
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=1.8e-19 Score=188.60 Aligned_cols=282 Identities=9% Similarity=0.029 Sum_probs=186.6
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
..|.+++|+| +++.|++++. +.|++||+.++.. .....+..|.. .+.+++|+|+|++|+.++ ++.|
T Consensus 109 ~~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~----------~~~~~l~~~~~-~~~~~~~SPDG~~la~~~-~~~i 174 (741)
T 2ecf_A 109 TGIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGK----------AAVRQLTHGEG-FATDAKLSPKGGFVSFIR-GRNL 174 (741)
T ss_dssp EESCCCEECT-TSSEEEEEET-TEEEEEESSSCST----------TSCCBCCCSSS-CEEEEEECTTSSEEEEEE-TTEE
T ss_pred cCcceeEECC-CCCEEEEEeC-CcEEEEECCCCCc----------ceEEEcccCCc-ccccccCCCCCCEEEEEe-CCcE
Confidence 4588999999 8888888886 8999999987610 01223445554 488999999999999887 5699
Q ss_pred EEEecCCCccccccCCc--------------------ccccCCCCCceeecCCC-C------------------------
Q 011709 221 VLWSIQDHITSSATDPA--------------------TAKSAGSSGSIIKQSPK-P------------------------ 255 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~-~------------------------ 255 (479)
.+||+.++......... .....+..+..+..... .
T Consensus 175 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 175 WVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp EEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred EEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 99999876432221110 11222333332222111 0
Q ss_pred ------CCCCCCCCCCCC-CCCceeec--CCCCceEEEEEeeCCCcEEEEEe-----cCCeEEEEeCCCCCCCceeeecc
Q 011709 256 ------GDGNDKAADGPS-VGPRGIYN--GHEDTVEDVTFCPSSAQEFCSVG-----DDSCLILWDARVGTSPVIKVEKA 321 (479)
Q Consensus 256 ------~~~~~~~~~~~~-~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~ 321 (479)
....+.+++... ........ .|...+..++| |+|. .|+.++ .+..|.+||+.+++ .......
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~-~l~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~ 330 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQ-HLSFQRQSRDQKKLDLVEVTLASNQ--QRVLAHE 330 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETT-EEEEEEEETTSSEEEEEEEETTTCC--EEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCC-EEEEEEecccCCeEEEEEEECCCCc--eEEEEEc
Confidence 011344556655 55443332 47778999999 9995 555443 35789999999987 4444444
Q ss_pred CCC----CeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEE-EEecCCCcEEEEEeCCC-
Q 011709 322 HDA----DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV-QWSPDKSSVFGSSAEDG- 395 (479)
Q Consensus 322 ~~~----~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~p~~~~llas~s~Dg- 395 (479)
+.. .+.+++|+| +++++++++.||.++||.+... +. ...+..|...|..+ .|+|+++.++++++.|+
T Consensus 331 ~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~-----~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~ 403 (741)
T 2ecf_A 331 TSPTWVPLHNSLRFLD-DGSILWSSERTGFQHLYRIDSK-----GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESA 403 (741)
T ss_dssp ECSSCCCCCSCCEECT-TSCEEEEECTTSSCEEEEECSS-----SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCT
T ss_pred CCCCcCCcCCceEECC-CCeEEEEecCCCccEEEEEcCC-----CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCC
Confidence 432 456899999 8889999999998888877631 34 77788888888887 59999998777777776
Q ss_pred -CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 396 -LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 396 -~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
.++||++...+... ....+...+.+++|+||++.|+....+.. .-..+.+++
T Consensus 404 ~~~~l~~~~~~g~~~--------------~~l~~~~~~~~~~~spdg~~l~~~~~~~~-~p~~~~l~~ 456 (741)
T 2ecf_A 404 RESQIYAVPLQGGQP--------------QRLSKAPGMHSASFARNASVYVDSWSNNS-TPPQIELFR 456 (741)
T ss_dssp TCBEEEEEETTCCCC--------------EECCCSCSEEEEEECTTSSEEEEEEEETT-EEEEEEEEE
T ss_pred ceEEEEEEEcCCCCe--------------eecccCCCceEEEECCCCCEEEEEecCCC-CCCeEEEEE
Confidence 89999987532211 11222334679999999998887654200 014566664
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=1.4e-19 Score=166.64 Aligned_cols=228 Identities=11% Similarity=0.106 Sum_probs=159.1
Q ss_pred EEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCC-CccccccCC
Q 011709 158 THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD-HITSSATDP 236 (479)
Q Consensus 158 t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~ 236 (479)
+++.|++|++||+.++ .. ..+..|.. .+.+++|+|+|++|++++ ++.|.+||+.+ +...
T Consensus 17 ~~~~~~~i~~~d~~~~------------~~-~~~~~~~~-~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~----- 76 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR------------KM-RVVWQTPE-LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE----- 76 (297)
T ss_dssp -CCCCEEEEEEETTTT------------EE-EEEEEESS-CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-----
T ss_pred CCCcceeEEEEeCCCC------------ce-eeeccCCc-ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-----
Confidence 3467889999999876 22 24556765 589999999999999987 88999999976 4321
Q ss_pred cccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC-CCceEEEEEeeCCCcEEEEEe--cCCeEEEEe--CCCC
Q 011709 237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVG--DDSCLILWD--ARVG 311 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd--~~~~ 311 (479)
.....+ ...+.+++|+|++ ..+++++ .++.+.+|. +.++
T Consensus 77 -----------------------------------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~ 120 (297)
T 2ojh_A 77 -----------------------------------KVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGG 120 (297)
T ss_dssp -----------------------------------ECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCC
T ss_pred -----------------------------------EeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCC
Confidence 222233 3678899999999 5677777 334555554 4444
Q ss_pred CCCceeeeccCCCCeEEEEecCCCCcEEE-EEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEE
Q 011709 312 TSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS 390 (479)
Q Consensus 312 ~~~~~~~~~~~~~~v~~l~~sp~~~~~l~-tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas 390 (479)
. ...+.. ...+..++|+| ++++|+ +++.|+.++||+++.. ......+..|...+.+++|+|+++.++++
T Consensus 121 ~---~~~~~~-~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 121 T---PRLMTK-NLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDID-----SGVETRLTHGEGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp C---CEECCS-SSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETT-----TCCEEECCCSSSCEEEEEECTTSSEEEEE
T ss_pred c---eEEeec-CCCccceEECC-CCCEEEEEECCCCceEEEEEECC-----CCcceEcccCCCccccceECCCCCEEEEE
Confidence 4 233333 33589999999 887766 7888999999997642 23456677788899999999999976655
Q ss_pred EeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC-CceeEEEecCCCeeeecCCCcc------ccceeEEEEee
Q 011709 391 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS-PSSSIKFVLRESCLVDNNHGLS------YANKKIKIYCH 463 (479)
Q Consensus 391 ~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~-~~~~~~~sp~~~~l~~~~~~~~------~~d~~i~i~~~ 463 (479)
+..|+.++||++...+.. ......|. .+..++|+|++.+|+.++..-. +.++.|.+|+.
T Consensus 191 ~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVDGSS--------------VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp ECTTSSCEEEEEETTSSC--------------EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred ecCCCCccEEEECCCCCC--------------cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence 656999999998742211 11223333 3788999999999888776200 01367888875
Q ss_pred cc
Q 011709 464 LE 465 (479)
Q Consensus 464 ~~ 465 (479)
..
T Consensus 257 ~~ 258 (297)
T 2ojh_A 257 DG 258 (297)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.84 E-value=2.3e-19 Score=186.69 Aligned_cols=266 Identities=12% Similarity=0.078 Sum_probs=170.9
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCC-----CCCccccCCCCCCC--CcEEEeccCCCceeeeeecC
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA-----QPNRHAVLGATNSR--PDLILTGHQDNAEFALAMCP 206 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~--~~~~~~~h~~~~v~~l~~s~ 206 (479)
.....|.+.+.+++|+| +++.||++ .++.|++||+.+ +............. -......+. ..+.+++|+|
T Consensus 114 ~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~-~~~~~~~~Sp 190 (706)
T 2z3z_A 114 TYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREF-GIEKGTFWSP 190 (706)
T ss_dssp EEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCT-TCCCSEEECT
T ss_pred EEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhc-CCCceEEECC
Confidence 34456778899999999 78888885 678999999987 53221100000000 000000011 1247999999
Q ss_pred CCCcEEEec---------------------------------CCCcEEEEecCCCccccccCCcccccCCCCCceeecCC
Q 011709 207 TEPYVLSGG---------------------------------KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP 253 (479)
Q Consensus 207 ~~~~l~s~s---------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (479)
||++|++++ .+..|.+||+.++....
T Consensus 191 Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~--------------------- 249 (706)
T 2z3z_A 191 KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY--------------------- 249 (706)
T ss_dssp TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE---------------------
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe---------------------
Confidence 999999887 33567777765432210
Q ss_pred CCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC-----eEEEEeCCCCCCCceeee-ccCCC---
Q 011709 254 KPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-----CLILWDARVGTSPVIKVE-KAHDA--- 324 (479)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~-~~~~~--- 324 (479)
+.....|...+.+++|+|++ ..+++++.++ .|.+||+.+++. ..... ..+..
T Consensus 250 -----------------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 250 -----------------LQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRF-VRTLFVETDKHYVE 310 (706)
T ss_dssp -----------------CCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEEEECSSCCC
T ss_pred -----------------eccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEEccCCCeEC
Confidence 01112466789999999999 5677766665 999999998831 12221 12222
Q ss_pred CeEEEEecC-CCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEE-EEEecCCCcEEEEEeCCC----CEE
Q 011709 325 DLHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSSAEDG----LLN 398 (479)
Q Consensus 325 ~v~~l~~sp-~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~p~~~~llas~s~Dg----~v~ 398 (479)
.+.+++|+| .++.++++++.||.++||++... +..+..+..|...+.. ++|+|+++.++++++.++ .|.
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-----~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~ 385 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-----GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFY 385 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTSSCEEEEEETT-----SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEE
T ss_pred ccCCceeecCCCCEEEEEEccCCccEEEEEECC-----CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEE
Confidence 246789998 25679999999999999988721 4667778888888877 899999998776777665 566
Q ss_pred EEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 399 IWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 399 iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.||+..+ .. .. ......+.+++|+||+++++.+..+. ..-+.|.+|+..
T Consensus 386 ~~d~~~~-~~------------~~---l~~~~~~~~~~~spdg~~l~~~~~~~-~~p~~i~l~d~~ 434 (706)
T 2z3z_A 386 CIDIKGG-KT------------KD---LTPESGMHRTQLSPDGSAIIDIFQSP-TVPRKVTVTNIG 434 (706)
T ss_dssp EEETTCC-CC------------EE---SCCSSSEEEEEECTTSSEEEEEEECS-SCSCEEEEEESS
T ss_pred EEEcCCC-Cc------------ee---ccCCCceEEEEECCCCCEEEEEecCC-CCCcEEEEEECC
Confidence 6666552 11 11 11123478899999999887764320 012568888654
No 147
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=6.1e-18 Score=161.39 Aligned_cols=255 Identities=11% Similarity=0.040 Sum_probs=165.1
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECC-CCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCc--EEEec
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE-AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY--VLSGG 215 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~--l~s~s 215 (479)
....+..++|+| ++++|++++.+ .|.+||+. ++ +...............++|+|+|++ +++++
T Consensus 38 ~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g------------~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~ 103 (365)
T 1jof_A 38 QDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPT------------EIVHEASHPIGGHPRANDADTNTRAIFLLAAK 103 (365)
T ss_dssp TTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETT------------EEEEEEEEECCSSGGGGCTTSCCEEEEEEECS
T ss_pred CCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCC------------CEEEeeEeecCCCCccEEECCCCCEEEEEEec
Confidence 445688999999 77888888887 99999997 54 1111111111112467999999994 55653
Q ss_pred -------------CCCcEEEEecCC-CccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee-cCCCCc
Q 011709 216 -------------KDKSVVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDT 280 (479)
Q Consensus 216 -------------~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~ 280 (479)
.+|.+.+|++.. +.... .+..+ ..+...
T Consensus 104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~-------------------------------------~~~~~~~~~~~~ 146 (365)
T 1jof_A 104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEK-------------------------------------NVQNYEYQENTG 146 (365)
T ss_dssp STTCCEEEEEESSSCCEEEEEEECTTCCEEE-------------------------------------EEEEEECCTTCC
T ss_pred CCcceeccceeecCCceEEEEccCCCCcCcc-------------------------------------eEeeEEeCCCCc
Confidence 689999999963 21100 00111 124457
Q ss_pred eEEEEEeeCCCcEEEEEe-cCCeEEEEeCC-CCCCCceeeec--cCCCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCC
Q 011709 281 VEDVTFCPSSAQEFCSVG-DDSCLILWDAR-VGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRN 355 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~ 355 (479)
+.+++|+|+|. +++++. .++.|++||+. +++...+.... .|...+..++|+| ++++|++++. ++.|.+|++..
T Consensus 147 ~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 147 IHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp EEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred ceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeC
Confidence 89999999994 455544 57899999998 66521122222 2456799999999 8988887775 78999998763
Q ss_pred CCCCCCCCce------eeec----CCCC------cEEEEE-EecCCCcEEEEEeCCC-----CEEEEeCCCCCccccCCC
Q 011709 356 LTSNGVGSPI------NKFE----GHSA------AVLCVQ-WSPDKSSVFGSSAEDG-----LLNIWDYEKVGKKVEQGP 413 (479)
Q Consensus 356 ~~~~~~~~~~------~~~~----~h~~------~v~~l~-~~p~~~~llas~s~Dg-----~v~iwd~~~~~~~~~~~~ 413 (479)
.. ++.. ..+. +|.. .+..++ |+|+|++++++...+. .|.+|++...+...
T Consensus 225 ~~----g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~---- 296 (365)
T 1jof_A 225 AT----HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE---- 296 (365)
T ss_dssp TT----CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE----
T ss_pred CC----CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE----
Confidence 11 3321 1222 2232 588999 9999997665443333 89999986322211
Q ss_pred CCCCCCCeeEEEeCCC-CCceeEEEec---CCCeeeecCCCccccceeEEEEeecc
Q 011709 414 RTTNYPAGLFFQHAGH-SPSSSIKFVL---RESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 414 ~~~~~~~~l~~~~~gh-~~~~~~~~sp---~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
.+......+ ..+..++|+| ++++|++++.+ ++.|.+|+...
T Consensus 297 -------~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~----~~~v~v~~~~~ 341 (365)
T 1jof_A 297 -------KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ----EGWLEIYRWKD 341 (365)
T ss_dssp -------EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS----SCEEEEEEEET
T ss_pred -------EeeeeeecCCCCcccceecCCCcCCCEEEEEEcC----CCeEEEEEEch
Confidence 111112222 3467899999 89999988874 68999997643
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=5.5e-19 Score=167.14 Aligned_cols=232 Identities=9% Similarity=0.049 Sum_probs=159.7
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE-EEecCCCcEEEEe
Q 011709 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWS 224 (479)
Q Consensus 146 l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l-~s~s~dg~i~vwd 224 (479)
+++.+ ++.++++++.+++|++||..++ +....+..+....+..++|+|+++++ +++..++.|.+||
T Consensus 5 ~~~~~-~~~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d 71 (349)
T 1jmx_B 5 PALKA-GHEYMIVTNYPNNLHVVDVASD------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID 71 (349)
T ss_dssp CCCCT-TCEEEEEEETTTEEEEEETTTT------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccccC-CCEEEEEeCCCCeEEEEECCCC------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEe
Confidence 34556 7889999999999999999887 44445554441135799999999855 4566789999999
Q ss_pred cCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec-CC-----CCceEEEEEeeCCCcEEEEEe
Q 011709 225 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GH-----EDTVEDVTFCPSSAQEFCSVG 298 (479)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h-----~~~v~~l~~~~~~~~~l~s~~ 298 (479)
+.++... ..+. .+ ...+..++|+|++ .++++++
T Consensus 72 ~~t~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~ 110 (349)
T 1jmx_B 72 LDTCKNT----------------------------------------FHANLSSVPGEVGRSMYSFAISPDG-KEVYATV 110 (349)
T ss_dssp TTTTEEE----------------------------------------EEEESCCSTTEEEECSSCEEECTTS-SEEEEEE
T ss_pred CCCCcEE----------------------------------------EEEEcccccccccccccceEECCCC-CEEEEEc
Confidence 9764331 1111 11 2236789999999 5666666
Q ss_pred cC------------CeEEEEeCCCCCCC-ceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCce
Q 011709 299 DD------------SCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 365 (479)
Q Consensus 299 ~d------------g~i~iwd~~~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~ 365 (479)
.+ +.|.+||+.+++.. .+... .+...+.+++|+| +++ +++++. .|++||+.+ ++.+
T Consensus 111 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~------~~~~ 179 (349)
T 1jmx_B 111 NPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKT------GKYT 179 (349)
T ss_dssp EEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECT-TSC-EEEESS--SEEEECTTT------CCEE
T ss_pred ccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECC-CCc-EEEccC--cEEEEeCCC------Ccee
Confidence 54 89999999875411 22333 3445688999999 888 555543 499999987 3333
Q ss_pred eeecCC--------------------------------------------------------------------CCcEEE
Q 011709 366 NKFEGH--------------------------------------------------------------------SAAVLC 377 (479)
Q Consensus 366 ~~~~~h--------------------------------------------------------------------~~~v~~ 377 (479)
..+..+ ...+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
T 1jmx_B 180 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 259 (349)
T ss_dssp EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCccee
Confidence 333221 124567
Q ss_pred EEEec-CCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccce
Q 011709 378 VQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANK 456 (479)
Q Consensus 378 l~~~p-~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~ 456 (479)
++|+| +++.++ ++ ++.|.+||+.+. +++........+.+++|+|+++.|++++. ++
T Consensus 260 ~~~sp~dg~~l~-~~--~~~v~~~d~~~~---------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~ 316 (349)
T 1jmx_B 260 GLRSPKDPNQIY-GV--LNRLAKYDLKQR---------------KLIKAANLDHTYYCVAFDKKGDKLYLGGT-----FN 316 (349)
T ss_dssp EEECSSCTTEEE-EE--ESEEEEEETTTT---------------EEEEEEECSSCCCEEEECSSSSCEEEESB-----SS
T ss_pred eEecCCCCCEEE-EE--cCeEEEEECccC---------------eEEEEEcCCCCccceEECCCCCEEEEecC-----CC
Confidence 78889 998654 55 889999999873 22222222334679999999999888776 89
Q ss_pred eEEEEeecc
Q 011709 457 KIKIYCHLE 465 (479)
Q Consensus 457 ~i~i~~~~~ 465 (479)
.|.+|+...
T Consensus 317 ~v~v~d~~~ 325 (349)
T 1jmx_B 317 DLAVFNPDT 325 (349)
T ss_dssp EEEEEETTT
T ss_pred eEEEEeccc
Confidence 999998754
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=6.7e-19 Score=165.60 Aligned_cols=236 Identities=12% Similarity=0.078 Sum_probs=162.8
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccC----CCceeeeeecCCCCcEEEec--
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----DNAEFALAMCPTEPYVLSGG-- 215 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~----~~~v~~l~~s~~~~~l~s~s-- 215 (479)
.+..++|+|+...++++++.++.|.+||+.++ +....+.... ...+.+++|+|+|++|++++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 102 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTG------------ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESP 102 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTC------------CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCC------------CeEeeEEcCCcccccccccceEECCCCCEEEEEecc
Confidence 58899999944456677778899999999887 3333333211 01357899999999888885
Q ss_pred ----------CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEE
Q 011709 216 ----------KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (479)
Q Consensus 216 ----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (479)
.++.|.+||+.++... ..+.. ...+.+++
T Consensus 103 ~~~~~~~~~~~~~~i~v~d~~~~~~~----------------------------------------~~~~~-~~~~~~~~ 141 (337)
T 1pby_B 103 VRLELTHFEVQPTRVALYDAETLSRR----------------------------------------KAFEA-PRQITMLA 141 (337)
T ss_dssp EEECSSCEEECCCEEEEEETTTTEEE----------------------------------------EEEEC-CSSCCCEE
T ss_pred cccccccccccCceEEEEECCCCcEE----------------------------------------EEEeC-CCCcceeE
Confidence 5799999999754321 22222 33467889
Q ss_pred EeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC-C------------------
Q 011709 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-N------------------ 346 (479)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d-g------------------ 346 (479)
|+|++ .+++++ ++.|.+||+.+++ ....+..+.. ...+.|+| ++.+++..+.+ +
T Consensus 142 ~s~dg-~~l~~~--~~~i~~~d~~~~~--~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 142 WARDG-SKLYGL--GRDLHVMDPEAGT--LVEDKPIQSW-EAETYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADP 214 (337)
T ss_dssp ECTTS-SCEEEE--SSSEEEEETTTTE--EEEEECSTTT-TTTTBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred ECCCC-CEEEEe--CCeEEEEECCCCc--Eeeeeecccc-CCCceeCC-CccEEeeeccCCCceeeeeeccccccccccc
Confidence 99999 445555 6889999999877 4444433320 11237888 77665554433 2
Q ss_pred -----cEEEEecCCCCCCCCCCc-eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCC
Q 011709 347 -----SVRMFDRRNLTSNGVGSP-INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 420 (479)
Q Consensus 347 -----~I~iwd~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 420 (479)
.|.+||+++ ++. ...+..+...+.+++|+|++++++ ++ ++.|.+||+...
T Consensus 215 ~~~~~~v~~~d~~~------~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~--~~~v~~~d~~~~--------------- 270 (337)
T 1pby_B 215 TAYRTGLLTMDLET------GEMAMREVRIMDVFYFSTAVNPAKTRAF-GA--YNVLESFDLEKN--------------- 270 (337)
T ss_dssp GGEEEEEEEEETTT------CCEEEEEEEECSSCEEEEEECTTSSEEE-EE--ESEEEEEETTTT---------------
T ss_pred cccccceEEEeCCC------CCceEeecCCCCCceeeEEECCCCCEEE-Ee--CCeEEEEECCCC---------------
Confidence 468999987 343 233455667888999999999754 44 789999999873
Q ss_pred eeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 421 GLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 421 ~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
+.+.....+..+.+++|+|+++.|++++. ++.|.+|+....
T Consensus 271 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~i~v~d~~~~ 311 (337)
T 1pby_B 271 ASIKRVPLPHSYYSVNVSTDGSTVWLGGA-----LGDLAAYDAETL 311 (337)
T ss_dssp EEEEEEECSSCCCEEEECTTSCEEEEESB-----SSEEEEEETTTC
T ss_pred cCcceecCCCceeeEEECCCCCEEEEEcC-----CCcEEEEECcCC
Confidence 22222233345789999999999888876 899999986543
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=1.6e-19 Score=183.58 Aligned_cols=233 Identities=9% Similarity=0.004 Sum_probs=166.2
Q ss_pred CCceeEEEecCCCCcEEEEEeC-CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC--
Q 011709 140 PGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-- 216 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~-- 216 (479)
..+|++++|+| |++.||+++. ||+++||++.++ . ...+..|....+..++|+|+ +.+++++.
T Consensus 21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g------------~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~ 85 (582)
T 3o4h_A 21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGG------------E-TVKLNREPINSVLDPHYGVG-RVILVRDVSK 85 (582)
T ss_dssp HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETT------------E-EEECCSSCCSEECEECTTCS-EEEEEEECST
T ss_pred ccchheeecCC-CCCeEEEEEccCCceeEEEEcCC------------C-cEeeecccccccccccCCCC-eEEEEeccCC
Confidence 45799999999 8888998877 999999998654 1 23344555335889999999 77777664
Q ss_pred -CCcEEEEecCC--CccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 217 -DKSVVLWSIQD--HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 217 -dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
+....+|.+.. .... ..+... ..+...+|+|++...
T Consensus 86 g~~~~~l~~~~~~~~g~~----------------------------------------~~l~~~-~~~~~~~~s~dg~~~ 124 (582)
T 3o4h_A 86 GAEQHALFKVNTSRPGEE----------------------------------------QRLEAV-KPMRILSGVDTGEAV 124 (582)
T ss_dssp TSCCEEEEEEETTSTTCC----------------------------------------EECTTS-CSBEEEEEEECSSCE
T ss_pred CCcceEEEEEeccCCCcc----------------------------------------ccccCC-CCceeeeeCCCCCeE
Confidence 55667776542 1100 111111 123466888888665
Q ss_pred EEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC----CcEEEEecCCCCCCCCCCceeeec
Q 011709 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d----g~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
+++.+.++.+.+||+.+++ ..... .+.. .+++|+| +|++|++++.+ +.|++||+.. ++ +..+.
T Consensus 125 ~~~s~~~~~~~l~d~~~g~--~~~l~-~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~------g~-~~~l~ 191 (582)
T 3o4h_A 125 VFTGATEDRVALYALDGGG--LRELA-RLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSS------GG-LRVFD 191 (582)
T ss_dssp EEEEECSSCEEEEEEETTE--EEEEE-EESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTT------CC-CEEEC
T ss_pred EEEecCCCCceEEEccCCc--EEEee-cCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCC------CC-ceEee
Confidence 5555555556699998876 33333 3333 8899999 99999988877 7899999987 33 44678
Q ss_pred CCCCcEEEEEEecCCCcEEEEEeCCC--CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEE--------Ee
Q 011709 370 GHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIK--------FV 438 (479)
Q Consensus 370 ~h~~~v~~l~~~p~~~~llas~s~Dg--~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~--------~s 438 (479)
.|.+.+..++|+|||+. |+++..++ .|++||+..+. .. ...+|.. +..++ |+
T Consensus 192 ~~~~~~~~~~~SpDG~~-l~~~~~~~~~~i~~~d~~~~~---------------~~-~~~~~~~~~~~~~~~~~~~~~~s 254 (582)
T 3o4h_A 192 SGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGS---------------VE-DLELPSKDFSSYRPTAITWLGYL 254 (582)
T ss_dssp CSSCEEEEEEECTTSCE-EEEEECSSCEEEEEECTTTCC---------------EE-ECCCSCSHHHHHCCSEEEEEEEC
T ss_pred cCCCccccceECCCCCE-EEEccCCCeeEEEEEcCCCCc---------------EE-EccCCCcChhhhhhccccceeEc
Confidence 88899999999999996 55777888 89999998731 11 3344443 55666 99
Q ss_pred cCCCeeeecCCCccccceeEEEEee
Q 011709 439 LRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 439 p~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
|||..+++++. ++.+++|..
T Consensus 255 pdg~~~~~~~~-----~g~~~l~~~ 274 (582)
T 3o4h_A 255 PDGRLAVVARR-----EGRSAVFID 274 (582)
T ss_dssp TTSCEEEEEEE-----TTEEEEEET
T ss_pred CCCcEEEEEEc-----CCcEEEEEE
Confidence 99977777777 899999987
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.83 E-value=5.5e-19 Score=191.47 Aligned_cols=265 Identities=10% Similarity=0.037 Sum_probs=189.1
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
+..+|.+.+.++.|++ + .++++++.+|++.||.+.... .....+..|.. +...+|+|+|++|+.+
T Consensus 198 ~l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g-----------~~~~~l~~~~~--~~~~~~SpDG~~la~~ 262 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDG-----------KDLRKHTSFTD--YYPRHLNTDGRRILFS 262 (1045)
T ss_dssp EEECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTS-----------CSCEECCCCCS--SCEEEEEESSSCEEEE
T ss_pred ECcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCC-----------CcceEecCCCC--cceeeEcCCCCEEEEE
Confidence 3468999999999998 4 678888889999999876431 22334455553 5678999999999888
Q ss_pred cCCCcEEEEecCCCccccccCC---------------cccccCC-CCCceeecCCCCCCCCCCCCCCCCCCCceeecCCC
Q 011709 215 GKDKSVVLWSIQDHITSSATDP---------------ATAKSAG-SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (479)
Q Consensus 215 s~dg~i~vwd~~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (479)
. ++.|.+||+...... .... ......+ ..+..+.... .+.+.+++...... ..+..|.
T Consensus 263 ~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~---~~~i~~~~~~~~~~-~~~~~~~ 336 (1045)
T 1k32_A 263 K-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS---RGQAFIQDVSGTYV-LKVPEPL 336 (1045)
T ss_dssp E-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE---TTEEEEECTTSSBE-EECSCCS
T ss_pred e-CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE---cCEEEEEcCCCCce-EEccCCC
Confidence 4 899999998433221 1111 0011112 2222222111 33444555544433 3455677
Q ss_pred C-ceEEEEEeeCCCcEEEEEecCCeEE-EEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 011709 279 D-TVEDVTFCPSSAQEFCSVGDDSCLI-LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (479)
Q Consensus 279 ~-~v~~l~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~ 356 (479)
. .+..++|+ ++ ..++.++.++.+. +||+.++. .. .+..|...+.+++|+| ++++|++++.++.|++||+.+
T Consensus 337 ~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~--~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~t- 409 (1045)
T 1k32_A 337 RIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGK--AE-KFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLET- 409 (1045)
T ss_dssp CEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCC--EE-ECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTT-
T ss_pred cceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCC--ce-EecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCC-
Confidence 7 89999999 87 6788888888898 99998776 33 3347888999999999 999999999999999999987
Q ss_pred CCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC----------CCEEEEeCCCCCccccCCCCCCCCCCeeEEEe
Q 011709 357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED----------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH 426 (479)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D----------g~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (479)
++....+.+|...+.+++|+|+|+++ ++++.+ +.|++||+..+ . ....
T Consensus 410 -----g~~~~~~~~~~~~v~~~~~SpDG~~l-a~~~~~~~~~~~~~~~~~i~l~d~~~g---------------~-~~~l 467 (1045)
T 1k32_A 410 -----GKPTVIERSREAMITDFTISDNSRFI-AYGFPLKHGETDGYVMQAIHVYDMEGR---------------K-IFAA 467 (1045)
T ss_dssp -----CCEEEEEECSSSCCCCEEECTTSCEE-EEEEEECSSTTCSCCEEEEEEEETTTT---------------E-EEEC
T ss_pred -----CceEEeccCCCCCccceEECCCCCeE-EEEecCccccccCCCCCeEEEEECCCC---------------c-EEEe
Confidence 66666666899999999999999975 555544 48999999873 1 2233
Q ss_pred CCCCC-ceeEEEecCCCeeeecCC
Q 011709 427 AGHSP-SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 427 ~gh~~-~~~~~~sp~~~~l~~~~~ 449 (479)
.+|.. +.+++|+|||++|+.++.
T Consensus 468 ~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 468 TTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp SCSSSBEEEEEECTTSCEEEEEES
T ss_pred eCCCcccCCceEcCCCCEEEEEec
Confidence 34444 678999999999988776
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.80 E-value=1.9e-18 Score=180.26 Aligned_cols=275 Identities=11% Similarity=-0.003 Sum_probs=169.4
Q ss_pred ceeEEEecCCCCcEEEEEeCC---------CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 142 EVNRIRELPQNTKIVATHTDS---------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.|.+++|+| ++++||+++.+ +.|++||+.++... .+....+|.. .+..++|||+|++|+
T Consensus 62 ~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----------~l~~~~~~~~-~~~~~~~SPdG~~la 129 (723)
T 1xfd_A 62 RAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ----------SLDPPEVSNA-KLQYAGWGPKGQQLI 129 (723)
T ss_dssp TCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE----------ECCCTTCCSC-CCSBCCBCSSTTCEE
T ss_pred ccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceE----------eccCCccccc-cccccEECCCCCEEE
Confidence 499999999 88899988774 78889999887321 0111123332 378999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCc----------------------ccccCCCCCceeecCCCC---------------
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPA----------------------TAKSAGSSGSIIKQSPKP--------------- 255 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~--------------- 255 (479)
.++. +.|++||+.++......... .....+..+..+......
T Consensus 130 ~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~ 208 (723)
T 1xfd_A 130 FIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS 208 (723)
T ss_dssp EEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred EEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc
Confidence 9885 89999999876543221110 112233333322221100
Q ss_pred -----------------CCCCCCCCCCCCCCCceeecCC------CCceEEEEEeeCCCcEEEEEec----CCeEEEEeC
Q 011709 256 -----------------GDGNDKAADGPSVGPRGIYNGH------EDTVEDVTFCPSSAQEFCSVGD----DSCLILWDA 308 (479)
Q Consensus 256 -----------------~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~l~s~~~----dg~i~iwd~ 308 (479)
....+.+++.........+..+ ...+..++|+|+| .++++.+. +..|.+||+
T Consensus 209 ~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 209 IYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp SSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEET
T ss_pred CCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeC
Confidence 0114455666555544445443 5678999999999 56666543 368999999
Q ss_pred CCCCCCceeeec-cCCCCeE----EEEecCCCCcEEEE--EeCCC------cEEEEecCCCCCCCCCC--ceeeecCCCC
Q 011709 309 RVGTSPVIKVEK-AHDADLH----CVDWNPLDDNLILT--GSADN------SVRMFDRRNLTSNGVGS--PINKFEGHSA 373 (479)
Q Consensus 309 ~~~~~~~~~~~~-~~~~~v~----~l~~sp~~~~~l~t--gs~dg------~I~iwd~~~~~~~~~~~--~~~~~~~h~~ 373 (479)
.+++ +..... .+...+. .++|+| +++.|+. +..++ .|.+||+... +. +...+..+..
T Consensus 288 ~~g~--~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~-----~~~~~~~~l~~~~~ 359 (723)
T 1xfd_A 288 TTGV--CTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPN-----SSNDNIQSITSGDW 359 (723)
T ss_dssp TTCC--EEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCC-----SSSCCCCBSCCSSS
T ss_pred CCCc--ceEEEEeccCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCC-----CCccceeEeecCCe
Confidence 9887 343332 3344443 789999 7876554 55677 4666773221 22 1445554444
Q ss_pred cEEE-EEEecCCCcEEEEEeCC--CCEEEEeCCCCCc-cccCCCCCCCCCCeeEEEeCCCC-CceeEEEecCCCeeeecC
Q 011709 374 AVLC-VQWSPDKSSVFGSSAED--GLLNIWDYEKVGK-KVEQGPRTTNYPAGLFFQHAGHS-PSSSIKFVLRESCLVDNN 448 (479)
Q Consensus 374 ~v~~-l~~~p~~~~llas~s~D--g~v~iwd~~~~~~-~~~~~~~~~~~~~~l~~~~~gh~-~~~~~~~sp~~~~l~~~~ 448 (479)
.+.. ++|+|+++.|++++..+ +.++||++...+. ....... ..+|. .+..++|+||++.|+...
T Consensus 360 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 360 DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC-----------DLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST-----------TSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecc-----------cccCCCCeEEEEECCCCCEEEEEc
Confidence 4554 69999999765555555 8899999876432 1111000 00023 367899999999887754
Q ss_pred C
Q 011709 449 H 449 (479)
Q Consensus 449 ~ 449 (479)
.
T Consensus 429 ~ 429 (723)
T 1xfd_A 429 E 429 (723)
T ss_dssp C
T ss_pred c
Confidence 4
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=4e-17 Score=154.51 Aligned_cols=215 Identities=8% Similarity=0.064 Sum_probs=144.6
Q ss_pred ecCCCceeEEEecCCCCcEEEEEe-CCCcEEEEECCCCCCccccCCCCCCCCcEEEecc--------CCCceeeeeecCC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHT-DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH--------QDNAEFALAMCPT 207 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h--------~~~~v~~l~~s~~ 207 (479)
..|...+..++|+| ++++|++++ .++.|.+|++...... .....+... ....+.+++|+|+
T Consensus 82 ~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~---------~~~~~~~~~~~~p~~~~~~~~~~~~~~spd 151 (347)
T 3hfq_A 82 VAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGAL---------TLTDTVQHSGHGPRPEQDGSHIHYTDLTPD 151 (347)
T ss_dssp EEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCE---------EEEEEEECCCCCSSTTCSSCCEEEEEECTT
T ss_pred ecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCe---------eecceeecCCCCCCccccCCCceEEEECCC
Confidence 45677899999999 777777666 7899999999643111 111122111 1123678999999
Q ss_pred CCcEEEecCCCcEEEEecCC-CccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC-CCCceEEEE
Q 011709 208 EPYVLSGGKDKSVVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVT 285 (479)
Q Consensus 208 ~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~ 285 (479)
|+.++++..++.|.+|++.. +.... ...+.. ....+..++
T Consensus 152 g~l~v~~~~~~~v~~~~~~~~g~~~~--------------------------------------~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 152 NRLAVIDLGSDKVYVYNVSDAGQLSE--------------------------------------QSVLTMEAGFGPRHLV 193 (347)
T ss_dssp SCEEEEETTTTEEEEEEECTTSCEEE--------------------------------------EEEEECCTTCCEEEEE
T ss_pred CcEEEEeCCCCEEEEEEECCCCcEEE--------------------------------------eeeEEcCCCCCCceEE
Confidence 99666677789999999972 21100 011111 223567899
Q ss_pred EeeCCCcEEEEEecCCeEEEEeCCC--CCCCceeeeccCC------CCeEEEEecCCCCcEE-EEEeCCCcEEEEecCCC
Q 011709 286 FCPSSAQEFCSVGDDSCLILWDARV--GTSPVIKVEKAHD------ADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNL 356 (479)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~------~~v~~l~~sp~~~~~l-~tgs~dg~I~iwd~~~~ 356 (479)
|+|+|..+++++..++.|.+||+.. +............ ..+..++|+| ++++| +++..++.|.+||+...
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEEEEECGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEEEEECCC
Confidence 9999955666677889999999875 3311122222222 4588999999 88876 55666899999999731
Q ss_pred CCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCC
Q 011709 357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~ 403 (479)
. ....+..+..+...+..++|+|++++|+++...++.|.+|++.
T Consensus 273 g---~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 273 G---HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp G---CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred C---cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 0 0245566666677789999999999766555566999999554
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.79 E-value=3.2e-18 Score=178.02 Aligned_cols=243 Identities=12% Similarity=0.170 Sum_probs=160.3
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCc
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~ 219 (479)
...|.+++|+|+ +.++++ . +++|++||+.++ .. ..+..+.. .+.+++|+|+|++|+++ .|+.
T Consensus 81 ~~~v~~~~~spd-~~~~~~-~-~~~i~~~d~~~~------------~~-~~l~~~~~-~~~~~~~SpdG~~la~~-~~~~ 142 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLF-T-QGGLVGFDMLAR------------KV-TYLFDTNE-ETASLDFSPVGDRVAYV-RNHN 142 (706)
T ss_dssp -CCCEEEEETTT-TEEEEE-E-TTEEEEEETTTT------------EE-EEEECCTT-CCTTCEECTTSSEEEEE-ETTE
T ss_pred ccCceeEEECCC-CeEEEE-E-CCEEEEEECCCC------------ce-EEccCCcc-cccCCcCCCCCCEEEEE-ECCe
Confidence 367999999995 545544 3 489999999876 22 23444544 47899999999999985 6899
Q ss_pred EEEEecCC-----CccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEE
Q 011709 220 VVLWSIQD-----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 220 i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (479)
|.+||+.+ +........ ....+.. .. ...+.+...+.++.|+|+| ..|
T Consensus 143 i~v~~~~~~~~~~g~~~~~~~~-------~~~~~~~-----------------g~--~~~~ee~~~~~~~~~SpDg-~~l 195 (706)
T 2z3z_A 143 LYIARGGKLGEGMSRAIAVTID-------GTETLVY-----------------GQ--AVHQREFGIEKGTFWSPKG-SCL 195 (706)
T ss_dssp EEEEECBCTTSCCCCCEESCSC-------CBTTEEE-----------------SS--CCGGGCTTCCCSEEECTTS-SEE
T ss_pred EEEEecCcccccCCCcEEeccC-------CCCCeEc-----------------cc--chhhhhcCCCceEEECCCC-CEE
Confidence 99999976 432211100 0000000 00 0112233457889999999 567
Q ss_pred EEEe---------------------------------cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEE
Q 011709 295 CSVG---------------------------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT 341 (479)
Q Consensus 295 ~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~t 341 (479)
++++ .+..|.+||+.+++...+.....|...+.+++|+| ++++|++
T Consensus 196 a~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~ 274 (706)
T 2z3z_A 196 AFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYV 274 (706)
T ss_dssp EEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEE
T ss_pred EEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEE
Confidence 7776 44689999999876211111125677899999999 9999999
Q ss_pred EeCCC-----cEEEEecCCCCCCCCCCceeeec--CCCC---cEEEEEEec--CCCcEEEEEeCCCCEEEEeCCCCCccc
Q 011709 342 GSADN-----SVRMFDRRNLTSNGVGSPINKFE--GHSA---AVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKV 409 (479)
Q Consensus 342 gs~dg-----~I~iwd~~~~~~~~~~~~~~~~~--~h~~---~v~~l~~~p--~~~~llas~s~Dg~v~iwd~~~~~~~~ 409 (479)
++.++ .|++||+.+ +.....+. .+.. .+..++|+| +++ ++++++.|+.++||++...+..
T Consensus 275 ~~~~~~~~~~~v~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~- 346 (706)
T 2z3z_A 275 AEVNRAQNECKVNAYDAET------GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRL- 346 (706)
T ss_dssp EEECTTSCEEEEEEEETTT------CCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCE-
T ss_pred EEeCCCCCeeEEEEEECCC------CceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEEEECCCCE-
Confidence 88776 899999987 42333322 1222 346789999 998 5778888999999988632211
Q ss_pred cCCCCCCCCCCeeEEEeCCC-CCcee-EEEecCCCeeeecCC
Q 011709 410 EQGPRTTNYPAGLFFQHAGH-SPSSS-IKFVLRESCLVDNNH 449 (479)
Q Consensus 410 ~~~~~~~~~~~~l~~~~~gh-~~~~~-~~~sp~~~~l~~~~~ 449 (479)
+....+| ..+.+ ++|+|+++.|+.++.
T Consensus 347 -------------~~~l~~~~~~v~~~~~~spdg~~l~~~~~ 375 (706)
T 2z3z_A 347 -------------IRQVTKGEWEVTNFAGFDPKGTRLYFEST 375 (706)
T ss_dssp -------------EEECCCSSSCEEEEEEECTTSSEEEEEES
T ss_pred -------------EEecCCCCeEEEeeeEEcCCCCEEEEEec
Confidence 1122233 33555 899999988776655
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=4e-17 Score=165.86 Aligned_cols=259 Identities=11% Similarity=0.061 Sum_probs=176.9
Q ss_pred ccceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCC-Cc
Q 011709 64 VWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHP-GE 142 (479)
Q Consensus 64 ~wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~ 142 (479)
..|..++.+.|+- .+|.++... +..+.||.++.- ...+...|. ..
T Consensus 21 ~~~~~~~~~~~DG--------~~la~~s~~----~g~~~lw~~~~g----------------------~~~~lt~~~~~~ 66 (582)
T 3o4h_A 21 AVEKYSLQGVVDG--------DKLLVVGFS----EGSVNAYLYDGG----------------------ETVKLNREPINS 66 (582)
T ss_dssp HSCEEEEEEEETT--------TEEEEEEEE----TTEEEEEEEETT----------------------EEEECCSSCCSE
T ss_pred ccchheeecCCCC--------CeEEEEEcc----CCceeEEEEcCC----------------------CcEeeecccccc
Confidence 3478899988852 344433322 345777764210 023334555 58
Q ss_pred eeEEEecCCCCcEEEEEeC---CCcEEEEECCC--CCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC--cEEEec
Q 011709 143 VNRIRELPQNTKIVATHTD---SPDVLIWDVEA--QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--YVLSGG 215 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~--~l~s~s 215 (479)
|..+.|+| + .++++++. +...+||.+.. .. . ...+..+.. +...+|+|+|+ .+++++
T Consensus 67 ~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~~~~g-----------~-~~~l~~~~~--~~~~~~s~dg~~~~~~s~~ 130 (582)
T 3o4h_A 67 VLDPHYGV-G-RVILVRDVSKGAEQHALFKVNTSRPG-----------E-EQRLEAVKP--MRILSGVDTGEAVVFTGAT 130 (582)
T ss_dssp ECEECTTC-S-EEEEEEECSTTSCCEEEEEEETTSTT-----------C-CEECTTSCS--BEEEEEEECSSCEEEEEEC
T ss_pred cccccCCC-C-eEEEEeccCCCCcceEEEEEeccCCC-----------c-cccccCCCC--ceeeeeCCCCCeEEEEecC
Confidence 99999999 5 78887775 45567766544 21 0 112222222 34668888876 344444
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
. +.+.+||+.++.. ..+..+.. .+++|+|+| +.++
T Consensus 131 ~-~~~~l~d~~~g~~-----------------------------------------~~l~~~~~--~~~~~spDG-~~la 165 (582)
T 3o4h_A 131 E-DRVALYALDGGGL-----------------------------------------RELARLPG--FGFVSDIRG-DLIA 165 (582)
T ss_dssp S-SCEEEEEEETTEE-----------------------------------------EEEEEESS--CEEEEEEET-TEEE
T ss_pred C-CCceEEEccCCcE-----------------------------------------EEeecCCC--ceEEECCCC-CEEE
Confidence 4 4555999875432 11222222 789999999 6788
Q ss_pred EEecC----CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC--cEEEEecCCCCCCCCCCceeeec
Q 011709 296 SVGDD----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--SVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 296 s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg--~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
+++.+ +.|.+||+.+++ ...+..|...+..++|+| +|++|+++..++ .|++||+.. ++.. .+.
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~---~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~------~~~~-~~~ 234 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGG---LRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRD------GSVE-DLE 234 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCC---CEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTT------CCEE-ECC
T ss_pred EEEEcCCCCeEEEEEcCCCCC---ceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCC------CcEE-Ecc
Confidence 77766 789999999887 335568888999999999 999999888899 899999987 5555 777
Q ss_pred CCCCcEEEEE--------EecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCC
Q 011709 370 GHSAAVLCVQ--------WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRE 441 (479)
Q Consensus 370 ~h~~~v~~l~--------~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~ 441 (479)
+|...+..++ |+|+| .++++++.|+.++||++ +.... .+. ..+.+++|+ ++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~---g~~~~--------------~~~--~~v~~~~~s-dg 293 (582)
T 3o4h_A 235 LPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID---GERVE--------------APQ--GNHGRVVLW-RG 293 (582)
T ss_dssp CSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET---TEEEC--------------CCS--SEEEEEEEE-TT
T ss_pred CCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE---CCeec--------------cCC--CceEEEEec-CC
Confidence 7877777777 99999 58889999999999999 22211 011 236789999 88
Q ss_pred CeeeecCC
Q 011709 442 SCLVDNNH 449 (479)
Q Consensus 442 ~~l~~~~~ 449 (479)
+.+++++.
T Consensus 294 ~~l~~~s~ 301 (582)
T 3o4h_A 294 KLVTSHTS 301 (582)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEcC
Confidence 88887665
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.77 E-value=2e-17 Score=179.36 Aligned_cols=197 Identities=10% Similarity=0.031 Sum_probs=158.5
Q ss_pred CCCceeEEEec-CCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 139 HPGEVNRIREL-PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 139 h~~~V~~l~~~-p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
|.+.|.+++|+ | ++..||+++ ++.|++|++..+. ...+..|....+..++|+ +|+.|+.++.+
T Consensus 294 ~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~-------------~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~ 357 (1045)
T 1k32_A 294 SIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTY-------------VLKVPEPLRIRYVRRGGD-TKVAFIHGTRE 357 (1045)
T ss_dssp ECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSB-------------EEECSCCSCEEEEEECSS-SEEEEEEEETT
T ss_pred cccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCc-------------eEEccCCCcceEEeeeEc-CCCeEEEEECC
Confidence 45579999999 8 888888887 7899999987652 123445554257899999 99999998888
Q ss_pred CcEE-EEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 218 KSVV-LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 218 g~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
+.|. +||+.++.. ..+.+|...+..++|+|++ ..|++
T Consensus 358 ~~l~~~~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~SpDG-~~la~ 395 (1045)
T 1k32_A 358 GDFLGIYDYRTGKA-----------------------------------------EKFEENLGNVFAMGVDRNG-KFAVV 395 (1045)
T ss_dssp EEEEEEEETTTCCE-----------------------------------------EECCCCCCSEEEEEECTTS-SEEEE
T ss_pred CceEEEEECCCCCc-----------------------------------------eEecCCccceeeeEECCCC-CEEEE
Confidence 8888 888864321 2233677889999999999 68899
Q ss_pred EecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC----------cEEEEecCCCCCCCCCCcee
Q 011709 297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----------SVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg----------~I~iwd~~~~~~~~~~~~~~ 366 (479)
++.++.|++||+.+++ .......|...+.+++|+| ++++|++++.++ .|++||+.. ++ +.
T Consensus 396 ~~~~~~v~~~d~~tg~--~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~------g~-~~ 465 (1045)
T 1k32_A 396 ANDRFEIMTVDLETGK--PTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEG------RK-IF 465 (1045)
T ss_dssp EETTSEEEEEETTTCC--EEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTT------TE-EE
T ss_pred ECCCCeEEEEECCCCc--eEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCC------Cc-EE
Confidence 9999999999999888 5555558889999999999 999998887654 899999987 44 67
Q ss_pred eecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 367 ~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.+..|...+..++|+|+|++ |++++.++...+|+...
T Consensus 466 ~l~~~~~~~~~~~~spdG~~-l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 466 AATTENSHDYAPAFDADSKN-LYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp ECSCSSSBEEEEEECTTSCE-EEEEESCCCCCEECSSS
T ss_pred EeeCCCcccCCceEcCCCCE-EEEEecccCCcCcchhc
Confidence 78888889999999999996 56788888888888654
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=178.45 Aligned_cols=278 Identities=13% Similarity=0.128 Sum_probs=170.9
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCC--CceeeeeecCCCCcEEEecC------
Q 011709 145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCPTEPYVLSGGK------ 216 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~v~~l~~s~~~~~l~s~s~------ 216 (479)
.++|+| ++.++++ +.|++|++||+.++ .....+.+|.. ..+.+++|||||++|++++.
T Consensus 20 ~~~~s~-dg~~~~~-~~d~~i~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~ 85 (719)
T 1z68_A 20 FPNWIS-GQEYLHQ-SADNNIVLYNIETG------------QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWR 85 (719)
T ss_dssp CCEESS-SSEEEEE-CTTSCEEEEESSSC------------CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSS
T ss_pred ccEECC-CCeEEEE-cCCCCEEEEEcCCC------------cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEE
Confidence 678999 6666555 46999999999987 33444444432 12789999999999998876
Q ss_pred ---CCcEEEEecCCCcc---ccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee-cCCCCce--------
Q 011709 217 ---DKSVVLWSIQDHIT---SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTV-------- 281 (479)
Q Consensus 217 ---dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v-------- 281 (479)
++.|++||+.++.. ............+..+..+... .+..+.+++.......... .++...|
T Consensus 86 ~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~---~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v 162 (719)
T 1z68_A 86 YSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYV---YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWV 162 (719)
T ss_dssp SCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEE---ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHH
T ss_pred eecceEEEEEECCCCccccceecCcccccceECCCCCEEEEE---ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccce
Confidence 79999999988765 2211111222333334333332 1345666666555543322 2222222
Q ss_pred ---------EEEEEeeCCCcEEEEEecCC----------------------------------eEEEEeCCCCCCC---c
Q 011709 282 ---------EDVTFCPSSAQEFCSVGDDS----------------------------------CLILWDARVGTSP---V 315 (479)
Q Consensus 282 ---------~~l~~~~~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~---~ 315 (479)
.+++|+|+| ..|++++.|. .|++||+.++... .
T Consensus 163 ~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~ 241 (719)
T 1z68_A 163 YEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE 241 (719)
T ss_dssp HHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE
T ss_pred eeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE
Confidence 489999999 5677776542 7889999886520 0
Q ss_pred e---eeeccCCCCeEEEEecCCCCcEEEEEeCCC----cEEEEe----cCCCCCCCCCCceeee----cCCCCcEE----
Q 011709 316 I---KVEKAHDADLHCVDWNPLDDNLILTGSADN----SVRMFD----RRNLTSNGVGSPINKF----EGHSAAVL---- 376 (479)
Q Consensus 316 ~---~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg----~I~iwd----~~~~~~~~~~~~~~~~----~~h~~~v~---- 376 (479)
+ ..+.+|...+.+++|+| ++.++++....+ .|.+|| +.+ ++....+ .+|...+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~ 314 (719)
T 1z68_A 242 VPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQT------WDCPKTQEHIEESRTGWAGGFFV 314 (719)
T ss_dssp CCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSS------EECCGGGEEEEECSSSCSSSSSC
T ss_pred ccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCC------CceEEEEecccccCCceEccccC
Confidence 0 12336888899999999 788777754332 488899 665 4444444 46777776
Q ss_pred -EEEEecCCCcEEE-EEeCCC--CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCcc
Q 011709 377 -CVQWSPDKSSVFG-SSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLS 452 (479)
Q Consensus 377 -~l~~~p~~~~lla-s~s~Dg--~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~ 452 (479)
.+.|+|+|+.++. ++..+| .|.+||+..+ .. . ....+...+..+.++ +++.|+..+....
T Consensus 315 ~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~-~~------------~--~lt~~~~~v~~~~~~-d~~~i~~~~~~~~ 378 (719)
T 1z68_A 315 STPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE-NA------------I--QITSGKWEAINIFRV-TQDSLFYSSNEFE 378 (719)
T ss_dssp CCCEECTTSSCEEEEEECTTSCEEEEEESSCST-TC------------E--ECSCSSSCEEEEEEE-CSSEEEEEESCGG
T ss_pred CccEECCCCCeEEEEEEccCCceEEEEEECCCC-ce------------E--ecccCceEEEEEEEE-eCCEEEEEEecCC
Confidence 8999999997554 344555 4666676542 11 0 111222335666667 7776665554100
Q ss_pred ccceeEEEEee
Q 011709 453 YANKKIKIYCH 463 (479)
Q Consensus 453 ~~d~~i~i~~~ 463 (479)
..++.+++|..
T Consensus 379 ~~~~~~~l~~~ 389 (719)
T 1z68_A 379 EYPGRRNIYRI 389 (719)
T ss_dssp GCTTCBEEEEE
T ss_pred CCCceEEEEEE
Confidence 01366777754
No 158
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=5.9e-16 Score=145.30 Aligned_cols=248 Identities=13% Similarity=0.135 Sum_probs=171.3
Q ss_pred CceeEEEecCCCCcEEEEEeCC------------------------CcEEEEECCCCCCccccCCCCCCCCcEEEe-ccC
Q 011709 141 GEVNRIRELPQNTKIVATHTDS------------------------PDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQ 195 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~ 195 (479)
+.|..|+++| +++++++.+.+ ++|.+||..++ +....+. ++-
T Consensus 24 ~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g------------~~~~~~~~~~~ 90 (329)
T 3fvz_A 24 GQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA------------EILQSSGKNLF 90 (329)
T ss_dssp SCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC------------CEEEEECTTTC
T ss_pred CCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC------------eEEeccCCCcc
Confidence 6799999999 78899888877 47999998876 2222332 222
Q ss_pred CCceeeeeecCCCCcEEEecCCCcEEEEecCCCccc-cccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee
Q 011709 196 DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS-SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY 274 (479)
Q Consensus 196 ~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (479)
. ...+++++++|+++++...++.|++||....... ...... . . ...-
T Consensus 91 ~-~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~-----~----------------------~----~g~~ 138 (329)
T 3fvz_A 91 Y-LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRS-----M----------------------Q----PGSD 138 (329)
T ss_dssp S-SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBT-----T----------------------B----CCCS
T ss_pred C-CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEeccc-----C----------------------C----CCCC
Confidence 2 4689999999998888888999999998643210 000000 0 0 0000
Q ss_pred cCCCCceEEEEEee-CCCcEEEEEe-cCCeEEEEeCCCCCCCceeeecc----------CCCCeEEEEecCCC-CcEEEE
Q 011709 275 NGHEDTVEDVTFCP-SSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLD-DNLILT 341 (479)
Q Consensus 275 ~~h~~~v~~l~~~~-~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~l~~sp~~-~~~l~t 341 (479)
.++......++++| ++ .++++.+ .++.|++|| .++. .+..+.. +-.....|+++| + +.++++
T Consensus 139 ~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~-~~g~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~ 213 (329)
T 3fvz_A 139 QNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFS-PSGK--FVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVA 213 (329)
T ss_dssp TTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEEC-TTSC--EEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEE
T ss_pred ccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEc-CCCC--EEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEE
Confidence 23445688999999 55 7788876 689999999 4454 3444422 223488999999 6 888888
Q ss_pred EeCCCcEEEEecCCCCCCCCCCceeee--cCCCCcEEEEEEecCCCcEEEEE-------eCCCCEEEEeCCCCCccccCC
Q 011709 342 GSADNSVRMFDRRNLTSNGVGSPINKF--EGHSAAVLCVQWSPDKSSVFGSS-------AEDGLLNIWDYEKVGKKVEQG 412 (479)
Q Consensus 342 gs~dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~llas~-------s~Dg~v~iwd~~~~~~~~~~~ 412 (479)
...++.|++||..+ ++.+..+ ..+...+..++|+| +. ++++. ..+..|++||+..+
T Consensus 214 d~~~~~I~~~~~~~------G~~~~~~~~~~~~~~~~~~~~~p-g~-~~~~~g~~~v~~~~~~~v~~~~~~~g------- 278 (329)
T 3fvz_A 214 DRENGRIQCFKTDT------KEFVREIKHASFGRNVFAISYIP-GF-LFAVNGKPYFGDQEPVQGFVMNFSSG------- 278 (329)
T ss_dssp ETTTTEEEEEETTT------CCEEEEECCTTTTTCEEEEEEET-TE-EEEEECCCCTTCSCCCCEEEEETTTC-------
T ss_pred ECCCCEEEEEECCC------CcEEEEEeccccCCCcceeeecC-CE-EEEeCCCEEeccCCCcEEEEEEcCCC-------
Confidence 88899999999986 6777776 34667889999999 32 33333 33458999998874
Q ss_pred CCCCCCCCeeEEEe---CCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 413 PRTTNYPAGLFFQH---AGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 413 ~~~~~~~~~l~~~~---~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
+++... .++.. +..++++|+|..+++... ++.|++|+....
T Consensus 279 --------~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~-----~~~I~~~~~~~~ 323 (329)
T 3fvz_A 279 --------EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH-----TNTVWKFTLTEK 323 (329)
T ss_dssp --------CEEEEECCSSSCCSSEEEEEECTTSEEEEEESS-----SCCEEEEEEEEC
T ss_pred --------eEEEEEcCCCCccCCeeEEEECCCCCEEEEECC-----CCEEEEEeCCcc
Confidence 222222 23333 789999999977776666 889999987654
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=2e-17 Score=159.01 Aligned_cols=286 Identities=10% Similarity=0.043 Sum_probs=170.1
Q ss_pred ecCCCceeE-----EEecCCCCcEEEEEeC-CCc--EEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCC
Q 011709 137 IIHPGEVNR-----IRELPQNTKIVATHTD-SPD--VLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 208 (479)
Q Consensus 137 ~~h~~~V~~-----l~~~p~~~~~lat~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~ 208 (479)
..|.+.+.. .+|+| +++.||.++. +|. |.+||+.++ .......++.. .+..+.|+|+|
T Consensus 27 t~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g------------~~~~lt~~~~~-~~~~~~~spdg 92 (388)
T 3pe7_A 27 TPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQ------------VATQLTEGRGD-NTFGGFLSPDD 92 (388)
T ss_dssp SCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTC------------EEEECCCSSCB-CSSSCEECTTS
T ss_pred cCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCC------------ceEEeeeCCCC-CccceEEcCCC
Confidence 345555555 78999 7777887776 674 888898876 22222334443 34578999999
Q ss_pred CcEEEecCCCcEEEEecCCCccccccCCccc------ccCCCCCceeec--------------------CCCCCCCCCCC
Q 011709 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATA------KSAGSSGSIIKQ--------------------SPKPGDGNDKA 262 (479)
Q Consensus 209 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~--------------------~~~~~~~~~~~ 262 (479)
+.|+.++.++.|.+||+.++........... .........+.. ........+..
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 9999999999999999988754321111000 001111111110 00112234445
Q ss_pred CCCCCCCCceeecCCCCceEEEEEee-CCCcEEEEEecC------CeEEEEeCCCCCCCceeeeccCC--CCeEEEEecC
Q 011709 263 ADGPSVGPRGIYNGHEDTVEDVTFCP-SSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAHD--ADLHCVDWNP 333 (479)
Q Consensus 263 ~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~--~~v~~l~~sp 333 (479)
++..+... ..+..+...+..++|+| ++ ..++.++.+ ..|.++|+..+. ...+..+. ..+..++|+|
T Consensus 173 ~d~~~g~~-~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~sp 247 (388)
T 3pe7_A 173 VDLKTGES-TVILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTHAEGESCTHEFWVP 247 (388)
T ss_dssp EETTTCCE-EEEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCCCTTEEEEEEEECT
T ss_pred EECCCCce-EEeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeCCCCcccccceECC
Confidence 55555543 34445667789999999 88 556555543 378888887655 23333333 3578899999
Q ss_pred CCCcEEEEEeC-CC----cEEEEecCCCCCCCCCCceeeecCCCCc---EEEEEEecCCCcEEEEE--------eCCCCE
Q 011709 334 LDDNLILTGSA-DN----SVRMFDRRNLTSNGVGSPINKFEGHSAA---VLCVQWSPDKSSVFGSS--------AEDGLL 397 (479)
Q Consensus 334 ~~~~~l~tgs~-dg----~I~iwd~~~~~~~~~~~~~~~~~~h~~~---v~~l~~~p~~~~llas~--------s~Dg~v 397 (479)
+++.|+..+. ++ .|++||+.+.. ...+..+.++... ...++|+|+|+.++++. ..+..|
T Consensus 248 -dg~~l~~~~~~~~~~~~~l~~~d~~~g~----~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 248 -DGSALVYVSYLKGSPDRFIYSADPETLE----NRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp -TSSCEEEEEEETTCCCEEEEEECTTTCC----EEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred -CCCEEEEEecCCCCCcceEEEEecCCCc----eEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence 8876654443 22 39999998722 1233344331111 12237999999765443 456789
Q ss_pred EEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC---------CceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 398 NIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS---------PSSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 398 ~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~---------~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
.+||+..+ .. ..+..+.+.- .+.+++|+|||+.|+.++.. ++...+|..
T Consensus 323 ~~~d~~~~-~~------------~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~----~g~~~l~~~ 380 (388)
T 3pe7_A 323 YVFNMKNG-TQ------------HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV----HGKPALYLA 380 (388)
T ss_dssp EEEETTTT-EE------------EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT----TSSCEEEEE
T ss_pred EEEeccCC-ce------------EEeccccCcccccccccccCCCCccCCCCCCEEEEEecC----CCceeEEEE
Confidence 99999873 11 1122222210 36789999999988877654 677777753
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=2.5e-16 Score=164.45 Aligned_cols=246 Identities=9% Similarity=0.140 Sum_probs=158.9
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCc----eeeeeecCCCCcEEEecC
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA----EFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~----v~~l~~s~~~~~l~s~s~ 216 (479)
.....++|+| ++.+|+++ ||+|++||+.++ .....+.+|.... ...++|||||++|+.++.
T Consensus 17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~ 81 (740)
T 4a5s_A 17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYG------------NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN 81 (740)
T ss_dssp CCCCCEEECS-SSEEEEEE--TTEEEEEETTTC------------CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEE
T ss_pred ccccccEECC-CCcEEEEc--CCcEEEEECCCC------------ceEEEEechhhhhhcccccceEECCCCCEEEEEEC
Confidence 3466899999 77888886 899999999988 3444566665321 133788999999999887
Q ss_pred C---------CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 217 D---------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 217 d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
+ +.+.+||+.++.. ..+..|...+...+|+
T Consensus 82 ~~~~~r~~~~~~~~~~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~S 120 (740)
T 4a5s_A 82 YVKQWRHSYTASYDIYDLNKRQL-----------------------------------------ITEERIPNNTQWVTWS 120 (740)
T ss_dssp EEECSSSCEEEEEEEEETTTTEE-----------------------------------------CCSSCCCTTEEEEEEC
T ss_pred CeeeEEEccceEEEEEECCCCcE-----------------------------------------EEcccCCCcceeeEEC
Confidence 6 5667999986543 2234466789999999
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCCceee-eccCCCCe-----------------EEEEecCCCCcEEEEEeCCC---
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADL-----------------HCVDWNPLDDNLILTGSADN--- 346 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v-----------------~~l~~sp~~~~~l~tgs~dg--- 346 (479)
|+| +.|+.+ .|+.|.+||+.++. .... ..++...+ .++.||| ||++||.++.|.
T Consensus 121 PdG-~~la~~-~~~~i~~~~~~~~~--~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v 195 (740)
T 4a5s_A 121 PVG-HKLAYV-WNNDIYVKIEPNLP--SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEV 195 (740)
T ss_dssp SST-TCEEEE-ETTEEEEESSTTSC--CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTC
T ss_pred CCC-CEEEEE-ECCeEEEEECCCCc--eEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCC
Confidence 999 556666 46899999998877 2221 22333222 3589999 999998876432
Q ss_pred ---------------------------------cEEEEecCC---CCCCCCCCceeeec------CCCCcEEEEEEecCC
Q 011709 347 ---------------------------------SVRMFDRRN---LTSNGVGSPINKFE------GHSAAVLCVQWSPDK 384 (479)
Q Consensus 347 ---------------------------------~I~iwd~~~---~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~ 384 (479)
.|++||+.. .. ......+. +|...+..++|+|++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~wspdg 271 (740)
T 4a5s_A 196 PLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT----NATSIQITAPASMLIGDHYLCDVTWATQE 271 (740)
T ss_dssp CEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS----CCCEEEECCCHHHHTSCEEEEEEEEEETT
T ss_pred ceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC----cceEEEecCCccCCCCCeEEEEEEEeCCC
Confidence 366677664 21 00222333 377789999999999
Q ss_pred CcEEEEEe---CCCCEEEEeCCCCCc---cccCCCCCCCCCCeeEEEeCCCCC------ceeEEEecCCCeee-ecCCCc
Q 011709 385 SSVFGSSA---EDGLLNIWDYEKVGK---KVEQGPRTTNYPAGLFFQHAGHSP------SSSIKFVLRESCLV-DNNHGL 451 (479)
Q Consensus 385 ~~llas~s---~Dg~v~iwd~~~~~~---~~~~~~~~~~~~~~l~~~~~gh~~------~~~~~~sp~~~~l~-~~~~~~ 451 (479)
+.++.... .+..|.+||+.++.. +... ..++ ..+|.. ...++|+|||+.++ ..+..-
T Consensus 272 ~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~---------~~l~-~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~ 341 (740)
T 4a5s_A 272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVA---------RQHI-EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE 341 (740)
T ss_dssp EEEEEEEESSTTEEEEEEEEEETTTTEEEECGG---------GCEE-EECSSSCSSSSSCCCCEECTTSSEEEEEEECTT
T ss_pred eEEEEEeCCCCCEEEEEEEECCCCccccceeEE---------EEee-eccCCceEccCcCCCceEcCCCCEEEEEEEcCC
Confidence 84332322 234799999987420 1100 1111 122222 23789999999766 444320
Q ss_pred cccceeEEEEee
Q 011709 452 SYANKKIKIYCH 463 (479)
Q Consensus 452 ~~~d~~i~i~~~ 463 (479)
....|.+|+.
T Consensus 342 --G~~~l~~~~~ 351 (740)
T 4a5s_A 342 --GYRHICYFQI 351 (740)
T ss_dssp --SCEEEEEEET
T ss_pred --CceEEEEEEC
Confidence 0345666653
No 161
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.74 E-value=1.7e-16 Score=149.01 Aligned_cols=224 Identities=12% Similarity=0.092 Sum_probs=153.9
Q ss_pred cEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCC-ceeeeeecCCCCcE-EEecCCCcEEEEecCCCccc
Q 011709 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-AEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITS 231 (479)
Q Consensus 154 ~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~v~~l~~s~~~~~l-~s~s~dg~i~vwd~~~~~~~ 231 (479)
.+|++++.++.|++||..++ +....+...... .+.+++|+|+++++ ++++.++.|.+||+.++...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred cEEEEcCCCCeEEEEECCCC------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE
Confidence 47899999999999999877 334444432211 25799999999765 56667899999999764332
Q ss_pred cccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec-C----CCCceEEEEEeeCCCcEEEEEe--------
Q 011709 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-G----HEDTVEDVTFCPSSAQEFCSVG-------- 298 (479)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----h~~~v~~l~~~~~~~~~l~s~~-------- 298 (479)
. .+. + |...+.+++|+|++ ..+++++
T Consensus 70 ~----------------------------------------~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 70 G----------------------------------------RIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELT 108 (337)
T ss_dssp E----------------------------------------EEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSS
T ss_pred e----------------------------------------eEEcCCcccccccccceEECCCC-CEEEEEecccccccc
Confidence 1 111 1 12246688999999 4566664
Q ss_pred ----cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCc
Q 011709 299 ----DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (479)
Q Consensus 299 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (479)
.++.|.+||+.+++ ....+. ....+.+++|+| ++++|+++ ++.|++||+.+ ++.+..+..+..
T Consensus 109 ~~~~~~~~i~v~d~~~~~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~------~~~~~~~~~~~~- 175 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLS--RRKAFE-APRQITMLAWAR-DGSKLYGL--GRDLHVMDPEA------GTLVEDKPIQSW- 175 (337)
T ss_dssp CEEECCCEEEEEETTTTE--EEEEEE-CCSSCCCEEECT-TSSCEEEE--SSSEEEEETTT------TEEEEEECSTTT-
T ss_pred cccccCceEEEEECCCCc--EEEEEe-CCCCcceeEECC-CCCEEEEe--CCeEEEEECCC------CcEeeeeecccc-
Confidence 57999999998876 444443 345678899999 88888877 68999999987 566666654431
Q ss_pred EEEEEEecCCCcEEEEEeCCC-----------------------CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC-C
Q 011709 375 VLCVQWSPDKSSVFGSSAEDG-----------------------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-S 430 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg-----------------------~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh-~ 430 (479)
...+.|+|++..+++++..++ .|.+||+..+. . . ......+ .
T Consensus 176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~------------~-~~~~~~~~~ 241 (337)
T 1pby_B 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE-M------------A-MREVRIMDV 241 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC-E------------E-EEEEEECSS
T ss_pred CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC-c------------e-EeecCCCCC
Confidence 112378999987665554444 36889988731 1 1 1122223 3
Q ss_pred CceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 431 PSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 431 ~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.+.+++|+|++++++++ ++.|.+|+..
T Consensus 242 ~~~~~~~s~dg~~l~~~-------~~~v~~~d~~ 268 (337)
T 1pby_B 242 FYFSTAVNPAKTRAFGA-------YNVLESFDLE 268 (337)
T ss_dssp CEEEEEECTTSSEEEEE-------ESEEEEEETT
T ss_pred ceeeEEECCCCCEEEEe-------CCeEEEEECC
Confidence 47789999999998877 3588888754
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.73 E-value=2.4e-16 Score=164.28 Aligned_cols=284 Identities=11% Similarity=-0.029 Sum_probs=172.3
Q ss_pred ceeEEEecCCCCcEEEEEeC---------CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 142 EVNRIRELPQNTKIVATHTD---------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
.|.+++|+| ++++||+++. +++|++||+.++..... . .+ . ..+..++|||||+.|+
T Consensus 61 ~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-------~---~l---~-~~~~~~~~SPDG~~la 125 (719)
T 1z68_A 61 NASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-------N---EL---P-RPIQYLCWSPVGSKLA 125 (719)
T ss_dssp TCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------S---CC---C-SSBCCEEECSSTTCEE
T ss_pred ceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccc-------e---ec---C-cccccceECCCCCEEE
Confidence 389999999 8888888876 78999999998732100 0 01 1 2378999999999999
Q ss_pred EecCCCcEEEEecCCCccccccCCc----------------------ccccCCCCCceeecCCCC---------------
Q 011709 213 SGGKDKSVVLWSIQDHITSSATDPA----------------------TAKSAGSSGSIIKQSPKP--------------- 255 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~--------------- 255 (479)
.+. |+.|++||+.++......... .....+.++..+......
T Consensus 126 ~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~ 204 (719)
T 1z68_A 126 YVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDE 204 (719)
T ss_dssp EEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSS
T ss_pred EEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCC
Confidence 886 789999999876542211110 122233333333221110
Q ss_pred -----------------CCCCCCCCCCCCCCCc--------eeecCCCCceEEEEEeeCCCcEEEEEecC----CeEEEE
Q 011709 256 -----------------GDGNDKAADGPSVGPR--------GIYNGHEDTVEDVTFCPSSAQEFCSVGDD----SCLILW 306 (479)
Q Consensus 256 -----------------~~~~~~~~~~~~~~~~--------~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~iw 306 (479)
....+.+++....... ..+.+|...+.+++|+|++ .++++.... ..|.+|
T Consensus 205 ~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~ 283 (719)
T 1z68_A 205 QYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSIC 283 (719)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEE
T ss_pred CCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEE
Confidence 0113344555444321 2234678889999999997 667664432 348889
Q ss_pred e----CCCCCCCceeee----ccCCCCeE-----EEEecCCCCcEEE--EEeCCC--cEEEEecCCCCCCCCCCceeeec
Q 011709 307 D----ARVGTSPVIKVE----KAHDADLH-----CVDWNPLDDNLIL--TGSADN--SVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 307 d----~~~~~~~~~~~~----~~~~~~v~-----~l~~sp~~~~~l~--tgs~dg--~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
| +.+++. .... ..|...+. .+.|+| +++.|+ ++..+| .|.+||+.. +. ...+.
T Consensus 284 d~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~------~~-~~~lt 353 (719)
T 1z68_A 284 DFREDWQTWDC--PKTQEHIEESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTV------EN-AIQIT 353 (719)
T ss_dssp EECSSSSSEEC--CGGGEEEEECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCS------TT-CEECS
T ss_pred cccCCCCCCce--EEEEecccccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCC------Cc-eEecc
Confidence 9 777652 2233 36677676 889999 777444 455566 466667655 33 45566
Q ss_pred CCCCcEEEEEEecCCCcEEEEEeC----CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCee
Q 011709 370 GHSAAVLCVQWSPDKSSVFGSSAE----DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCL 444 (479)
Q Consensus 370 ~h~~~v~~l~~~p~~~~llas~s~----Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l 444 (479)
.+...+..+.+. +++.+++++.. ++.++||.+...+.... +..+.....+|.. +..+.|+|+++.+
T Consensus 354 ~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~~~l~~~~~~~~~~~~~~~~s~dg~~l 424 (719)
T 1z68_A 354 SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPS--------KKCVTCHLRKERCQYYTASFSDYAKYY 424 (719)
T ss_dssp CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCC--------EEESSTTTTTTTBCBEEEEECGGGSSE
T ss_pred cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCC--------ceeccCccCCCCCceEEEEECCCCCEE
Confidence 666678888888 88877766655 58899999865211000 0000000122433 6789999999887
Q ss_pred eecCCCccccceeEEEEee
Q 011709 445 VDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 445 ~~~~~~~~~~d~~i~i~~~ 463 (479)
+....+. ....+.+|+.
T Consensus 425 ~~~~s~~--~~p~~~l~d~ 441 (719)
T 1z68_A 425 ALVCYGP--GIPISTLHDG 441 (719)
T ss_dssp EEEECCB--SSCEEEEECS
T ss_pred EEEcCCC--CCCeEEEEEC
Confidence 7543321 1234566643
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.72 E-value=1.7e-14 Score=137.12 Aligned_cols=215 Identities=9% Similarity=0.125 Sum_probs=135.0
Q ss_pred CCCceeEEEecCCCCcEEEE-EeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccC----------CCceeeeeecCC
Q 011709 139 HPGEVNRIRELPQNTKIVAT-HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----------DNAEFALAMCPT 207 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~----------~~~v~~l~~s~~ 207 (479)
+...+..+++ ++++|++ ...++.|.+|++........ .. ....+. ...+.+++|+|+
T Consensus 98 ~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~--------~~-~~~~~~g~~~~~~~~~~~~~~~~~~spd 165 (361)
T 3scy_A 98 MGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLP--------AS-DVIEFKGSGPDKERQTMPHLHCVRITPD 165 (361)
T ss_dssp SSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCS--------CS-EEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred CCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcc--------cc-eeEEccCCCCCccccCCCcceEEEECCC
Confidence 4556777777 4444544 44688999999975422111 11 111111 112478999999
Q ss_pred CCcEEEe-cCCCcEEEEecCCCcc----c-cccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCce
Q 011709 208 EPYVLSG-GKDKSVVLWSIQDHIT----S-SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV 281 (479)
Q Consensus 208 ~~~l~s~-s~dg~i~vwd~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 281 (479)
|++|+++ ..++.|.+|++..... . .... .........+...+
T Consensus 166 g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~--------------------------------~~~~~~~~~~~~~~ 213 (361)
T 3scy_A 166 GKYLLADDLGTDQIHKFNINPNANADNKEKFLTK--------------------------------GTPEAFKVAPGSGP 213 (361)
T ss_dssp SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE--------------------------------EEEEEEECCTTCCE
T ss_pred CCEEEEEeCCCCEEEEEEEcCCCCcccccceeec--------------------------------ccccceecCCCCCC
Confidence 9966554 4589999999864321 0 0000 00001111234457
Q ss_pred EEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeee---ccCCCCeEEEEecCCCCcEEEEEeCC--CcEEEEecCCC
Q 011709 282 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSAD--NSVRMFDRRNL 356 (479)
Q Consensus 282 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~l~tgs~d--g~I~iwd~~~~ 356 (479)
..++|+|++..++++...++.|.+||+.++....+... ..+......++|+| ++++|++++.+ +.|.+|++...
T Consensus 214 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~ 292 (361)
T 3scy_A 214 RHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDET 292 (361)
T ss_dssp EEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTT
T ss_pred eEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCC
Confidence 89999999954444444789999999986652122222 23345578999999 89988776654 89999999632
Q ss_pred CCCCCCC--ceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCC
Q 011709 357 TSNGVGS--PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 357 ~~~~~~~--~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~ 403 (479)
. +. .+..+.. ...+.+++|+|++++|++++..++.|.+|++.
T Consensus 293 ~----g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 293 N----GTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp T----CCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred C----CcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 1 22 4444444 55788999999999776555578999997654
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=1.5e-15 Score=143.32 Aligned_cols=198 Identities=12% Similarity=0.140 Sum_probs=136.9
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccC-----CCceeeeeecCCCCcEEEecC
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-----DNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~~v~~l~~s~~~~~l~s~s~ 216 (479)
.+..++|+|+...+++++..++.|.+||+.++ +....+..+. ...+.+++|+|+|++|++++.
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 111 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC------------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 111 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTT------------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCC------------cEEEEEEcccccccccccccceEECCCCCEEEEEcc
Confidence 67899999944345667777899999999877 2333333221 122679999999999998886
Q ss_pred C------------CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEE
Q 011709 217 D------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 284 (479)
Q Consensus 217 d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 284 (479)
+ +.|.+||+.++.... .+..+. +...+.++
T Consensus 112 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~-------------------------------------~~~~~~-~~~~~~~~ 153 (349)
T 1jmx_B 112 PTQRLNDHYVVKPPRLEVFSTADGLEAK-------------------------------------PVRTFP-MPRQVYLM 153 (349)
T ss_dssp EEEECSSCEEECCCEEEEEEGGGGGGBC-------------------------------------CSEEEE-CCSSCCCE
T ss_pred cccccccccccCCCeEEEEECCCccccc-------------------------------------eeeecc-CCCcccce
Confidence 5 899999997532211 012222 23357889
Q ss_pred EEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccC------------------------------------------
Q 011709 285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH------------------------------------------ 322 (479)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------------------------ 322 (479)
+|+|++. ++ +++. .|.+||+.+++ ....+..+
T Consensus 154 ~~s~dg~-l~-~~~~--~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 227 (349)
T 1jmx_B 154 RAADDGS-LY-VAGP--DIYKMDVKTGK--YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 227 (349)
T ss_dssp EECTTSC-EE-EESS--SEEEECTTTCC--EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C
T ss_pred eECCCCc-EE-EccC--cEEEEeCCCCc--eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcc
Confidence 9999994 44 4443 49999998876 33332211
Q ss_pred --------------------------CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEE
Q 011709 323 --------------------------DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (479)
Q Consensus 323 --------------------------~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 376 (479)
...+.+++|+|.++++++++ ++.|.+||+.+ ++.+..+.. ...+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~------~~~~~~~~~-~~~~~ 298 (349)
T 1jmx_B 228 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ------RKLIKAANL-DHTYY 298 (349)
T ss_dssp CCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT------TEEEEEEEC-SSCCC
T ss_pred ccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc------CeEEEEEcC-CCCcc
Confidence 11345667777456777777 88999999987 566666653 34578
Q ss_pred EEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 377 ~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+++|+|++++++ +++.++.|.+||+.+.
T Consensus 299 ~~~~s~dg~~l~-~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 299 CVAFDKKGDKLY-LGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEECSSSSCEE-EESBSSEEEEEETTTT
T ss_pred ceEECCCCCEEE-EecCCCeEEEEecccc
Confidence 999999999765 5677899999999873
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=1.1e-14 Score=133.78 Aligned_cols=240 Identities=11% Similarity=0.153 Sum_probs=166.2
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEe------ccCCCceeeeee-cCCCCc
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT------GHQDNAEFALAM-CPTEPY 210 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~h~~~~v~~l~~-s~~~~~ 210 (479)
+|-..+.++++.+ +++++++.+.++.|++||.... ....+. +|.. .+.++++ .+++..
T Consensus 27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~-------------~~~~~~~~~~~~~~~~-~p~~i~~~~~~g~l 91 (286)
T 1q7f_A 27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGR-------------FKFQFGECGKRDSQLL-YPNRVAVVRNSGDI 91 (286)
T ss_dssp TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSC-------------EEEEECCBSSSTTCBS-SEEEEEEETTTTEE
T ss_pred CccCCCceEEECC-CCCEEEEECCCCEEEEECCCCc-------------EEEEecccCCCccccc-CceEEEEEcCCCeE
Confidence 3445688999998 6788888888999999997632 112221 2223 3679999 467766
Q ss_pred EEEecC-CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee-cCCCCceEEEEEee
Q 011709 211 VLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCP 288 (479)
Q Consensus 211 l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~ 288 (479)
+++... ++.|.+||... ... ..+ ..+...+.++++++
T Consensus 92 ~v~~~~~~~~i~~~d~~g-~~~----------------------------------------~~~~~~~~~~~~~i~~~~ 130 (286)
T 1q7f_A 92 IVTERSPTHQIQIYNQYG-QFV----------------------------------------RKFGATILQHPRGVTVDN 130 (286)
T ss_dssp EEEECGGGCEEEEECTTS-CEE----------------------------------------EEECTTTCSCEEEEEECT
T ss_pred EEEcCCCCCEEEEECCCC-cEE----------------------------------------EEecCccCCCceEEEEeC
Confidence 666543 88999999532 110 111 12335678999999
Q ss_pred CCCcEEEEEecCCeEEEEeCCCCCCCceeeec--cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee
Q 011709 289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
++ .++++...++.|.+||.. +. .+..+. .+...+..++++| +++++++...++.|++||.. +..+.
T Consensus 131 ~g-~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-------g~~~~ 198 (286)
T 1q7f_A 131 KG-RIIVVECKVMRVIIFDQN-GN--VLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-------GQYLR 198 (286)
T ss_dssp TS-CEEEEETTTTEEEEECTT-SC--EEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-------CCEEE
T ss_pred CC-CEEEEECCCCEEEEEcCC-CC--EEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCC-------CCEEE
Confidence 98 678887888999999965 33 333332 3446789999999 88888888889999999975 35566
Q ss_pred eecCC--CCcEEEEEEecCCCcEEEEEeCCC-CEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCe
Q 011709 367 KFEGH--SAAVLCVQWSPDKSSVFGSSAEDG-LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESC 443 (479)
Q Consensus 367 ~~~~h--~~~v~~l~~~p~~~~llas~s~Dg-~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~ 443 (479)
.+..+ ...+..+++++++. ++++...++ .|.+||... ... ..+..+.+...+.+++++|++..
T Consensus 199 ~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g--~~~-----------~~~~~~~~~~~~~~i~~~~~g~l 264 (286)
T 1q7f_A 199 QIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDG--QLI-----------SALESKVKHAQCFDVALMDDGSV 264 (286)
T ss_dssp EESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTS--CEE-----------EEEEESSCCSCEEEEEEETTTEE
T ss_pred EEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCC--CEE-----------EEEcccCCCCcceeEEECCCCcE
Confidence 66443 36789999999997 677777775 999999542 111 11112222233679999999987
Q ss_pred eeecCCCccccceeEEEEeecc
Q 011709 444 LVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 444 l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
+++ +. ++.|++|+...
T Consensus 265 ~vs-~~-----~~~v~v~~~~~ 280 (286)
T 1q7f_A 265 VLA-SK-----DYRLYIYRYVQ 280 (286)
T ss_dssp EEE-ET-----TTEEEEEECSC
T ss_pred EEE-CC-----CCeEEEEEccc
Confidence 766 45 78999997543
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.66 E-value=8.4e-15 Score=139.57 Aligned_cols=205 Identities=6% Similarity=0.035 Sum_probs=134.5
Q ss_pred eeeeeecCCCCcEEEecCCCcEEEEecC-CCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC
Q 011709 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQ-DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (479)
+..++|+|+|++|++++.+ .|.+|++. ++..... .....+
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~--------------------------------------~~~~~~ 82 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE--------------------------------------ASHPIG 82 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE--------------------------------------EEEECC
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe--------------------------------------eEeecC
Confidence 6799999999999998887 99999986 3321100 001111
Q ss_pred CCceEEEEEeeCCCc-EEEEEe-------------cCCeEEEEeCCC-CCCCceeeec----cCCCCeEEEEecCCCCcE
Q 011709 278 EDTVEDVTFCPSSAQ-EFCSVG-------------DDSCLILWDARV-GTSPVIKVEK----AHDADLHCVDWNPLDDNL 338 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~-~l~s~~-------------~dg~i~iwd~~~-~~~~~~~~~~----~~~~~v~~l~~sp~~~~~ 338 (479)
+.+..++|+|++.. +++++. .+|.+.+|++.. ++ +..... .+...+.+++|+| ++++
T Consensus 83 -g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~sp-dG~~ 158 (365)
T 1jof_A 83 -GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK--LEKNVQNYEYQENTGIHGMVFDP-TETY 158 (365)
T ss_dssp -SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC--EEEEEEEEECCTTCCEEEEEECT-TSSE
T ss_pred -CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc--CcceEeeEEeCCCCcceEEEECC-CCCE
Confidence 12445789999843 344553 689999999974 44 222222 2456799999999 8988
Q ss_pred EEEEeC-CCcEEEEecC-CCCCCCCCCc--eeeec--CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC-CccccC
Q 011709 339 ILTGSA-DNSVRMFDRR-NLTSNGVGSP--INKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV-GKKVEQ 411 (479)
Q Consensus 339 l~tgs~-dg~I~iwd~~-~~~~~~~~~~--~~~~~--~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~-~~~~~~ 411 (479)
|++++. ++.|++||+. + ++. +..+. .|...+..++|+|++++++++...++.|.+|++... +.....
T Consensus 159 l~~~~~~~~~v~~~~~~~~------g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 232 (365)
T 1jof_A 159 LYSADLTANKLWTHRKLAS------GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT 232 (365)
T ss_dssp EEEEETTTTEEEEEEECTT------SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred EEEEcCCCCEEEEEEECCC------CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEc
Confidence 887764 6899999998 4 332 23333 245679999999999976555555789999987531 211000
Q ss_pred CCCCCCCCCeeEEEe----CCCC-------CceeEE-EecCCCeeeecCCCccccce-----eEEEEeec
Q 011709 412 GPRTTNYPAGLFFQH----AGHS-------PSSSIK-FVLRESCLVDNNHGLSYANK-----KIKIYCHL 464 (479)
Q Consensus 412 ~~~~~~~~~~l~~~~----~gh~-------~~~~~~-~sp~~~~l~~~~~~~~~~d~-----~i~i~~~~ 464 (479)
...+... .||. .+..++ |+|||++|++++.+ .+ .|.+|+..
T Consensus 233 --------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~----~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 233 --------HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA----NKFELQGYIAGFKLR 290 (365)
T ss_dssp --------EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE----SSTTSCCEEEEEEEC
T ss_pred --------cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC----CCCCCCCeEEEEEEC
Confidence 0000001 1333 367899 99999998876653 33 89999764
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=7e-14 Score=144.18 Aligned_cols=193 Identities=9% Similarity=0.052 Sum_probs=128.6
Q ss_pred EEEec--CCCCcE-EEEEeC-CCcEEEEECC--C-CCCccccCCCCCCCCcEEEec-----cCCCceeeeeecCCCCcEE
Q 011709 145 RIREL--PQNTKI-VATHTD-SPDVLIWDVE--A-QPNRHAVLGATNSRPDLILTG-----HQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 145 ~l~~~--p~~~~~-lat~s~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~-----h~~~~v~~l~~s~~~~~l~ 212 (479)
...|+ | +++. ||.++. +..|.+|++. . +. ...+.. |.. .+..++|+|||+.|+
T Consensus 81 ~~~~~~SP-Dg~~~la~~~~~~~~l~~~~~~~~g~~~-------------~~~l~~~~~~~~~~-~~~~~~~spDg~~l~ 145 (662)
T 3azo_A 81 PWAGVPRP-AGGPLLVFTHFGDQRLYAFEPDAPGGAV-------------PRPLTPVSAVGGGL-RWADPVLLPERGEVW 145 (662)
T ss_dssp CEEEECCS-SSSCEEEEEBTTTCCEEEECTTSTTCCC-------------CEECSCCCCSTTCE-EEEEEEEETTTTEEE
T ss_pred cceeeeec-CCCeEEEEEECCCCeEEEEcCCCCCCCC-------------CEeccCCccCCCCc-cccCcEECCCCCEEE
Confidence 45555 7 5565 665544 5677777765 2 31 122233 333 478999999999999
Q ss_pred EecCC----------CcEEEEecCC------CccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec-
Q 011709 213 SGGKD----------KSVVLWSIQD------HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN- 275 (479)
Q Consensus 213 s~s~d----------g~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 275 (479)
+++.| ..|.+||+.+ +.. ..+.
T Consensus 146 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----------------------------------------~~l~~ 184 (662)
T 3azo_A 146 CMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-----------------------------------------RELSD 184 (662)
T ss_dssp EEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-----------------------------------------EESSC
T ss_pred EEEecccCCCCCCceeEEEEEECCCCccccCCce-----------------------------------------eEEEe
Confidence 88877 5899999875 211 2233
Q ss_pred CCCCceEEEEEeeCCCcEEEEEecC--------CeEEEEeCC-CCCC-CceeeeccCCCCeEEEEecCCCCcEEEEEeCC
Q 011709 276 GHEDTVEDVTFCPSSAQEFCSVGDD--------SCLILWDAR-VGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345 (479)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d 345 (479)
.+...+..++|+|+| ..|+.++.+ ..|.+||+. ++.. ........|...+..++|+| +++++++++.+
T Consensus 185 ~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~ 262 (662)
T 3azo_A 185 DAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRT 262 (662)
T ss_dssp SCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTT
T ss_pred cCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCC
Confidence 345677889999999 566666544 479999998 5621 13334445678899999999 88888888888
Q ss_pred C--cEEEEecCCCCCCCCCCceeeecCCCCc--------EEEEEEecCCCcEEEEEeCCCCEEEEeCC
Q 011709 346 N--SVRMFDRRNLTSNGVGSPINKFEGHSAA--------VLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 346 g--~I~iwd~~~~~~~~~~~~~~~~~~h~~~--------v~~l~~~p~~~~llas~s~Dg~v~iwd~~ 403 (479)
+ .|.+||+.. ++.......+... +..++|+|++. ++++++. +.++||.+.
T Consensus 263 ~~~~l~~~~~~~------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 263 GWWNLHRVDPAT------GAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILD 322 (662)
T ss_dssp SSCEEEEECTTT------CCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEE
T ss_pred CCeEEEEEECCC------CceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-CccEEEEEE
Confidence 8 566666544 3333323333222 56789999888 6778888 999999543
No 168
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.64 E-value=1.6e-13 Score=126.63 Aligned_cols=231 Identities=10% Similarity=0.057 Sum_probs=157.5
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
..+..-...++|+|+...+++++..++.|+.||..++ ...+..+.. .+.+++++++|+++++...
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--------------~~~~~~~~~-~~~~l~~~~dg~l~v~~~~ 88 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--------------LSPEMHPSH-HQNGHCLNKQGHLIACSHG 88 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--------------EEEEESSCS-SEEEEEECTTCCEEEEETT
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--------------eEEEECCCC-CcceeeECCCCcEEEEecC
Confidence 3455667899999944348999999999999998764 223444444 4789999999998887777
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC-CCCceEEEEEeeCCCcEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~ 295 (479)
++.|.+||..++...... ....+ ....+++++++|+| .+++
T Consensus 89 ~~~i~~~d~~~g~~~~~~-------------------------------------~~~~~~~~~~~~~i~~d~~G-~l~v 130 (296)
T 3e5z_A 89 LRRLERQREPGGEWESIA-------------------------------------DSFEGKKLNSPNDVCLAPDG-SLWF 130 (296)
T ss_dssp TTEEEEECSTTCCEEEEE-------------------------------------CEETTEECCCCCCEEECTTS-CEEE
T ss_pred CCeEEEEcCCCCcEEEEe-------------------------------------eccCCCCCCCCCCEEECCCC-CEEE
Confidence 789999998654321100 00001 12346789999998 6777
Q ss_pred EE----e-------------cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCC
Q 011709 296 SV----G-------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (479)
Q Consensus 296 s~----~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~ 358 (479)
+. + ..+.|..+|.. +. ......+....+.++|+| +++++++.+.++.|++||+...
T Consensus 131 td~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~-- 203 (296)
T 3e5z_A 131 SDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT---LSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNAR-- 203 (296)
T ss_dssp EECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC---EEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSS--
T ss_pred ECCccccccccccccccccCCCcEEEEECCC-CC---EEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCC--
Confidence 63 2 13456666655 33 333445667789999999 8888888888899999999721
Q ss_pred CCCCCc---eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeE
Q 011709 359 NGVGSP---INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSI 435 (479)
Q Consensus 359 ~~~~~~---~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~ 435 (479)
+.. ...+..+...+.+++++++|. ++++. ++.|.+||... .++.....+..+.++
T Consensus 204 ---g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g----------------~~~~~~~~~~~~~~~ 261 (296)
T 3e5z_A 204 ---GETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDG----------------DELGRVLTPQTTSNL 261 (296)
T ss_dssp ---SCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTS----------------CEEEEEECSSCCCEE
T ss_pred ---CcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCC----------------CEEEEEECCCCceeE
Confidence 232 223334556678899999998 56555 78899999763 122222233338899
Q ss_pred EE-ecCCCeeeecCC
Q 011709 436 KF-VLRESCLVDNNH 449 (479)
Q Consensus 436 ~~-sp~~~~l~~~~~ 449 (479)
+| +|+++.|+.++.
T Consensus 262 ~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 262 CFGGPEGRTLYMTVS 276 (296)
T ss_dssp EEESTTSCEEEEEET
T ss_pred EEECCCCCEEEEEcC
Confidence 99 588888888777
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.64 E-value=3.9e-15 Score=143.25 Aligned_cols=276 Identities=10% Similarity=-0.003 Sum_probs=160.5
Q ss_pred ceeEEEecCCCCcEEEEEeCC---CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC
Q 011709 142 EVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg 218 (479)
.+..++|+| +++.||..... ..|.+||+.++. . ..+..+.......+.|+|+|++|+.++.++
T Consensus 37 ~~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~------------~-~~l~~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (396)
T 3c5m_A 37 YFYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQ------------A-VQLTEGKGDNTFGGFISTDERAFFYVKNEL 102 (396)
T ss_dssp CTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTE------------E-EECCCSSCBCTTTCEECTTSSEEEEEETTT
T ss_pred eeecCcCCC-CCCEEEEEEecCCCceEEEEECCCCc------------E-EEeecCCCCccccceECCCCCEEEEEEcCC
Confidence 377789999 67776665443 368888987762 1 122222222233488999999999999899
Q ss_pred cEEEEecCCCccccccCCcccc-----------------------cCCCCCceeecC---CCCCCCCCCCCCCCCCCCce
Q 011709 219 SVVLWSIQDHITSSATDPATAK-----------------------SAGSSGSIIKQS---PKPGDGNDKAADGPSVGPRG 272 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 272 (479)
.|.+||+.++............ ........+... .......+.+++........
T Consensus 103 ~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 182 (396)
T 3c5m_A 103 NLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV 182 (396)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE
T ss_pred cEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe
Confidence 9999999876432211100000 000000000000 00122334445555544433
Q ss_pred eecCCCCceEEEEEee-CCCcEEEEEecC------CeEEEEeCCCCCCCceeeeccC-CCCeEEEEecCCCCcEEEEEeC
Q 011709 273 IYNGHEDTVEDVTFCP-SSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSA 344 (479)
Q Consensus 273 ~~~~h~~~v~~l~~~~-~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~l~tgs~ 344 (479)
+..+...+..+.|+| ++ ..++.++.+ ..|.+||+..+. ........ ...+..++|+| ++++|+.++.
T Consensus 183 -~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~ 257 (396)
T 3c5m_A 183 -IHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIP-DGSAMAYVSY 257 (396)
T ss_dssp -EEEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECT-TSSCEEEEEE
T ss_pred -eccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEECC-CCCEEEEEec
Confidence 334667789999999 66 445544433 368889987655 22222211 33588899999 8887776654
Q ss_pred C-----CcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEec-CCCcEEEEEe----------------CCCCEEEEeC
Q 011709 345 D-----NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSA----------------EDGLLNIWDY 402 (479)
Q Consensus 345 d-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~llas~s----------------~Dg~v~iwd~ 402 (479)
+ +.|++||+.. ++... +.... ... +.|+| +++. +++++ .++.|.+||+
T Consensus 258 ~~~~~~~~l~~~d~~~------g~~~~-l~~~~-~~~-~~~s~~dg~~-l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 258 FKGQTDRVIYKANPET------LENEE-VMVMP-PCS-HLMSNFDGSL-MVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp ETTTCCEEEEEECTTT------CCEEE-EEECC-SEE-EEEECSSSSE-EEEEECCC----------CCCCCCEEEEEET
T ss_pred CCCCccceEEEEECCC------CCeEE-eeeCC-CCC-CCccCCCCce-EEEecCCcceeeccccccccCCCCcEEEEec
Confidence 4 4499999986 33322 21111 133 89999 9985 55543 3478999998
Q ss_pred CCCCccccCCCCCCCCCCeeEEEeCCC---------CCceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 403 EKVGKKVEQGPRTTNYPAGLFFQHAGH---------SPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~~~~gh---------~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
..+.. ..+..+.+. ..+..++|+|+++.|+.++.. ++...+|..
T Consensus 328 ~~~~~-------------~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~----~~~~~l~~~ 380 (396)
T 3c5m_A 328 KAKSA-------------QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF----EGVPAIYIA 380 (396)
T ss_dssp TTTBC-------------CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT----TSSCEEEEE
T ss_pred ccCce-------------EEccCCCCccccccccccCCCCCceEccCCCeEEEEecC----CCCceEEEE
Confidence 76311 112222210 024678999999988876653 566666643
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=1.8e-14 Score=148.57 Aligned_cols=240 Identities=11% Similarity=0.059 Sum_probs=152.9
Q ss_pred EecCCCceeEEEecCCCCcEEEEE--eCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCcee---------eeee
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATH--TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEF---------ALAM 204 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~---------~l~~ 204 (479)
..+|...|..+++++ +.-++++. +.++...||....+. ....+..|... +. ...|
T Consensus 19 ~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~l~~~~~~-~~~~~~~~~~~~~~~ 84 (662)
T 3azo_A 19 VASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADG------------AEESALPAPWN-VRNRVFEYSGFPWAG 84 (662)
T ss_dssp HHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTS------------CEEESSCTTCC-BCCCGGGTCCCCEEE
T ss_pred HhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCC------------CcceeCCCCcc-ccccccccCCcccee
Confidence 346888999999997 66666666 558899999974331 12233344322 23 4556
Q ss_pred c--CCCCc-EEEecC-CCcEEEEecC--C-CccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC-
Q 011709 205 C--PTEPY-VLSGGK-DKSVVLWSIQ--D-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG- 276 (479)
Q Consensus 205 s--~~~~~-l~s~s~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 276 (479)
+ |||++ |+.++. +..|.++++. + +.. ..+..
T Consensus 85 ~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-----------------------------------------~~l~~~ 123 (662)
T 3azo_A 85 VPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-----------------------------------------RPLTPV 123 (662)
T ss_dssp ECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-----------------------------------------EECSCC
T ss_pred eeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-----------------------------------------EeccCC
Confidence 5 99998 776553 5566666654 1 111 22222
Q ss_pred ----CCCceEEEEEeeCCCcEEEEEecC----------CeEEEEeCCC------CCCCceeeec-cCCCCeEEEEecCCC
Q 011709 277 ----HEDTVEDVTFCPSSAQEFCSVGDD----------SCLILWDARV------GTSPVIKVEK-AHDADLHCVDWNPLD 335 (479)
Q Consensus 277 ----h~~~v~~l~~~~~~~~~l~s~~~d----------g~i~iwd~~~------~~~~~~~~~~-~~~~~v~~l~~sp~~ 335 (479)
|...+.+++|+|+| +.|++++.| ..|.+||+.+ +. ...+. .+...+..++|+| +
T Consensus 124 ~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~Sp-D 198 (662)
T 3azo_A 124 SAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA---VRELSDDAHRFVTGPRLSP-D 198 (662)
T ss_dssp CCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG---SEESSCSCSSEECCCEECT-T
T ss_pred ccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc---eeEEEecCCCcccCceECC-C
Confidence 56678899999999 567777766 5899999987 44 33444 5567788899999 9
Q ss_pred CcEEEEEeCC--------CcEEEEecC-CCCCCCCC---CceeeecCCCCcEEEEEEecCCCcEEEEEeCCC--CEEEEe
Q 011709 336 DNLILTGSAD--------NSVRMFDRR-NLTSNGVG---SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWD 401 (479)
Q Consensus 336 ~~~l~tgs~d--------g~I~iwd~~-~~~~~~~~---~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg--~v~iwd 401 (479)
+++|+.++.+ ..|++||+. . + .......+|...+..++|+|+|+ ++++++.|+ .|.+||
T Consensus 199 G~~la~~~~~~~~~~~~~~~i~~~d~~~~------g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~ 271 (662)
T 3azo_A 199 GRQAVWLAWDHPRMPWEGTELKTARVTED------GRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVD 271 (662)
T ss_dssp SSEEEEEEECTTCCTTTCEEEEEEEECTT------SCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEEC
T ss_pred CCEEEEEECCCCCCCCCCcEEEEEEECCC------CcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEE
Confidence 9999887755 379999998 4 3 23333345578899999999999 777888888 556666
Q ss_pred CCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecC
Q 011709 402 YEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNN 448 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~ 448 (479)
+..+ ........... .....+ .-.+.+++|+|++..++++.
T Consensus 272 ~~~~-~~~~l~~~~~~-~~~p~w----~~~~~~~~~~~~~~~~~~~~ 312 (662)
T 3azo_A 272 PATG-AATQLCRREEE-FAGPLW----TPGMRWFAPLANGLIAVVHG 312 (662)
T ss_dssp TTTC-CEEESSCCSSB-SSCCCC----STTCCSEEECTTSCEEEEEB
T ss_pred CCCC-ceeeccccccc-ccCccc----cccCceEeEeCCCEEEEEEE
Confidence 5442 21111000000 000000 00135688888888776654
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=1.4e-14 Score=136.06 Aligned_cols=244 Identities=8% Similarity=0.042 Sum_probs=164.5
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
..|.++.|++ +...++..+.++.++.|. . .....+..+.. .+.+++|+++|++++++..++.|
T Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~-~~~~~~~~~~g~l~~~~~~~~~i 68 (333)
T 2dg1_A 6 QDLPTLFYSG-KSNSAVPIISESELQTIT---A------------EPWLEISKKGL-QLEGLNFDRQGQLFLLDVFEGNI 68 (333)
T ss_dssp CCCCBCCSCG-GGGCSSCCCCGGGSCEEE---C------------EEEEEEESSCC-CEEEEEECTTSCEEEEETTTCEE
T ss_pred cccceeeecC-CccceeEEeecccCcccc---c------------ceeEEEeccCc-cccCcEECCCCCEEEEECCCCEE
Confidence 4578888988 556666667788899992 2 22344555554 36899999999977788889999
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecC
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (479)
.+||..++... .....+...+.++++++++ .++++...+
T Consensus 69 ~~~d~~~~~~~----------------------------------------~~~~~~~~~~~~i~~~~dg-~l~v~~~~~ 107 (333)
T 2dg1_A 69 FKINPETKEIK----------------------------------------RPFVSHKANPAAIKIHKDG-RLFVCYLGD 107 (333)
T ss_dssp EEECTTTCCEE----------------------------------------EEEECSSSSEEEEEECTTS-CEEEEECTT
T ss_pred EEEeCCCCcEE----------------------------------------EEeeCCCCCcceEEECCCC-cEEEEeCCC
Confidence 99998654321 1112345679999999998 667776666
Q ss_pred ----CeEEEEeCCCCCCCceeeec--cCCCCeEEEEecCCCCcEEEEEeC------CCcEEEEecCCCCCCCCCCceeee
Q 011709 301 ----SCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 301 ----g~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~l~tgs~------dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
+.|.+||..++. ....+. .+...++.++++| +++++++... .+.|..+|... ++ +..+
T Consensus 108 ~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~------~~-~~~~ 177 (333)
T 2dg1_A 108 FKSTGGIFAATENGDN--LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF------RT-VTPI 177 (333)
T ss_dssp SSSCCEEEEECTTSCS--CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS------CC-EEEE
T ss_pred CCCCceEEEEeCCCCE--EEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCC------CE-EEEe
Confidence 689999998776 222221 3456789999999 8887776654 24566666543 22 3333
Q ss_pred cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecC
Q 011709 369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNN 448 (479)
Q Consensus 369 ~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~ 448 (479)
..+...+..++|+|+++.++++.+.++.|.+||+...+...... .........++..+..+++++++..++++.
T Consensus 178 ~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~------~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~ 251 (333)
T 2dg1_A 178 IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF------GATIPYYFTGHEGPDSCCIDSDDNLYVAMY 251 (333)
T ss_dssp EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE------EEEEEEECCSSSEEEEEEEBTTCCEEEEEE
T ss_pred ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccc------cceEEEecCCCCCCCceEECCCCCEEEEEc
Confidence 33345688999999998777677778899999986422211100 001122233444578899999998777765
Q ss_pred CCccccceeEEEEee
Q 011709 449 HGLSYANKKIKIYCH 463 (479)
Q Consensus 449 ~~~~~~d~~i~i~~~ 463 (479)
. ++.|.+|+.
T Consensus 252 ~-----~~~v~~~d~ 261 (333)
T 2dg1_A 252 G-----QGRVLVFNK 261 (333)
T ss_dssp T-----TTEEEEECT
T ss_pred C-----CCEEEEECC
Confidence 5 667888865
No 172
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=1.7e-13 Score=124.35 Aligned_cols=239 Identities=9% Similarity=0.025 Sum_probs=161.2
Q ss_pred ceeEEEecCCCCcEEE-EEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 142 EVNRIRELPQNTKIVA-THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 142 ~V~~l~~~p~~~~~la-t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
...++++.+ ++++++ +.+.++.|.+||..+.... .....+.. .+.+++++++|+.+++.. ++.|
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~-~p~~i~~~~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTT------------VLPFNGLY-QPQGLAVDGAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----E------------ECCCCSCC-SCCCEEECTTCCEEEEET-TTEE
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccc------------eEeeCCcC-CcceeEECCCCCEEEEcC-CCEE
Confidence 678899998 667777 5577889999997654211 00011222 367999999998666665 8899
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec-CCCCceEEEEEeeCCCcEEEEEec
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
.+||....... .+. .....+.++++.+++ .++++...
T Consensus 90 ~~~d~~~~~~~-----------------------------------------~~~~~~~~~p~~i~~~~~g-~l~v~~~~ 127 (270)
T 1rwi_B 90 VTLAAGSNNQT-----------------------------------------VLPFDGLNYPEGLAVDTQG-AVYVADRG 127 (270)
T ss_dssp EEECTTCSCCE-----------------------------------------ECCCCSCSSEEEEEECTTC-CEEEEEGG
T ss_pred EEEeCCCceEe-----------------------------------------eeecCCcCCCcceEECCCC-CEEEEECC
Confidence 99997643211 010 122457899999988 67777778
Q ss_pred CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEE
Q 011709 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~ 379 (479)
++.|.+||..+.. ...........+.+++++| +++++++...++.|.+||... .........+...+.+++
T Consensus 128 ~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~------~~~~~~~~~~~~~p~~i~ 198 (270)
T 1rwi_B 128 NNRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAES------NNQVVLPFTDITAPWGIA 198 (270)
T ss_dssp GTEEEEECTTCCS--CEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTT------CCEEECCCSSCCSEEEEE
T ss_pred CCEEEEEECCCce--eEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCC------CceEeecccCCCCceEEE
Confidence 8999999876544 2222223334678899999 888888777789999999876 233222233336789999
Q ss_pred EecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEE
Q 011709 380 WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIK 459 (479)
Q Consensus 380 ~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~ 459 (479)
+++++. ++++...++.|.+||...... . .....+...+.++++++++..+++... ++.|+
T Consensus 199 ~d~~g~-l~v~~~~~~~v~~~~~~~~~~-~-------------~~~~~~~~~p~~i~~~~~g~l~v~~~~-----~~~v~ 258 (270)
T 1rwi_B 199 VDEAGT-VYVTEHNTNQVVKLLAGSTTS-T-------------VLPFTGLNTPLAVAVDSDRTVYVADRG-----NDRVV 258 (270)
T ss_dssp ECTTCC-EEEEETTTSCEEEECTTCSCC-E-------------ECCCCSCSCEEEEEECTTCCEEEEEGG-----GTEEE
T ss_pred ECCCCC-EEEEECCCCcEEEEcCCCCcc-e-------------eeccCCCCCceeEEECCCCCEEEEECC-----CCEEE
Confidence 999985 777777788999999865211 0 111122244789999999987777666 89999
Q ss_pred EEeeccc
Q 011709 460 IYCHLEA 466 (479)
Q Consensus 460 i~~~~~~ 466 (479)
+|+..+.
T Consensus 259 ~~~~~~~ 265 (270)
T 1rwi_B 259 KLTSLEH 265 (270)
T ss_dssp EECCCGG
T ss_pred EEcCCCc
Confidence 9976544
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.62 E-value=3.8e-14 Score=147.96 Aligned_cols=207 Identities=13% Similarity=0.092 Sum_probs=133.9
Q ss_pred eeEEEecCCCCcEEEEEeCC---------CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 143 VNRIRELPQNTKIVATHTDS---------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
...+.|+| +++.||.++.+ +.+.+||+.++... .+..|.. .+...+|||||+.||.
T Consensus 64 ~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-------------~l~~~~~-~~~~~~~SPdG~~la~ 128 (740)
T 4a5s_A 64 INDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-------------TEERIPN-NTQWVTWSPVGHKLAY 128 (740)
T ss_dssp CCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-------------CSSCCCT-TEEEEEECSSTTCEEE
T ss_pred ccceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-------------EcccCCC-cceeeEECCCCCEEEE
Confidence 34578899 88888888876 56779999987321 2334554 4789999999999998
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCC---------ceEEE
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED---------TVEDV 284 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l 284 (479)
+. |+.|.+||+.++........ ......+.++.. ....+
T Consensus 129 ~~-~~~i~~~~~~~~~~~~lt~~-------------------------------g~~~~~~~g~~~~v~~ee~~~~~~~~ 176 (740)
T 4a5s_A 129 VW-NNDIYVKIEPNLPSYRITWT-------------------------------GKEDIIYNGITDWVYEEEVFSAYSAL 176 (740)
T ss_dssp EE-TTEEEEESSTTSCCEECCSC-------------------------------CBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred EE-CCeEEEEECCCCceEEEcCC-------------------------------CCccceecCcccccccchhcCCCcce
Confidence 85 78999999976543211100 000012233332 22458
Q ss_pred EEeeCCCcEEEEEecC-C-----------------------------------eEEEEeCCC---CCCCceeeec-----
Q 011709 285 TFCPSSAQEFCSVGDD-S-----------------------------------CLILWDARV---GTSPVIKVEK----- 320 (479)
Q Consensus 285 ~~~~~~~~~l~s~~~d-g-----------------------------------~i~iwd~~~---~~~~~~~~~~----- 320 (479)
.|+|+| ..|+.++.| + .|.+||+.+ +.......+.
T Consensus 177 ~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~ 255 (740)
T 4a5s_A 177 WWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (740)
T ss_dssp EECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred EECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence 899999 456655322 1 588899988 6311122222
Q ss_pred -cCCCCeEEEEecCCCCcEEEEEeC----CCcEEEEecCCCCCCCCCC----c--eeee--cCCCCcEE-----EEEEec
Q 011709 321 -AHDADLHCVDWNPLDDNLILTGSA----DNSVRMFDRRNLTSNGVGS----P--INKF--EGHSAAVL-----CVQWSP 382 (479)
Q Consensus 321 -~~~~~v~~l~~sp~~~~~l~tgs~----dg~I~iwd~~~~~~~~~~~----~--~~~~--~~h~~~v~-----~l~~~p 382 (479)
+|...+..++|+| ++++++.... +..|++||+.+ ++ + +..+ ..|...|. .+.|+|
T Consensus 256 ~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~t------g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 256 LIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDE------SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp HTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEET------TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred CCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCC------CccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 3778899999999 8886665533 34799999987 44 1 2222 45666554 789999
Q ss_pred CCCcEEEEEe-CCC--CEEEEeCCC
Q 011709 383 DKSSVFGSSA-EDG--LLNIWDYEK 404 (479)
Q Consensus 383 ~~~~llas~s-~Dg--~v~iwd~~~ 404 (479)
||+.++...+ .+| .|.+||+..
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTC
T ss_pred CCCEEEEEEEcCCCceEEEEEECCC
Confidence 9997542454 344 577788765
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=1.2e-12 Score=122.92 Aligned_cols=236 Identities=10% Similarity=0.066 Sum_probs=154.8
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s 215 (479)
...+...+.+++|+| ++++++++..++.|.+||..++ ........+.. .+.+++|+++|++++++.
T Consensus 40 ~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~------------~~~~~~~~~~~-~~~~i~~~~dg~l~v~~~ 105 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETK------------EIKRPFVSHKA-NPAAIKIHKDGRLFVCYL 105 (333)
T ss_dssp EESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTC------------CEEEEEECSSS-SEEEEEECTTSCEEEEEC
T ss_pred EeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCC------------cEEEEeeCCCC-CcceEEECCCCcEEEEeC
Confidence 345566788999998 7778888999999999998876 22222223443 489999999998777776
Q ss_pred CC----CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 216 KD----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 216 ~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
.+ +.|.+||..+....... ....+...+++++++|++
T Consensus 106 ~~~~~~~~i~~~d~~~~~~~~~~--------------------------------------~~~~~~~~~~~i~~d~~g- 146 (333)
T 2dg1_A 106 GDFKSTGGIFAATENGDNLQDII--------------------------------------EDLSTAYCIDDMVFDSKG- 146 (333)
T ss_dssp TTSSSCCEEEEECTTSCSCEEEE--------------------------------------CSSSSCCCEEEEEECTTS-
T ss_pred CCCCCCceEEEEeCCCCEEEEEE--------------------------------------ccCccCCcccceEECCCC-
Confidence 66 68999998754321000 000133568999999998
Q ss_pred cEEEEEec------CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEE-EEEeCCCcEEEEecCCCCCCCCCCc
Q 011709 292 QEFCSVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSP 364 (479)
Q Consensus 292 ~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~~ 364 (479)
.++++... .+.|..+|..+++ ... +..+...+..++|+| ++++| ++.+.++.|.+||++.. +..
T Consensus 147 ~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~-~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~-----g~~ 217 (333)
T 2dg1_A 147 GFYFTDFRGYSTNPLGGVYYVSPDFRT--VTP-IIQNISVANGIALST-DEKVLWVTETTANRLHRIALEDD-----GVT 217 (333)
T ss_dssp CEEEEECCCBTTBCCEEEEEECTTSCC--EEE-EEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTT-----SSS
T ss_pred CEEEEeccccccCCCceEEEEeCCCCE--EEE-eecCCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCC-----CcC
Confidence 56666553 3567777766554 222 223344578999999 88755 45556889999999641 122
Q ss_pred ee--------eecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeC----CCC-C
Q 011709 365 IN--------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA----GHS-P 431 (479)
Q Consensus 365 ~~--------~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~----gh~-~ 431 (479)
+. .+.++ ..+..+++++++. ++++...++.|.+||... .... .+... ||. .
T Consensus 218 ~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g--~~~~------------~~~~~~~~~g~~~~ 281 (333)
T 2dg1_A 218 IQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRG--YPIG------------QILIPGRDEGHMLR 281 (333)
T ss_dssp EEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTTS--CEEE------------EEECTTGGGTCSCB
T ss_pred cccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCCC--CEEE------------EEEcCCCccccccC
Confidence 21 12222 4678899999998 666777788999999842 1110 11111 222 3
Q ss_pred ceeEEEecCCCeeeecCC
Q 011709 432 SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 432 ~~~~~~sp~~~~l~~~~~ 449 (479)
+.+++|+|++..|+.++.
T Consensus 282 ~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 282 STHPQFIPGTNQLIICSN 299 (333)
T ss_dssp CCEEEECTTSCEEEEEEE
T ss_pred cceEEECCCCCEEEEEeC
Confidence 789999999876655444
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.60 E-value=4.7e-13 Score=122.73 Aligned_cols=198 Identities=14% Similarity=0.172 Sum_probs=141.9
Q ss_pred CCCceeEEEecCCCCcEEEEEeC-CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
|...+..+++.+.++.++++... ++.|++||. ++ .....+.......+.+++++++|+.+++...+
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g------------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 141 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG------------QFVRKFGATILQHPRGVTVDNKGRIIVVECKV 141 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS------------CEEEEECTTTCSCEEEEEECTTSCEEEEETTT
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CC------------cEEEEecCccCCCceEEEEeCCCCEEEEECCC
Confidence 44568899995447777777754 789999994 33 22223322222247899999999988887888
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee--cCCCCceEEEEEeeCCCcEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--NGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~ 295 (479)
+.|.+||...... ..+ .++...+.++++++++ .+++
T Consensus 142 ~~i~~~~~~g~~~-----------------------------------------~~~~~~~~~~~p~~i~~~~~g-~l~v 179 (286)
T 1q7f_A 142 MRVIIFDQNGNVL-----------------------------------------HKFGCSKHLEFPNGVVVNDKQ-EIFI 179 (286)
T ss_dssp TEEEEECTTSCEE-----------------------------------------EEEECTTTCSSEEEEEECSSS-EEEE
T ss_pred CEEEEEcCCCCEE-----------------------------------------EEeCCCCccCCcEEEEECCCC-CEEE
Confidence 9999999643211 111 1234568899999998 6788
Q ss_pred EEecCCeEEEEeCCCCCCCceeeecc--CCCCeEEEEecCCCCcEEEEEeCCC-cEEEEecCCCCCCCCCCceeeecCCC
Q 011709 296 SVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSADN-SVRMFDRRNLTSNGVGSPINKFEGHS 372 (479)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~l~tgs~dg-~I~iwd~~~~~~~~~~~~~~~~~~h~ 372 (479)
+...++.|++||... . .+..+.. +...+..++++| +++++++...++ .|.+||.. ++.+..+..+.
T Consensus 180 ~~~~~~~i~~~~~~g-~--~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~-------g~~~~~~~~~~ 248 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEG-Q--YLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-------GQLISALESKV 248 (286)
T ss_dssp EEGGGTEEEEEETTC-C--EEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-------SCEEEEEEESS
T ss_pred EECCCCEEEEEcCCC-C--EEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC-------CCEEEEEcccC
Confidence 888899999999753 3 3444432 236789999999 888888888886 99999964 46666665543
Q ss_pred C--cEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 373 A--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 373 ~--~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
. .+.+++++|++. ++++ +.|+.|++|++..
T Consensus 249 ~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 249 KHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSC
T ss_pred CCCcceeEEECCCCc-EEEE-CCCCeEEEEEccc
Confidence 3 478999999997 6666 5699999999865
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.58 E-value=2.4e-13 Score=129.07 Aligned_cols=256 Identities=12% Similarity=0.096 Sum_probs=147.2
Q ss_pred EEEecCCCCcEEEEEe----------CCCcEEEEECCCCCCccccCCCCCCCCcEEEecc-----CCCceeeeeecCCCC
Q 011709 145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-----QDNAEFALAMCPTEP 209 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~~v~~l~~s~~~~ 209 (479)
.++|+| ++++|++++ .+++|.+||..+. +....+... .+.....++++|+|+
T Consensus 54 ~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~------------~~~~~i~~~~~~~~~g~~p~~i~~spdg~ 120 (361)
T 2oiz_A 54 HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKL------------TFEKEISLPPKRVQGLNYDGLFRQTTDGK 120 (361)
T ss_dssp EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTC------------CEEEEEEECTTBCCBCCCGGGEEECTTSS
T ss_pred ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCC------------cEEEEEEcCccccccCCCcceEEECCCCC
Confidence 899999 777777765 2567999999876 333333322 112357899999999
Q ss_pred cEEEecC--CCcEEEEecCCCccccc-cCCccc----ccCCCCCceeecCCCCCCCCCCCCCCCC-CCCc------eeec
Q 011709 210 YVLSGGK--DKSVVLWSIQDHITSSA-TDPATA----KSAGSSGSIIKQSPKPGDGNDKAADGPS-VGPR------GIYN 275 (479)
Q Consensus 210 ~l~s~s~--dg~i~vwd~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~ 275 (479)
+|+++.. +++|.+||+.+...... ...... ..+......+... .++.+..++... .... ..+.
T Consensus 121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~---~dg~~~~v~~~~~g~~~~~~~~~~~~~ 197 (361)
T 2oiz_A 121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC---GDGGLLTINLGEDGKVASQSRSKQMFS 197 (361)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE---TTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred EEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC---CCCcEEEEEECCCCcEeeeccccceEc
Confidence 9988764 68999999987654322 111000 0011100001000 111111111110 1100 0111
Q ss_pred CCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeecc------C----CCCeEEEEecCCCCcEEEEEeC-
Q 011709 276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA------H----DADLHCVDWNPLDDNLILTGSA- 344 (479)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~----~~~v~~l~~sp~~~~~l~tgs~- 344 (479)
.+...+ .+.+++++ ..++..+.++.|.++|+............. + ......++|+| ++..++++..
T Consensus 198 ~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~ 274 (361)
T 2oiz_A 198 VKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHP 274 (361)
T ss_dssp TTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEES
T ss_pred CCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEcc
Confidence 111221 23345666 345566788999999997654222221110 0 11112378999 7666665543
Q ss_pred ----------CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCC
Q 011709 345 ----------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 414 (479)
Q Consensus 345 ----------dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~ 414 (479)
.+.|.+||+.+ ++.+.++..+. +.+++|+|++++++ +++. +.|.|||+.++.
T Consensus 275 ~~~~~~~~~~~~~v~viD~~t------~~~v~~i~~~~--p~~ia~spdg~~l~-v~n~-~~v~v~D~~t~~-------- 336 (361)
T 2oiz_A 275 DGKEGTHKFPAAEIWVMDTKT------KQRVARIPGRD--ALSMTIDQQRNLML-TLDG-GNVNVYDISQPE-------- 336 (361)
T ss_dssp SCCTTCTTCCCSEEEEEETTT------TEEEEEEECTT--CCEEEEETTTTEEE-EECS-SCEEEEECSSSS--------
T ss_pred CCCcccccCCCceEEEEECCC------CcEEEEEecCC--eeEEEECCCCCEEE-EeCC-CeEEEEECCCCc--------
Confidence 34899999998 78888888776 89999999999655 5555 999999998731
Q ss_pred CCCCCCeeEEEeCCC-CCceeEEEecCCC
Q 011709 415 TTNYPAGLFFQHAGH-SPSSSIKFVLRES 442 (479)
Q Consensus 415 ~~~~~~~l~~~~~gh-~~~~~~~~sp~~~ 442 (479)
.+++-...++ .....++++|+|+
T Consensus 337 -----l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 337 -----PKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -----CEEEEEETTSCSSEEEEEECCCSC
T ss_pred -----ceeeEEeccCCCCcEEEEecCCCC
Confidence 1222222222 2257788888875
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=9e-13 Score=136.91 Aligned_cols=248 Identities=6% Similarity=-0.129 Sum_probs=155.0
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCC-----cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSP-----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
|...+..++|+| ++++||.++.++ +|++||+.++. .......+.. +.+++|+|||+.|+.
T Consensus 123 ~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~------------~~~~~~~~~~--~~~~~wspDg~~l~~ 187 (710)
T 2xdw_A 123 GTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAK------------ELPDVLERVK--FSCMAWTHDGKGMFY 187 (710)
T ss_dssp SCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTE------------EEEEEEEEEC--SCCEEECTTSSEEEE
T ss_pred CCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCC------------CCcccccCcc--cceEEEEeCCCEEEE
Confidence 444688999999 777887765543 89999999872 2222222222 568999999999998
Q ss_pred ecCCCc----------------EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec--
Q 011709 214 GGKDKS----------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-- 275 (479)
Q Consensus 214 ~s~dg~----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 275 (479)
++.++. |++|++.++.... ...+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~--------------------------------------~~v~~~~ 229 (710)
T 2xdw_A 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED--------------------------------------ILCAEFP 229 (710)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC--------------------------------------EEEECCT
T ss_pred EEECCccccccccccccCCCCEEEEEECCCCcccc--------------------------------------eEEeccC
Confidence 887766 8899886543210 01112
Q ss_pred CCCCceEEEEEeeCCCcEEEEEec-----CCeEEEEeCCC------CCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC
Q 011709 276 GHEDTVEDVTFCPSSAQEFCSVGD-----DSCLILWDARV------GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA 344 (479)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~ 344 (479)
.|...+..+.|+|+|. +|+.++. +..|.+||+.+ +.. ....+..+...+.. .|+| ++..|+..+.
T Consensus 230 ~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~ 305 (710)
T 2xdw_A 230 DEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTN-EGTVFTFKTN 305 (710)
T ss_dssp TCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEE-ETTEEEEEEC
T ss_pred CCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEec-cCCEEEEEEC
Confidence 2455678999999995 4554443 56899999986 421 13344455555554 4788 6776665554
Q ss_pred C----CcEEEEecCCCCCCCCCCceeeecCCCC--cEEEEEEecCCCcEEEEEeCCCC--EEEEeCCCCCccccCCCCCC
Q 011709 345 D----NSVRMFDRRNLTSNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTT 416 (479)
Q Consensus 345 d----g~I~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~llas~s~Dg~--v~iwd~~~~~~~~~~~~~~~ 416 (479)
+ +.|.+||+.... ......+..|.. .+..++|++++. ++++...|+. |.+||+..+ .
T Consensus 306 ~~~~~~~l~~~d~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g-~--------- 370 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPE----ESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHDLATG-A--------- 370 (710)
T ss_dssp TTCTTCEEEEEETTSCC----GGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTTC-C---------
T ss_pred CCCCCCEEEEEeCCCCC----cccceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEECCCC-C---------
Confidence 3 369999987621 012344545544 688899986554 7788888885 555666442 1
Q ss_pred CCCCeeEEEeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 417 NYPAGLFFQHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 417 ~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.......+.. +..++++|++..++.+... ....+.|..|+..
T Consensus 371 -----~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss-~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 371 -----LLKIFPLEVGSVVGYSGQKKDTEIFYQFTS-FLSPGIIYHCDLT 413 (710)
T ss_dssp -----EEEEECCCSSEEEEEECCTTCSEEEEEEEC-SSCCCEEEEEETT
T ss_pred -----EEEecCCCCceEEEEecCCCCCEEEEEEeC-CCCCCEEEEEECC
Confidence 1112223333 6778899988765532110 0114677777643
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.55 E-value=4e-13 Score=126.81 Aligned_cols=213 Identities=12% Similarity=0.071 Sum_probs=135.7
Q ss_pred CceeEEEecCCCCcEEEEEeCC---C--cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec
Q 011709 141 GEVNRIRELPQNTKIVATHTDS---P--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG 215 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s 215 (479)
..+..++|+| +++.||..+.+ + .|.+||+.++ .... +..+.. +..++|+|+|+.|+.++
T Consensus 59 ~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g------------~~~~-l~~~~~--~~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 59 ENATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETL------------SSKK-ILEAKN--IRSLEWNEDSRKLLIVG 122 (347)
T ss_dssp ESCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTT------------EEEE-EEEESE--EEEEEECTTSSEEEEEE
T ss_pred ccCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCC------------ceEE-EEcCCC--ccceeECCCCCEEEEEE
Confidence 4688999999 77777776653 3 4778888765 2222 222222 78999999999888876
Q ss_pred CC---------------------------CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCC
Q 011709 216 KD---------------------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 268 (479)
Q Consensus 216 ~d---------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (479)
.+ ..|.+||+.++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-------------------------------------- 164 (347)
T 2gop_A 123 FKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-------------------------------------- 164 (347)
T ss_dssp ECCCC---------CCCC---------CEEEEEEEETTTTEE--------------------------------------
T ss_pred ccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE--------------------------------------
Confidence 43 4566666654221
Q ss_pred CCceeecCCCCceEEEEEeeCCCcEEEEEecCC-------eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEE
Q 011709 269 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-------CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT 341 (479)
Q Consensus 269 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~t 341 (479)
+..+.. . .+..+.|+|++ +++++..++ ...+|.+.++. ...+..+ ..+..+ +| ++++|+.
T Consensus 165 --~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~---~~~l~~~-~~~~~~--sp-dg~~l~~ 231 (347)
T 2gop_A 165 --IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK---EEKMFEK-VSFYAV--DS-DGERILL 231 (347)
T ss_dssp --EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE---EEEEEEE-ESEEEE--EE-CSSCEEE
T ss_pred --EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCc---eEEeccC-cceeeE--CC-CCCEEEE
Confidence 122222 2 67889999998 566665442 33444443433 2333334 555554 89 8888877
Q ss_pred EeCC--------CcEEEEecCCCCCCCCCCceeeecCCCCcEEE-EEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCC
Q 011709 342 GSAD--------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 412 (479)
Q Consensus 342 gs~d--------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~ 412 (479)
++.+ ..|.+|| . ++.......|...+.. +.|+ ++ ++++++.++.++|| +.. +..
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~------~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~-g~~---- 294 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--G------KEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWD-GEI---- 294 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--S------SCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EES-SSE----
T ss_pred EEccccCCccccceEEEEC--C------CceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcC-Cce----
Confidence 7754 3688888 3 4555555566778886 9999 76 67889999999999 873 211
Q ss_pred CCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 413 PRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 413 ~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
.....+...+.+++|+| ..+++++.
T Consensus 295 ----------~~~~~~~~~v~~~~~s~--~~~~~~~~ 319 (347)
T 2gop_A 295 ----------KPIAKGRHWIMGFDVDE--IVVYLKET 319 (347)
T ss_dssp ----------EEEECSSSEEEEEEESS--SEEEEEEC
T ss_pred ----------EEEecCCCeEEeeeeeC--cEEEEEcC
Confidence 11123334478999999 55555554
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=5.1e-13 Score=138.40 Aligned_cols=248 Identities=10% Similarity=-0.076 Sum_probs=153.0
Q ss_pred cCCCceeEEEecCCCCcEEE-----EEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE
Q 011709 138 IHPGEVNRIRELPQNTKIVA-----THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL 212 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~la-----t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~ 212 (479)
+|...+..++|+| ++++|| .|+.+.+|++||+.++.... . ..+.. . ....++|+|||+.|+
T Consensus 118 ~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---------~-~~~~~-~--~~~~~~wspDg~~l~ 183 (695)
T 2bkl_A 118 DGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---------V-DVIEG-G--KYATPKWTPDSKGFY 183 (695)
T ss_dssp SSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCS---------S-CCBSC-C--TTCCCEECTTSSEEE
T ss_pred CCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcC---------C-cccCc-c--cccceEEecCCCEEE
Confidence 3555789999999 777887 34445689999999883210 0 01111 1 125899999999999
Q ss_pred EecCCCc-------------EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 011709 213 SGGKDKS-------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 279 (479)
Q Consensus 213 s~s~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (479)
.++.|.. |++|++.++.... ..+.....|..
T Consensus 184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------------------------------~lv~~~~~~~~ 227 (695)
T 2bkl_A 184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD------------------------------------TVVHERTGDPT 227 (695)
T ss_dssp EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC------------------------------------EEEECCCCCTT
T ss_pred EEEecCCCCCccccCCCCCEEEEEECCCCchhc------------------------------------eEEEecCCCCE
Confidence 9888776 9999987543210 00112223556
Q ss_pred ceEEEEEeeCCCcEEEEEecCC----eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEe---CCCcEEEEe
Q 011709 280 TVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFD 352 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs---~dg~I~iwd 352 (479)
.+.++.|+|+|. +++.++.++ .|.+||..++. ...+..+...+....+ + ++.+++.+. .++.|.+||
T Consensus 228 ~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 228 TFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGEKD---FRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp CEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTCSS---CEEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEB
T ss_pred EEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCCCc---eEEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEe
Confidence 788999999995 455555444 67777665544 3334455556666666 4 455555544 257899999
Q ss_pred cCCCCCCCCCCc--eeeecCC--CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC
Q 011709 353 RRNLTSNGVGSP--INKFEGH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (479)
Q Consensus 353 ~~~~~~~~~~~~--~~~~~~h--~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g 428 (479)
+.. +.. ...+..| ...+..++|+ + ..++++...|+..+||.+...+... .....
T Consensus 302 ~~~------~~~~~~~~l~~~~~~~~l~~~~~~-~-~~lv~~~~~dg~~~l~~~~~~g~~~--------------~~l~~ 359 (695)
T 2bkl_A 302 PAK------PARASWKEIVPEDSSASLLSVSIV-G-GHLSLEYLKDATSEVRVATLKGKPV--------------RTVQL 359 (695)
T ss_dssp TTB------CSGGGCEEEECCCSSCEEEEEEEE-T-TEEEEEEEETTEEEEEEEETTCCEE--------------EECCC
T ss_pred CCC------CCccCCeEEecCCCCCeEEEEEEE-C-CEEEEEEEECCEEEEEEEeCCCCee--------------EEecC
Confidence 976 332 2333333 4568888888 3 4478899999999988765322211 11122
Q ss_pred C--CCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 429 H--SPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 429 h--~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
+ ..+..++++|++..++..... ....+.|.+|+..
T Consensus 360 ~~~~~v~~~~~s~d~~~l~~~~ss-~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 360 PGVGAASNLMGLEDLDDAYYVFTS-FTTPRQIYKTSVS 396 (695)
T ss_dssp SSSSEECCCBSCTTCSEEEEEEEE-TTEEEEEEEEETT
T ss_pred CCCeEEEEeecCCCCCEEEEEEcC-CCCCCEEEEEECC
Confidence 2 236678888988776632210 0115778888643
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.53 E-value=7.2e-12 Score=130.11 Aligned_cols=211 Identities=12% Similarity=0.006 Sum_probs=141.7
Q ss_pred eeEEEecCCCCcEEEEEeCCCc----------------EEEEECCCCCCccccCCCCCCCCcEEEec--cCCCceeeeee
Q 011709 143 VNRIRELPQNTKIVATHTDSPD----------------VLIWDVEAQPNRHAVLGATNSRPDLILTG--HQDNAEFALAM 204 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--h~~~~v~~l~~ 204 (479)
+..++|+| +++.|+.++.++. |++|++.++.. .....+.. |.. .+..+.|
T Consensus 173 ~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~----------~~~~v~~~~~~~~-~~~~~~~ 240 (710)
T 2xdw_A 173 FSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS----------EDILCAEFPDEPK-WMGGAEL 240 (710)
T ss_dssp SCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG----------GCEEEECCTTCTT-CEEEEEE
T ss_pred cceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc----------cceEEeccCCCCe-EEEEEEE
Confidence 67899999 7788888887766 99999987621 11223333 232 3678999
Q ss_pred cCCCCcEEEecC-----CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 011709 205 CPTEPYVLSGGK-----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED 279 (479)
Q Consensus 205 s~~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (479)
+|+|++|+.++. +..|.+||+.+..... ........+..+..
T Consensus 241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~---------------------------------~~~~~~~~l~~~~~ 287 (710)
T 2xdw_A 241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI---------------------------------TGILKWVKLIDNFE 287 (710)
T ss_dssp CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS---------------------------------CSSCCCEEEECSSS
T ss_pred cCCCCEEEEEEEccCCCccEEEEEECccccccc---------------------------------CCccceEEeeCCCC
Confidence 999998887764 5689999986410000 00001133444555
Q ss_pred ceEEEEEeeCCCcEEEEEecC---CeEEEEeCCCCCCCceeeeccCCC--CeEEEEecCCCCcEEEEEeCCCc--EEEEe
Q 011709 280 TVEDVTFCPSSAQEFCSVGDD---SCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNS--VRMFD 352 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~l~tgs~dg~--I~iwd 352 (479)
.+.. .|+++|..+++.+..+ +.|.+||+.++.......+..|.. .+..++|++ ++.++++...|+. |.+||
T Consensus 288 ~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~ 365 (710)
T 2xdw_A 288 GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHD 365 (710)
T ss_dssp SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEE
T ss_pred cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEE
Confidence 5544 4888886555555433 379999998765211233334443 688899997 7889999998985 55667
Q ss_pred cCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeC---CCCEEEEeCCCCC
Q 011709 353 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKVG 406 (479)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~---Dg~v~iwd~~~~~ 406 (479)
+.. ++.+..+..+.+.|..+.++|++..++++.+. .++|.+||+.++.
T Consensus 366 ~~~------g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 366 LAT------GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTT------CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCC------CCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 655 56677788888889999999998766655543 4789999998743
No 181
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.53 E-value=6e-13 Score=127.63 Aligned_cols=210 Identities=14% Similarity=0.037 Sum_probs=134.7
Q ss_pred CcEEEeccCCCceee-----eeecCCCCcEEEecC-CCc--EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCC
Q 011709 187 PDLILTGHQDNAEFA-----LAMCPTEPYVLSGGK-DKS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDG 258 (479)
Q Consensus 187 ~~~~~~~h~~~~v~~-----l~~s~~~~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (479)
....+..|... ... .+|+|||++|+.++. +|. |.+||+.++...
T Consensus 22 ~~~~lt~~~~~-~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~--------------------------- 73 (388)
T 3pe7_A 22 QVTRLTPPDVT-CHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT--------------------------- 73 (388)
T ss_dssp EEEECSCTTSC-EECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE---------------------------
T ss_pred ceEEecCCccc-ccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE---------------------------
Confidence 34445555532 334 889999999988887 674 778888654321
Q ss_pred CCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEE--ecCCCC
Q 011709 259 NDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD--WNPLDD 336 (479)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~--~sp~~~ 336 (479)
....++...+..+.|+|++ ..|+.++.++.|++||+.+++ .......+...+.... ++| ++
T Consensus 74 -------------~lt~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~-dg 136 (388)
T 3pe7_A 74 -------------QLTEGRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATLE--ENVVYQVPAEWVGYGTWVANS-DC 136 (388)
T ss_dssp -------------ECCCSSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTCC--EEEEEECCTTEEEEEEEEECT-TS
T ss_pred -------------EeeeCCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCCc--ceeeeechhhcccccceeECC-CC
Confidence 2223344444567899999 678888888999999999987 3334444555454443 488 88
Q ss_pred cEEEEE----------------------eCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEec-CCCcEEEEEeC
Q 011709 337 NLILTG----------------------SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAE 393 (479)
Q Consensus 337 ~~l~tg----------------------s~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~llas~s~ 393 (479)
.+++.. +.++.|.+||+.+ ++ ...+..+...+..++|+| +++.+ +.++.
T Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~------g~-~~~l~~~~~~~~~~~~sp~dg~~l-~~~~~ 208 (388)
T 3pe7_A 137 TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT------GE-STVILQENQWLGHPIYRPYDDSTV-AFCHE 208 (388)
T ss_dssp SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT------CC-EEEEEEESSCEEEEEEETTEEEEE-EEEEC
T ss_pred CeeccccccCcccccccccchhhhhhccCCcceEEEEECCC------Cc-eEEeecCCccccccEECCCCCCEE-EEEEe
Confidence 888743 2447899999987 43 444555677899999999 99864 44443
Q ss_pred C------CCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC--CCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 394 D------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--SPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 394 D------g~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh--~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
+ ..|.++|+... .. ..+ ..++ ..+..++|+|||+.|+..+..-...+..|.+|+..
T Consensus 209 ~~~~~~~~~l~~~d~~~~-~~------------~~l--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 209 GPHDLVDARMWLINEDGT-NM------------RKV--KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE 272 (388)
T ss_dssp SCTTTSSCSEEEEETTSC-CC------------EES--CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT
T ss_pred cCCCCCcceEEEEeCCCC-ce------------EEe--eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecC
Confidence 2 37778887652 11 111 1111 13567899999998866543211112348888754
No 182
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.51 E-value=9.5e-12 Score=116.51 Aligned_cols=211 Identities=14% Similarity=0.135 Sum_probs=147.6
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEE---------eccCCCceeeeeecC-CC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL---------TGHQDNAEFALAMCP-TE 208 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------~~h~~~~v~~l~~s~-~~ 208 (479)
+-..+..|++.| +++++++.+.++.|++||..... ..+..+ .++.. ...+++++| ++
T Consensus 89 ~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~-----------~~~~~~~~~~~~g~~~~~~~-~P~~ia~~~~~g 155 (329)
T 3fvz_A 89 LFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKE-----------GPLLILGRSMQPGSDQNHFC-QPTDVAVEPSTG 155 (329)
T ss_dssp TCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSS-----------CCSEEESBTTBCCCSTTCCS-SEEEEEECTTTC
T ss_pred ccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCe-----------EEEEEecccCCCCCCccccC-CCcEEEEeCCCC
Confidence 335688999998 77799999999999999986541 122222 12232 368999999 77
Q ss_pred CcEEEec-CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 209 PYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 209 ~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
..+++.+ .++.|++||...... ...... +.+ . ....++......++++
T Consensus 156 ~lyv~d~~~~~~I~~~~~~g~~~-~~~~~~------------------g~~-------~-----~~~~~~~~~p~gia~d 204 (329)
T 3fvz_A 156 AVFVSDGYCNSRIVQFSPSGKFV-TQWGEE------------------SSG-------S-----SPRPGQFSVPHSLALV 204 (329)
T ss_dssp CEEEEECSSCCEEEEECTTSCEE-EEECEE------------------CCS-------S-----SCCTTEESCEEEEEEE
T ss_pred eEEEEeCCCCCeEEEEcCCCCEE-EEeccC------------------CCC-------C-----CCCCcccCCCcEEEEE
Confidence 7777776 689999999543211 100000 000 0 0001223457899999
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCCceeee--ccCCCCeEEEEecCCCCcEEEEEe-------CCCcEEEEecCCCCC
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGS-------ADNSVRMFDRRNLTS 358 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~l~tgs-------~dg~I~iwd~~~~~~ 358 (479)
|++..++++...++.|++||..+++ .+..+ ..+...+.+++|+| +..+++.+ .+..|++||..+
T Consensus 205 ~~~g~l~v~d~~~~~I~~~~~~~G~--~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~--- 277 (329)
T 3fvz_A 205 PHLDQLCVADRENGRIQCFKTDTKE--FVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSS--- 277 (329)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCC--EEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTT---
T ss_pred CCCCEEEEEECCCCEEEEEECCCCc--EEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCC---
Confidence 9844888888899999999998777 45554 34567788999998 33444333 344899999987
Q ss_pred CCCCCceeee---cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 359 NGVGSPINKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 359 ~~~~~~~~~~---~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++.+..+ .++...+.+|+++|+|. ++++...++.|++|++..
T Consensus 278 ---g~~~~~~~~~~~~~~~p~~ia~~~dG~-lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 278 ---GEIIDVFKPVRKHFDMPHDIVASEDGT-VYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ---CCEEEEECCSSSCCSSEEEEEECTTSE-EEEEESSSCCEEEEEEEE
T ss_pred ---CeEEEEEcCCCCccCCeeEEEECCCCC-EEEEECCCCEEEEEeCCc
Confidence 6777776 36777899999999994 888999999999999864
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.51 E-value=5e-11 Score=109.58 Aligned_cols=239 Identities=8% Similarity=0.011 Sum_probs=161.9
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
.+...+.++.+.+ ++.++++...++.|.+||.. +... ...+..+. ..+.+++++++|..+++...+
T Consensus 12 ~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~-----------~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~ 77 (299)
T 2z2n_A 12 NQDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKIT-----------EYPLPTPD-AKVMCLTISSDGEVWFTENAA 77 (299)
T ss_dssp SSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEE-----------EEECSSTT-CCEEEEEECTTSCEEEEETTT
T ss_pred CcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeE-----------EecCCccc-CceeeEEECCCCCEEEeCCCC
Confidence 3446789999998 67777777668899999987 4111 00111122 347899999999888877778
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
+.|..||....... ..+......+.++++.+++ .++++.
T Consensus 78 ~~i~~~~~~g~~~~----------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~~ 116 (299)
T 2z2n_A 78 NKIGRITKKGIIKE----------------------------------------YTLPNPDSAPYGITEGPNG-DIWFTE 116 (299)
T ss_dssp TEEEEECTTSCEEE----------------------------------------EECSSTTCCEEEEEECTTS-CEEEEE
T ss_pred CeEEEECCCCcEEE----------------------------------------EeCCCcCCCceeeEECCCC-CEEEEe
Confidence 89999987521100 0111133468899999988 677777
Q ss_pred ecCCeEEEEeCCCCCCCcee-eeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceee-ecCCCCcE
Q 011709 298 GDDSCLILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAV 375 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~v 375 (479)
..++.|.+||. ++. ... ....+...+..+++++ +++++++...++.|..||. . +..... +..+...+
T Consensus 117 ~~~~~i~~~d~-~g~--~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~ 185 (299)
T 2z2n_A 117 MNGNRIGRITD-DGK--IREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-S------GDITEFKIPTPASGP 185 (299)
T ss_dssp TTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCE
T ss_pred cCCceEEEECC-CCC--EEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-C------CcEEEeeCCCCCCcc
Confidence 77889999998 554 222 2223456789999999 8888887777889999998 4 333322 33345578
Q ss_pred EEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeC-CCCCceeEEEecCCCeeeecCCCcccc
Q 011709 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHSPSSSIKFVLRESCLVDNNHGLSYA 454 (479)
Q Consensus 376 ~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~-gh~~~~~~~~sp~~~~l~~~~~~~~~~ 454 (479)
.++++++++. ++++...++.|.+||. .+ ... .+... +...+.++++++++...++...
T Consensus 186 ~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g-~~~-------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~----- 244 (299)
T 2z2n_A 186 VGITKGNDDA-LWFVEIIGNKIGRITT-SG-EIT-------------EFKIPTPNARPHAITAGAGIDLWFTEWG----- 244 (299)
T ss_dssp EEEEECTTSS-EEEEETTTTEEEEECT-TC-CEE-------------EEECSSTTCCEEEEEECSTTCEEEEETT-----
T ss_pred eeEEECCCCC-EEEEccCCceEEEECC-CC-cEE-------------EEECCCCCCCceeEEECCCCCEEEeccC-----
Confidence 8999999987 6767666889999998 42 111 11122 2344789999999887666544
Q ss_pred ceeEEEEee
Q 011709 455 NKKIKIYCH 463 (479)
Q Consensus 455 d~~i~i~~~ 463 (479)
++.|..|+.
T Consensus 245 ~~~i~~~d~ 253 (299)
T 2z2n_A 245 ANKIGRLTS 253 (299)
T ss_dssp TTEEEEEET
T ss_pred CceEEEECC
Confidence 567777765
No 184
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.49 E-value=6.8e-12 Score=119.02 Aligned_cols=230 Identities=7% Similarity=0.025 Sum_probs=141.1
Q ss_pred CCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec----------CCCcEEEEecCCCcc
Q 011709 161 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------KDKSVVLWSIQDHIT 230 (479)
Q Consensus 161 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s----------~dg~i~vwd~~~~~~ 230 (479)
.|+.|++||..++ +....+..+.. - .++|+|+|++|+++. .++.|.+||+.+...
T Consensus 29 ~d~~v~v~D~~t~------------~~~~~i~~g~~--p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~ 93 (361)
T 2oiz_A 29 TESRVHVYDYTNG------------KFLGMVPTAFN--G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF 93 (361)
T ss_dssp GGCEEEEEETTTC------------CEEEEEECCEE--E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE
T ss_pred ccCeEEEEECCCC------------eEEEEecCCCC--C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE
Confidence 3679999998877 34445555442 3 899999999998876 367899999875433
Q ss_pred ccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec--CCeEEEEeC
Q 011709 231 SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD--DSCLILWDA 308 (479)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg~i~iwd~ 308 (479)
....... . .. ..+......++++|+| ++++++.. ++.|.+||+
T Consensus 94 ~~~i~~~----------------------------~-----~~-~~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~ 138 (361)
T 2oiz_A 94 EKEISLP----------------------------P-----KR-VQGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDV 138 (361)
T ss_dssp EEEEEEC----------------------------T-----TB-CCBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEET
T ss_pred EEEEEcC----------------------------c-----cc-cccCCCcceEEECCCC-CEEEEECCCCCCeEEEEEC
Confidence 2111000 0 00 0022345678999999 45665543 689999999
Q ss_pred CCCCCCceee-eccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC-----------CCCc------------
Q 011709 309 RVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG-----------VGSP------------ 364 (479)
Q Consensus 309 ~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~-----------~~~~------------ 364 (479)
.+++ .+.. +. .. ....+.+.|.....+++.+.||.+.+|++....... ...+
T Consensus 139 ~~~~--~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (361)
T 2oiz_A 139 AKGD--YVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKA 214 (361)
T ss_dssp TTTE--EEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEE
T ss_pred CCCc--EEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEE
Confidence 9886 4554 32 22 223355666334667777777777777764310000 0000
Q ss_pred --------eeeecCCC-----------------------CcEEEEEEecCCCcEEEEEeC----------CCCEEEEeCC
Q 011709 365 --------INKFEGHS-----------------------AAVLCVQWSPDKSSVFGSSAE----------DGLLNIWDYE 403 (479)
Q Consensus 365 --------~~~~~~h~-----------------------~~v~~l~~~p~~~~llas~s~----------Dg~v~iwd~~ 403 (479)
+..+.... .....++|+|++.+++++.+. .+.|.+||+.
T Consensus 215 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~ 294 (361)
T 2oiz_A 215 HFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK 294 (361)
T ss_dssp EEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT
T ss_pred EEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC
Confidence 00010000 001127889998877766541 3479999988
Q ss_pred CCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 404 KVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
+. +.+-....+. +.+++|+||+++|++++. +.|.+|+....
T Consensus 295 t~---------------~~v~~i~~~~-p~~ia~spdg~~l~v~n~------~~v~v~D~~t~ 335 (361)
T 2oiz_A 295 TK---------------QRVARIPGRD-ALSMTIDQQRNLMLTLDG------GNVNVYDISQP 335 (361)
T ss_dssp TT---------------EEEEEEECTT-CCEEEEETTTTEEEEECS------SCEEEEECSSS
T ss_pred CC---------------cEEEEEecCC-eeEEEECCCCCEEEEeCC------CeEEEEECCCC
Confidence 74 3344444555 899999999998887653 79999986653
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.48 E-value=3.9e-12 Score=119.06 Aligned_cols=241 Identities=7% Similarity=-0.038 Sum_probs=154.5
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEE
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~ 221 (479)
....+.+. ++.++++...++.|.+||..++ +.+..+.... ....++++++++.+++...++.|.
T Consensus 45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~------------~~~~~i~~~~--~p~~i~~~~~g~lyv~~~~~~~v~ 108 (328)
T 3dsm_A 45 VAQSMVIR--DGIGWIVVNNSHVIFAIDINTF------------KEVGRITGFT--SPRYIHFLSDEKAYVTQIWDYRIF 108 (328)
T ss_dssp CEEEEEEE--TTEEEEEEGGGTEEEEEETTTC------------CEEEEEECCS--SEEEEEEEETTEEEEEEBSCSEEE
T ss_pred cceEEEEE--CCEEEEEEcCCCEEEEEECccc------------EEEEEcCCCC--CCcEEEEeCCCeEEEEECCCCeEE
Confidence 35666663 4567777777899999999987 4444454333 368999998885444544789999
Q ss_pred EEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe-cC
Q 011709 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DD 300 (479)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~d 300 (479)
+||..+......... ....+.......+++ ..+ .++++.. .+
T Consensus 109 ~iD~~t~~~~~~i~~-----------------------------------g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~ 151 (328)
T 3dsm_A 109 IINPKTYEITGYIEC-----------------------------------PDMDMESGSTEQMVQ-YGK-YVYVNCWSYQ 151 (328)
T ss_dssp EEETTTTEEEEEEEC-----------------------------------TTCCTTTCBCCCEEE-ETT-EEEEEECTTC
T ss_pred EEECCCCeEEEEEEc-----------------------------------CCccccCCCcceEEE-ECC-EEEEEcCCCC
Confidence 999976543211100 000011123445666 334 5555554 48
Q ss_pred CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC----------CcEEEEecCCCCCCCCCCceeeecC
Q 011709 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----------NSVRMFDRRNLTSNGVGSPINKFEG 370 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d----------g~I~iwd~~~~~~~~~~~~~~~~~~ 370 (479)
+.|.++|+.+++ ....+.. ......++++| ++++++++..+ +.|.++|..+ ++.+..+..
T Consensus 152 ~~v~viD~~t~~--~~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t------~~v~~~~~~ 221 (328)
T 3dsm_A 152 NRILKIDTETDK--VVDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAET------FTVEKQFKF 221 (328)
T ss_dssp CEEEEEETTTTE--EEEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTT------TEEEEEEEC
T ss_pred CEEEEEECCCCe--EEEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCC------CeEEEEEec
Confidence 899999999887 4554433 33457899999 88877776655 7899999987 555555543
Q ss_pred C-CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecC-
Q 011709 371 H-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNN- 448 (479)
Q Consensus 371 h-~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~- 448 (479)
. ......++|+|+++.++++.+ .|.+||+.+.. .... .+...+-.....++++|++..|+.+.
T Consensus 222 ~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~-~~~~-----------~~~~~~~~~p~gi~vdp~~g~lyva~~ 286 (328)
T 3dsm_A 222 KLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADR-VPVR-----------PFLEFRDTKYYGLTVNPNNGEVYVADA 286 (328)
T ss_dssp CTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSS-CCSS-----------CSBCCCSSCEEEEEECTTTCCEEEEEC
T ss_pred CCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCc-eeee-----------eeecCCCCceEEEEEcCCCCeEEEEcc
Confidence 2 236889999999997664433 89999998742 1110 00011123368899999655544443
Q ss_pred ---CCccccceeEEEEeec
Q 011709 449 ---HGLSYANKKIKIYCHL 464 (479)
Q Consensus 449 ---~~~~~~d~~i~i~~~~ 464 (479)
.. ++.|.+|+..
T Consensus 287 ~~y~~----~~~V~v~d~~ 301 (328)
T 3dsm_A 287 IDYQQ----QGIVYRYSPQ 301 (328)
T ss_dssp TTSSS----EEEEEEECTT
T ss_pred ccccc----CCEEEEECCC
Confidence 22 7899999765
No 186
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.47 E-value=3.5e-11 Score=111.64 Aligned_cols=245 Identities=6% Similarity=0.031 Sum_probs=153.0
Q ss_pred CceeEEEecCCCCcEEEE-------EeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC-CCcEE
Q 011709 141 GEVNRIRELPQNTKIVAT-------HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVL 212 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat-------~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~-~~~l~ 212 (479)
....+++|.+ ++.++++ ++.++.|.+||..++...... .....++.. .+.+++++++ |++++
T Consensus 18 ~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--------~~~~~~~~~-~~~~i~~~~~~g~l~v 87 (314)
T 1pjx_A 18 PGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC--------KPEVNGYGG-IPAGCQCDRDANQLFV 87 (314)
T ss_dssp TTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE--------CCEETTEEC-CEEEEEECSSSSEEEE
T ss_pred CCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE--------ecccCCCCC-CCceEEEecCCCcEEE
Confidence 4567899997 7778877 577889999998766211000 000012333 4789999999 66555
Q ss_pred EecCCCcEEEEecCCCccccc-cCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC
Q 011709 213 SGGKDKSVVLWSIQDHITSSA-TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291 (479)
Q Consensus 213 s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 291 (479)
+.. .+.|.+||.. +..... ... ........+.++++++++
T Consensus 88 ~~~-~~~l~~~d~~-g~~~~~~~~~------------------------------------~~~~~~~~~~~i~~d~~g- 128 (314)
T 1pjx_A 88 ADM-RLGLLVVQTD-GTFEEIAKKD------------------------------------SEGRRMQGCNDCAFDYEG- 128 (314)
T ss_dssp EET-TTEEEEEETT-SCEEECCSBC------------------------------------TTSCBCBCCCEEEECTTS-
T ss_pred EEC-CCCEEEEeCC-CCEEEEEecc------------------------------------CCCccccCCcCEEECCCC-
Confidence 444 4478899886 322110 000 000112357899999998
Q ss_pred cEEEEEecC---------------CeEEEEeCCCCCCCceeeeccCCCCeEEEEec----CCCCcEEE-EEeCCCcEEEE
Q 011709 292 QEFCSVGDD---------------SCLILWDARVGTSPVIKVEKAHDADLHCVDWN----PLDDNLIL-TGSADNSVRMF 351 (479)
Q Consensus 292 ~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s----p~~~~~l~-tgs~dg~I~iw 351 (479)
.++++...+ +.|..||.. ++ ... ...+......++|+ | +++.|+ +...++.|.+|
T Consensus 129 ~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~-~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~ 203 (314)
T 1pjx_A 129 NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQ-VDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSY 203 (314)
T ss_dssp CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEE-EEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEE
T ss_pred CEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEE-eccCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEE
Confidence 666666555 577778765 44 222 22344557889999 9 776554 44568899999
Q ss_pred ecCCCCCCCCCC-----ceeeecCCC-CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEE
Q 011709 352 DRRNLTSNGVGS-----PINKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (479)
Q Consensus 352 d~~~~~~~~~~~-----~~~~~~~h~-~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 425 (479)
|+... +. ....+..+. ..+..+++++++. ++++...++.|.+||..++. .. . .
T Consensus 204 ~~~~~-----g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~-~~-----------~---~ 262 (314)
T 1pjx_A 204 DIKGP-----AKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQ-PK-----------M---R 262 (314)
T ss_dssp EEEET-----TEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBS-CS-----------E---E
T ss_pred ECCCC-----CccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCc-Ee-----------E---E
Confidence 98621 22 233344444 6688999999997 67677678899999987421 11 1 1
Q ss_pred eCCC-CCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 426 HAGH-SPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 426 ~~gh-~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
...+ ..+.+++|+|++..|+.++.. ++.|..|+..
T Consensus 263 ~~~~~~~~~~i~~~~dg~~l~v~~~~----~~~l~~~~~~ 298 (314)
T 1pjx_A 263 IRCPFEKPSNLHFKPQTKTIFVTEHE----NNAVWKFEWQ 298 (314)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETT----TTEEEEEECS
T ss_pred EeCCCCCceeEEECCCCCEEEEEeCC----CCeEEEEeCC
Confidence 1122 447899999999855544442 6788888654
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.46 E-value=4.9e-12 Score=119.25 Aligned_cols=218 Identities=10% Similarity=0.114 Sum_probs=134.4
Q ss_pred CceeEEEecCCCCcEEEEEe---------CCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 141 GEVNRIRELPQNTKIVATHT---------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
..+...++ ++..||... .++.|.+||+.++. . ..+ . .+..++|+|+|++|
T Consensus 15 ~~~~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~------------~-~~l----~-~~~~~~~SpDg~~l 73 (347)
T 2gop_A 15 AYLSDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNNA------------R-RFI----E-NATMPRISPDGKKI 73 (347)
T ss_dssp CEEEEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC------------E-EEE----E-SCEEEEECTTSSEE
T ss_pred EEcccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCCc------------e-EEc----c-cCCCeEECCCCCEE
Confidence 34556666 455555432 25689999998762 1 122 2 36799999999999
Q ss_pred EEecCC---Cc--EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 212 LSGGKD---KS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 212 ~s~s~d---g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
+.++.+ +. |.+||+.++.. ..+..+.. +..++|
T Consensus 74 a~~~~~~~~~~~~l~~~~~~~g~~-----------------------------------------~~l~~~~~-~~~~~w 111 (347)
T 2gop_A 74 AFMRANEEKKVSEIWVADLETLSS-----------------------------------------KKILEAKN-IRSLEW 111 (347)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEE-----------------------------------------EEEEEESE-EEEEEE
T ss_pred EEEEeccCCCcceEEEEECCCCce-----------------------------------------EEEEcCCC-ccceeE
Confidence 887654 33 77777754322 11222233 899999
Q ss_pred eeCCCcEEEEEec---------------------------CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEE
Q 011709 287 CPSSAQEFCSVGD---------------------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI 339 (479)
Q Consensus 287 ~~~~~~~l~s~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l 339 (479)
+|++. .|+.++. ...|.+||+.+++ .+..+.. . .+..++|+| ++ ++
T Consensus 112 spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--~~~~l~~-~-~~~~~~~sp-dg-~~ 184 (347)
T 2gop_A 112 NEDSR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--VIEEFEK-P-RFSSGIWHR-DK-IV 184 (347)
T ss_dssp CTTSS-EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE--EEEEEEE-E-TTCEEEEET-TE-EE
T ss_pred CCCCC-EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--EEeeecC-C-CcccccCCC-Ce-EE
Confidence 99995 4555542 2579999998876 3233333 3 788999999 88 88
Q ss_pred EEEeCCC-------cEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC--------CCEEEEeCCC
Q 011709 340 LTGSADN-------SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--------GLLNIWDYEK 404 (479)
Q Consensus 340 ~tgs~dg-------~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D--------g~v~iwd~~~ 404 (479)
++++.++ ...||.+.. +. ...+..+ ..+..+ +|+|++++ .++.+ ..|.+|| .
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~~d~------~~-~~~l~~~-~~~~~~--spdg~~l~-~~~~~~~~~~~~~~~l~~~d--~ 251 (347)
T 2gop_A 185 VNVPHREIIPQYFKFWDIYIWED------GK-EEKMFEK-VSFYAV--DSDGERIL-LYGKPEKKYMSEHNKLYIYD--G 251 (347)
T ss_dssp EEEECCCSSCCSSCCEEEEEEET------TE-EEEEEEE-ESEEEE--EECSSCEE-EEECCSSSCCCSSCEEEEEC--S
T ss_pred EEEecccccccccccccEEEeCC------Cc-eEEeccC-cceeeE--CCCCCEEE-EEEccccCCccccceEEEEC--C
Confidence 8776652 445555443 33 3334334 555544 99999754 44433 3677887 3
Q ss_pred CCccccCCCCCCCCCCeeEEEeCCCCC-cee-EEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 405 VGKKVEQGPRTTNYPAGLFFQHAGHSP-SSS-IKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~-~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
+... ....++.. +.. +.|+ ++ .+++++. ++.+++| ..
T Consensus 252 -~~~~--------------~l~~~~~~~~~~~~~~s-dg-~~~~~~~-----~~~~~l~-~~ 290 (347)
T 2gop_A 252 -KEVM--------------GILDEVDRGVGQAKIKD-GK-VYFTLFE-----EGSVNLY-IW 290 (347)
T ss_dssp -SCEE--------------ESSTTCCSEEEEEEEET-TE-EEEEEEE-----TTEEEEE-EE
T ss_pred -CceE--------------eccccCCcccCCccEEc-Cc-EEEEEec-----CCcEEEE-Ec
Confidence 2211 11123322 554 8899 88 7777777 7888998 54
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.45 E-value=2e-11 Score=114.15 Aligned_cols=225 Identities=11% Similarity=0.028 Sum_probs=145.8
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCC----CceeeeeecCCCCc
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD----NAEFALAMCPTEPY 210 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~----~~v~~l~~s~~~~~ 210 (479)
..+........+++++ ++.++++...++.|.+||..+. +....+..... .....+++ +++.
T Consensus 78 ~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~------------~~~~~i~~g~~~~~~~~p~~i~~--~~~~ 142 (328)
T 3dsm_A 78 GRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTY------------EITGYIECPDMDMESGSTEQMVQ--YGKY 142 (328)
T ss_dssp EEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTT------------EEEEEEECTTCCTTTCBCCCEEE--ETTE
T ss_pred EEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCC------------eEEEEEEcCCccccCCCcceEEE--ECCE
Confidence 3344556788999988 5666666658899999999887 22223332220 02356777 4445
Q ss_pred EEEec--CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEee
Q 011709 211 VLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288 (479)
Q Consensus 211 l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 288 (479)
|+.+. .++.|.++|+.+.... ..+.. ......++++|
T Consensus 143 lyv~~~~~~~~v~viD~~t~~~~----------------------------------------~~i~~-g~~p~~i~~~~ 181 (328)
T 3dsm_A 143 VYVNCWSYQNRILKIDTETDKVV----------------------------------------DELTI-GIQPTSLVMDK 181 (328)
T ss_dssp EEEEECTTCCEEEEEETTTTEEE----------------------------------------EEEEC-SSCBCCCEECT
T ss_pred EEEEcCCCCCEEEEEECCCCeEE----------------------------------------EEEEc-CCCccceEEcC
Confidence 55444 4889999999765332 11111 12345788899
Q ss_pred CCCcEEEEEecC----------CeEEEEeCCCCCCCceeeeccC-CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 011709 289 SSAQEFCSVGDD----------SCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (479)
Q Consensus 289 ~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~ 357 (479)
++ .+++++..+ +.|.++|..+++ +...+... ......++|+| ++.+|+++.. .|.+||..+
T Consensus 182 dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t-- 253 (328)
T 3dsm_A 182 YN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFT--VEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEA-- 253 (328)
T ss_dssp TS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--EEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTC--
T ss_pred CC-CEEEEECCCccCCccccCCceEEEEECCCCe--EEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCC--
Confidence 88 566666554 789999998877 44444322 34689999999 8888887765 899999976
Q ss_pred CCCCCCcee--eecCCCCcEEEEEEecCCCcEEEEE----eCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC
Q 011709 358 SNGVGSPIN--KFEGHSAAVLCVQWSPDKSSVFGSS----AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS 430 (479)
Q Consensus 358 ~~~~~~~~~--~~~~h~~~v~~l~~~p~~~~llas~----s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~ 430 (479)
++... .+..+......++++|++..++++. ..++.|.+||.. ++.+..... ...|..+.|.|.-|.
T Consensus 254 ----~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~--g~~~~~i~~-G~~P~~~~~~~~~~~ 325 (328)
T 3dsm_A 254 ----DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ--GKLIDEFYV-GIIPGAFCWKLEHHH 325 (328)
T ss_dssp ----SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT--CCEEEEEEE-EESEEEEEEECCCCC
T ss_pred ----CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC--CCEEEEEEe-ccCcceEEEeccccc
Confidence 33221 1222246789999999766688887 678999999987 333332222 125566666666554
No 189
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.44 E-value=2.9e-12 Score=120.84 Aligned_cols=192 Identities=11% Similarity=0.055 Sum_probs=130.4
Q ss_pred ceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC
Q 011709 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (479)
.++.|++++..+++++|+.++ +.+|++.+......... ....+.... .+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~-----------------------------~~~~~~~~~-~l 87 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDS-----------------------------TPLTFKWEK-EI 87 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSS-----------------------------CCCCCSEEE-EC
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccc-----------------------------ccccceEEe-eC
Confidence 378999999999999999875 56699864321110000 001111222 35
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~ 357 (479)
.. |+.|+| ++ .+|+++ .++.|++||+++.. .......|...+.++.+.+ . -+++++.||.|.+||+..
T Consensus 88 p~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~-- 155 (388)
T 1xip_A 88 PD-VIFVCF--HG-DQVLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRT-- 155 (388)
T ss_dssp TT-EEEEEE--ET-TEEEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTT--
T ss_pred CC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhhh--ccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccC--
Confidence 56 999999 56 677777 88999999999876 3445557788899888776 2 388899999999999987
Q ss_pred CCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCcc-ccCCCCCCCCCCeeEEEeCCCCC-ceeE
Q 011709 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK-VEQGPRTTNYPAGLFFQHAGHSP-SSSI 435 (479)
Q Consensus 358 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~-~~~~~~~~~~~~~l~~~~~gh~~-~~~~ 435 (479)
+.... +...|++++|+|+| ++.|..||++++|+....... .... ..|+.+ -.+.+|.. |.++
T Consensus 156 ----~~~~~----~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I----~~Pp~~-~~~~~~~~~V~sI 219 (388)
T 1xip_A 156 ----KSTKQ----LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEF----SLPSEL-EELPVEEYSPLSV 219 (388)
T ss_dssp ----CCEEE----EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEE----CCCHHH-HTSCTTTSEEEEE
T ss_pred ----Ccccc----ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCcccccccee----cCCccc-ccccCCCeeEEEE
Confidence 33332 45689999999999 357888999999988763200 1000 012221 01113434 8999
Q ss_pred EEecCCCeeeecC
Q 011709 436 KFVLRESCLVDNN 448 (479)
Q Consensus 436 ~~sp~~~~l~~~~ 448 (479)
.|.+++.++++-+
T Consensus 220 ~wl~~~~flv~y~ 232 (388)
T 1xip_A 220 TILSPQDFLAVFG 232 (388)
T ss_dssp EESSSSEEEEEEE
T ss_pred EEecCCeEEEEEc
Confidence 9999999888743
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.44 E-value=3.8e-11 Score=124.35 Aligned_cols=250 Identities=9% Similarity=-0.018 Sum_probs=160.2
Q ss_pred cceeeEEecCCcccCCCcceEEEEEEEeeCCCCCceEEEEEEEecCcchhhhhcccccCcccCCCceeeEEEecCCCcee
Q 011709 65 WPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVN 144 (479)
Q Consensus 65 wpsl~~~w~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 144 (479)
|....+.|.|+- .+|.++...+|++...|++++++.-.. . . ...+.. ....
T Consensus 121 ~~~~~~~~SPDG--------~~la~~~~~~G~~~~~i~v~dl~tg~~-------~---~----------~~~~~~-~~~~ 171 (695)
T 2bkl_A 121 VSLGTWAVSWDG--------KKVAFAQKPNAADEAVLHVIDVDSGEW-------S---K----------VDVIEG-GKYA 171 (695)
T ss_dssp EEEEEEEECTTS--------SEEEEEEEETTCSCCEEEEEETTTCCB-------C---S----------SCCBSC-CTTC
T ss_pred EEEEEEEECCCC--------CEEEEEECCCCCceEEEEEEECCCCCC-------c---C----------CcccCc-cccc
Confidence 344566676652 456666667787888899887542111 0 0 000111 1126
Q ss_pred EEEecCCCCcEEEEEeCCCc-------------EEEEECCCCCCccccCCCCCCCCcEEEe--ccCCCceeeeeecCCCC
Q 011709 145 RIRELPQNTKIVATHTDSPD-------------VLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEP 209 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~l~~s~~~~ 209 (479)
.++|+| +++.|+.++.|.. |++|++.++.. .....+. .|.. .+.++.|+|+|+
T Consensus 172 ~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~----------~~~lv~~~~~~~~-~~~~~~~SpDG~ 239 (695)
T 2bkl_A 172 TPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS----------KDTVVHERTGDPT-TFLQSDLSRDGK 239 (695)
T ss_dssp CCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG----------GCEEEECCCCCTT-CEEEEEECTTSC
T ss_pred ceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch----------hceEEEecCCCCE-EEEEEEECCCCC
Confidence 789999 7778888888766 99999988721 1122233 2333 467999999999
Q ss_pred cEEEecCCC----cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEE
Q 011709 210 YVLSGGKDK----SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (479)
Q Consensus 210 ~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (479)
+|+.++.++ .|.+|+..++. ...+..+...+....
T Consensus 240 ~l~~~~~~~~~~~~l~~~~~~~~~-----------------------------------------~~~l~~~~~~~~~~~ 278 (695)
T 2bkl_A 240 YLFVYILRGWSENDVYWKRPGEKD-----------------------------------------FRLLVKGVGAKYEVH 278 (695)
T ss_dssp CEEEEEEETTTEEEEEEECTTCSS-----------------------------------------CEEEEECSSCCEEEE
T ss_pred EEEEEEeCCCCceEEEEEcCCCCc-----------------------------------------eEEeecCCCceEEEE
Confidence 998877666 56666543211 133444555566666
Q ss_pred EeeCCCcEEEEEe---cCCeEEEEeCCCCCCC-ceeeeccC-CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 011709 286 FCPSSAQEFCSVG---DDSCLILWDARVGTSP-VIKVEKAH-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (479)
Q Consensus 286 ~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~-~~~~~~~~-~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~ 360 (479)
| +++. +++.+. .++.|.+||+.++... .......+ ...+..++|+ ++.++++...|+..+||.+...
T Consensus 279 ~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~---- 350 (695)
T 2bkl_A 279 A-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLK---- 350 (695)
T ss_dssp E-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETT----
T ss_pred e-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCC----
Confidence 6 6774 555554 3589999999876521 12222233 4567888887 5788999999999888876631
Q ss_pred CCCceeeecCC-CCcEEEEEEecCCCcEEEEEeC---CCCEEEEeCCCC
Q 011709 361 VGSPINKFEGH-SAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKV 405 (479)
Q Consensus 361 ~~~~~~~~~~h-~~~v~~l~~~p~~~~llas~s~---Dg~v~iwd~~~~ 405 (479)
+..+..+..+ .+.|..+.++|++..++++.+. .++|.+||+.++
T Consensus 351 -g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 351 -GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp -CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred -CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 3455666655 6678889999998866555543 478999999874
No 191
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.43 E-value=4.5e-12 Score=119.52 Aligned_cols=181 Identities=12% Similarity=0.083 Sum_probs=128.6
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEE
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV 221 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~ 221 (479)
.++.+++++ ...++++|+.+ .+++|++......... ......+.. ...+.. |+.|+| ++.+|+++ .++.|+
T Consensus 39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~-~~~~~~~~~-~~~lp~--V~~l~f--d~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITS-DSTPLTFKW-EKEIPD--VIFVCF--HGDQVLVS-TRNALY 109 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHS-SSCCCCCSE-EEECTT--EEEEEE--ETTEEEEE-ESSEEE
T ss_pred cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhcc-ccccccceE-EeeCCC--eeEEEE--CCCEEEEE-cCCcEE
Confidence 589999999 66689999988 5667997654210000 000112222 223443 899999 88999998 889999
Q ss_pred EEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC
Q 011709 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (479)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (479)
+||+.+.... .....|...+.++.+.+. + +++++.||
T Consensus 110 v~dv~sl~~~----------------------------------------~~~~~~~~~v~~i~~~~p--~-~av~~~dG 146 (388)
T 1xip_A 110 SLDLEELSEF----------------------------------------RTVTSFEKPVFQLKNVNN--T-LVILNSVN 146 (388)
T ss_dssp EEESSSTTCE----------------------------------------EEEEECSSCEEEEEECSS--E-EEEEETTS
T ss_pred EEEchhhhcc----------------------------------------CccceeecceeeEEecCC--C-EEEEECCC
Confidence 9999754321 233445667888776643 3 88899999
Q ss_pred eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCc--eeee------c---C
Q 011709 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP--INKF------E---G 370 (479)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~--~~~~------~---~ 370 (479)
.|.+||+.++. ... +...|.|++|+| +| ++.|..||+|++|+... ... ..++ . +
T Consensus 147 ~L~v~dl~~~~--~~~----~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~------~~~~~k~~I~~Pp~~~~~~~ 211 (388)
T 1xip_A 147 DLSALDLRTKS--TKQ----LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRN------GEMEKQFEFSLPSELEELPV 211 (388)
T ss_dssp EEEEEETTTCC--EEE----EEESEEEEEECS-SE--EEEEETTSCEEEEEEET------TEEEEEEEECCCHHHHTSCT
T ss_pred CEEEEEccCCc--ccc----ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCC------ccccccceecCCcccccccC
Confidence 99999999877 322 456899999999 77 78899999999998876 232 3344 2 4
Q ss_pred CCCcEEEEEEecCCCcEEE
Q 011709 371 HSAAVLCVQWSPDKSSVFG 389 (479)
Q Consensus 371 h~~~v~~l~~~p~~~~lla 389 (479)
|...|.+|.|.+++.++++
T Consensus 212 ~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 212 EEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp TTSEEEEEEESSSSEEEEE
T ss_pred CCeeEEEEEEecCCeEEEE
Confidence 7789999999999886443
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.43 E-value=3e-10 Score=113.52 Aligned_cols=271 Identities=11% Similarity=0.029 Sum_probs=173.0
Q ss_pred eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECC--CCCCccccCCCCCCCCcEEEeccCCCceeeeeec----C
Q 011709 133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE--AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC----P 206 (479)
Q Consensus 133 ~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s----~ 206 (479)
....+.....+..+.++| +++++++++.|+.|.+||+. +. +....+.... ....++|+ |
T Consensus 189 v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~------------~~v~~i~~G~--~P~~ia~s~~~~p 253 (567)
T 1qks_A 189 IKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEP------------TTVAEIKIGS--EARSIETSKMEGW 253 (567)
T ss_dssp EEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSC------------CEEEEEECCS--EEEEEEECCSTTC
T ss_pred EEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCC------------cEeEEEecCC--CCceeEEccccCC
Confidence 344455556778999999 88888889999999999996 44 3334444433 24799999 6
Q ss_pred CCCcEEEec-CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC-CCceEEE
Q 011709 207 TEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDV 284 (479)
Q Consensus 207 ~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l 284 (479)
+|++++++. .+++|.++|..+............ .......| ...+..+
T Consensus 254 DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~------------------------------~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 254 EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM------------------------------TYDEQEYHPEPRVAAI 303 (567)
T ss_dssp TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE------------------------------CTTTCCEESCCCEEEE
T ss_pred CCCEEEEEEccCCeEEEEECCCCcEEEEEecccc------------------------------ccccccccCCCceEEE
Confidence 999887666 469999999876433211110000 00000012 2267788
Q ss_pred EEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCC
Q 011709 285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGS 363 (479)
Q Consensus 285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~ 363 (479)
..+++++.++++..++|.|.++|........+... ........+.|+| ++++|++++ .++.|.++|+.+ ++
T Consensus 304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t------~k 375 (567)
T 1qks_A 304 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKE------GK 375 (567)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTT------TE
T ss_pred EEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECC-CCCEEEEEeCCCCeEEEEECCC------Cc
Confidence 88998877888888899999999987653222222 3445677899999 888776655 578999999997 55
Q ss_pred ceeeecC-----CCCcEEEEEEecCCCcEEEEEe-CCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEE
Q 011709 364 PINKFEG-----HSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIK 436 (479)
Q Consensus 364 ~~~~~~~-----h~~~v~~l~~~p~~~~llas~s-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~ 436 (479)
.+..+.. |.+.-..+ ++|++..+++++. .++.|.++|....+... .....+....+... ..-++
T Consensus 376 l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~--------~~~kvv~~i~~~g~g~~~i~ 446 (567)
T 1qks_A 376 LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPD--------NAWKILDSFPALGGGSLFIK 446 (567)
T ss_dssp EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT--------TBTSEEEEEECSCSCCCCEE
T ss_pred EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcc--------ccCEEEEEEecCCCCCEEEE
Confidence 5544432 33212122 6888665776664 46899999987632111 11223333333322 35577
Q ss_pred EecCCCeeeecCCCccc---cceeEEEEeeccc
Q 011709 437 FVLRESCLVDNNHGLSY---ANKKIKIYCHLEA 466 (479)
Q Consensus 437 ~sp~~~~l~~~~~~~~~---~d~~i~i~~~~~~ 466 (479)
.+|++++|...... .- ..++|.+++....
T Consensus 447 ~~p~~~~l~v~~~~-~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 447 THPNSQYLYVDATL-NPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CCTTCSEEEEECTT-CSSHHHHTCEEEEEGGGC
T ss_pred eCCCCCeEEEecCC-CCCcccCceEEEEECCcc
Confidence 89999988875531 00 0358999987765
No 193
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.43 E-value=1.3e-10 Score=112.02 Aligned_cols=249 Identities=13% Similarity=0.094 Sum_probs=156.5
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC--
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK-- 218 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg-- 218 (479)
.....|++.+ +++++++...++.|++||..++ ........ . .... ++|+++++.|+++..++
T Consensus 131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g------------~~~~~~~~-~-~~~~-ia~~~~g~~l~~~d~~~~~ 194 (409)
T 3hrp_A 131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDN------------KVTTVHPG-F-KGGK-PAVTKDKQRVYSIGWEGTH 194 (409)
T ss_dssp CCEEEEEECS-TTEEEEEETTTTEEEEEETTTT------------EEEEEEET-C-CBCB-CEECTTSSEEEEEBSSTTC
T ss_pred CCceEEEEeC-CCCEEEEecCCCcEEEEECCCC------------EEEEeecc-C-CCCc-eeEecCCCcEEEEecCCCc
Confidence 3577899998 7788888888899999999876 22222222 2 2234 99999999888888766
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee-cCCCCceEEEEEeeCCCcEEEEE
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
.|.+++.......... ..+ ......+.+++++|++..+++ +
T Consensus 195 ~I~~~d~~~~~~~~~~-------------------------------------g~~~~~~~~~p~~iav~p~~g~lyv-~ 236 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRI-------------------------------------GQLGSTFSGKIGAVALDETEEWLYF-V 236 (409)
T ss_dssp EEEEEEGGGTTCEEEE-------------------------------------EECCTTSCSCCCBCEECTTSSEEEE-E
T ss_pred eEEEEEcCCCceeEEe-------------------------------------eeccchhcCCcEEEEEeCCCCeEEE-E
Confidence 7888887543210000 000 113345678999995435444 6
Q ss_pred ecCCeEEEEeCCCCCCCceee--eccCCCCe--EEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCC--
Q 011709 298 GDDSCLILWDARVGTSPVIKV--EKAHDADL--HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-- 371 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v--~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h-- 371 (479)
..++.|..||..++....... ..++...- ..++|+|.++.++++-..++.|+.||... . +..+.++
T Consensus 237 d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-------~-~~~~~g~~~ 308 (409)
T 3hrp_A 237 DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-------E-CEWFCGSAT 308 (409)
T ss_dssp CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-------C-EEEEEECTT
T ss_pred ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-------C-EEEEEeCCC
Confidence 778899999998776211110 11222222 38999994466777777788999999764 2 2233222
Q ss_pred -------------CCcEEEEEEecCCCcEEEEEe-CCCCEEEEeCCCCCccccCCCC--C---CCCCCeeEEEeCC-CCC
Q 011709 372 -------------SAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPR--T---TNYPAGLFFQHAG-HSP 431 (479)
Q Consensus 372 -------------~~~v~~l~~~p~~~~llas~s-~Dg~v~iwd~~~~~~~~~~~~~--~---~~~~~~l~~~~~g-h~~ 431 (479)
-.....++++|++. ++++-+ .++.|+.||+..+ ........ . ..+++ ..+ -..
T Consensus 309 ~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G-~v~~~~g~~~~~g~~~g~~-----~~~~~~~ 381 (409)
T 3hrp_A 309 QKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDG-YVSTVAGQVDVASQIDGTP-----LEATFNY 381 (409)
T ss_dssp CCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTT-EEEEEEECTTCBSCCCBST-----TTCCBSS
T ss_pred CCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCC-EEEEEeCCCCCCCcCCCCh-----hceEeCC
Confidence 13578999999998 777887 8899999997653 21100000 0 00000 000 123
Q ss_pred ceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 432 SSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 432 ~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
+..+++++++..+++... ++.|+.+..
T Consensus 382 P~giavd~~g~lyVad~~-----n~~Ir~i~~ 408 (409)
T 3hrp_A 382 PYDICYDGEGGYWIAEAW-----GKAIRKYAV 408 (409)
T ss_dssp EEEEEECSSSEEEEEEST-----TCEEEEEEE
T ss_pred ceEEEEcCCCCEEEEECC-----CCeEEEEEe
Confidence 688999999777776666 778876643
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.42 E-value=3.9e-11 Score=109.09 Aligned_cols=216 Identities=10% Similarity=0.059 Sum_probs=149.8
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCcccc
Q 011709 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 232 (479)
Q Consensus 153 ~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~ 232 (479)
+++|++++.++.|++||..++ +.+..+..+....+.++.++|+|++|++ .++.|..||. ++...
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG------------~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~- 68 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTK------------EIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGREL- 68 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTT------------EEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEE-
T ss_pred CcEEEeeCCCCEEEEEECCCC------------eEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEE-
Confidence 479999999999999999888 5566676665224689999999998883 4678999987 33221
Q ss_pred ccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC-CCceEEEEEeeCCCcEEEEEec-CCeEEEEeCCC
Q 011709 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARV 310 (479)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~ 310 (479)
..+..+ ...+.++.+.++| +++++.+. ++.|..+|. +
T Consensus 69 ---------------------------------------W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~ 107 (276)
T 3no2_A 69 ---------------------------------------WNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-K 107 (276)
T ss_dssp ---------------------------------------EEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-T
T ss_pred ---------------------------------------EEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-C
Confidence 223322 2467888999999 67777766 788888886 4
Q ss_pred CCCCceeeec------cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCC
Q 011709 311 GTSPVIKVEK------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384 (479)
Q Consensus 311 ~~~~~~~~~~------~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 384 (479)
++ .+..+. .+......+++.+ +++++++.+.++.|.+||.. ++.+.++..+ ..+.++.+.+++
T Consensus 108 Gk--~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-------G~~~w~~~~~-~~~~~~~~~~~g 176 (276)
T 3no2_A 108 GE--VLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-------GQLLNSVKLS-GTPFSSAFLDNG 176 (276)
T ss_dssp SC--EEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-------SCEEEEEECS-SCCCEEEECTTS
T ss_pred CC--EEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-------CCEEEEEECC-CCccceeEcCCC
Confidence 55 333322 1222345567788 89999999999999999976 5778877754 456678888998
Q ss_pred CcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC--CceeEEEecCCCeeeec
Q 011709 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS--PSSSIKFVLRESCLVDN 447 (479)
Q Consensus 385 ~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~--~~~~~~~sp~~~~l~~~ 447 (479)
. ++++++.++.|..+|..++ +.+....... ..+.. .+..++..++|..+++.
T Consensus 177 ~-~~v~~~~~~~v~~~d~~tG-~~~w~~~~~~---------~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 177 D-CLVACGDAHCFVQLNLESN-RIVRRVNAND---------IEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp C-EEEECBTTSEEEEECTTTC-CEEEEEEGGG---------SBSCCCSEEEEEEECTTSCEEEEE
T ss_pred C-EEEEeCCCCeEEEEeCcCC-cEEEEecCCC---------CCCccccccccceEcCCCCEEEEe
Confidence 8 5667777888999998874 3222111000 00111 15677778888877776
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.42 E-value=4.5e-11 Score=108.30 Aligned_cols=198 Identities=10% Similarity=0.008 Sum_probs=139.2
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
..+..+++.+ +++++++.. ++.|.+||...... ..+.......+.+++++++|+.+++...++.|
T Consensus 67 ~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-------------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i 131 (270)
T 1rwi_B 67 YQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-------------TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRV 131 (270)
T ss_dssp CSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-------------EECCCCSCSSEEEEEECTTCCEEEEEGGGTEE
T ss_pred CCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-------------eeeecCCcCCCcceEECCCCCEEEEECCCCEE
Confidence 4678899998 666777666 88999999876521 11111111246899999999877777778899
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecC
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (479)
.+|+..+.... .........+.++++++++ .++++...+
T Consensus 132 ~~~~~~~~~~~----------------------------------------~~~~~~~~~p~~i~~~~~g-~l~v~~~~~ 170 (270)
T 1rwi_B 132 VKLAAGSKTQT----------------------------------------VLPFTGLNDPDGVAVDNSG-NVYVTDTDN 170 (270)
T ss_dssp EEECTTCCSCE----------------------------------------ECCCCSCCSCCCEEECTTC-CEEEEEGGG
T ss_pred EEEECCCceeE----------------------------------------eeccccCCCceeEEEeCCC-CEEEEECCC
Confidence 99975432110 0011122356788999988 677777778
Q ss_pred CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEE
Q 011709 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW 380 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 380 (479)
+.|.+||..... .......+...+.++++++ ++.++++...++.|.+||... .........+...+.++++
T Consensus 171 ~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~------~~~~~~~~~~~~~p~~i~~ 241 (270)
T 1rwi_B 171 NRVVKLEAESNN--QVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGS------TTSTVLPFTGLNTPLAVAV 241 (270)
T ss_dssp TEEEEECTTTCC--EEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTC------SCCEECCCCSCSCEEEEEE
T ss_pred CEEEEEecCCCc--eEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCC------CcceeeccCCCCCceeEEE
Confidence 899999988765 2222223346789999999 788888877889999999865 2222222233457899999
Q ss_pred ecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 381 SPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 381 ~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++++. ++++...++.|+++++..
T Consensus 242 ~~~g~-l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 242 DSDRT-VYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CTTCC-EEEEEGGGTEEEEECCCG
T ss_pred CCCCC-EEEEECCCCEEEEEcCCC
Confidence 99997 788888899999999876
No 196
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.41 E-value=2.3e-10 Score=114.28 Aligned_cols=192 Identities=9% Similarity=0.059 Sum_probs=138.3
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecC--CCc
Q 011709 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ--DHI 229 (479)
Q Consensus 152 ~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~--~~~ 229 (479)
.+.++++...+++|.++|..++ +.+..+.... .+..+.|+|+|++|++++.|+.|.+||+. +..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~------------~v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~ 231 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTY------------EIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT 231 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTC------------CEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC
T ss_pred CceEEEEeCCCCeEEEEECCCC------------eEEEEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc
Confidence 4557778888999999999987 4444554433 35799999999999999999999999985 321
Q ss_pred cccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe----eCCCcEEEEEecCCeEEE
Q 011709 230 TSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC----PSSAQEFCSVGDDSCLIL 305 (479)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~~~~l~s~~~dg~i~i 305 (479)
. +..+.. ......++|+ |+|..++++...++.|.+
T Consensus 232 ~----------------------------------------v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~V 270 (567)
T 1qks_A 232 T----------------------------------------VAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVI 270 (567)
T ss_dssp E----------------------------------------EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEE
T ss_pred E----------------------------------------eEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEE
Confidence 1 122222 2235789999 699666666667799999
Q ss_pred EeCCCCCCCceeeecc----------CC-CCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCc
Q 011709 306 WDARVGTSPVIKVEKA----------HD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (479)
Q Consensus 306 wd~~~~~~~~~~~~~~----------~~-~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (479)
+|..+.+ .+..... |. ..+..+..++....++++...+|.|.++|..... ...+..+. ....
T Consensus 271 iD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~----~~~v~~i~-~~~~ 343 (567)
T 1qks_A 271 MDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN----NLKTTEIS-AERF 343 (567)
T ss_dssp EETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS----EEEEEEEE-CCSS
T ss_pred EECCCCc--EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc----cceeeeee-cccc
Confidence 9998877 4444321 22 2678888898556667777778999999987621 11122232 3345
Q ss_pred EEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
...+.|+|+++++++++..++.|.++|+.+.
T Consensus 344 ~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 344 LHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred ccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 6789999999998877777899999999874
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.40 E-value=1.4e-09 Score=99.75 Aligned_cols=226 Identities=8% Similarity=-0.009 Sum_probs=153.5
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEe--ccCCCceeeeeecCCCCcEEEecC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEPYVLSGGK 216 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~l~~s~~~~~l~s~s~ 216 (479)
+...+..+++.+ ++.++++...++.|..||.... ...+. ... ..+.++++.++|..+++...
T Consensus 55 ~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~--------------~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~ 118 (299)
T 2z2n_A 55 PDAKVMCLTISS-DGEVWFTENAANKIGRITKKGI--------------IKEYTLPNPD-SAPYGITEGPNGDIWFTEMN 118 (299)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSC--------------EEEEECSSTT-CCEEEEEECTTSCEEEEETT
T ss_pred ccCceeeEEECC-CCCEEEeCCCCCeEEEECCCCc--------------EEEEeCCCcC-CCceeeEECCCCCEEEEecC
Confidence 346788999998 7778888777889999997622 11111 122 34789999999988887777
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
++.|.+||. ++.... .....+...+..+++.+++ .++++
T Consensus 119 ~~~i~~~d~-~g~~~~---------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~ 157 (299)
T 2z2n_A 119 GNRIGRITD-DGKIRE---------------------------------------YELPNKGSYPSFITLGSDN-ALWFT 157 (299)
T ss_dssp TTEEEEECT-TCCEEE---------------------------------------EECSSTTCCEEEEEECTTS-CEEEE
T ss_pred CceEEEECC-CCCEEE---------------------------------------ecCCCCCCCCceEEEcCCC-CEEEE
Confidence 889999987 321110 0111133468899999988 67777
Q ss_pred EecCCeEEEEeCCCCCCCceee-eccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee-eecCCCCc
Q 011709 297 VGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAA 374 (479)
Q Consensus 297 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~ 374 (479)
...++.|..||. +++ .... .......+.++++++ ++.++++...++.|.+||. . +.... ....+...
T Consensus 158 ~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~ 226 (299)
T 2z2n_A 158 ENQNNAIGRITE-SGD--ITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-S------GEITEFKIPTPNAR 226 (299)
T ss_dssp ETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-T------CCEEEEECSSTTCC
T ss_pred eCCCCEEEEEcC-CCc--EEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-C------CcEEEEECCCCCCC
Confidence 777889999998 655 2222 223456688999999 7887777777889999998 4 33222 23345567
Q ss_pred EEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC-CCCceeEEEecCCCeeeecCC
Q 011709 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g-h~~~~~~~~sp~~~~l~~~~~ 449 (479)
+.++++++++. ++++...++.|.+||... .. ..+...+ ...+.++++ +++...+++..
T Consensus 227 ~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g--~~-------------~~~~~~~~~~~~~~i~~-~~g~l~v~~~~ 285 (299)
T 2z2n_A 227 PHAITAGAGID-LWFTEWGANKIGRLTSNN--II-------------EEYPIQIKSAEPHGICF-DGETIWFAMEC 285 (299)
T ss_dssp EEEEEECSTTC-EEEEETTTTEEEEEETTT--EE-------------EEEECSSSSCCEEEEEE-CSSCEEEEETT
T ss_pred ceeEEECCCCC-EEEeccCCceEEEECCCC--ce-------------EEEeCCCCCCccceEEe-cCCCEEEEecC
Confidence 89999999988 676665678999999832 11 1111222 234788899 88887776544
No 198
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.39 E-value=3e-12 Score=122.95 Aligned_cols=232 Identities=11% Similarity=0.054 Sum_probs=134.5
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceee-------------------eeec
Q 011709 145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA-------------------LAMC 205 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~-------------------l~~s 205 (479)
.+.|+| +++.||.++.++.|++||+.++.. ......+.. .... +.|+
T Consensus 85 ~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~------------~~~~~~~~~-~~~~g~~l~~~~~~~~~~~~~~~~~~s 150 (396)
T 3c5m_A 85 GGFIST-DERAFFYVKNELNLMKVDLETLEE------------QVIYTVDEE-WKGYGTWVANSDCTKLVGIEILKRDWQ 150 (396)
T ss_dssp TCEECT-TSSEEEEEETTTEEEEEETTTCCE------------EEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred cceECC-CCCEEEEEEcCCcEEEEECCCCCc------------EEEEecccc-cCCCCCEEEeccCCccccccccccccC
Confidence 378899 888999999998999999987632 222222221 1111 5788
Q ss_pred CCCCcEEEe-----cCCCcEEEEecCCCccccccCCc---ccccCCC-CCc-eeecCCCCC---CCCCCCCCCCCCCCce
Q 011709 206 PTEPYVLSG-----GKDKSVVLWSIQDHITSSATDPA---TAKSAGS-SGS-IIKQSPKPG---DGNDKAADGPSVGPRG 272 (479)
Q Consensus 206 ~~~~~l~s~-----s~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~-~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~ 272 (479)
|+++.++.+ ..+..|.+||+.++......... ....... ... ++....... ...+..++........
T Consensus 151 pdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~ 230 (396)
T 3c5m_A 151 PLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK 230 (396)
T ss_dssp CCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE
T ss_pred CCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE
Confidence 999877654 35678999999876442211110 0111122 222 222222111 1334444444333322
Q ss_pred eecCC-CCceEEEEEeeCCCcEEEEEecC-----CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEe---
Q 011709 273 IYNGH-EDTVEDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--- 343 (479)
Q Consensus 273 ~~~~h-~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs--- 343 (479)
..... ...+..++|+|++.. |+.++.+ +.|.+||+.+++. .... ... ... +.|+|.++.++++++
T Consensus 231 l~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~-~~~-~~~-~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 231 IKEHAEGESCTHEFWIPDGSA-MAYVSYFKGQTDRVIYKANPETLEN--EEVM-VMP-PCS-HLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp SSCCCTTEEEEEEEECTTSSC-EEEEEEETTTCCEEEEEECTTTCCE--EEEE-ECC-SEE-EEEECSSSSEEEEEECCC
T ss_pred eeccCCCccccceEECCCCCE-EEEEecCCCCccceEEEEECCCCCe--EEee-eCC-CCC-CCccCCCCceEEEecCCc
Confidence 22211 235888999999954 4444333 4599999988772 2221 112 233 889884566777654
Q ss_pred -------------CCCcEEEEecCCCCCCCCCCceeeecCCCC-----------cEEEEEEecCCCcEEEEEeCCCCEEE
Q 011709 344 -------------ADNSVRMFDRRNLTSNGVGSPINKFEGHSA-----------AVLCVQWSPDKSSVFGSSAEDGLLNI 399 (479)
Q Consensus 344 -------------~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-----------~v~~l~~~p~~~~llas~s~Dg~v~i 399 (479)
.++.|++||+.. +. +..+..+.. .+..++|+|+++.|+.++..++...|
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~------~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l 377 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKA------KS-AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAI 377 (396)
T ss_dssp ----------CCCCCCEEEEEETTT------TB-CCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred ceeeccccccccCCCCcEEEEeccc------Cc-eEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceE
Confidence 347899999986 33 234444443 25678999999976655555676666
Q ss_pred EeCC
Q 011709 400 WDYE 403 (479)
Q Consensus 400 wd~~ 403 (479)
|.+.
T Consensus 378 ~~~~ 381 (396)
T 3c5m_A 378 YIAD 381 (396)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 199
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.38 E-value=1.3e-09 Score=100.13 Aligned_cols=238 Identities=9% Similarity=0.002 Sum_probs=159.1
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCc
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~ 219 (479)
...+.++.+.+ ++.++++...++.|.+||.. +... ...+..+. ..+.++++.++|..+++...++.
T Consensus 19 ~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~-----------~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~~~ 84 (300)
T 2qc5_A 19 DSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIK-----------EFEVPTPD-AKVMCLIVSSLGDIWFTENGANK 84 (300)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE-----------EEECSSTT-CCEEEEEECTTSCEEEEETTTTE
T ss_pred CCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceE-----------EEECCCCC-CcceeEEECCCCCEEEEecCCCe
Confidence 45788999988 67788877778899999987 4111 01111222 24789999999987777777888
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
|..+|.. +.... ..+......+.++++.+++ .++++...
T Consensus 85 v~~~d~~-g~~~~---------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~~~~ 123 (300)
T 2qc5_A 85 IGKLSKK-GGFTE---------------------------------------YPLPQPDSGPYGITEGLNG-DIWFTQLN 123 (300)
T ss_dssp EEEECTT-SCEEE---------------------------------------EECSSTTCCEEEEEECSTT-CEEEEETT
T ss_pred EEEECCC-CCeEE---------------------------------------ecCCCCCCCCccceECCCC-CEEEEccC
Confidence 9999876 22110 1111123468899999888 67777776
Q ss_pred CCeEEEEeCCCCCCCcee-eeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee-eecCCCCcEEE
Q 011709 300 DSCLILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLC 377 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~ 377 (479)
++.|..+|.. ++ ... ........+.++++++ +++++++...++.|..||. . +.... ....+...+.+
T Consensus 124 ~~~i~~~~~~-g~--~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~~~ 192 (300)
T 2qc5_A 124 GDRIGKLTAD-GT--IYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-T------GKLEEYPLPTNAAAPVG 192 (300)
T ss_dssp TTEEEEECTT-SC--EEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCEEE
T ss_pred CCeEEEECCC-CC--EEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-C------CcEEEeeCCCCCCCcce
Confidence 8899999987 55 222 2223456789999999 8887777766889999998 3 23322 22234457899
Q ss_pred EEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEe-CCCCCceeEEEecCCCeeeecCCCccccce
Q 011709 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGHSPSSSIKFVLRESCLVDNNHGLSYANK 456 (479)
Q Consensus 378 l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~-~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~ 456 (479)
+++++++. ++++....+.|.+||... .. ..+.. .+...+.++++.+++...++... ++
T Consensus 193 i~~d~~g~-l~v~~~~~~~i~~~~~~g--~~-------------~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-----~~ 251 (300)
T 2qc5_A 193 ITSGNDGA-LWFVEIMGNKIGRITTTG--EI-------------SEYDIPTPNARPHAITAGKNSEIWFTEWG-----AN 251 (300)
T ss_dssp EEECTTSS-EEEEETTTTEEEEECTTC--CE-------------EEEECSSTTCCEEEEEECSTTCEEEEETT-----TT
T ss_pred EEECCCCC-EEEEccCCCEEEEEcCCC--cE-------------EEEECCCCCCCceEEEECCCCCEEEeccC-----CC
Confidence 99999886 666666677899999832 11 11111 22334788999999887666644 56
Q ss_pred eEEEEeec
Q 011709 457 KIKIYCHL 464 (479)
Q Consensus 457 ~i~i~~~~ 464 (479)
.|..|+..
T Consensus 252 ~i~~~~~~ 259 (300)
T 2qc5_A 252 QIGRITND 259 (300)
T ss_dssp EEEEECTT
T ss_pred eEEEECCC
Confidence 77777653
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.38 E-value=5.8e-11 Score=123.88 Aligned_cols=250 Identities=9% Similarity=-0.024 Sum_probs=148.6
Q ss_pred CCCceeEEEecCCCCcEEEEEeCC-C----cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDS-P----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~d-g----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
|...+..++|+| ++++||.++.+ | +|++||+.++. .... ..+.. .+..++|+|| +.|+.
T Consensus 161 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~------------~~~~-~~~~~-~~~~~~wspD-~~l~~ 224 (741)
T 1yr2_A 161 GATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGK------------PLAD-ELKWV-KFSGLAWLGN-DALLY 224 (741)
T ss_dssp --EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCC------------EEEE-EEEEE-ESCCCEESTT-SEEEE
T ss_pred CCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCC------------CCCc-cCCCc-eeccEEEECC-CEEEE
Confidence 334688999999 77777776553 3 69999999873 1111 11111 1358899999 98888
Q ss_pred ecCCCc--------------EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec--CC
Q 011709 214 GGKDKS--------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GH 277 (479)
Q Consensus 214 ~s~dg~--------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h 277 (479)
++.|+. |.+|++.++.... ...+. .+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~--------------------------------------~lv~~~~~~ 266 (741)
T 1yr2_A 225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD--------------------------------------QPVFATPEL 266 (741)
T ss_dssp EECCCC--------CCCCCEEEEEETTSCGGGC--------------------------------------EEEECCTTC
T ss_pred EEecCcccccccccCCCCCEEEEEECCCCchhC--------------------------------------EEEeccCCC
Confidence 776654 7888875432100 01122 23
Q ss_pred CCceEEEEEeeCCCcEEEEEecC-----CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC----CcE
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSV 348 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d----g~I 348 (479)
...+..+.|+|+|. +++..+.+ ..|.+||+.++.......+..+...+.... +| ++..|+..+.+ +.|
T Consensus 267 ~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l 343 (741)
T 1yr2_A 267 PKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKI 343 (741)
T ss_dssp TTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEE
T ss_pred CeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEE
Confidence 34588999999995 55555543 389999998762111233334444455543 47 77777777654 459
Q ss_pred EEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC
Q 011709 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (479)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g 428 (479)
.+||+.... ......+..+...+..+.|+ +..++++...|+..+||.+...+..... ....+
T Consensus 344 ~~~d~~~~~----~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~------------l~~~~ 405 (741)
T 1yr2_A 344 VRVDLSGST----PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGA------------VSLPG 405 (741)
T ss_dssp EEEECSSSS----CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEE------------CBCSS
T ss_pred EEEeCCCCc----cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceee------------ccCCC
Confidence 999987621 01223334455567778887 4457889999998888866532211110 11112
Q ss_pred CCCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 429 HSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 429 h~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
...+..+.++|++..++..... ....+.|.+|+..
T Consensus 406 ~~~v~~~~~s~d~~~l~~~~ss-~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 406 IGSASGLSGRPGDRHAYLSFSS-FTQPATVLALDPA 440 (741)
T ss_dssp SCEEEEEECCBTCSCEEEEEEE-TTEEEEEEEEETT
T ss_pred CeEEEEeecCCCCCEEEEEEcC-CCCCCEEEEEECC
Confidence 2336788899998766622110 0115788888743
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.37 E-value=3.7e-10 Score=103.94 Aligned_cols=229 Identities=13% Similarity=0.064 Sum_probs=145.0
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEE
Q 011709 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~v 222 (479)
--...|+|.++.++++...++.|+.||..++. . ..+. .. ..+.+++++++|+++++ . ++.|.+
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~------------~-~~~~-~~-~~~~~i~~~~dG~l~v~-~-~~~l~~ 77 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ------------V-QRVT-MD-APVSSVALRQSGGYVAT-I-GTKFCA 77 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCC------------E-EEEE-CS-SCEEEEEEBTTSSEEEE-E-TTEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCc------------E-EEEe-CC-CceEEEEECCCCCEEEE-E-CCeEEE
Confidence 34678899778888888889999999998762 1 1222 22 24789999999985444 4 567999
Q ss_pred EecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec-CCCCceEEEEEeeCCCcEEEEEecC-
Q 011709 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDD- 300 (479)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~d- 300 (479)
||..++....... ... .....+++++++|+| +++++...+
T Consensus 78 ~d~~~g~~~~~~~-------------------------------------~~~~~~~~~~~di~~d~dG-~l~~~~~~~~ 119 (297)
T 3g4e_A 78 LNWKEQSAVVLAT-------------------------------------VDNDKKNNRFNDGKVDPAG-RYFAGTMAEE 119 (297)
T ss_dssp EETTTTEEEEEEE-------------------------------------CCTTCSSEEEEEEEECTTS-CEEEEEEECC
T ss_pred EECCCCcEEEEEe-------------------------------------cCCCCCCCCCCCEEECCCC-CEEEecCCcc
Confidence 9987543211000 000 012357899999999 555544221
Q ss_pred --------CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEE-EEEeCCCcEEEEecCCCCCCCCCC-----cee
Q 011709 301 --------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS-----PIN 366 (479)
Q Consensus 301 --------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l-~tgs~dg~I~iwd~~~~~~~~~~~-----~~~ 366 (479)
..-.+|.+.... .......+....+.++|+| +++.| ++.+.++.|.+||+.... +. .+.
T Consensus 120 ~~~~~~~~~~~~l~~~d~~g--~~~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~----G~~~~~~~~~ 192 (297)
T 3g4e_A 120 TAPAVLERHQGALYSLFPDH--HVKKYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQT----GQISNRRSVY 192 (297)
T ss_dssp SBTTBCCTTCEEEEEECTTS--CEEEEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTT----CCEEEEEEEE
T ss_pred cccccccCCCcEEEEEECCC--CEEEEeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCC----CcccCcEEEE
Confidence 223444443222 1222223445578999999 77755 555667899999984211 22 223
Q ss_pred eecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC-CCceeEEEe-cCCCee
Q 011709 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-SPSSSIKFV-LRESCL 444 (479)
Q Consensus 367 ~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh-~~~~~~~~s-p~~~~l 444 (479)
.+..+...+..++++++|. ++++...++.|.+||..++ +++.....+ ..+++++|. |++..|
T Consensus 193 ~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG---------------~~~~~i~~p~~~~t~~~f~g~d~~~L 256 (297)
T 3g4e_A 193 KLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTG---------------KRLQTVKLPVDKTTSCCFGGKNYSEM 256 (297)
T ss_dssp ECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTC---------------CEEEEEECSSSBEEEEEEESGGGCEE
T ss_pred ECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCc---------------eEEEEEECCCCCceEEEEeCCCCCEE
Confidence 3344456788999999997 6777777788999998763 223333333 348999998 888766
Q ss_pred eecCC
Q 011709 445 VDNNH 449 (479)
Q Consensus 445 ~~~~~ 449 (479)
+.++.
T Consensus 257 ~vt~~ 261 (297)
T 3g4e_A 257 YVTCA 261 (297)
T ss_dssp EEEEB
T ss_pred EEEcC
Confidence 55443
No 202
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.36 E-value=1.1e-10 Score=107.36 Aligned_cols=201 Identities=8% Similarity=0.021 Sum_probs=132.4
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE----
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS---- 213 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s---- 213 (479)
.+.+.+.+++++| +++++++...++.|.+||..++.... ......+.....+..++++|+|+++++
T Consensus 66 ~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~---------~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~ 135 (296)
T 3e5z_A 66 HPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWES---------IADSFEGKKLNSPNDVCLAPDGSLWFSDPTY 135 (296)
T ss_dssp SSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEE---------EECEETTEECCCCCCEEECTTSCEEEEECSH
T ss_pred CCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEE---------EeeccCCCCCCCCCCEEECCCCCEEEECCcc
Confidence 4566789999999 77788888777899999997662110 000011111123578999999998887
Q ss_pred ecC-------------CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCc
Q 011709 214 GGK-------------DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT 280 (479)
Q Consensus 214 ~s~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 280 (479)
|+. .+.|..++.. +. ...+..+...
T Consensus 136 g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-----------------------------------------~~~~~~~~~~ 173 (296)
T 3e5z_A 136 GIDKPEEGYGGEMELPGRWVFRLAPD-GT-----------------------------------------LSAPIRDRVK 173 (296)
T ss_dssp HHHCGGGSSCCCCCSSSCEEEEECTT-SC-----------------------------------------EEEEECCCSS
T ss_pred ccccccccccccccCCCcEEEEECCC-CC-----------------------------------------EEEeecCCCC
Confidence 331 2344444432 10 1223345556
Q ss_pred eEEEEEeeCCCcEEEEEecCCeEEEEeCC-CCCC-CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCC
Q 011709 281 VEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~ 358 (479)
.+.++|+|++. .+++.+.++.|.+||+. ++.. .....+..+...+..+++++ +++++++. ++.|.+||..
T Consensus 174 ~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~---- 245 (296)
T 3e5z_A 174 PNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPD---- 245 (296)
T ss_dssp EEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTT----
T ss_pred CccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCC----
Confidence 78999999994 55888888999999997 4441 00222233556677899999 88876666 8899999986
Q ss_pred CCCCCceeeecCCCCcEEEEEE-ecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 359 NGVGSPINKFEGHSAAVLCVQW-SPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~l~~-~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++.+..+..+.. +++++| .|+++.|+ .++.++ +.-+++.+
T Consensus 246 ---g~~~~~~~~~~~-~~~~~f~~~d~~~L~-v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 246 ---GDELGRVLTPQT-TSNLCFGGPEGRTLY-MTVSTE-FWSIETNV 286 (296)
T ss_dssp ---SCEEEEEECSSC-CCEEEEESTTSCEEE-EEETTE-EEEEECSC
T ss_pred ---CCEEEEEECCCC-ceeEEEECCCCCEEE-EEcCCe-EEEEEccc
Confidence 467777877777 999999 58888655 555453 44455544
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.32 E-value=1.9e-10 Score=106.56 Aligned_cols=209 Identities=10% Similarity=0.095 Sum_probs=138.0
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCC-
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD- 217 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~d- 217 (479)
+...+..+.+.+++++++++...+ .|.+||.. +........ ...+.....+.+++++++|+++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~~~-~l~~~d~~-g~~~~~~~~--------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 138 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADMRL-GLLVVQTD-GTFEEIAKK--------DSEGRRMQGCNDCAFDYEGNLWITAPAGE 138 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETTT-EEEEEETT-SCEEECCSB--------CTTSCBCBCCCEEEECTTSCEEEEECBCB
T ss_pred CCCCCceEEEecCCCcEEEEECCC-CEEEEeCC-CCEEEEEec--------cCCCccccCCcCEEECCCCCEEEEecCcc
Confidence 446789999998427666665544 79999987 521110000 0001111236899999999877776554
Q ss_pred --------------CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEE
Q 011709 218 --------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (479)
Q Consensus 218 --------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (479)
+.|..+|.. +.. ..+..+......
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~-----------------------------------------~~~~~~~~~~~~ 176 (314)
T 1pjx_A 139 VAPADYTRSMQEKFGSIYCFTTD-GQM-----------------------------------------IQVDTAFQFPNG 176 (314)
T ss_dssp CTTSCCCBTTSSSCEEEEEECTT-SCE-----------------------------------------EEEEEEESSEEE
T ss_pred cccccccccccCCCCeEEEECCC-CCE-----------------------------------------EEeccCCCCcce
Confidence 455555543 110 111122334678
Q ss_pred EEEe----eCCCcEEEEEecCCeEEEEeCC-CCCCC---ceeeeccCC-CCeEEEEecCCCCcEEEEEeCCCcEEEEecC
Q 011709 284 VTFC----PSSAQEFCSVGDDSCLILWDAR-VGTSP---VIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (479)
Q Consensus 284 l~~~----~~~~~~l~s~~~dg~i~iwd~~-~~~~~---~~~~~~~~~-~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~ 354 (479)
++|+ +++..++++...++.|.+||+. ++... ....+..+. ..+..+++++ +++++++...++.|.+||.+
T Consensus 177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTT
T ss_pred EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCC
Confidence 9999 9884455666678999999986 33210 112222333 5678999999 88888888889999999988
Q ss_pred CCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCC
Q 011709 355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG 406 (479)
Q Consensus 355 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~ 406 (479)
+ ++.+..+..+...+.+++|+|+++.|+++...++.|..|++...+
T Consensus 256 ~------g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 256 G------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp C------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred C------CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 5 456666666777899999999998777777777899999987643
No 204
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=1.8e-09 Score=100.72 Aligned_cols=228 Identities=9% Similarity=0.032 Sum_probs=140.9
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEE
Q 011709 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL 222 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~v 222 (479)
.....|+|+++.++++...++.|..||..++. . ..+. .. ..+.+++|+++|+++++. .+ .|.+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~------------~-~~~~-~~-~~v~~i~~~~dg~l~v~~-~~-gl~~ 113 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGR------------K-TVHA-LP-FMGSALAKISDSKQLIAS-DD-GLFL 113 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE------------E-EEEE-CS-SCEEEEEEEETTEEEEEE-TT-EEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc------------E-EEEE-CC-CcceEEEEeCCCeEEEEE-CC-CEEE
Confidence 45678999767888888888999999988761 1 1122 22 247899999999877654 34 4999
Q ss_pred EecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec---
Q 011709 223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD--- 299 (479)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--- 299 (479)
||..++........ . .......+++++++|+| .++++...
T Consensus 114 ~d~~~g~~~~~~~~-----------------------------~-------~~~~~~~~~~i~~d~~G-~l~v~~~~~~~ 156 (326)
T 2ghs_A 114 RDTATGVLTLHAEL-----------------------------E-------SDLPGNRSNDGRMHPSG-ALWIGTMGRKA 156 (326)
T ss_dssp EETTTCCEEEEECS-----------------------------S-------TTCTTEEEEEEEECTTS-CEEEEEEETTC
T ss_pred EECCCCcEEEEeeC-----------------------------C-------CCCCCCCCCCEEECCCC-CEEEEeCCCcC
Confidence 99865432110000 0 00012358899999999 55554432
Q ss_pred ---CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEE-EEeCCCcEEEEecC--CC-CCCCCCCceeeecCCC
Q 011709 300 ---DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRR--NL-TSNGVGSPINKFEGHS 372 (479)
Q Consensus 300 ---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~-tgs~dg~I~iwd~~--~~-~~~~~~~~~~~~~~h~ 372 (479)
.+.|..+| +++ ...+..+....+.++|+| +++.|+ +.+.++.|.+||+. .. .. ...+.+..+....
T Consensus 157 ~~~~~~l~~~~--~g~---~~~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~-~~~~~~~~~~~~~ 229 (326)
T 2ghs_A 157 ETGAGSIYHVA--KGK---VTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPT-GKAEVFIDSTGIK 229 (326)
T ss_dssp CTTCEEEEEEE--TTE---EEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBS-SCCEEEEECTTSS
T ss_pred CCCceEEEEEe--CCc---EEEeeCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcc-cCceEEEECCCCC
Confidence 24566666 343 222223334578999999 787654 44557899999986 31 00 0001222333345
Q ss_pred CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCC-CceeEEEe-cCCCeeeecC
Q 011709 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHS-PSSSIKFV-LRESCLVDNN 448 (479)
Q Consensus 373 ~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~-~~~~~~~s-p~~~~l~~~~ 448 (479)
..+..++++++|. ++++...++.|.+||... . ++.....+. .+++++|+ +++..|+.+.
T Consensus 230 ~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g--~--------------~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 230 GGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG--N--------------HIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp SEEEEEEECTTSC-EEEEEETTTEEEEECTTC--C--------------EEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCCCeeEECCCCC-EEEEEeCCCEEEEECCCC--C--------------EEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 5678999999997 565665678899999732 1 111222223 47899998 8877665443
No 205
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.29 E-value=1.3e-09 Score=100.76 Aligned_cols=231 Identities=10% Similarity=0.083 Sum_probs=147.1
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
.+............|+|+...+++++..++.|..|+.. + . ...+..+.. .+.+++++++|+++++
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g------------~-~~~~~~~~~-~~~gl~~d~dG~l~v~ 102 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G------------T-VDVLLDATA-FTNGNAVDAQQRLVHC 102 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S------------C-EEEEEESCS-CEEEEEECTTSCEEEE
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C------------C-EEEEeCCCC-ccceeeECCCCCEEEE
Confidence 33444555677889999444488888889999999873 3 1 223344443 4789999999986666
Q ss_pred ecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC-CCCceEEEEEeeCCCc
Q 011709 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 214 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~ 292 (479)
...++.|.+|+.. +...... ....+ ....++++++.++| .
T Consensus 103 ~~~~~~v~~~~~~-g~~~~~~-------------------------------------~~~~~~~~~~~~~i~~d~dG-~ 143 (305)
T 3dr2_A 103 EHGRRAITRSDAD-GQAHLLV-------------------------------------GRYAGKRLNSPNDLIVARDG-A 143 (305)
T ss_dssp ETTTTEEEEECTT-SCEEEEE-------------------------------------CEETTEECSCCCCEEECTTS-C
T ss_pred ECCCCEEEEECCC-CCEEEEE-------------------------------------eccCCCccCCCCCEEECCCC-C
Confidence 5566889999875 2111000 00011 12346789999998 5
Q ss_pred EEEE----Eec-------------CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC------CcEE
Q 011709 293 EFCS----VGD-------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVR 349 (479)
Q Consensus 293 ~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d------g~I~ 349 (479)
++++ +.. .+.|..+|..+++ ..... .....+.++|+| +++.|+.+... +.|+
T Consensus 144 l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~--~~~~~--~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~ 218 (305)
T 3dr2_A 144 IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP--LQRMA--DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEIT 218 (305)
T ss_dssp EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC--CEEEE--EESSEEEEEECT-TSSEEEEEECCC---CCCEEE
T ss_pred EEEeCcCCCccccccccccccccCCCeEEEEcCCCCc--EEEEe--cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEE
Confidence 6665 332 3568888887766 22222 345678899999 88877777665 7899
Q ss_pred EEecCCCCCCCCCCcee---ee-cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEE
Q 011709 350 MFDRRNLTSNGVGSPIN---KF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (479)
Q Consensus 350 iwd~~~~~~~~~~~~~~---~~-~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 425 (479)
+||+.. .. +. .+ ....+.+..++++++|. ++++ +.+| |.+||... . ++..
T Consensus 219 ~~~~~~------~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~-~~~g-v~~~~~~g--~--------------~~~~ 272 (305)
T 3dr2_A 219 AFAWRD------GA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSS-SGTG-VCVFDSDG--Q--------------LLGH 272 (305)
T ss_dssp EEEEET------TE-EEEEEEEECCSSSCCCSEEECTTSC-EEEC-CSSE-EEEECTTS--C--------------EEEE
T ss_pred EEEecC------CC-ccCCeEEEECCCCCCCeEEECCCCC-EEEe-cCCc-EEEECCCC--C--------------EEEE
Confidence 999875 22 11 11 11234556789999998 5544 4454 99999743 1 1212
Q ss_pred eCCCCCceeEEEecCCCeeeecCC
Q 011709 426 HAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 426 ~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
...+..+..++|+|+++.|+.++.
T Consensus 273 ~~~~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 273 IPTPGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EECSSCCCEEEECTTSCEEEEEET
T ss_pred EECCCceeEEEEeCCCCEEEEEcC
Confidence 222235789999999887777666
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.29 E-value=7e-09 Score=98.40 Aligned_cols=237 Identities=11% Similarity=-0.035 Sum_probs=146.2
Q ss_pred EEEecCCCCcEEEEEe----------CCCcEEEEECCCCCCccccCCCCCCCCcEEEecc------CCCceeeeeecCCC
Q 011709 145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH------QDNAEFALAMCPTE 208 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h------~~~~v~~l~~s~~~ 208 (479)
.+.++| +++.|+.+. .++.|.+||..+... ...+.-. .......+.|+|+|
T Consensus 70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~------------~~~i~~~~~~~~~~g~~p~~~~~spDG 136 (373)
T 2mad_H 70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP------------IADIELPDAPRFDVGPYSWMNANTPNN 136 (373)
T ss_pred CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcE------------EEEEECCCccccccCCCccceEECCCC
Confidence 899999 666666664 357899999987622 2222110 00113589999999
Q ss_pred CcEEEecC--CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCcee-ecCCCCceEEEE
Q 011709 209 PYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI-YNGHEDTVEDVT 285 (479)
Q Consensus 209 ~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~ 285 (479)
++|+.+.. ++.|.++| .++... .. +. .. .++.
T Consensus 137 ~~l~v~n~~~~~~v~viD-~t~~~~----------------------------------------~~~i~-~~---~~~~ 171 (373)
T 2mad_H 137 ADLLFFQFAAGPAVGLVV-QGGSSD----------------------------------------DQLLS-SP---TCYH 171 (373)
T ss_pred CEEEEEecCCCCeEEEEE-CCCCEE----------------------------------------eEEcC-CC---ceEE
Confidence 99998764 57899999 765331 11 11 11 1245
Q ss_pred EeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeec-----cCCCC-eEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 011709 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-----AHDAD-LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 359 (479)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~-v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~ 359 (479)
+.|.+...+++.+.||.+.++|. +++ ...... ....+ .....+.+ ++..++..+.++.+.+.|+....
T Consensus 172 ~~~~~~~~~~~~~~dg~~~~vd~-~g~--~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~v~vid~~~~~-- 245 (373)
T 2mad_H 172 IHPGAPSTFYLLCAQGGLAKTDH-AGG--AAGAGLVGAMLTAAQNLLTQPAQAN-KSGRIVWPVYSGKILQADISAAG-- 245 (373)
T ss_pred EEeCCCceEEEEcCCCCEEEEEC-CCc--EEEEEeccccccCCcceeecceeEe-cCCEEEEEcCCceEEEEeccCCc--
Confidence 66777677888889999999999 766 232111 11122 23356666 44443434478899999997521
Q ss_pred CCCCceeeecC----------CCCcEEEEEEecCCCcEEEEEeC---------CCCEEEEeCCCCCccccCCCCCCCCCC
Q 011709 360 GVGSPINKFEG----------HSAAVLCVQWSPDKSSVFGSSAE---------DGLLNIWDYEKVGKKVEQGPRTTNYPA 420 (479)
Q Consensus 360 ~~~~~~~~~~~----------h~~~v~~l~~~p~~~~llas~s~---------Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 420 (479)
...+..+.. .......++++|++.+++++... ++.|.++|+.+.
T Consensus 246 --~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--------------- 308 (373)
T 2mad_H 246 --ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--------------- 308 (373)
T ss_pred --ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------------
Confidence 111222211 11234457899999887765531 357999999873
Q ss_pred eeEEEeCCCCCceeEEEecCCC-eeeecCCCccccceeEEEEeeccc
Q 011709 421 GLFFQHAGHSPSSSIKFVLRES-CLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 421 ~l~~~~~gh~~~~~~~~sp~~~-~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
+.+-..........++|+||++ .+++++.+ ++.|.+++....
T Consensus 309 ~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~----~~~V~ViD~~t~ 351 (373)
T 2mad_H 309 QTSSQISLGHDVDAISVAQDGGPDLYALSAG----TEVLHIYDAGAG 351 (373)
T ss_pred EEEEEEECCCCcCeEEECCCCCeEEEEEcCC----CCeEEEEECCCC
Confidence 2222222222468999999999 67776644 889999986543
No 207
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.28 E-value=3.8e-10 Score=102.52 Aligned_cols=182 Identities=10% Similarity=0.024 Sum_probs=131.1
Q ss_pred CCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCC-CceEEEE
Q 011709 207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-DTVEDVT 285 (479)
Q Consensus 207 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~ 285 (479)
.++.|++++.|+.|.+||.++++.. ..+..+. ..+.++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~----------------------------------------w~~~~~~~~~~~~~~ 43 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV----------------------------------------WEYPLEKGWECNSVA 43 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE----------------------------------------EEEECCTTCCCCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE----------------------------------------EEeCCCccCCCcCeE
Confidence 3568999999999999998665432 3333333 4678899
Q ss_pred EeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccC-CCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCCCCCCCCCC
Q 011709 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGS 363 (479)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~ 363 (479)
+.|+| ++++ +.++.|..||. +++ .+..+..+ ...+.++.+.| +++++++.+. ++.|..+|.. ++
T Consensus 44 ~~pdG-~ilv--s~~~~V~~~d~-~G~--~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~-------Gk 109 (276)
T 3no2_A 44 ATKAG-EILF--SYSKGAKMITR-DGR--ELWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNMK-------GE 109 (276)
T ss_dssp ECTTS-CEEE--ECBSEEEEECT-TSC--EEEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTT-------SC
T ss_pred ECCCC-CEEE--eCCCCEEEECC-CCC--EEEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeCC-------CC
Confidence 99999 6677 45788999999 677 56666544 35788999999 9999999887 7788888753 56
Q ss_pred ceeeec------CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEE
Q 011709 364 PINKFE------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKF 437 (479)
Q Consensus 364 ~~~~~~------~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~ 437 (479)
.+.++. .+......+++.+++. ++++...++.|..||.. + ++++....+..+.++..
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~-G---------------~~~w~~~~~~~~~~~~~ 172 (276)
T 3no2_A 110 VLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPN-G---------------QLLNSVKLSGTPFSSAF 172 (276)
T ss_dssp EEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTT-S---------------CEEEEEECSSCCCEEEE
T ss_pred EEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCC-C---------------CEEEEEECCCCccceeE
Confidence 665553 2223455678899998 56788889999999987 4 34555554445667777
Q ss_pred ecCCCeeeecCCCccccceeEEEEeec
Q 011709 438 VLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 438 sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.+++..++++.. ++.|..++..
T Consensus 173 ~~~g~~~v~~~~-----~~~v~~~d~~ 194 (276)
T 3no2_A 173 LDNGDCLVACGD-----AHCFVQLNLE 194 (276)
T ss_dssp CTTSCEEEECBT-----TSEEEEECTT
T ss_pred cCCCCEEEEeCC-----CCeEEEEeCc
Confidence 888888887776 5566666543
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.27 E-value=1.3e-09 Score=113.77 Aligned_cols=204 Identities=10% Similarity=0.034 Sum_probs=129.8
Q ss_pred eeEEEecCCCCcEEEEEeCCCc--------------EEEEECCCCCCccccCCCCCCCCcEEEeccCC-CceeeeeecCC
Q 011709 143 VNRIRELPQNTKIVATHTDSPD--------------VLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-NAEFALAMCPT 207 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~~v~~l~~s~~ 207 (479)
+..++|+| + +.|+.++.++. |++|++.++.. .....+..... ..+..+.|+|+
T Consensus 211 ~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~----------~~~lv~~~~~~~~~~~~~~~SpD 278 (741)
T 1yr2_A 211 FSGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS----------ADQPVFATPELPKRGHGASVSSD 278 (741)
T ss_dssp SCCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGG----------GCEEEECCTTCTTCEEEEEECTT
T ss_pred eccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch----------hCEEEeccCCCCeEEEEEEECCC
Confidence 45789999 5 67777666554 88999877621 11223332221 13679999999
Q ss_pred CCcEEEecCCC-----cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceE
Q 011709 208 EPYVLSGGKDK-----SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE 282 (479)
Q Consensus 208 ~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 282 (479)
|++|+..+.++ .|.+||+.++... ....+..+...+.
T Consensus 279 G~~l~~~~~~~~~~~~~l~~~d~~~~~~~--------------------------------------~~~~l~~~~~~~~ 320 (741)
T 1yr2_A 279 GRWVVITSSEGTDPVNTVHVARVTNGKIG--------------------------------------PVTALIPDLKAQW 320 (741)
T ss_dssp SCEEEEEEECTTCSCCEEEEEEEETTEEC--------------------------------------CCEEEECSSSSCE
T ss_pred CCEEEEEEEccCCCcceEEEEECCCCCCc--------------------------------------ccEEecCCCCceE
Confidence 99888777544 8999998653100 0123333444444
Q ss_pred EEEEeeCCCcEEEEEec----CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCC
Q 011709 283 DVTFCPSSAQEFCSVGD----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 358 (479)
Q Consensus 283 ~l~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~ 358 (479)
... +|++.. |+..+. ++.|.+||+.++..........+...+..++|+ ++.++++...|+..+||.+...
T Consensus 321 ~~~-~~dg~~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~-- 394 (741)
T 1yr2_A 321 DFV-DGVGDQ-LWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLD-- 394 (741)
T ss_dssp EEE-EEETTE-EEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETT--
T ss_pred EEE-eccCCE-EEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCC--
Confidence 443 477744 444444 456999999874201233334455556678887 5678899999998888766521
Q ss_pred CCCCCceeeecC-CCCcEEEEEEecCCCcEEEEEeC---CCCEEEEeCCCC
Q 011709 359 NGVGSPINKFEG-HSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKV 405 (479)
Q Consensus 359 ~~~~~~~~~~~~-h~~~v~~l~~~p~~~~llas~s~---Dg~v~iwd~~~~ 405 (479)
+..+..+.. +.+.|..+.++|++..++++.+. .++|.+||+.++
T Consensus 395 ---g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 395 ---GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp ---SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred ---CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 345565654 36678999999998876555443 478999999774
No 209
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.25 E-value=6.3e-10 Score=114.98 Aligned_cols=204 Identities=14% Similarity=0.125 Sum_probs=129.3
Q ss_pred CCCceeEEEecCCCCcEEEEE-----eCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 139 HPGEVNRIRELPQNTKIVATH-----TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
|...+..++|+| ++++||-+ +...+|++||+.++... ...+.+.. ...++|+ ||+.|+.
T Consensus 127 ~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~-----------~~~~~~~k---~~~~~Ws-Dg~~l~y 190 (693)
T 3iuj_A 127 GTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPL-----------ETPLKDVK---FSGISWL-GNEGFFY 190 (693)
T ss_dssp SCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEE-----------EEEEEEEE---SCCCEEE-TTTEEEE
T ss_pred CcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCC-----------ccccCCce---eccEEEe-CCCEEEE
Confidence 455788899999 77777743 23357999999988211 11122111 2578999 9998888
Q ss_pred ecCCCc-------------EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceee--cC-C
Q 011709 214 GGKDKS-------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--NG-H 277 (479)
Q Consensus 214 ~s~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-h 277 (479)
++.+.. |.+|++.+.... ....+ .. |
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~--------------------------------------~~~v~~~~~~~ 232 (693)
T 3iuj_A 191 SSYDKPDGSELSARTDQHKVYFHRLGTAQED--------------------------------------DRLVFGAIPAQ 232 (693)
T ss_dssp EESSCCC-------CCCCEEEEEETTSCGGG--------------------------------------CEEEESCSGGG
T ss_pred EEecCcccccccccCCCcEEEEEECCCCccc--------------------------------------ceEEEecCCCC
Confidence 877743 888888653221 01122 22 3
Q ss_pred CCceEEEEEeeCCCcEEEEEec---CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC---CcEEEE
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGD---DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMF 351 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d---g~I~iw 351 (479)
...+.++.|+|++..++++.+. +..|.++|+.++... ...+..+....... |++.++.+++....+ +.|..+
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~-~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~ 310 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP-LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTV 310 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC-CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc-eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence 4457789999999655565543 358999999876422 23344555555555 555245555555544 579999
Q ss_pred ecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCC--CEEEEeCCC
Q 011709 352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEK 404 (479)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg--~v~iwd~~~ 404 (479)
|+.... ......+..|...+. .|++++.+|+++...++ .|++||+..
T Consensus 311 d~~~~~----~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 311 DAANPG----PAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp ETTSCC----GGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred eCCCCC----ccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 998732 112345666666665 89999998776666665 688888864
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=2.3e-09 Score=98.63 Aligned_cols=199 Identities=11% Similarity=0.053 Sum_probs=131.6
Q ss_pred EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEe-ccCCCceeeeeecCCCCcEEEe
Q 011709 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 136 ~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
.+.+.+.+.++++.+ +++++++. ++.|.+||..++... ...... +.....++.++++|+|+++++.
T Consensus 49 ~~~~~~~~~~i~~~~-dG~l~v~~--~~~l~~~d~~~g~~~----------~~~~~~~~~~~~~~~di~~d~dG~l~~~~ 115 (297)
T 3g4e_A 49 RVTMDAPVSSVALRQ-SGGYVATI--GTKFCALNWKEQSAV----------VLATVDNDKKNNRFNDGKVDPAGRYFAGT 115 (297)
T ss_dssp EEECSSCEEEEEEBT-TSSEEEEE--TTEEEEEETTTTEEE----------EEEECCTTCSSEEEEEEEECTTSCEEEEE
T ss_pred EEeCCCceEEEEECC-CCCEEEEE--CCeEEEEECCCCcEE----------EEEecCCCCCCCCCCCEEECCCCCEEEec
Confidence 345567899999999 66665553 457999998876211 011110 1111236789999999866654
Q ss_pred cCC---------CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEE
Q 011709 215 GKD---------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT 285 (479)
Q Consensus 215 s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 285 (479)
..+ ..-.||.+..... ...+..+....+.++
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~d~~g~----------------------------------------~~~~~~~~~~pngi~ 155 (297)
T 3g4e_A 116 MAEETAPAVLERHQGALYSLFPDHH----------------------------------------VKKYFDQVDISNGLD 155 (297)
T ss_dssp EECCSBTTBCCTTCEEEEEECTTSC----------------------------------------EEEEEEEESBEEEEE
T ss_pred CCcccccccccCCCcEEEEEECCCC----------------------------------------EEEEeeccccccceE
Confidence 322 2234554431100 011222334568999
Q ss_pred EeeCCCcEEEEEecCCeEEEEeCC--CCCCC---ceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 011709 286 FCPSSAQEFCSVGDDSCLILWDAR--VGTSP---VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360 (479)
Q Consensus 286 ~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~ 360 (479)
|+|++..++++.+.++.|.+||+. ++... ....+..+......+++++ ++++.++....+.|.+||..+
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~t----- 229 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVT----- 229 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTT-----
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCC-----
Confidence 999996666777788999999973 44310 1112223445678999999 888888888888999999987
Q ss_pred CCCceeeecCCCCcEEEEEEe-cCCCcEEEEEeCC
Q 011709 361 VGSPINKFEGHSAAVLCVQWS-PDKSSVFGSSAED 394 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~l~~~-p~~~~llas~s~D 394 (479)
++.+..+..+...+++++|. |+++.|+++...+
T Consensus 230 -G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 230 -GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp -CCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred -ceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 67888888887889999998 8888887777654
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.24 E-value=1.6e-08 Score=92.69 Aligned_cols=226 Identities=7% Similarity=-0.019 Sum_probs=150.9
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCc
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS 219 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~ 219 (479)
...+..+.+.+ ++.++++...++.|..||.. +... ...+.... ..+.++++.++|..+++...++.
T Consensus 61 ~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~-----------~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~~~ 126 (300)
T 2qc5_A 61 DAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFT-----------EYPLPQPD-SGPYGITEGLNGDIWFTQLNGDR 126 (300)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE-----------EEECSSTT-CCEEEEEECSTTCEEEEETTTTE
T ss_pred CCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeE-----------EecCCCCC-CCCccceECCCCCEEEEccCCCe
Confidence 35688999988 67777777777889999987 4110 01111122 24789999999987777777889
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
|..+|.. +.... ..+......+.++++.+++ .++++...
T Consensus 127 i~~~~~~-g~~~~---------------------------------------~~~~~~~~~~~~i~~d~~g-~l~v~~~~ 165 (300)
T 2qc5_A 127 IGKLTAD-GTIYE---------------------------------------YDLPNKGSYPAFITLGSDN-ALWFTENQ 165 (300)
T ss_dssp EEEECTT-SCEEE---------------------------------------EECSSTTCCEEEEEECTTS-SEEEEETT
T ss_pred EEEECCC-CCEEE---------------------------------------ccCCCCCCCceeEEECCCC-CEEEEecC
Confidence 9999875 21110 0111123467899999988 56777766
Q ss_pred CCeEEEEeCCCCCCCceee-eccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee-eecCCCCcEEE
Q 011709 300 DSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLC 377 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~ 377 (479)
++.|..+|. ++. .... ...+...+..+++++ +++++++....+.|.+||.. +.... .+..+...+.+
T Consensus 166 ~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~-------g~~~~~~~~~~~~~~~~ 234 (300)
T 2qc5_A 166 NNSIGRITN-TGK--LEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTT-------GEISEYDIPTPNARPHA 234 (300)
T ss_dssp TTEEEEECT-TCC--EEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTT-------CCEEEEECSSTTCCEEE
T ss_pred CCeEEEECC-CCc--EEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcCC-------CcEEEEECCCCCCCceE
Confidence 889999998 554 2222 223445789999999 88887777777889999983 23322 23334567899
Q ss_pred EEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeC-CCCCceeEEEecCCCeeeec
Q 011709 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHSPSSSIKFVLRESCLVDN 447 (479)
Q Consensus 378 l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~-gh~~~~~~~~sp~~~~l~~~ 447 (479)
+++++++. ++++...++.|..||... ... .+... +...+.++++.+++...+++
T Consensus 235 i~~d~~g~-l~v~~~~~~~i~~~~~~g--~~~-------------~~~~~~~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 235 ITAGKNSE-IWFTEWGANQIGRITNDN--TIQ-------------EYQLQTENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp EEECSTTC-EEEEETTTTEEEEECTTS--CEE-------------EEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred EEECCCCC-EEEeccCCCeEEEECCCC--cEE-------------EEECCccCCccceeEeCCCCCEEEEc
Confidence 99999988 676666678999999832 111 11112 23447889999998765554
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.19 E-value=1.4e-09 Score=102.13 Aligned_cols=231 Identities=13% Similarity=0.111 Sum_probs=134.2
Q ss_pred EEEecCCCCcEEEEEe----------CCCcEEEEECCCCCCccccCCCCCCCCcEEEeccC------CCceeeeeecCCC
Q 011709 145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------DNAEFALAMCPTE 208 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~------~~~v~~l~~s~~~ 208 (479)
.+.++| +++.|+.++ .++.|.+||..+. +....+.-.. +..-..++|+|+|
T Consensus 82 ~va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~------------~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 82 NPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTL------------LPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTC------------CEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred cEEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCC------------eEEEEEECCCccccccCCCCceEEEcCCC
Confidence 399999 555555543 3568999999987 3333332111 1124689999999
Q ss_pred CcEEEecC--CCcEEEEecCCCccccccCCccc-----------ccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec
Q 011709 209 PYVLSGGK--DKSVVLWSIQDHITSSATDPATA-----------KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN 275 (479)
Q Consensus 209 ~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (479)
++|+.+.. ++.|.++|+.+............ ...+.++..+....... +.+. +.. . ..+.
T Consensus 149 k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~-g~v~--~~~--~--~~~~ 221 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE-GTPE--ITH--T--EVFH 221 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSS-SCCE--EEE--C--CCCS
T ss_pred CEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCC-CeEE--Eee--c--ceec
Confidence 98887763 68999999998765433221100 01111222222221110 1110 000 0 0010
Q ss_pred CCCCce-EEEEEe-eCCCcEEEEEecCCeEEEEeCCCCCCCceeeec----------cCCCCeEEEEecCCCCcEEEEEe
Q 011709 276 GHEDTV-EDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK----------AHDADLHCVDWNPLDDNLILTGS 343 (479)
Q Consensus 276 ~h~~~v-~~l~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~v~~l~~sp~~~~~l~tgs 343 (479)
.-...+ ....|. ++| .+++ .+.+|.|.+.|+.+.......... -.......++++| +++.++...
T Consensus 222 ~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~ 298 (386)
T 3sjl_D 222 PEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLV 298 (386)
T ss_dssp CTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEE
T ss_pred cccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEe
Confidence 011111 123664 455 4444 566899999999876521221111 0123344577788 676666654
Q ss_pred C----------CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCC-cEEEEEeCCCCEEEEeCCCC
Q 011709 344 A----------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 344 ~----------dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~llas~s~Dg~v~iwd~~~~ 405 (479)
. ...|.++|+.+ .+.+..+.. ...+.+|+++++++ .++++...++.|.++|..++
T Consensus 299 ~~~~~~~hk~~~~~V~viD~~t------~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 299 DQRDEWRHKTASRFVVVLDAKT------GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp EECCTTCTTSCEEEEEEEETTT------CCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred ccccccccCCCCCEEEEEECCC------CeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 2 25799999998 677777763 24788999999996 55655666999999999884
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.18 E-value=1.5e-09 Score=102.01 Aligned_cols=250 Identities=10% Similarity=0.058 Sum_probs=147.5
Q ss_pred CceeEEEecCCCCcEEEEEe--CCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC--
Q 011709 141 GEVNRIRELPQNTKIVATHT--DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-- 216 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~-- 216 (479)
..+..|+++| +++++++.. .++.++||.+.++.. ...... . ....+|.. .+.+++++++++++++-..
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~---~--~~~~~~~~-~p~gv~~d~~g~L~v~D~g~~ 88 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQ---S--GNAIITFD-TVLGIKSDGNGIVWMLDNGNQ 88 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEE-EESCCC---C--SSCCCCCS-CEEEEEECSSSEEEEEECHHH
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCe-ecCCCc---c--cCccccee-EeeEEEEcCCCcEEEEcCCCC
Confidence 5789999999 778888864 234356666543311 100000 0 00112333 4789999999875555433
Q ss_pred ---CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcE
Q 011709 217 ---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE 293 (479)
Q Consensus 217 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 293 (479)
++.|.+||+.++........ . .....+...++++++++++...
T Consensus 89 ~~~~~~i~~~d~~tg~~~~~~~~-----------------------------~-----~~~~~~~~~~~~v~vd~~~g~~ 134 (343)
T 2qe8_A 89 SKSVPKLVAWDTLNNQLSRVIYL-----------------------------P-----PPITLSNSFVNDLAVDLIHNFV 134 (343)
T ss_dssp HTSCCEEEEEETTTTEEEEEEEC-----------------------------C-----TTTSCTTCCCCEEEEETTTTEE
T ss_pred cCCCCeEEEEECCCCeEEEEEEC-----------------------------C-----hhhcccccccceEEEecCCCEE
Confidence 57899999976542111100 0 0000123456899999865466
Q ss_pred EEEEe---cCCeEEEEeCCCCCCCceeeeccC-----------------------------CCCeEEEEecCCCCcEEEE
Q 011709 294 FCSVG---DDSCLILWDARVGTSPVIKVEKAH-----------------------------DADLHCVDWNPLDDNLILT 341 (479)
Q Consensus 294 l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~v~~l~~sp~~~~~l~t 341 (479)
+++.. .++.|.+||+.+++ ....+.+| ...++.|+|+| +++.|+.
T Consensus 135 yvtd~~~~~~~~i~v~d~~~g~--~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~ 211 (343)
T 2qe8_A 135 YISDPAPDDKAALIRVDLQTGL--AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYL 211 (343)
T ss_dssp EEEECCSGGGCEEEEEETTTCC--EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEE
T ss_pred EEEcCccCCCCeEEEEECCCCC--EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEE
Confidence 67766 68899999998766 33333221 12368899999 8888888
Q ss_pred EeCCC-cEEEEecCCCCCCCC--CCcee--eecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC
Q 011709 342 GSADN-SVRMFDRRNLTSNGV--GSPIN--KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 416 (479)
Q Consensus 342 gs~dg-~I~iwd~~~~~~~~~--~~~~~--~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~ 416 (479)
+..++ .|..++......... .+... ...++.+....++++++|. ++++...++.|.+||...+ ..
T Consensus 212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G-~~-------- 281 (343)
T 2qe8_A 212 SPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADR-AY-------- 281 (343)
T ss_dssp EESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTT-EE--------
T ss_pred EeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCC-CE--------
Confidence 87766 555555432110000 00011 1123444667899999987 7888888999999998432 10
Q ss_pred CCCCeeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 417 NYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 417 ~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
..+.....-..+.+++|.+++..+++.+.
T Consensus 282 ----~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 282 ----KLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp ----EEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred ----EEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 11222121123789999999887777664
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.16 E-value=1.9e-08 Score=93.78 Aligned_cols=193 Identities=12% Similarity=0.160 Sum_probs=125.1
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEec----cCCCceeeeeecCCCCcEEE
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG----HQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----h~~~~v~~l~~s~~~~~l~s 213 (479)
.+...|.++.+.| +++++++. .+ .|.+||..++... .+.. .....++.++++|+|+++++
T Consensus 87 ~~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~-------------~~~~~~~~~~~~~~~~i~~d~~G~l~v~ 150 (326)
T 2ghs_A 87 ALPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLT-------------LHAELESDLPGNRSNDGRMHPSGALWIG 150 (326)
T ss_dssp ECSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEE-------------EEECSSTTCTTEEEEEEEECTTSCEEEE
T ss_pred ECCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEE-------------EEeeCCCCCCCCCCCCEEECCCCCEEEE
Confidence 3456799999999 67676654 44 4999998776211 1111 11224789999999986665
Q ss_pred ecCC----CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC
Q 011709 214 GGKD----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (479)
Q Consensus 214 ~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (479)
...+ +...||.+.++.. ..+..+....+.++|+|+
T Consensus 151 ~~~~~~~~~~~~l~~~~~g~~-----------------------------------------~~~~~~~~~~~~i~~s~d 189 (326)
T 2ghs_A 151 TMGRKAETGAGSIYHVAKGKV-----------------------------------------TKLFADISIPNSICFSPD 189 (326)
T ss_dssp EEETTCCTTCEEEEEEETTEE-----------------------------------------EEEEEEESSEEEEEECTT
T ss_pred eCCCcCCCCceEEEEEeCCcE-----------------------------------------EEeeCCCcccCCeEEcCC
Confidence 4321 2233443322111 111112234678999999
Q ss_pred CCcEEEEEecCCeEEEEeCC--CC-CCC---ceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCC
Q 011709 290 SAQEFCSVGDDSCLILWDAR--VG-TSP---VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 363 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~--~~-~~~---~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~ 363 (479)
+..++++.+.++.|.+||+. ++ ... ....+.........+++++ ++++.++...++.|.+||.. ++
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~~-------g~ 261 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-------GN 261 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-------CC
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECCC-------CC
Confidence 95555666678899999986 44 310 1122223345678899999 88887777777899999983 46
Q ss_pred ceeeecCCCCcEEEEEEe-cCCCcEEEEEeCCC
Q 011709 364 PINKFEGHSAAVLCVQWS-PDKSSVFGSSAEDG 395 (479)
Q Consensus 364 ~~~~~~~h~~~v~~l~~~-p~~~~llas~s~Dg 395 (479)
.+..+..+...+++++|+ |++..|+++...++
T Consensus 262 ~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 262 HIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp EEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred EEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 677777777789999998 88887776666553
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.13 E-value=7.5e-09 Score=98.96 Aligned_cols=239 Identities=11% Similarity=0.038 Sum_probs=147.0
Q ss_pred EEEecCCCCcEEEEEe----------CCCcEEEEECCCCCCccccCCCCCCCCcEEEecc--C----CCceeeeeecCCC
Q 011709 145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH--Q----DNAEFALAMCPTE 208 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h--~----~~~v~~l~~s~~~ 208 (479)
.+.++| +++.|+.+. .++.|.++|..+. +....+.-. . +.....+.|+|+|
T Consensus 122 gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~------------~vv~~I~v~g~~r~~~g~~P~~~~~spDG 188 (426)
T 3c75_H 122 HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTF------------LPIADIELPDAPRFLVGTYQWMNALTPDN 188 (426)
T ss_dssp EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTC------------CEEEEEEETTCCCCCBSCCGGGSEECTTS
T ss_pred ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCC------------cEEEEEECCCccccccCCCcceEEEcCCC
Confidence 799999 555555443 3668999999987 333333211 0 1124689999999
Q ss_pred CcEEEecC--CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 209 PYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 209 ~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
++|+.+.. ++.|.+.|+.+.... ..+.-. . +...
T Consensus 189 k~lyV~n~~~~~~VsVID~~t~kvv----------------------------------------~~I~v~-g---~~~~ 224 (426)
T 3c75_H 189 KNLLFYQFSPAPAVGVVDLEGKTFD----------------------------------------RMLDVP-D---CYHI 224 (426)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEE----------------------------------------EEEECC-S---EEEE
T ss_pred CEEEEEecCCCCeEEEEECCCCeEE----------------------------------------EEEEcC-C---ceee
Confidence 99988764 578999999765332 111110 1 1234
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCCCCceee----eccCCCC-eEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCC
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKV----EKAHDAD-LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~-v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~ 361 (479)
.|.+...+++.+.||.+.+.|+.+++ .... +.....+ ...+.|.+ ++..++..+..+.|.+.|+....
T Consensus 225 ~p~g~~~~v~~~~dG~~~~V~~~~~~--v~~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~---- 297 (426)
T 3c75_H 225 FPASPTVFYMNCRDGSLARVDFADGE--TKVTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEG---- 297 (426)
T ss_dssp EEEETTEEEEEETTSSEEEEECCTTC--CEEEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSC----
T ss_pred ccCCCcEEEEEcCCCCEEEEECCCCc--EEEEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCc----
Confidence 55555677778888888888885554 2211 1111111 12356788 66766666788999999986521
Q ss_pred CCceeeec----------CCCCcEEEEEEecCCCcEEEEEeC---------CCCEEEEeCCCCCccccCCCCCCCCCCee
Q 011709 362 GSPINKFE----------GHSAAVLCVQWSPDKSSVFGSSAE---------DGLLNIWDYEKVGKKVEQGPRTTNYPAGL 422 (479)
Q Consensus 362 ~~~~~~~~----------~h~~~v~~l~~~p~~~~llas~s~---------Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l 422 (479)
...+..+. ........++++|++.+++++... ++.|.+.|+.+. + .
T Consensus 298 ~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~-k--------------v 362 (426)
T 3c75_H 298 ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG-E--------------R 362 (426)
T ss_dssp EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC-C--------------E
T ss_pred eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC-e--------------E
Confidence 00111110 011122237899999988776542 357999999884 1 1
Q ss_pred EEEeCCCCCceeEEEecCCC-eeeecCCCccccceeEEEEeeccc
Q 011709 423 FFQHAGHSPSSSIKFVLRES-CLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 423 ~~~~~gh~~~~~~~~sp~~~-~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
+-..........+.|+||++ .++++..+ ++.|.++|....
T Consensus 363 v~~I~vg~~P~gia~spDg~~~lyv~n~~----s~~VsVID~~t~ 403 (426)
T 3c75_H 363 INKIELGHEIDSINVSQDAEPLLYALSAG----TQTLHIYDAATG 403 (426)
T ss_dssp EEEEEEEEEECEEEECCSSSCEEEEEETT----TTEEEEEETTTC
T ss_pred EEEEECCCCcCeEEEccCCCEEEEEEcCC----CCeEEEEECCCC
Confidence 11111112468999999999 77777754 899999987654
No 216
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.13 E-value=3.9e-08 Score=93.00 Aligned_cols=234 Identities=11% Similarity=0.039 Sum_probs=142.3
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEe------ccCCCceeeeeecCCCCcEEEecCC------
Q 011709 150 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT------GHQDNAEFALAMCPTEPYVLSGGKD------ 217 (479)
Q Consensus 150 p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~h~~~~v~~l~~s~~~~~l~s~s~d------ 217 (479)
++...++++|..++.|+|+|+.+..... +...++. ......-..+...|+| .++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p--------~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREP--------KIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGP 163 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSC--------EEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCc--------eeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence 5455567777788999999997653221 2223331 0000113456778999 77766655
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
|.|.+.|..+.......... .+....-+++.|+|++ +.+++.
T Consensus 164 g~v~vlD~~T~~v~~~~~~~-------------------------------------~~~~~~~Yd~~~~p~~-~~mvsS 205 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEID-------------------------------------RGDQYLAYDFWWNLPN-EVLVSS 205 (462)
T ss_dssp CEEEEECTTTCCEEEECCSB-------------------------------------CTTCCCCCCEEEETTT-TEEEEC
T ss_pred CeEEEEECCCCeEEEEEccC-------------------------------------CCCccccceEEECCCC-CEEEEc
Confidence 78999998765432211110 0111223468889998 566666
Q ss_pred e-------------------cCCeEEEEeCCCCCCCceeeeccC-C-CCeEEEE--ecCCCCcEEEEEe------CCCcE
Q 011709 298 G-------------------DDSCLILWDARVGTSPVIKVEKAH-D-ADLHCVD--WNPLDDNLILTGS------ADNSV 348 (479)
Q Consensus 298 ~-------------------~dg~i~iwd~~~~~~~~~~~~~~~-~-~~v~~l~--~sp~~~~~l~tgs------~dg~I 348 (479)
. .+.+|.+||+.+++ .+..+... . .....+. |+| ++.+++.++ .+++|
T Consensus 206 ~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V 282 (462)
T 2ece_A 206 EWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSI 282 (462)
T ss_dssp BCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEE
T ss_pred cCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceE
Confidence 3 37899999999865 45554432 1 2334454 499 888877777 46688
Q ss_pred EEEecCCCCCCCCCCceeee--cC----------------CCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCcccc
Q 011709 349 RMFDRRNLTSNGVGSPINKF--EG----------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE 410 (479)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~--~~----------------h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~ 410 (479)
.+|...... ...+..+ .. -...+..|.++||+++|+++.-..+.|.+||+...+...
T Consensus 283 ~v~~~d~g~----~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~- 357 (462)
T 2ece_A 283 WLWFYEDGK----WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPV- 357 (462)
T ss_dssp EEEEEETTE----EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCE-
T ss_pred EEEEecCCc----eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE-
Confidence 776654300 1111111 00 024578899999999999888889999999997532111
Q ss_pred CCCCCCCCCCeeEEEeCC-C---------C----CceeEEEecCCCeeeecC
Q 011709 411 QGPRTTNYPAGLFFQHAG-H---------S----PSSSIKFVLRESCLVDNN 448 (479)
Q Consensus 411 ~~~~~~~~~~~l~~~~~g-h---------~----~~~~~~~sp~~~~l~~~~ 448 (479)
.+-.+..| . . ....++++|||++|++++
T Consensus 358 ----------lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 358 ----------LTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ----------EEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ----------EEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 11122222 1 1 358899999999998887
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.10 E-value=1.4e-08 Score=97.79 Aligned_cols=192 Identities=9% Similarity=0.080 Sum_probs=127.7
Q ss_pred eeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCC
Q 011709 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (479)
...|+|+++++++++...++.|++||..++... ..... .
T Consensus 133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~----------------------------------------~~~~~-~ 171 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT----------------------------------------TVHPG-F 171 (409)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEETTTTEEE----------------------------------------EEEET-C
T ss_pred ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE----------------------------------------Eeecc-C
Confidence 579999999997777777899999998754321 11111 1
Q ss_pred CceEEEEEeeCCCcEEEEEecCC--eEEEEeCCCCCCCceeee----ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEe
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKVE----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~----~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd 352 (479)
.... ++|++++ ..++++..++ .|.++|...+.. ...+ ......+.+++++| ++..|+.+..++.|+.||
T Consensus 172 ~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~--~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d 246 (409)
T 3hrp_A 172 KGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWA--PTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFN 246 (409)
T ss_dssp CBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTC--EEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEE
T ss_pred CCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCce--eEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEE
Confidence 2233 8999998 5666666655 899999876552 2222 22456678899999 555556677789999999
Q ss_pred cCCCCCCCCCCceeee-----cCCCCcE--EEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEE
Q 011709 353 RRNLTSNGVGSPINKF-----EGHSAAV--LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (479)
Q Consensus 353 ~~~~~~~~~~~~~~~~-----~~h~~~v--~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 425 (479)
... +. ...+ .++...- ..++|+|++..++++...++.|+.||.... . ..+..
T Consensus 247 ~~~------~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~------------~~~~g 305 (409)
T 3hrp_A 247 VKT------QE-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--C------------EWFCG 305 (409)
T ss_dssp TTT------CC-EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--E------------EEEEE
T ss_pred CCC------CC-EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--E------------EEEEe
Confidence 886 22 2222 2222222 399999976668888888899999997642 0 11111
Q ss_pred eC---C----------CCCceeEEEecCCCeeeecC-CCccccceeEEEEe
Q 011709 426 HA---G----------HSPSSSIKFVLRESCLVDNN-HGLSYANKKIKIYC 462 (479)
Q Consensus 426 ~~---g----------h~~~~~~~~sp~~~~l~~~~-~~~~~~d~~i~i~~ 462 (479)
.. | ......++++|++.++++.. . ++.|+.|+
T Consensus 306 ~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~-----~~~I~~~~ 351 (409)
T 3hrp_A 306 SATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK-----GYCLRKLD 351 (409)
T ss_dssp CTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT-----TCEEEEEE
T ss_pred CCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC-----CCEEEEEE
Confidence 10 0 12368899999999777765 5 77888887
No 218
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.05 E-value=1.9e-10 Score=109.30 Aligned_cols=183 Identities=13% Similarity=0.041 Sum_probs=98.5
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccc
Q 011709 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (479)
Q Consensus 152 ~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~ 231 (479)
++..+++++.||.|+.||..++ +....+.. + .+.+..+..++..+++++.||.|+.||..++...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG------------~~~W~~~~--~-~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~ 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG------------SIKWTLKE--D-PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC------------CEEEEEEC--C-CSCCCC-----CCEEECTTTCCEEEC-----CCS
T ss_pred eCCEEEEEcCCCEEEEEECCCC------------CEEEEecC--C-CceecceEcCCCEEEEeCCCCEEEEEECCCCcee
Confidence 4568899999999999999988 44445554 2 3456666677878888889999999999765432
Q ss_pred cccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCC
Q 011709 232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG 311 (479)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 311 (479)
...... . .... ...++ +. .+ ..+++++.|+.|+.||.+++
T Consensus 73 w~~~~~-----------------------------~----~~~~-~~sp~----~~-~~-~~v~~g~~dg~v~a~D~~tG 112 (369)
T 2hz6_A 73 TKLPFT-----------------------------I----PELV-QASPC----RS-SD-GILYMGKKQDIWYVIDLLTG 112 (369)
T ss_dssp EECSCC-----------------------------H----HHHH-TTCSC----C-------CCCCEEEEEEEEECCC--
T ss_pred eeeecc-----------------------------C----cccc-ccCce----Ee-cC-CEEEEEeCCCEEEEEECCCC
Confidence 111100 0 0000 01111 11 12 35677888999999999998
Q ss_pred CCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCC---CcEE
Q 011709 312 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVF 388 (479)
Q Consensus 312 ~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~ll 388 (479)
+ .+..+..+. ...++| ++..+++++.|+.|+.||.++ ++.+..+..+. .....+.++. ..+
T Consensus 113 ~--~~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~t------G~~~W~~~~~~--~~~~~~~~~~~~~~~v- 176 (369)
T 2hz6_A 113 E--KQQTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKT------RELRWNATYFD--YAASLPEDDVDYKMSH- 176 (369)
T ss_dssp ---------------------------EEEEEEEEEEECCCSSS------SSCCCEEEEEE--ECCBCCCCCTTCCCCE-
T ss_pred c--EEEEecCCC----cccccc-cCCEEEEEecCCEEEEEECCC------CCEEEeEeccc--ccCccccCCccccceE-
Confidence 8 444443332 245677 788999999999999999998 66665554221 2223344432 334
Q ss_pred EEEeCCCCEEEEeCCCC
Q 011709 389 GSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 389 as~s~Dg~v~iwd~~~~ 405 (479)
+.++.||.|..||..++
T Consensus 177 ~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 177 FVSNGDGLVVTVDSESG 193 (369)
T ss_dssp EEEETSCEEEEECTTTC
T ss_pred EEECCCCEEEEEECCCC
Confidence 46788999999999884
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.03 E-value=5.9e-08 Score=100.23 Aligned_cols=199 Identities=10% Similarity=0.076 Sum_probs=124.8
Q ss_pred eEEEecCCCCcEEEEEeCCC-------------cEEEEECCCCCCccccCCCCCCCCcEEEec---cCCCceeeeeecCC
Q 011709 144 NRIRELPQNTKIVATHTDSP-------------DVLIWDVEAQPNRHAVLGATNSRPDLILTG---HQDNAEFALAMCPT 207 (479)
Q Consensus 144 ~~l~~~p~~~~~lat~s~dg-------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---h~~~~v~~l~~s~~ 207 (479)
..++|+ +++.|+.++.+. .|++|++.+... .....+.. |.. ...++.|+|+
T Consensus 178 ~~~~Ws--Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~----------~~~~v~~~~~~~~~-~~~~~~~SpD 244 (693)
T 3iuj_A 178 SGISWL--GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE----------DDRLVFGAIPAQHH-RYVGATVTED 244 (693)
T ss_dssp CCCEEE--TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG----------GCEEEESCSGGGCC-SEEEEEECTT
T ss_pred ccEEEe--CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc----------cceEEEecCCCCCe-EEEEEEEcCC
Confidence 567888 455666666653 399999987621 11222322 232 3568999999
Q ss_pred CCcEEEec----CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEE
Q 011709 208 EPYVLSGG----KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (479)
Q Consensus 208 ~~~l~s~s----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (479)
|++|+... .+..|.++|+.++.. ....+..+......
T Consensus 245 g~~l~~~~~~~~~~~~i~~~d~~~~~~---------------------------------------~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 245 DRFLLISAANSTSGNRLYVKDLSQENA---------------------------------------PLLTVQGDLDADVS 285 (693)
T ss_dssp SCEEEEEEESSSSCCEEEEEETTSTTC---------------------------------------CCEEEECSSSSCEE
T ss_pred CCEEEEEEccCCCCcEEEEEECCCCCC---------------------------------------ceEEEeCCCCceEE
Confidence 99775433 235899999865321 01334445555555
Q ss_pred EEEeeCCCcEEEEEecC---CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC-CC--cEEEEecCCCC
Q 011709 284 VTFCPSSAQEFCSVGDD---SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLT 357 (479)
Q Consensus 284 l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg--~I~iwd~~~~~ 357 (479)
. |++++..+++....+ +.|..+|+.++.......+..|...+. .|++ +++.|+.... ++ .|++||+..
T Consensus 286 ~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~-~g~~lv~~~~~~g~~~l~~~d~~g-- 359 (693)
T 3iuj_A 286 L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS-GSGYLFAEYMVDATARVEQFDYEG-- 359 (693)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE-ETTEEEEEEEETTEEEEEEECTTS--
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE-ECCEEEEEEEECCeeEEEEEECCC--
Confidence 4 666665666666554 689999998876312344455666665 8888 6666655554 54 688998874
Q ss_pred CCCCCCceeeec-CCCCcEEEEEEecCCCcEEEEEeCC---CCEEEEeCCCC
Q 011709 358 SNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKV 405 (479)
Q Consensus 358 ~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~llas~s~D---g~v~iwd~~~~ 405 (479)
.....+. ...+.+..+.+++++..++++.+.. +.|..||+..+
T Consensus 360 -----~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 360 -----KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp -----CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred -----CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 3344443 2445677888888988766555432 78999998764
No 220
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.00 E-value=2e-08 Score=94.34 Aligned_cols=273 Identities=12% Similarity=0.081 Sum_probs=162.0
Q ss_pred ecCCCCcEEEEEeC-----CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec-------
Q 011709 148 ELPQNTKIVATHTD-----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG------- 215 (479)
Q Consensus 148 ~~p~~~~~lat~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s------- 215 (479)
..| +++.+..... ++.|.+.|..+. +.+..+..-.. + .++++|+|++|+++.
T Consensus 40 ~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~------------~v~~~I~vG~~-P--~va~spDG~~lyVan~~~~r~~ 103 (386)
T 3sjl_D 40 PAP-DARRVYVNDPAHFAAVTQQFVIDGEAG------------RVIGMIDGGFL-P--NPVVADDGSFIAHASTVFSRIA 103 (386)
T ss_dssp CCC-CTTEEEEEECGGGCSSEEEEEEETTTT------------EEEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETT
T ss_pred cCC-CCCEEEEEcCcccCCCCEEEEEECCCC------------eEEEEEECCCC-C--cEEECCCCCEEEEEcccccccc
Confidence 345 5555555543 679999999887 44445543332 2 499999999887765
Q ss_pred ---CCCcEEEEecCCCccccccCC-----------cccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCce
Q 011709 216 ---KDKSVVLWSIQDHITSSATDP-----------ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV 281 (479)
Q Consensus 216 ---~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 281 (479)
.++.|.+||..+......... ......+..+..+........+.+.+.|..+.+.+..+.-.. .
T Consensus 104 ~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~ 181 (386)
T 3sjl_D 104 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C 181 (386)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E
T ss_pred cCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c
Confidence 367899999998765332211 111223334444443333334566677777776666664221 1
Q ss_pred EEEEEeeCCCcEEEEEecCCeEEEEeCCC-CCCCceeeeccC----CCCe-EEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 282 EDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAH----DADL-HCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 282 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~----~~~v-~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
....|.+...|++.+.||.+.+.++.. ++ .......+ ...+ ....|.+.++++++ .+.+|.|++.|+..
T Consensus 182 --~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~--v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~ 256 (386)
T 3sjl_D 182 --YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT--PEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSS 256 (386)
T ss_dssp --EEEEEEETTEEEEEETTSCEEEEECCSSSC--CEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTT
T ss_pred --ceeecCCCceeEEECCCCCEEEEECCCCCe--EEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCC
Confidence 223455556788889999999999986 44 22211111 1122 12466432666555 55689999999975
Q ss_pred CCCCCCCCceeeec----------CCCCcEEEEEEecCCCcEEEEEeC---------CCCEEEEeCCCCCccccCCCCCC
Q 011709 356 LTSNGVGSPINKFE----------GHSAAVLCVQWSPDKSSVFGSSAE---------DGLLNIWDYEKVGKKVEQGPRTT 416 (479)
Q Consensus 356 ~~~~~~~~~~~~~~----------~h~~~v~~l~~~p~~~~llas~s~---------Dg~v~iwd~~~~~~~~~~~~~~~ 416 (479)
.. ...+..+. ...+....+++++++.+++++-.. ...|.+.|+.+. +..
T Consensus 257 ~~----~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~-kv~------- 324 (386)
T 3sjl_D 257 GD----AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-ERL------- 324 (386)
T ss_dssp SS----CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC-CEE-------
T ss_pred Cc----ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC-eEE-------
Confidence 21 11222221 012234457789999987766432 256999999884 211
Q ss_pred CCCCeeEEEeCCCCCceeEEEecCCC-eeeecCCCccccceeEEEEeeccc
Q 011709 417 NYPAGLFFQHAGHSPSSSIKFVLRES-CLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 417 ~~~~~l~~~~~gh~~~~~~~~sp~~~-~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
....-| ..+.++++++|++ .|+++..+ ++.|.+++....
T Consensus 325 ------~~i~vg-~~~~~lavs~D~~~~ly~tn~~----~~~VsViD~~t~ 364 (386)
T 3sjl_D 325 ------AKFEMG-HEIDSINVSQDEKPLLYALSTG----DKTLYIHDAESG 364 (386)
T ss_dssp ------EEEEEE-EEECEEEECSSSSCEEEEEETT----TTEEEEEETTTC
T ss_pred ------EEEECC-CCcceEEECCCCCeEEEEEcCC----CCeEEEEECCCC
Confidence 111122 2467999999997 66665443 889999987644
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.99 E-value=4.5e-08 Score=92.00 Aligned_cols=230 Identities=10% Similarity=-0.010 Sum_probs=129.3
Q ss_pred EEEecCCCCcEEEEEe----------CCCcEEEEECCCCCCccccCCCCCCCCcEEEecc--C----CCceeeeeecCCC
Q 011709 145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH--Q----DNAEFALAMCPTE 208 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h--~----~~~v~~l~~s~~~ 208 (479)
.+.++| ++..++.+. .+++|.+||..+. +....+..+ . ......++++|+|
T Consensus 69 ~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~------------~vv~~I~v~~~~~~~~g~~P~~ia~SpDG 135 (368)
T 1mda_H 69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTF------------LPIADIELPDAPRFSVGPRVHIIGNCASS 135 (368)
T ss_dssp EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTC------------CEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCC------------CEEEEEECCCccccccCCCcceEEEcCCC
Confidence 799999 555555554 3678999999998 444555432 0 0124689999999
Q ss_pred CcEEEecC--CCcEEE--EecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCC-----CCCc----eeec
Q 011709 209 PYVLSGGK--DKSVVL--WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS-----VGPR----GIYN 275 (479)
Q Consensus 209 ~~l~s~s~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~ 275 (479)
++|+++.. +..|.+ +|+.+ ...............+....+ .. ..++.+...+... .... ..+.
T Consensus 136 k~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~--~~-~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~ 211 (368)
T 1mda_H 136 ACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHY--LG-SCPASLAASDLAAAPAAAGIVGAQCTGAQN 211 (368)
T ss_dssp SCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEE--CC-CCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred CEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEE--EE-cCCCCEEEEECccccccCCeEEEEeeeeee
Confidence 99998864 467888 99876 111100000000000000001 00 0111111111111 0000 0011
Q ss_pred CCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeecc----------CCCCeEEEEecCCCCcEEEEEeC-
Q 011709 276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLDDNLILTGSA- 344 (479)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~l~~sp~~~~~l~tgs~- 344 (479)
-...+. . .+++.. ++..+. +.|.+.|+.......+..... .......++++| ++..++.+..
T Consensus 212 vg~~P~---~-~~~~~~-~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~ 284 (368)
T 1mda_H 212 CSSQAA---Q-ANYPGM-LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVE 284 (368)
T ss_dssp BCSCCE---E-ETTTTE-EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEE
T ss_pred CCCCcc---c-cccCCE-EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEecc
Confidence 112222 3 566644 444445 899999997643212221110 111122268999 7776665532
Q ss_pred --------CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEe-CCCCEEEEeCCCC
Q 011709 345 --------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKV 405 (479)
Q Consensus 345 --------dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s-~Dg~v~iwd~~~~ 405 (479)
++.+.++|+.+ .+.+..+.... ...+++|+|++++++++.. .++.|.++|+.+.
T Consensus 285 ~~~~~~~~~~~~~ViD~~t------~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASV------GQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp CSSCTTSCEEEEEEEESSS------CCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred ccCcccccCCCEEEEECCC------CeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence 23566999998 67777776443 6889999999998888888 6999999999984
No 222
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.94 E-value=4.5e-07 Score=80.56 Aligned_cols=205 Identities=7% Similarity=0.017 Sum_probs=135.5
Q ss_pred eeEEEecCCCc--eeEEEecCCCCcEEEEEeC--CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC
Q 011709 132 KKHKTIIHPGE--VNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 207 (479)
Q Consensus 132 ~~~~~~~h~~~--V~~l~~~p~~~~~lat~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~ 207 (479)
++...+.|... ...+.|++ ++.++++.+. ++.|++.|+.++ +....+.-......-++++.
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg------------~v~~~i~l~~~~fgeGi~~~-- 74 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTG------------KVENIHKMDDSYFGEGLTLL-- 74 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTC------------CEEEEEECCTTCCEEEEEEE--
T ss_pred eEEEEEECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCC------------CEEEEEecCCCcceEEEEEe--
Confidence 36777888865 57999998 4666666553 579999999998 33333321111112345554
Q ss_pred CCcEE-EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 208 EPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 208 ~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
++.|. +.-.++.+.++|..+.... ..+..... ....+
T Consensus 75 g~~lyv~t~~~~~v~viD~~t~~v~----------------------------------------~~i~~g~~--~g~gl 112 (266)
T 2iwa_A 75 NEKLYQVVWLKNIGFIYDRRTLSNI----------------------------------------KNFTHQMK--DGWGL 112 (266)
T ss_dssp TTEEEEEETTCSEEEEEETTTTEEE----------------------------------------EEEECCSS--SCCEE
T ss_pred CCEEEEEEecCCEEEEEECCCCcEE----------------------------------------EEEECCCC--CeEEE
Confidence 44454 4446789999998764332 12211101 12345
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccC--C---CCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCC
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH--D---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~---~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~ 361 (479)
++++..+++ +..++.|.++|..+.+ ........ . ..++.+.|. ++.+.+....++.|.+.|..+
T Consensus 113 t~Dg~~l~v-s~gs~~l~viD~~t~~--v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~t------ 181 (266)
T 2iwa_A 113 ATDGKILYG-SDGTSILYEIDPHTFK--LIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKD------ 181 (266)
T ss_dssp EECSSSEEE-ECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTT------
T ss_pred EECCCEEEE-ECCCCeEEEEECCCCc--EEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCC------
Confidence 667755554 4568899999999877 44444321 1 246788887 465555555688999999998
Q ss_pred CCceeeecCC-------------CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 362 GSPINKFEGH-------------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 362 ~~~~~~~~~h-------------~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++.+..+... ....+.|+|+|++..+|+++...+.|.+.++..
T Consensus 182 g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 182 GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 6777776532 135689999999999999999999999999876
No 223
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.91 E-value=2.7e-06 Score=80.55 Aligned_cols=200 Identities=11% Similarity=0.016 Sum_probs=122.4
Q ss_pred eeEEEecCCCCcEEEEEeC--CCcEEEEECCCCCCccccCCCCCCCCcEE-EeccCCCceeeeeecCCCC-cEEEecCCC
Q 011709 143 VNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPTEP-YVLSGGKDK 218 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~v~~l~~s~~~~-~l~s~s~dg 218 (479)
...+.++| ++++|+++.. ++.|.++| .++. .... +. .. .++.+.|+++ .+++.+.||
T Consensus 127 p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~------------~~~~~i~--~~---~~~~~~~~~~~~~~~~~~dg 187 (373)
T 2mad_H 127 SWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGS------------SDDQLLS--SP---TCYHIHPGAPSTFYLLCAQG 187 (373)
T ss_pred ccceEECC-CCCEEEEEecCCCCeEEEEE-CCCC------------EEeEEcC--CC---ceEEEEeCCCceEEEEcCCC
Confidence 45789999 7777777663 57899999 8762 2222 21 11 1345556653 556677799
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (479)
.+.++|. ++......... ..+.+.........+.+++..+++..
T Consensus 188 ~~~~vd~-~g~~~~~~~~~----------------------------------~~~~~~~p~~~~~~~~~~~~~~~~~~- 231 (373)
T 2mad_H 188 GLAKTDH-AGGAAGAGLVG----------------------------------AMLTAAQNLLTQPAQANKSGRIVWPV- 231 (373)
T ss_pred CEEEEEC-CCcEEEEEecc----------------------------------ccccCCcceeecceeEecCCEEEEEc-
Confidence 9999998 54332100000 00011111123345666664444443
Q ss_pred cCCeEEEEeCCCCCCCceeeecc----------CCCCeEEEEecCCCCcEEEEEeC----------CCcEEEEecCCCCC
Q 011709 299 DDSCLILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLDDNLILTGSA----------DNSVRMFDRRNLTS 358 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~l~~sp~~~~~l~tgs~----------dg~I~iwd~~~~~~ 358 (479)
..+.+.+.|+.......+..+.. .......++++| ++..++++.. ++.|.++|+.+
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t--- 307 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--- 307 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-CCCEEEEEeccCCcccccCCCCeEEEEECCC---
Confidence 67899999997654212222110 123344578899 7777776543 35799999988
Q ss_pred CCCCCceeeecCCCCcEEEEEEecCCCcEEEEEe-CCCCEEEEeCCCC
Q 011709 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKV 405 (479)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s-~Dg~v~iwd~~~~ 405 (479)
.+.+.++.. .....+++|+|+++++++++. .++.|.++|+.+.
T Consensus 308 ---~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 308 ---GQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred ---CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 677777753 346889999999994455555 5899999999884
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.88 E-value=2.3e-07 Score=85.53 Aligned_cols=192 Identities=9% Similarity=0.041 Sum_probs=122.5
Q ss_pred eeeeeecCCCC-cEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC
Q 011709 199 EFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (479)
Q Consensus 199 v~~l~~s~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (479)
..+..|+|+++ .++++..++.|..|+... .. ..+..+
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~~-----------------------------------------~~~~~~ 84 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWREDG-TV-----------------------------------------DVLLDA 84 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTS-CE-----------------------------------------EEEEES
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCCC-CE-----------------------------------------EEEeCC
Confidence 57899999998 667777889999998732 11 223334
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeec---c-CCCCeEEEEecCCCCcEEEE----EeC-----
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK---A-HDADLHCVDWNPLDDNLILT----GSA----- 344 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~-~~~~v~~l~~sp~~~~~l~t----gs~----- 344 (479)
...+..++++++| +++++...++.|.+||.. ++ ...... + ....++.++++| ++++++| |..
T Consensus 85 ~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~--~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~ 159 (305)
T 3dr2_A 85 TAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQ--AHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQG 159 (305)
T ss_dssp CSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC--EEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGS
T ss_pred CCccceeeECCCC-CEEEEECCCCEEEEECCC-CC--EEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccc
Confidence 5668999999998 566665566889999986 44 221111 1 123467899999 8888886 432
Q ss_pred --------CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeC-----CCCEEEEeCCCCCccccC
Q 011709 345 --------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-----DGLLNIWDYEKVGKKVEQ 411 (479)
Q Consensus 345 --------dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~-----Dg~v~iwd~~~~~~~~~~ 411 (479)
.+.|..||... ++... +. .....+.++|+|+++.++++.+. ++.|.+||+...+ ...
T Consensus 160 ~~~~~~~~~~~v~~~d~~~------g~~~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~ 229 (305)
T 3dr2_A 160 CPADPELAHHSVYRLPPDG------SPLQR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHD 229 (305)
T ss_dssp CCCCCSSSCEEEEEECSSS------CCCEE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EEE
T ss_pred cccccccCCCeEEEEcCCC------CcEEE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccC
Confidence 25677777755 33322 22 44567899999999976555443 2789999987532 100
Q ss_pred CCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 412 GPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 412 ~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
...+..........+++.++|...+++ . ++ |.+|+.
T Consensus 230 ---------~~~~~~~~~~~pdgi~~d~~G~lwv~~-~-----~g-v~~~~~ 265 (305)
T 3dr2_A 230 ---------RRHFASVPDGLPDGFCVDRGGWLWSSS-G-----TG-VCVFDS 265 (305)
T ss_dssp ---------EEEEECCSSSCCCSEEECTTSCEEECC-S-----SE-EEEECT
T ss_pred ---------CeEEEECCCCCCCeEEECCCCCEEEec-C-----Cc-EEEECC
Confidence 112222222335678899999865555 3 33 666654
No 225
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.80 E-value=1.9e-05 Score=70.89 Aligned_cols=199 Identities=6% Similarity=-0.001 Sum_probs=124.6
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE-EecCCCcE
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSV 220 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~-s~s~dg~i 220 (479)
.+..+++.+.++.++++-..++.|..++..... .......... ...++++++++..|+ +-...+.|
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~------------~~~~~~~~~~-~p~~ia~d~~~~~lyv~d~~~~~I 103 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE------------PTTIIRQDLG-SPEGIALDHLGRTIFWTDSQLDRI 103 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC------------CEEEECTTCC-CEEEEEEETTTTEEEEEETTTTEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCC------------cEEEEECCCC-CccEEEEEecCCeEEEEECCCCEE
Confidence 467899999677777787788899999987651 1112222112 357999999765554 44557889
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec-
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD- 299 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~- 299 (479)
.+++++..... ............++++|++..++++...
T Consensus 104 ~~~~~~g~~~~----------------------------------------~~~~~~~~~P~~i~vd~~~g~lyv~~~~~ 143 (267)
T 1npe_A 104 EVAKMDGTQRR----------------------------------------VLFDTGLVNPRGIVTDPVRGNLYWTDWNR 143 (267)
T ss_dssp EEEETTSCSCE----------------------------------------EEECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred EEEEcCCCCEE----------------------------------------EEEECCCCCccEEEEeeCCCEEEEEECCC
Confidence 99988632110 0111112346899999976465555543
Q ss_pred -CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCc-EEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEE
Q 011709 300 -DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC 377 (479)
Q Consensus 300 -dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 377 (479)
.+.|..+++..... .............++++| ++. ++++-...+.|.++|+.. ......+.. ......
T Consensus 144 ~~~~I~~~~~dg~~~--~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g------~~~~~~~~~-~~~P~g 213 (267)
T 1npe_A 144 DNPKIETSHMDGTNR--RILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQ------PGRRKVLEG-LQYPFA 213 (267)
T ss_dssp SSCEEEEEETTSCCC--EEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTE------EEEEEEEEC-CCSEEE
T ss_pred CCcEEEEEecCCCCc--EEEEECCCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCC------CceEEEecC-CCCceE
Confidence 46888888864331 111112334678999999 554 445555578999999875 222222222 233456
Q ss_pred EEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 378 l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
++.. +.+++++....+.|.++|...+
T Consensus 214 i~~d--~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 214 VTSY--GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp EEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred EEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence 7654 4557777767789999998763
No 226
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.79 E-value=1.6e-06 Score=76.04 Aligned_cols=191 Identities=11% Similarity=0.136 Sum_probs=122.2
Q ss_pred eeEEEecCCCce--eEEEecCCCCcEEEEEeCCC--cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC
Q 011709 132 KKHKTIIHPGEV--NRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 207 (479)
Q Consensus 132 ~~~~~~~h~~~V--~~l~~~p~~~~~lat~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~ 207 (479)
++++.+.|...- ..+.|+ ++.++.+.+.+| .|+++|+.++ +....+..... .++....++
T Consensus 32 ~vv~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tg------------kv~~~~~l~~~--~FgeGit~~ 95 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESG------------KTLQQIELGKR--YFGEGISDW 95 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTC------------CEEEEEECCTT--CCEEEEEEE
T ss_pred EEEEEecCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCC------------cEEEEEecCCc--cceeEEEEe
Confidence 367778887655 778887 457777777766 8999999998 33333333222 334333334
Q ss_pred CCcEEEec-CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 208 EPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 208 ~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
++.|.... .++.+.++|..+.... ..+.-.. ....+
T Consensus 96 g~~ly~ltw~~~~v~v~D~~t~~~~----------------------------------------~ti~~~~---eG~gl 132 (262)
T 3nol_A 96 KDKIVGLTWKNGLGFVWNIRNLRQV----------------------------------------RSFNYDG---EGWGL 132 (262)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEE----------------------------------------EEEECSS---CCCCE
T ss_pred CCEEEEEEeeCCEEEEEECccCcEE----------------------------------------EEEECCC---CceEE
Confidence 55555444 5889999999764432 2222111 22344
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccC----C-CCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCC
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH----D-ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~-~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~ 361 (479)
++++.. |+.+..++.|.++|..+.+ .+...... . ..++.+.|. ++.+.+..-.+..|.+.|.++
T Consensus 133 t~dg~~-L~~SdGs~~i~~iDp~T~~--v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~t------ 201 (262)
T 3nol_A 133 THNDQY-LIMSDGTPVLRFLDPESLT--PVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPET------ 201 (262)
T ss_dssp EECSSC-EEECCSSSEEEEECTTTCS--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTT------
T ss_pred ecCCCE-EEEECCCCeEEEEcCCCCe--EEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCC------
Confidence 466744 4444557889999999887 45444321 1 345667876 566665555688999999998
Q ss_pred CCceeeecCC------------CCcEEEEEEecCCCcEEEEEe
Q 011709 362 GSPINKFEGH------------SAAVLCVQWSPDKSSVFGSSA 392 (479)
Q Consensus 362 ~~~~~~~~~h------------~~~v~~l~~~p~~~~llas~s 392 (479)
++.+..+... ....+.|+|+|++..+|++|=
T Consensus 202 G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 202 GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 6666665431 235689999999998887774
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.78 E-value=4.7e-07 Score=85.72 Aligned_cols=168 Identities=15% Similarity=0.156 Sum_probs=110.0
Q ss_pred eEEEEEeeCCCcEEEEEecC------CeEEEEeCCCCCCCceeeeccC--C-CCeEEEEecCCCCcEEEEEe--------
Q 011709 281 VEDVTFCPSSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAH--D-ADLHCVDWNPLDDNLILTGS-------- 343 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~--~-~~v~~l~~sp~~~~~l~tgs-------- 343 (479)
-..+...|++ +++++..+ |.|.++|..+.+ ++...... . .--..+.|+| +++.+++..
T Consensus 140 Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~--v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~ 214 (462)
T 2ece_A 140 LHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFE--PLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIE 214 (462)
T ss_dssp EEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCC--EEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHT
T ss_pred ccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCe--EEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccc
Confidence 4566778888 66666655 789999999988 56655422 1 2234588899 888888875
Q ss_pred -----------CCCcEEEEecCCCCCCCCCCceeeecCC--CCcEEEEEE--ecCCCcEEEEEe-----CCCCEEEEeCC
Q 011709 344 -----------ADNSVRMFDRRNLTSNGVGSPINKFEGH--SAAVLCVQW--SPDKSSVFGSSA-----EDGLLNIWDYE 403 (479)
Q Consensus 344 -----------~dg~I~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~p~~~~llas~s-----~Dg~v~iwd~~ 403 (479)
.+.+|.+||+.. ++.+.++... ......+.| +|++++.++++- .+++|.+|...
T Consensus 215 ~g~~~~~~~~~~~d~V~v~D~~~------~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d 288 (462)
T 2ece_A 215 DGLKLEHLKDRYGNRIHFWDLRK------RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE 288 (462)
T ss_dssp TCCCTTTHHHHSCCEEEEEETTT------TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE
T ss_pred cccchhhhhhccCCEEEEEECCC------CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec
Confidence 368999999987 5666666542 123445656 999998887777 78899887765
Q ss_pred CCCccccCCC--CCC----CCCCeeEEEeCC-CCCceeEEEecCCCeeeecCCCccccceeEEEEeec
Q 011709 404 KVGKKVEQGP--RTT----NYPAGLFFQHAG-HSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 404 ~~~~~~~~~~--~~~----~~~~~l~~~~~g-h~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
. +....... ... ...+.+.-...+ ......+.++||+++|..+..+ .+.|.+|++.
T Consensus 289 ~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg----~d~VavfdV~ 351 (462)
T 2ece_A 289 D-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG----IGEVRQYDIS 351 (462)
T ss_dssp T-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT----TTEEEEEECS
T ss_pred C-CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC----CCEEEEEEec
Confidence 4 22110000 000 000000000000 2346899999999999999887 8999999874
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.77 E-value=1.9e-05 Score=70.98 Aligned_cols=156 Identities=7% Similarity=-0.066 Sum_probs=103.7
Q ss_pred eeeeeecCCCCcEE-EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC
Q 011709 199 EFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (479)
Q Consensus 199 v~~l~~s~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (479)
..+++|+++++.|+ +-..++.|..+++...... ......
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~----------------------------------------~~~~~~ 77 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT----------------------------------------TIIRQD 77 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE----------------------------------------EEECTT
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE----------------------------------------EEEECC
Confidence 57999999766554 5556789999998643210 111112
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC---CCcEEEEecC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRR 354 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~---dg~I~iwd~~ 354 (479)
......+++++++..++++-...+.|.++|+.... ..............++++| ++..|+.+.. .+.|..+++.
T Consensus 78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETT
T ss_pred CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC--EEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecC
Confidence 24578999999765777777778899999987543 1222222224678999999 5555444443 3688888876
Q ss_pred CCCCCCCCCceeee-cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 355 NLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 355 ~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
. .....+ .........++++|++..|+++....+.|.++|+..
T Consensus 155 g-------~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 155 G-------TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp S-------CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred C-------CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence 4 222222 122346789999999887888888889999999874
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.76 E-value=1.3e-07 Score=88.89 Aligned_cols=260 Identities=9% Similarity=-0.036 Sum_probs=144.5
Q ss_pred cEEEEEeCCC----cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec----------CCCc
Q 011709 154 KIVATHTDSP----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------KDKS 219 (479)
Q Consensus 154 ~~lat~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s----------~dg~ 219 (479)
..+++-..++ +|.+.|..+. +.+..+..-.. + .+.++|++++++++. .++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~------------~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~ 97 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCG------------VTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDY 97 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTT------------EEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred eEEEECCccCCccceEEEEECCCC------------eEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCE
Confidence 3444544444 7889999887 44555544333 3 799999999888875 4789
Q ss_pred EEEEecCCCccccccCC-----------cccccCCCCCceeecCCCCCCCCCCC--CCCCCCCCceeecCCCCceEEEEE
Q 011709 220 VVLWSIQDHITSSATDP-----------ATAKSAGSSGSIIKQSPKPGDGNDKA--ADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
|.+||+.+......... ......+..+..+..........+.+ +|..+ +..+.- ... +.+
T Consensus 98 VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~---~~~ 170 (368)
T 1mda_H 98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC---FHI 170 (368)
T ss_dssp EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC---CCC
T ss_pred EEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc---eEE
Confidence 99999998765433211 11112222333333222111223333 44443 222211 011 223
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCC-----CCCCcee----eeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARV-----GTSPVIK----VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~----~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~ 357 (479)
.|++...+++.+.||.+.+.|+.+ ++ ... .......+. . .+ ++..++..+. +.|.+.|+....
T Consensus 171 ~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~--v~~~~t~~i~vg~~P~---~-~~-~~~~~~~vs~-~~V~viD~~~~~ 242 (368)
T 1mda_H 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGI--VGAQCTGAQNCSSQAA---Q-AN-YPGMLVWAVA-SSILQGDIPAAG 242 (368)
T ss_dssp EEEETTEEECCCCTTSCEEEECCSSCCCCEE--CCCCSCTTSCBCSCCE---E-ET-TTTEEEECBS-SCCEEEECCSSC
T ss_pred ccCCCeEEEEEcCCCCEEEEECccccccCCe--EEEEeeeeeeCCCCcc---c-cc-cCCEEEEEcC-CEEEEEECCCCc
Confidence 566666777888899998899886 32 110 111122333 3 55 4445555555 999999986421
Q ss_pred CCCCCCceeeecC-------C---CCcEEEEEEecCCCcEEEEEe---C-----CCCEEEEeCCCCCccccCCCCCCCCC
Q 011709 358 SNGVGSPINKFEG-------H---SAAVLCVQWSPDKSSVFGSSA---E-----DGLLNIWDYEKVGKKVEQGPRTTNYP 419 (479)
Q Consensus 358 ~~~~~~~~~~~~~-------h---~~~v~~l~~~p~~~~llas~s---~-----Dg~v~iwd~~~~~~~~~~~~~~~~~~ 419 (479)
...+..+.. + ......++|+|++.+++++.. . ++.+.++|+.+. +....
T Consensus 243 ----~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~-~vv~~-------- 309 (368)
T 1mda_H 243 ----ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-QTSGP-------- 309 (368)
T ss_dssp ----CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-CEEEC--------
T ss_pred ----ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC-eEEEE--------
Confidence 112222211 1 111122789999998876644 2 234669999884 22211
Q ss_pred CeeEEEeCCCCCceeEEEecCCCeeeecCC-CccccceeEEEEeeccc
Q 011709 420 AGLFFQHAGHSPSSSIKFVLRESCLVDNNH-GLSYANKKIKIYCHLEA 466 (479)
Q Consensus 420 ~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~-~~~~~d~~i~i~~~~~~ 466 (479)
.........++|+||++.++.+.. + ++.|.+++....
T Consensus 310 ------i~vg~~p~gi~~s~Dg~~l~va~~~~----~~~VsVID~~t~ 347 (368)
T 1mda_H 310 ------ISNGHDSDAIIAAQDGASDNYANSAG----TEVLDIYDAASD 347 (368)
T ss_dssp ------CEEEEEECEEEECCSSSCEEEEEETT----TTEEEEEESSSC
T ss_pred ------EECCCCcceEEECCCCCEEEEEccCC----CCeEEEEECCCC
Confidence 111124689999999985444433 3 889999986654
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.70 E-value=1.7e-06 Score=88.81 Aligned_cols=268 Identities=12% Similarity=0.067 Sum_probs=151.5
Q ss_pred cEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCC---------ce-eeeeecCCCCcEEEecCCCcEEEE
Q 011709 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN---------AE-FALAMCPTEPYVLSGGKDKSVVLW 223 (479)
Q Consensus 154 ~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------~v-~~l~~s~~~~~l~s~s~dg~i~vw 223 (479)
..|+.++.++.|+-+|..+++.. ..+..+... .+ .++.. .+..++.++.|+.|..+
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~------------W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~Al 136 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLI------------WKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAI 136 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEE------------EEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcee------------EEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEE
Confidence 36666777888999999888433 222221110 00 11222 35678888899999999
Q ss_pred ecCCCccccccCCc-c-----cccCCC--CCceeecCCCC----CCCCCCCCCCCCCCCceeecC---------------
Q 011709 224 SIQDHITSSATDPA-T-----AKSAGS--SGSIIKQSPKP----GDGNDKAADGPSVGPRGIYNG--------------- 276 (479)
Q Consensus 224 d~~~~~~~~~~~~~-~-----~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--------------- 276 (479)
|..++...-..... . ...... ....+...... ..+.+..+|..+++.+..+..
T Consensus 137 Da~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~ 216 (689)
T 1yiq_A 137 DAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGME 216 (689)
T ss_dssp ETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHH
T ss_pred ECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccc
Confidence 99888654222211 0 000000 01112111111 234555566666655444321
Q ss_pred ----------------CCCceEEEEEeeCCCcEEEEEecCCe-------------------EEEEeCCCCCCCceeeecc
Q 011709 277 ----------------HEDTVEDVTFCPSSAQEFCSVGDDSC-------------------LILWDARVGTSPVIKVEKA 321 (479)
Q Consensus 277 ----------------h~~~v~~l~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~ 321 (479)
+......+++.|+. .+++.++.++. |..+|.++++ .+..+..
T Consensus 217 ~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~--~~W~~~~ 293 (689)
T 1yiq_A 217 IAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE--YVWHYQT 293 (689)
T ss_dssp HHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC--EEEEEES
T ss_pred ccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc--eeEeeec
Confidence 01111256788877 56777777764 9999999998 4443332
Q ss_pred --CC-------CCeEEEEecCCCCc---EEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC-----------------
Q 011709 322 --HD-------ADLHCVDWNPLDDN---LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS----------------- 372 (479)
Q Consensus 322 --~~-------~~v~~l~~sp~~~~---~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~----------------- 372 (479)
|. ..+....... ++. +++.++.+|.++++|.++ ++++.......
T Consensus 294 ~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~l~~~~~~~~~w~~~~~~~~~~pi~~ 366 (689)
T 1yiq_A 294 TPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRAT------GELLSAKGIVPQSWTKGMDMKTGRPILD 366 (689)
T ss_dssp STTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTT------CCEEEEEESSCCSSEEEEETTTTEEEEC
T ss_pred CCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCC------CCEeccccccccccccccCccCCCcccc
Confidence 21 1222222222 444 789999999999999988 56553221100
Q ss_pred -----------C-----------cEEEEEEecCCCcEEEEEeC-------------------------------------
Q 011709 373 -----------A-----------AVLCVQWSPDKSSVFGSSAE------------------------------------- 393 (479)
Q Consensus 373 -----------~-----------~v~~l~~~p~~~~llas~s~------------------------------------- 393 (479)
. .-..++|+|+...+ .+...
T Consensus 367 ~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~-yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 445 (689)
T 1yiq_A 367 EENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLV-YIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEG 445 (689)
T ss_dssp HHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEE-EEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHH
T ss_pred hhhccccCCCCeeEeCCCcccccCCCcceECCCCCEE-EEeccccceeeeeccccccccccccccccCccccccCccccc
Confidence 0 01237889987744 44432
Q ss_pred --------CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 394 --------DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 394 --------Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
+|.|..||+.++ ++++.+..+.......+...+..++.++. ||.++.|+...
T Consensus 446 ~~~~~~~~~g~l~A~D~~tG---------------~~~W~~~~~~~~~~g~~~tagglvf~gt~-----dg~l~a~D~~t 505 (689)
T 1yiq_A 446 LLEMAKSWSGKLIAWDPVKQ---------------QAAWEVPYVTIFNGGTLSTAGNLVFEGSA-----DGRVIAYAADT 505 (689)
T ss_dssp HHHHHTTCEEEEEEEETTTT---------------EEEEEEEESSSCCCCEEEETTTEEEEECT-----TSEEEEEETTT
T ss_pred CCCCCCCcceeEEEEECCCC---------------CeEeEccCCCCccCccceECCCEEEEECC-----CCcEEEEECCC
Confidence 356777777764 45555555555445566777778888777 89999998654
Q ss_pred c
Q 011709 466 A 466 (479)
Q Consensus 466 ~ 466 (479)
-
T Consensus 506 G 506 (689)
T 1yiq_A 506 G 506 (689)
T ss_dssp C
T ss_pred C
Confidence 3
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.69 E-value=6.2e-07 Score=84.11 Aligned_cols=231 Identities=8% Similarity=0.014 Sum_probs=126.1
Q ss_pred cCCCceeEEEecCCCCcEEEEEeC-----CCcEEEEECCCCCCccccCCCCCCCCcEEEecc-----CCCceeeeeecCC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTD-----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-----QDNAEFALAMCPT 207 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~~v~~l~~s~~ 207 (479)
.|-..+..+++.+ +++++++-+. ++.|.+||+.++. ....+..+ .......++++++
T Consensus 64 ~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~------------~~~~~~~~~~~~~~~~~~~~v~vd~~ 130 (343)
T 2qe8_A 64 ITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQ------------LSRVIYLPPPITLSNSFVNDLAVDLI 130 (343)
T ss_dssp CCCSCEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTE------------EEEEEECCTTTSCTTCCCCEEEEETT
T ss_pred cceeEeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCe------------EEEEEECChhhcccccccceEEEecC
Confidence 4556899999999 6777766544 5789999998772 22222211 1123578999986
Q ss_pred CCcE-EEec---CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEE
Q 011709 208 EPYV-LSGG---KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (479)
Q Consensus 208 ~~~l-~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (479)
+..+ ++.. .++.|.+||+.++................ ..... .. ..+...+ ... .+......++.
T Consensus 131 ~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~-~~~~~--~g---~~~~~~~-~~g----~~~~~~~~~~g 199 (343)
T 2qe8_A 131 HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED-IDLVI--DG---VPVQIGQ-PDG----TVIRPHLGVNG 199 (343)
T ss_dssp TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS-CCCEE--TT---EECBEEC-TTS----CEECCCCCEEE
T ss_pred CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc-cceeE--CC---EEEEecc-CCC----ceeceecccce
Confidence 5544 5544 67899999997654322111000000000 00000 00 0000000 000 00001134789
Q ss_pred EEEeeCCCcEEEEEecCC-eEEEEeCC---CCCC---Ccee--eeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecC
Q 011709 284 VTFCPSSAQEFCSVGDDS-CLILWDAR---VGTS---PVIK--VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (479)
Q Consensus 284 l~~~~~~~~~l~s~~~dg-~i~iwd~~---~~~~---~~~~--~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~ 354 (479)
++|+|++. .|+.+..++ .|..+|.. .+.. .... ...++......+++++ +++++++...++.|.+||..
T Consensus 200 ia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~ 277 (343)
T 2qe8_A 200 IVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSA 277 (343)
T ss_dssp EEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETT
T ss_pred eEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEECC
Confidence 99999994 555555444 56555532 1110 0000 1113344566799999 89999999999999999984
Q ss_pred CCCCCCCCCceeeecC-CCCcEEEEEEecCCCcEEEEEeCCCCEEEEe
Q 011709 355 NLTSNGVGSPINKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 355 ~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd 401 (479)
. ++....... +...+.+++|.+++. ++++.+..+.+.+|.
T Consensus 278 ~------G~~~~~~~~~~~~~p~~va~~~~g~-l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 278 D------RAYKLLVTDEKLSWTDSFNFGSDGY-LYFDCNQLHHSAPLN 318 (343)
T ss_dssp T------TEEEEEEECGGGSCEEEEEECTTSC-EEEEECCGGGSGGGB
T ss_pred C------CCEEEEEECCceecCCeeEECCCCc-EEEEeCccccccccc
Confidence 3 332222221 245689999999877 666766554444443
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.68 E-value=1.6e-06 Score=88.91 Aligned_cols=267 Identities=13% Similarity=0.085 Sum_probs=151.8
Q ss_pred EEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCC----------ceeeeeecCCCCcEEEecCCCcEEEEe
Q 011709 155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN----------AEFALAMCPTEPYVLSGGKDKSVVLWS 224 (479)
Q Consensus 155 ~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------~v~~l~~s~~~~~l~s~s~dg~i~vwd 224 (479)
.|+.++.++.|+-+|..+++.. ..+...... ...++++ .+..|+.++.|+.|..+|
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~------------W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD 144 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRI------------WTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALD 144 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEE------------EEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEE------------EEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEE
Confidence 5666666788888888887332 222211100 0012222 356788888899999999
Q ss_pred cCCCccccccCCc-c-----cccCC--CCCceeecCCCC----CCCCCCCCCCCCCCCceeecCCC--------------
Q 011709 225 IQDHITSSATDPA-T-----AKSAG--SSGSIIKQSPKP----GDGNDKAADGPSVGPRGIYNGHE-------------- 278 (479)
Q Consensus 225 ~~~~~~~~~~~~~-~-----~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~-------------- 278 (479)
..++...-..... . ..... .....+...... ..+.+..+|..+++.+..+....
T Consensus 145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 224 (677)
T 1kb0_A 145 AATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKR 224 (677)
T ss_dssp TTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred CCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccc
Confidence 9887654322211 0 00000 011122222111 13455566666665554443211
Q ss_pred ------------------CceEEEEEeeCCCcEEEEEecCC-------------------eEEEEeCCCCCCCceeeec-
Q 011709 279 ------------------DTVEDVTFCPSSAQEFCSVGDDS-------------------CLILWDARVGTSPVIKVEK- 320 (479)
Q Consensus 279 ------------------~~v~~l~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~- 320 (479)
.....++++|++ .+++.++.++ .|..+|.++++ .+..+.
T Consensus 225 g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~--~~W~~~~ 301 (677)
T 1kb0_A 225 AARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK--YKWHYQE 301 (677)
T ss_dssp HHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEES
T ss_pred ccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC--EEEEEec
Confidence 112356788887 4666666554 59999999998 343332
Q ss_pred -cCC-------CCeEEEEecCCCC---cEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCC-----------CcE---
Q 011709 321 -AHD-------ADLHCVDWNPLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-----------AAV--- 375 (479)
Q Consensus 321 -~~~-------~~v~~l~~sp~~~---~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~-----------~~v--- 375 (479)
.|. .....+.... ++ .+++.++.+|.|+++|.++ ++++..+.... .++
T Consensus 302 ~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~t------G~~l~~~~~~~~~~~~~~d~~g~~~~~~ 374 (677)
T 1kb0_A 302 TPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTN------GKFISAKNFVPVNWASGYDKHGKPIGIA 374 (677)
T ss_dssp STTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTT------CCEEEEEESSCCSSEEEECTTSCEEECG
T ss_pred CCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCC------CCEeccccccccCcccccCCCCceeecc
Confidence 221 1222333334 56 7899999999999999998 66665443211 011
Q ss_pred ---------------------EEEEEecCCCcEEEEEeC-----------------------------------------
Q 011709 376 ---------------------LCVQWSPDKSSVFGSSAE----------------------------------------- 393 (479)
Q Consensus 376 ---------------------~~l~~~p~~~~llas~s~----------------------------------------- 393 (479)
..++|+|+...++ +...
T Consensus 375 ~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~y-v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 453 (677)
T 1kb0_A 375 AARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVY-LPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKS 453 (677)
T ss_dssp GGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEE-EEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCS
T ss_pred ccCcCCCccEECcCcccccCCCCceEcCCCCEEE-EeChhcceeeecccccccccccccccccccccccccccccccCCC
Confidence 2578899888544 4332
Q ss_pred --CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 394 --DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 394 --Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
.|.|..||+.++ ++++.+..........+..++..++.++. +|.+++|+...-
T Consensus 454 ~~~g~l~A~D~~tG---------------~~~W~~~~~~~~~~g~~~~~g~~v~~g~~-----dg~l~a~D~~tG 508 (677)
T 1kb0_A 454 KPFGRLLAWDPVAQ---------------KAAWSVEHVSPWNGGTLTTAGNVVFQGTA-----DGRLVAYHAATG 508 (677)
T ss_dssp CCEEEEEEEETTTT---------------EEEEEEEESSSCCCCEEEETTTEEEEECT-----TSEEEEEETTTC
T ss_pred CCccEEEEEeCCCC---------------cEEeecCCCCCCcCcceEeCCCEEEEECC-----CCcEEEEECCCC
Confidence 266888888774 34444443334455566777777777766 899999986543
No 233
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.67 E-value=1.7e-05 Score=73.38 Aligned_cols=243 Identities=9% Similarity=-0.023 Sum_probs=136.1
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEec--------------------cCCCceee
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG--------------------HQDNAEFA 201 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------------------h~~~~v~~ 201 (479)
....+++.+ +++++.++..++.|..||..+... ..+.. ... ...+
T Consensus 20 ~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~p~g 84 (322)
T 2fp8_A 20 APNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGF-------------VDFAYASPYWNKAFCENSTDAEKRPLCG-RTYD 84 (322)
T ss_dssp CCCCEECCT-TCSSEEEECTTSEEEEECCTTTCE-------------EEEEESCTTCCHHHHTTCCCGGGHHHHC-CEEE
T ss_pred CceEEEEcC-CCCEEEEEcCCCeEEEECCCCCce-------------EEEecccccccccccccccchhccccCC-CCce
Confidence 356778888 677777888889999998775411 11110 011 3578
Q ss_pred eeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC-CCCc
Q 011709 202 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDT 280 (479)
Q Consensus 202 l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~ 280 (479)
+++.+++..|+.+...+.|..+|..++...... ....+ ....
T Consensus 85 i~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~-------------------------------------~~~~~~~~~~ 127 (322)
T 2fp8_A 85 ISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLA-------------------------------------TSVDGVPFKW 127 (322)
T ss_dssp EEEETTTTEEEEEETTTEEEEECTTCEECEEEE-------------------------------------SEETTEECSC
T ss_pred EEEcCCCCcEEEEECCCCEEEEeCCCCEEEEec-------------------------------------ccCCCCcccc
Confidence 999983334555544555888886543211000 00000 1134
Q ss_pred eEEEEEee-CCCcEEEEEec-----------------CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEE
Q 011709 281 VEDVTFCP-SSAQEFCSVGD-----------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG 342 (479)
Q Consensus 281 v~~l~~~~-~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tg 342 (479)
.+++++.+ +| .++++-.. ++.|..||..++. .. .........+.++++| ++++|+.+
T Consensus 128 p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~-~~~~~~~~p~gia~~~-dg~~lyv~ 202 (322)
T 2fp8_A 128 LYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE--TT-LLLKELHVPGGAEVSA-DSSFVLVA 202 (322)
T ss_dssp EEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE--EE-EEEEEESCCCEEEECT-TSSEEEEE
T ss_pred cceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCE--EE-EeccCCccCcceEECC-CCCEEEEE
Confidence 67899999 88 55555432 3778899987665 22 1111223456799999 88755555
Q ss_pred -eCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeC----------CCCEEEEeCCCCCccccC
Q 011709 343 -SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE----------DGLLNIWDYEKVGKKVEQ 411 (479)
Q Consensus 343 -s~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~----------Dg~v~iwd~~~~~~~~~~ 411 (479)
+..+.|.+||+..... +. ...+....+ ...++++++|. ++++... .+.|..+|.. +...
T Consensus 203 d~~~~~I~~~~~~~~~~---~~-~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~--G~~~-- 272 (322)
T 2fp8_A 203 EFLSHQIVKYWLEGPKK---GT-AEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEF--GNIL-- 272 (322)
T ss_dssp EGGGTEEEEEESSSTTT---TC-EEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTT--SCEE--
T ss_pred eCCCCeEEEEECCCCcC---Cc-cceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCC--CCEE--
Confidence 5568999999875210 11 111111223 78899999998 5555543 3567777753 2211
Q ss_pred CCCCCCCCCeeEEEeCCC--CCceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 412 GPRTTNYPAGLFFQHAGH--SPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 412 ~~~~~~~~~~l~~~~~gh--~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
..+....|. ..++.+++ .++...+++.. .+.|..++....
T Consensus 273 ---------~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~-----~~~i~~~~~~~~ 314 (322)
T 2fp8_A 273 ---------EVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF-----HGSVGILVYDKK 314 (322)
T ss_dssp ---------EEEECCTTTTTSCCCEEEE-ETTEEEEECSS-----CSEEEEEEC---
T ss_pred ---------EEEECCCCCccccceEEEE-eCCEEEEeecC-----CCceEEEecccc
Confidence 111112221 23566666 45555555544 678887765543
No 234
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.65 E-value=1e-05 Score=71.89 Aligned_cols=203 Identities=11% Similarity=0.001 Sum_probs=123.4
Q ss_pred eeeeeecCCCCcEEEecC--CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC
Q 011709 199 EFALAMCPTEPYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 276 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (479)
..+++|++++...++.+. ++.|++.|+.++....... +..
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~--------------------------------------l~~ 64 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK--------------------------------------MDD 64 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE--------------------------------------CCT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe--------------------------------------cCC
Confidence 469999998754444443 6899999998765432110 111
Q ss_pred CCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCC
Q 011709 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL 356 (479)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~ 356 (479)
+ .....+++. +..++++.-.++.+.++|..+.+ .+..+......-.. +++ ++..++++..++.|.++|..+
T Consensus 65 ~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~--v~~~i~~g~~~g~g--lt~-Dg~~l~vs~gs~~l~viD~~t- 135 (266)
T 2iwa_A 65 S-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS--NIKNFTHQMKDGWG--LAT-DGKILYGSDGTSILYEIDPHT- 135 (266)
T ss_dssp T-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE--EEEEEECCSSSCCE--EEE-CSSSEEEECSSSEEEEECTTT-
T ss_pred C-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCc--EEEEEECCCCCeEE--EEE-CCCEEEEECCCCeEEEEECCC-
Confidence 1 122345554 44677777788999999999887 55555322122233 445 555566666788999999988
Q ss_pred CCCCCCCceeeecCCC-----CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEE--eCCC
Q 011709 357 TSNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ--HAGH 429 (479)
Q Consensus 357 ~~~~~~~~~~~~~~h~-----~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~--~~gh 429 (479)
.+.+..+.-.. ..++.+.|. ++ .+++....++.|.+-|..++ +......... +.-. ..++
T Consensus 136 -----~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg-~V~~~I~~~g-----~~~~~~~~~~ 202 (266)
T 2iwa_A 136 -----FKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDG-TLLGWILLPN-----LRKKLIDEGF 202 (266)
T ss_dssp -----CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTC-CEEEEEECHH-----HHHHHHHTTC
T ss_pred -----CcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCC-cEEEEEECCC-----cccccccccc
Confidence 45555554221 246788888 66 47877777889999999884 2221100000 0000 0011
Q ss_pred ---CCceeEEEecCCCeeeecCCCccccceeEEEEeecc
Q 011709 430 ---SPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLE 465 (479)
Q Consensus 430 ---~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~ 465 (479)
.....++|+|++..++.++.. .+++...+...
T Consensus 203 ~~~~v~nGIa~~~~~~~lfVTgk~----~~~v~~i~l~~ 237 (266)
T 2iwa_A 203 RDIDVLNGIAWDQENKRIFVTGKL----WPKLFEIKLHL 237 (266)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETT----CSEEEEEEEEE
T ss_pred cccCceEEEEEcCCCCEEEEECCC----CCeEEEEEEec
Confidence 124899999998777666654 66776665544
No 235
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.64 E-value=1.5e-05 Score=69.23 Aligned_cols=192 Identities=9% Similarity=0.100 Sum_probs=120.9
Q ss_pred eeEEEecCCCc--eeEEEecCCCCcEEEEEeCCC--cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC
Q 011709 132 KKHKTIIHPGE--VNRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 207 (479)
Q Consensus 132 ~~~~~~~h~~~--V~~l~~~p~~~~~lat~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~ 207 (479)
++++.+.|... ...+.|++ +.++.+.+.+| .|+++|+.++ +.............-+++..
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tg------------kv~~~~~l~~~~fgeGi~~~-- 73 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETG------------RILQRAEVPPPYFGAGIVAW-- 73 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTC------------CEEEEEECCTTCCEEEEEEE--
T ss_pred EEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCC------------CEEEEEeCCCCcceeEEEEe--
Confidence 46777788765 45888876 56777777654 8999999998 33333332222111234443
Q ss_pred CCcEE-EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 208 EPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 208 ~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
++.|. ..-.++.+.++|..+.... ..+.... ....+
T Consensus 74 ~~~ly~ltw~~~~v~v~D~~tl~~~----------------------------------------~ti~~~~---~Gwgl 110 (243)
T 3mbr_X 74 RDRLIQLTWRNHEGFVYDLATLTPR----------------------------------------ARFRYPG---EGWAL 110 (243)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEE----------------------------------------EEEECSS---CCCEE
T ss_pred CCEEEEEEeeCCEEEEEECCcCcEE----------------------------------------EEEeCCC---CceEE
Confidence 44444 4456899999999764432 2222111 12333
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccC--C---CCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCC
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH--D---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~---~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~ 361 (479)
++++..+++| ..++.|.++|..+.+ .+...... . ..++-+.|. ++.+++..-.+..|.+.|.++
T Consensus 111 t~dg~~L~vS-dgs~~l~~iDp~t~~--~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~t------ 179 (243)
T 3mbr_X 111 TSDDSHLYMS-DGTAVIRKLDPDTLQ--QVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPAS------ 179 (243)
T ss_dssp EECSSCEEEE-CSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTT------
T ss_pred eeCCCEEEEE-CCCCeEEEEeCCCCe--EEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCC------
Confidence 4566454444 568899999999987 44444321 1 345677776 566666555678999999998
Q ss_pred CCceeeecCC-------------CCcEEEEEEecCCCcEEEEEeC
Q 011709 362 GSPINKFEGH-------------SAAVLCVQWSPDKSSVFGSSAE 393 (479)
Q Consensus 362 ~~~~~~~~~h-------------~~~v~~l~~~p~~~~llas~s~ 393 (479)
++.+..+... ....+.|+++|++..+|++|=.
T Consensus 180 G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 180 GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 6666655421 2357899999999888877743
No 236
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.63 E-value=9e-06 Score=71.34 Aligned_cols=188 Identities=9% Similarity=0.069 Sum_probs=121.6
Q ss_pred eeEEEecCCCce--eEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceee--eeecCC
Q 011709 132 KKHKTIIHPGEV--NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA--LAMCPT 207 (479)
Q Consensus 132 ~~~~~~~h~~~V--~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~--l~~s~~ 207 (479)
++.+.+.|...- ..+.|. ++.++.+.+.+|.|+++|+.+++ ....+ -.. ..++ +++ +
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgk------------v~~~~-l~~--~~FgeGit~--~ 104 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQ------------PVWME-RLG--NIFAEGLAS--D 104 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSS------------CSEEE-ECT--TCCEEEEEE--C
T ss_pred EEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCc------------EEeEE-CCC--CcceeEEEE--e
Confidence 466777887654 578876 46788888899999999999983 33333 111 1233 554 4
Q ss_pred CCcEE-EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 208 EPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 208 ~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
++.|. ..-.++.+.++|..+.... ..+... ..-..+
T Consensus 105 g~~Ly~ltw~~~~v~V~D~~Tl~~~----------------------------------------~ti~~~-~eGwGL-- 141 (268)
T 3nok_A 105 GERLYQLTWTEGLLFTWSGMPPQRE----------------------------------------RTTRYS-GEGWGL-- 141 (268)
T ss_dssp SSCEEEEESSSCEEEEEETTTTEEE----------------------------------------EEEECS-SCCCCE--
T ss_pred CCEEEEEEccCCEEEEEECCcCcEE----------------------------------------EEEeCC-CceeEE--
Confidence 44444 4446899999999765432 222211 111233
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCCCCceeeecc--CC---CCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCC
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~---~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~ 361 (479)
++++. .|+.+..++.|.++|..+.+ .+..... +. ..++.+.|. ++.+.+..-.+..|.+.|.++
T Consensus 142 t~Dg~-~L~vSdGs~~l~~iDp~T~~--v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~T------ 210 (268)
T 3nok_A 142 CYWNG-KLVRSDGGTMLTFHEPDGFA--LVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPAT------ 210 (268)
T ss_dssp EEETT-EEEEECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTT------
T ss_pred ecCCC-EEEEECCCCEEEEEcCCCCe--EEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCC------
Confidence 35564 45555568899999999887 4544432 22 245778887 566665555688999999998
Q ss_pred CCceeeecCC-------------CCcEEEEEEecCCCcEEEEEe
Q 011709 362 GSPINKFEGH-------------SAAVLCVQWSPDKSSVFGSSA 392 (479)
Q Consensus 362 ~~~~~~~~~h-------------~~~v~~l~~~p~~~~llas~s 392 (479)
++.+..+... ....+.|+|+|++..+|+||=
T Consensus 211 G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 211 GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 6666665422 236789999999888887774
No 237
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.60 E-value=5.1e-09 Score=99.38 Aligned_cols=141 Identities=13% Similarity=0.078 Sum_probs=70.6
Q ss_pred CCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEE
Q 011709 207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF 286 (479)
Q Consensus 207 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 286 (479)
++..+++++.||.|..||..++.... .+.. ..+.+..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W----------------------------------------~~~~--~~~~s~p~ 45 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW----------------------------------------TLKE--DPVLQVPT 45 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE----------------------------------------EEEC--CCSCCCC-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE----------------------------------------EecC--CCceecce
Confidence 46789999999999999998765421 1111 12223333
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCC-CeE-EEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCc
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA-DLH-CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP 364 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~-~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~ 364 (479)
..++ .++++++.||.|+.||..+++ .+.....+.. .+. +..+. .+..+++|+.|+.|+.||.++ ++.
T Consensus 46 ~~~g-~~~v~~s~dg~l~a~d~~tG~--~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~t------G~~ 114 (369)
T 2hz6_A 46 HVEE-PAFLPDPNDGSLYTLGSKNNE--GLTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLT------GEK 114 (369)
T ss_dssp -----CCEEECTTTCCEEEC-----C--CSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------
T ss_pred EcCC-CEEEEeCCCCEEEEEECCCCc--eeeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCC------CcE
Confidence 3445 567778899999999998887 2322222211 110 01111 345778888999999999998 777
Q ss_pred eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 365 ~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+..+..+. ...++|++.. +++++.|+.|+.||.+++
T Consensus 115 ~w~~~~~~----~~~~~p~~~~-v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 115 QQTLSSAF----ADSLSPSTSL-LYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp -----------------------EEEEEEEEEEECCCSSSS
T ss_pred EEEecCCC----cccccccCCE-EEEEecCCEEEEEECCCC
Confidence 77766553 2445677764 568888999999999884
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.60 E-value=3.6e-06 Score=86.46 Aligned_cols=79 Identities=8% Similarity=0.062 Sum_probs=52.4
Q ss_pred CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEE
Q 011709 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (479)
Q Consensus 345 dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 424 (479)
+|.|+.||+.+ ++.+.++..+. ++..-.+...+. +++.++.||.|+.||.+++ ++++
T Consensus 454 ~g~l~A~D~~t------G~~~W~~~~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG---------------~~lw 510 (689)
T 1yiq_A 454 SGKLIAWDPVK------QQAAWEVPYVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADTG---------------EKLW 510 (689)
T ss_dssp EEEEEEEETTT------TEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTC---------------CEEE
T ss_pred ceeEEEEECCC------CCeEeEccCCC-CccCccceECCC-EEEEECCCCcEEEEECCCC---------------ccce
Confidence 37799999988 77777776543 333345566666 5668899999999999995 3344
Q ss_pred EeCCCCC--ceeEEEecCCCeeee
Q 011709 425 QHAGHSP--SSSIKFVLRESCLVD 446 (479)
Q Consensus 425 ~~~gh~~--~~~~~~sp~~~~l~~ 446 (479)
....... ..-+.|..+|+..++
T Consensus 511 ~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 511 EQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEE
T ss_pred eeeCCCCcccCceEEEECCEEEEE
Confidence 3332222 355777788764443
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.57 E-value=4.4e-06 Score=85.62 Aligned_cols=161 Identities=11% Similarity=0.088 Sum_probs=98.2
Q ss_pred CCCCCCCCCCCceeecC--CC-------CceEEEEEeeCCC--cEEEEEecCCeEEEEeCCCCCCCceeeeccCC-----
Q 011709 260 DKAADGPSVGPRGIYNG--HE-------DTVEDVTFCPSSA--QEFCSVGDDSCLILWDARVGTSPVIKVEKAHD----- 323 (479)
Q Consensus 260 ~~~~~~~~~~~~~~~~~--h~-------~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----- 323 (479)
+..+|..+++.+..++. |. ....-+....+|. ..++.++.+|.|.++|.++++ ++.......
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~--~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK--FISAKNFVPVNWAS 362 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC--EEEEEESSCCSSEE
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC--EeccccccccCccc
Confidence 45556666666555442 21 1112223333552 468889999999999999998 333322110
Q ss_pred ------CCe------------------------EEEEecCCCCcEEEEEeC-----------------------------
Q 011709 324 ------ADL------------------------HCVDWNPLDDNLILTGSA----------------------------- 344 (479)
Q Consensus 324 ------~~v------------------------~~l~~sp~~~~~l~tgs~----------------------------- 344 (479)
..+ ..++|+| +..++++...
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 441 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN 441 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence 001 1578899 6677776543
Q ss_pred --------------CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCcccc
Q 011709 345 --------------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE 410 (479)
Q Consensus 345 --------------dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~ 410 (479)
.|.|..||+.+ ++.+.++. +..++.+..+...+.. ++.++.||.+++||++++
T Consensus 442 ~g~~~~~~~~~~~~~g~l~A~D~~t------G~~~W~~~-~~~~~~~g~~~~~g~~-v~~g~~dg~l~a~D~~tG----- 508 (677)
T 1kb0_A 442 TAKFFNAEPPKSKPFGRLLAWDPVA------QKAAWSVE-HVSPWNGGTLTTAGNV-VFQGTADGRLVAYHAATG----- 508 (677)
T ss_dssp CCEEECSSCCCSCCEEEEEEEETTT------TEEEEEEE-ESSSCCCCEEEETTTE-EEEECTTSEEEEEETTTC-----
T ss_pred cccccccccCCCCCccEEEEEeCCC------CcEEeecC-CCCCCcCcceEeCCCE-EEEECCCCcEEEEECCCC-----
Confidence 27899999988 77777665 3344555566777774 557889999999999984
Q ss_pred CCCCCCCCCCeeEEEeCCCCC--ceeEEEecCCCeeee
Q 011709 411 QGPRTTNYPAGLFFQHAGHSP--SSSIKFVLRESCLVD 446 (479)
Q Consensus 411 ~~~~~~~~~~~l~~~~~gh~~--~~~~~~sp~~~~l~~ 446 (479)
++++...-... ..-+.|.++|+.++.
T Consensus 509 ----------~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 509 ----------EKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp ----------CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ----------ceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 23333321122 355677788765444
No 240
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.57 E-value=0.00023 Score=66.49 Aligned_cols=198 Identities=7% Similarity=-0.008 Sum_probs=124.5
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE-EecCCCc
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKS 219 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~-s~s~dg~ 219 (479)
+...|....+ .+.++++ ....|+..++... .....+.+.. ...+++|++.++.|+ +-...+.
T Consensus 34 d~~~C~~~~~-~~~ll~~--~~~~I~~i~~~g~------------~~~~~~~~~~--~~~~l~~d~~~~~ly~~D~~~~~ 96 (349)
T 3v64_C 34 DRRSCKALGP-EPVLLFA--NRIDIRQVLPHRS------------EYTLLLNNLE--NAIALDFHHRRELVFWSDVTLDR 96 (349)
T ss_dssp TSSCEEESSS-CCEEEEE--CBSCEEEECTTSC------------CEEEEECSCS--CEEEEEEETTTTEEEEEETTTTE
T ss_pred CCCccccccc-CceeEee--cccceEEEeCCCC------------eeEEeecCCC--ceEEEEEeccccEEEEEeccCCc
Confidence 3445555555 4544444 2345887777654 2222233333 257999998766554 4456788
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
|..+++...... ............+++.+.+..++++-..
T Consensus 97 I~r~~~~g~~~~----------------------------------------~~~~~~~~~p~glavd~~~g~ly~~d~~ 136 (349)
T 3v64_C 97 ILRANLNGSNVE----------------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDSG 136 (349)
T ss_dssp EEEEETTSCSCE----------------------------------------EEECSSCSCCCEEEEETTTTEEEEEETT
T ss_pred eEEEecCCCCce----------------------------------------EEEeCCCCCccEEEEecCCCeEEEEcCC
Confidence 988888643211 1111112345688998766577788777
Q ss_pred CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCCceeee-cCCCCcEEE
Q 011709 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLC 377 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d-g~I~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~ 377 (479)
.+.|.+.++.... ........-.....++++|.++.++++-... +.|..+++.. .....+ ...-...+.
T Consensus 137 ~~~I~~~~~dG~~--~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~~~~PnG 207 (349)
T 3v64_C 137 TSRIEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-------SGRRIIADTHLFWPNG 207 (349)
T ss_dssp TTEEEEEETTSCS--CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEESCCSSCSCEEE
T ss_pred CCeEEEEcCCCCc--eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-------CCcEEEEECCCCCcce
Confidence 8899999987654 2222223345678999999555556665555 7899998874 222222 223346789
Q ss_pred EEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 378 VQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 378 l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
|+|+|++..|+++-+..+.|..+|+..
T Consensus 208 la~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 208 LTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 999998887887777788999999864
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.56 E-value=1.3e-06 Score=85.63 Aligned_cols=140 Identities=11% Similarity=0.076 Sum_probs=83.8
Q ss_pred CeEEEEeCCC--CCCCceeeeccCCCCeEEEEecCCCCcEEEEEe-CCCcEEEEecCCCCC------CCCCCceeeecCC
Q 011709 301 SCLILWDARV--GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTS------NGVGSPINKFEGH 371 (479)
Q Consensus 301 g~i~iwd~~~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs-~dg~I~iwd~~~~~~------~~~~~~~~~~~~h 371 (479)
+.|.+.|.++ ++ ..+.... -.....++.++| ||+++++++ .+.+|.++|+.+... ......+.+.. -
T Consensus 254 ~~V~VID~~~~~~~-~~~~~Ip-vg~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-v 329 (595)
T 1fwx_A 254 NGVKVVDGRKEASS-LFTRYIP-IANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-L 329 (595)
T ss_dssp TTEEEEECSGGGCC-SSEEEEE-EESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-C
T ss_pred CcEEEEeCcccCCc-eeEEEEe-cCCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-C
Confidence 4588899987 44 1133332 233567899999 888766665 478999999986210 00001223333 2
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC------ceeEEEecCCCeee
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP------SSSIKFVLRESCLV 445 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~------~~~~~~sp~~~~l~ 445 (479)
......++|+|+| +++++.-.|++|.+||+........-+. ..+.+-....|-. ...+..+|||++|+
T Consensus 330 G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~-----~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~ 403 (595)
T 1fwx_A 330 GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEK-----VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV 403 (595)
T ss_dssp CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCS-----CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccc-----cceeEEEeecccccccceeccceEeCCCCCEEE
Confidence 3457889999999 6888888899999999876211110000 0122222222222 23456689999998
Q ss_pred ecCCC
Q 011709 446 DNNHG 450 (479)
Q Consensus 446 ~~~~~ 450 (479)
+....
T Consensus 404 ~~Nk~ 408 (595)
T 1fwx_A 404 CLSKF 408 (595)
T ss_dssp EEESC
T ss_pred EcCCC
Confidence 87663
No 242
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.55 E-value=8e-05 Score=65.67 Aligned_cols=205 Identities=7% Similarity=0.105 Sum_probs=127.1
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEE--eccCCCceeeeeecCCCCcEEEecCC
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL--TGHQDNAEFALAMCPTEPYVLSGGKD 217 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~v~~l~~s~~~~~l~s~s~d 217 (479)
.+.+..++|.|+++.++|+...++.|...|.. + +....+ .+..+ .-+|++.+++.++++.-.+
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g------------~v~~~i~l~g~~D--~EGIa~~~~g~~~vs~E~~ 90 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G------------DLIRTIPLDFVKD--LETIEYIGDNQFVISDERD 90 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C------------CEEEEEECSSCSS--EEEEEECSTTEEEEEETTT
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C------------CEEEEEecCCCCC--hHHeEEeCCCEEEEEECCC
Confidence 35799999999767777778888899999987 4 222333 33333 4588998888877776677
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
+.+.++++........... ... ++. ....+.....|+|.|.+..+++ +
T Consensus 91 ~~l~~~~v~~~~~i~~~~~-----------------------------~~~-~~~-~~~~N~g~EGLA~d~~~~~L~v-a 138 (255)
T 3qqz_A 91 YAIYVISLTPNSEVKILKK-----------------------------IKI-PLQ-ESPTNCGFEGLAYSRQDHTFWF-F 138 (255)
T ss_dssp TEEEEEEECTTCCEEEEEE-----------------------------EEC-CCS-SCCCSSCCEEEEEETTTTEEEE-E
T ss_pred CcEEEEEcCCCCeeeeeee-----------------------------ecc-ccc-cccccCCcceEEEeCCCCEEEE-E
Confidence 8899998864321000000 000 000 0123556899999999855444 5
Q ss_pred ecCCeEEEEeCCC--CCCCceeee-------ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee
Q 011709 298 GDDSCLILWDARV--GTSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 298 ~~dg~i~iwd~~~--~~~~~~~~~-------~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
.+.....+|.+.. ... .+... ..+...+.+++++|..+.+++.......|.++|... +++..+
T Consensus 139 ~E~~p~~i~~~~g~~~~~-~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-------~~~~~~ 210 (255)
T 3qqz_A 139 KEKNPIEVYKVNGLLSSN-ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-------EVIGEM 210 (255)
T ss_dssp EESSSEEEEEEESTTCSS-CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-------CEEEEE
T ss_pred ECcCCceEEEEcccccCC-ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-------CEEEEE
Confidence 5444444444431 110 11111 123456789999997788888888889999999773 555544
Q ss_pred cCCC---------CcEEEEEEecCCCcEEEEEeCCCCEEEEe
Q 011709 369 EGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 369 ~~h~---------~~v~~l~~~p~~~~llas~s~Dg~v~iwd 401 (479)
.-.. ...-.|+|.++|+ ++++ +.-..+.++.
T Consensus 211 ~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 211 SLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFYRFT 250 (255)
T ss_dssp ECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEEEEE
T ss_pred EcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEEEEE
Confidence 3221 2568999999997 6655 5555555443
No 243
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.52 E-value=0.00024 Score=66.46 Aligned_cols=203 Identities=3% Similarity=-0.059 Sum_probs=128.1
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCc-EEEecCC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-VLSGGKD 217 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~-l~s~s~d 217 (479)
....+..++|.+.++.++.+-...+.|+.++..... ....+..... ...++++.+.+.. .++-...
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~------------~~~~~~~~~~-~p~glavd~~~g~ly~~d~~~ 137 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN------------VEEVVSTGLE-SPGGLAVDWVHDKLYWTDSGT 137 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------------CEEEECSSCS-CCCEEEEETTTTEEEEEETTT
T ss_pred CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC------------ceEEEeCCCC-CccEEEEecCCCeEEEEcCCC
Confidence 344578999998777788787788899999987652 1111221112 2468888876554 4555567
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
+.|.+.+++..... ..+........++++.|.+..++++-
T Consensus 138 ~~I~~~~~dG~~~~----------------------------------------~l~~~~l~~P~~iavdp~~g~ly~td 177 (349)
T 3v64_C 138 SRIEVANLDGAHRK----------------------------------------VLLWQSLEKPRAIALHPMEGTIYWTD 177 (349)
T ss_dssp TEEEEEETTSCSCE----------------------------------------EEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred CeEEEEcCCCCceE----------------------------------------EEEeCCCCCcceEEEecCcCeEEEec
Confidence 88999887642211 11112234568999999765777776
Q ss_pred ecC-CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEE
Q 011709 298 GDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (479)
Q Consensus 298 ~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 376 (479)
... +.|..+++.... ........-...+.|+++|.++.+.++-...+.|..+|+.. ......+........
T Consensus 178 ~~~~~~I~r~~~dG~~--~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG------~~~~~~~~~~~~~P~ 249 (349)
T 3v64_C 178 WGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQGLPHPF 249 (349)
T ss_dssp CSSSCEEEEEETTSCS--CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSCEEEECSSCSSEE
T ss_pred cCCCCEEEEEeCCCCC--cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC------CceEEEEeCCCCCce
Confidence 666 889999887544 12222223345789999984455555555578899999874 122222333344567
Q ss_pred EEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 377 ~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++++. +..++++-...+.|..+|...
T Consensus 250 giav~--~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 250 AITVF--EDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred EEEEE--CCEEEEecCCCCeEEEEEccC
Confidence 88883 334777777788888888544
No 244
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.52 E-value=0.00015 Score=68.97 Aligned_cols=196 Identities=7% Similarity=-0.009 Sum_probs=122.3
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE-EecCCCcEE
Q 011709 143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVV 221 (479)
Q Consensus 143 V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~-s~s~dg~i~ 221 (479)
-.|.+..+ .+.++++ ....|+..++... .....+.+.. ...+++|.+.++.|+ +-...+.|.
T Consensus 79 ~~C~~~~~-~~~l~~~--~~~~I~~i~~~~~------------~~~~~~~~~~--~~~gl~~d~~~~~ly~~D~~~~~I~ 141 (386)
T 3v65_B 79 RSCKALGP-EPVLLFA--NRIDIRQVLPHRS------------EYTLLLNNLE--NAIALDFHHRRELVFWSDVTLDRIL 141 (386)
T ss_dssp SCEEECSS-CCEEEEE--CBSCEEEECTTSC------------CCEEEECSCS--CEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CeECCccc-cceeEee--cCccceeeccCCC------------cEEEEecCCC--ccEEEEEecCCCeEEEEeCCCCcEE
Confidence 34444444 4434433 3357888888765 2222333333 257999998665444 545678899
Q ss_pred EEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC
Q 011709 222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301 (479)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 301 (479)
.+++...... ..+.........+++.+.+..++++-...+
T Consensus 142 r~~~~g~~~~----------------------------------------~~~~~~~~~p~glavd~~~g~lY~~d~~~~ 181 (386)
T 3v65_B 142 RANLNGSNVE----------------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTS 181 (386)
T ss_dssp EEETTSCCEE----------------------------------------EEECSSCSCCCCEEEETTTTEEEEEETTTT
T ss_pred EEecCCCCcE----------------------------------------EEEeCCCCCccEEEEEeCCCeEEEEcCCCC
Confidence 9988643211 111111223467888876657777777788
Q ss_pred eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCCceeee-cCCCCcEEEEE
Q 011709 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQ 379 (479)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d-g~I~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~ 379 (479)
.|.+.++.... ..............++++|.++.++++-... +.|..+++.. .....+ ...-...+.|+
T Consensus 182 ~I~~~~~dg~~--~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~~~~PnGla 252 (386)
T 3v65_B 182 RIEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-------SGRRIIADTHLFWPNGLT 252 (386)
T ss_dssp EEEECBTTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEEEECSSCSCEEEEE
T ss_pred eEEEEeCCCCc--eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-------CCcEEEEECCCCCeeeEE
Confidence 99999987544 2222333345678999999455555555455 7888888874 222222 23344678999
Q ss_pred EecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 380 WSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 380 ~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
|+|++..|+++-+..+.|..+|+..
T Consensus 253 vd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 253 IDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEGGGTEEEEEETTTTEEEEECTTS
T ss_pred EeCCCCEEEEEECCCCEEEEEeCCC
Confidence 9998887887777788899999864
No 245
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.52 E-value=0.00011 Score=69.93 Aligned_cols=203 Identities=3% Similarity=-0.054 Sum_probs=127.1
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE-EEecCC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKD 217 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l-~s~s~d 217 (479)
....+..++|.+.++.++.+-...+.|+.++..... ....+..... ...++++.+.+..| ++-...
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~------------~~~~~~~~~~-~p~glavd~~~g~lY~~d~~~ 180 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN------------VEEVVSTGLE-SPGGLAVDWVHDKLYWTDSGT 180 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC------------EEEEECSSCS-CCCCEEEETTTTEEEEEETTT
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC------------cEEEEeCCCC-CccEEEEEeCCCeEEEEcCCC
Confidence 345578899998777788887788899999987651 1111111111 24578888765544 455556
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
+.|.+.++...... ..+.........+++.|.+..++++-
T Consensus 181 ~~I~~~~~dg~~~~----------------------------------------~l~~~~l~~P~giavdp~~g~ly~td 220 (386)
T 3v65_B 181 SRIEVANLDGAHRK----------------------------------------VLLWQSLEKPRAIALHPMEGTIYWTD 220 (386)
T ss_dssp TEEEECBTTSCSCE----------------------------------------EEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CeEEEEeCCCCceE----------------------------------------EeecCCCCCCcEEEEEcCCCeEEEec
Confidence 77888776532110 11122234568999998775666666
Q ss_pred ecC-CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEE
Q 011709 298 GDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL 376 (479)
Q Consensus 298 ~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 376 (479)
... +.|..+++.... ........-...+.|+|+|..+.+.++-+..+.|..+|+.. ......+........
T Consensus 221 ~~~~~~I~r~~~dG~~--~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG------~~~~~~~~~~~~~P~ 292 (386)
T 3v65_B 221 WGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQGLPHPF 292 (386)
T ss_dssp CSSSCEEEEEETTSCS--CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS------CSCEEEECSSCSSEE
T ss_pred cCCCCEEEEEeCCCCC--cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC------CeeEEEEECCCCCce
Confidence 555 789999887544 22222233445789999984455555555678899999864 222222333344567
Q ss_pred EEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 377 CVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 377 ~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.|++. +..++++....+.|..+|...
T Consensus 293 giav~--~~~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 293 AITVF--EDSLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred EEEEE--CCEEEEeeCCCCeEEEEECCC
Confidence 88883 334777877788899998555
No 246
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.49 E-value=2.7e-05 Score=73.81 Aligned_cols=217 Identities=10% Similarity=-0.012 Sum_probs=119.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCcccc
Q 011709 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 232 (479)
Q Consensus 153 ~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~ 232 (479)
+..++.++.++.|..+|..++. .......... ....... .+..++.++.++.|..+|..++....
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~------------~~W~~~~~~~-~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W 167 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGT------------VAWQTKVAGE-ALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKW 167 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCC------------EEEEEECSSC-CCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCC------------EEEEEeCCCc-eEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 3467778889999999999883 2233332221 1111122 14578888889999999998775432
Q ss_pred ccCCcccc-------cCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCC-------c---e-EEEEEeeCCCcEE
Q 011709 233 ATDPATAK-------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-------T---V-EDVTFCPSSAQEF 294 (479)
Q Consensus 233 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-------~---v-~~l~~~~~~~~~l 294 (479)
........ .+......+... ...+.+..++..+.+.+........ . + ..... . + ..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~v~~g--~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~-~-~~v 242 (376)
T 3q7m_A 168 TVNLDMPSLSLRGESAPTTAFGAAVVG--GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-V-N-GVV 242 (376)
T ss_dssp EEECCC-----CCCCCCEEETTEEEEC--CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-E-T-TEE
T ss_pred EEeCCCCceeecCCCCcEEECCEEEEE--cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-E-C-CEE
Confidence 22111000 000001111111 1223344444444444333321110 0 0 01111 1 2 357
Q ss_pred EEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC-CCC
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-HSA 373 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~ 373 (479)
+.++.++.|..+|.++++ .+.... ......+.. ++..++.++.++.|..+|.++ ++.+..... ...
T Consensus 243 ~~~~~~g~l~~~d~~tG~--~~w~~~--~~~~~~~~~---~~~~l~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~ 309 (376)
T 3q7m_A 243 FALAYNGNLTALDLRSGQ--IMWKRE--LGSVNDFIV---DGNRIYLVDQNDRVMALTIDG------GVTLWTQSDLLHR 309 (376)
T ss_dssp EEECTTSCEEEEETTTCC--EEEEEC--CCCEEEEEE---ETTEEEEEETTCCEEEEETTT------CCEEEEECTTTTS
T ss_pred EEEecCcEEEEEECCCCc--EEeecc--CCCCCCceE---ECCEEEEEcCCCeEEEEECCC------CcEEEeecccCCC
Confidence 777889999999999988 343332 223445554 356788888899999999988 666665542 222
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
.+...... +.. |..++.+|.|.++|..++
T Consensus 310 ~~~~~~~~--~~~-l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 310 LLTSPVLY--NGN-LVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp CCCCCEEE--TTE-EEEECTTSEEEEEETTTC
T ss_pred cccCCEEE--CCE-EEEEeCCCeEEEEECCCC
Confidence 23333332 343 457888999999999884
No 247
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.49 E-value=9.8e-06 Score=77.42 Aligned_cols=239 Identities=9% Similarity=0.009 Sum_probs=133.0
Q ss_pred CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec----------CCCcEEEEecCCCcccc
Q 011709 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------KDKSVVLWSIQDHITSS 232 (479)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s----------~dg~i~vwd~~~~~~~~ 232 (479)
+.|.++|..+. +.+..+..-.. - .++++|+|++|+.+. .++.|.++|..+.....
T Consensus 99 ~~VsVID~~t~------------~vv~~I~vG~~--P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~ 163 (426)
T 3c75_H 99 TQQFVIDGSTG------------RILGMTDGGFL--P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA 163 (426)
T ss_dssp EEEEEEETTTT------------EEEEEEEECSS--C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred CeEEEEECCCC------------EEEEEEECCCC--C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE
Confidence 69999999987 44444443332 3 899999999888775 46789999997654321
Q ss_pred ccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe-c-CCeEEEEeCCC
Q 011709 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-D-DSCLILWDARV 310 (479)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~-dg~i~iwd~~~ 310 (479)
..... . ..... .......+.|+|++. +++.+. . ++.|.+.|+.+
T Consensus 164 ~I~v~-----g--------------------------~~r~~--~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t 209 (426)
T 3c75_H 164 DIELP-----D--------------------------APRFL--VGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEG 209 (426)
T ss_dssp EEEET-----T--------------------------CCCCC--BSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTT
T ss_pred EEECC-----C--------------------------ccccc--cCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCC
Confidence 11000 0 00000 012245779999995 455544 3 68999999999
Q ss_pred CCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCcee----eecCCCCcE-EEEEEecCCC
Q 011709 311 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN----KFEGHSAAV-LCVQWSPDKS 385 (479)
Q Consensus 311 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~----~~~~h~~~v-~~l~~~p~~~ 385 (479)
++ .+..+.... . ....|.....+++.+.||.+.+.++.. ++... .+.....++ ..+.|.+++.
T Consensus 210 ~k--vv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~------~~v~~~~~~~~~v~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 210 KT--FDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFAD------GETKVTNTEVFHTEDELLINHPAFSLRSG 277 (426)
T ss_dssp TE--EEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCT------TCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred Ce--EEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCC------CcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence 88 555554221 1 233442346777778888888888843 23221 122112221 2357899988
Q ss_pred cEEEEEeCCCCEEEEeCCCCCccccCC-CCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCcc-----ccceeEE
Q 011709 386 SVFGSSAEDGLLNIWDYEKVGKKVEQG-PRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLS-----YANKKIK 459 (479)
Q Consensus 386 ~llas~s~Dg~v~iwd~~~~~~~~~~~-~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~-----~~d~~i~ 459 (479)
.++++ +..+.|.+.|+.......... .......-..-+...| ...++++|++..++.+..... ..++.|.
T Consensus 278 ~~~~~-s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g---~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 278 RLVWP-TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGG---WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp EEEEE-BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECS---SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred EEEEE-eCCCcEEEEeccCCceEEeeeeeeccccccccccccCC---ceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 76544 567899999986532111100 0000000000111111 124689999887666532000 0145777
Q ss_pred EEeeccc
Q 011709 460 IYCHLEA 466 (479)
Q Consensus 460 i~~~~~~ 466 (479)
+.|....
T Consensus 354 VID~~T~ 360 (426)
T 3c75_H 354 VLNAETG 360 (426)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 7775443
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.49 E-value=1.7e-05 Score=69.64 Aligned_cols=192 Identities=10% Similarity=0.040 Sum_probs=117.1
Q ss_pred ceeeeeecCCCCcEEEecCCC--cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec
Q 011709 198 AEFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN 275 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (479)
-..+|.|+ ++.++.+.+.+| .|+++|+.+++.... +.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~----------------------------------------~~ 82 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ----------------------------------------IE 82 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE----------------------------------------EE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE----------------------------------------Ee
Confidence 45789998 666667777766 899999987654321 11
Q ss_pred CCCCce--EEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEec
Q 011709 276 GHEDTV--EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 353 (479)
Q Consensus 276 ~h~~~v--~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~ 353 (479)
-. ... ..++. .+..+++..-.++.+.+||..+.+ .+..+.... .-..++ + ++..|+.+..++.|.++|.
T Consensus 83 l~-~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~--~~~ti~~~~-eG~glt--~-dg~~L~~SdGs~~i~~iDp 153 (262)
T 3nol_A 83 LG-KRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLR--QVRSFNYDG-EGWGLT--H-NDQYLIMSDGTPVLRFLDP 153 (262)
T ss_dssp CC-TTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCC--EEEEEECSS-CCCCEE--E-CSSCEEECCSSSEEEEECT
T ss_pred cC-CccceeEEEE--eCCEEEEEEeeCCEEEEEECccCc--EEEEEECCC-CceEEe--c-CCCEEEEECCCCeEEEEcC
Confidence 11 122 23444 354666666778999999999988 566654322 223444 3 4555665556788999999
Q ss_pred CCCCCCCCCCceeeecCC--C---CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC
Q 011709 354 RNLTSNGVGSPINKFEGH--S---AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (479)
Q Consensus 354 ~~~~~~~~~~~~~~~~~h--~---~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g 428 (479)
.+ .+.+..+.-. . ..++.+.|. +|. ++|..-.+..|.+.|..++ +.....+...-.+.. ......
T Consensus 154 ~T------~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~-~~~~~~ 223 (262)
T 3nol_A 154 ES------LTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETG-KVTGIIDLNGILAEA-GPLPSP 223 (262)
T ss_dssp TT------CSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTC-BEEEEEECTTGGGGS-CSCCSS
T ss_pred CC------CeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCC-cEEEEEECCcCcccc-ccccCc
Confidence 88 5566555432 1 345568887 564 7877767889999999884 332221111000000 000000
Q ss_pred CCCceeEEEecCCCeeeecCC
Q 011709 429 HSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 429 h~~~~~~~~sp~~~~l~~~~~ 449 (479)
-.-...++|+|++..|+.+|.
T Consensus 224 ~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 224 IDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CCCEEEEEEETTTTEEEEEET
T ss_pred CCceEEEEEcCCCCEEEEECC
Confidence 112488999999888888777
No 249
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.48 E-value=0.00061 Score=62.67 Aligned_cols=183 Identities=5% Similarity=-0.034 Sum_probs=113.0
Q ss_pred CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE-EEecCCCcEEEEecCCCccccccCCccccc
Q 011709 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAKS 241 (479)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 241 (479)
..|+..|+.+. .....+..-. ...+++|++.++.| ++-..++.|..+++.......
T Consensus 10 ~~I~~i~~~~~------------~~~~~~~~~~--~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~--------- 66 (316)
T 1ijq_A 10 HEVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--------- 66 (316)
T ss_dssp SSEEEEETTSC------------CCEEEECSCS--SEEEEEEETTTTEEEEEETTTTEEEEEEC----------------
T ss_pred CeEEEEECCCc------------ceEehhcCCC--ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc---------
Confidence 46888888765 2222222222 35799999876544 455567899999886410000
Q ss_pred CCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeecc
Q 011709 242 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 321 (479)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 321 (479)
.....+.........+++.+.+..++++-...+.|.+.|+.... .......
T Consensus 67 ---------------------------~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~~~ 117 (316)
T 1ijq_A 67 ---------------------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRE 117 (316)
T ss_dssp ----------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEEC
T ss_pred ---------------------------ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc--eEEEEEC
Confidence 00011111223457889987665777777788999999987544 2222222
Q ss_pred CCCCeEEEEecCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCCceeee-cCCCCcEEEEEEecCCCcEEEEEeCCCCEEE
Q 011709 322 HDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI 399 (479)
Q Consensus 322 ~~~~v~~l~~sp~~~~~l~tgs~d-g~I~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~llas~s~Dg~v~i 399 (479)
.......++++|.++.++++.... +.|..+++.. .....+ ...-...+.|+++|++..|+++-+..+.|..
T Consensus 118 ~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-------~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 118 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (316)
T ss_dssp TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-------CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence 345678999998445455554433 7888888763 333333 2233567899999988878877777889999
Q ss_pred EeCCC
Q 011709 400 WDYEK 404 (479)
Q Consensus 400 wd~~~ 404 (479)
+|+..
T Consensus 191 ~d~dg 195 (316)
T 1ijq_A 191 IDVNG 195 (316)
T ss_dssp EETTS
T ss_pred EecCC
Confidence 99864
No 250
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.44 E-value=3e-05 Score=71.71 Aligned_cols=214 Identities=9% Similarity=0.026 Sum_probs=129.5
Q ss_pred cEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCccccc
Q 011709 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA 233 (479)
Q Consensus 154 ~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 233 (479)
..|..++.++.|..+|.. + ........+.. .+.++...+++. |+.++.++.|..+|.. +...
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g------------~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~-- 169 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-G------------TEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEK-- 169 (330)
T ss_dssp TEEEEECTTSEEEEECTT-S------------CEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECTT-SCEE--
T ss_pred CEEEEEecCCEEEEEcCC-C------------CEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEe--
Confidence 356778888899999987 5 22223333332 356677776665 6667778999999886 3221
Q ss_pred cCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCC
Q 011709 234 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS 313 (479)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 313 (479)
..+......+.++...+++ . +..++ +.|..+| .++.
T Consensus 170 --------------------------------------~~~~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~~d-~~g~- 205 (330)
T 3hxj_A 170 --------------------------------------WRFKTNDAITSAASIGKDG-T-IYFGS--DKVYAIN-PDGT- 205 (330)
T ss_dssp --------------------------------------EEEECSSCCCSCCEECTTC-C-EEEES--SSEEEEC-TTSC-
T ss_pred --------------------------------------EEEecCCCceeeeEEcCCC-E-EEEEe--CEEEEEC-CCCc-
Confidence 1111223345566666666 4 44444 7899999 6655
Q ss_pred CceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeC
Q 011709 314 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE 393 (479)
Q Consensus 314 ~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~ 393 (479)
...........+.++...+ ++ .|..++.++.|..+|.. +..+..+......+.++.+.+++. ++ .++.
T Consensus 206 -~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t~ 273 (330)
T 3hxj_A 206 -EKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINPD-------GTEKWRFKTGKRIESSPVIGNTDT-IY-FGSY 273 (330)
T ss_dssp -EEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECTT-------SCEEEEEECSSCCCSCCEECTTSC-EE-EECT
T ss_pred -EEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECCC-------CCEeEEeeCCCCccccceEcCCCe-EE-EecC
Confidence 3444444456678888887 55 45667778888888743 455665555544455666766665 44 6777
Q ss_pred CCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeC-CCCCceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 394 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 394 Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~-gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
+|.|..+|. . +.. +.... +...+.++...+++...+.+ . +|.+++...
T Consensus 274 ~ggl~~~d~-~-g~~--------------~~~~~~~~~~~~~~~~d~~g~l~~gt-~-----~G~~~~~~~ 322 (330)
T 3hxj_A 274 DGHLYAINP-D-GTE--------------KWNFETGSWIIATPVIDENGTIYFGT-R-----NGKFYALFN 322 (330)
T ss_dssp TCEEEEECT-T-SCE--------------EEEEECSSCCCSCCEECTTCCEEEEC-T-----TSCEEEEEC
T ss_pred CCCEEEECC-C-CcE--------------EEEEEcCCccccceEEcCCCEEEEEc-C-----CCeEEEEec
Confidence 888999985 3 221 12121 22235667777777766544 4 456665543
No 251
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.42 E-value=5.5e-05 Score=71.61 Aligned_cols=222 Identities=12% Similarity=0.046 Sum_probs=118.4
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccC--------CCceeeeeecCCCCcEEEecCCCcEEEEe
Q 011709 153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ--------DNAEFALAMCPTEPYVLSGGKDKSVVLWS 224 (479)
Q Consensus 153 ~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~--------~~~v~~l~~s~~~~~l~s~s~dg~i~vwd 224 (479)
+..|.+++.++.|+.+|..+++.. ....... ...+ ......++..++.++.++.|..+|
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~------------W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~~~~g~l~a~d 119 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEI------------WSVSLAEKDGWFSKEPALL-SGGVTVSGGHVYIGSEKAQVYALN 119 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEE------------EEEECCC---CCSCCCCCE-EEEEEEETTEEEEEETTSEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCcee------------eeecCccccccccccCccc-ccCceEeCCEEEEEcCCCEEEEEE
Confidence 346777788889999999887322 2222211 1112 111122356788888899999999
Q ss_pred cCCCccccccCCccccc--CCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCce-----EEEEEeeCCCcEEEEE
Q 011709 225 IQDHITSSATDPATAKS--AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV-----EDVTFCPSSAQEFCSV 297 (479)
Q Consensus 225 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~ 297 (479)
..++............. +......+... ...+.+..++..+++.+.......... ...... + ..++.+
T Consensus 120 ~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~--~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~--~~v~~g 194 (376)
T 3q7m_A 120 TSDGTVAWQTKVAGEALSRPVVSDGLVLIH--TSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F--GAAVVG 194 (376)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEETTEEEEE--CTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T--TEEEEC
T ss_pred CCCCCEEEEEeCCCceEcCCEEECCEEEEE--cCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C--CEEEEE
Confidence 98775532221110000 00001111111 123344444555554444333221110 112222 2 357778
Q ss_pred ecCCeEEEEeCCCCCCCceeeeccCCC-C---eEE---EEecC-CCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec
Q 011709 298 GDDSCLILWDARVGTSPVIKVEKAHDA-D---LHC---VDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-~---v~~---l~~sp-~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 369 (479)
+.++.|..+|..+++ .+........ . +.. +.-.| ..+..++.++.++.|..+|.++ ++.+....
T Consensus 195 ~~~g~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t------G~~~w~~~ 266 (376)
T 3q7m_A 195 GDNGRVSAVLMEQGQ--MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS------GQIMWKRE 266 (376)
T ss_dssp CTTTEEEEEETTTCC--EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT------CCEEEEEC
T ss_pred cCCCEEEEEECCCCc--EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC------CcEEeecc
Confidence 889999999999888 3333321110 0 000 11111 0246778888899999999988 66665554
Q ss_pred CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 370 ~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
. .....+... +..+ ..++.++.|..+|..++
T Consensus 267 ~--~~~~~~~~~--~~~l-~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 267 L--GSVNDFIVD--GNRI-YLVDQNDRVMALTIDGG 297 (376)
T ss_dssp C--CCEEEEEEE--TTEE-EEEETTCCEEEEETTTC
T ss_pred C--CCCCCceEE--CCEE-EEEcCCCeEEEEECCCC
Confidence 2 234455443 4434 46777899999999884
No 252
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.41 E-value=0.0006 Score=62.74 Aligned_cols=211 Identities=9% Similarity=-0.024 Sum_probs=125.0
Q ss_pred cCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE-EEecC
Q 011709 138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGK 216 (479)
Q Consensus 138 ~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l-~s~s~ 216 (479)
..-..+..+.|.+.++.++.+-...+.|+.++....... ......+...-. ...++++.+.++.| ++-..
T Consensus 27 ~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~--------~~~~~~~~~~~~-~p~glavd~~~~~ly~~d~~ 97 (316)
T 1ijq_A 27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTVISRDIQ-APDGLAVDWIHSNIYWTDSV 97 (316)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEEECSSCS-CCCEEEEETTTTEEEEEETT
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC--------cccEEEEeCCCC-CcCEEEEeecCCeEEEEECC
Confidence 334567899999867778888778889999998762000 011111221112 24688888755544 45566
Q ss_pred CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEE
Q 011709 217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296 (479)
Q Consensus 217 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 296 (479)
.+.|.+.++...... ...........++++.|.+..++++
T Consensus 98 ~~~I~~~~~~g~~~~----------------------------------------~~~~~~~~~P~~iavdp~~g~ly~~ 137 (316)
T 1ijq_A 98 LGTVSVADTKGVKRK----------------------------------------TLFRENGSKPRAIVVDPVHGFMYWT 137 (316)
T ss_dssp TTEEEEEETTSSSEE----------------------------------------EEEECTTCCEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCceE----------------------------------------EEEECCCCCcceEEeCCCCCEEEEE
Confidence 788999987642110 1111122456899999876566666
Q ss_pred EecC-CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcE
Q 011709 297 VGDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 375 (479)
Q Consensus 297 ~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v 375 (479)
.... +.|...++.... ........-...+.|+++|.++.+.++-+..+.|..+|+.... .+.+..........
T Consensus 138 d~~~~~~I~~~~~dG~~--~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~----~~~~~~~~~~~~~P 211 (316)
T 1ijq_A 138 DWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN----RKTILEDEKRLAHP 211 (316)
T ss_dssp ECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEEECTTTTSSE
T ss_pred ccCCCCeEEEEcCCCCC--eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc----eEEEeecCCccCCc
Confidence 5444 788888886433 1111222335678999998344555555556799999987411 11222211122346
Q ss_pred EEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 376 ~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
.++++. +.+++++....+.|..+|...+
T Consensus 212 ~giav~--~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 212 FSLAVF--EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred EEEEEE--CCEEEEEECCCCeEEEEeCCCC
Confidence 778885 3457778777889999997653
No 253
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.39 E-value=0.00033 Score=64.18 Aligned_cols=239 Identities=10% Similarity=0.050 Sum_probs=132.2
Q ss_pred eeEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE
Q 011709 132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211 (479)
Q Consensus 132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l 211 (479)
+....+.-......++|.+ +++++++-..++.|..||..... ...+.. . ....++++.++|+++
T Consensus 23 ~~~~~~p~~~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~-------------~~~~~~-~-~~p~gia~~~dG~l~ 86 (306)
T 2p4o_A 23 KIITSFPVNTFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQ-------------QIHATV-E-GKVSGLAFTSNGDLV 86 (306)
T ss_dssp EEEEEECTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCE-------------EEEEEC-S-SEEEEEEECTTSCEE
T ss_pred eEeEeCCCCCCcceEEECC-CCCEEEEeCCCCeEEEECCCCce-------------EEEEeC-C-CCceeEEEcCCCcEE
Confidence 3445554446678899999 77788887788999999876531 111111 1 246899999999865
Q ss_pred EEecCC-C-cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeC
Q 011709 212 LSGGKD-K-SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS 289 (479)
Q Consensus 212 ~s~s~d-g-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 289 (479)
++.... + .|..+|..++..... ..+ ........++..+.
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~--------------------------------------~~~-~~~~~~~g~~~~~~ 127 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETL--------------------------------------LTL-PDAIFLNGITPLSD 127 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEE--------------------------------------EEC-TTCSCEEEEEESSS
T ss_pred EEeccCCcceEEEEcCCCCeEEEE--------------------------------------EeC-CCccccCcccccCC
Confidence 554332 2 466666544322100 000 01112234444444
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCCCcee--------eeccCCCCeEEEEecCCCCcE-EEEEeCCCcEEEEecCCCCCCC
Q 011709 290 SAQEFCSVGDDSCLILWDARVGTSPVIK--------VEKAHDADLHCVDWNPLDDNL-ILTGSADNSVRMFDRRNLTSNG 360 (479)
Q Consensus 290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~v~~l~~sp~~~~~-l~tgs~dg~I~iwd~~~~~~~~ 360 (479)
+ ..+++-..++.|.++|...+...... .....-...+.+ +| ++.. +++-...+.|..||+.....
T Consensus 128 ~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~lyv~d~~~~~I~~~~~~~~g~-- 201 (306)
T 2p4o_A 128 T-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLYVSNTEKMLLLRIPVDSTDK-- 201 (306)
T ss_dssp S-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEEEEETTTTEEEEEEBCTTSC--
T ss_pred C-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEEEEeCCCCEEEEEEeCCCCC--
Confidence 4 45555556888999998654210110 000111234556 77 6654 45555578999999874100
Q ss_pred CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeC-CCCCceeEEEe-
Q 011709 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHSPSSSIKFV- 438 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~-gh~~~~~~~~s- 438 (479)
......+. .......++++++|. ++++....+.|.++|... ... .+.... +-..+++++|.
T Consensus 202 -~~~~~~~~-~~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G--~~~------------~~~~~~~~~~~p~~~a~~g 264 (306)
T 2p4o_A 202 -PGEPEIFV-EQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR--STT------------IIAQAEQGVIGSTAVAFGQ 264 (306)
T ss_dssp -BCCCEEEE-ESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC--CEE------------EEECGGGTCTTEEEEEECC
T ss_pred -CCccEEEe-ccCCCCCeEECCCCC-EEEEeCCCCeEEEECCCC--CEE------------EEeecccccCCceEEEEec
Confidence 01111111 113456789999997 676776678899998642 111 011111 11336889998
Q ss_pred --cCCCeeeecC
Q 011709 439 --LRESCLVDNN 448 (479)
Q Consensus 439 --p~~~~l~~~~ 448 (479)
|++..|+.+.
T Consensus 265 ~~~d~~~LyVt~ 276 (306)
T 2p4o_A 265 TEGDCTAIYVVT 276 (306)
T ss_dssp STTTTTEEEEEE
T ss_pred ccCCCCEEEEEC
Confidence 8876555543
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.38 E-value=6.3e-05 Score=65.98 Aligned_cols=194 Identities=6% Similarity=-0.024 Sum_probs=118.6
Q ss_pred ceeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC
Q 011709 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (479)
-..+|.|+ ++.+..+.+.+|.|+++|+.+++..... +..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---------------------------------------l~~- 94 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME---------------------------------------RLG- 94 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE---------------------------------------ECT-
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE---------------------------------------CCC-
Confidence 34688887 3567778888899999999876543211 111
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~ 357 (479)
...-..+++ .+..+++..-.++.+.+||..+.+ .+..+... ..-..+++ ++..|+.+..++.|+++|..+
T Consensus 95 ~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~--~~~ti~~~-~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T-- 164 (268)
T 3nok_A 95 NIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQ--RERTTRYS-GEGWGLCY---WNGKLVRSDGGTMLTFHEPDG-- 164 (268)
T ss_dssp TCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTE--EEEEEECS-SCCCCEEE---ETTEEEEECSSSEEEEECTTT--
T ss_pred CcceeEEEE--eCCEEEEEEccCCEEEEEECCcCc--EEEEEeCC-CceeEEec---CCCEEEEECCCCEEEEEcCCC--
Confidence 111123444 454677777789999999999988 56655432 22245554 556777777789999999988
Q ss_pred CCCCCCceeeecC--CC---CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCc
Q 011709 358 SNGVGSPINKFEG--HS---AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPS 432 (479)
Q Consensus 358 ~~~~~~~~~~~~~--h~---~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~ 432 (479)
.+.+.++.- +. ..++.+.|. +|. ++|..-.+..|.+.|..++ +.....+...-.+.........-.-.
T Consensus 165 ----~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~vl 237 (268)
T 3nok_A 165 ----FALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATG-TVVGVIDASALTRAVAGQVTNPEAVL 237 (268)
T ss_dssp ----CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTCCE
T ss_pred ----CeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCC-cEEEEEECCCCcccccccccCcCCce
Confidence 556655543 22 245678887 564 7877767889999999884 32221111000000000000000124
Q ss_pred eeEEEecCCCeeeecCC
Q 011709 433 SSIKFVLRESCLVDNNH 449 (479)
Q Consensus 433 ~~~~~sp~~~~l~~~~~ 449 (479)
..++|+|++..|+.+|.
T Consensus 238 NGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 238 NGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEECTTTCCEEEEET
T ss_pred EEEEEcCCCCEEEEeCC
Confidence 88999998877777776
No 255
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.35 E-value=0.0015 Score=62.32 Aligned_cols=183 Identities=5% Similarity=-0.036 Sum_probs=115.1
Q ss_pred CcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE-EecCCCcEEEEecCCCccccccCCccccc
Q 011709 163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKS 241 (479)
Q Consensus 163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 241 (479)
..|+..++... ........ .. .+.+|+|++.++.|. +-...+.|..+++.......
T Consensus 92 ~~I~~i~l~~~------------~~~~~~~~-~~-~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~--------- 148 (400)
T 3p5b_L 92 HEVRKMTLDRS------------EYTSLIPN-LR-NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--------- 148 (400)
T ss_dssp TEEEEECTTSC------------SCEEEECS-CS-CEEEEEEETTTTEEEEEETTTTEEEEEEC------C---------
T ss_pred ceeEEEccCCc------------ceeEeccc-cC-cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC---------
Confidence 57888888765 22222222 22 367999998766554 44457888888876421000
Q ss_pred CCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeecc
Q 011709 242 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 321 (479)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 321 (479)
...............+++.+.+.+++++-...+.|.+.|+.... .......
T Consensus 149 ---------------------------~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~--~~~l~~~ 199 (400)
T 3p5b_L 149 ---------------------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRE 199 (400)
T ss_dssp ---------------------------CCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS--EEEEEEC
T ss_pred ---------------------------cceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc--eEEEEeC
Confidence 00012222334678899988655777887788899999987655 2222333
Q ss_pred CCCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCCCCCCCCCCceeee-cCCCCcEEEEEEecCCCcEEEEEeCCCCEEE
Q 011709 322 HDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI 399 (479)
Q Consensus 322 ~~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~llas~s~Dg~v~i 399 (479)
.......|+++|..+.++++-.. .+.|...++.. .....+ ...-...+.|++++++..|+++-+..+.|..
T Consensus 200 ~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG-------~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 200 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 272 (400)
T ss_dssp SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS-------CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC-------CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence 44557899999944545554433 37899888874 222222 3333578899999988878777777888999
Q ss_pred EeCCC
Q 011709 400 WDYEK 404 (479)
Q Consensus 400 wd~~~ 404 (479)
+|+..
T Consensus 273 ~d~dG 277 (400)
T 3p5b_L 273 IDVNG 277 (400)
T ss_dssp EETTS
T ss_pred EeCCC
Confidence 99864
No 256
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.32 E-value=3.9e-05 Score=78.53 Aligned_cols=252 Identities=8% Similarity=0.016 Sum_probs=130.5
Q ss_pred EEEecCCCCcEEEEEeCCC-----------cEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEE
Q 011709 145 RIRELPQNTKIVATHTDSP-----------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s 213 (479)
.+++.+.++.+++.|+.+. .+.+||..+.. ......+.........++++..+++.++.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~----------w~~~~~~~~~~~~~~~~~~~~~~g~lyv~ 259 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI----------VSDRTVTVTKHDMFCPGISMDGNGQIVVT 259 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC----------BCCCEEEECSCCCSSCEEEECTTSCEEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc----------EEeCcccCCCCCCccccccCCCCCCEEEe
Confidence 4556665778888887643 58889988762 23333343322222345788889999999
Q ss_pred ecC-CCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCc
Q 011709 214 GGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292 (479)
Q Consensus 214 ~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 292 (479)
|+. +..+.+||..+..-... ..+... ..-.+++..+++ .
T Consensus 260 GG~~~~~v~~yd~~t~~W~~~--------------------------------------~~~~~~-R~~~s~~~~~dg-~ 299 (656)
T 1k3i_A 260 GGNDAKKTSLYDSSSDSWIPG--------------------------------------PDMQVA-RGYQSSATMSDG-R 299 (656)
T ss_dssp CSSSTTCEEEEEGGGTEEEEC--------------------------------------CCCSSC-CSSCEEEECTTS-C
T ss_pred CCCCCCceEEecCcCCceeEC--------------------------------------CCCCcc-ccccceEEecCC-e
Confidence 884 56899999875321100 000001 111234555667 6
Q ss_pred EEEEEe-cC-----CeEEEEeCCCCCCCceeee--ccCCCCeEEEEecCCCCcEEEEEeCCC---------cEEEEecCC
Q 011709 293 EFCSVG-DD-----SCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADN---------SVRMFDRRN 355 (479)
Q Consensus 293 ~l~s~~-~d-----g~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~l~tgs~dg---------~I~iwd~~~ 355 (479)
+++.|+ .+ ..+.+||..+..+..+... ......-....+.. ++..++.|+.+| .+..||...
T Consensus 300 iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~ 378 (656)
T 1k3i_A 300 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSG 378 (656)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec-CCceEEEECCCCcEEEecCccceeeeecCC
Confidence 777777 34 4689999988763221000 00000000012223 455555565544 467788776
Q ss_pred CCCCCCCCceeeecCC---------CCcEEEEEEecCCCcEEEEEeCCC-----------CEEEEeCCCCCccccCCCCC
Q 011709 356 LTSNGVGSPINKFEGH---------SAAVLCVQWSPDKSSVFGSSAEDG-----------LLNIWDYEKVGKKVEQGPRT 415 (479)
Q Consensus 356 ~~~~~~~~~~~~~~~h---------~~~v~~l~~~p~~~~llas~s~Dg-----------~v~iwd~~~~~~~~~~~~~~ 415 (479)
.........+ ...-.++.|...+..|++.|+.++ .|.+||..... -.... .
T Consensus 379 ------~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~-W~~~~--~ 449 (656)
T 1k3i_A 379 ------SGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP-NTVFA--S 449 (656)
T ss_dssp ------TCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC-EEEEC--T
T ss_pred ------cceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC-eeEEc--c
Confidence 2222211111 112345556554555888888543 56777776521 10000 0
Q ss_pred CCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCcc------ccceeEEEEeec
Q 011709 416 TNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLS------YANKKIKIYCHL 464 (479)
Q Consensus 416 ~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~------~~d~~i~i~~~~ 464 (479)
...| ..+.-.++...|++..++.||.... .....+.+|+..
T Consensus 450 ~~mp--------~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~ 496 (656)
T 1k3i_A 450 NGLY--------FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE 496 (656)
T ss_dssp TCCS--------SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred CCCC--------CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC
Confidence 0000 0011245566789999999886311 112567888754
No 257
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.31 E-value=6.1e-05 Score=65.45 Aligned_cols=205 Identities=9% Similarity=-0.034 Sum_probs=119.5
Q ss_pred cEEEeccCCCceeeeeecCCCCcEEEecCCC--cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCC
Q 011709 188 DLILTGHQDNAEFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265 (479)
Q Consensus 188 ~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (479)
+..+......-..+|.|+. +.++.+.+.+| .|+.+|+.++......
T Consensus 12 ~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~------------------------------- 59 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA------------------------------- 59 (243)
T ss_dssp EEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-------------------------------
T ss_pred EEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-------------------------------
Confidence 3444222333456899986 55666666654 8999999876543211
Q ss_pred CCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC
Q 011709 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345 (479)
Q Consensus 266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d 345 (479)
.+..+ .--..+++. +..++...-.++.+.+||..+.+ .+..+.... .-..++. ++..|+.+..+
T Consensus 60 -------~l~~~-~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~--~~~ti~~~~-~Gwglt~---dg~~L~vSdgs 123 (243)
T 3mbr_X 60 -------EVPPP-YFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT--PRARFRYPG-EGWALTS---DDSHLYMSDGT 123 (243)
T ss_dssp -------ECCTT-CCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE--EEEEEECSS-CCCEEEE---CSSCEEEECSS
T ss_pred -------eCCCC-cceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc--EEEEEeCCC-CceEEee---CCCEEEEECCC
Confidence 11111 111234443 44677777789999999999988 566654322 2345554 45555656668
Q ss_pred CcEEEEecCCCCCCCCCCceeeecCCC-----CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCC
Q 011709 346 NSVRMFDRRNLTSNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 420 (479)
Q Consensus 346 g~I~iwd~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 420 (479)
+.|.++|..+ .+.+.++.-.. ..++-+.|. ++. ++|..-.+..|.+.|..++ +.....+...-.+.
T Consensus 124 ~~l~~iDp~t------~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG-~V~~~idl~~l~~~ 194 (243)
T 3mbr_X 124 AVIRKLDPDT------LQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASG-KVVAWIDLQALVPD 194 (243)
T ss_dssp SEEEEECTTT------CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTC-BEEEEEECGGGSTT
T ss_pred CeEEEEeCCC------CeEEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCC-CEEEEEECCcCccc
Confidence 8999999988 45555554321 345667776 454 7777766789999999884 33222111100000
Q ss_pred eeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 421 GLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 421 ~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
.-......-.-...++|+|++..|+.+|.
T Consensus 195 ~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 195 ADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred cccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 00000000012488999998887777776
No 258
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.31 E-value=0.0011 Score=63.29 Aligned_cols=212 Identities=8% Similarity=-0.048 Sum_probs=126.3
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEec
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGG 215 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s 215 (479)
+.....+..|+|.+.++.++.+-...+.|+.+++...... .....+....-....+|++.+.++ +.++-.
T Consensus 108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---------~~~~~~~~~~~~~p~glavD~~~~~lY~~d~ 178 (400)
T 3p5b_L 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 178 (400)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------------CCCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---------CcceEEEeCCCCCcccEEEEecCCceEEEEC
Confidence 4455678899999977777777777889999998753100 011122221112356888887544 445555
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
..+.|.+.+++..... ..+.........|++.|.+..+++
T Consensus 179 ~~~~I~~~~~~g~~~~----------------------------------------~l~~~~~~~P~~iavdp~~g~ly~ 218 (400)
T 3p5b_L 179 VLGTVSVADTKGVKRK----------------------------------------TLFRENGSKPRAIVVDPVHGFMYW 218 (400)
T ss_dssp TTTEEEEECTTTCSEE----------------------------------------EEEECSSCCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEeCCCCceE----------------------------------------EEEeCCCCCcceEEEecccCeEEE
Confidence 6788888887643211 111222335789999997656666
Q ss_pred EEec-CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCc
Q 011709 296 SVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374 (479)
Q Consensus 296 s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 374 (479)
+-.. .+.|...++.... ........-...+.|+++|..+.+.++-...+.|..+|+.... ...+......-..
T Consensus 219 td~~~~~~I~~~~~dG~~--~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~----~~~~~~~~~~l~~ 292 (400)
T 3p5b_L 219 TDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN----RKTILEDEKRLAH 292 (400)
T ss_dssp EECSSSCCEEEEETTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC----CEEEEECSSTTSS
T ss_pred EeCCCCCEEEEEeCCCCc--cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc----cEEEEeCCCCCCC
Confidence 5433 4788888887544 2222223335678999998444444554556789999987421 1112211122234
Q ss_pred EEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
..+|++. +..++.+....+.|..+|..++
T Consensus 293 P~gl~v~--~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 293 PFSLAVF--EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEEEEEE--TTEEEEEESSSCSEEEEESSSC
T ss_pred CEEEEEe--CCEEEEecCCCCeEEEEEcCCC
Confidence 5677773 4457878877889999996653
No 259
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.30 E-value=6.3e-05 Score=76.95 Aligned_cols=176 Identities=10% Similarity=0.094 Sum_probs=89.2
Q ss_pred cEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecC--CCCcEEEecC------CCcEEEEec
Q 011709 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGGK------DKSVVLWSI 225 (479)
Q Consensus 154 ~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~--~~~~l~s~s~------dg~i~vwd~ 225 (479)
..|+.++.|+.|+.+|..+++ ....+..........+.-+| .+..++.+.. +|.|..+|.
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~------------~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~ 185 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGK------------AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDA 185 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCC------------EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEET
T ss_pred CEEEEEcCCCEEEEEECCCCC------------EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEEC
Confidence 467788889999999999883 33333221100011111122 1334555543 589999999
Q ss_pred CCCccccccCCcccc-cCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCC---
Q 011709 226 QDHITSSATDPATAK-SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--- 301 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--- 301 (479)
.++...-........ ........+... ...+. ...+....++......+++.+.. .+++.++.++
T Consensus 186 ~tG~~~W~~~~~~~~p~~~~~~~~~~~~-------~~~~~---g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w 254 (668)
T 1kv9_A 186 DTGKLAWRFYTVPGDPALPYEHPELREA-------AKTWQ---GDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPW 254 (668)
T ss_dssp TTCCEEEEEESSCCCTTSCCSSHHHHHH-------HTTCC---SSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESS
T ss_pred CCCcEEEEecccCCCCCccccccccccc-------cccCC---ccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCcc
Confidence 887654332210000 000000000000 00000 00000111122223456788876 4666676665
Q ss_pred ----------------eEEEEeCCCCCCCceeeecc--CC-------CCeEEEEecCCCCc---EEEEEeCCCcEEEEec
Q 011709 302 ----------------CLILWDARVGTSPVIKVEKA--HD-------ADLHCVDWNPLDDN---LILTGSADNSVRMFDR 353 (479)
Q Consensus 302 ----------------~i~iwd~~~~~~~~~~~~~~--~~-------~~v~~l~~sp~~~~---~l~tgs~dg~I~iwd~ 353 (479)
.|..+|.++++ .+..+.. |. .+.....+.. ++. +++.++.+|.++++|.
T Consensus 255 ~~~~~~~~~gd~l~~~~v~AlD~~tG~--~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~ 331 (668)
T 1kv9_A 255 NREVRSPGGGDNLYLSSILAIRPDTGK--LAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDR 331 (668)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEET
T ss_pred ccCCCCCCCCCceeeeeEEEEcCCCCc--eeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEEC
Confidence 49999999998 4433332 22 2222233333 454 7899999999999999
Q ss_pred CC
Q 011709 354 RN 355 (479)
Q Consensus 354 ~~ 355 (479)
++
T Consensus 332 ~t 333 (668)
T 1kv9_A 332 TN 333 (668)
T ss_dssp TT
T ss_pred CC
Confidence 88
No 260
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.28 E-value=0.00096 Score=61.34 Aligned_cols=202 Identities=5% Similarity=-0.054 Sum_probs=124.9
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecCCCcE
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSV 220 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~dg~i 220 (479)
.+..+.|.+.++.++.+-...+.|+.++...... ....+...-. ...++++.+.+. ..++-...+.|
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-----------~~~~~~~~l~-~p~glavd~~~g~ly~~d~~~~~I 103 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-----------VQNVVVSGLL-SPDGLACDWLGEKLYWTDSETNRI 103 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-----------CCEEEEECCS-CCCEEEEETTTTEEEEEETTTTEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-----------eEEEEcCCCC-CccEEEEEcCCCeEEEEECCCCEE
Confidence 4678899987777888877888999999876511 1111221111 245888887554 44555567889
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe-c
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-D 299 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~ 299 (479)
.+++++..... ............+++.|.+..++++-. .
T Consensus 104 ~~~~~dG~~~~----------------------------------------~l~~~~~~~P~giavdp~~g~ly~td~~~ 143 (318)
T 3sov_A 104 EVSNLDGSLRK----------------------------------------VLFWQELDQPRAIALDPSSGFMYWTDWGE 143 (318)
T ss_dssp EEEETTSCSCE----------------------------------------EEECSSCSSEEEEEEEGGGTEEEEEECSS
T ss_pred EEEECCCCcEE----------------------------------------EEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence 99988642211 111122345689999987645555542 3
Q ss_pred CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEE
Q 011709 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~ 379 (479)
.+.|...++.... ........-...+.|+++|.++.+.++=+..+.|..+|+... .......+.......++
T Consensus 144 ~~~I~r~~~dG~~--~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~------~~~~~~~~~~~~P~gla 215 (318)
T 3sov_A 144 VPKIERAGMDGSS--RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT------NRQAVVKGSLPHPFALT 215 (318)
T ss_dssp SCEEEEEETTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------SCEEEECSCCSCEEEEE
T ss_pred CCEEEEEEcCCCC--eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC------ceEEEecCCCCCceEEE
Confidence 5788888886433 122222223456899999944555555555788999998741 11112222344567788
Q ss_pred EecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 380 WSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 380 ~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+.. ..++.+-...+.|..+|..++
T Consensus 216 v~~--~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 216 LFE--DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp EET--TEEEEEETTTTEEEEEETTTC
T ss_pred EeC--CEEEEEecCCCeEEEEECCCC
Confidence 753 347777777889999998664
No 261
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.27 E-value=4.7e-06 Score=77.26 Aligned_cols=209 Identities=14% Similarity=0.096 Sum_probs=116.9
Q ss_pred EEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCCcccccc
Q 011709 155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT 234 (479)
Q Consensus 155 ~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 234 (479)
.|..++.++.|..|| .++.... ....+. ..+.++...+++. |..++.+ |..+|. ++......
T Consensus 32 ~l~v~t~~~~l~~~d-~~g~~~~------------~~~~~~-~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TDGSVKW------------FFKSGE-IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CEECSSTTTTTEEEC-TTSCEEE------------SSCGGG-EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGS
T ss_pred eEEEEcCCCEEEEEC-CCCcEEE------------EEecCC-CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEE
Confidence 466677788899999 6652211 111111 2345667766665 4445544 888886 33222111
Q ss_pred CCcccccCC--CCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCC
Q 011709 235 DPATAKSAG--SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT 312 (479)
Q Consensus 235 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 312 (479)
......... .....+... ...+.+..++.. .........+...+.++...+++ . +..++.++.|..+|.. ++
T Consensus 94 ~~~~~~~~~~~~~~~~l~v~--t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~ 167 (330)
T 3hxj_A 94 DTKKAIVSDFTIFEDILYVT--SMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GT 167 (330)
T ss_dssp CC-----CCEEEETTEEEEE--CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SC
T ss_pred ECCCCcccCceEECCEEEEE--ecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CC
Confidence 110000000 001111111 112333344444 33333444444455666666666 3 6667888999999998 65
Q ss_pred CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEe
Q 011709 313 SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 392 (479)
Q Consensus 313 ~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s 392 (479)
...........+.++...+ ++.++ .++ +.|..+| .+ +..+..+......+.++...+++. ++ .++
T Consensus 168 --~~~~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t 232 (330)
T 3hxj_A 168 --EKWRFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PD------GTEKWNFYAGYWTVTRPAISEDGT-IY-VTS 232 (330)
T ss_dssp --EEEEEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TT------SCEEEEECCSSCCCSCCEECTTSC-EE-EEE
T ss_pred --EeEEEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CC------CcEEEEEccCCcceeceEECCCCe-EE-EEc
Confidence 3444444455667777776 56544 444 8899999 55 566666666666788899988876 44 566
Q ss_pred CCCCEEEEeC
Q 011709 393 EDGLLNIWDY 402 (479)
Q Consensus 393 ~Dg~v~iwd~ 402 (479)
.++.|..+|.
T Consensus 233 ~~~gl~~~~~ 242 (330)
T 3hxj_A 233 LDGHLYAINP 242 (330)
T ss_dssp TTTEEEEECT
T ss_pred CCCeEEEECC
Confidence 6778888874
No 262
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.26 E-value=7.8e-05 Score=68.94 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=73.5
Q ss_pred ceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC----------CCcEE
Q 011709 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA----------DNSVR 349 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~----------dg~I~ 349 (479)
..+.++|++++..++++-+..+.|.+||+..........+....+ ...+++++ ++++.++... .+.|.
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~ 263 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGI 263 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEE
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEE
Confidence 356789999985456666777899999987532111122211223 78899999 7877666544 46788
Q ss_pred EEecCCCCCCCCCCceeeecCCC----CcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 350 MFDRRNLTSNGVGSPINKFEGHS----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~~h~----~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.+|.. ++.+..+.... ..++++++. ++ .|+++....+.|.++++..
T Consensus 264 ~~d~~-------G~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 264 KFDEF-------GNILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EECTT-------SCEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC--
T ss_pred EECCC-------CCEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEeccc
Confidence 88864 45565554332 356777763 44 4777777788999999865
No 263
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.24 E-value=0.00022 Score=74.06 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=112.0
Q ss_pred ceeEEEec-CCCCcEEEEEeC-CC----cEEEEECCCC-CCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 142 EVNRIREL-PQNTKIVATHTD-SP----DVLIWDVEAQ-PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 142 ~V~~l~~~-p~~~~~lat~s~-dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
.+...+|+ | ++++||-+.. +| +|+++|+.++ .... . .+.. ....++|+|||+.|+..
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--------~---~~~~----~~~~~~WspDg~~l~y~ 238 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--------D---KVSG----TNGEIVWGPDHTSLFYV 238 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--------C---CEEE----ECSCCEECSSTTEEEEE
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--------c---cccC----ceeeEEEecCCCEEEEE
Confidence 57788999 8 7777665433 33 4999999887 3110 0 1111 13478999999877766
Q ss_pred cCC-----CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec-CCCCceEEEEEee
Q 011709 215 GKD-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCP 288 (479)
Q Consensus 215 s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~ 288 (479)
..| ..|.++++.+.... ....+. ........+.|+|
T Consensus 239 ~~d~~~~~~~v~~~~lgt~~~~--------------------------------------~~lv~~~~~~~~~~~~~~Sp 280 (751)
T 2xe4_A 239 TKDETLRENKVWRHVMGKLQSE--------------------------------------DVCLYEEHNPLFSAFMYKAA 280 (751)
T ss_dssp EECTTCCEEEEEEEETTSCGGG--------------------------------------CEEEEECCCTTCEEEEEECT
T ss_pred EECCCCCCCEEEEEECCCCchh--------------------------------------cEEEEecCCCceEEEEEECC
Confidence 655 25777777543210 001121 1223456789999
Q ss_pred CCCcEEEEEec--CCeEEEEeCCCCCCCc--eeeeccCCCCeEEEEecCCCCcEEEEEeCC--C--cEEEEecCCCCCCC
Q 011709 289 SSAQEFCSVGD--DSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSAD--N--SVRMFDRRNLTSNG 360 (479)
Q Consensus 289 ~~~~~l~s~~~--dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d--g--~I~iwd~~~~~~~~ 360 (479)
++..++++... ...|.++|+.++.... ............++.|+. ++.+++....+ + .|..+|+...
T Consensus 281 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~---- 355 (751)
T 2xe4_A 281 DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQP---- 355 (751)
T ss_dssp TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTST----
T ss_pred CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCc----
Confidence 99554444432 3468889998763222 223333445567777665 55555555544 3 5666666531
Q ss_pred CCCceee-ecCCCC--cEEEEEEecCCCcEEEEEeCCCCEE--EEeC
Q 011709 361 VGSPINK-FEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLN--IWDY 402 (479)
Q Consensus 361 ~~~~~~~-~~~h~~--~v~~l~~~p~~~~llas~s~Dg~v~--iwd~ 402 (479)
..... +..|.. .+..+.+ .+.+++++...|+..+ ++|+
T Consensus 356 --~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 356 --SDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp --TCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEEC
T ss_pred --ccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEec
Confidence 11122 222333 3444444 4666888888888654 4554
No 264
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.19 E-value=0.0028 Score=65.58 Aligned_cols=184 Identities=5% Similarity=-0.040 Sum_probs=114.6
Q ss_pred CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecCCCcEEEEecCCCccccccCCcccc
Q 011709 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAK 240 (479)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 240 (479)
...|+..++... .......+.. .+.+|+|.+.+. ++++-...+.|+.+++.......
T Consensus 403 ~~~Ir~i~l~~~------------~~~~l~~~~~--~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~-------- 460 (791)
T 3m0c_C 403 RHEVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-------- 460 (791)
T ss_dssp BSSEEEECTTSC------------CCEEEECSCS--SEEEEEEETTTTEEEEEETTTTEEEEEEC---------------
T ss_pred ccceeEeeccCC------------cceeeecCCC--ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc--------
Confidence 346777777654 2222233322 357999998655 44455566888888886421100
Q ss_pred cCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeec
Q 011709 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320 (479)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 320 (479)
.....+.........|++.+.+.+++++-...+.|.+.++.... ......
T Consensus 461 ----------------------------~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~--~~~l~~ 510 (791)
T 3m0c_C 461 ----------------------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFR 510 (791)
T ss_dssp -----------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEE
T ss_pred ----------------------------ceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe--EEEEEe
Confidence 00122222334567889988776788888888999999998654 222222
Q ss_pred cCCCCeEEEEecCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCCceeee-cCCCCcEEEEEEecCCCcEEEEEeCCCCEE
Q 011709 321 AHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (479)
Q Consensus 321 ~~~~~v~~l~~sp~~~~~l~tgs~d-g~I~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~llas~s~Dg~v~ 398 (479)
........|+++|..+.++++-... +.|...++.. .....+ ...-...+.|++++.+..|+++-...+.|.
T Consensus 511 ~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-------~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~ 583 (791)
T 3m0c_C 511 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 583 (791)
T ss_dssp CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-------CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEE
Confidence 3445688999999445555554333 7888888874 333333 333357899999988887877766678899
Q ss_pred EEeCCC
Q 011709 399 IWDYEK 404 (479)
Q Consensus 399 iwd~~~ 404 (479)
..|+..
T Consensus 584 ~~d~dG 589 (791)
T 3m0c_C 584 SIDVNG 589 (791)
T ss_dssp EEETTS
T ss_pred EEecCC
Confidence 999864
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.17 E-value=0.00061 Score=62.33 Aligned_cols=194 Identities=14% Similarity=0.060 Sum_probs=116.1
Q ss_pred eeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCC
Q 011709 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (479)
..+++|+++++.+++-..++.|..||...... ..+ ...
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-----------------------------------------~~~-~~~ 71 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----------------------------------------IHA-TVE 71 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----------------------------------------EEE-ECS
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCceE-----------------------------------------EEE-eCC
Confidence 57999999998777766789999998754211 111 112
Q ss_pred CceEEEEEeeCCCcEEEEEec-CC-eEEEEeCCCCCCCceeeec-cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 279 DTVEDVTFCPSSAQEFCSVGD-DS-CLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~-dg-~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
.....+++.+++ +++++... ++ .|..+|..+++ +..... ........++..+ ++..+++-..++.|+++|...
T Consensus 72 ~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 72 GKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGT--VETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp SEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSC--EEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTT
T ss_pred CCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCe--EEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCC
Confidence 357899999998 45555433 33 47777877776 222211 1223345556555 555555555688999999764
Q ss_pred CCCCCCCC-cee---------eecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEE
Q 011709 356 LTSNGVGS-PIN---------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ 425 (479)
Q Consensus 356 ~~~~~~~~-~~~---------~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 425 (479)
+. .+. .....-...+.+ +|++.+++++-...+.|..+|+...+.. ...+.+..
T Consensus 148 ------~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~---------~~~~~~~~ 210 (306)
T 2p4o_A 148 ------PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP---------GEPEIFVE 210 (306)
T ss_dssp ------TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB---------CCCEEEEE
T ss_pred ------CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC---------CccEEEec
Confidence 11 111 001111245566 8888888888888899999998752211 11122221
Q ss_pred eCCCCCceeEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 426 HAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 426 ~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
. .....+++.++|...++... .+.|.+++.
T Consensus 211 ~---~~P~gi~vd~dG~l~va~~~-----~~~V~~~~~ 240 (306)
T 2p4o_A 211 Q---TNIDDFAFDVEGNLYGATHI-----YNSVVRIAP 240 (306)
T ss_dssp S---CCCSSEEEBTTCCEEEECBT-----TCCEEEECT
T ss_pred c---CCCCCeEECCCCCEEEEeCC-----CCeEEEECC
Confidence 1 23577888888876666544 566777754
No 266
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.17 E-value=0.0027 Score=58.29 Aligned_cols=183 Identities=5% Similarity=-0.023 Sum_probs=114.2
Q ss_pred CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCc-EEEecCCCcEEEEecCCCccccccCCcccc
Q 011709 162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-VLSGGKDKSVVLWSIQDHITSSATDPATAK 240 (479)
Q Consensus 162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 240 (479)
...|+..|+..... .....+.+-. ...+++|.+.++. +.+-...+.|..+++......
T Consensus 12 ~~~I~~i~l~~~~~----------~~~~~~~~~~--~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--------- 70 (318)
T 3sov_A 12 RRDLRLVDATNGKE----------NATIVVGGLE--DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------- 70 (318)
T ss_dssp EEEEEEEETTCTTS----------CCEEEEEEEE--EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC---------
T ss_pred cCeEEEEECCCCce----------EEEEEecCCC--ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce---------
Confidence 35799999876521 1112222222 2469999986554 445556788988888643110
Q ss_pred cCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeec
Q 011709 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320 (479)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 320 (479)
...+.........+++.+.+..++++-...+.|.++++.... ......
T Consensus 71 ------------------------------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~~l~~ 118 (318)
T 3sov_A 71 ------------------------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVLFW 118 (318)
T ss_dssp ------------------------------CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEEC
T ss_pred ------------------------------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc--EEEEEe
Confidence 011111223466889987665777777778899999987644 222222
Q ss_pred cCCCCeEEEEecCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCceeee-cCCCCcEEEEEEecCCCcEEEEEeCCCCEE
Q 011709 321 AHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (479)
Q Consensus 321 ~~~~~v~~l~~sp~~~~~l~tgs-~dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~llas~s~Dg~v~ 398 (479)
........++++|..+.++++-. ..+.|...++.. .....+ ...-...+.|+|+|++..|+.+-+..+.|.
T Consensus 119 ~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~ 191 (318)
T 3sov_A 119 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-------SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 191 (318)
T ss_dssp SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-------CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-------CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence 34456789999983344444432 357888888764 222222 222346789999998887887777788999
Q ss_pred EEeCCC
Q 011709 399 IWDYEK 404 (479)
Q Consensus 399 iwd~~~ 404 (479)
.+|+..
T Consensus 192 ~~d~dG 197 (318)
T 3sov_A 192 KSNLDG 197 (318)
T ss_dssp EEETTS
T ss_pred EEcCCC
Confidence 999864
No 267
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.14 E-value=0.0018 Score=67.09 Aligned_cols=209 Identities=9% Similarity=-0.006 Sum_probs=125.7
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE-EEec
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGG 215 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l-~s~s 215 (479)
+.....+..|+|.+..+.++++-...+.|+.+++...... ......+..... ...+|++.+.++.| ++-.
T Consensus 420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~--------~~~~~vi~~~l~-~P~GLAvD~~~~~LY~tD~ 490 (791)
T 3m0c_C 420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTVISRDIQ-APDGLAVDWIHSNIYWTDS 490 (791)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEEECSSCS-CCCEEEEETTTTEEEEEET
T ss_pred ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC--------cceeEEEecCCC-CcceeeeeecCCcEEEEec
Confidence 3445667889998877777777777888999988753100 011122221222 24688888777544 4555
Q ss_pred CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 216 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
..+.|.+.++...... ..+.........|++.|.+..+++
T Consensus 491 ~~~~I~v~~ldG~~~~----------------------------------------~l~~~~l~~P~gIaVDp~~g~LYw 530 (791)
T 3m0c_C 491 VLGTVSVADTKGVKRK----------------------------------------TLFRENGSKPRAIVVDPVHGFMYW 530 (791)
T ss_dssp TTTEEEEEETTSSSEE----------------------------------------EEEECTTCCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEeCCCCeEE----------------------------------------EEEeCCCCCcceEEEecCCCCEEE
Confidence 6788999988643211 111222345789999997656666
Q ss_pred EEecC-CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee-cC--C
Q 011709 296 SVGDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EG--H 371 (479)
Q Consensus 296 s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~-~~--h 371 (479)
+-... +.|...++.... ........-...+.|++++..+.++++=.....|..+|+.. .....+ .. .
T Consensus 531 tD~g~~~~I~~~~~dG~~--~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-------~~~~~v~~~~~~ 601 (791)
T 3m0c_C 531 TDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKR 601 (791)
T ss_dssp EECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEEECTTT
T ss_pred ecCCCCCeEEEEecCCCc--eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-------CceEEEecCCCc
Confidence 65333 789998887544 22223333457889999984555555545567899999864 222222 22 1
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
-....+|++. +.+|+++-...+.|...|...+
T Consensus 602 l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 602 LAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp TSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred cCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCC
Confidence 2234566664 3457877777888888886653
No 268
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.12 E-value=0.00032 Score=70.24 Aligned_cols=53 Identities=19% Similarity=0.067 Sum_probs=35.5
Q ss_pred CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 345 dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+|.|..||+.+ ++.+.++... ..+.+..+...+..+ ..++.||.|+.||.+++
T Consensus 443 ~g~l~a~D~~t------G~~~W~~~~~-~~~~~~~~~t~gg~v-~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 443 MGQIRAFDLTT------GKAKWTKWEK-FAAWGGTLYTKGGLV-WYATLDGYLKALDNKDG 495 (571)
T ss_dssp CEEEEEECTTT------CCEEEEEEES-SCCCSBCEEETTTEE-EEECTTSEEEEEETTTC
T ss_pred CCeEEEEECCC------CCEEEEecCC-CCccceeEEECCCEE-EEEcCCCeEEEEECCCC
Confidence 57899999987 6776666532 223333333345544 46888999999999884
No 269
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.10 E-value=7.7e-05 Score=73.25 Aligned_cols=169 Identities=12% Similarity=0.052 Sum_probs=104.3
Q ss_pred ceEEEEE-e-eCCCcEEEEE-----------------ecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEE
Q 011709 280 TVEDVTF-C-PSSAQEFCSV-----------------GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL 340 (479)
Q Consensus 280 ~v~~l~~-~-~~~~~~l~s~-----------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~ 340 (479)
....+++ . |++..+++++ -.++.+.+.|..+.+ +........ ....++++| ++.+++
T Consensus 135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~--v~~qI~Vgg-~pd~~~~sp-dGk~~~ 210 (595)
T 1fwx_A 135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE--VAWQVLVSG-NLDNCDADY-EGKWAF 210 (595)
T ss_dssp SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE--EEEEEEESS-CCCCEEECS-SSSEEE
T ss_pred CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCe--EEEEEEeCC-CccceEECC-CCCEEE
Confidence 4667777 4 7774444332 345689999999876 455443222 345688999 888888
Q ss_pred EEeCCC--------------------------------------cEEEEecCCCCCCCCCCc-eeeecCCCCcEEEEEEe
Q 011709 341 TGSADN--------------------------------------SVRMFDRRNLTSNGVGSP-INKFEGHSAAVLCVQWS 381 (479)
Q Consensus 341 tgs~dg--------------------------------------~I~iwd~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~ 381 (479)
+.+.+. .|.|.|.++.. +.. +..+.. .....++.++
T Consensus 211 vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~----~~~~~~~Ipv-g~~PhGv~~s 285 (595)
T 1fwx_A 211 STSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA----SSLFTRYIPI-ANNPHGCNMA 285 (595)
T ss_dssp EEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG----CCSSEEEEEE-ESSCCCEEEC
T ss_pred EEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC----CceeEEEEec-CCCceEEEEc
Confidence 888653 35566665411 122 333332 2345689999
Q ss_pred cCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEE
Q 011709 382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIY 461 (479)
Q Consensus 382 p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~ 461 (479)
|||+++++++..+.+|.++|+.+........ . .....+.....--.....++|+|+| .+.++... ++.|..|
T Consensus 286 PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~-l--~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l----dsqV~kw 357 (595)
T 1fwx_A 286 PDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN-A--DPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFL----DSQVVKW 357 (595)
T ss_dssp TTSSEEEEECTTSSBEEEEEGGGHHHHHHSC-C--CGGGGEEECCBCCSCEEEEEECTTS-EEEEEETT----TTEEEEE
T ss_pred CCCCEEEEeCCCCCeEEEEECcccccccccc-c--CcccceEEEcCCCCCcceEEECCCC-eEEEEEec----CCcEEEE
Confidence 9999999888889999999998631100000 0 0001122222222346889999999 66555544 8899999
Q ss_pred eecc
Q 011709 462 CHLE 465 (479)
Q Consensus 462 ~~~~ 465 (479)
+...
T Consensus 358 di~~ 361 (595)
T 1fwx_A 358 NIED 361 (595)
T ss_dssp EHHH
T ss_pred EhhH
Confidence 8654
No 270
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=0.0015 Score=62.82 Aligned_cols=157 Identities=5% Similarity=0.007 Sum_probs=91.5
Q ss_pred ceeEEEecC-CCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecC-CC-
Q 011709 142 EVNRIRELP-QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DK- 218 (479)
Q Consensus 142 ~V~~l~~~p-~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~-dg- 218 (479)
....|+++| .++.++++-.. +.|+.+|.... .. ..+.... .....++|++++++|+.+.. ++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~------------~v-~~~~~~~-~~P~~ia~d~~G~~lyvad~~~~~ 202 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKE------------YV-STVYSGL-SKVRTICWTHEADSMIITNDQNNN 202 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTT------------EE-EEEECCC-SCEEEEEECTTSSEEEEEECCSCT
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCC------------EE-EEEecCC-CCcceEEEeCCCCEEEEEeCCCCc
Confidence 346778887 35555555444 78888988765 11 1222222 23579999999996655543 22
Q ss_pred ---cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEE
Q 011709 219 ---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295 (479)
Q Consensus 219 ---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 295 (479)
.+.+.+...... ....+.. ......++++|++..+++
T Consensus 203 ~~~~v~~~~~~g~~~---------------------------------------~~~~l~~-~~~p~giavdp~~g~lyv 242 (430)
T 3tc9_A 203 DRPNNYILTRESGFK---------------------------------------VITELTK-GQNCNGAETHPINGELYF 242 (430)
T ss_dssp TSEEEEEEEGGGTSC---------------------------------------SEEEEEE-CSSCCCEEECTTTCCEEE
T ss_pred ccceEEEEeCCCcee---------------------------------------eeeeecc-CCCceEEEEeCCCCEEEE
Confidence 233333221100 0011111 223567889994436777
Q ss_pred EEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcE-EEEEeCCCcEEEEecCC
Q 011709 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNL-ILTGSADNSVRMFDRRN 355 (479)
Q Consensus 296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~-l~tgs~dg~I~iwd~~~ 355 (479)
+-..++.|..+|...+....+... ........++|+| ++++ +++-...+.|..++...
T Consensus 243 ~d~~~~~V~~~~~~~~~~~~~~~~-~~~~~P~gia~~p-dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 243 NSWNAGQVFRYDFTTQETTPLFTI-QDSGWEFHIQFHP-SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EETTTTEEEEEETTTTEEEEEEEC-SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred EECCCCEEEEEECCCCcEEEEEEc-CCCCcceeEEEcC-CCCEEEEEECCCCEEEEEeCCc
Confidence 777788999999986552111111 2224567899999 8884 45555678999988764
No 271
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.05 E-value=0.00023 Score=73.90 Aligned_cols=158 Identities=15% Similarity=0.027 Sum_probs=92.0
Q ss_pred ceeeeeec-CCCCcEEEecC-C----CcEEEEecCCC-ccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCC
Q 011709 198 AEFALAMC-PTEPYVLSGGK-D----KSVVLWSIQDH-ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP 270 (479)
Q Consensus 198 ~v~~l~~s-~~~~~l~s~s~-d----g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (479)
.+...+|| |||++|+-+.. + .+|+++|+.++ ... .
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l----~---------------------------------- 216 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI----A---------------------------------- 216 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----C----------------------------------
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----C----------------------------------
Confidence 36688999 99998774432 2 35999999765 310 0
Q ss_pred ceeecCCCCceEEEEEeeCCCcEEEEEecC-----CeEEEEeCCCCCCCceeeec-cCCCCeEEEEecCCCCcEEEEEeC
Q 011709 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSA 344 (479)
Q Consensus 271 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~l~tgs~ 344 (479)
..+. ....+++|+|++..++++ ..| ..|.++++.++...-...+. ........+.|+| ++++|+..+.
T Consensus 217 -~~~~---~~~~~~~WspDg~~l~y~-~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~ 290 (751)
T 2xe4_A 217 -DKVS---GTNGEIVWGPDHTSLFYV-TKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQ 290 (751)
T ss_dssp -CCEE---EECSCCEECSSTTEEEEE-EECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEE
T ss_pred -cccc---CceeeEEEecCCCEEEEE-EECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEec
Confidence 0111 113468999999555555 443 36888888776421112221 2334567889999 8888776653
Q ss_pred ---CCcEEEEecCCCCCCCCCCc--eeeecCCCCcEEEEEEecCCCcEEEEEeCC--C--CEEEEeCCC
Q 011709 345 ---DNSVRMFDRRNLTSNGVGSP--INKFEGHSAAVLCVQWSPDKSSVFGSSAED--G--LLNIWDYEK 404 (479)
Q Consensus 345 ---dg~I~iwd~~~~~~~~~~~~--~~~~~~h~~~v~~l~~~p~~~~llas~s~D--g--~v~iwd~~~ 404 (479)
...|+++|+.... +.. ........+...++.|+. +..+++....+ + .|..+|+..
T Consensus 291 ~~~~~~l~~~d~~~~~----~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 291 SPETAEVHLLDLRKGN----AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CSSCEEEEEEESSSCT----TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCceEEEEECCCCC----CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 3468888987631 122 222233445556666654 45455555444 3 566666653
No 272
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.03 E-value=0.0026 Score=61.25 Aligned_cols=197 Identities=10% Similarity=0.072 Sum_probs=111.2
Q ss_pred ceeEEEecCC--CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC-
Q 011709 142 EVNRIRELPQ--NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK- 218 (479)
Q Consensus 142 ~V~~l~~~p~--~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg- 218 (479)
....|++.|+ +++++++-.. +.|+.+|..++. . ..+.... ....+++++++|+ |+.+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~------------v-~~~~~~~-~~P~giavd~dG~-lyVad~~~~ 203 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQY------------V-DIKTTNI-GQCADVNFTLNGD-MVVVDDQSS 203 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTE------------E-EEECCCC-SCEEEEEECTTCC-EEEEECCSC
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCE------------E-EEeecCC-CCccEEEECCCCC-EEEEcCCCC
Confidence 3567888883 4555555444 789999987651 1 1222222 2368999999999 44444322
Q ss_pred ---c-EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEE
Q 011709 219 ---S-VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF 294 (479)
Q Consensus 219 ---~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 294 (479)
. +...+...... ....+. .......++++|.+..++
T Consensus 204 ~~~~gv~~~~~~~~~~---------------------------------------~~~~~~-~~~~P~giavd~~~G~ly 243 (433)
T 4hw6_A 204 DTNTGIYLFTRASGFT---------------------------------------ERLSLC-NARGAKTCAVHPQNGKIY 243 (433)
T ss_dssp TTSEEEEEECGGGTTC---------------------------------------CEEEEE-ECSSBCCCEECTTTCCEE
T ss_pred cccceEEEEECCCCee---------------------------------------cccccc-ccCCCCEEEEeCCCCeEE
Confidence 1 22222111000 001111 123456788999433667
Q ss_pred EEEecCCeEEEEeCCCCCCCceeee-c-cCCCCeEEEEecCCCCcE-EEEEeCCCcEEEEecCCCCCCCCCCc--eeeec
Q 011709 295 CSVGDDSCLILWDARVGTSPVIKVE-K-AHDADLHCVDWNPLDDNL-ILTGSADNSVRMFDRRNLTSNGVGSP--INKFE 369 (479)
Q Consensus 295 ~s~~~dg~i~iwd~~~~~~~~~~~~-~-~~~~~v~~l~~sp~~~~~-l~tgs~dg~I~iwd~~~~~~~~~~~~--~~~~~ 369 (479)
++-..++.|+.+|..++. ....+ . +....-..++|+| ++++ +++-...+.|+.+|..... +.. ...+.
T Consensus 244 v~d~~~~~V~~~d~~~g~--~~~~~~~~~~~~~~~~ia~dp-dG~~LYvad~~~~~I~~~~~d~~~----~~~~~~~~~a 316 (433)
T 4hw6_A 244 YTRYHHAMISSYDPATGT--LTEEEVMMDTKGSNFHIVWHP-TGDWAYIIYNGKHCIYRVDYNRET----GKLAVPYIVC 316 (433)
T ss_dssp ECBTTCSEEEEECTTTCC--EEEEEEECSCCSSCEEEEECT-TSSEEEEEETTTTEEEEEEBCTTT----CCBCCCEEEE
T ss_pred EEECCCCEEEEEECCCCe--EEEEEeccCCCCCcccEEEeC-CCCEEEEEeCCCCEEEEEeCCCCC----cccCcEEEEE
Confidence 676778899999998766 21111 1 2222335799999 7874 4455556899998875311 110 11111
Q ss_pred C---------------CCCcEEEEEE---------ecCCCcEEEEEeCCCCEEEEeC
Q 011709 370 G---------------HSAAVLCVQW---------SPDKSSVFGSSAEDGLLNIWDY 402 (479)
Q Consensus 370 ~---------------h~~~v~~l~~---------~p~~~~llas~s~Dg~v~iwd~ 402 (479)
+ .-.....+++ .+++. |+++-...+.|+.++.
T Consensus 317 g~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 317 GQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTP 372 (433)
T ss_dssp ECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECT
T ss_pred ecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECC
Confidence 1 1124677999 56665 6767777788999985
No 273
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.94 E-value=0.016 Score=60.54 Aligned_cols=205 Identities=9% Similarity=0.092 Sum_probs=123.3
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
..|.++...+ ++.+. .|+.+ -|.+||..+............. ..-....|.++...++|. |..|+.++-|
T Consensus 263 ~~i~~i~~d~-~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~------~~l~~~~i~~i~~D~~g~-lWigt~~~Gl 332 (795)
T 4a2l_A 263 NYIRSLAMDS-QNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVEN------GSLSQRSVRSIFMDSQGG-MWLGTYFGGL 332 (795)
T ss_dssp SBEEEEEECT-TSCEE-EEESS-CEEEEETTTTEEEEECCCTTST------TSCSSSCEEEEEECTTSC-EEEEESSSCE
T ss_pred CeEEEEEEcC-CCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCC------CCCCCCcEEEEEEeCCcC-EEEEECCCCe
Confidence 5688888777 44443 44455 5889997765211100000000 001123588999988876 5566767778
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecC
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (479)
..++............ ... ..+ ....|.++...+++ . +..|+.+
T Consensus 333 ~~~~~~~~~~~~~~~~-----------------------------~~~---~~l--~~~~V~~i~~d~~g-~-lWiGt~~ 376 (795)
T 4a2l_A 333 NYYHPIRNRFKNIRNI-----------------------------PYK---NSL--SDNVVSCIVEDKDK-N-LWIGTND 376 (795)
T ss_dssp EEECGGGGSSEEECCC-----------------------------TTS---SSC--SCSSEEEEEECTTS-C-EEEEESS
T ss_pred EEeCCCcccceEEcCC-----------------------------CCC---CCC--CCCeeEEEEECCCC-C-EEEEECC
Confidence 8888754321100000 000 001 23468899888777 3 6667788
Q ss_pred CeEEEEeCCCCCCCceeeec--------cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec---
Q 011709 301 SCLILWDARVGTSPVIKVEK--------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE--- 369 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~--------~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~--- 369 (479)
+-|..||..++. ...... -....|.++...+ ++++|..|+.++-|.+||.++ ++ +..+.
T Consensus 377 ~Gl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~------~~-~~~~~~~~ 446 (795)
T 4a2l_A 377 GGLNLYNPITQR--FTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNS------GQ-VENFNQRN 446 (795)
T ss_dssp SCEEEECTTTCC--EEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTT------CC-EEEECTTT
T ss_pred CCeEEEcCCCCc--EEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCC------Cc-EEEeecCC
Confidence 789999988766 222211 1235789999887 777577788877899999876 22 22222
Q ss_pred --CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 370 --GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 370 --~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.+...|.++...+++. |. .|+.+ -+.+||...
T Consensus 447 ~~l~~~~v~~i~~d~~g~-lw-igt~~-Gl~~~~~~~ 480 (795)
T 4a2l_A 447 SQLVNENVYAILPDGEGN-LW-LGTLS-ALVRFNPEQ 480 (795)
T ss_dssp SCCSCSCEEEEEECSSSC-EE-EEESS-CEEEEETTT
T ss_pred CCcCCCeeEEEEECCCCC-EE-EEecC-ceeEEeCCC
Confidence 2345799999988887 44 34444 488999876
No 274
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.93 E-value=0.001 Score=67.90 Aligned_cols=242 Identities=11% Similarity=0.026 Sum_probs=119.2
Q ss_pred EEEecCCCCcEEEEEeC-CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEec-CC-----
Q 011709 145 RIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KD----- 217 (479)
Q Consensus 145 ~l~~~p~~~~~lat~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s-~d----- 217 (479)
.+++.. ++.+++.|+. +..+.+||..+..=. ....+ +....-.+++..++++.++.|+ .+
T Consensus 247 ~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~----------~~~~~--~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~ 313 (656)
T 1k3i_A 247 GISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWI----------PGPDM--QVARGYQSSATMSDGRVFTIGGSWSGGVFE 313 (656)
T ss_dssp EEEECT-TSCEEEECSSSTTCEEEEEGGGTEEE----------ECCCC--SSCCSSCEEEECTTSCEEEECCCCCSSSCC
T ss_pred cccCCC-CCCEEEeCCCCCCceEEecCcCCcee----------ECCCC--CccccccceEEecCCeEEEEeCcccCCccc
Confidence 455566 7788888884 458999998865211 00011 1111123556667899888888 44
Q ss_pred CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE
Q 011709 218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297 (479)
Q Consensus 218 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 297 (479)
..+.+||..+..-............... . .....+...+..+... ++ ..+ ..
T Consensus 314 ~~~e~yd~~t~~W~~~~~~~~~p~~~~~------------------------~-~~~~~~~~~iyv~Gg~-~g-~~~-~~ 365 (656)
T 1k3i_A 314 KNGEVYSPSSKTWTSLPNAKVNPMLTAD------------------------K-QGLYRSDNHAWLFGWK-KG-SVF-QA 365 (656)
T ss_dssp CCEEEEETTTTEEEEETTSCSGGGCCCC------------------------T-TGGGTTTCSCCEEECG-GG-CEE-EC
T ss_pred ccceEeCCCCCcceeCCCcccccccccc------------------------c-cceeecCCceEEEECC-CC-cEE-Ee
Confidence 5688999875432110000000000000 0 0000011112111111 12 111 22
Q ss_pred ecCCeEEEEeCCCCCCCceeeeccC---------CCCeEEEEecCCCCcEEEEEeCCC-----------cEEEEecCCCC
Q 011709 298 GDDSCLILWDARVGTSPVIKVEKAH---------DADLHCVDWNPLDDNLILTGSADN-----------SVRMFDRRNLT 357 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~l~~sp~~~~~l~tgs~dg-----------~I~iwd~~~~~ 357 (479)
.....+..||..+... ......+ ...-.++.|...++.+++.|+.++ .|.+||...
T Consensus 366 ~~~~~v~~yd~~~~~w--~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~-- 441 (656)
T 1k3i_A 366 GPSTAMNWYYTSGSGD--VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGT-- 441 (656)
T ss_dssp CSSSEEEEEECSTTCE--EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTS--
T ss_pred cCccceeeeecCCcce--eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCC--
Confidence 2345678899887762 2221111 112345555444778888888543 677888765
Q ss_pred CCCCCCceeee--cCCCCcE-EEEEEecCCCcEEEEEeCC-----------CCEEEEeCCCCCccccCCCCCCCCCCeeE
Q 011709 358 SNGVGSPINKF--EGHSAAV-LCVQWSPDKSSVFGSSAED-----------GLLNIWDYEKVGKKVEQGPRTTNYPAGLF 423 (479)
Q Consensus 358 ~~~~~~~~~~~--~~h~~~v-~~l~~~p~~~~llas~s~D-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 423 (479)
..-.... ..+.... .++...|++. +++.||.+ ..+.+||..+. .-... ...
T Consensus 442 ----~~W~~~~~~~mp~~R~~~~~~~l~~g~-i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~-~W~~~----~~~----- 506 (656)
T 1k3i_A 442 ----SPNTVFASNGLYFARTFHTSVVLPDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPEQD-TFYKQ----NPN----- 506 (656)
T ss_dssp ----CCEEEECTTCCSSCCBSCEEEECTTSC-EEEECCBSBCCTTCCCSBCCCCEEEEGGGT-EEEEC----CCC-----
T ss_pred ----CCeeEEccCCCCCCcccCCeEECCCCC-EEEECCcccCcCcCCCCcccceEEEcCCCC-ceeec----CCC-----
Confidence 2221111 1122222 3445667887 77788764 46889998762 11110 000
Q ss_pred EEeCCCCC-ceeEEEecCCCeeeecCC
Q 011709 424 FQHAGHSP-SSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 424 ~~~~gh~~-~~~~~~sp~~~~l~~~~~ 449 (479)
...+. ...+.+.|+++.++.||.
T Consensus 507 ---~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 507 ---SIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp ---SSCCCTTEEEEECTTSCEEEEECC
T ss_pred ---CCccccccHhhcCCCcEEEecCCC
Confidence 00111 234556689999998885
No 275
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.93 E-value=0.00011 Score=75.54 Aligned_cols=207 Identities=9% Similarity=-0.022 Sum_probs=116.1
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCC-cEEEecCCCc
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKS 219 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~-~l~s~s~dg~ 219 (479)
..+..|+|.+..+.++++-...+.|+.+++....... .....+..... ...+|++.+.++ ++++-...+.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~--------~~~~~i~~~~~-~P~glavD~~~g~LY~tD~~~~~ 476 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--------SYDTVISRDIQ-APDGLAVDWIHSNIYWTDSVLGT 476 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C--------CCCCBCCSCC---CCCEECCCSSSBCEECCTTTSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc--------ceEEEEeCCCC-CcceEEEEeeCCcEEEEeccCCe
Confidence 4567788888666666666667899999987521000 00001111111 135778776544 4444455788
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
|.+.++....... .+.........|++.|.+..++++-..
T Consensus 477 I~v~d~dg~~~~~----------------------------------------l~~~~~~~P~giavDp~~g~ly~td~~ 516 (699)
T 1n7d_A 477 VSVADTKGVKRKT----------------------------------------LFREQGSKPRAIVVDPVHGFMYWTDWG 516 (699)
T ss_dssp EEEEBSSSCCEEE----------------------------------------ECCCSSCCCCCEECCSSSSCCEECCCS
T ss_pred EEEEecCCCceEE----------------------------------------EEeCCCCCcceEEEccCCCcEEEcccC
Confidence 9998876432110 011111234677888866455555433
Q ss_pred C-CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEE
Q 011709 300 D-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378 (479)
Q Consensus 300 d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 378 (479)
. +.|..+++..... .......-...+.|+|+|..+.++++-+..+.|..+|+.... ...+............|
T Consensus 517 ~~~~I~~~~~dG~~~--~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~----~~~~~~~~~~~~~P~gl 590 (699)
T 1n7d_A 517 TPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN----RKTILEDEKRLAHPFSL 590 (699)
T ss_dssp SSCCEEBCCSSSCCC--CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC----CEEECCCSSSCSSCCCC
T ss_pred CCCeEEEEeCCCCCe--eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc----eEEEEecCCcCCCceEe
Confidence 3 6788887764331 111112234467899998456666666667899999987411 11111111112234456
Q ss_pred EEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 379 QWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 379 ~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++..+ +++++....+.|..+|..+
T Consensus 591 avd~~--~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 591 AVFED--KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp EEETT--EEEEECSTTTCEEEEETTT
T ss_pred EEECC--EEEEEeCCCCeEEEEEccC
Confidence 66543 5777887789999999766
No 276
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.92 E-value=0.00016 Score=74.24 Aligned_cols=161 Identities=5% Similarity=-0.056 Sum_probs=96.6
Q ss_pred eeeeeecCCCCcEEEe-cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC
Q 011709 199 EFALAMCPTEPYVLSG-GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (479)
+.+|+|.+.+..|+.+ ...+.|..+++........ ....+...
T Consensus 408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~------------------------------------~~~~i~~~ 451 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS------------------------------------YDTVISRD 451 (699)
T ss_dssp CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC------------------------------------CCCBCCSC
T ss_pred eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc------------------------------------eEEEEeCC
Confidence 4689999876666554 3567888888764100000 00011111
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC-CcEEEEecCCC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNL 356 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d-g~I~iwd~~~~ 356 (479)
......|++.+.+..++++-...+.|.++|+.... ..............|+++|..+.++++-... +.|.++++..
T Consensus 452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~--~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG- 528 (699)
T 1n7d_A 452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG- 528 (699)
T ss_dssp C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC--EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-
T ss_pred CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc--eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-
Confidence 12244677776554667776677889999987654 2222222234567889998444444444333 7888888764
Q ss_pred CCCCCCCceeee-cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 357 TSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 357 ~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.....+ ...-...+.|+|+|++..|+++-+..+.|.++|+..
T Consensus 529 ------~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 529 ------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp ------CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred ------CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 222222 122345678999998887887877788999999864
No 277
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.92 E-value=0.0064 Score=63.62 Aligned_cols=235 Identities=10% Similarity=0.049 Sum_probs=133.8
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEe-ccCCCceeeeeecCCCCcEEEecCCCc
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSGGKDKS 219 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~l~~s~~~~~l~s~s~dg~ 219 (479)
..|.++...+ +++ |-.|+.++-|..||..+.....-.... .... +-....|.++...++|..|..|+.++-
T Consensus 357 ~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~------~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~G 428 (795)
T 4a2l_A 357 NVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQRFTSYTLQE------DESARGIGSNNIKAVYVDEKKSLVYIGTHAGG 428 (795)
T ss_dssp SSEEEEEECT-TSC-EEEEESSSCEEEECTTTCCEEEECCC------------CCSCSCEEEEEEETTTTEEEEEETTTE
T ss_pred CeeEEEEECC-CCC-EEEEECCCCeEEEcCCCCcEEEEecCC------CCcccCCCCccEEEEEEcCCCCEEEEEeCcCc
Confidence 4588888776 444 445777777999998765211100000 0000 011235889998888874677777777
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEec
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD 299 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 299 (479)
|.++|..++........ . .. .....|.++...+++ . |..|+.
T Consensus 429 l~~~d~~~~~~~~~~~~--------------------------------~--~~--l~~~~v~~i~~d~~g-~-lwigt~ 470 (795)
T 4a2l_A 429 LSILHRNSGQVENFNQR--------------------------------N--SQ--LVNENVYAILPDGEG-N-LWLGTL 470 (795)
T ss_dssp EEEEETTTCCEEEECTT--------------------------------T--SC--CSCSCEEEEEECSSS-C-EEEEES
T ss_pred eeEEeCCCCcEEEeecC--------------------------------C--CC--cCCCeeEEEEECCCC-C-EEEEec
Confidence 99999875432110000 0 00 123568898888777 4 344444
Q ss_pred CCeEEEEeCCCCCCCceeeec------cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec----
Q 011709 300 DSCLILWDARVGTSPVIKVEK------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---- 369 (479)
Q Consensus 300 dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~---- 369 (479)
+ -|.+||..++. ...... .....|.++...+ ++.+.+ |+. +-|..||... ... .+.
T Consensus 471 ~-Gl~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~------~~~--~~~~~~~ 536 (795)
T 4a2l_A 471 S-ALVRFNPEQRS--FTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSVFKQEG------LDI--QKASILP 536 (795)
T ss_dssp S-CEEEEETTTTE--EEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEEEEEET------TEE--EECCCSC
T ss_pred C-ceeEEeCCCCe--EEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEEEeCCC------CeE--EEecCCC
Confidence 4 48889987765 222111 1236789999987 666554 444 5588888875 222 221
Q ss_pred ---CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC--CCceeEEEecCCCee
Q 011709 370 ---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--SPSSSIKFVLRESCL 444 (479)
Q Consensus 370 ---~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh--~~~~~~~~sp~~~~l 444 (479)
.+...|.++..++++. +.+ ++.. -|..||.... ..... . ...|- ..+.++...++|...
T Consensus 537 ~~~l~~~~i~~i~~d~~g~-lWi-gT~~-Gl~~~d~~~~-~~~~~-~-----------~~~gl~~~~i~~i~~d~~g~lW 600 (795)
T 4a2l_A 537 VSNVTKLFTNCIYEASNGI-IWV-GTRE-GFYCFNEKDK-QIKRY-N-----------TTNGLPNNVVYGILEDSFGRLW 600 (795)
T ss_dssp SCGGGGSCEEEEEECTTSC-EEE-EESS-CEEEEETTTT-EEEEE-C-----------GGGTCSCSCEEEEEECTTSCEE
T ss_pred CCCCCCCeeEEEEECCCCC-EEE-EeCC-CceeECCCCC-cEEEe-C-----------CCCCCchhheEEEEECCCCCEE
Confidence 2345799999999888 443 3334 5888997652 11100 0 00111 125667777777777
Q ss_pred eecCCCc
Q 011709 445 VDNNHGL 451 (479)
Q Consensus 445 ~~~~~~~ 451 (479)
+++..++
T Consensus 601 i~t~~Gl 607 (795)
T 4a2l_A 601 LSTNRGI 607 (795)
T ss_dssp EEETTEE
T ss_pred EEcCCce
Confidence 7776654
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.88 E-value=0.0067 Score=53.33 Aligned_cols=196 Identities=10% Similarity=0.072 Sum_probs=118.5
Q ss_pred ccCCCceeeeeecCCCCcEE-EecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCc
Q 011709 193 GHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR 271 (479)
Q Consensus 193 ~h~~~~v~~l~~s~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (479)
+-.. .+.+++|+|+++.|+ +...++.|...|.. +.....
T Consensus 24 g~~~-~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~-------------------------------------- 63 (255)
T 3qqz_A 24 GITN-NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT-------------------------------------- 63 (255)
T ss_dssp TCCS-CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE--------------------------------------
T ss_pred Cccc-CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE--------------------------------------
Confidence 3344 478999999876555 46677888888875 221100
Q ss_pred eeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCC-Cceeee------ccCCCCeEEEEecCCCCcEEEEEeC
Q 011709 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVE------KAHDADLHCVDWNPLDDNLILTGSA 344 (479)
Q Consensus 272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~------~~~~~~v~~l~~sp~~~~~l~tgs~ 344 (479)
..+.+ ......|++.+++ .++++.-.++.+.++++..... ..+... ...+.....|+|+| .++.|+++..
T Consensus 64 i~l~g-~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E 140 (255)
T 3qqz_A 64 IPLDF-VKDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKE 140 (255)
T ss_dssp EECSS-CSSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEE
T ss_pred EecCC-CCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEEC
Confidence 11122 2457888988877 5656655677898988866542 011111 12455678999999 6666666666
Q ss_pred CCcEEEEecCCCCCCCCCCceeee-------cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCC
Q 011709 345 DNSVRMFDRRNLTSNGVGSPINKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 417 (479)
Q Consensus 345 dg~I~iwd~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~ 417 (479)
.....||.++.... ...+..+ ..+...+.+++++|...++++.......+.++|... +..
T Consensus 141 ~~p~~i~~~~g~~~---~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g--~~~-------- 207 (255)
T 3qqz_A 141 KNPIEVYKVNGLLS---SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG--EVI-------- 207 (255)
T ss_dssp SSSEEEEEEESTTC---SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC--CEE--------
T ss_pred cCCceEEEEccccc---CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC--CEE--------
Confidence 55555555542110 1112221 112345789999999888888888888999999764 111
Q ss_pred CCCeeEEEeC-C-------CCCceeEEEecCCCeeeecCC
Q 011709 418 YPAGLFFQHA-G-------HSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 418 ~~~~l~~~~~-g-------h~~~~~~~~sp~~~~l~~~~~ 449 (479)
-.+... | ....-.++|.++|...++ +.
T Consensus 208 ----~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE 242 (255)
T 3qqz_A 208 ----GEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SE 242 (255)
T ss_dssp ----EEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ET
T ss_pred ----EEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cC
Confidence 112222 2 123578999999975554 44
No 279
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.88 E-value=0.022 Score=57.55 Aligned_cols=183 Identities=9% Similarity=-0.003 Sum_probs=115.6
Q ss_pred CCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEE-EecCCCcEEEEecCCCccccccCCccc
Q 011709 161 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATA 239 (479)
Q Consensus 161 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~ 239 (479)
....|+..|+.+..... ...+.+- . ...+|+|++.+..|. +-..++.|..++++.....
T Consensus 13 ~~~~I~~i~l~~~~~~~----------~~~~~~~-~-~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~-------- 72 (628)
T 4a0p_A 13 RRADIRRISLETNNNNV----------AIPLTGV-K-EASALDFDVTDNRIYWTDISLKTISRAFMNGSALE-------- 72 (628)
T ss_dssp ETTEEEEEESSCTTCEE----------ECCCCSC-S-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--------
T ss_pred eCCcEEEEECCCCCcce----------EEEcCCC-C-ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--------
Confidence 34578999987652110 0011121 2 256999999766554 5556788988887642110
Q ss_pred ccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeee
Q 011709 240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE 319 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 319 (479)
..+.........+++.+.+.+++++-...+.|.+.++..... ....
T Consensus 73 --------------------------------~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~--~~l~ 118 (628)
T 4a0p_A 73 --------------------------------HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR--QVLV 118 (628)
T ss_dssp --------------------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--EEEE
T ss_pred --------------------------------EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--EEEE
Confidence 111111234668888877667778877888999999876542 2222
Q ss_pred ccCCCCeEEEEecCCCCcEEEEE-eCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEE
Q 011709 320 KAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (479)
Q Consensus 320 ~~~~~~v~~l~~sp~~~~~l~tg-s~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~ 398 (479)
...-.....|+++|..+.++++- +..+.|...++.. .....+...-...+.|++++++..|+++-...+.|.
T Consensus 119 ~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG-------~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~ 191 (628)
T 4a0p_A 119 WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG-------SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIE 191 (628)
T ss_dssp CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC-------CceEEEECCCCCcceEEEccccCEEEEEECCCCEEE
Confidence 23345578999999445554543 2256788888764 223333334457889999998887887777788999
Q ss_pred EEeCCC
Q 011709 399 IWDYEK 404 (479)
Q Consensus 399 iwd~~~ 404 (479)
..|+..
T Consensus 192 ~~d~dG 197 (628)
T 4a0p_A 192 SSNMLG 197 (628)
T ss_dssp EEETTS
T ss_pred EEcCCC
Confidence 999865
No 280
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.88 E-value=0.00094 Score=68.28 Aligned_cols=53 Identities=9% Similarity=0.012 Sum_probs=37.5
Q ss_pred CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 345 dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+|.|..||+++ ++.+.+...+. ++....+...+. +++.++.||.|+.||.+++
T Consensus 437 ~g~l~A~D~~t------G~~~W~~~~~~-~~~~~~~~t~gg-~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 437 SGALLAWDPVK------QKAAWKVPYPT-HWNGGTLSTAGN-LVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp EEEEEEEETTT------TEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTC
T ss_pred cceEEEEeCCC------CcEEEEccCCC-CCcCceeEeCCC-EEEEECCcccchhhhhhcC
Confidence 47899999988 77776665332 333334455566 4557889999999999884
No 281
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.86 E-value=0.004 Score=62.40 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=37.6
Q ss_pred CeEEEEeCCCCCCCceeeec--cCC--------CCeEEEEec-CCCC---cEEEEEeCCCcEEEEecCCCCCCCCCCcee
Q 011709 301 SCLILWDARVGTSPVIKVEK--AHD--------ADLHCVDWN-PLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPIN 366 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~--~~~--------~~v~~l~~s-p~~~---~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~ 366 (479)
+.|..+|.++++ .+-.+. .|. .++. +... . ++ ..++.++.+|.++++|.++ ++++.
T Consensus 278 ~sv~Ald~~TG~--~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~lw 347 (599)
T 1w6s_A 278 MTIFGRDADTGE--AKFGYQKTPHDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGIVYTLDRTD------GALVS 347 (599)
T ss_dssp SEEEEEETTTCC--EEEEEESSTTCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSEEEEEETTT------CCEEE
T ss_pred ceEEEEeCCCCc--eeeEeecCCCccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcEEEEEECCC------CCEee
Confidence 489999999998 333332 221 1222 2222 3 56 5788899999999999988 56554
Q ss_pred ee
Q 011709 367 KF 368 (479)
Q Consensus 367 ~~ 368 (479)
..
T Consensus 348 ~~ 349 (599)
T 1w6s_A 348 AN 349 (599)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 282
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.82 E-value=0.005 Score=61.58 Aligned_cols=58 Identities=17% Similarity=0.097 Sum_probs=36.7
Q ss_pred CeEEEEeCCCCCCCceeeec--cCC--------CCeEEEEecCCCC---cEEEEEeCCCcEEEEecCCCCCCCCCCceee
Q 011709 301 SCLILWDARVGTSPVIKVEK--AHD--------ADLHCVDWNPLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~--~~~--------~~v~~l~~sp~~~---~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~ 367 (479)
+.|..+|.++++ .+..+. .|. .++. +...+ ++ .+++.++.+|.++++|.++ ++.+..
T Consensus 272 ~~v~Ald~~tG~--~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~~w~ 341 (571)
T 2ad6_A 272 MTIWGRDLDTGM--AKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNREN------GNLIVA 341 (571)
T ss_dssp TEEEEEETTTCC--EEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTT------CCEEEE
T ss_pred EEEEEEecCCCc--EEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCC------CCEEee
Confidence 369999999988 343332 221 2221 22223 55 4678899999999999988 555554
Q ss_pred e
Q 011709 368 F 368 (479)
Q Consensus 368 ~ 368 (479)
+
T Consensus 342 ~ 342 (571)
T 2ad6_A 342 E 342 (571)
T ss_dssp E
T ss_pred e
Confidence 4
No 283
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.75 E-value=0.0037 Score=62.64 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=33.1
Q ss_pred CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 345 dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+|.|..||+.+ ++.+.+... ..++.+-.....+..+ ..++.||.++.||.+++
T Consensus 452 ~G~l~A~D~~t------G~~~W~~~~-~~~~~~g~~~tagg~v-f~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 452 LGQIKAYNAIT------GDYKWEKME-RFAVWGGTMATAGDLV-FYGTLDGYLKARDSDTG 504 (599)
T ss_dssp CEEEEEECTTT------CCEEEEEEE-SSCCCSBCEEETTTEE-EEECTTSEEEEEETTTC
T ss_pred cCeEEEEECCC------CCEEeEecC-CCCccCcceEecCCEE-EEECCCCeEEEEECCCC
Confidence 46788888887 666655532 1122111122245534 46889999999999994
No 284
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.74 E-value=0.0012 Score=59.95 Aligned_cols=161 Identities=9% Similarity=0.085 Sum_probs=101.7
Q ss_pred eeeeecCCCCcEEEec-CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC-C
Q 011709 200 FALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-H 277 (479)
Q Consensus 200 ~~l~~s~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h 277 (479)
-++.|.+....|..++ ..++|..||...+.......+ . ....+ .
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~------------------------------~----~s~~g~~ 61 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVID------------------------------G----ASSNGDG 61 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCT------------------------------T----TCCSSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecC------------------------------C----ccccCCC
Confidence 4889988655555555 789999999864321110000 0 00000 1
Q ss_pred CCceEEEEE---eeCCCcEEEEEe-------------cCCeEEEEeCC---CCCCCceeeecc-----------CCCCeE
Q 011709 278 EDTVEDVTF---CPSSAQEFCSVG-------------DDSCLILWDAR---VGTSPVIKVEKA-----------HDADLH 327 (479)
Q Consensus 278 ~~~v~~l~~---~~~~~~~l~s~~-------------~dg~i~iwd~~---~~~~~~~~~~~~-----------~~~~v~ 327 (479)
...+..|.| .|++ .++++.. .+..|..||+. +++......+.. -....+
T Consensus 62 ~~~~sGl~~~~~D~~g-rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n 140 (334)
T 2p9w_A 62 EQQMSGLSLLTHDNSK-RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV 140 (334)
T ss_dssp SEEEEEEEESSSSSCC-EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE
T ss_pred cceeeEEEEeccCCCC-cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc
Confidence 123578899 5776 6666533 26789999999 666321222211 113588
Q ss_pred EEEecCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCCceeeec------CCCCcEEEEEEecCCCcEEEEEeCCCCEEEE
Q 011709 328 CVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKFE------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW 400 (479)
Q Consensus 328 ~l~~sp~~~~~l~tgs~d-g~I~iwd~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~llas~s~Dg~v~iw 400 (479)
.++..+ +|+..++++.- +.|..++... +.+..+. ......+.|+++|++..|++..+ +|.+..+
T Consensus 141 DvavD~-~GnaYVt~s~~~~~I~rV~pdG-------~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~f 211 (334)
T 2p9w_A 141 QSAQDR-DGNSYVAFALGMPAIARVSADG-------KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAF 211 (334)
T ss_dssp EEEECT-TSCEEEEEEESSCEEEEECTTS-------CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEE
T ss_pred eeEECC-CCCEEEeCCCCCCeEEEEeCCC-------CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEE
Confidence 999999 89999988888 8888777663 3232221 12234679999999997665556 9999999
Q ss_pred eCCC
Q 011709 401 DYEK 404 (479)
Q Consensus 401 d~~~ 404 (479)
|+..
T Consensus 212 D~~~ 215 (334)
T 2p9w_A 212 DVSK 215 (334)
T ss_dssp ECSS
T ss_pred cCCC
Confidence 9884
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.73 E-value=0.024 Score=51.90 Aligned_cols=123 Identities=12% Similarity=0.189 Sum_probs=80.2
Q ss_pred CceEEEEE--eeC-CCcEEEEEecCCeEEEEeCCC---CC--CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEE
Q 011709 279 DTVEDVTF--CPS-SAQEFCSVGDDSCLILWDARV---GT--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM 350 (479)
Q Consensus 279 ~~v~~l~~--~~~-~~~~l~s~~~dg~i~iwd~~~---~~--~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~i 350 (479)
..+..+++ +|. +..+++....+|.+..|++.. +. ..+++.+. ..+.+..+...+ ....|+.+-.+.-|..
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~ 205 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADD-EYGRLYIAEEDEAIWK 205 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEET-TTTEEEEEETTTEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcC-CCCeEEEecccceEEE
Confidence 45666777 564 434677888889999999843 21 12445543 456788899998 7788999999877777
Q ss_pred EecCCCCCCCCCCceeeec-CC-CCcEEEEEE--ecCCC-cEEEEEeCCCCEEEEeCCC
Q 011709 351 FDRRNLTSNGVGSPINKFE-GH-SAAVLCVQW--SPDKS-SVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 351 wd~~~~~~~~~~~~~~~~~-~h-~~~v~~l~~--~p~~~-~llas~s~Dg~v~iwd~~~ 404 (479)
+|.+... ...++.+..+. ++ ...+..|++ .++++ ++|+|+-.+.++.|||...
T Consensus 206 ~da~p~~-~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 206 FSAEPDG-GSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EECSTTS-CSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EeCCcCC-CCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 7755311 01123444432 22 236788888 45555 6777776688999999963
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.73 E-value=0.0028 Score=57.53 Aligned_cols=210 Identities=9% Similarity=0.049 Sum_probs=118.9
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEec-----cCCCceeeeee---cCCCCcEEEec
Q 011709 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG-----HQDNAEFALAM---CPTEPYVLSGG 215 (479)
Q Consensus 144 ~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~~v~~l~~---s~~~~~l~s~s 215 (479)
-+++|.+.++.++++.-..|+|..||...+..... .+.+ .....+.+|.| .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-----------~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-----------VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-----------CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-----------ecCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence 46789886776777766899999999875421110 1111 11112478999 68876666433
Q ss_pred -------------CCCcEEEEecC---CCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCC-CceeecC-C
Q 011709 216 -------------KDKSVVLWSIQ---DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG-PRGIYNG-H 277 (479)
Q Consensus 216 -------------~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-h 277 (479)
.+..|..+|+. ++........ .... -...+.+ -
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL-----------------------------~~~~~~~~~~~g~~ 135 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNF-----------------------------EKVQDEFEKKAGKR 135 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEES-----------------------------HHHHHHHHHHHSSC
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecC-----------------------------cccccccccccccc
Confidence 15778888887 3322111000 0000 0000001 1
Q ss_pred CCceEEEEEeeCCCcEEEEEecC-CeEEEEeCCCCCCCceeee-----ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEE
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDD-SCLILWDARVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMF 351 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~-----~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iw 351 (479)
....++++..++| +..++++.. +.|...|..... ..... .......+.|+++| ++++|++....|.|..+
T Consensus 136 ~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~--~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~f 211 (334)
T 2p9w_A 136 PFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGKT--VSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAF 211 (334)
T ss_dssp CEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSCC--EEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEE
T ss_pred ccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCE--EeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEE
Confidence 1358899999999 778888888 888777766443 22111 11223467999999 88888888779999999
Q ss_pred ecCCCCCCCCCCceeee-cCC---CCcEEE-EEEecCCCcEEEEEeCCCCEEEEe
Q 011709 352 DRRNLTSNGVGSPINKF-EGH---SAAVLC-VQWSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 352 d~~~~~~~~~~~~~~~~-~~h---~~~v~~-l~~~p~~~~llas~s~Dg~v~iwd 401 (479)
|++... ..++..- .+. -..... +.-..+|+.+|++.+..+.+.+.+
T Consensus 212 D~~~pv----~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S 262 (334)
T 2p9w_A 212 DVSKPY----AWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRS 262 (334)
T ss_dssp ECSSSS----CCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEEC
T ss_pred cCCCCc----ceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEEC
Confidence 998521 1012111 021 112333 333446765566766666555554
No 287
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=0.021 Score=59.51 Aligned_cols=231 Identities=10% Similarity=0.052 Sum_probs=131.2
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
..|.++...+ ++. |-.|+.++-|..||..+..... ...-..-....|.++...++|. |..|+.++-|
T Consensus 363 ~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~----------~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl 429 (781)
T 3v9f_A 363 KVVSSVCDDG-QGK-LWIGTDGGGINVFENGKRVAIY----------NKENRELLSNSVLCSLKDSEGN-LWFGTYLGNI 429 (781)
T ss_dssp SCEEEEEECT-TSC-EEEEEBSSCEEEEETTEEEEEC----------C-----CCCSBEEEEEECTTSC-EEEEETTEEE
T ss_pred cceEEEEEcC-CCC-EEEEeCCCcEEEEECCCCeEEE----------ccCCCCCCCcceEEEEECCCCC-EEEEeccCCE
Confidence 4588887766 443 4456656668889876541110 0000011223588888887776 4456666678
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecC
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (479)
..+|..++....... . ......|.++...+++ . +..|+.
T Consensus 430 ~~~~~~~~~~~~~~~------------------------------------~--~~~~~~v~~i~~d~~g-~-lwigt~- 468 (781)
T 3v9f_A 430 SYYNTRLKKFQIIEL------------------------------------E--KNELLDVRVFYEDKNK-K-IWIGTH- 468 (781)
T ss_dssp EEECSSSCEEEECCS------------------------------------T--TTCCCCEEEEEECTTS-E-EEEEET-
T ss_pred EEEcCCCCcEEEecc------------------------------------C--CCCCCeEEEEEECCCC-C-EEEEEC-
Confidence 888876432210000 0 0123568888887777 4 444555
Q ss_pred CeEEEEeCCCCCCCceeeeccC-----CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC----C
Q 011709 301 SCLILWDARVGTSPVIKVEKAH-----DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG----H 371 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~-----~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~----h 371 (479)
+-|.+||..++.. ....... ...|.++...+ ++.+ ..|+.++-|..||.+. ..+..+.. .
T Consensus 469 ~Gl~~~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~-------~~~~~~~~~~~l~ 537 (781)
T 3v9f_A 469 AGVFVIDLASKKV--IHHYDTSNSQLLENFVRSIAQDS-EGRF-WIGTFGGGVGIYTPDM-------QLVRKFNQYEGFC 537 (781)
T ss_dssp TEEEEEESSSSSC--CEEECTTTSSCSCSCEEEEEECT-TCCE-EEEESSSCEEEECTTC-------CEEEEECTTTTCS
T ss_pred CceEEEeCCCCeE--EecccCcccccccceeEEEEEcC-CCCE-EEEEcCCCEEEEeCCC-------CeEEEccCCCCCC
Confidence 5588899887662 2221111 46789999887 6665 4455544477788765 22333321 2
Q ss_pred CCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCC--CCceeEEEecCCCeeeecCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--SPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh--~~~~~~~~sp~~~~l~~~~~ 449 (479)
...|.++...+++. +. .++.+|.|..||.....-.. .-...|- ..+.++...++|...+++..
T Consensus 538 ~~~i~~i~~d~~g~-lW-i~T~~Glv~~~d~~~~~~~~-------------~~~~~gl~~~~i~~i~~d~~g~lW~~t~~ 602 (781)
T 3v9f_A 538 SNTINQIYRSSKGQ-MW-LATGEGLVCFPSARNFDYQV-------------FQRKEGLPNTHIRAISEDKNGNIWASTNT 602 (781)
T ss_dssp CSCEEEEEECTTSC-EE-EEETTEEEEESCTTTCCCEE-------------ECGGGTCSCCCCCEEEECSSSCEEEECSS
T ss_pred CCeeEEEEECCCCC-EE-EEECCCceEEECCCCCcEEE-------------ccccCCCCCceEEEEEECCCCCEEEEcCC
Confidence 35789999988887 44 34446755889876531110 0001111 12567777777877777766
Q ss_pred Cc
Q 011709 450 GL 451 (479)
Q Consensus 450 ~~ 451 (479)
++
T Consensus 603 Gl 604 (781)
T 3v9f_A 603 GI 604 (781)
T ss_dssp CE
T ss_pred ce
Confidence 54
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.71 E-value=0.0055 Score=58.91 Aligned_cols=156 Identities=10% Similarity=0.128 Sum_probs=93.5
Q ss_pred eeeeeecCC--CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecC
Q 011709 199 EFALAMCPT--EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG 276 (479)
Q Consensus 199 v~~l~~s~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (479)
..+|+|+|+ +..|+.+...+.|+.+|..++.. ..+..
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v-----------------------------------------~~~~~ 179 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV-----------------------------------------DIKTT 179 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE-----------------------------------------EEECC
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEE-----------------------------------------EEeec
Confidence 368999984 44566555448899998854332 11222
Q ss_pred CCCceEEEEEeeCCCcEEEEEecC---C-eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEe
Q 011709 277 HEDTVEDVTFCPSSAQEFCSVGDD---S-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352 (479)
Q Consensus 277 h~~~v~~l~~~~~~~~~l~s~~~d---g-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd 352 (479)
.......+++++++. ++++.... . .+...+...... ....+ ........++++|.++.++++-..++.|+.+|
T Consensus 180 ~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~-~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d 256 (433)
T 4hw6_A 180 NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFT-ERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYD 256 (433)
T ss_dssp CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTC-CEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEEC
T ss_pred CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCee-ccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEE
Confidence 334578999999994 55554321 1 233333322211 01111 12334567888885566666666678899999
Q ss_pred cCCCCCCCCCCceeee-c-CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 353 RRNLTSNGVGSPINKF-E-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 353 ~~~~~~~~~~~~~~~~-~-~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
... +.....+ . +....-..++|+|++++|+++-...+.|+.+++..
T Consensus 257 ~~~------g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 257 PAT------GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp TTT------CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred CCC------CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 875 3331222 1 11223357999999997777777788999988753
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=0.021 Score=55.29 Aligned_cols=263 Identities=11% Similarity=0.038 Sum_probs=138.7
Q ss_pred ceeEEEecCC-CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccC--CCceeeeee-------cCCCCcE
Q 011709 142 EVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ--DNAEFALAM-------CPTEPYV 211 (479)
Q Consensus 142 ~V~~l~~~p~-~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~--~~~v~~l~~-------s~~~~~l 211 (479)
....|+|.|. .++++++....+.|++.|..+.. .......-. -.....|+| ++++++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~------------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~l 207 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM------------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYM 207 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE------------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE------------EEEEEccCccccCCCcEEEEeecccccCCCCCEE
Confidence 3568889883 56666666666778889988751 111111111 113678999 9999867
Q ss_pred EEecCCC-c------EEEEecCC-CccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEE
Q 011709 212 LSGGKDK-S------VVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (479)
Q Consensus 212 ~s~s~dg-~------i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (479)
+.+...+ . |.+.+... +.... ......+..+ .....
T Consensus 208 yvad~~~~~~~~~~~V~~i~r~~~G~~~~--------------------------------~~~~~~v~~~----~~p~g 251 (496)
T 3kya_A 208 IVAIDYDGKGDESPSVYIIKRNADGTFDD--------------------------------RSDIQLIAAY----KQCNG 251 (496)
T ss_dssp EEEECCCTTGGGEEEEEEEECCTTSCCST--------------------------------TSCEEEEEEE----SCCCC
T ss_pred EEEeCCCCCcccCceEEEEecCCCCceee--------------------------------cccceeeccC----CCceE
Confidence 6665543 2 44554221 00000 0000001111 13457
Q ss_pred EEEeeCCCcEEEEEecCCeEEEEeCC-------CCCC-----Cc----e-eee-ccCCCCeEEEEecCCCCcEEEEE-eC
Q 011709 284 VTFCPSSAQEFCSVGDDSCLILWDAR-------VGTS-----PV----I-KVE-KAHDADLHCVDWNPLDDNLILTG-SA 344 (479)
Q Consensus 284 l~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~-----~~----~-~~~-~~~~~~v~~l~~sp~~~~~l~tg-s~ 344 (479)
++++|++..++++-..++.|..+|+. ++.. +. . ... .+.......|+|+| ++++|+.+ +.
T Consensus 252 iavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~ 330 (496)
T 3kya_A 252 ATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGVIN 330 (496)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEETT
T ss_pred EEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEEeCC
Confidence 78899665778888888999999997 5542 00 1 111 12234567999999 88854444 45
Q ss_pred CCcEEEEecCCCCCCCCCCc--eeeecC------C---------CCcEE-EEEEe-------cCCCcEEEEEeCCCCEEE
Q 011709 345 DNSVRMFDRRNLTSNGVGSP--INKFEG------H---------SAAVL-CVQWS-------PDKSSVFGSSAEDGLLNI 399 (479)
Q Consensus 345 dg~I~iwd~~~~~~~~~~~~--~~~~~~------h---------~~~v~-~l~~~-------p~~~~llas~s~Dg~v~i 399 (479)
...|+.+|..... +.. ...+-+ . -.... .++.. +++. |+++-.....|+.
T Consensus 331 ~h~I~kid~dg~~----~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~ 405 (496)
T 3kya_A 331 NHYFMRSDYDEIK----KEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRK 405 (496)
T ss_dssp TTEEEEEEEETTT----TEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEEEE
T ss_pred CCEEEEEecCCCc----ceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCe-EEEEECCCCEEEE
Confidence 6789987764311 110 011111 1 01234 45554 3444 6767777889999
Q ss_pred EeCCCCCccccCCCCCCCC---CCe-eEEEeCC------C-CCceeEEEecC-CCeeeecCCCccccceeEEEEeeccc
Q 011709 400 WDYEKVGKKVEQGPRTTNY---PAG-LFFQHAG------H-SPSSSIKFVLR-ESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 400 wd~~~~~~~~~~~~~~~~~---~~~-l~~~~~g------h-~~~~~~~~sp~-~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
++. . +............ +.. .-+. .| . .....+++.++ +...++-.. +..|+.+.....
T Consensus 406 i~~-~-G~v~TiaG~g~~~~~~~~~~~G~~-dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~-----N~rIrki~~~~~ 476 (496)
T 3kya_A 406 VTP-E-GIVSTYAGRGASTSLADGNQWGTD-DGDLREVARFRDVSGLVYDDVKEMFYVHDQV-----GHTIRTISMEQE 476 (496)
T ss_dssp ECT-T-CBEEEEEESCTTHHHHHSCSCCCC-CEETTTTCCCSSEEEEEEETTTTEEEEEETT-----TTEEEEEEECCC
T ss_pred EeC-C-CCEEEEecccccccccCccccccC-CCCchhhhhcCCCcEEEEECCCCEEEEEeCC-----CCEEEEEECCCC
Confidence 983 3 2211110000000 000 0000 01 1 12578999997 655555444 778888865543
No 290
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=0.0015 Score=62.83 Aligned_cols=156 Identities=12% Similarity=0.087 Sum_probs=94.1
Q ss_pred ceEEEEEee-CCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC-CC----cEEEEec
Q 011709 280 TVEDVTFCP-SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN----SVRMFDR 353 (479)
Q Consensus 280 ~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg----~I~iwd~ 353 (479)
....|+++| ++.. |+.+...+.|+.+|+..+. +..+.........|+|++ ++++|+.+.. ++ .+.+++.
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~---v~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEY---VSTVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTE---EEEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCE---EEEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC
Confidence 456889997 3424 4444444889999998765 333333456688999999 8885555544 22 3444443
Q ss_pred CCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCce
Q 011709 354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSS 433 (479)
Q Consensus 354 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~ 433 (479)
... ......+.. ......++++|++..|+++-..++.|..+|.... .. ..++...+.....
T Consensus 213 ~g~-----~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~-~~------------~~~~~~~~~~~P~ 273 (430)
T 3tc9_A 213 ESG-----FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ-ET------------TPLFTIQDSGWEF 273 (430)
T ss_dssp GGT-----SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT-EE------------EEEEECSSSSCCE
T ss_pred CCc-----eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-cE------------EEEEEcCCCCcce
Confidence 320 111122221 2345678899954447777777889999998752 10 1223333333468
Q ss_pred eEEEecCCCeeeecCCCccccceeEEEEee
Q 011709 434 SIKFVLRESCLVDNNHGLSYANKKIKIYCH 463 (479)
Q Consensus 434 ~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~ 463 (479)
.++|+|++.+|+.+... .+.|..++.
T Consensus 274 gia~~pdG~~lyv~d~~----~~~I~~~~~ 299 (430)
T 3tc9_A 274 HIQFHPSGNYAYIVVVN----QHYILRSDY 299 (430)
T ss_dssp EEEECTTSSEEEEEETT----TTEEEEEEE
T ss_pred eEEEcCCCCEEEEEECC----CCEEEEEeC
Confidence 89999999955554443 677777654
No 291
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.65 E-value=0.021 Score=57.08 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=34.2
Q ss_pred CeEEEEeCCCCCCCceeeec--cCC--------CCeEEEEec-CCCC---cEEEEEeCCCcEEEEecCC
Q 011709 301 SCLILWDARVGTSPVIKVEK--AHD--------ADLHCVDWN-PLDD---NLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~--~~~--------~~v~~l~~s-p~~~---~~l~tgs~dg~I~iwd~~~ 355 (479)
+.|..+|.++++ .+-.+. .|. .++. +... . ++ .+++.++.+|.++++|.++
T Consensus 291 ~~v~AlD~~TG~--~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 291 SGQVGVDPSSGE--VKWFYQHTPNDAWDFSGNNELVL-FDYKAK-DGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SEEEEECTTTCC--EEEEEESSTTCCSCCCCCCCCEE-EEEECS-SSCEEEEEEEECTTSEEEEEETTT
T ss_pred ceEEEEeCCCCC--EEEEEeCCCCCcccccCCCCcEE-EeeecC-CCCEEEEEEEECCCceEEEEECCC
Confidence 689999999998 343332 232 1222 2222 3 45 4788999999999999987
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.65 E-value=0.02 Score=57.71 Aligned_cols=203 Identities=6% Similarity=-0.031 Sum_probs=119.7
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE-EEecCCCc
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKS 219 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l-~s~s~dg~ 219 (479)
+.+..|+|++.++.++.+=...+.|..+++.... .....+..... ...+|++.+.++.| ++-...+.
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-----------~~~~v~~~~~~-~P~GlAvD~~~~~ly~~d~~~~~ 107 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-----------SVQNVVVSGLL-SPDGLACDWLGEKLYWTDSETNR 107 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEEECSSCS-CEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-----------ceEEEEeCCCC-CcCeEEEEecCCEEEEEeCCCCE
Confidence 4577899998777777776677889988887541 01112222112 35789999865544 45556789
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE-e
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV-G 298 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~ 298 (479)
|.+.+++..... ......-....+|++.|.+..++++- +
T Consensus 108 I~v~~~dG~~~~----------------------------------------~l~~~~l~~P~~Iavdp~~g~ly~tD~g 147 (619)
T 3s94_A 108 IEVSNLDGSLRK----------------------------------------VLFWQELDQPRAIALDPSSGFMYWTDWG 147 (619)
T ss_dssp EEEEETTSCSCE----------------------------------------EEECSSCSCCCCEEEETTTTEEEEEECS
T ss_pred EEEEECCCCCEE----------------------------------------EEEeCCCCCCceEEEecCCCeEEEeccC
Confidence 999988643221 11112223466889999764666664 2
Q ss_pred cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee-cCCCCcEEE
Q 011709 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLC 377 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~ 377 (479)
..+.|...++.... ........-...+.|++++..+++.++-...+.|..+|+... ....+ .+......+
T Consensus 148 ~~~~I~r~~~dG~~--~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~-------~~~~~~~~~~~~P~g 218 (619)
T 3s94_A 148 EVPKIERAGMDGSS--RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-------NRQAVVKGSLPHPFA 218 (619)
T ss_dssp SSCEEEEEETTSCS--CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC-------EEC---------CCC
T ss_pred CCCEEEEEECCCCc--eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC-------ccEEEEeCCCCCceE
Confidence 34677777776443 122222234567899999844555555555678999998742 11111 111222346
Q ss_pred EEEecCCCcEEEEEeCCCCEEEEeCCCCC
Q 011709 378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVG 406 (479)
Q Consensus 378 l~~~p~~~~llas~s~Dg~v~iwd~~~~~ 406 (479)
|++..+ +++.+-...+.|...|..++.
T Consensus 219 i~~~~~--~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 219 LTLFED--ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred EEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence 777655 577777778899999987643
No 293
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.62 E-value=0.0064 Score=60.91 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=47.3
Q ss_pred CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEE
Q 011709 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (479)
Q Consensus 345 dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 424 (479)
+|.|..||+++ ++.+.+...+. ++..-.....+. ++..++.||.++.||.+++ ++++
T Consensus 465 ~G~l~A~D~~t------G~~~W~~~~~~-~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG---------------~~lW 521 (582)
T 1flg_A 465 VGSLRAMDPVS------GKVVWEHKEHL-PLWAGVLATAGN-LVFTGTGDGYFKAFDAKSG---------------KELW 521 (582)
T ss_dssp SEEEEEECTTT------CCEEEEEEESS-CCCSCCEEETTT-EEEEECTTSEEEEEETTTC---------------CEEE
T ss_pred cceEEEEECCC------CCEEEEecCCC-CCcccceEeCCC-EEEEECCCCcEEEEECCCC---------------CEEE
Confidence 57899999988 67766654322 222211222345 4557889999999999985 3333
Q ss_pred EeCCCCC--ceeEEEecCCCeeee
Q 011709 425 QHAGHSP--SSSIKFVLRESCLVD 446 (479)
Q Consensus 425 ~~~gh~~--~~~~~~sp~~~~l~~ 446 (479)
....... ..-+.|..+|+..++
T Consensus 522 ~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 522 KFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEE
T ss_pred EecCCCCcccCceEEEECCEEEEE
Confidence 3332233 234677777764333
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.58 E-value=0.073 Score=53.68 Aligned_cols=200 Identities=6% Similarity=-0.054 Sum_probs=125.7
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcE-EEecCCCc
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKS 219 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l-~s~s~dg~ 219 (479)
..+..|+|.+.++.++.+-..++.|+.+++.... ....+..... ...+|++.+.++.| ++-...+.
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~------------~~~v~~~g~~-~P~GlAvD~~~~~LY~tD~~~~~ 103 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA------------LEHVVEFGLD-YPEGMAVDWLGKNLYWADTGTNR 103 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------------CEEEECSSCS-CCCEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC------------cEEEEeCCCC-CcceEEEEeCCCEEEEEECCCCE
Confidence 4578999999788888888888999999987541 1112221111 24678887765544 45455688
Q ss_pred EEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEE-e
Q 011709 220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV-G 298 (479)
Q Consensus 220 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~ 298 (479)
|.+.+++..... ..+...-....+|++.|....++++- +
T Consensus 104 I~v~~~dG~~~~----------------------------------------~l~~~~l~~P~~iavdp~~G~lY~tD~g 143 (628)
T 4a0p_A 104 IEVSKLDGQHRQ----------------------------------------VLVWKDLDSPRALALDPAEGFMYWTEWG 143 (628)
T ss_dssp EEEEETTSTTCE----------------------------------------EEECSSCCCEEEEEEETTTTEEEEEECS
T ss_pred EEEEecCCCcEE----------------------------------------EEEeCCCCCcccEEEccCCCeEEEeCCC
Confidence 888888643210 11112223468999998654666654 3
Q ss_pred cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEE
Q 011709 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 378 (479)
..+.|...++.... ...+...-...+.|++++..+.+.++=...+.|..+|+... .. ..+........++
T Consensus 144 ~~~~I~r~~~dG~~---~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~------~~-~v~~~~l~~P~gl 213 (628)
T 4a0p_A 144 GKPKIDRAAMDGSE---RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL------NR-EVIADDLPHPFGL 213 (628)
T ss_dssp SSCEEEEEETTSCS---CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC------SC-EEEEECCSCEEEE
T ss_pred CCCEEEEEeCCCCc---eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC------ce-EEeeccCCCceEE
Confidence 35788888886554 22222344567899999933445555555688999999752 11 2333333445688
Q ss_pred EEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 379 QWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 379 ~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
++.. .+++++-...+.|...|..++
T Consensus 214 av~~--~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 214 TQYQ--DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEET--TEEEEEETTTTEEEEEETTTC
T ss_pred EEEC--CEEEEecCCCCEEEEEECCCC
Confidence 8865 347777777888999987664
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.57 E-value=0.046 Score=55.08 Aligned_cols=158 Identities=3% Similarity=-0.066 Sum_probs=101.5
Q ss_pred eeeeeecCCCCcEEEe-cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC
Q 011709 199 EFALAMCPTEPYVLSG-GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH 277 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (479)
..+|+|++.++.|..+ ...+.|..++++..... ...+...
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~---------------------------------------~~v~~~~ 82 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV---------------------------------------QNVVVSG 82 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----C---------------------------------------EEEECSS
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce---------------------------------------EEEEeCC
Confidence 5699999876655544 44678888887642100 0112222
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCCC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNL 356 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~~ 356 (479)
......+++.+.+.+++++-...+.|.+.|+..... .......-.....|+++|..+.+++|--. .+.|...++..
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~--~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG- 159 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG- 159 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE--EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-
Confidence 246789999987767888888889999999986542 22222334456789999944555555422 46777777653
Q ss_pred CCCCCCCceeee-cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 357 TSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 357 ~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.....+ ...-...+.|++++++..|+++-+..+.|...|+..
T Consensus 160 ------~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 160 ------SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp ------CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred ------CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence 222222 223456789999998887887777788899999865
No 296
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.43 E-value=0.049 Score=56.78 Aligned_cols=205 Identities=8% Similarity=0.018 Sum_probs=117.6
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
..|.++...+ ++. |-.|+.++-|..++........-...... .. ..+-....|.++...++|. |..|+.++-|
T Consensus 313 ~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~-~~---~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl 385 (781)
T 3v9f_A 313 ASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ-MN---ESSLSNKVVSSVCDDGQGK-LWIGTDGGGI 385 (781)
T ss_dssp SCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSCEEEC----C-CC---SSCCSSSCEEEEEECTTSC-EEEEEBSSCE
T ss_pred CeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcceeeccCccc-cc---cCCCCCcceEEEEEcCCCC-EEEEeCCCcE
Confidence 4688887776 443 55666667788888775521110000000 00 0011123588888887775 5566656668
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecC
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (479)
..+|..+......... . ......|.++...+++ . |..|+.+
T Consensus 386 ~~~~~~~~~~~~~~~~-----------------------------------~--~~~~~~v~~i~~d~~g-~-lWigt~~ 426 (781)
T 3v9f_A 386 NVFENGKRVAIYNKEN-----------------------------------R--ELLSNSVLCSLKDSEG-N-LWFGTYL 426 (781)
T ss_dssp EEEETTEEEEECC------------------------------------------CCCSBEEEEEECTTS-C-EEEEETT
T ss_pred EEEECCCCeEEEccCC-----------------------------------C--CCCCcceEEEEECCCC-C-EEEEecc
Confidence 8888764321100000 0 1123568888887776 3 5557776
Q ss_pred CeEEEEeCCCCCCCceeee--ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeecC-----CCC
Q 011709 301 SCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-----HSA 373 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~~-----h~~ 373 (479)
+-|..+|..+++ ..... ......|.++...+ ++. |..|+. +-|..||..+ +........ ...
T Consensus 427 ~Gl~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~~~~~------~~~~~~~~~~~~~~~~~ 495 (781)
T 3v9f_A 427 GNISYYNTRLKK--FQIIELEKNELLDVRVFYEDK-NKK-IWIGTH-AGVFVIDLAS------KKVIHHYDTSNSQLLEN 495 (781)
T ss_dssp EEEEEECSSSCE--EEECCSTTTCCCCEEEEEECT-TSE-EEEEET-TEEEEEESSS------SSCCEEECTTTSSCSCS
T ss_pred CCEEEEcCCCCc--EEEeccCCCCCCeEEEEEECC-CCC-EEEEEC-CceEEEeCCC------CeEEecccCcccccccc
Confidence 778999987765 22221 12346789998887 555 555555 5688899876 222221111 135
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
.|.++...+++. +. .|+.++-|..||...
T Consensus 496 ~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 496 FVRSIAQDSEGR-FW-IGTFGGGVGIYTPDM 524 (781)
T ss_dssp CEEEEEECTTCC-EE-EEESSSCEEEECTTC
T ss_pred eeEEEEEcCCCC-EE-EEEcCCCEEEEeCCC
Confidence 799999999887 44 444434477888765
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.37 E-value=0.0062 Score=58.98 Aligned_cols=173 Identities=10% Similarity=0.018 Sum_probs=97.6
Q ss_pred ceEEEEEeeC-CCcEEEEEecCCeEEEEeCCCCCCCceeeecc---CCCCeEEEEe-------cCCCCcEEEEEeCCC-c
Q 011709 280 TVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---HDADLHCVDW-------NPLDDNLILTGSADN-S 347 (479)
Q Consensus 280 ~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~l~~-------sp~~~~~l~tgs~dg-~ 347 (479)
....|+|+|. +.+++++....+.|++.|+..+. +...... .......++| ++ ++..|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCC
Confidence 4678999984 43556655555789999998876 3322222 1235789999 99 777556555543 2
Q ss_pred ------EEEEecCCCCCCCCCCc-eeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCC-------CCCccccCCC
Q 011709 348 ------VRMFDRRNLTSNGVGSP-INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE-------KVGKKVEQGP 413 (479)
Q Consensus 348 ------I~iwd~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~-------~~~~~~~~~~ 413 (479)
|.+++... ........ ...+... .....++++|++..|+++-..++.|..+|+. .+ ..-.+..
T Consensus 217 ~~~~~~V~~i~r~~-~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg-~~~tp~~ 293 (496)
T 3kya_A 217 GDESPSVYIIKRNA-DGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG-GSWDPIV 293 (496)
T ss_dssp GGGEEEEEEEECCT-TSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT-CCCCCBG
T ss_pred cccCceEEEEecCC-CCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc-eeecccc
Confidence 66776332 10000000 0122111 2345788999777788888888999999987 32 1100000
Q ss_pred CCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCCCccccceeEEEEe
Q 011709 414 RTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNHGLSYANKKIKIYC 462 (479)
Q Consensus 414 ~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~ 462 (479)
....+....++..........++|+|++.+|+.+..+ ...|+.++
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~----~h~I~kid 338 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN----NHYFMRSD 338 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT----TTEEEEEE
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC----CCEEEEEe
Confidence 0000001223444443446899999999954444332 56777654
No 298
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.28 E-value=0.1 Score=47.80 Aligned_cols=196 Identities=10% Similarity=0.129 Sum_probs=103.2
Q ss_pred CCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC
Q 011709 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (479)
Q Consensus 139 h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg 218 (479)
+++.+..|.+.+ ++.+++++ .+|.|.. ..+.+. .-.....++.. .+..+++.+++.+++.+...+
T Consensus 120 ~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~-----------tW~~~~~~~~~-~~~~~~~~~~~~~~~~g~~G~ 184 (327)
T 2xbg_A 120 LPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGK-----------NWQALVQEAIG-VMRNLNRSPSGEYVAVSSRGS 184 (327)
T ss_dssp CSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTS-----------SEEEEECSCCC-CEEEEEECTTSCEEEEETTSS
T ss_pred CCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCC-----------CCEEeecCCCc-ceEEEEEcCCCcEEEEECCCc
Confidence 345677787766 55566655 4554432 122221 11112223333 478999999888777665433
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (479)
..+-+|-. +. +...+ -......+..+.+.+++ . ++.++
T Consensus 185 ~~~S~d~g-G~-------------------------------------tW~~~--~~~~~~~~~~~~~~~~g-~-~~~~~ 222 (327)
T 2xbg_A 185 FYSTWEPG-QT-------------------------------------AWEPH--NRTTSRRLHNMGFTPDG-R-LWMIV 222 (327)
T ss_dssp EEEEECTT-CS-------------------------------------SCEEE--ECCSSSCEEEEEECTTS-C-EEEEE
T ss_pred EEEEeCCC-CC-------------------------------------ceeEC--CCCCCCccceeEECCCC-C-EEEEe
Confidence 33333321 00 00000 11234567888888877 4 44556
Q ss_pred cCCeEEEEeCCCCC-CCceeee-ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec---CCCC
Q 011709 299 DDSCLILWDARVGT-SPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---GHSA 373 (479)
Q Consensus 299 ~dg~i~iwd~~~~~-~~~~~~~-~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~ 373 (479)
.+|.+.+.+...+. ...+... ..+...+.++++.+ ++.+++++. +|.|. +.... +..-..+. .+..
T Consensus 223 ~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i~-~S~Dg------G~tW~~~~~~~~~~~ 293 (327)
T 2xbg_A 223 NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGALL-CSQDG------GQTWQQDVDVKKVPS 293 (327)
T ss_dssp TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCEE-EESST------TSSCEECGGGTTSSS
T ss_pred CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeEE-EeCCC------CcccEEcCccCCCCC
Confidence 77888777422122 0011110 01234588999998 666666654 67663 33332 22222222 2345
Q ss_pred cEEEEEEecCCCcEEEEEeCCCCEEEEeC
Q 011709 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDY 402 (479)
Q Consensus 374 ~v~~l~~~p~~~~llas~s~Dg~v~iwd~ 402 (479)
.+.++.|.+++. + +.++.+|.|.-++-
T Consensus 294 ~~~~v~~~~~~~-~-~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 294 NFYKILFFSPDQ-G-FILGQKGILLRYVT 320 (327)
T ss_dssp CCCEEEEEETTE-E-EEECSTTEEEEECC
T ss_pred CeEEEEEECCCc-e-EEEcCCceEEEEcC
Confidence 678899986554 4 46667898776664
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.27 E-value=0.054 Score=49.58 Aligned_cols=167 Identities=10% Similarity=0.141 Sum_probs=98.3
Q ss_pred CceEEEEEeeC----CC---cEEEEEec--CCeEEEEeCC--CCCCCceeeecc------CC-CCeEEEEe--cCCCCc-
Q 011709 279 DTVEDVTFCPS----SA---QEFCSVGD--DSCLILWDAR--VGTSPVIKVEKA------HD-ADLHCVDW--NPLDDN- 337 (479)
Q Consensus 279 ~~v~~l~~~~~----~~---~~l~s~~~--dg~i~iwd~~--~~~~~~~~~~~~------~~-~~v~~l~~--sp~~~~- 337 (479)
+.++.+..-|. +. ..+++... +++|++|++. ++. +..... .. ..+..+++ +|..+.
T Consensus 68 g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~ 144 (355)
T 3amr_A 68 GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---LQSMTDPDHPIATAINEVYGFTLYHSQKTGKY 144 (355)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---EEECSCTTSCEECCCSSCCCEEEEECTTTCCE
T ss_pred CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---eeeccccccCcCCCCCCeeEEEEEecCCCCcE
Confidence 45666666652 11 12344444 6899999774 333 222211 11 55667777 774443
Q ss_pred EEEEEeCCCcEEEEecCCCCCC-CCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCC
Q 011709 338 LILTGSADNSVRMFDRRNLTSN-GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT 416 (479)
Q Consensus 338 ~l~tgs~dg~I~iwd~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~ 416 (479)
++++...+|.+..|++...... ...+.+.++.. .+.+-.+...+....|+ .+-.|.-|..+|..-.+
T Consensus 145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly-v~eEd~GIw~~da~p~~---------- 212 (355)
T 3amr_A 145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY-IAEEDEAIWKFSAEPDG---------- 212 (355)
T ss_dssp EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE-EEETTTEEEEEECSTTS----------
T ss_pred EEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE-EecccceEEEEeCCcCC----------
Confidence 7888888999999999542110 11355667664 35788899998887655 67777545444433210
Q ss_pred CCCCeeEEEeC-CC--CCceeEEE--ecCCC-eeeecCCCccccceeEEEEeec
Q 011709 417 NYPAGLFFQHA-GH--SPSSSIKF--VLRES-CLVDNNHGLSYANKKIKIYCHL 464 (479)
Q Consensus 417 ~~~~~l~~~~~-gh--~~~~~~~~--sp~~~-~l~~~~~~~~~~d~~i~i~~~~ 464 (479)
.....++-... ++ ..+..++. .++++ +|++++.+ +++..+|+..
T Consensus 213 ~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG----~~s~~Vydr~ 262 (355)
T 3amr_A 213 GSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG----NSSYAIYDRQ 262 (355)
T ss_dssp CSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG----GTEEEEEESS
T ss_pred CCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC----CCEEEEEECC
Confidence 01123333332 22 23677777 45555 78888876 8899999774
No 300
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.18 E-value=0.11 Score=48.34 Aligned_cols=244 Identities=11% Similarity=0.115 Sum_probs=121.9
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEe--ccCCCceeeeeecCC---CCcEEEecC
Q 011709 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPT---EPYVLSGGK 216 (479)
Q Consensus 142 ~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~l~~s~~---~~~l~s~s~ 216 (479)
....|+|.| +++++++- .+|.|++++ .+.. .....+. .........|+|+|+ +..|..+..
T Consensus 32 ~P~~ia~~p-dG~l~V~e-~~g~I~~i~--~g~~----------~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~ 97 (352)
T 2ism_A 32 VPWALAFLP-DGGMLIAE-RPGRIRLFR--EGRL----------STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRT 97 (352)
T ss_dssp CEEEEEECT-TSCEEEEE-TTTEEEEEE--TTEE----------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEEcC-CCeEEEEe-CCCeEEEEE--CCCc----------cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEe
Confidence 467899999 67766654 558999998 3310 1111110 111123679999998 555554433
Q ss_pred -C-----CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec---CCCCceEEEEEe
Q 011709 217 -D-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN---GHEDTVEDVTFC 287 (479)
Q Consensus 217 -d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~ 287 (479)
. +.|..++....... .. ..+ +..+. +.......++|.
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~---~~----------~~l---------------------~~~~p~~~~~~h~~~~l~~~ 143 (352)
T 2ism_A 98 VAEGGLRNQVVRLRHLGERGV---LD----------RVV---------------------LDGIPARPHGLHSGGRIAFG 143 (352)
T ss_dssp ECTTSSEEEEEEEEECSSCEE---EE----------EEE---------------------EEEECCCTTCCCCCCCEEEC
T ss_pred cCCCCCccEEEEEEeCCCCcC---ce----------EEE---------------------EEeCCCCCCCCcCCceEEEC
Confidence 2 56777776532100 00 000 00011 111123588999
Q ss_pred eCCCcEEEEEec-------------CCeEEEEeCCCC------------CCCceeeeccCCCCeEEEEecCCCCcEEEEE
Q 011709 288 PSSAQEFCSVGD-------------DSCLILWDARVG------------TSPVIKVEKAHDADLHCVDWNPLDDNLILTG 342 (479)
Q Consensus 288 ~~~~~~l~s~~~-------------dg~i~iwd~~~~------------~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tg 342 (479)
|+| .++++.+. .|.|..+|.... ....+ ...++ .....++|+|.++.++++-
T Consensus 144 pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i-~a~G~-rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 144 PDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEV-YSLGH-RNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp TTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTE-EEECC-SEECCCEECTTTCCEEEEE
T ss_pred CCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccE-EEEcC-CCcccEEEECCCCCEEEEE
Confidence 999 56665432 256666666431 00011 11233 2356789998445555554
Q ss_pred eCCCc--------EEEEecCCCCC------------CCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeC
Q 011709 343 SADNS--------VRMFDRRNLTS------------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 402 (479)
Q Consensus 343 s~dg~--------I~iwd~~~~~~------------~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~ 402 (479)
..... |.+.. .... .....++..+.. ......++| .++. ++++.-..+.|...++
T Consensus 221 ~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~-~~ap~G~~~-~~G~-l~v~~~~~~~v~~v~~ 295 (352)
T 2ism_A 221 HGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLYFWPQ-GFPPGNLAF-FRGD-LYVAGLRGQALLRLVL 295 (352)
T ss_dssp ECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT-CCCEEEEEE-ETTE-EEEEETTTTEEEEEEE
T ss_pred cCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeEecCC-CCCCcceEE-ECCE-EEEEECCCCEEEEEEE
Confidence 33333 33322 1110 000134444533 345678888 4554 6666666777877777
Q ss_pred CCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 403 EKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
...+..... ...+.++ .....+.++++.|||...++...
T Consensus 296 ~~~~~~~~~------~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 296 EGERGRWRV------LRVETAL--SGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp EEETTEEEE------EEEEEEE--ESSCCEEEEEECTTSCEEEEECS
T ss_pred CCCCcceee------cchheec--ccCCCeeEEEECCCCcEEEEEeC
Confidence 653211100 0011122 23345799999999987776543
No 301
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.10 E-value=0.086 Score=49.40 Aligned_cols=162 Identities=12% Similarity=0.098 Sum_probs=94.5
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEecc---CCCceeeeeecCCCCcEEEecCCCcEEEEecCCC
Q 011709 152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH---QDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH 228 (479)
Q Consensus 152 ~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h---~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~ 228 (479)
++.-|+.+-. +.||.-++... ..-+.+... ....|..+..+|+|++||..+ +..|.|-.+..+
T Consensus 31 n~t~i~~a~~-n~iR~~~i~~~------------~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~ 96 (452)
T 3pbp_A 31 NGTRIVFIQD-NIIRWYNVLTD------------SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWG 96 (452)
T ss_dssp TTTEEEEEET-TEEEEEETTTC------------SSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTT
T ss_pred CCCEEEEEEC-CEEEEEECCCC------------CcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCc
Confidence 4444544433 47777777643 112233332 122467899999999999887 568999988633
Q ss_pred ccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCC--cEEEEEecCCeEEEE
Q 011709 229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA--QEFCSVGDDSCLILW 306 (479)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~iw 306 (479)
........ . ........ +... + ........|..+.|||-+. ..|++-..|+.|++|
T Consensus 97 ~~~~~~~~--~---~~~~q~~t------------y~l~---~--~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~y 154 (452)
T 3pbp_A 97 YSNVEDVS--I---QDAFQIFH------------YSID---E--EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMF 154 (452)
T ss_dssp CSCCCCHH--H---HHTTEEEE------------EEGG---G--CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEE
T ss_pred cccCcccc--c---ccccceeE------------EEcC---C--cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEE
Confidence 21110000 0 00000000 0000 0 0011356899999999653 379999999999999
Q ss_pred eCCCCCCCceeee---------ccCCCCeEEEEecCCCCcEEEEEe--CCCcEEEE
Q 011709 307 DARVGTSPVIKVE---------KAHDADLHCVDWNPLDDNLILTGS--ADNSVRMF 351 (479)
Q Consensus 307 d~~~~~~~~~~~~---------~~~~~~v~~l~~sp~~~~~l~tgs--~dg~I~iw 351 (479)
|+........ .+ ......|.+++|.+ ++-.|+..+ ..|.|+-.
T Consensus 155 Dl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 155 DILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEE
T ss_pred EcccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEE
Confidence 9986331112 22 12336789999999 887777755 77888764
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.07 E-value=0.13 Score=47.56 Aligned_cols=111 Identities=10% Similarity=0.172 Sum_probs=66.5
Q ss_pred CceEEEEEeeCCCcEEEEEe-----------------cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEE
Q 011709 279 DTVEDVTFCPSSAQEFCSVG-----------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT 341 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~t 341 (479)
...+++++.++| .++++.. ..|.|..+|.. + +. .....-..-+.++|+| +++.|+.
T Consensus 165 ~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~--~~-~~~~~l~~pNGia~sp-Dg~~lYv 237 (355)
T 3sre_A 165 PSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D--VR-VVAEGFDFANGINISP-DGKYVYI 237 (355)
T ss_dssp SSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C--CE-EEEEEESSEEEEEECT-TSSEEEE
T ss_pred CCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEECC--e--EE-EeecCCcccCcceECC-CCCEEEE
Confidence 358999999998 6666543 12556666652 3 22 2223334578999999 8866665
Q ss_pred Ee-CCCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEec-CCCcEEEEEeCC-CCEEEEe
Q 011709 342 GS-ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAED-GLLNIWD 401 (479)
Q Consensus 342 gs-~dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~llas~s~D-g~v~iwd 401 (479)
+. ..+.|+.||+..... ......+. ..+..-.+++++ +|. +.+++..+ +.|..||
T Consensus 238 adt~~~~I~~~~~~~~g~---l~~~~~~~-~~g~PDGi~vD~e~G~-lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWT---LTPLRVLS-FDTLVDNISVDPVTGD-LWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEGGGTEEEEEEECTTSC---EEEEEEEE-CSSEEEEEEECTTTCC-EEEEEESCHHHHHSCC
T ss_pred EeCCCCeEEEEEECCCCc---EecCEEEe-CCCCCceEEEeCCCCc-EEEEecCCceEEEEEC
Confidence 55 578999999874110 11122332 245678899998 487 55555433 3444444
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.92 E-value=0.16 Score=46.94 Aligned_cols=146 Identities=7% Similarity=-0.017 Sum_probs=84.3
Q ss_pred ceEEEEEee--CCC-cEEEEEec--CCeEEEEeCCCCCC--CceeeeccC-CCCeEEEEecCCCCcEEEEEeC-------
Q 011709 280 TVEDVTFCP--SSA-QEFCSVGD--DSCLILWDARVGTS--PVIKVEKAH-DADLHCVDWNPLDDNLILTGSA------- 344 (479)
Q Consensus 280 ~v~~l~~~~--~~~-~~l~s~~~--dg~i~iwd~~~~~~--~~~~~~~~~-~~~v~~l~~sp~~~~~l~tgs~------- 344 (479)
....+.+.+ ++. +++++-.. +.+|.+|++..... ..+....+. -...+.+.+.+ ++.+.++...
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHH
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCccc
Confidence 456677766 343 24444333 56788887765432 122233222 24578999999 8887776541
Q ss_pred ----------CCcEEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCC
Q 011709 345 ----------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR 414 (479)
Q Consensus 345 ----------dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~ 414 (479)
.|.|.-+|.. + +..+...-...+.++|+|+++.++++-+..+.|..|++...+....
T Consensus 192 ~~~e~~~~~~~g~vyr~d~~--------~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~---- 258 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSPN--------D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP---- 258 (355)
T ss_dssp HHHHHHTTCCCEEEEEECTT--------C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE----
T ss_pred ccchhhccCCccEEEEEECC--------e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec----
Confidence 2344444432 1 2222223345789999999998888888889999999875332111
Q ss_pred CCCCCCeeEEEeCCCCCceeEEEec-CCCeeeec
Q 011709 415 TTNYPAGLFFQHAGHSPSSSIKFVL-RESCLVDN 447 (479)
Q Consensus 415 ~~~~~~~l~~~~~gh~~~~~~~~sp-~~~~l~~~ 447 (479)
.-.|.. ....-.++..+ +|...+++
T Consensus 259 ------~~~~~~--~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 259 ------LRVLSF--DTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp ------EEEEEC--SSEEEEEEECTTTCCEEEEE
T ss_pred ------CEEEeC--CCCCceEEEeCCCCcEEEEe
Confidence 112221 12246677777 47666544
No 304
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.87 E-value=0.24 Score=44.55 Aligned_cols=103 Identities=12% Similarity=0.130 Sum_probs=55.8
Q ss_pred cEEEEEecC-----CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC-----CcEEEEecCCCCCCCC
Q 011709 292 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV 361 (479)
Q Consensus 292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d-----g~I~iwd~~~~~~~~~ 361 (479)
.+++.|+.+ ..+.+||+.+.++..+...........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~---- 186 (301)
T 2vpj_A 114 MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGH---- 186 (301)
T ss_dssp EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCc----
Confidence 667777644 3688999988774333222211122223333 56777777765 458899987622
Q ss_pred CCceeeecCCCCcEEEEEEecCCCcEEEEEeCC-----CCEEEEeCCC
Q 011709 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (479)
Q Consensus 362 ~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D-----g~v~iwd~~~ 404 (479)
...+..+.........+.+ ++ .|++.|+.+ ..+.+||+.+
T Consensus 187 W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~ 231 (301)
T 2vpj_A 187 WTNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRT 231 (301)
T ss_dssp EEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTT
T ss_pred EEeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCC
Confidence 2222222211111222222 33 477788764 4688999876
No 305
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.85 E-value=0.25 Score=44.52 Aligned_cols=103 Identities=9% Similarity=0.087 Sum_probs=54.3
Q ss_pred cEEEEEecCC-----eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC-------CcEEEEecCCCCCC
Q 011709 292 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-------NSVRMFDRRNLTSN 359 (479)
Q Consensus 292 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d-------g~I~iwd~~~~~~~ 359 (479)
.+++.|+.++ .+.+||+.+.++..+..+........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 110 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-- 184 (302)
T 2xn4_A 110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNE-- 184 (302)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTE--
T ss_pred EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCc--
Confidence 6677776553 578899988764322222111122223333 56677777653 358899987621
Q ss_pred CCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC-----CCEEEEeCCC
Q 011709 360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (479)
Q Consensus 360 ~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D-----g~v~iwd~~~ 404 (479)
...+..+.........+.+ ++ .|++.|+.+ ..+.+||+.+
T Consensus 185 --W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 185 --WTYIAEMSTRRSGAGVGVL--NN-LLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp --EEEECCCSSCCBSCEEEEE--TT-EEEEECCBSSSSBCCCEEEEETTT
T ss_pred --EEECCCCccccccccEEEE--CC-EEEEECCCCCCcccceEEEEeCCC
Confidence 1222222211111222222 33 477788765 3688999876
No 306
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.74 E-value=0.33 Score=44.36 Aligned_cols=106 Identities=10% Similarity=0.119 Sum_probs=61.6
Q ss_pred ceEEEEEeeCCCcEEEEEecCCeEE-EEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEec--CCC
Q 011709 280 TVEDVTFCPSSAQEFCSVGDDSCLI-LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR--RNL 356 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~--~~~ 356 (479)
.+..+.+.+++ .+++.+ .+|.|. -.| .+. .-..........+..+++.| ++.+++.+...+..+-.|- .+
T Consensus 123 ~~~~i~~~~~~-~~~~~~-~~g~v~~S~D--gG~-tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~t- 195 (327)
T 2xbg_A 123 SPRLIKALGNG-SAEMIT-NVGAIYRTKD--SGK-NWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTA- 195 (327)
T ss_dssp CEEEEEEEETT-EEEEEE-TTCCEEEESS--TTS-SEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSS-
T ss_pred CeEEEEEECCC-CEEEEe-CCccEEEEcC--CCC-CCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCc-
Confidence 46677777766 555544 455443 222 222 12222334566789999999 7777776654444444443 22
Q ss_pred CCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEe
Q 011709 357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd 401 (479)
.+.+. ......+..+.+.+++. ++ .++.+|.+++.+
T Consensus 196 -----W~~~~--~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 196 -----WEPHN--RTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSD 231 (327)
T ss_dssp -----CEEEE--CCSSSCEEEEEECTTSC-EE-EEETTTEEEEEE
T ss_pred -----eeECC--CCCCCccceeEECCCCC-EE-EEeCCceEEEec
Confidence 22322 23456788999999887 45 455678777764
No 307
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.71 E-value=0.33 Score=45.56 Aligned_cols=159 Identities=13% Similarity=0.088 Sum_probs=93.7
Q ss_pred eeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccC----CCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCC
Q 011709 287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH----DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG 362 (479)
Q Consensus 287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~ 362 (479)
+.+|.. ++.+ .++.||.-++.... ..+.+... -..|..+..+| +|.+||..+ +..|.|..+.........
T Consensus 29 ~~n~t~-i~~a-~~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 29 SQNGTR-IVFI-QDNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp ETTTTE-EEEE-ETTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EcCCCE-EEEE-ECCEEEEEECCCCC--cceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 344433 3333 34788888887543 23333322 23678899999 999999886 458888888732111100
Q ss_pred ------CceeeecC------CCCcEEEEEEecCCCc--EEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCC
Q 011709 363 ------SPINKFEG------HSAAVLCVQWSPDKSS--VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG 428 (479)
Q Consensus 363 ------~~~~~~~~------h~~~v~~l~~~p~~~~--llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~g 428 (479)
-....+.- ...+|..+.|||-+.. .|++-..|+.|++||+...-....... .. .-.|....
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~----k~-~~~fg~d~ 177 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLN----KP-NNSFGLDA 177 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEES----CC-CSEEESCS
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchh----cc-ccccCCCc
Confidence 01122221 2467999999997543 466888899999999997211111000 11 11343333
Q ss_pred C-CCceeEEEecCCCeeee--cCCCccccceeEEEE
Q 011709 429 H-SPSSSIKFVLRESCLVD--NNHGLSYANKKIKIY 461 (479)
Q Consensus 429 h-~~~~~~~~sp~~~~l~~--~~~~~~~~d~~i~i~ 461 (479)
+ ..+.+++|.+++-.|.. ... .|.|.-.
T Consensus 178 ~~~ev~S~~Fg~~~lTLYvl~~t~-----~GDIYAl 208 (452)
T 3pbp_A 178 RVNDITDLEFSKDGLTLYCLNTTE-----GGDIFAF 208 (452)
T ss_dssp SCCCEEEEEECTTSSCEEEEECTT-----SCEEEEE
T ss_pred ccceEEEEEEcCCCcEEEEEecCC-----CCCEEEE
Confidence 3 33889999998766666 445 5666544
No 308
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.58 E-value=0.3 Score=44.13 Aligned_cols=103 Identities=10% Similarity=0.108 Sum_probs=54.6
Q ss_pred cEEEEEecC-----CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC-----CcEEEEecCCCCCCCC
Q 011709 292 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV 361 (479)
Q Consensus 292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d-----g~I~iwd~~~~~~~~~ 361 (479)
.+++.|+.+ ..+.+||+.+.++..+..+........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 123 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~---- 195 (308)
T 1zgk_A 123 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE---- 195 (308)
T ss_dssp EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe----
Confidence 566666643 3688999988763222222111122223333 56777777765 458899987621
Q ss_pred CCceeeecCCCCcEEEEEEecCCCcEEEEEeCC-----CCEEEEeCCC
Q 011709 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (479)
Q Consensus 362 ~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D-----g~v~iwd~~~ 404 (479)
...+..+.........+.+ ++ .|++.|+.+ ..+.+||+.+
T Consensus 196 W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 196 WRMITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTT
T ss_pred EeeCCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCC
Confidence 1122222211112222333 33 477788765 4688999876
No 309
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.57 E-value=1.1 Score=48.70 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=48.9
Q ss_pred EEecCCCceeEEEecCC-----CCcEEEEEeC-CCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeec--C
Q 011709 135 KTIIHPGEVNRIRELPQ-----NTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC--P 206 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~-----~~~~lat~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s--~ 206 (479)
....-+++|.|+++.|. .+.++|.|.. |++|+|+++.+.+... ...+... ....++.+. .
T Consensus 548 ~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~----------~~~L~~~--~~p~si~l~~~~ 615 (1158)
T 3ei3_A 548 SHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH----------KEMLGGE--IIPRSILMTTFE 615 (1158)
T ss_dssp EEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE----------EEECCSS--CCEEEEEEEEET
T ss_pred cccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE----------EEECCCC--CCCcEEEEEEeC
Confidence 33445678999998763 2479999996 9999999998542111 1111110 112233222 2
Q ss_pred CCCcEEEecCCCcEEEEecC
Q 011709 207 TEPYVLSGGKDKSVVLWSIQ 226 (479)
Q Consensus 207 ~~~~l~s~s~dg~i~vwd~~ 226 (479)
...+|..|-.||.+.-+.++
T Consensus 616 ~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 616 SSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TEEEEEEEETTSEEEEEEEC
T ss_pred CCcEEEEEeCCCeEEEEEEc
Confidence 23478899999998766654
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.57 E-value=0.47 Score=43.93 Aligned_cols=249 Identities=10% Similarity=0.074 Sum_probs=122.1
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEE--eccCCCceeeeeecCC---CCcEEEec
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL--TGHQDNAEFALAMCPT---EPYVLSGG 215 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~v~~l~~s~~---~~~l~s~s 215 (479)
.....|+|.| +++++++- .+|.|+++|. .+. . ....+ ..........|+++|+ +..|..+.
T Consensus 29 ~~P~~ia~~p-dG~l~V~e-~~g~I~~~d~-~G~--~---------~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~ 94 (354)
T 3a9g_A 29 EVPWSIAPLG-GGRYLVTE-RPGRLVLISP-SGK--K---------LVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA 94 (354)
T ss_dssp SCEEEEEEEE-TTEEEEEE-TTTEEEEECS-SCE--E---------EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCCeEEEEcC-CCeEEEEe-CCCEEEEEeC-CCc--e---------EeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence 4567899999 77766654 4589999873 331 0 01110 0111123679999998 55554443
Q ss_pred C----C----CcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeec-CCCCceEEEEE
Q 011709 216 K----D----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTF 286 (479)
Q Consensus 216 ~----d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~ 286 (479)
. + ..|..|+.......... . ..+ +..+. +.......|+|
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~-~----------~~l---------------------~~~~~~~~~h~~~~l~~ 142 (354)
T 3a9g_A 95 SYFAEGGHIRNRVIRGRLDGSTFKLKE-V----------KTL---------------------IDGIPGAYIHNGGRIRF 142 (354)
T ss_dssp EEECGGGCEEEEEEEEEECSSSCCEEE-E----------EEE---------------------EEEEECCSSCCCCCEEE
T ss_pred eccCCCCCcceEEEEEEECCCCcCcCc-c----------EEE---------------------EEcCCCCCCcCCceEEE
Confidence 2 2 56666766432100000 0 000 00011 11112467899
Q ss_pred eeCCCcEEEEEec-------------CCeEEEEeCCCCC---CC---ceeeeccCCCCeEEEEecCCCCcEEEEEeCCC-
Q 011709 287 CPSSAQEFCSVGD-------------DSCLILWDARVGT---SP---VIKVEKAHDADLHCVDWNPLDDNLILTGSADN- 346 (479)
Q Consensus 287 ~~~~~~~l~s~~~-------------dg~i~iwd~~~~~---~~---~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg- 346 (479)
.|+| .++++.+. .|.|..+|....- .+ ......++. ....++|+|.++.++++-....
T Consensus 143 ~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~ 220 (354)
T 3a9g_A 143 GPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVG 220 (354)
T ss_dssp CTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSS
T ss_pred CCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCC
Confidence 9999 56665432 2556666654320 00 011112333 3467999994455555433322
Q ss_pred --cEEEEecCC--------CCC--CCCCCceeeecCCCCcEEEEEEe-------cCCCcEEEEEeCCCCEEEEeCCCCCc
Q 011709 347 --SVRMFDRRN--------LTS--NGVGSPINKFEGHSAAVLCVQWS-------PDKSSVFGSSAEDGLLNIWDYEKVGK 407 (479)
Q Consensus 347 --~I~iwd~~~--------~~~--~~~~~~~~~~~~h~~~v~~l~~~-------p~~~~llas~s~Dg~v~iwd~~~~~~ 407 (479)
.|.+...-. ... .....++..+.........++|. .++. ++++.-..+.|...++...+.
T Consensus 221 ~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~~g~ 299 (354)
T 3a9g_A 221 HDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGDNME 299 (354)
T ss_dssp CCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECGGGC
T ss_pred CcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECCCCc
Confidence 243322100 000 00013444442223467889884 4554 665666677788888765322
Q ss_pred cccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeeecC
Q 011709 408 KVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNN 448 (479)
Q Consensus 408 ~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~ 448 (479)
.... + .+.......+.++++.|||...++..
T Consensus 300 ~~~~---------~-~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 300 VRKI---------S-TFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEE---------E-EECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ccce---------e-eeccCCCCCeeEEEECCCCcEEEEEe
Confidence 1100 1 11111133478999999998766654
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.43 E-value=0.19 Score=45.23 Aligned_cols=105 Identities=14% Similarity=0.196 Sum_probs=56.2
Q ss_pred CCCcEEEEEecC-----CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC-----CcEEEEecCCCCC
Q 011709 289 SSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTS 358 (479)
Q Consensus 289 ~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d-----g~I~iwd~~~~~~ 358 (479)
++ .+++.|+.+ ..+.+||+.+..+..+..+........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 159 ~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~- 233 (301)
T 2vpj_A 159 SG-VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS- 233 (301)
T ss_dssp TT-EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE-
T ss_pred CC-EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc-
Confidence 44 677777654 4688999988764322222111122233333 56777777764 468999997622
Q ss_pred CCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC-----CCEEEEeCCC
Q 011709 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (479)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D-----g~v~iwd~~~ 404 (479)
...+..+.........+.+ ++. +++.|+.+ ..|.+||+.+
T Consensus 234 ---W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 234 ---WTTVTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp ---EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTT
T ss_pred ---EEECCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCC
Confidence 2222222211112222222 344 77788765 3567888776
No 312
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.38 E-value=0.08 Score=49.20 Aligned_cols=159 Identities=11% Similarity=0.135 Sum_probs=82.5
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeee---ccCCCCeEEEEecCCC----CcEEEEEeCC-----
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLD----DNLILTGSAD----- 345 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~----~~~l~tgs~d----- 345 (479)
-.....++|.|++ .++++ ..+|.|.+++ .+....+... .........|+|+| + +.+.++-...
T Consensus 30 l~~P~~ia~~pdG-~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 30 LEVPWALAFLPDG-GMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp CSCEEEEEECTTS-CEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSE
T ss_pred CCCceEEEEcCCC-eEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCc
Confidence 3456799999999 54444 5669999998 3331111111 12245789999999 6 4444443322
Q ss_pred CcEEEEecCCCCCCCCCCce-eeec---CCCCcEEEEEEecCCCcEEEEEeCC-------------CCEEEEeCCCCCcc
Q 011709 346 NSVRMFDRRNLTSNGVGSPI-NKFE---GHSAAVLCVQWSPDKSSVFGSSAED-------------GLLNIWDYEKVGKK 408 (479)
Q Consensus 346 g~I~iwd~~~~~~~~~~~~~-~~~~---~h~~~v~~l~~~p~~~~llas~s~D-------------g~v~iwd~~~~~~~ 408 (479)
+.|..|+.....- ...+.+ ..+. +.......++|.|+|. |+++.+.. |.|.-+|.. +..
T Consensus 105 ~~v~r~~~~~~~~-~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~d--G~~ 180 (352)
T 2ism_A 105 NQVVRLRHLGERG-VLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPE--GEP 180 (352)
T ss_dssp EEEEEEEECSSCE-EEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTT--SSB
T ss_pred cEEEEEEeCCCCc-CceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCC--CCC
Confidence 5677787763100 000111 1232 1112346899999996 66665432 344444443 211
Q ss_pred ccCCCC--CCCCCCeeEEEeCCCCCceeEEEecCCCeeeec
Q 011709 409 VEQGPR--TTNYPAGLFFQHAGHSPSSSIKFVLRESCLVDN 447 (479)
Q Consensus 409 ~~~~~~--~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~ 447 (479)
...... .....++ ++ ..|+.....++|+|+...|+.+
T Consensus 181 p~~npf~~~~~~~~~-i~-a~G~rnp~g~a~d~~~g~l~v~ 219 (352)
T 2ism_A 181 APGNPFLGRRGARPE-VY-SLGHRNPQGLAWHPKTGELFSS 219 (352)
T ss_dssp CTTCTTTTCTTSCTT-EE-EECCSEECCCEECTTTCCEEEE
T ss_pred CCCCcccCCCCCCcc-EE-EEcCCCcccEEEECCCCCEEEE
Confidence 110000 0001112 22 3577888999999943334443
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.17 E-value=0.8 Score=42.37 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=21.8
Q ss_pred eeeeeecCCCCcEEEecCCCcEEEEecC
Q 011709 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQ 226 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~s~dg~i~vwd~~ 226 (479)
...|+|.|+|++|+.+...|.|++++..
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 4799999999845555668999998853
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.11 E-value=0.39 Score=44.20 Aligned_cols=165 Identities=13% Similarity=0.196 Sum_probs=88.2
Q ss_pred eecCCCCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeee----ccCCCCeEEEEecCC---CCcEEEEEe--
Q 011709 273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE----KAHDADLHCVDWNPL---DDNLILTGS-- 343 (479)
Q Consensus 273 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~l~~sp~---~~~~l~tgs-- 343 (479)
.+...-.....|+|.|++ .+|++-...|.|++++...+....+..+ .........|+++|. ++.+.++-+
T Consensus 26 ~va~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EeecCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 333344567899999999 5666665589999998765552112111 234567899999992 243333322
Q ss_pred CCCcEEEEecCCCCC--CC--CCCce-eeec-CCCCcEEEEEEecCCCcEEEEEeCC-------------CCEEEEeCCC
Q 011709 344 ADNSVRMFDRRNLTS--NG--VGSPI-NKFE-GHSAAVLCVQWSPDKSSVFGSSAED-------------GLLNIWDYEK 404 (479)
Q Consensus 344 ~dg~I~iwd~~~~~~--~~--~~~~~-~~~~-~h~~~v~~l~~~p~~~~llas~s~D-------------g~v~iwd~~~ 404 (479)
.++.|.-|.+..... .. ..+.+ ..+. .....-..|+|.|+|. |+++.+.. |.|.=.+..
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d- 182 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPD- 182 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTT-
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCC-
Confidence 344555565543110 00 01111 1222 1122346799999997 66665532 333333322
Q ss_pred CCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCCCeeee
Q 011709 405 VGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRESCLVD 446 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~ 446 (479)
+....... .+...++ ..||+....++|+|++...++
T Consensus 183 -G~ip~~nP----f~~~~i~-a~G~RNp~Gla~dp~G~L~~~ 218 (347)
T 3das_A 183 -GEPAPGNP----FPGSPVY-SYGHRNVQGLAWDDKQRLFAS 218 (347)
T ss_dssp -SSBCTTCS----STTCCEE-EBCCSBCCEEEECTTCCEEEE
T ss_pred -CCccCCCC----CCCCeEE-eeCCCCcceEEECCCCCEEEE
Confidence 21110000 0011233 458999999999998765554
No 315
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.10 E-value=0.21 Score=46.29 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=81.8
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeee---ccCCCCeEEEEecCCC----CcEEEEEeC---C--
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLD----DNLILTGSA---D-- 345 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~----~~~l~tgs~---d-- 345 (479)
-.....++|.|++ .+++ +..+|.|+++|. ++. ..+..+ .........|+++| + +.+.++-+. +
T Consensus 28 l~~P~~ia~~pdG-~l~V-~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 28 LEVPWSIAPLGGG-RYLV-TERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp CSCEEEEEEEETT-EEEE-EETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGC
T ss_pred CCCCeEEEEcCCC-eEEE-EeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCC
Confidence 3457899999998 5444 456699999973 333 122211 12245688999999 5 444444332 3
Q ss_pred --CcEEEEecCCCCCCC-CCCce-eeec-CCCCcEEEEEEecCCCcEEEEEeCC-------------CCEEEEeCCCCCc
Q 011709 346 --NSVRMFDRRNLTSNG-VGSPI-NKFE-GHSAAVLCVQWSPDKSSVFGSSAED-------------GLLNIWDYEKVGK 407 (479)
Q Consensus 346 --g~I~iwd~~~~~~~~-~~~~~-~~~~-~h~~~v~~l~~~p~~~~llas~s~D-------------g~v~iwd~~~~~~ 407 (479)
..|..|+........ ..+.+ ..+. ........|+|.|+|. |+++.+.. |.|.-+|.. +.
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d--G~ 179 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEE--GR 179 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTT--SC
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCC--CC
Confidence 567777765421000 00111 1122 1112346799999997 66665432 334444432 21
Q ss_pred cccCCCCCCCCCCeeEEEeCCCCCceeEEEec-CCCeeee
Q 011709 408 KVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVL-RESCLVD 446 (479)
Q Consensus 408 ~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp-~~~~l~~ 446 (479)
.... . . .....++ ..|+.....++|+| ++...++
T Consensus 180 ~p~~--n-p-f~~~~i~-a~G~rnp~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 180 PPAD--N-P-FPNSPIW-SYGHRNPQGIDWHRASGVMVAT 214 (354)
T ss_dssp CCTT--S-S-STTCCEE-EECCSCCCEEEECTTTCCEEEE
T ss_pred CCCC--C-C-CCCCcEE-EEccCCcceEEEeCCCCCEEEE
Confidence 1000 0 0 0011223 45788889999999 5554443
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.08 E-value=0.44 Score=45.87 Aligned_cols=113 Identities=10% Similarity=0.158 Sum_probs=62.1
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeec------cCCCCeEEEEecCCC---CcEEEEEeC----
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK------AHDADLHCVDWNPLD---DNLILTGSA---- 344 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~l~~sp~~---~~~l~tgs~---- 344 (479)
-.....|+|.|+| .++++-...+.|++++..++....+..+. .....+..|+|+| + +..|+....
T Consensus 26 l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEecccc
Confidence 3456799999999 56665544457888887655421222221 1356788999999 4 444444432
Q ss_pred ---------CCcEEEEecCCCCCC-CCCCcee-eec-CCCCcEEEEEEecCCCcEEEEEeC
Q 011709 345 ---------DNSVRMFDRRNLTSN-GVGSPIN-KFE-GHSAAVLCVQWSPDKSSVFGSSAE 393 (479)
Q Consensus 345 ---------dg~I~iwd~~~~~~~-~~~~~~~-~~~-~h~~~v~~l~~~p~~~~llas~s~ 393 (479)
...|.-|+....... ...+.+. .+. ........|+|.|+|. |+++.+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECC
Confidence 134555655431100 0001121 122 1123578999999997 5666553
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.07 E-value=0.2 Score=45.13 Aligned_cols=103 Identities=13% Similarity=0.129 Sum_probs=54.4
Q ss_pred cEEEEEecC-------CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC-----CcEEEEecCCCCCC
Q 011709 292 QEFCSVGDD-------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSN 359 (479)
Q Consensus 292 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d-----g~I~iwd~~~~~~~ 359 (479)
.+++.|+.+ ..+.+||+.+..+..+..+........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~-- 231 (302)
T 2xn4_A 157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA-- 231 (302)
T ss_dssp EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE--
T ss_pred EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC--
Confidence 566666542 3588999988764322222111122223333 56777887765 368899987621
Q ss_pred CCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCC-----CEEEEeCCC
Q 011709 360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEK 404 (479)
Q Consensus 360 ~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg-----~v~iwd~~~ 404 (479)
...+..+.........+.+ ++. |++.|+.++ .+.+||+.+
T Consensus 232 --W~~~~~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 232 --WRQVADMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp --EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTT
T ss_pred --EeeCCCCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCC
Confidence 1222222111111112222 344 777887653 488888876
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.02 E-value=0.81 Score=41.12 Aligned_cols=103 Identities=13% Similarity=0.129 Sum_probs=54.0
Q ss_pred cEEEEEecC------CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC---------CCcEEEEecCCC
Q 011709 292 QEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---------DNSVRMFDRRNL 356 (479)
Q Consensus 292 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~---------dg~I~iwd~~~~ 356 (479)
.+++.|+.+ ..+.+||..+.++..+..+........++.+ ++.+++.|+. -..+.+||+.+.
T Consensus 103 ~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 103 KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 677777655 4688999988764222222111122222333 5567777764 345889998762
Q ss_pred CCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC-----CCEEEEeCCC
Q 011709 357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (479)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D-----g~v~iwd~~~ 404 (479)
. ...+..+.........+.+ ++. |++.|+.+ ..+.+||+.+
T Consensus 180 ~----W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 180 T----WTELCPMIEARKNHGLVFV--KDK-IFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp E----EEEECCCSSCCBSCEEEEE--TTE-EEEECCEETTEEBCCEEEEETTT
T ss_pred e----EEECCCccchhhcceEEEE--CCE-EEEEeCCCCCCCCceEEEeeCCC
Confidence 1 2222222211111122222 333 77777754 3588899876
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.00 E-value=0.26 Score=44.44 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=54.6
Q ss_pred cEEEEEec---------CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC-----CcEEEEecCCCC
Q 011709 292 QEFCSVGD---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLT 357 (479)
Q Consensus 292 ~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d-----g~I~iwd~~~~~ 357 (479)
.+++.|+. -..+.+||+.+..+..+..+.........+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 56666653 34588999988764322222111122223333 56777777754 368899987622
Q ss_pred CCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC-----CCEEEEeCCC
Q 011709 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (479)
Q Consensus 358 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D-----g~v~iwd~~~ 404 (479)
...+..+.........+.+ ++ .|++.|+.+ ..+.+||+.+
T Consensus 228 ----W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 228 ----WKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp ----EEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTT
T ss_pred ----EEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCC
Confidence 2222222222222223333 33 477788854 4578888876
No 320
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.50 E-value=0.89 Score=43.68 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=60.2
Q ss_pred eeeeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCC
Q 011709 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE 278 (479)
Q Consensus 199 v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (479)
..+|+|.|+|+++++-...+.|.+++..++........ . .........
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~-----------------------------~---~~~~~~~g~ 76 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQV-----------------------------P---EIVNDADGQ 76 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-----------------------------T---TCCCCTTSS
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecC-----------------------------C---ccccccCCC
Confidence 47999999998666654435788887543221100000 0 000000124
Q ss_pred CceEEEEEeeC---CCcEEEEEec------------CCeEEEEeCCCCCC------Cceeeec-cCCCCeEEEEecCCCC
Q 011709 279 DTVEDVTFCPS---SAQEFCSVGD------------DSCLILWDARVGTS------PVIKVEK-AHDADLHCVDWNPLDD 336 (479)
Q Consensus 279 ~~v~~l~~~~~---~~~~l~s~~~------------dg~i~iwd~~~~~~------~~~~~~~-~~~~~v~~l~~sp~~~ 336 (479)
.....|+|+|+ +..++++-+. ...|..++...... .++..+. ........|+|.| ++
T Consensus 77 ~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG 155 (454)
T 1cru_A 77 NGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQ 155 (454)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TS
T ss_pred CceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CC
Confidence 56789999995 4355555543 23566666543210 1111111 1223478999999 88
Q ss_pred cEEEEEeC
Q 011709 337 NLILTGSA 344 (479)
Q Consensus 337 ~~l~tgs~ 344 (479)
.+.++.++
T Consensus 156 ~Lyv~~Gd 163 (454)
T 1cru_A 156 KIYYTIGD 163 (454)
T ss_dssp CEEEEECC
T ss_pred eEEEEECC
Confidence 77776554
No 321
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.44 E-value=1.4 Score=39.74 Aligned_cols=208 Identities=14% Similarity=0.192 Sum_probs=124.3
Q ss_pred EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCC---CceeeeeecCCCCc
Q 011709 134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD---NAEFALAMCPTEPY 210 (479)
Q Consensus 134 ~~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~---~~v~~l~~s~~~~~ 210 (479)
++....+.+|.-=+|.. .+.|+--+.. .|+-|++... ..+...+..|.. .-|....-+++.++
T Consensus 100 lks~~~~e~VvfWkWis--~~~L~lVT~t-aVyHWs~~~~-----------s~P~kvFdR~~~L~~~QIInY~~d~~~kW 165 (365)
T 2xzh_A 100 MKAHTMTDDVTFWKWIS--LNTVALVTDN-AVYHWSMEGE-----------SQPVKMFDRHSSLAGCQIINYRTDAKQKW 165 (365)
T ss_dssp EEEEECSSCEEEEEECS--SSEEEEEESS-EEEEEESSTT-----------CCCEEEEECCGGGTTCEEEEEEECTTSCE
T ss_pred hcceecCCccEEEEecC--CCeEEEEcCC-cEEEEcccCC-----------CCCceeeecchhcccceEEEEEECCCCCE
Confidence 33334456777777765 3355555544 7999998763 145555555532 23556666778886
Q ss_pred EEEec-------CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEE
Q 011709 211 VLSGG-------KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283 (479)
Q Consensus 211 l~s~s-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 283 (479)
++..+ -.|.+.+|..+.... +.++||......
T Consensus 166 ~~l~GI~~~~~~v~G~mQLYS~er~~s-----------------------------------------Q~ieGhaa~F~~ 204 (365)
T 2xzh_A 166 LLLTGISAQQNRVVGAMQLYSVDRKVS-----------------------------------------QPIEGHAASFAQ 204 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTTTEE-----------------------------------------EEECCSEEEEEE
T ss_pred EEEEeEeccCCccceeEEEEeeccccc-----------------------------------------ceeeeeeeeeEE
Confidence 65433 236778888765332 455666544333
Q ss_pred EEEee--CCCcEEEEEec---CCeEEEEeCCCC---CCCc----eeeec---cCCCCeEEEEecCCCCcEEEEEeCCCcE
Q 011709 284 VTFCP--SSAQEFCSVGD---DSCLILWDARVG---TSPV----IKVEK---AHDADLHCVDWNPLDDNLILTGSADNSV 348 (479)
Q Consensus 284 l~~~~--~~~~~l~s~~~---dg~i~iwd~~~~---~~~~----~~~~~---~~~~~v~~l~~sp~~~~~l~tgs~dg~I 348 (479)
+.+.. ....+|+-+.. .+.+++-++... ..+. +..+. ....--.++..++ .-..++.-+.-|.|
T Consensus 205 ~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~i 283 (365)
T 2xzh_A 205 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYI 283 (365)
T ss_dssp ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEE
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEE
Confidence 32211 11123333322 268999998543 1111 11111 1234456788888 67788999999999
Q ss_pred EEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 349 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
++||+.+ +.++..-+--.+.|...+-+.....++ .....|.|.--.+..
T Consensus 284 hlyDleT------gt~i~~nrIS~d~iF~ta~~~~~~Gi~-~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 284 HLYDLET------GTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEEETTT------CCEEEEEECCSSCEEEEEEEGGGTEEE-EEETTCEEEEEEECT
T ss_pred EEEEccc------CcEEEEeccCCCceEEecccCCCCcEE-EEcCCCEEEEEEECc
Confidence 9999999 788877766667777666665555554 555788777666655
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.20 E-value=0.47 Score=42.80 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=54.2
Q ss_pred cEEEEEecC-----CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC-----CcEEEEecCCCCCCCC
Q 011709 292 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV 361 (479)
Q Consensus 292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d-----g~I~iwd~~~~~~~~~ 361 (479)
.+++.|+.+ ..+.+||+.+.++..+..+........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~---- 242 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET---- 242 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE----
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc----
Confidence 667777654 4588999988763222222111122233333 56777777765 468999987621
Q ss_pred CCceeeecCCCCcEEEEEEecCCCcEEEEEeCC-----CCEEEEeCCC
Q 011709 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (479)
Q Consensus 362 ~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D-----g~v~iwd~~~ 404 (479)
...+..+.........+.+ ++ .|++.|+.+ ..+.+||+.+
T Consensus 243 W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 243 WTFVAPMKHRRSALGITVH--QG-RIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTT
T ss_pred EEECCCCCCCccceEEEEE--CC-EEEEEcCcCCCcccceEEEEcCCC
Confidence 2222222211111222222 33 477788754 3467777765
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.15 E-value=0.4 Score=40.60 Aligned_cols=63 Identities=10% Similarity=0.075 Sum_probs=39.7
Q ss_pred eEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCC-c----eeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEE
Q 011709 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-V----IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR 349 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~----~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~ 349 (479)
-.++.|.|+| .+.++ .||.|.-++-.+.... . ...-..-=..+..|.|.| ++.+.+.. |+.++
T Consensus 90 F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 90 FQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFY 157 (236)
T ss_dssp CSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEE
T ss_pred ceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEE
Confidence 4688999998 44444 6699988876443211 0 011111125689999999 88877776 77743
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.09 E-value=1.8 Score=38.95 Aligned_cols=103 Identities=7% Similarity=0.058 Sum_probs=54.3
Q ss_pred cEEEEEecC--------CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC-C-----CcEEEEecCCCC
Q 011709 292 QEFCSVGDD--------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-D-----NSVRMFDRRNLT 357 (479)
Q Consensus 292 ~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~-d-----g~I~iwd~~~~~ 357 (479)
.+++.|+.+ ..+.+||..+.++..+..+........++.+ ++.+++.|+. + ..+.+||+.+..
T Consensus 100 ~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 566666632 4588999988763222222111122223332 5677777776 2 368899987621
Q ss_pred CCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCC-----CEEEEeCCC
Q 011709 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEK 404 (479)
Q Consensus 358 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg-----~v~iwd~~~ 404 (479)
...+..+.........+.+ ++ .|++.|+.++ .+.+||+.+
T Consensus 177 ----W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 177 ----WKELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp ----EEECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTT
T ss_pred ----EEECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCC
Confidence 1222222211111222222 33 4777887654 478888876
No 325
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.85 E-value=2.2 Score=38.59 Aligned_cols=196 Identities=13% Similarity=0.138 Sum_probs=113.4
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCC
Q 011709 149 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH 228 (479)
Q Consensus 149 ~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~ 228 (479)
+| ...+||--. ..++.|+|+++. ..+....-.. .|.-=.|-.... |+-.+ +..|.-|++...
T Consensus 75 nP-~~~ViALra-g~~LQiFnletK------------~klks~~~~e--~VvfWkWis~~~-L~lVT-~taVyHWs~~~~ 136 (365)
T 2xzh_A 75 NP-ASKVIALKA-GKTLQIFNIEMK------------SKMKAHTMTD--DVTFWKWISLNT-VALVT-DNAVYHWSMEGE 136 (365)
T ss_dssp CS-SSSEEEEEE-TTEEEEEETTTT------------EEEEEEECSS--CEEEEEECSSSE-EEEEE-SSEEEEEESSTT
T ss_pred CC-CccEEEEec-CCeEEEechHHh------------hhhcceecCC--ccEEEEecCCCe-EEEEc-CCcEEEEcccCC
Confidence 56 566777766 568999999987 2222233222 254556654443 33333 468999999642
Q ss_pred ccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC----CCceEEEEEeeCCCcEEEEEe------
Q 011709 229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH----EDTVEDVTFCPSSAQEFCSVG------ 298 (479)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~------ 298 (479)
.. |.+.+..| ...|..-..+++...++++|-
T Consensus 137 s~---------------------------------------P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 177 (365)
T 2xzh_A 137 SQ---------------------------------------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 177 (365)
T ss_dssp CC---------------------------------------CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred CC---------------------------------------CceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCc
Confidence 11 11222222 234555566666644444442
Q ss_pred cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCC--CCcEEEEEeC---CCcEEEEecCCC-CCCC--CCCceeeec-
Q 011709 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSA---DNSVRMFDRRNL-TSNG--VGSPINKFE- 369 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~l~tgs~---dg~I~iwd~~~~-~~~~--~~~~~~~~~- 369 (479)
-.|.+.+|....+. -+.+.+|.+....+.+... ...+|+.+.. .+.++|.++... .... ..+.+..+-
T Consensus 178 v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fp 254 (365)
T 2xzh_A 178 VVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 254 (365)
T ss_dssp EEEEEEEEETTTTE---EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCC
T ss_pred cceeEEEEeecccc---cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCC
Confidence 24788999987655 5566788776665555321 1223443333 268999999654 1110 011111111
Q ss_pred --CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 370 --GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 370 --~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
+..+-..++..++... ++..-+.-|.|.+||++++
T Consensus 255 pea~~DFPVamqvs~kyg-viyviTK~G~ihlyDleTg 291 (365)
T 2xzh_A 255 PEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETG 291 (365)
T ss_dssp TTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTC
T ss_pred ccccCCceEEEEecccCC-EEEEEeCCcEEEEEEcccC
Confidence 2244566888888877 5668888999999999995
No 326
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.63 E-value=3 Score=39.27 Aligned_cols=207 Identities=14% Similarity=0.197 Sum_probs=126.9
Q ss_pred EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCC---CceeeeeecCCCCcE
Q 011709 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD---NAEFALAMCPTEPYV 211 (479)
Q Consensus 135 ~~~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~---~~v~~l~~s~~~~~l 211 (479)
+....+.+|.-=+|.. .+.|+--+.. .|+-|++... ..+...+.-|.. .-|....-+++.+++
T Consensus 100 ks~~~~e~VvfWkWis--~~~l~lVT~t-aVyHWsi~~~-----------s~P~kvFdR~~~L~~~QIInY~~d~~~kW~ 165 (494)
T 1bpo_A 100 KAHTMTDDVTFWKWIS--LNTVALVTDN-AVYHWSMEGE-----------SQPVKMFDRHSSLAGCQIINYRTDAKQKWL 165 (494)
T ss_dssp EEEECSSCCCEEEEEE--TTEEEEECSS-EEEEEESSSS-----------CCCEEEEECCGGGTTCEEEEEEECTTSSEE
T ss_pred cceecCCCceEEEecC--CCeEEEEcCC-eeEEecccCC-----------CCchhheecchhcccceEEEEEECCCCCeE
Confidence 3333445676667765 3356655544 7999999753 145555655532 235566677888876
Q ss_pred EEec-------CCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEE
Q 011709 212 LSGG-------KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV 284 (479)
Q Consensus 212 ~s~s-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 284 (479)
+..+ -.|.+.+|..+.... +.++||......+
T Consensus 166 ~l~GI~~~~~~v~G~mQLYS~er~~s-----------------------------------------Q~ieGhaa~F~~~ 204 (494)
T 1bpo_A 166 LLTGISAQQNRVVGAMQLYSVDRKVS-----------------------------------------QPIEGHAASFAQF 204 (494)
T ss_dssp EEEEEEEETTEEEEEEEEEESTTCCE-----------------------------------------EEECCSEEEEEEE
T ss_pred EEEeecccCCcccceEEEeecccccc-----------------------------------------chheeeeeeeEEE
Confidence 6433 246778888765332 5566665544444
Q ss_pred EEeeC--CCcEEEEEec---CCeEEEEeCCCC---CCCc----eeeec---cCCCCeEEEEecCCCCcEEEEEeCCCcEE
Q 011709 285 TFCPS--SAQEFCSVGD---DSCLILWDARVG---TSPV----IKVEK---AHDADLHCVDWNPLDDNLILTGSADNSVR 349 (479)
Q Consensus 285 ~~~~~--~~~~l~s~~~---dg~i~iwd~~~~---~~~~----~~~~~---~~~~~v~~l~~sp~~~~~l~tgs~dg~I~ 349 (479)
..... ...+|+-+.. .+.++|-++... ..+. +..+. ....--.++..++ .-..++.-+.-|.|+
T Consensus 205 ~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~ 283 (494)
T 1bpo_A 205 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIH 283 (494)
T ss_dssp ECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEE
T ss_pred ecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEE
Confidence 33211 1123333333 378999998654 1111 11111 2234456788888 777888999999999
Q ss_pred EEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 350 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
+||+.+ +.++..-+--.+.|...+-+.....++ .....|.|.--.+..
T Consensus 284 lyDleT------gt~i~~nrIs~~~iF~t~~~~~~~Gi~-~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 284 LYDLET------GTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEETTT------CCEEEEEECCSSCEEEEEEETTTTEEE-EEETTCEEEEEEECT
T ss_pred EEeccc------ceeeeeecccCCceEEecccCCCCcEE-EEccCceEEEEEEcc
Confidence 999999 788877766667777766666656555 555788877766665
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.62 E-value=3.1 Score=45.40 Aligned_cols=235 Identities=13% Similarity=0.122 Sum_probs=124.2
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCC
Q 011709 149 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH 228 (479)
Q Consensus 149 ~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~ 228 (479)
+| ...+||--+ ..++.|+|+++.... ....-.. .|.--.|-.... |+-.+ +..|.-|++.+.
T Consensus 74 nP-~~~iiALra-g~~lQiFnl~~k~kl------------ks~~~~e--~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~ 135 (1630)
T 1xi4_A 74 NP-ASKVIALKA-GKTLQIFNIEMKSKM------------KAHTMTD--DVTFWKWISLNT-VALVT-DNAVYHWSMEGE 135 (1630)
T ss_pred CC-CcceEEEec-CCeEEEeehHHhhhh------------cccccCC--CceEEEecCCCe-eEEEc-CCeEEEeccCCC
Confidence 45 555676665 569999999887322 1222222 244455654433 33333 467999999642
Q ss_pred ccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC----CCceEEEEEeeCCCcEEEEEe------
Q 011709 229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH----EDTVEDVTFCPSSAQEFCSVG------ 298 (479)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~------ 298 (479)
.. |...+..| ...|..-..+++...++++|-
T Consensus 136 s~---------------------------------------P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~ 176 (1630)
T 1xi4_A 136 SQ---------------------------------------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 176 (1630)
T ss_pred Cc---------------------------------------cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCc
Confidence 11 11122212 234555566666644444432
Q ss_pred cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEec--CCCCcEEEEEeC---CCcEEEEecCCC-CCCC--CCCceeeec-
Q 011709 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN--PLDDNLILTGSA---DNSVRMFDRRNL-TSNG--VGSPINKFE- 369 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s--p~~~~~l~tgs~---dg~I~iwd~~~~-~~~~--~~~~~~~~~- 369 (479)
-.|.+.+|....+. ...+.||.+....+... +....++..+.. .+.++|.++... ...+ ..+.+..+.
T Consensus 177 v~G~mQLyS~er~~---sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~ 253 (1630)
T 1xi4_A 177 VVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 253 (1630)
T ss_pred ccceeeeeeccccc---chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCC
Confidence 35889999988765 34455776665555443 211233333222 278999999653 1110 011111111
Q ss_pred --CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCC-ceeEEEecCCCeeee
Q 011709 370 --GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSP-SSSIKFVLRESCLVD 446 (479)
Q Consensus 370 --~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~-~~~~~~sp~~~~l~~ 446 (479)
.-.+-..++..++... ++...+.-|.|.++|+.++...... . -....+|....+.. ---++.+..|+++..
T Consensus 254 ~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~~~-r----is~~~iF~~~~~~~~~g~~~vnr~G~vl~v 327 (1630)
T 1xi4_A 254 PEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMN-R----ISGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (1630)
T ss_pred cccccCcceEEEeccccC-EEEEEecCceEEEEecccchhhhhc-c----ccCCceEEeccCCCCCceEEEcCCceEEEE
Confidence 1233455788888777 4557788999999999995333222 1 22344665555443 223444555555544
Q ss_pred cCC
Q 011709 447 NNH 449 (479)
Q Consensus 447 ~~~ 449 (479)
+-+
T Consensus 328 ~v~ 330 (1630)
T 1xi4_A 328 CVE 330 (1630)
T ss_pred EEc
Confidence 433
No 328
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.45 E-value=3 Score=38.42 Aligned_cols=72 Identities=11% Similarity=0.049 Sum_probs=40.7
Q ss_pred ceeeecCCCCcEEEEEEec-------CCCcEEEEEeCCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEE
Q 011709 364 PINKFEGHSAAVLCVQWSP-------DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIK 436 (479)
Q Consensus 364 ~~~~~~~h~~~v~~l~~~p-------~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~ 436 (479)
++..+..| ..+..++|.. ++. +|++.-..+.|...++.. +.... ...+.......+.+++
T Consensus 263 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~-l~v~~~~~~~v~~~~~~~-~~~~~----------~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 263 PVFYWKDS-PAVSGMAFYNSDKFPQWQQK-LFIGALKDKDVIVMSVNG-DKVTE----------DGRILTDRGQRIRDVR 329 (353)
T ss_dssp CSEEESSC-CCEEEEEEECCSSSGGGTTE-EEEEETTTTEEEEEEEET-TEEEE----------EEEESGGGCCCEEEEE
T ss_pred CeEEeCCC-cCcceeEEECCccCcccCCc-EEEEEccCCEEEEEEeCC-CeEee----------eEEcccCCCCceeEEE
Confidence 33444433 4677888874 344 565655677777777764 21111 0111111123578999
Q ss_pred EecCCCeeeecC
Q 011709 437 FVLRESCLVDNN 448 (479)
Q Consensus 437 ~sp~~~~l~~~~ 448 (479)
+.|||...++..
T Consensus 330 ~~pdG~lyv~td 341 (353)
T 2g8s_A 330 TGPDGYLYVLTD 341 (353)
T ss_dssp ECTTSCEEEEEC
T ss_pred ECCCCcEEEEEe
Confidence 999998777644
No 329
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.07 E-value=5 Score=43.51 Aligned_cols=203 Identities=6% Similarity=-0.002 Sum_probs=105.2
Q ss_pred CceeEEEec---CCCCcEEEEEe----------CCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCC
Q 011709 141 GEVNRIREL---PQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT 207 (479)
Q Consensus 141 ~~V~~l~~~---p~~~~~lat~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~ 207 (479)
..+.+++.. .+...+|+.|+ ..|.|++|++... +..........++|++++-- +
T Consensus 829 E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~------------kL~lv~~~~v~g~v~al~~~-~ 895 (1158)
T 3ei3_A 829 EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG------------KLQTVAEKEVKGAVYSMVEF-N 895 (1158)
T ss_dssp EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT------------EEEEEEEEEESSCEEEEEEE-T
T ss_pred cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC------------EEEEEEEEEcCCcCEEEeee-C
Confidence 345555433 23356888887 3478999998732 22222222223457777643 3
Q ss_pred CCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEe
Q 011709 208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC 287 (479)
Q Consensus 208 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 287 (479)
| +|++|- ..+|++|++....... .....+. .|..+...
T Consensus 896 g-~Lla~i-g~~l~vy~l~~~~~L~---------------------------------------~~~~~~~-~i~~~~l~ 933 (1158)
T 3ei3_A 896 G-KLLASI-NSTVRLYEWTTEKELR---------------------------------------TECNHYN-NIMALYLK 933 (1158)
T ss_dssp T-EEEEEE-TTEEEEEEECTTSCEE---------------------------------------EEEEECC-CSCEEEEE
T ss_pred C-EEEEEc-CCEEEEEECCCCceEE---------------------------------------EEeeccc-cEEEEEEe
Confidence 4 455443 5789999996432100 0000011 12222222
Q ss_pred eCCCcEEEEEecCCeEEEEeCCCCCCCceee-eccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCC-CC-c
Q 011709 288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV-GS-P 364 (479)
Q Consensus 288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~-~~-~ 364 (479)
..+ ++++.|..-..|.+...+.....+... -..+...++++.+-. ...++.+..+|.|.+........... +. .
T Consensus 934 ~~~-~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L 1010 (1158)
T 3ei3_A 934 TKG-DFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDSAATTDEERQHL 1010 (1158)
T ss_dssp EET-TEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECTTCCSTTGGGBE
T ss_pred ccC-CEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEc--cCcEEEEcCCCcEEEEecCCCCCCcccccee
Confidence 234 567777766666665443322112221 124567788888874 45788899999999987765221111 11 1
Q ss_pred eeeecCC-CCcEEEEE---EecCC--------CcEEEEEeCCCCEEEEe
Q 011709 365 INKFEGH-SAAVLCVQ---WSPDK--------SSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 365 ~~~~~~h-~~~v~~l~---~~p~~--------~~llas~s~Dg~v~iwd 401 (479)
...-.-| ...|+++. +.+.+ ...++-++.+|.|-+.-
T Consensus 1011 ~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1011 QEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp EEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred eeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 1111222 34566665 23322 22345677788887654
No 330
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.07 E-value=3.5 Score=37.77 Aligned_cols=253 Identities=10% Similarity=0.124 Sum_probs=126.8
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEE----eccCCCceeeeeecCC---CCcEE
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL----TGHQDNAEFALAMCPT---EPYVL 212 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~h~~~~v~~l~~s~~---~~~l~ 212 (479)
-.....|+|.| ++.++++-...|.|++++...+.. ..+..+ .... .....|+++|+ +..|.
T Consensus 31 L~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~----------~~v~~~~~v~~~g~-~GllGia~~Pdf~~~g~lY 98 (347)
T 3das_A 31 LNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRK----------TELGEVPGVSPSGE-GGLLGIALSPDYASDHMVY 98 (347)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE----------EEEEECTTCCCBTT-BSEEEEEECTTHHHHCEEE
T ss_pred CCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcE----------eeecccCceeecCC-CCceeeEeccccccCCEEE
Confidence 34578999999 778888876689999998654421 011111 1112 23679999996 34444
Q ss_pred Ee---cCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCc-eeec-CCCCceEEEEEe
Q 011709 213 SG---GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR-GIYN-GHEDTVEDVTFC 287 (479)
Q Consensus 213 s~---s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~h~~~v~~l~~~ 287 (479)
.. ..++.|.-|.+........ .. ...+.+ ..+. +....-..|+|.
T Consensus 99 v~yt~~~~~~v~R~~~~~~~~~~~-~~-----------------------------~~~~~i~~~~p~~~~H~g~~l~fg 148 (347)
T 3das_A 99 AYFTSASDNRIVRMLYDEKKPSGE-QL-----------------------------GAPDTVFRGIPKGVIHNGGRIAFG 148 (347)
T ss_dssp EEEECSSSEEEEEEEBCTTSCTTC-CB-----------------------------CCCEEEEEEECCCSSCCCCCEEEC
T ss_pred EEEecCCCCEEEEEEeCCCCcccc-cC-----------------------------CCcEEEEEcCCCCCCccCccccCC
Confidence 32 2344555555543110000 00 000000 0010 111234678999
Q ss_pred eCCCcEEEEEec-------------CCeEEEEeCCCCC---CC---ceeeeccCCCCeEEEEecCCCCcEEEEEeC-CCc
Q 011709 288 PSSAQEFCSVGD-------------DSCLILWDARVGT---SP---VIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNS 347 (479)
Q Consensus 288 ~~~~~~l~s~~~-------------dg~i~iwd~~~~~---~~---~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg~ 347 (479)
|+| .++++.++ .|.|.-.+....- .+ ......+|. ....++|+| ++.++++=.. |+-
T Consensus 149 pDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp-~G~L~~~d~g~~~~ 225 (347)
T 3das_A 149 PDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDD-KQRLFASEFGQDTW 225 (347)
T ss_dssp TTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECT-TCCEEEEECCSSSC
T ss_pred CCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECC-CCCEEEEecCCCCC
Confidence 999 56666442 3555555554220 00 011122443 346799999 7776655422 332
Q ss_pred EEEEecCCCCC------------CCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCCCccccCCCCC
Q 011709 348 VRMFDRRNLTS------------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 415 (479)
Q Consensus 348 I~iwd~~~~~~------------~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~~~~~~~~~~~ 415 (479)
=.|--+..... .....++..+..+......++|.. +. +|+..-..+.|....+...+. .
T Consensus 226 deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~-~------ 296 (347)
T 3das_A 226 DELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAA-A------ 296 (347)
T ss_dssp EEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-TE-EEEEESTTCSEEEEEEETTEE-S------
T ss_pred ceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-Cc-eeeccccCCEEEEEEecCCce-e------
Confidence 22222221110 011234555554434677888874 44 565555566666666654211 1
Q ss_pred CCCCCeeEEEeCCCCCceeEEEecCCCeeeecCC
Q 011709 416 TNYPAGLFFQHAGHSPSSSIKFVLRESCLVDNNH 449 (479)
Q Consensus 416 ~~~~~~l~~~~~gh~~~~~~~~sp~~~~l~~~~~ 449 (479)
..++. |.......+.+++..|||.++++.++
T Consensus 297 --~~~e~-~l~~~~gR~~dv~~~pDG~lyv~td~ 327 (347)
T 3das_A 297 --ADPQA-FLEGEYGRLRTVAPAGGDKLWLVTSN 327 (347)
T ss_dssp --SCCEE-ESTTTSSCEEEEEEEETTEEEEEECT
T ss_pred --cceEE-eecCCCCCccEEEECCCCcEEEEEcC
Confidence 01121 21222345899999999998887664
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.01 E-value=1.3 Score=40.01 Aligned_cols=61 Identities=8% Similarity=0.143 Sum_probs=35.9
Q ss_pred cEEEEEec-C-----CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC-----cEEEEecCC
Q 011709 292 QEFCSVGD-D-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-----SVRMFDRRN 355 (479)
Q Consensus 292 ~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg-----~I~iwd~~~ 355 (479)
.+++.|+. + ..+.+||..+.++..+..+........++.+ ++.+++.|+.++ .+.+||+.+
T Consensus 150 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 150 LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCC
Confidence 56777765 2 4688999988764222222111122223333 567777777654 588899876
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.93 E-value=0.57 Score=39.68 Aligned_cols=107 Identities=7% Similarity=0.055 Sum_probs=62.0
Q ss_pred ceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCce----eee-ccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecC
Q 011709 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI----KVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR 354 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~-~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~ 354 (479)
.+.+++|+|++ .+.+. .+|.+.-.+..+...... ..+ ..--....++.|.| ++.+.++ .||.|+-++--
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 56799999987 44444 778887777655331110 011 00011247899999 8877777 56988877653
Q ss_pred CCCCCCCCCceee--e--cCCCCcEEEEEEecCCCcEEEEEeCCCCEE
Q 011709 355 NLTSNGVGSPINK--F--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN 398 (479)
Q Consensus 355 ~~~~~~~~~~~~~--~--~~h~~~v~~l~~~p~~~~llas~s~Dg~v~ 398 (479)
+... ..-+.. . ..-=..+..|.|.|+|. |.|.. |+.+.
T Consensus 116 ~~~~---~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~ly 157 (236)
T 1tl2_A 116 QSDT---DNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFY 157 (236)
T ss_dssp CSTT---CCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEE
T ss_pred cCCC---CceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEE
Confidence 3110 111111 1 11114679999999997 56444 77743
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.53 E-value=1.9 Score=38.88 Aligned_cols=63 Identities=14% Similarity=0.316 Sum_probs=35.4
Q ss_pred CCCcEEEEEec------CCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC-----cEEEEecCC
Q 011709 289 SSAQEFCSVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-----SVRMFDRRN 355 (479)
Q Consensus 289 ~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg-----~I~iwd~~~ 355 (479)
++ .+++.|+. -..+.+||+.+.++..+..+........++.+ ++.+++.|+.++ .+.+||+.+
T Consensus 158 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 158 NG-MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp TT-EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred CC-EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEEECCC
Confidence 44 56666654 23589999988764322222111122223333 567777776543 577899876
No 334
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.49 E-value=5.1 Score=37.76 Aligned_cols=196 Identities=13% Similarity=0.143 Sum_probs=115.2
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcEEEEecCCC
Q 011709 149 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH 228 (479)
Q Consensus 149 ~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~ 228 (479)
+| ...+||--. ..++.|+|+++. ..+....-.. .|.--.|-.+. .|+-.+ +..|.-|++...
T Consensus 74 nP-~~~iiALra-g~~lQiFnle~K------------~klks~~~~e--~VvfWkWis~~-~l~lVT-~taVyHWsi~~~ 135 (494)
T 1bpo_A 74 NP-ASKVIALKA-GKTLQIFNIEMK------------SKMKAHTMTD--DVTFWKWISLN-TVALVT-DNAVYHWSMEGE 135 (494)
T ss_dssp CS-SSSCEEEEE-TTEEEEEETTTT------------EEEEEEECSS--CCCEEEEEETT-EEEEEC-SSEEEEEESSSS
T ss_pred CC-CCcEEEEec-CCeEEEEchHHh------------hhhcceecCC--CceEEEecCCC-eEEEEc-CCeeEEecccCC
Confidence 55 556777665 569999999987 2222222222 24445555443 344333 568999999642
Q ss_pred ccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCC----CCceEEEEEeeCCCcEEEEEe------
Q 011709 229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH----EDTVEDVTFCPSSAQEFCSVG------ 298 (479)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~------ 298 (479)
.. |...+..| ...|..-..+++...++++|-
T Consensus 136 s~---------------------------------------P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 176 (494)
T 1bpo_A 136 SQ---------------------------------------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 176 (494)
T ss_dssp CC---------------------------------------CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred CC---------------------------------------chhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence 11 11222222 234555666666644444432
Q ss_pred cCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCC--CCcEEEEEeCC---CcEEEEecCCCCCCCC---CCceeee--
Q 011709 299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSAD---NSVRMFDRRNLTSNGV---GSPINKF-- 368 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~l~tgs~d---g~I~iwd~~~~~~~~~---~~~~~~~-- 368 (479)
-.|.+.+|....+. -..+.+|.+....+.+... ...++..+... +.++|.++........ .+.+..+
T Consensus 177 v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fp 253 (494)
T 1bpo_A 177 VVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 253 (494)
T ss_dssp EEEEEEEEESTTCC---EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred ccceEEEeeccccc---cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCC
Confidence 24788999988765 5567788877776666431 12345544443 7999999965411100 1111111
Q ss_pred -cCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCCC
Q 011709 369 -EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405 (479)
Q Consensus 369 -~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~~ 405 (479)
..-.+-..++..++... ++.....-|.|.+||+.++
T Consensus 254 pe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTg 290 (494)
T 1bpo_A 254 PEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETG 290 (494)
T ss_dssp TTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTC
T ss_pred cccccCceeEEEecccCC-EEEEEecCceEEEEecccc
Confidence 12234566889998887 5668888999999999995
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.46 E-value=4.2 Score=36.59 Aligned_cols=103 Identities=8% Similarity=0.120 Sum_probs=52.2
Q ss_pred cEEEEEecC-------CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCC------CcEEEEecCCCCC
Q 011709 292 QEFCSVGDD-------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRMFDRRNLTS 358 (479)
Q Consensus 292 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~d------g~I~iwd~~~~~~ 358 (479)
.+++.|+.+ ..+.+||..+.++..+..+........++.. ++.+++.|+.+ ..+.+||+.+..
T Consensus 111 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~- 186 (318)
T 2woz_A 111 KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH---NGMIYCLGGKTDDKKCTNRVFIYNPKKGD- 186 (318)
T ss_dssp EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE---TTEEEEECCEESSSCBCCCEEEEETTTTE-
T ss_pred EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE---CCEEEEEcCCCCCCCccceEEEEcCCCCE-
Confidence 567777653 3588899988764222211111111122222 56777777642 358999987621
Q ss_pred CCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCC-----CCEEEEeCCC
Q 011709 359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK 404 (479)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~D-----g~v~iwd~~~ 404 (479)
...+..+.........+.+ ++ .|++.|+.+ ..+.+||+.+
T Consensus 187 ---W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 187 ---WKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp ---EEEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTT
T ss_pred ---EEECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCC
Confidence 1222222211111122222 33 477777754 2467888876
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.03 E-value=5.3 Score=36.56 Aligned_cols=51 Identities=14% Similarity=0.019 Sum_probs=27.7
Q ss_pred CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC------CCcEEEEec
Q 011709 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDR 353 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~------dg~I~iwd~ 353 (479)
..+.+||..+.++..+..+......-.+++.. ++.+++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence 47899999987743333222111110223332 4567777664 245777876
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.47 E-value=5.3 Score=43.69 Aligned_cols=204 Identities=12% Similarity=0.185 Sum_probs=117.4
Q ss_pred eeeecCCCCcEEEecCCCcEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCc
Q 011709 201 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT 280 (479)
Q Consensus 201 ~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 280 (479)
+.-.+|..+.++--+ ..++.++|+.+..... ... ....
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klk----------------------------------------s~~-~~e~ 107 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMK----------------------------------------AHT-MTDD 107 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhc----------------------------------------ccc-cCCC
Confidence 344567666665544 6899999997543211 111 1234
Q ss_pred eEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccC----CCCeEEEEecCCCCcEEEEEe-------CCCcEE
Q 011709 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH----DADLHCVDWNPLDDNLILTGS-------ADNSVR 349 (479)
Q Consensus 281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~l~~sp~~~~~l~tgs-------~dg~I~ 349 (479)
|.--.|-... .++-.+ +..|..|++..... .++.+..| ...|..-..++ +..+++..| -.|.+.
T Consensus 108 VvfWkWis~~--~l~lVT-~~aVyHW~~~~~s~-P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQ 182 (1630)
T 1xi4_A 108 VTFWKWISLN--TVALVT-DNAVYHWSMEGESQ-PVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQ 182 (1630)
T ss_pred ceEEEecCCC--eeEEEc-CCeEEEeccCCCCc-cHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceee
Confidence 6555665443 455444 35799999976443 34444444 45566666777 666655332 358899
Q ss_pred EEecCCCCCCCCCCceeeecCCCCcEEEEEEe--cCCCcEEEEEeC---CCCEEEEeCCCCCccccCCCCCCCCCCeeEE
Q 011709 350 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS--PDKSSVFGSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424 (479)
Q Consensus 350 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--p~~~~llas~s~---Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 424 (479)
+|.... +.-+.+.||.+....+... +....+|+.+.. .+.++|-++........ ........+.|
T Consensus 183 LyS~er-------~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~---~f~kk~~~~~~ 252 (1630)
T 1xi4_A 183 LYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ---PFPKKAVDVFF 252 (1630)
T ss_pred eeeccc-------ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC---CCccccccccC
Confidence 999886 4555677787665555443 222235544433 37899999865311111 11112233444
Q ss_pred EeCCCCC-ceeEEEecCCCeeeecCCCccccceeEEEEeeccc
Q 011709 425 QHAGHSP-SSSIKFVLRESCLVDNNHGLSYANKKIKIYCHLEA 466 (479)
Q Consensus 425 ~~~gh~~-~~~~~~sp~~~~l~~~~~~~~~~d~~i~i~~~~~~ 466 (479)
......+ ..++..++.-..+..-.. -|-|.+|+..+-
T Consensus 253 ~~~~~~Dfpv~~~vs~k~g~iy~itk-----~G~~~~~d~~t~ 290 (1630)
T 1xi4_A 253 PPEAQNDFPVAMQISEKHDVVFLITK-----YGYIHLYDLETG 290 (1630)
T ss_pred CcccccCcceEEEeccccCEEEEEec-----CceEEEEecccc
Confidence 4443334 678888888777666666 678899876654
No 338
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.47 E-value=7.8 Score=37.13 Aligned_cols=157 Identities=7% Similarity=0.086 Sum_probs=80.2
Q ss_pred ceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCC--CCceee---ec-----cCCCCeEEEEecCCC----CcEEEEEeC-
Q 011709 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT--SPVIKV---EK-----AHDADLHCVDWNPLD----DNLILTGSA- 344 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~---~~-----~~~~~v~~l~~sp~~----~~~l~tgs~- 344 (479)
.-..|+|.|++...++.+...|.|++++..... .++... +. ........|+|+| + +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P-~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHP-NYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECT-THHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCC-CCcCCCEEEEEEeCC
Confidence 457899999984234555678999999754321 111111 11 1246788999999 4 333333322
Q ss_pred -C----------CcEEEEecCCCCCC----CCCCceeeec--CCCCcEEEEEEecCCCcEEEEEeCCCC-----------
Q 011709 345 -D----------NSVRMFDRRNLTSN----GVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGL----------- 396 (479)
Q Consensus 345 -d----------g~I~iwd~~~~~~~----~~~~~~~~~~--~h~~~v~~l~~~p~~~~llas~s~Dg~----------- 396 (479)
+ ..|.-|.+...... ...+.+..+. .....-..|+|.||+. |+++.+..+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~~~~~~~~~~~q~~ 172 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDGMITLDDMEEMDGL 172 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCTTCCHHHHHHCTTC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCCCCCCCccccccCc
Confidence 1 13434555421100 0012233322 1223467899999997 6666664332
Q ss_pred ----EEEEeCCCCCc------cccCCCCCCC---CCCeeEEEeCCCCCceeEEEecC
Q 011709 397 ----LNIWDYEKVGK------KVEQGPRTTN---YPAGLFFQHAGHSPSSSIKFVLR 440 (479)
Q Consensus 397 ----v~iwd~~~~~~------~~~~~~~~~~---~~~~l~~~~~gh~~~~~~~~sp~ 440 (479)
=+|+.+...+. .+........ ..++ + -..||+....++|.|.
T Consensus 173 ~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~e-I-~a~G~RNp~gla~dp~ 227 (463)
T 2wg3_C 173 SDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPE-V-FAHGLHDPGRCAVDRH 227 (463)
T ss_dssp CSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTT-E-EEECCSSCCBEEEESS
T ss_pred CCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCccc-E-EEECCCCcceEEECCC
Confidence 13444433221 0100000000 1122 3 3568999999999997
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.37 E-value=3.2 Score=42.29 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=39.8
Q ss_pred CCCcEEEEEecCC--eEEEEeCCCCCCCceee---eccCCCCeEEEEecCCCCcEEEEEeC--C-----CcEEEEecCC
Q 011709 289 SSAQEFCSVGDDS--CLILWDARVGTSPVIKV---EKAHDADLHCVDWNPLDDNLILTGSA--D-----NSVRMFDRRN 355 (479)
Q Consensus 289 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~---~~~~~~~v~~l~~sp~~~~~l~tgs~--d-----g~I~iwd~~~ 355 (479)
++ .+++.|+.++ .+.+||..+..+..+.. .........++.+...++.+++.|+. + ..+.+||+.+
T Consensus 500 ~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 500 DG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp TS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred CC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence 44 6777777654 69999999877432221 11112222345556523677777776 2 3588999887
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=91.61 E-value=6 Score=35.45 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=58.1
Q ss_pred EEeeCCCcEEEEEecC-------------CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEe----CCCc
Q 011709 285 TFCPSSAQEFCSVGDD-------------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS----ADNS 347 (479)
Q Consensus 285 ~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs----~dg~ 347 (479)
-+++++..+..+...+ ..|+..++..... . .+.. .. +..|++ ++..|+-.. ....
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~--~-~l~~--~~--~~~~s~-~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS--T-VLDP--DP--CIYASL-IGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC--E-EEEC--SC--EEEEEE-ETTEEEEEEESSSSCEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc--e-Eeec--CC--ccEEEE-eCCEEEEEeecCCCCce
Confidence 4577886555555443 4678888877652 2 2211 11 235677 666666554 3345
Q ss_pred EEEEecCCCCCCCCCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 348 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 348 I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
|+..++.. .....+..+.. .+|+++++.|+.+......|.+-++..
T Consensus 131 Iy~~~~dG-------s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 131 LYRIRIDG-------EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp EEEEETTS-------CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred EEEEECCC-------CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 66666653 33344443332 456788888776655467787777765
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.37 E-value=9.3 Score=38.87 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=60.7
Q ss_pred CCCcEEEEEecC------CeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC--cEEEEecCCCCCCC
Q 011709 289 SSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--SVRMFDRRNLTSNG 360 (479)
Q Consensus 289 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg--~I~iwd~~~~~~~~ 360 (479)
++ .+++.|+.+ ..+.+||..+..+..+..+......-.++.+. ++.+++.|+.++ .+.+||..+..
T Consensus 451 ~~-~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~--~~~iyv~GG~~~~~~v~~yd~~t~~--- 524 (695)
T 2zwa_A 451 NN-QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP--DGNVLILGGVTEGPAMLLYNVTEEI--- 524 (695)
T ss_dssp TT-EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT--TSCEEEECCBCSSCSEEEEETTTTE---
T ss_pred CC-EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc--CCEEEEECCCCCCCCEEEEECCCCc---
Confidence 44 677777654 35789999887643222221112222333333 577888887755 68999987622
Q ss_pred CCCceee---ecCCCCcEEEEEEecCCCcEEEEEeC--C-----CCEEEEeCCCC
Q 011709 361 VGSPINK---FEGHSAAVLCVQWSPDKSSVFGSSAE--D-----GLLNIWDYEKV 405 (479)
Q Consensus 361 ~~~~~~~---~~~h~~~v~~l~~~p~~~~llas~s~--D-----g~v~iwd~~~~ 405 (479)
...+.. +.........+.+......+++.||. + ..+.+||+.+.
T Consensus 525 -W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 525 -FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp -EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred -eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 111211 11111222345566653457778876 2 35888998774
No 342
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.96 E-value=14 Score=34.20 Aligned_cols=72 Identities=14% Similarity=0.054 Sum_probs=37.3
Q ss_pred CceEEEEEeeCC-CcEEEEEecCCeEEEEeCCCCCCCceeeec----------------cCCCCeEEEEecCCCCcEEEE
Q 011709 279 DTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEK----------------AHDADLHCVDWNPLDDNLILT 341 (479)
Q Consensus 279 ~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------------~~~~~v~~l~~sp~~~~~l~t 341 (479)
..|.++++.|.+ +..+..+...+.|...+-.......+.... .....+.+|.++|.+...|+.
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 357788888742 345666666666555433222211111110 112457899999844455555
Q ss_pred EeCCCcEEE
Q 011709 342 GSADNSVRM 350 (479)
Q Consensus 342 gs~dg~I~i 350 (479)
+..++.|..
T Consensus 195 g~~~ggl~~ 203 (394)
T 3b7f_A 195 GMSSGGVFE 203 (394)
T ss_dssp EEETBEEEE
T ss_pred EECCCCEEE
Confidence 554444443
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=85.79 E-value=34 Score=35.03 Aligned_cols=192 Identities=13% Similarity=0.179 Sum_probs=101.7
Q ss_pred CceeEEEecCCCCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCCcE
Q 011709 141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV 220 (479)
Q Consensus 141 ~~V~~l~~~p~~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg~i 220 (479)
..|.++.... ++ .|-.|+.+| +..||..+..-.. .. .... ..|.++.. .+| .|..|+.+ -|
T Consensus 63 ~~i~~i~~d~-~g-~lWigT~~G-l~~yd~~~~~f~~---------~~---~~~~-~~i~~i~~-~~g-~lWigt~~-Gl 123 (758)
T 3ott_A 63 TRIYCGVIID-NT-YLYMGTDNG-ILVYNYRADRYEQ---------PE---TDFP-TDVRTMAL-QGD-TLWLGALN-GL 123 (758)
T ss_dssp SCEEEEEEET-TT-EEEEEETTE-EEEEETTTTEECC---------CS---CCCC-SCEEEEEE-ETT-EEEEEETT-EE
T ss_pred ceEEEEEEcC-CC-cEEEEeCCC-eEEEeCCCCEEEC---------cc---cCCC-ceEEEEEe-cCC-cEEEEcCC-cc
Confidence 4588876655 44 555666665 7889987652110 00 0011 13556654 344 45556655 57
Q ss_pred EEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEecC
Q 011709 221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300 (479)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 300 (479)
..+|..+...... .. .........|.++....++ . +..++.+
T Consensus 124 ~~~~~~~~~~~~~-~~-----------------------------------~~~~l~~~~i~~i~~d~~g-~-lWigt~~ 165 (758)
T 3ott_A 124 YTYQLQSRKLTSF-DT-----------------------------------RRNGLPNNTIYSIIRTKDN-Q-IYVGTYN 165 (758)
T ss_dssp EEEETTTCCEEEE-CH-----------------------------------HHHCCSCSCEEEEEECTTC-C-EEEEETT
T ss_pred eeEeCCCCeEEEe-cc-----------------------------------CCCCcCCCeEEEEEEcCCC-C-EEEEeCC
Confidence 7788754321100 00 0000012357787777666 4 3344554
Q ss_pred CeEEEEeCCCCCCCceeee-cc----CCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeeec-CCCCc
Q 011709 301 SCLILWDARVGTSPVIKVE-KA----HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAA 374 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~-~~----~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~ 374 (479)
| |..+|..+.. ..... .. ....|.++...+ ++..|..|+. +-+..+|... +. +..+. .....
T Consensus 166 G-l~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~~------~~-~~~~~~l~~~~ 233 (758)
T 3ott_A 166 G-LCRYIPSNGK--FEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFPST------GQ-IKQTEAFHNNS 233 (758)
T ss_dssp E-EEEEETTTTE--EEEECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EEEEEEETTT------TE-EEEEEEEEEEE
T ss_pred C-HhhCccCCCc--eEEecCCCccccccceeEEEEEEC-CCCEEEEEEC-CCCeEEcCCC------Ce-EEeccCCCCCe
Confidence 4 7778877654 11111 11 123488888876 5665555654 4577888765 22 22221 12346
Q ss_pred EEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 375 v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
|.++....++. |. .|+.+| +.++|...
T Consensus 234 i~~i~~d~~g~-lW-igT~~G-l~~~~~~~ 260 (758)
T 3ott_A 234 IKSLALDGNGD-LL-AGTDNG-LYVYHNDT 260 (758)
T ss_dssp EEEEEECTTCC-EE-EEETTE-EEEECCTT
T ss_pred EEEEEEcCCCC-EE-EEeCCc-eeEEecCC
Confidence 88888888887 33 344444 77888765
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=84.59 E-value=16 Score=33.26 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=26.9
Q ss_pred eEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCC------cEEEEecCC
Q 011709 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMFDRRN 355 (479)
Q Consensus 302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg------~I~iwd~~~ 355 (479)
.+.+||+.+.++..+..+........++.+ ++.+++.|+.++ .|.+++++.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~v~~l~~~~ 342 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETAGGKAVTDSVLITVKD 342 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECGGGCEEEEEEEEEC-C
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCCCCCEeeeEEEEEEcC
Confidence 578999998875444333222222233333 567888888653 355567776
No 345
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.40 E-value=10 Score=36.32 Aligned_cols=118 Identities=9% Similarity=0.114 Sum_probs=64.6
Q ss_pred CCeEEEEecCCCCc-EEEEEeCCCcEEEEecCCCCCCCCCCceeeec---------CCCCcEEEEEEecC---CCcEEEE
Q 011709 324 ADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFE---------GHSAAVLCVQWSPD---KSSVFGS 390 (479)
Q Consensus 324 ~~v~~l~~sp~~~~-~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~~---------~h~~~v~~l~~~p~---~~~llas 390 (479)
..-..|+|.| ++. .|+.+...|.|++++...... ..++..+. ........|+|+|+ +.+++++
T Consensus 14 ~~P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~---~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 14 RQPVGALHSG-DGSQRLFILEKEGYVKILTPEGEIF---KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp SSEEEEECCS-SSSCCEEEEETTTEEEEECTTSCBC---SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEECC-CCCeEEEEEeCCceEEEEeCCCCee---eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 3457899999 774 445556789999997542100 11222221 12457889999997 3446655
Q ss_pred EeCCC------------CEEEEeCCCCCccccCCCCCCCCCCeeEEEe---CCCCCceeEEEecCCCeeeecCCC
Q 011709 391 SAEDG------------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH---AGHSPSSSIKFVLRESCLVDNNHG 450 (479)
Q Consensus 391 ~s~Dg------------~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~---~gh~~~~~~~~sp~~~~l~~~~~~ 450 (479)
-+.+. .|.-|.+....... .+....+.++.. .++.....++|.|||.+.++.|+.
T Consensus 90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~-----~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 90 YTTNQERWAIGPHDHILRVVEYTVSRKNPHQ-----VDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp EEECCCSSCSSSSCEEEEEEEEEBCTTCTTS-----BCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred EeCCCCCcccCCcccceEEEEEEEcCCCCCc-----cCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 44321 33335554311000 000112333332 223336899999999888877764
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=83.32 E-value=26 Score=31.79 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=35.2
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCceeeeccCC--CC-----eEEEEec---C-CCCcEEEEEeCCCcEEEEe
Q 011709 292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHD--AD-----LHCVDWN---P-LDDNLILTGSADNSVRMFD 352 (479)
Q Consensus 292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~-----v~~l~~s---p-~~~~~l~tgs~dg~I~iwd 352 (479)
..+++++.+|.+...|+++++ .+..+.... .. ..|.... . ..+..|+.|..+..+.+.+
T Consensus 112 g~Vy~Gs~~g~l~ald~~tG~--~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 112 EKVYTGSMRTIMYTINMLNGE--IISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp EEEEECEEEEEEEEEETTTCC--EEEEESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred CEEEEEecCCEEEEEECCCCc--EEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 478899999999999999999 455443211 10 1111111 0 1245677777777777766
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=82.66 E-value=26 Score=31.21 Aligned_cols=102 Identities=11% Similarity=0.024 Sum_probs=54.0
Q ss_pred EEeeCCCcEEEEE---ecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCCCCCCC
Q 011709 285 TFCPSSAQEFCSV---GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNG 360 (479)
Q Consensus 285 ~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~~~~~~ 360 (479)
.|++++..++.+- ..+..|...++.... ...+..+.. .+++| ++..|+-.+. ...|.+.++..
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~---~~~lt~~~~----~~~~~-~g~~iy~t~~g~~~Iy~~~l~g----- 176 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE---KKKIKNHYL----FTCNT-SDRYFYYNNPKNGQLYRYDTAS----- 176 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCC---CEEEESSCC----CCSEE-ETTEEEEECTTTCCEEEEETTT-----
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCC---eEEEeCCCc----eEeeE-ECCEEEEEeCCCceEEEEECCC-----
Confidence 6777775555554 344566666666444 223333322 45677 5555554443 67888888765
Q ss_pred CCCceeeecCCCCcEEEEEEecCCCcEEEEEeCCC-CEEEEeCCC
Q 011709 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-LLNIWDYEK 404 (479)
Q Consensus 361 ~~~~~~~~~~h~~~v~~l~~~p~~~~llas~s~Dg-~v~iwd~~~ 404 (479)
+. ...+.. +... ..++|++.+|+.+...++ .|..-++..
T Consensus 177 -~~-~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 177 -QS-EALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp -TE-EEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred -CC-EEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 22 222221 2222 346699998765554433 454445543
No 348
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=82.28 E-value=49 Score=34.13 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=23.6
Q ss_pred CCceeEEEecCCCCcEEEEEeCCCcEEEEE
Q 011709 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWD 169 (479)
Q Consensus 140 ~~~V~~l~~~p~~~~~lat~s~dg~i~iwd 169 (479)
.+.|.+|.++|.++..+..++..|.|...+
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~ 43 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD 43 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec
Confidence 468999999998778888888877766554
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.35 E-value=32 Score=36.43 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=30.6
Q ss_pred CCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee
Q 011709 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 324 ~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
..+.+++..+ +..+++|-+.|+++|+|++.+ ++++.+.
T Consensus 236 ~~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t------~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLS-TYNVLVMLSLDYKLKVLDLST------NQCVETI 273 (950)
T ss_dssp TCEEEEEEET-TTTEEEEEETTCEEEEEETTT------TEEEEEE
T ss_pred ceEEEEeecC-CCcEEEEEECCCEEEEEECCC------CCeEeee
Confidence 3567777777 788999999999999999988 5555543
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=77.52 E-value=44 Score=30.79 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=35.7
Q ss_pred CceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceee-ecc-C--------CCCeEEEEecCCCCcEEEEEeCCC
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKA-H--------DADLHCVDWNPLDDNLILTGSADN 346 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~-~--------~~~v~~l~~sp~~~~~l~tgs~dg 346 (479)
..+.+|.++|..+..++.+..++.|...+-.......+.. ... + ...+.+|.++|.+...|+.+...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 4578899987543445555444544443322222111100 000 0 135889999985557777777655
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=73.22 E-value=16 Score=35.71 Aligned_cols=98 Identities=11% Similarity=0.160 Sum_probs=62.6
Q ss_pred eEEEEeCCC----CCCCceeeeccCCCCeEEEEecCCCCcEEEEEeC-CCcEEEEecCCCCC---CCC----CCceeeec
Q 011709 302 CLILWDARV----GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTS---NGV----GSPINKFE 369 (479)
Q Consensus 302 ~i~iwd~~~----~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~-dg~I~iwd~~~~~~---~~~----~~~~~~~~ 369 (479)
.|.+.|.+. +. ...... .-......+..+| +|.++++++. +.++.++|++.... ... ...+.+..
T Consensus 299 gv~ViD~~~~~~~~~-~~~~~i-P~pksPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e 375 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDS-KFTRYV-PVPKNPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE 375 (638)
T ss_dssp CCCEEECSCBTTBCC-SSEEEE-EESSSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB
T ss_pred CeeEEccccccccCC-ceEEEE-eCCCCCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc
Confidence 467777776 22 122322 3344556789999 8888777665 78999999985211 000 01122222
Q ss_pred CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEeCCC
Q 011709 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 370 ~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
-.-.....+|.++|. .+.|.--|..|.-|++..
T Consensus 376 -~GlGPlHt~Fd~~G~-aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 376 -LGLGPLHTTFDGRGN-AYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp -CCSCEEEEEECSSSE-EEEEETTTTEEEEEEHHH
T ss_pred -CCCcccEEEECCCCc-eEeeeeecceEEEEeccH
Confidence 233566789999994 666666799999999976
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.38 E-value=49 Score=35.00 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=26.9
Q ss_pred ceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCC
Q 011709 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT 312 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 312 (479)
.+.+++..++. .++++.+.|+++|+|++.+++
T Consensus 237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp CEEEEEEETTT-TEEEEEETTCEEEEEETTTTE
T ss_pred eEEEEeecCCC-cEEEEEECCCEEEEEECCCCC
Confidence 46677776666 689999999999999999987
No 353
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=62.11 E-value=28 Score=31.61 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=37.7
Q ss_pred ecCCeEEEEeCCCCCCCceeeec--cCCCCeEEEEecC--------CCCcEEEEEeCCCcEEEEecCCCCCCCCCCceee
Q 011709 298 GDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNP--------LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367 (479)
Q Consensus 298 ~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~sp--------~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~ 367 (479)
+.||.|..+|..++......... ....++.. .=.| ..+..+++|+.+|.+...|+++ |+.+.+
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t------G~~~W~ 136 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN------GEIISA 136 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTT------CCEEEE
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCC------CcEEEE
Confidence 57888888888776521111110 11122221 1000 0356788999999999999988 666665
Q ss_pred ec
Q 011709 368 FE 369 (479)
Q Consensus 368 ~~ 369 (479)
+.
T Consensus 137 ~~ 138 (339)
T 2be1_A 137 FG 138 (339)
T ss_dssp ES
T ss_pred Ee
Confidence 54
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=59.72 E-value=1.1e+02 Score=28.24 Aligned_cols=122 Identities=11% Similarity=0.178 Sum_probs=67.0
Q ss_pred CceEEEEEe---eC----CCcEEEEEecCCeEEEEeCCCCCCCceeeec--------------cC----CCCeEEEEecC
Q 011709 279 DTVEDVTFC---PS----SAQEFCSVGDDSCLILWDARVGTSPVIKVEK--------------AH----DADLHCVDWNP 333 (479)
Q Consensus 279 ~~v~~l~~~---~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------~~----~~~v~~l~~sp 333 (479)
..++++++. |. +....++=+..+.|.++|+.+++ ..+.+. +. ...+..|+++|
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~--swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp 229 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD--SWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGD 229 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE--EEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc--EEEEccCCCccccCcceEECCEEeEeccCceEEEecC
Confidence 457788877 21 21234444456789999999876 222221 11 24788999999
Q ss_pred CC----CcEEEEEeCCC-cEEEEecCCCCCCCCCCceeeec--CCCCcEEEEEEe-cCCCcEEEEEeCCCCEEEEeCCC
Q 011709 334 LD----DNLILTGSADN-SVRMFDRRNLTSNGVGSPINKFE--GHSAAVLCVQWS-PDKSSVFGSSAEDGLLNIWDYEK 404 (479)
Q Consensus 334 ~~----~~~l~tgs~dg-~I~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~-p~~~~llas~s~Dg~v~iwd~~~ 404 (479)
+ ++.|+-....+ .+.-...+.+........+..+- +....-..++.+ .+|. |+++--....|..|+...
T Consensus 230 -~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~-ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 230 -RDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKV-IFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp -CCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCE-EEEEESSSSEEEEEETTS
T ss_pred -CcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCe-EEEEeccCCeEEEEeCCC
Confidence 5 56666665554 34444322111110112222221 111233456676 4554 677777788999999865
No 355
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=47.63 E-value=54 Score=32.36 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=38.0
Q ss_pred eEEEEecCCCCcEEEEEeCC------------CcEEEEecCCCCCCCCCCceeeecCC-CCcEEEEEEecCCCcEEEEE
Q 011709 326 LHCVDWNPLDDNLILTGSAD------------NSVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSSVFGSS 391 (479)
Q Consensus 326 v~~l~~sp~~~~~l~tgs~d------------g~I~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~llas~ 391 (479)
.-.|+|+| .+++++.-..+ ..+.+.+... ++....+.++ ...++.++|+|+++.||+..
T Consensus 478 PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~------g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT------GEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT------CCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCC------CeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 46799999 78866654432 1244445444 4444444444 46899999999999877553
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=47.01 E-value=2.4e+02 Score=28.50 Aligned_cols=127 Identities=14% Similarity=0.141 Sum_probs=60.1
Q ss_pred CeEEEEeCCCCCCCceeeeccCCCCe-EEEEecCCCCc-----EEEEEeCC---CcEEEEecCCCCCCCCCCceeeecCC
Q 011709 301 SCLILWDARVGTSPVIKVEKAHDADL-HCVDWNPLDDN-----LILTGSAD---NSVRMFDRRNLTSNGVGSPINKFEGH 371 (479)
Q Consensus 301 g~i~iwd~~~~~~~~~~~~~~~~~~v-~~l~~sp~~~~-----~l~tgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~h 371 (479)
..|+.|.+.+....-...+.+....+ .+...++ ++. .+++.+.+ ..+.+.|..... ..+..+...
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~ 289 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKN-----LKLQKINMP 289 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSS-----CEEEECCSC
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCC-----CcceEeecC
Confidence 57888888776432333333333333 3344555 444 34444422 356666765422 222333322
Q ss_pred CCcEEEEEEecCCCcEEEEE-e---------CCCCEEEEeCCCCCccccCCCCCCCCCCeeEEEeCCCCCceeEEEecCC
Q 011709 372 SAAVLCVQWSPDKSSVFGSS-A---------EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHSPSSSIKFVLRE 441 (479)
Q Consensus 372 ~~~v~~l~~~p~~~~llas~-s---------~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~gh~~~~~~~~sp~~ 441 (479)
... .+..+..+. +++.. + ..+.|.+.|+..+...- .+....+.++.+.....+.++.|..+.
T Consensus 290 ~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (711)
T 4hvt_A 290 SDA--TLQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTE-----SDKTSLKILFTPTANEVFNFISTTKDR 361 (711)
T ss_dssp TTC--EEEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCG-----GGCTTCEEEECCCTTEEEEEEEECSSC
T ss_pred Ccc--eEeeeECCE-EEEEECcccccccccCCCCeEEEEECCcccccc-----cccccceEEECCCCCCeEEEEEEECCE
Confidence 221 123444554 44422 1 35778888887631000 000112334555555557778887763
No 357
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=45.49 E-value=1.2e+02 Score=31.28 Aligned_cols=67 Identities=9% Similarity=0.094 Sum_probs=40.6
Q ss_pred CCceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeecc----CCCCeEEEEecCCCCcEEEEEeC
Q 011709 278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILTGSA 344 (479)
Q Consensus 278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~l~~sp~~~~~l~tgs~ 344 (479)
...|.+|+++|..+..++.+...+.|...+=....+..+..... ....|.+|+++|.+...++++..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g 84 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQG 84 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEEC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeC
Confidence 35799999999876778888877776655432222111111000 13469999999855555555543
No 358
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=45.20 E-value=66 Score=31.51 Aligned_cols=75 Identities=5% Similarity=-0.079 Sum_probs=54.3
Q ss_pred CceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCC-----------CCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCc
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-----------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS 347 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~ 347 (479)
.....+..+|+|..+++++--+.++.++|++... ..++... .-.-.....+|.+ +|+...|---|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-cCCCcccEEEECC-CCceEeeeeecce
Confidence 3456788999998777778889999999998421 1111122 2334567899999 8866667778999
Q ss_pred EEEEecCC
Q 011709 348 VRMFDRRN 355 (479)
Q Consensus 348 I~iwd~~~ 355 (479)
|--|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999975
No 359
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=43.13 E-value=2e+02 Score=26.44 Aligned_cols=98 Identities=7% Similarity=0.201 Sum_probs=52.2
Q ss_pred eEEEEeCCCC--CCCceeeec------cCCCCeEEEEec---CC---CCcEEEEEe-CCCcEEEEecCCCCCCCC-----
Q 011709 302 CLILWDARVG--TSPVIKVEK------AHDADLHCVDWN---PL---DDNLILTGS-ADNSVRMFDRRNLTSNGV----- 361 (479)
Q Consensus 302 ~i~iwd~~~~--~~~~~~~~~------~~~~~v~~l~~s---p~---~~~~l~tgs-~dg~I~iwd~~~~~~~~~----- 361 (479)
.|.+||+.+. + +++.+. .....++.+.+. |. ++.+++... ..+-|.|+|+.+......
T Consensus 124 kLv~~DL~t~~~~--li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~ 201 (381)
T 3q6k_A 124 AIVAYDLKQPNYP--EVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTF 201 (381)
T ss_dssp EEEEEESSSTTCC--EEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGG
T ss_pred eEEEEECCCCCce--eEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCC
Confidence 4666777776 5 444332 123567888887 21 134555544 467899999987321000
Q ss_pred -CC--ceeeecCC----CCcEEEEEEecC----CCcEEEEEeCCCCEEEEeCC
Q 011709 362 -GS--PINKFEGH----SAAVLCVQWSPD----KSSVFGSSAEDGLLNIWDYE 403 (479)
Q Consensus 362 -~~--~~~~~~~h----~~~v~~l~~~p~----~~~llas~s~Dg~v~iwd~~ 403 (479)
.. ....+.+. ...|..|+++|+ ++.|+...-.. -++|.+.
T Consensus 202 ~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss--~~ly~V~ 252 (381)
T 3q6k_A 202 KAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA--IKVYSVN 252 (381)
T ss_dssp SCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC--SEEEEEE
T ss_pred ccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC--CcEEEEE
Confidence 00 00011111 247889999998 67665555433 3444443
No 360
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=41.78 E-value=71 Score=31.51 Aligned_cols=29 Identities=10% Similarity=0.222 Sum_probs=23.1
Q ss_pred CCcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 186 RPDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 186 ~~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
+....+.++.+..+++++|+||++.|+..
T Consensus 520 ~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 520 EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45566778888889999999999877654
No 361
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=40.96 E-value=3e+02 Score=27.82 Aligned_cols=105 Identities=10% Similarity=0.227 Sum_probs=59.6
Q ss_pred ceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeeccCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 011709 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 359 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~ 359 (479)
.|.++....++ ..|..|+. +-|..+|..+++ ...........|.++.... ++.+ ..|+.+ -+.++|...
T Consensus 192 ~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~--~~~~~~l~~~~i~~i~~d~-~g~l-WigT~~-Gl~~~~~~~---- 260 (758)
T 3ott_A 192 FVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQ--IKQTEAFHNNSIKSLALDG-NGDL-LAGTDN-GLYVYHNDT---- 260 (758)
T ss_dssp CEEEEEEETTT-TEEEEEEE-EEEEEEETTTTE--EEEEEEEEEEEEEEEEECT-TCCE-EEEETT-EEEEECCTT----
T ss_pred eeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCe--EEeccCCCCCeEEEEEEcC-CCCE-EEEeCC-ceeEEecCC----
Confidence 47788777665 33444444 457888987665 2211111234588888876 5554 445544 577888765
Q ss_pred CCCCceeeec--------CCCCcEEEEEEecCCCcEEEEEeCCCCEEEEe
Q 011709 360 GVGSPINKFE--------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401 (479)
Q Consensus 360 ~~~~~~~~~~--------~h~~~v~~l~~~p~~~~llas~s~Dg~v~iwd 401 (479)
. .+..+. -....|.++....++. |. .|+..| +.++.
T Consensus 261 --~-~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW-iGT~~G-l~~~~ 304 (758)
T 3ott_A 261 --T-PLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IW-LGTDYG-ISLSR 304 (758)
T ss_dssp --S-CCEEECCCTTCTTSCSCSCEEEEEECTTCC-EE-EEESSS-EEEEC
T ss_pred --C-cEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EE-EEeCCc-ccccc
Confidence 2 222221 1234689998888887 33 455556 55543
No 362
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=39.91 E-value=1.2e+02 Score=29.72 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=41.5
Q ss_pred CCeEEEEecCCCCcEEEEEeC------------CCcEEEEecCCCCCCCCCCceeeecCC-CCcEEEEEEecCCCcEEEE
Q 011709 324 ADLHCVDWNPLDDNLILTGSA------------DNSVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSSVFGS 390 (479)
Q Consensus 324 ~~v~~l~~sp~~~~~l~tgs~------------dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~llas 390 (479)
.....|.|++ +|.+.+.-.. ...|..++... ++....+.+. ...++.++|+||++.|+++
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t------Gel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT------GEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT------CCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCC------CeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3456899999 7777663322 11456666554 4444444433 3578999999999988876
Q ss_pred EeCCC
Q 011709 391 SAEDG 395 (479)
Q Consensus 391 ~s~Dg 395 (479)
.-.-|
T Consensus 549 vQHPG 553 (592)
T 4a9v_A 549 IQHPG 553 (592)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 65433
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=39.74 E-value=37 Score=36.82 Aligned_cols=34 Identities=6% Similarity=0.018 Sum_probs=28.1
Q ss_pred ceeeeeecCCCCcEEEecCCCcEEEEecCCCccc
Q 011709 198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231 (479)
Q Consensus 198 ~v~~l~~s~~~~~l~s~s~dg~i~vwd~~~~~~~ 231 (479)
.+.+++..++..++++-+.|+++|+|++.++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 3456777778889999999999999999987553
No 364
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=38.07 E-value=1.6e+02 Score=29.99 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=39.1
Q ss_pred ceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCCCCceeeecc----CCCCeEEEEecCCCCcEEEEEe
Q 011709 280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILTGS 343 (479)
Q Consensus 280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~l~~sp~~~~~l~tgs 343 (479)
.|..|+++|.++..++.+...+.|...+-.......+..... ....|.+|+++|.+.+.++++.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 789999999876677777777776666533322111111001 1246999999985555555554
No 365
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=36.41 E-value=3.6e+02 Score=27.44 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=24.6
Q ss_pred ecCCCceeEEEecCCCCcEEEEEeCCCcEEEE
Q 011709 137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIW 168 (479)
Q Consensus 137 ~~h~~~V~~l~~~p~~~~~lat~s~dg~i~iw 168 (479)
++-.+.|.+|.++|.++..+..++..|.|...
T Consensus 17 ~g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S 48 (763)
T 3a0f_A 17 ISGGGFISGLVAHPTEKDLIYARTDIGGTYRW 48 (763)
T ss_dssp CCBCSCEEEEEECSSSTTCEEEEESSSCEEEE
T ss_pred ecCCCceeEEEeCCCCCCEEEEEeccCcEEEE
Confidence 45567899999999888888888877765444
No 366
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=35.19 E-value=54 Score=35.49 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=28.5
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCceeee
Q 011709 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF 368 (479)
Q Consensus 325 ~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~~~~~~~~~~~~~~ 368 (479)
.+.+++..+ +..+++|-+.|+++|||++.+ +.++.+.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t------~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLST------NQCVETI 275 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTT------TEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCC------CCeEEee
Confidence 344555566 778999999999999999988 5565553
No 367
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=30.83 E-value=57 Score=32.97 Aligned_cols=28 Identities=7% Similarity=0.347 Sum_probs=23.1
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 325 ~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
.|.++.+ +..+++|-+.|.++|+||+++
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t 250 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTS 250 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTT
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCC
Confidence 3555554 468999999999999999998
No 368
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=29.19 E-value=1.8e+02 Score=28.50 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=19.7
Q ss_pred CcEEEeccCCCceeeeeecCCCCcEEEe
Q 011709 187 PDLILTGHQDNAEFALAMCPTEPYVLSG 214 (479)
Q Consensus 187 ~~~~~~~h~~~~v~~l~~s~~~~~l~s~ 214 (479)
....+.+.....+++++|+||++.|+++
T Consensus 521 l~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 521 IRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred EEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3344555544568999999999877765
No 369
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=24.87 E-value=5.5e+02 Score=25.91 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=34.6
Q ss_pred CceEEEEEeeCCCcEEEEEecC-------CeEEEEeCCCCCCCceeeeccC--------CCCeEEEEecCCCCcEEEEEe
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDD-------SCLILWDARVGTSPVIKVEKAH--------DADLHCVDWNPLDDNLILTGS 343 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~--------~~~v~~l~~sp~~~~~l~tgs 343 (479)
..|.+|+++|.++..++.+... +...||-...+-..-....... ...+.+|+++|.+...|+++.
T Consensus 72 ~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 72 YGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp GCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 3589999998654444444321 1234454433221111111111 112467999997777777776
Q ss_pred CC
Q 011709 344 AD 345 (479)
Q Consensus 344 ~d 345 (479)
..
T Consensus 152 ~~ 153 (737)
T 2cn3_A 152 RC 153 (737)
T ss_dssp ST
T ss_pred cc
Confidence 43
No 370
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=24.07 E-value=3.8e+02 Score=23.84 Aligned_cols=176 Identities=9% Similarity=0.014 Sum_probs=90.3
Q ss_pred CceeEEEecCC--CCcEEEEEeCCCcEEEEECCCCCCccccCCCCCCCCcEEEeccCCCceeeeeecCCCCcEEEecCCC
Q 011709 141 GEVNRIRELPQ--NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK 218 (479)
Q Consensus 141 ~~V~~l~~~p~--~~~~lat~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~~~~~l~s~s~dg 218 (479)
..|..+...+. +...++..+.+|.|+--.+..-..... .......+... + .+..+........|+..+..|
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r-----~G~~~i~lke~-D-~lv~~~~~~~~d~ill~T~~G 167 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS-----GGIVAVNLRDN-D-ELVGAVLCSAGDDLLLVSANG 167 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS-----SCEESCBCCTT-C-CEEEEEEECTTCEEEEEETTS
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc-----CceEEEEECCC-C-EEEEEEEecCCCEEEEEECCC
Confidence 44555533331 466899999999999988765321110 00111122221 2 244444444555677778889
Q ss_pred cEEEEecCCCccccccCCcccccCCCCCceeecCCCCCCCCCCCCCCCCCCCceeecCCCCceEEEEEeeCCCcEEEEEe
Q 011709 219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 298 (479)
Q Consensus 219 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 298 (479)
.+..+............. ..+.....+. ....|.++...+.+ ..++.++
T Consensus 168 ~~~rf~~~~~eip~~gr~-----------------------------a~Gv~~i~L~-~~d~Vv~~~~~~~~-~~ll~~T 216 (327)
T 3uc1_A 168 QSIRFSATDEALRPMGRA-----------------------------TSGVQGMRFN-IDDRLLSLNVVREG-TYLLVAT 216 (327)
T ss_dssp EEEEEECCTTTSCCCCTT-----------------------------SBCEESSCCC-TTCCEEEEEECCTT-CEEEEEE
T ss_pred eEEEEECcccccCcCCcC-----------------------------CCCeeeecCC-CCCEEEEEEEECCC-CEEEEEe
Confidence 988887752111000000 0000001122 23446666555544 4688889
Q ss_pred cCCeEEEEeCCCCCC-----Cceeeec--cCCCCeEEEEecCCCCcEEEEEeCCCcEEEEecCC
Q 011709 299 DDSCLILWDARVGTS-----PVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355 (479)
Q Consensus 299 ~dg~i~iwd~~~~~~-----~~~~~~~--~~~~~v~~l~~sp~~~~~l~tgs~dg~I~iwd~~~ 355 (479)
..|.++.-.+..-.. .-+..+. .-...+..+.... +...++..+.+|.+.-++...
T Consensus 217 ~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 217 SGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVD-DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGGG
T ss_pred CCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehhh
Confidence 999998877543220 0111111 1133455544443 445666777788877777654
No 371
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=21.74 E-value=1e+02 Score=31.14 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=24.4
Q ss_pred CceEEEEEeeCCCcEEEEEecCCeEEEEeCCCCC
Q 011709 279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT 312 (479)
Q Consensus 279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 312 (479)
..|.++.+. . .++++.+.|.++|+||+++++
T Consensus 222 ~~Is~~~~~--~-~fLftL~~Dh~LRiWsL~t~~ 252 (729)
T 3f7f_A 222 SVISCKLFH--E-RYLIVLTQNCHLKIWDLTSFT 252 (729)
T ss_dssp CEEEEEEET--T-TEEEEEETTCEEEEEETTTTE
T ss_pred ceEEEeccC--C-cEEEEEEcCCeEEEEEcCCCc
Confidence 345555442 3 689999999999999999987
Done!