Query 011710
Match_columns 479
No_of_seqs 289 out of 3177
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 04:23:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 1.9E-29 4E-34 226.5 9.5 381 17-428 73-462 (483)
2 KOG4341 F-box protein containi 99.9 1.3E-27 2.8E-32 214.7 10.0 317 58-403 137-461 (483)
3 KOG4194 Membrane glycoprotein 99.8 6.3E-22 1.4E-26 185.2 2.6 297 58-405 124-427 (873)
4 PLN00113 leucine-rich repeat r 99.8 6.3E-19 1.4E-23 191.1 13.6 205 57-289 138-342 (968)
5 PLN00113 leucine-rich repeat r 99.8 1.8E-18 4E-23 187.5 13.0 248 58-343 117-366 (968)
6 cd00116 LRR_RI Leucine-rich re 99.8 2.7E-16 5.8E-21 148.8 24.6 167 228-404 137-317 (319)
7 KOG4194 Membrane glycoprotein 99.8 2.3E-20 5.1E-25 174.8 -4.2 342 6-402 89-447 (873)
8 KOG2120 SCF ubiquitin ligase, 99.7 5.2E-17 1.1E-21 140.5 10.4 255 153-427 138-396 (419)
9 KOG2120 SCF ubiquitin ligase, 99.7 1.8E-17 3.8E-22 143.4 7.1 249 58-335 135-389 (419)
10 KOG1909 Ran GTPase-activating 99.7 4.3E-16 9.2E-21 138.0 12.3 256 150-418 29-325 (382)
11 cd00116 LRR_RI Leucine-rich re 99.7 1.4E-14 3E-19 137.0 23.7 259 136-405 8-289 (319)
12 PLN03210 Resistant to P. syrin 99.6 3E-15 6.6E-20 163.0 13.5 125 58-212 610-734 (1153)
13 KOG0444 Cytoskeletal regulator 99.6 3.3E-17 7.2E-22 155.1 -6.4 336 6-405 18-373 (1255)
14 KOG1909 Ran GTPase-activating 99.5 3.5E-14 7.6E-19 126.0 11.0 217 149-390 90-322 (382)
15 KOG1947 Leucine rich repeat pr 99.5 2.9E-13 6.2E-18 135.9 13.1 255 137-405 174-438 (482)
16 KOG1947 Leucine rich repeat pr 99.5 3E-13 6.5E-18 135.7 12.2 246 146-405 156-412 (482)
17 KOG0444 Cytoskeletal regulator 99.5 2.7E-15 5.7E-20 142.4 -3.9 201 148-381 170-376 (1255)
18 PLN03210 Resistant to P. syrin 99.4 7E-13 1.5E-17 144.7 10.5 247 114-407 631-906 (1153)
19 COG5238 RNA1 Ran GTPase-activa 99.3 2.7E-11 5.9E-16 104.1 9.5 90 307-404 185-282 (388)
20 KOG0618 Serine/threonine phosp 99.2 3E-12 6.6E-17 127.3 -1.7 34 58-95 176-210 (1081)
21 KOG3207 Beta-tubulin folding c 99.1 1.5E-11 3.3E-16 112.5 1.9 208 58-288 120-335 (505)
22 KOG0618 Serine/threonine phosp 99.1 5.5E-12 1.2E-16 125.4 -1.3 57 229-288 360-416 (1081)
23 KOG3207 Beta-tubulin folding c 99.1 2.3E-11 4.9E-16 111.4 1.9 160 115-289 119-281 (505)
24 COG5238 RNA1 Ran GTPase-activa 98.9 4E-08 8.6E-13 85.0 15.1 202 175-405 28-253 (388)
25 PRK15387 E3 ubiquitin-protein 98.9 3.6E-09 7.8E-14 108.2 6.8 245 58-388 221-465 (788)
26 PRK15387 E3 ubiquitin-protein 98.9 5.4E-09 1.2E-13 106.9 8.0 264 59-413 201-465 (788)
27 KOG2982 Uncharacterized conser 98.8 4.2E-09 9.2E-14 92.1 4.0 233 153-426 47-287 (418)
28 KOG3665 ZYG-1-like serine/thre 98.7 4.8E-08 1E-12 99.6 10.7 214 58-287 59-283 (699)
29 KOG3665 ZYG-1-like serine/thre 98.7 8E-08 1.7E-12 98.0 12.0 159 177-341 122-283 (699)
30 KOG4237 Extracellular matrix p 98.7 2E-09 4.3E-14 97.6 -1.9 147 7-188 53-199 (498)
31 PRK15370 E3 ubiquitin-protein 98.6 3.7E-07 8E-12 94.1 10.9 34 58-95 198-231 (754)
32 PRK15370 E3 ubiquitin-protein 98.5 3.4E-07 7.3E-12 94.4 9.9 205 151-405 220-426 (754)
33 KOG4237 Extracellular matrix p 98.5 1.2E-08 2.6E-13 92.7 -0.7 84 307-405 274-357 (498)
34 KOG0472 Leucine-rich repeat pr 98.4 1.9E-08 4.1E-13 91.6 -1.7 36 366-405 504-539 (565)
35 PF14580 LRR_9: Leucine-rich r 98.4 2.7E-08 5.8E-13 83.2 -1.3 128 254-404 20-150 (175)
36 KOG0472 Leucine-rich repeat pr 98.4 3.5E-08 7.5E-13 90.0 -1.3 109 247-381 429-541 (565)
37 PF14580 LRR_9: Leucine-rich r 98.3 5.7E-07 1.2E-11 75.3 3.3 40 226-266 86-126 (175)
38 KOG1259 Nischarin, modulator o 98.2 7.8E-07 1.7E-11 78.3 3.1 145 251-422 282-434 (490)
39 KOG3864 Uncharacterized conser 98.2 1.9E-06 4.2E-11 71.6 4.7 103 308-422 102-208 (221)
40 KOG3864 Uncharacterized conser 98.1 2.8E-06 6E-11 70.7 4.1 89 254-347 102-190 (221)
41 KOG2982 Uncharacterized conser 98.1 5.6E-06 1.2E-10 72.9 5.9 195 140-345 60-261 (418)
42 KOG1259 Nischarin, modulator o 97.9 1.8E-06 4E-11 76.0 -0.1 127 226-378 282-410 (490)
43 KOG4308 LRR-containing protein 97.7 2.4E-05 5.2E-10 76.7 4.1 315 61-405 89-443 (478)
44 PF13855 LRR_8: Leucine rich r 97.6 1.3E-05 2.7E-10 54.8 -0.0 59 204-264 2-60 (61)
45 KOG4658 Apoptotic ATPase [Sign 97.5 7.4E-05 1.6E-09 78.8 4.5 107 58-187 544-652 (889)
46 KOG1859 Leucine-rich repeat pr 97.5 1.4E-05 3.1E-10 78.8 -1.2 108 148-265 184-291 (1096)
47 KOG0617 Ras suppressor protein 97.5 1.2E-06 2.6E-11 70.7 -7.1 32 152-186 34-65 (264)
48 KOG4658 Apoptotic ATPase [Sign 97.5 5.1E-05 1.1E-09 80.0 2.5 236 149-405 543-781 (889)
49 PF13855 LRR_8: Leucine rich r 97.5 2.9E-05 6.4E-10 53.0 0.5 59 228-289 1-59 (61)
50 KOG1859 Leucine-rich repeat pr 97.4 1E-05 2.2E-10 79.8 -3.1 106 226-344 185-290 (1096)
51 KOG0617 Ras suppressor protein 97.4 6.6E-07 1.4E-11 72.2 -9.9 18 249-266 52-69 (264)
52 KOG4308 LRR-containing protein 97.3 6.1E-05 1.3E-09 73.9 -0.1 218 153-382 89-333 (478)
53 KOG2739 Leucine-rich acidic nu 97.0 0.0003 6.6E-09 61.3 1.7 110 278-405 42-154 (260)
54 KOG2739 Leucine-rich acidic nu 96.8 8.3E-05 1.8E-09 64.8 -3.4 63 278-343 64-126 (260)
55 PRK15386 type III secretion pr 96.7 0.0035 7.5E-08 59.6 6.0 57 150-216 51-107 (426)
56 smart00367 LRR_CC Leucine-rich 96.6 0.0032 6.9E-08 34.2 3.1 22 333-354 2-23 (26)
57 PLN03150 hypothetical protein; 96.6 0.0044 9.5E-08 63.9 6.5 105 230-345 420-527 (623)
58 PLN03150 hypothetical protein; 96.6 0.0051 1.1E-07 63.4 6.8 106 254-379 419-527 (623)
59 PF12799 LRR_4: Leucine Rich r 96.3 0.0072 1.6E-07 37.7 3.9 38 228-267 1-38 (44)
60 smart00367 LRR_CC Leucine-rich 96.3 0.005 1.1E-07 33.4 2.7 25 366-390 1-25 (26)
61 COG4886 Leucine-rich repeat (L 96.1 0.0047 1E-07 60.2 3.5 189 63-289 97-287 (394)
62 KOG1644 U2-associated snRNP A' 96.1 0.0041 9E-08 52.2 2.4 86 307-405 64-151 (233)
63 PRK15386 type III secretion pr 96.1 0.015 3.3E-07 55.4 6.5 139 200-378 49-188 (426)
64 KOG1644 U2-associated snRNP A' 95.9 0.0067 1.4E-07 51.0 3.0 39 226-265 62-100 (233)
65 KOG2123 Uncharacterized conser 95.9 0.0021 4.5E-08 56.7 0.0 54 58-125 18-71 (388)
66 COG4886 Leucine-rich repeat (L 95.8 0.0095 2.1E-07 58.1 4.2 59 204-266 141-199 (394)
67 PF12799 LRR_4: Leucine Rich r 95.5 0.013 2.9E-07 36.5 2.6 35 59-95 1-35 (44)
68 KOG2123 Uncharacterized conser 95.2 0.0057 1.2E-07 54.0 0.1 113 227-353 18-134 (388)
69 KOG0531 Protein phosphatase 1, 94.4 0.006 1.3E-07 59.8 -2.0 107 148-266 92-199 (414)
70 KOG4579 Leucine-rich repeat (L 94.3 0.012 2.7E-07 46.3 0.1 63 223-289 48-110 (177)
71 PF13516 LRR_6: Leucine Rich r 93.9 0.059 1.3E-06 28.4 2.2 22 253-274 2-23 (24)
72 PF13516 LRR_6: Leucine Rich r 93.8 0.047 1E-06 28.8 1.7 19 334-353 3-21 (24)
73 KOG4579 Leucine-rich repeat (L 92.4 0.053 1.1E-06 42.8 0.8 107 153-266 29-136 (177)
74 KOG0531 Protein phosphatase 1, 92.1 0.043 9.2E-07 53.8 -0.0 100 201-316 93-195 (414)
75 KOG0532 Leucine-rich repeat (L 90.7 0.017 3.6E-07 56.3 -4.2 127 152-289 144-270 (722)
76 smart00368 LRR_RI Leucine rich 89.5 0.53 1.1E-05 25.9 2.8 23 253-275 2-24 (28)
77 smart00368 LRR_RI Leucine rich 89.3 0.65 1.4E-05 25.5 3.1 22 334-356 3-24 (28)
78 KOG0532 Leucine-rich repeat (L 87.3 0.07 1.5E-06 52.2 -2.6 153 224-404 117-270 (722)
79 KOG3763 mRNA export factor TAP 86.9 1.2 2.7E-05 43.7 5.3 85 329-423 214-306 (585)
80 PF13306 LRR_5: Leucine rich r 83.5 0.38 8.2E-06 38.2 0.2 11 150-160 34-44 (129)
81 PF13504 LRR_7: Leucine rich r 82.2 1 2.3E-05 21.4 1.4 12 254-265 2-13 (17)
82 PF13306 LRR_5: Leucine rich r 79.4 0.51 1.1E-05 37.4 -0.4 10 226-235 33-42 (129)
83 KOG3763 mRNA export factor TAP 74.1 4.2 9.2E-05 40.2 4.1 66 277-346 216-283 (585)
84 KOG1832 HIV-1 Vpr-binding prot 62.1 2.9 6.4E-05 43.4 0.4 10 393-402 1299-1308(1516)
85 PF00560 LRR_1: Leucine Rich R 57.6 5.5 0.00012 20.3 0.8 13 254-266 1-13 (22)
86 smart00369 LRR_TYP Leucine-ric 55.0 11 0.00023 20.0 1.7 15 253-267 2-16 (26)
87 smart00370 LRR Leucine-rich re 55.0 11 0.00023 20.0 1.7 15 253-267 2-16 (26)
88 KOG3735 Tropomodulin and leiom 52.1 21 0.00045 33.2 4.0 29 328-357 250-278 (353)
89 PF07723 LRR_2: Leucine Rich R 51.6 11 0.00025 20.2 1.4 8 309-316 2-9 (26)
90 KOG4242 Predicted myosin-I-bin 49.5 26 0.00055 34.3 4.3 19 365-384 438-456 (553)
91 PHA02608 67 prohead core prote 43.4 17 0.00037 25.3 1.6 14 449-462 38-51 (80)
92 KOG3735 Tropomodulin and leiom 40.7 74 0.0016 29.7 5.7 90 307-403 198-292 (353)
93 smart00365 LRR_SD22 Leucine-ri 37.9 30 0.00066 18.6 1.7 14 253-266 2-15 (26)
94 PF05756 S-antigen: S-antigen 28.9 33 0.00071 23.8 1.2 14 449-462 55-68 (94)
95 COG5129 MAK16 Nuclear protein 23.3 40 0.00087 28.9 1.0 12 447-458 227-238 (303)
96 PF07735 FBA_2: F-box associat 22.0 2.6E+02 0.0057 18.9 5.6 31 370-401 35-69 (70)
97 smart00364 LRR_BAC Leucine-ric 21.2 59 0.0013 17.6 1.0 14 253-266 2-15 (26)
98 PF02020 W2: eIF4-gamma/eIF5/e 20.6 67 0.0015 23.1 1.6 15 448-462 66-80 (84)
99 KOG4032 Uncharacterized conser 20.4 38 0.00082 28.3 0.3 12 407-418 106-117 (184)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=1.9e-29 Score=226.47 Aligned_cols=381 Identities=21% Similarity=0.271 Sum_probs=303.4
Q ss_pred HhhhhccceeeccccchhhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeec--CccChhHHHHHHHcCC-CccEEeccC
Q 011710 17 ALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSV--DYITDAMVGTISQGLV-SLTHLDLRD 93 (479)
Q Consensus 17 ~~~p~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~--~~~~~~~~~~l~~~~~-~L~~L~l~~ 93 (479)
..+||.+....++++..|.+.+..+++.. |...... -.+.++.++.. -.+...++..+.+++. .|+.|.++|
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~----~n~~AlD-~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG 147 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTM----WNKLALD-GSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRG 147 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHH----hhhhhhc-cccceeeehhcchhcCCCcceehHhhhhccccccccccc
Confidence 34566777777777766665554433321 1111111 22334444441 2334455556666554 688999998
Q ss_pred CCCCCCccccccchHHHHhhh-cCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHH
Q 011710 94 APLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTI 172 (479)
Q Consensus 94 ~~~l~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 172 (479)
|. .+.+..+..+. .||++++|.+. ++..+++..+..++..|++|+.|++..|..+++..++.+
T Consensus 148 ~r--------~v~~sslrt~~~~CpnIehL~l~--------gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 148 CR--------AVGDSSLRTFASNCPNIEHLALY--------GCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred cc--------cCCcchhhHHhhhCCchhhhhhh--------cceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 85 34455555444 78999999884 467888888888989999999999999999999888888
Q ss_pred HHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhh-cCCCCCEEecCCCCCCChHHHHhhh-
Q 011710 173 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS- 250 (479)
Q Consensus 173 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~- 250 (479)
...|++|+.|+++.|+.++..++..+.+.+..++.+.+.||...+...+.... .++-+..+++..|+.+++..+..+.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 89999999999999999988888889998888999988899888877766554 6777888888889889988877666
Q ss_pred cCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHH
Q 011710 251 SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLA 329 (479)
Q Consensus 251 ~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 329 (479)
.+..|+.|..+++ .+++..+..+++ .+++|+.|.+++|.++++.++..++..| +.|+.+++..|..+.+..+..++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~-~~~~L~~l~l~~c~~fsd~~ft~l~rn~--~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQ-HCHNLQVLELSGCQQFSDRGFTMLGRNC--PHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhc-CCCceEEEeccccchhhhhhhhhhhcCC--hhhhhhcccccceehhhhHhhhc
Confidence 6788999999886 788899999999 8999999999999999999999999988 89999999999888888888999
Q ss_pred hcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC--CH
Q 011710 330 TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV--NR 407 (479)
Q Consensus 330 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~--~~ 407 (479)
.+||.|+.|.+++|..++|.|+..+..-.- ....|+.+.+++|+.+++..+..+.. |++|+.+++.+|. ..
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c-----~~~~l~~lEL~n~p~i~d~~Le~l~~--c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSC-----SLEGLEVLELDNCPLITDATLEHLSI--CRNLERIELIDCQDVTK 441 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccc-----cccccceeeecCCCCchHHHHHHHhh--Ccccceeeeechhhhhh
Confidence 999999999999999999998888766332 57889999999999999999999876 9999999999997 67
Q ss_pred HHHHHHHhcCCCceeeccCcc
Q 011710 408 DILDALARSRPFLNVACRGEE 428 (479)
Q Consensus 408 ~~~~~~~~~~p~l~~~~~~~~ 428 (479)
..+.+++...|.+++......
T Consensus 442 ~~i~~~~~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 442 EAISRFATHLPNIKVHAYFAP 462 (483)
T ss_pred hhhHHHHhhCccceehhhccC
Confidence 789999999999988765543
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=214.65 Aligned_cols=317 Identities=24% Similarity=0.388 Sum_probs=286.8
Q ss_pred CCCCcEEEeec-CccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhh-cCCCccEEecccccccccccc
Q 011710 58 LPGIQKLCLSV-DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 58 ~~~L~~L~L~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~ 135 (479)
...|+.|.+++ ..+.+..+..+...||++++|.+.+|. ++++..+..+. .|++|++|++.. |
T Consensus 137 gg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--------~iTd~s~~sla~~C~~l~~l~L~~--------c 200 (483)
T KOG4341|consen 137 GGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--------KITDSSLLSLARYCRKLRHLNLHS--------C 200 (483)
T ss_pred ccccccccccccccCCcchhhHHhhhCCchhhhhhhcce--------eccHHHHHHHHHhcchhhhhhhcc--------c
Confidence 35789999996 578889999999999999999999995 68888888887 899999999964 6
Q ss_pred cccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 011710 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 215 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (479)
..+++..++.++..|++|+.|+++.|+.+...++..+.+++..++.+...||.......+..+...++-+.++++..|..
T Consensus 201 ~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 201 SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred chhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 88999999999999999999999999999998899999999999999888999999999998888999999999999999
Q ss_pred CCHHHHHHhh-cCCCCCEEecCCCCCCChHHHHhhh-cCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCCC
Q 011710 216 LTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRL 292 (479)
Q Consensus 216 ~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~l 292 (479)
+++.++..+. .+..|+.|..++|..+++..+..++ ++++|+.|-+..| .+++.++..++. .++.|+.+++.+|..+
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-n~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-NCPHLERLDLEECGLI 359 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-CChhhhhhccccccee
Confidence 9999877766 7889999999999999999888887 7899999999999 699999999999 9999999999999988
Q ss_pred CHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHh---cCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCc
Q 011710 293 TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSI 369 (479)
Q Consensus 293 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L 369 (479)
++..+..++..| +.|+.+.++.|..++++++..+.. +...|+.+.+++|+.+++..++.+.. |++|
T Consensus 360 ~d~tL~sls~~C--~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~---------c~~L 428 (483)
T KOG4341|consen 360 TDGTLASLSRNC--PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI---------CRNL 428 (483)
T ss_pred hhhhHhhhccCC--chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh---------Cccc
Confidence 888899999988 999999999999999998886643 45789999999999999999998885 9999
Q ss_pred eEEEccCCCCCCHHHHHHhhccCCCCccEEEecC
Q 011710 370 RLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTG 403 (479)
Q Consensus 370 ~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~ 403 (479)
+.+++-+|..++..++..+.. .+|+++...+..
T Consensus 429 eri~l~~~q~vtk~~i~~~~~-~lp~i~v~a~~a 461 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFAT-HLPNIKVHAYFA 461 (483)
T ss_pred ceeeeechhhhhhhhhHHHHh-hCccceehhhcc
Confidence 999999999999999999987 899998877654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=6.3e-22 Score=185.16 Aligned_cols=297 Identities=19% Similarity=0.180 Sum_probs=169.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
..+|+.|+|..|.|+...-+.+. .+|.|++|||+.|. ++....+.+..-.++++|+++. +.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~-~l~alrslDLSrN~---------is~i~~~sfp~~~ni~~L~La~---------N~ 184 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELS-ALPALRSLDLSRNL---------ISEIPKPSFPAKVNIKKLNLAS---------NR 184 (873)
T ss_pred ccceeEEeeeccccccccHHHHH-hHhhhhhhhhhhch---------hhcccCCCCCCCCCceEEeecc---------cc
Confidence 56899999998888776666664 78999999999873 3332333344456788888864 44
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
++.-....+ ..+.+|..|.|+. ++++....+.+ +.+++|+.|++..+..--..+ .-++.+++|+.|.|.. +.+.
T Consensus 185 It~l~~~~F-~~lnsL~tlkLsr-NrittLp~r~F-k~L~~L~~LdLnrN~irive~--ltFqgL~Sl~nlklqr-N~I~ 258 (873)
T KOG4194|consen 185 ITTLETGHF-DSLNSLLTLKLSR-NRITTLPQRSF-KRLPKLESLDLNRNRIRIVEG--LTFQGLPSLQNLKLQR-NDIS 258 (873)
T ss_pred ccccccccc-cccchheeeeccc-CcccccCHHHh-hhcchhhhhhccccceeeehh--hhhcCchhhhhhhhhh-cCcc
Confidence 444333333 2356788888888 67776644443 668888888887655311111 1234556666666665 3443
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC---H
Q 011710 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---D 294 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~---~ 294 (479)
...-..+-.+.++++|++.. +.+....-..+-++++|+.|++++|.|.......+.. +++|+.|+++.+ .++ .
T Consensus 259 kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf--tqkL~~LdLs~N-~i~~l~~ 334 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF--TQKLKELDLSSN-RITRLDE 334 (873)
T ss_pred cccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccchhhhheeecchhhh--cccceeEecccc-ccccCCh
Confidence 33222333566667776665 3444444444446666666666666555555555554 666666666652 233 3
Q ss_pred HHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCC----HHHHHHHHhccccCCCcCCCCce
Q 011710 295 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIG----DTSVIALASMLVDDDRWYGSSIR 370 (479)
Q Consensus 295 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~----~~~~~~l~~~~~~~~~~~~~~L~ 370 (479)
..+..+ ..|++|.|+. +.++...-.+ +..+.+|++|+|++| .+. | +... .. .+++|+
T Consensus 335 ~sf~~L------~~Le~LnLs~-Nsi~~l~e~a-f~~lssL~~LdLr~N-~ls~~IED-aa~~-f~--------gl~~Lr 395 (873)
T KOG4194|consen 335 GSFRVL------SQLEELNLSH-NSIDHLAEGA-FVGLSSLHKLDLRSN-ELSWCIED-AAVA-FN--------GLPSLR 395 (873)
T ss_pred hHHHHH------HHhhhhcccc-cchHHHHhhH-HHHhhhhhhhcCcCC-eEEEEEec-chhh-hc--------cchhhh
Confidence 444444 5566666666 3444222111 124556666666665 222 2 1111 11 456666
Q ss_pred EEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 371 LLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 371 ~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.|.+.+|+ +....-.++.. +++|++|++.+|.
T Consensus 396 kL~l~gNq-lk~I~krAfsg--l~~LE~LdL~~Na 427 (873)
T KOG4194|consen 396 KLRLTGNQ-LKSIPKRAFSG--LEALEHLDLGDNA 427 (873)
T ss_pred heeecCce-eeecchhhhcc--CcccceecCCCCc
Confidence 66666665 55554555543 6666666666654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=6.3e-19 Score=191.09 Aligned_cols=205 Identities=20% Similarity=0.153 Sum_probs=98.9
Q ss_pred CCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccccccccccccc
Q 011710 57 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 136 (479)
Q Consensus 57 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 136 (479)
.+++|++|+|+++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~---------l~~~~p~~~~~l~~L~~L~L~~n--------- 198 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNV---------LVGKIPNSLTNLTSLEFLTLASN--------- 198 (968)
T ss_pred ccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCc---------ccccCChhhhhCcCCCeeeccCC---------
Confidence 47788888888777664444444 367888888888774 22222234556677777777542
Q ss_pred ccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCC
Q 011710 137 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 216 (479)
Q Consensus 137 ~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (479)
.+.......+ ..+++|+.|+++++ .+....... +..+++|++|++++|..... +......+++|+.|+++++ .+
T Consensus 199 ~l~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n-~l 272 (968)
T PLN00113 199 QLVGQIPREL-GQMKSLKWIYLGYN-NLSGEIPYE-IGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQN-KL 272 (968)
T ss_pred CCcCcCChHH-cCcCCccEEECcCC-ccCCcCChh-HhcCCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCC-ee
Confidence 1111111111 33556666666653 333221222 24456666666655432111 1112234455666666553 22
Q ss_pred CHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011710 217 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
.......+..+++|+.|++++| .+.......+.++++|+.|++++|.+.......+.. +++|+.|++++|
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n 342 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS--LPRLQVLQLWSN 342 (968)
T ss_pred eccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc--CCCCCEEECcCC
Confidence 2211223334555555555553 233223333445555555555555444332222222 555555555553
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=1.8e-18 Score=187.46 Aligned_cols=248 Identities=19% Similarity=0.103 Sum_probs=132.0
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
+++|++|+|+++.+...... ..+++|++|++++|. ++......+..+++|++|+++++ .
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~---------~~~~~p~~~~~l~~L~~L~L~~n---------~ 175 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNM---------LSGEIPNDIGSFSSLKVLDLGGN---------V 175 (968)
T ss_pred CCCCCEEECcCCccccccCc---cccCCCCEEECcCCc---------ccccCChHHhcCCCCCEEECccC---------c
Confidence 45566666665544332111 135566666666553 22222334556777777777541 1
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+.......+ ..+++|+.|++++| .+....... +..+++|+.|+++++..... +......+++|++|++++| .+.
T Consensus 176 l~~~~p~~~-~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n-~l~ 249 (968)
T PLN00113 176 LVGKIPNSL-TNLTSLEFLTLASN-QLVGQIPRE-LGQMKSLKWIYLGYNNLSGE--IPYEIGGLTSLNHLDLVYN-NLT 249 (968)
T ss_pred ccccCChhh-hhCcCCCeeeccCC-CCcCcCChH-HcCcCCccEEECcCCccCCc--CChhHhcCCCCCEEECcCc-eec
Confidence 111111112 34677777777774 443322222 24567777777776543211 1112345667777777774 333
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC--HH
Q 011710 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DK 295 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~--~~ 295 (479)
......+..+++|+.|++++| .+.......+..+++|+.|++++|.+.......+. .+++|+.|+++++.... +.
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred cccChhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCccCCcCCh
Confidence 323334567777888877774 44433444556677788888887766543333333 37778888887754221 12
Q ss_pred HHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCC
Q 011710 296 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQC 343 (479)
Q Consensus 296 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 343 (479)
.+.. +++|+.|++++| .+.......+ ..+++|+.|++++|
T Consensus 327 ~~~~------l~~L~~L~L~~n-~l~~~~p~~l-~~~~~L~~L~Ls~n 366 (968)
T PLN00113 327 ALTS------LPRLQVLQLWSN-KFSGEIPKNL-GKHNNLTVLDLSTN 366 (968)
T ss_pred hHhc------CCCCCEEECcCC-CCcCcCChHH-hCCCCCcEEECCCC
Confidence 2222 267788888774 4432211122 24667777777766
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=2.7e-16 Score=148.78 Aligned_cols=167 Identities=26% Similarity=0.249 Sum_probs=86.6
Q ss_pred CCCCEEecCCCCCCChHHH----HhhhcCCCCcEEEccCCCCchHHHHHHHh--hcCCCccEEecCCCCCCCHHHHHHHh
Q 011710 228 TGIKVLDLRDCKNLGDEAL----RAISSLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISALF 301 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~l~~~~l~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~l~ 301 (479)
++|+.|++++| .++.... ..+..+++|+.|++++|.+++.++..+.. ..+++|++|++++| .+++.+...+.
T Consensus 137 ~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~ 214 (319)
T cd00116 137 PALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALA 214 (319)
T ss_pred CCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHH
Confidence 55666666654 2332221 22334556666666666665544443332 02346666666664 34444333322
Q ss_pred cc-CCCCCccEEecCCCCCCCHHHHHHHHhcC----CCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccC
Q 011710 302 DG-TSKLQLQELDLSNLPHLSDNGILTLATCR----VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 376 (479)
Q Consensus 302 ~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~----~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 376 (479)
.. ..+++|++|++++| .+++.++..+...+ +.|+.|++++| .+++.+...+..... .+++|+.+++++
T Consensus 215 ~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~-----~~~~L~~l~l~~ 287 (319)
T cd00116 215 ETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLA-----EKESLLELDLRG 287 (319)
T ss_pred HHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHh-----cCCCccEEECCC
Confidence 11 11256777777764 56655555554443 56777777776 666555555544333 356677777777
Q ss_pred CCCCCHHHHHHhhcc--CC-CCccEEEecCC
Q 011710 377 CGGITQLAFRWLKKP--YF-PRLRWLGVTGS 404 (479)
Q Consensus 377 c~~i~~~~~~~l~~~--~~-~~L~~L~l~~~ 404 (479)
|. +++.+...+... .. +.|+.+++.++
T Consensus 288 N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 288 NK-FGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CC-CcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 76 665544333320 12 46666666554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=2.3e-20 Score=174.76 Aligned_cols=342 Identities=18% Similarity=0.185 Sum_probs=221.9
Q ss_pred cccchhHHHHHHhhhhccceeeccccchhhhhhccCC-------CCCCCCC--CCccCCCCCCCCcEEEeecCccChhHH
Q 011710 6 LFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSP-------NVEPHQS--PNQIRPSILPGIQKLCLSVDYITDAMV 76 (479)
Q Consensus 6 ~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~ 76 (479)
++.+-++. +|..+| +|+.+.+.+.-...++.+... .+.+... -.......++.|++|||+.|.+.....
T Consensus 89 kl~~id~~-~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~ 166 (873)
T KOG4194|consen 89 KLSHIDFE-FFYNLP-NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK 166 (873)
T ss_pred ccccCcHH-HHhcCC-cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccC
Confidence 45556655 667788 999998874322222222110 0000000 011123448999999999887776433
Q ss_pred HHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeE
Q 011710 77 GTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESI 156 (479)
Q Consensus 77 ~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L 156 (479)
..+. .-+++++|+|++|. |+......+..+.+|..|.+++ +....++...+ +++++|+.|
T Consensus 167 ~sfp-~~~ni~~L~La~N~---------It~l~~~~F~~lnsL~tlkLsr------NrittLp~r~F----k~L~~L~~L 226 (873)
T KOG4194|consen 167 PSFP-AKVNIKKLNLASNR---------ITTLETGHFDSLNSLLTLKLSR------NRITTLPQRSF----KRLPKLESL 226 (873)
T ss_pred CCCC-CCCCceEEeecccc---------ccccccccccccchheeeeccc------CcccccCHHHh----hhcchhhhh
Confidence 3332 45689999999984 6665666677777899999975 22333433333 568899999
Q ss_pred EEcCCCccCHHHHHHHHHhCCCCceEEecCCCC--CCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEe
Q 011710 157 CLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQ--LTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLD 234 (479)
Q Consensus 157 ~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 234 (479)
+|.. +.+.....-. ++++++|+.|.+..+.. +.+. .+..+.++++|+|.. +.+....-..+..+++|+.|+
T Consensus 227 dLnr-N~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG----~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 227 DLNR-NRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDG----AFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred hccc-cceeeehhhh-hcCchhhhhhhhhhcCcccccCc----ceeeecccceeeccc-chhhhhhcccccccchhhhhc
Confidence 9988 5655332222 37789999998887653 3333 233577999999988 566665555566889999999
Q ss_pred cCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCH---HHHHHHhccCCCCCccE
Q 011710 235 LRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD---KCISALFDGTSKLQLQE 311 (479)
Q Consensus 235 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~~~~~~~L~~ 311 (479)
++. +.+..........+++|+.|+|++|.++.-.-..+.. +..|++|+++++ .+.. ..+..+ ++|++
T Consensus 300 lS~-NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~--L~~Le~LnLs~N-si~~l~e~af~~l------ssL~~ 369 (873)
T KOG4194|consen 300 LSY-NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV--LSQLEELNLSHN-SIDHLAEGAFVGL------SSLHK 369 (873)
T ss_pred cch-hhhheeecchhhhcccceeEeccccccccCChhHHHH--HHHhhhhccccc-chHHHHhhHHHHh------hhhhh
Confidence 998 4666666666678899999999999766544444443 677999999883 3442 233333 78999
Q ss_pred EecCCCCCCC---HHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHh
Q 011710 312 LDLSNLPHLS---DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 388 (479)
Q Consensus 312 L~l~~~~~l~---~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l 388 (479)
|+|++ +.++ .++ .....++++|++|.+.+| .+....-.++. ++++|+.|++.+|. |......++
T Consensus 370 LdLr~-N~ls~~IEDa-a~~f~gl~~LrkL~l~gN-qlk~I~krAfs---------gl~~LE~LdL~~Na-iaSIq~nAF 436 (873)
T KOG4194|consen 370 LDLRS-NELSWCIEDA-AVAFNGLPSLRKLRLTGN-QLKSIPKRAFS---------GLEALEHLDLGDNA-IASIQPNAF 436 (873)
T ss_pred hcCcC-CeEEEEEecc-hhhhccchhhhheeecCc-eeeecchhhhc---------cCcccceecCCCCc-ceeeccccc
Confidence 99988 5654 222 233446899999999998 65554444444 58899999999887 544334444
Q ss_pred hccCCCCccEEEec
Q 011710 389 KKPYFPRLRWLGVT 402 (479)
Q Consensus 389 ~~~~~~~L~~L~l~ 402 (479)
.. + .|++|.+.
T Consensus 437 e~--m-~Lk~Lv~n 447 (873)
T KOG4194|consen 437 EP--M-ELKELVMN 447 (873)
T ss_pred cc--c-hhhhhhhc
Confidence 32 2 66666554
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.2e-17 Score=140.52 Aligned_cols=255 Identities=19% Similarity=0.258 Sum_probs=190.2
Q ss_pred CCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHH-HHhcCCCccEEEccCCCCCCHHHHHH-hhcCCCC
Q 011710 153 MESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD-ISATSLSLTHVCLRWCNLLTNHAIKS-LASNTGI 230 (479)
Q Consensus 153 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L 230 (479)
=+.+++.+ ..+.......+.+ .....+.+.... +.+..+.. +.-.-..|++|+++. ..++...+.. +.+|.+|
T Consensus 138 W~~lDl~~-r~i~p~~l~~l~~--rgV~v~Rlar~~-~~~prlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~kL 212 (419)
T KOG2120|consen 138 WQTLDLTG-RNIHPDVLGRLLS--RGVIVFRLARSF-MDQPRLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSKL 212 (419)
T ss_pred eeeeccCC-CccChhHHHHHHh--CCeEEEEcchhh-hcCchhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHhh
Confidence 35566666 4555554544433 344455543211 11111221 112234689999988 5666655543 5589999
Q ss_pred CEEecCCCCCCChHHHHhhhcCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCc
Q 011710 231 KVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQL 309 (479)
Q Consensus 231 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L 309 (479)
+.|++.+ ..+.+.....++...+|+.|+++.| .++..++..+.. +|..|..|+++.|...++. +..+..... ++|
T Consensus 213 k~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~-scs~L~~LNlsWc~l~~~~-Vtv~V~his-e~l 288 (419)
T KOG2120|consen 213 KNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS-SCSRLDELNLSWCFLFTEK-VTVAVAHIS-ETL 288 (419)
T ss_pred hhccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHHHH-hhhhHhhcCchHhhccchh-hhHHHhhhc-hhh
Confidence 9999988 5788888888888899999999997 788889888888 8999999999999766654 333322212 899
Q ss_pred cEEecCCC-CCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHh
Q 011710 310 QELDLSNL-PHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 388 (479)
Q Consensus 310 ~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l 388 (479)
+.|++++| .++....+..+.+.||+|..|+++.|..+++..+..+.+ ++.|++|.++.|..+....+..+
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k---------f~~L~~lSlsRCY~i~p~~~~~l 359 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK---------FNYLQHLSLSRCYDIIPETLLEL 359 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh---------cchheeeehhhhcCCChHHeeee
Confidence 99999998 345566788888999999999999998899866666664 89999999999998887777676
Q ss_pred hccCCCCccEEEecCCCCHHHHHHHHhcCCCceeeccCc
Q 011710 389 KKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGE 427 (479)
Q Consensus 389 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 427 (479)
.. .|+|.+|++.||......+-+.+..|++++.+...
T Consensus 360 ~s--~psl~yLdv~g~vsdt~mel~~e~~~~lkin~q~~ 396 (419)
T KOG2120|consen 360 NS--KPSLVYLDVFGCVSDTTMELLKEMLSHLKINCQHF 396 (419)
T ss_pred cc--CcceEEEEeccccCchHHHHHHHhCccccccceee
Confidence 55 89999999999999889999999999998877653
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.8e-17 Score=143.37 Aligned_cols=249 Identities=22% Similarity=0.279 Sum_probs=148.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHh-hh-cCCCccEEecccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQ-IN-QHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~-l~-~~~~L~~L~l~~~~~~~~~~~ 135 (479)
-...+.+|+.+..+....+..+.+ .....+.+... .+.+..+.. +. .-..|++|++++
T Consensus 135 e~lW~~lDl~~r~i~p~~l~~l~~--rgV~v~Rlar~---------~~~~prlae~~~~frsRlq~lDLS~--------- 194 (419)
T KOG2120|consen 135 ESLWQTLDLTGRNIHPDVLGRLLS--RGVIVFRLARS---------FMDQPRLAEHFSPFRSRLQHLDLSN--------- 194 (419)
T ss_pred ccceeeeccCCCccChhHHHHHHh--CCeEEEEcchh---------hhcCchhhhhhhhhhhhhHHhhcch---------
Confidence 345678888888888888877764 34455555432 122221221 11 123588888874
Q ss_pred cccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 011710 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 215 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (479)
..++...+..+.+.|++|+.|.+.+ ..+.+.....+ ..-.+|+.|+++.+..++..++..+...|..|.+|++++|..
T Consensus 195 s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 195 SVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred hheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 5777788888888899999999988 67887755555 346788888888888888888888888888888888888866
Q ss_pred CCHHHHHHhh-cCCCCCEEecCCCCC-CChHHHHhhh-cCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCC
Q 011710 216 LTNHAIKSLA-SNTGIKVLDLRDCKN-LGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKR 291 (479)
Q Consensus 216 ~~~~~~~~l~-~~~~L~~L~l~~~~~-l~~~~~~~l~-~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~ 291 (479)
.++..-..++ --++|+.|+++||.. +....+..+. ++|+|..|+|++| .+++..+..+.+ ++.|++|.++.|..
T Consensus 273 ~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k--f~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 273 FTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK--FNYLQHLSLSRCYD 350 (419)
T ss_pred cchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh--cchheeeehhhhcC
Confidence 6555333333 235677777777632 2223333332 4555555555554 444444444444 55555555555554
Q ss_pred CCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCC
Q 011710 292 LTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPI 335 (479)
Q Consensus 292 l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 335 (479)
+.+..+..+. ..|+|.+|++.+| +++..+..+...+++|
T Consensus 351 i~p~~~~~l~---s~psl~yLdv~g~--vsdt~mel~~e~~~~l 389 (419)
T KOG2120|consen 351 IIPETLLELN---SKPSLVYLDVFGC--VSDTTMELLKEMLSHL 389 (419)
T ss_pred CChHHeeeec---cCcceEEEEeccc--cCchHHHHHHHhCccc
Confidence 4444333332 2245555555443 3333333333334443
No 10
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.68 E-value=4.3e-16 Score=138.01 Aligned_cols=256 Identities=23% Similarity=0.306 Sum_probs=161.1
Q ss_pred CCCCCeEEEcCCCccCHHHHHHHHHhC---CCCceEEecCCCC--CCHH------HHHHHHhcCCCccEEEccCCCCCCH
Q 011710 150 CASMESICLGGFCRVTDTGFKTILHSC---SNLYKLRVSHGTQ--LTDL------VFHDISATSLSLTHVCLRWCNLLTN 218 (479)
Q Consensus 150 ~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~~--~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~ 218 (479)
...++.++|++ +.++....+.+...+ ++|+..++++... ..+. .+......+|+|+.|+|+. +-++.
T Consensus 29 ~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD-NA~G~ 106 (382)
T KOG1909|consen 29 MDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD-NAFGP 106 (382)
T ss_pred cCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc-cccCc
Confidence 45566666666 455554444443333 3344434332211 0011 1111222455777777766 45555
Q ss_pred HHHHHh----hcCCCCCEEecCCCCCCChHHHHhh-------------hcCCCCcEEEccCCCCchHHHHHHHh--hcCC
Q 011710 219 HAIKSL----ASNTGIKVLDLRDCKNLGDEALRAI-------------SSLPQLKILLLDGSDISDVGVSYLRL--TVIT 279 (479)
Q Consensus 219 ~~~~~l----~~~~~L~~L~l~~~~~l~~~~~~~l-------------~~l~~L~~L~l~~~~l~~~~l~~l~~--~~~~ 279 (479)
.++..+ .++..|++|.+.+| .++..+-..+ +.-++|+.+....|.+.+.+...+.. ..++
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 444433 36667777777665 4544433221 24578888888888777766544433 1567
Q ss_pred CccEEecCCCCCCCHHHHHHH---hccCCCCCccEEecCCCCCCCHHHHHHHH---hcCCCCcEEecCCCCCCCHHHHHH
Q 011710 280 SLVKLSLRGCKRLTDKCISAL---FDGTSKLQLQELDLSNLPHLSDNGILTLA---TCRVPISELRVRQCPLIGDTSVIA 353 (479)
Q Consensus 280 ~L~~L~l~~~~~l~~~~~~~l---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~ 353 (479)
.|+.+.+.. +.+.+.++..+ +.+| ++|+.|+|.. +.++..+-.+++ ..+++|+.|+++.| .+.+.|..+
T Consensus 186 ~leevr~~q-N~I~~eG~~al~eal~~~--~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a 260 (382)
T KOG1909|consen 186 TLEEVRLSQ-NGIRPEGVTALAEALEHC--PHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIA 260 (382)
T ss_pred ccceEEEec-ccccCchhHHHHHHHHhC--Ccceeeeccc-chhhhHHHHHHHHHhcccchheeeccccc-ccccccHHH
Confidence 888888877 44665555333 3345 8999999998 677766655544 45678999999999 889888888
Q ss_pred HHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhc--cCCCCccEEEecCCCC---HHHHHHHHhcCC
Q 011710 354 LASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSVN---RDILDALARSRP 418 (479)
Q Consensus 354 l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~--~~~~~L~~L~l~~~~~---~~~~~~~~~~~p 418 (479)
+..++.. ..|+|+.|.+.+|. |+..+...+.. +..|.|+.|++.+|.. ...+..++..++
T Consensus 261 ~~~al~~----~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~ 325 (382)
T KOG1909|consen 261 FVDALKE----SAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFD 325 (382)
T ss_pred HHHHHhc----cCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcc
Confidence 8887766 68899999999998 88877665543 2478999999999973 445666665554
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=1.4e-14 Score=137.04 Aligned_cols=259 Identities=23% Similarity=0.219 Sum_probs=173.4
Q ss_pred cccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHH---HHHHhCCCCceEEecCCCCCC-HHHH---HHHHhcCCCccEE
Q 011710 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFK---TILHSCSNLYKLRVSHGTQLT-DLVF---HDISATSLSLTHV 208 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~---~l~~~~~~L~~L~l~~~~~~~-~~~~---~~~~~~~~~L~~L 208 (479)
..+.......+...+++|+.|++++| .+++.+.. ......++|++|+++++.... ...+ ......+++|++|
T Consensus 8 ~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 86 (319)
T cd00116 8 ELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQEL 86 (319)
T ss_pred CcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEE
Confidence 34443334444455677999999985 66554433 334456778999988765321 2222 2233457799999
Q ss_pred EccCCCCCCHHHHHHhhcC---CCCCEEecCCCCCCChHHHH----hhhcC-CCCcEEEccCCCCchHHHHHHHh--hcC
Q 011710 209 CLRWCNLLTNHAIKSLASN---TGIKVLDLRDCKNLGDEALR----AISSL-PQLKILLLDGSDISDVGVSYLRL--TVI 278 (479)
Q Consensus 209 ~l~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~l~~~~~~----~l~~l-~~L~~L~l~~~~l~~~~l~~l~~--~~~ 278 (479)
++++|. +.......+..+ ++|++|++++| .+.+.+.. .+..+ ++|+.|++++|.++..+...+.. ..+
T Consensus 87 ~l~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 164 (319)
T cd00116 87 DLSDNA-LGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN 164 (319)
T ss_pred EccCCC-CChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhC
Confidence 999964 432233333333 55999999996 46654443 33466 89999999999988554433322 146
Q ss_pred CCccEEecCCCCCCCHHHHHHHhccC-CCCCccEEecCCCCCCCHHHHHHH---HhcCCCCcEEecCCCCCCCHHHHHHH
Q 011710 279 TSLVKLSLRGCKRLTDKCISALFDGT-SKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIAL 354 (479)
Q Consensus 279 ~~L~~L~l~~~~~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l 354 (479)
++|++|++++| .+++.++..++... .+++|++|++++| .+++.+...+ ...+++|+.|++++| .+++.++..+
T Consensus 165 ~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l 241 (319)
T cd00116 165 RDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAAL 241 (319)
T ss_pred CCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHH
Confidence 78999999996 46665555443221 2269999999996 7776665543 345789999999999 7888888887
Q ss_pred HhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhc--cCCCCccEEEecCCC
Q 011710 355 ASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV 405 (479)
Q Consensus 355 ~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 405 (479)
+..... ..++|+.|++++|. +++.+...+.. +.+++|+++++++|.
T Consensus 242 ~~~~~~----~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 242 ASALLS----PNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHhc----cCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 763221 24799999999998 87655544432 246899999999987
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=3e-15 Score=162.96 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=63.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
+.+|+.|++..+.+.. +..-...+++|+.|+|+++..+. .++.+..+++|++|++.+| ..
T Consensus 610 ~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~----------~ip~ls~l~~Le~L~L~~c--------~~ 669 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLK----------EIPDLSMATNLETLKLSDC--------SS 669 (1153)
T ss_pred ccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcC----------cCCccccCCcccEEEecCC--------CC
Confidence 4567777777655443 11112356777777777664321 1223455667777777543 11
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW 212 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 212 (479)
+.. +......+++|+.|++++|+.+..... . ..+++|+.|++++|..+... .....+|+.|++++
T Consensus 670 L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~-~--i~l~sL~~L~Lsgc~~L~~~-----p~~~~nL~~L~L~~ 734 (1153)
T PLN03210 670 LVE--LPSSIQYLNKLEDLDMSRCENLEILPT-G--INLKSLYRLNLSGCSRLKSF-----PDISTNISWLDLDE 734 (1153)
T ss_pred ccc--cchhhhccCCCCEEeCCCCCCcCccCC-c--CCCCCCCEEeCCCCCCcccc-----ccccCCcCeeecCC
Confidence 111 111123466677777777655543211 1 14566777777666543221 11234555665555
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.57 E-value=3.3e-17 Score=155.12 Aligned_cols=336 Identities=18% Similarity=0.188 Sum_probs=154.5
Q ss_pred cccchhHHHHHHhhhhccceeeccccchhhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHHHHcCCC
Q 011710 6 LFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVS 85 (479)
Q Consensus 6 ~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 85 (479)
+|+...|..-.+.+. .++.|.+.......++.- ...+.+|++|.+..|.+.. ....+ ..+|.
T Consensus 18 DFsg~~FP~~v~qMt-~~~WLkLnrt~L~~vPeE---------------L~~lqkLEHLs~~HN~L~~-vhGEL-s~Lp~ 79 (1255)
T KOG0444|consen 18 DFSGDRFPHDVEQMT-QMTWLKLNRTKLEQVPEE---------------LSRLQKLEHLSMAHNQLIS-VHGEL-SDLPR 79 (1255)
T ss_pred cCCCCcCchhHHHhh-heeEEEechhhhhhChHH---------------HHHHhhhhhhhhhhhhhHh-hhhhh-ccchh
Confidence 344444444444455 677777664322222221 2335667777666555432 12222 25677
Q ss_pred ccEEeccCCCCCCCccccccchHHHH-hhhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCcc
Q 011710 86 LTHLDLRDAPLIEPRITFDLTNSGLQ-QINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRV 164 (479)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~~~~~~l~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l 164 (479)
|+.+.++.|+ +...+++ .|..+..|+.|++++++ +..++ ..+ ...+++-.|+|++ +++
T Consensus 80 LRsv~~R~N~---------LKnsGiP~diF~l~dLt~lDLShNq------L~EvP-~~L----E~AKn~iVLNLS~-N~I 138 (1255)
T KOG0444|consen 80 LRSVIVRDNN---------LKNSGIPTDIFRLKDLTILDLSHNQ------LREVP-TNL----EYAKNSIVLNLSY-NNI 138 (1255)
T ss_pred hHHHhhhccc---------cccCCCCchhcccccceeeecchhh------hhhcc-hhh----hhhcCcEEEEccc-Ccc
Confidence 7777776653 3333333 45566667777775421 11111 111 2234555566665 344
Q ss_pred CHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChH
Q 011710 165 TDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDE 244 (479)
Q Consensus 165 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~ 244 (479)
... +..+.-++..|-.|+++++.. ..+..-.+.+..|+.|.|++ +.+....+..+..+++|+.|.+++.....+.
T Consensus 139 etI-Pn~lfinLtDLLfLDLS~NrL---e~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N 213 (1255)
T KOG0444|consen 139 ETI-PNSLFINLTDLLFLDLSNNRL---EMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDN 213 (1255)
T ss_pred ccC-CchHHHhhHhHhhhccccchh---hhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhcccccchhhc
Confidence 332 233333445555555554431 11111223334556666665 3333444444445555555555553322222
Q ss_pred HHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCH--HHHHHH-----------------hccCC
Q 011710 245 ALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD--KCISAL-----------------FDGTS 305 (479)
Q Consensus 245 ~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~--~~~~~l-----------------~~~~~ 305 (479)
....+..+.+|..++++.|.+.. ....+.. +++|+.|++++ +.++. .+...+ ...|+
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~--l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcK 289 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLPI-VPECLYK--LRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQLTVLPDAVCK 289 (1255)
T ss_pred CCCchhhhhhhhhccccccCCCc-chHHHhh--hhhhheeccCc-CceeeeeccHHHHhhhhhhccccchhccchHHHhh
Confidence 23333444555555555554431 1112222 45555555555 22331 112222 00012
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHH
Q 011710 306 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF 385 (479)
Q Consensus 306 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~ 385 (479)
+++|+.|.+.+ +.++-+|+..-.-.+.+|+.+...+| .+ ....+.++ +|.+|+.|.++.|..|+-...
T Consensus 290 L~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN-~L-ElVPEglc---------RC~kL~kL~L~~NrLiTLPea 357 (1255)
T KOG0444|consen 290 LTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANN-KL-ELVPEGLC---------RCVKLQKLKLDHNRLITLPEA 357 (1255)
T ss_pred hHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcc-cc-ccCchhhh---------hhHHHHHhcccccceeechhh
Confidence 24444444443 33332222111112333444444443 11 11112222 589999999999987775333
Q ss_pred HHhhccCCCCccEEEecCCC
Q 011710 386 RWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 386 ~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+ .+|.|+.|++..|+
T Consensus 358 IH----lL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 358 IH----LLPDLKVLDLRENP 373 (1255)
T ss_pred hh----hcCCcceeeccCCc
Confidence 33 37899999999987
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.55 E-value=3.5e-14 Score=126.00 Aligned_cols=217 Identities=21% Similarity=0.253 Sum_probs=139.1
Q ss_pred cCCCCCeEEEcCCCccCHHH---HHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhh
Q 011710 149 KCASMESICLGGFCRVTDTG---FKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA 225 (479)
Q Consensus 149 ~~~~L~~L~l~~~~~l~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 225 (479)
.+|+|+.|+||. +.++..+ +..+++.+..|++|.+.+|.. ...+-..+... |.+|.. ....+
T Consensus 90 ~~~~L~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~a---l~~l~~----------~kk~~ 154 (382)
T KOG1909|consen 90 GCPKLQKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRA---LFELAV----------NKKAA 154 (382)
T ss_pred cCCceeEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHH---HHHHHH----------HhccC
Confidence 466777777777 4555443 444556677777777776653 32222222221 111110 11223
Q ss_pred cCCCCCEEecCCCCCCChHHHHh----hhcCCCCcEEEccCCCCchHHHHHHHh--hcCCCccEEecCCCCCCCHHHHHH
Q 011710 226 SNTGIKVLDLRDCKNLGDEALRA----ISSLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISA 299 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~----l~~l~~L~~L~l~~~~l~~~~l~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~ 299 (479)
.-+.|+.+.... +.+.+.+... +...+.|+.+++..|.|...+...+.. ..|++|+.|++.++ .++..+-..
T Consensus 155 ~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~ 232 (382)
T KOG1909|consen 155 SKPKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVA 232 (382)
T ss_pred CCcceEEEEeec-cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHH
Confidence 567788888776 3565554433 336688888888888777766532222 25888888888884 455555444
Q ss_pred Hhcc-CCCCCccEEecCCCCCCCHHHHHH----HHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEc
Q 011710 300 LFDG-TSKLQLQELDLSNLPHLSDNGILT----LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 374 (479)
Q Consensus 300 l~~~-~~~~~L~~L~l~~~~~l~~~~~~~----l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 374 (479)
++.. +.+++|+.|++++| .+...|..+ +....|+|+.|.+.+| .|+..+...++.... ..+.|+.|+|
T Consensus 233 LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~-----ek~dL~kLnL 305 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMA-----EKPDLEKLNL 305 (382)
T ss_pred HHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHh-----cchhhHHhcC
Confidence 4432 34478999999998 666555544 4455689999999999 888777766665444 4688999999
Q ss_pred cCCCCC--CHHHHHHhhc
Q 011710 375 YNCGGI--TQLAFRWLKK 390 (479)
Q Consensus 375 ~~c~~i--~~~~~~~l~~ 390 (479)
++|. + .+.++..+..
T Consensus 306 ngN~-l~e~de~i~ei~~ 322 (382)
T KOG1909|consen 306 NGNR-LGEKDEGIDEIAS 322 (382)
T ss_pred Cccc-ccccchhHHHHHH
Confidence 9998 7 5566766655
No 15
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.48 E-value=2.9e-13 Score=135.86 Aligned_cols=255 Identities=28% Similarity=0.408 Sum_probs=185.1
Q ss_pred ccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCC-CCCCH--HHHHHHHhcCCCccEEEccCC
Q 011710 137 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG-TQLTD--LVFHDISATSLSLTHVCLRWC 213 (479)
Q Consensus 137 ~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~-~~~~~--~~~~~~~~~~~~L~~L~l~~~ 213 (479)
.........+...++.|+.|.+..|..+++.....+...+++|+.|+++++ ..... .....+...+++|+.|++++|
T Consensus 174 ~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 174 LLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred cccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence 444455556666688888888888888887777777788888888888762 22222 223346667788888998888
Q ss_pred CCCCHHHHHHhh-cCCCCCEEecCCCCCCChHHHHhhh-cCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCC--
Q 011710 214 NLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRG-- 288 (479)
Q Consensus 214 ~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~-- 288 (479)
..+++.++..++ .|++|+.|.+.+|..+++.++..+. .+++|++|++++| .+++.++..+.. .+++|+.|.+..
T Consensus 254 ~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~-~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 254 GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK-NCPNLRELKLLSLN 332 (482)
T ss_pred hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH-hCcchhhhhhhhcC
Confidence 778888887777 4888999888888778888887776 6888999999887 556777777766 588877766554
Q ss_pred -CCCCCHHHHHHHhccCCCC-CccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCC
Q 011710 289 -CKRLTDKCISALFDGTSKL-QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYG 366 (479)
Q Consensus 289 -~~~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~ 366 (479)
|..+++.++....... . .+..+.+.+|+.+++..+.... .......+.+.+|+.++ .++..... .+
T Consensus 333 ~c~~l~~~~l~~~~~~~--~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~--------~~ 400 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLT--SDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLC--------RS 400 (482)
T ss_pred CCccHHHHHHHHhhccC--chhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhc--------cC
Confidence 3446666666554333 2 6777777778777777776554 23223367778888887 66766665 45
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 367 SSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 367 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
..++.|+++.|..+++..+..... .+.++..+++.+|.
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~-~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLAD-SCSNLKDLDLSGCR 438 (482)
T ss_pred CccceEecccCccccccchHHHhh-hhhccccCCccCcc
Confidence 559999999999888888877765 37788999999887
No 16
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.47 E-value=3e-13 Score=135.72 Aligned_cols=246 Identities=27% Similarity=0.360 Sum_probs=185.4
Q ss_pred HHHcCCCCCeEEEcCCCc-cCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccC-CCCCCHHH---
Q 011710 146 MADKCASMESICLGGFCR-VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW-CNLLTNHA--- 220 (479)
Q Consensus 146 l~~~~~~L~~L~l~~~~~-l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~--- 220 (479)
+...+..++.+.+..+.. ........+...++.|+.|.+.++..+.+.++..+...++.|+.|++++ |......+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 235 (482)
T KOG1947|consen 156 LSRGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL 235 (482)
T ss_pred HHHHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh
Confidence 334455666666666543 3444456666678999999999999998888888899999999999988 33333333
Q ss_pred HHHhhcCCCCCEEecCCCCCCChHHHHhhh-cCCCCcEEEccCCC-CchHHHHHHHhhcCCCccEEecCCCCCCCHHHHH
Q 011710 221 IKSLASNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSD-ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCIS 298 (479)
Q Consensus 221 ~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~-l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~ 298 (479)
......+++|+.|+++.|..+++.++..++ .+++|+.|.+.+|. +++.++..+.. .++.|++|++++|..+++.++.
T Consensus 236 ~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~-~~~~L~~L~l~~c~~~~d~~l~ 314 (482)
T KOG1947|consen 236 LLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE-RCPSLRELDLSGCHGLTDSGLE 314 (482)
T ss_pred hhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH-hcCcccEEeeecCccchHHHHH
Confidence 222337899999999998779999999888 58999999988886 89999999999 8999999999999999999888
Q ss_pred HHhccCCCCCccEEecCC---CCCCCHHHHHHHHhcCC-CCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEc
Q 011710 299 ALFDGTSKLQLQELDLSN---LPHLSDNGILTLATCRV-PISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 374 (479)
Q Consensus 299 ~l~~~~~~~~L~~L~l~~---~~~l~~~~~~~l~~~~~-~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 374 (479)
.+...| ++|+.|.+.. |..++...+..+..... .+..+.+.+|+.+++..+..... ......+.+
T Consensus 315 ~~~~~c--~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~~~l 383 (482)
T KOG1947|consen 315 ALLKNC--PNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI---------SDLGLELSL 383 (482)
T ss_pred HHHHhC--cchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc---------cCcchHHHh
Confidence 887666 7766665544 44577777766655443 67888888888888777766553 111225777
Q ss_pred cCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 375 YNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 375 ~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+|+.++ ..+..... .+.+++.|+++.|.
T Consensus 384 ~gc~~l~-~~l~~~~~-~~~~l~~L~l~~~~ 412 (482)
T KOG1947|consen 384 RGCPNLT-ESLELRLC-RSDSLRVLNLSDCR 412 (482)
T ss_pred cCCcccc-hHHHHHhc-cCCccceEecccCc
Confidence 8888887 66655554 45569999999987
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.45 E-value=2.7e-15 Score=142.44 Aligned_cols=201 Identities=18% Similarity=0.190 Sum_probs=123.2
Q ss_pred HcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcC
Q 011710 148 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN 227 (479)
Q Consensus 148 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 227 (479)
.++.+|++|.|++ +.+....++++ ..+.+|..|.+++.. -+...+......+.+|..++++. +.++.. ..++-.+
T Consensus 170 RRL~~LqtL~Ls~-NPL~hfQLrQL-PsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~-N~Lp~v-Pecly~l 244 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSN-NPLNHFQLRQL-PSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSE-NNLPIV-PECLYKL 244 (1255)
T ss_pred HHHhhhhhhhcCC-ChhhHHHHhcC-ccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccc-cCCCcc-hHHHhhh
Confidence 3466677777777 45555444443 234556666665433 22222222333455777777776 455433 2345577
Q ss_pred CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC----HHHHHHHhcc
Q 011710 228 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT----DKCISALFDG 303 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~----~~~~~~l~~~ 303 (479)
++|+.|++|++ .++.... ......+|++|+++.|.++. ....+.+ +++|+.|.+.+ +.++ +.|+..+
T Consensus 245 ~~LrrLNLS~N-~iteL~~-~~~~W~~lEtLNlSrNQLt~-LP~avcK--L~kL~kLy~n~-NkL~FeGiPSGIGKL--- 315 (1255)
T KOG0444|consen 245 RNLRRLNLSGN-KITELNM-TEGEWENLETLNLSRNQLTV-LPDAVCK--LTKLTKLYANN-NKLTFEGIPSGIGKL--- 315 (1255)
T ss_pred hhhheeccCcC-ceeeeec-cHHHHhhhhhhccccchhcc-chHHHhh--hHHHHHHHhcc-CcccccCCccchhhh---
Confidence 88888888874 4443221 12234578888888887763 2334444 77888888766 3454 3444445
Q ss_pred CCCCCccEEecCCCCCCC--HHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCC
Q 011710 304 TSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 381 (479)
Q Consensus 304 ~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~ 381 (479)
.+|+.+..++ +.+. ++++. .|+.|+.|.++.|.-|+- +.+++ -++.|+.|++..|+++-
T Consensus 316 ---~~Levf~aan-N~LElVPEglc----RC~kL~kL~L~~NrLiTL------PeaIH-----lL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 316 ---IQLEVFHAAN-NKLELVPEGLC----RCVKLQKLKLDHNRLITL------PEAIH-----LLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ---hhhHHHHhhc-cccccCchhhh----hhHHHHHhcccccceeec------hhhhh-----hcCCcceeeccCCcCcc
Confidence 6788888887 4543 56655 699999999999855542 22222 47889999999998754
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.41 E-value=7e-13 Score=144.68 Aligned_cols=247 Identities=19% Similarity=0.242 Sum_probs=135.9
Q ss_pred hcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHH
Q 011710 114 NQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDL 193 (479)
Q Consensus 114 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 193 (479)
..+++|+.|+++.+.. ...++. + ..+++|+.|++++|..+... ..-+..+++|+.|++++|..+...
T Consensus 631 ~~l~~Lk~L~Ls~~~~-----l~~ip~-----l-s~l~~Le~L~L~~c~~L~~l--p~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKN-----LKEIPD-----L-SMATNLETLKLSDCSSLVEL--PSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred ccCCCCCEEECCCCCC-----cCcCCc-----c-ccCCcccEEEecCCCCcccc--chhhhccCCCCEEeCCCCCCcCcc
Confidence 4567788888764311 112221 1 34678888888887655432 222356788888888877665433
Q ss_pred HHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHH--------------------------
Q 011710 194 VFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALR-------------------------- 247 (479)
Q Consensus 194 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~-------------------------- 247 (479)
+.. ..+++|+.|++++|..+...+. ..++|+.|+++++ .+......
T Consensus 698 p~~---i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n-~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 698 PTG---INLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDET-AIEEFPSNLRLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred CCc---CCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCC-ccccccccccccccccccccccchhhcccccccc
Confidence 221 1466888888888765543221 2356777777664 22211100
Q ss_pred ---hhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHH
Q 011710 248 ---AISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNG 324 (479)
Q Consensus 248 ---~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~ 324 (479)
.....++|+.|++++|.........+. .+++|+.|++++|..+.. +.....+++|++|++++|..+..-
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~--~L~~L~~L~Ls~C~~L~~-----LP~~~~L~sL~~L~Ls~c~~L~~~- 841 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQ--NLHKLEHLEIENCINLET-----LPTGINLESLESLDLSGCSRLRTF- 841 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhh--CCCCCCEEECCCCCCcCe-----eCCCCCccccCEEECCCCCccccc-
Confidence 000124566666665532222122222 366777777777665442 111112366777777776554321
Q ss_pred HHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCC
Q 011710 325 ILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 404 (479)
Q Consensus 325 ~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~ 404 (479)
....++|+.|+++++ .++... ..+ . .+++|+.|++++|++++..... +. .+++|+.+++++|
T Consensus 842 ----p~~~~nL~~L~Ls~n-~i~~iP-~si-~--------~l~~L~~L~L~~C~~L~~l~~~-~~--~L~~L~~L~l~~C 903 (1153)
T PLN03210 842 ----PDISTNISDLNLSRT-GIEEVP-WWI-E--------KFSNLSFLDMNGCNNLQRVSLN-IS--KLKHLETVDFSDC 903 (1153)
T ss_pred ----cccccccCEeECCCC-CCccCh-HHH-h--------cCCCCCEEECCCCCCcCccCcc-cc--cccCCCeeecCCC
Confidence 112356777777776 444321 112 2 5788999999998877753321 11 4788888888888
Q ss_pred CCH
Q 011710 405 VNR 407 (479)
Q Consensus 405 ~~~ 407 (479)
...
T Consensus 904 ~~L 906 (1153)
T PLN03210 904 GAL 906 (1153)
T ss_pred ccc
Confidence 743
No 19
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.26 E-value=2.7e-11 Score=104.10 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=47.9
Q ss_pred CCccEEecCCCCCCCHHHHHHH----HhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCH
Q 011710 307 LQLQELDLSNLPHLSDNGILTL----ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ 382 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l----~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~ 382 (479)
.+|+++.+.. +.|.+.++..+ ...+.+|+.|++..| .++..+-..++.++. .++.|+.|.+..|- ++.
T Consensus 185 ~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~-----~W~~lrEL~lnDCl-ls~ 256 (388)
T COG5238 185 ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALC-----EWNLLRELRLNDCL-LSN 256 (388)
T ss_pred cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhc-----ccchhhhccccchh-hcc
Confidence 4566666665 46665555433 123556666666666 555555555555554 34556666666665 444
Q ss_pred HHHHHhh----ccCCCCccEEEecCC
Q 011710 383 LAFRWLK----KPYFPRLRWLGVTGS 404 (479)
Q Consensus 383 ~~~~~l~----~~~~~~L~~L~l~~~ 404 (479)
.|...+. .-..|+|..|....+
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchh
Confidence 3333222 123556666655544
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=3e-12 Score=127.25 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=21.0
Q ss_pred CCCCcE-EEeecCccChhHHHHHHHcCCCccEEeccCCC
Q 011710 58 LPGIQK-LCLSVDYITDAMVGTISQGLVSLTHLDLRDAP 95 (479)
Q Consensus 58 ~~~L~~-L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 95 (479)
..++++ |+|+.+.+... .+ ..+++|+.|....++
T Consensus 176 i~~l~~~ldLr~N~~~~~---dl-s~~~~l~~l~c~rn~ 210 (1081)
T KOG0618|consen 176 IYNLTHQLDLRYNEMEVL---DL-SNLANLEVLHCERNQ 210 (1081)
T ss_pred hhhhheeeecccchhhhh---hh-hhccchhhhhhhhcc
Confidence 345555 88887766521 22 367778887777663
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.5e-11 Score=112.53 Aligned_cols=208 Identities=17% Similarity=0.173 Sum_probs=131.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHH-HHhhhcCCCccEEeccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSG-LQQINQHGKLKHLSLIRSQEFLITYFR 136 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-l~~l~~~~~L~~L~l~~~~~~~~~~~~ 136 (479)
+.+|+...|.++.+.+......++.||+++.|+|++|-. ..... ...+..+|+|+.|+++.+ .+.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~--------~nw~~v~~i~eqLp~Le~LNls~N------rl~ 185 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLF--------HNWFPVLKIAEQLPSLENLNLSSN------RLS 185 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhH--------HhHHHHHHHHHhcccchhcccccc------ccc
Confidence 788888888888777766656777899999999998731 11112 223347888888888752 111
Q ss_pred ccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCC
Q 011710 137 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 216 (479)
Q Consensus 137 ~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (479)
........ ..+++|+.|.|+.| .++...+..+...+|+|+.|.++++..+...... ......|++|+|++.+.+
T Consensus 186 ~~~~s~~~---~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 186 NFISSNTT---LLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLI 259 (505)
T ss_pred CCccccch---hhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCccc
Confidence 11111111 24677888899887 6777777888888899999888877432111111 122347888888886555
Q ss_pred CHHHHHHhhcCCCCCEEecCCCCCCChHHHHhh------hcCCCCcEEEccCCCCchH-HHHHHHhhcCCCccEEecCC
Q 011710 217 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAI------SSLPQLKILLLDGSDISDV-GVSYLRLTVITSLVKLSLRG 288 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l------~~l~~L~~L~l~~~~l~~~-~l~~l~~~~~~~L~~L~l~~ 288 (479)
+......++.+|.|+.|.++.| .+.+...... ..+++|+.|++..|.+.+. .+..+.. +++|+.|.+..
T Consensus 260 ~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~--l~nlk~l~~~~ 335 (505)
T KOG3207|consen 260 DFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT--LENLKHLRITL 335 (505)
T ss_pred ccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhc--cchhhhhhccc
Confidence 5554555667888888888775 4444332222 3578888888888877442 2333333 66677766654
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.12 E-value=5.5e-12 Score=125.44 Aligned_cols=57 Identities=26% Similarity=0.416 Sum_probs=26.6
Q ss_pred CCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCC
Q 011710 229 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 288 (479)
Q Consensus 229 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~ 288 (479)
.|+.|.+.+ +.+++..+..+.+..+|+.|+|++|.+.......+.+ ++.|+.|+++|
T Consensus 360 ~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k--le~LeeL~LSG 416 (1081)
T KOG0618|consen 360 ALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK--LEELEELNLSG 416 (1081)
T ss_pred HHHHHHHhc-CcccccchhhhccccceeeeeecccccccCCHHHHhc--hHHhHHHhccc
Confidence 344444444 3455555555555555555555555444333333332 44455555555
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.3e-11 Score=111.40 Aligned_cols=160 Identities=19% Similarity=0.156 Sum_probs=78.7
Q ss_pred cCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccC-HHHHHHHHHhCCCCceEEecCCCCCCHH
Q 011710 115 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVT-DTGFKTILHSCSNLYKLRVSHGTQLTDL 193 (479)
Q Consensus 115 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 193 (479)
++.+|+.+.+.+ ..+...+.....+.|++++.|+|+. +-+. -..+..+++.+|+|+.|+++.+......
T Consensus 119 n~kkL~~IsLdn---------~~V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 119 NLKKLREISLDN---------YRVEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred hHHhhhheeecC---------ccccccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence 556666666653 2333333334455677777777776 2222 2234556666777777777665431110
Q ss_pred HHHHHHhcCCCccEEEccCCCCCCHHHH-HHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHH-HH
Q 011710 194 VFHDISATSLSLTHVCLRWCNLLTNHAI-KSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVG-VS 271 (479)
Q Consensus 194 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~-l~ 271 (479)
. .......++|+.|.+++|. ++...+ ..+..+|+|+.|.+..++.+.. .......+..|++|+|++|.+-+.. +.
T Consensus 189 ~-s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~i~~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 189 S-SNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILI-KATSTKILQTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred c-ccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccce-ecchhhhhhHHhhccccCCccccccccc
Confidence 0 0011134566666676663 333333 2333666666666666431111 1111123455666666666443322 22
Q ss_pred HHHhhcCCCccEEecCCC
Q 011710 272 YLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 272 ~l~~~~~~~L~~L~l~~~ 289 (479)
..+ .+|.|..|+++.|
T Consensus 266 ~~~--~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 266 KVG--TLPGLNQLNLSST 281 (505)
T ss_pred ccc--cccchhhhhcccc
Confidence 222 2566666666553
No 24
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.95 E-value=4e-08 Score=84.98 Aligned_cols=202 Identities=21% Similarity=0.203 Sum_probs=113.6
Q ss_pred hCCCCceEEecCCCCCCHHHHHHHH---hcCCCccEEEccCC--CCCCHHH-------HHHhhcCCCCCEEecCCCCCCC
Q 011710 175 SCSNLYKLRVSHGTQLTDLVFHDIS---ATSLSLTHVCLRWC--NLLTNHA-------IKSLASNTGIKVLDLRDCKNLG 242 (479)
Q Consensus 175 ~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~--~~~~~~~-------~~~l~~~~~L~~L~l~~~~~l~ 242 (479)
.+..++.+++++++.-+ .....+. ..-.+|+..+++.. ....+.. +..+..||.|+.+++|++ .++
T Consensus 28 ~~d~~~evdLSGNtigt-EA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg 105 (388)
T COG5238 28 MMDELVEVDLSGNTIGT-EAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFG 105 (388)
T ss_pred hhcceeEEeccCCcccH-HHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccC
Confidence 36778888888776432 2222222 23345555555431 0111111 112235566666666552 333
Q ss_pred hHHHH----hhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhc---cCCCCCccEEecC
Q 011710 243 DEALR----AISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFD---GTSKLQLQELDLS 315 (479)
Q Consensus 243 ~~~~~----~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~~~L~~L~l~ 315 (479)
..... .++.-..|++|.+++|.+...+-..+++ .+..++. ....|.|+++...
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--------------------al~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--------------------ALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--------------------HHHHHHHHhhhccCCCceEEEec
Confidence 32222 2234445555555555444333222222 1111111 1123889999988
Q ss_pred CCCCCCH---HHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhcc-
Q 011710 316 NLPHLSD---NGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKP- 391 (479)
Q Consensus 316 ~~~~l~~---~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~- 391 (479)
. +.+.. .-.....+.-.+|+.+.+..| .|.+.|+..++..... .+++|+.|++..|. ++..+-..++.+
T Consensus 166 r-NRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~----y~~~LevLDlqDNt-ft~~gS~~La~al 238 (388)
T COG5238 166 R-NRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLF----YSHSLEVLDLQDNT-FTLEGSRYLADAL 238 (388)
T ss_pred c-chhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHH----HhCcceeeeccccc-hhhhhHHHHHHHh
Confidence 7 45542 223334443468999999999 8999887766542221 68999999999998 887776666542
Q ss_pred -CCCCccEEEecCCC
Q 011710 392 -YFPRLRWLGVTGSV 405 (479)
Q Consensus 392 -~~~~L~~L~l~~~~ 405 (479)
.++.|+.|.+.+|.
T Consensus 239 ~~W~~lrEL~lnDCl 253 (388)
T COG5238 239 CEWNLLRELRLNDCL 253 (388)
T ss_pred cccchhhhccccchh
Confidence 36789999999997
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.86 E-value=3.6e-09 Score=108.19 Aligned_cols=245 Identities=19% Similarity=0.169 Sum_probs=145.2
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
.++|+.|++..|.++. + ....++|++|++++|. ++. ++. ..++|++|+++. +.
T Consensus 221 ~~~L~~L~L~~N~Lt~--L---P~lp~~Lk~LdLs~N~---------Lts--LP~--lp~sL~~L~Ls~---------N~ 273 (788)
T PRK15387 221 PAHITTLVIPDNNLTS--L---PALPPELRTLEVSGNQ---------LTS--LPV--LPPGLLELSIFS---------NP 273 (788)
T ss_pred hcCCCEEEccCCcCCC--C---CCCCCCCcEEEecCCc---------cCc--ccC--cccccceeeccC---------Cc
Confidence 3578888888777664 2 1246789999998874 221 111 135788888853 22
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+. .+....++|+.|++++ +.+... . ...++|+.|++++|.. ... .....+|+.|.+++| .++
T Consensus 274 L~-----~Lp~lp~~L~~L~Ls~-N~Lt~L--P---~~p~~L~~LdLS~N~L-~~L-----p~lp~~L~~L~Ls~N-~L~ 335 (788)
T PRK15387 274 LT-----HLPALPSGLCKLWIFG-NQLTSL--P---VLPPGLQELSVSDNQL-ASL-----PALPSELCKLWAYNN-QLT 335 (788)
T ss_pred hh-----hhhhchhhcCEEECcC-Cccccc--c---ccccccceeECCCCcc-ccC-----CCCcccccccccccC-ccc
Confidence 21 1222345788888888 455532 1 2346889999887643 221 112346778888774 444
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011710 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 297 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~ 297 (479)
..+ . ..++|+.|++++| .+.... . ..++|+.|++++|.++. ++ . ..++|+.|+++++. ++. +
T Consensus 336 ~LP--~--lp~~Lq~LdLS~N-~Ls~LP--~--lp~~L~~L~Ls~N~L~~--LP---~-l~~~L~~LdLs~N~-Lt~--L 397 (788)
T PRK15387 336 SLP--T--LPSGLQELSVSDN-QLASLP--T--LPSELYKLWAYNNRLTS--LP---A-LPSGLKELIVSGNR-LTS--L 397 (788)
T ss_pred ccc--c--cccccceEecCCC-ccCCCC--C--CCcccceehhhcccccc--Cc---c-cccccceEEecCCc-ccC--C
Confidence 221 1 1247889999884 554321 1 13578888888887763 22 2 24578888888743 431 1
Q ss_pred HHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCC
Q 011710 298 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 377 (479)
Q Consensus 298 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 377 (479)
... .++|+.|+++++ .++... ....+|+.|++++| .++.. ...+. .+++|+.|++++|
T Consensus 398 P~l-----~s~L~~LdLS~N-~LssIP-----~l~~~L~~L~Ls~N-qLt~L-P~sl~---------~L~~L~~LdLs~N 455 (788)
T PRK15387 398 PVL-----PSELKELMVSGN-RLTSLP-----MLPSGLLSLSVYRN-QLTRL-PESLI---------HLSSETTVNLEGN 455 (788)
T ss_pred CCc-----ccCCCEEEccCC-cCCCCC-----cchhhhhhhhhccC-ccccc-ChHHh---------hccCCCeEECCCC
Confidence 111 167888999884 555211 11346788888888 56532 11222 4778899999988
Q ss_pred CCCCHHHHHHh
Q 011710 378 GGITQLAFRWL 388 (479)
Q Consensus 378 ~~i~~~~~~~l 388 (479)
+ ++...+..+
T Consensus 456 ~-Ls~~~~~~L 465 (788)
T PRK15387 456 P-LSERTLQAL 465 (788)
T ss_pred C-CCchHHHHH
Confidence 8 776655544
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.85 E-value=5.4e-09 Score=106.91 Aligned_cols=264 Identities=20% Similarity=0.168 Sum_probs=163.8
Q ss_pred CCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccccccccccccccc
Q 011710 59 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRV 138 (479)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 138 (479)
..-..|+++.+.++. ....+ .++|+.|.+.+|. ++. ++. ..++|++|+++++ .+..+
T Consensus 201 ~~~~~LdLs~~~Lts-LP~~l---~~~L~~L~L~~N~---------Lt~--LP~--lp~~Lk~LdLs~N------~LtsL 257 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPDCL---PAHITTLVIPDNN---------LTS--LPA--LPPELRTLEVSGN------QLTSL 257 (788)
T ss_pred CCCcEEEcCCCCCCc-CCcch---hcCCCEEEccCCc---------CCC--CCC--CCCCCcEEEecCC------ccCcc
Confidence 346678888776653 22222 3589999999874 222 221 2578999999752 12222
Q ss_pred chHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCH
Q 011710 139 NDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN 218 (479)
Q Consensus 139 ~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 218 (479)
+ ...++|+.|+++++ .+... . ....+|+.|++++|. ++.. ....++|+.|+++++ .+..
T Consensus 258 P--------~lp~sL~~L~Ls~N-~L~~L--p---~lp~~L~~L~Ls~N~-Lt~L-----P~~p~~L~~LdLS~N-~L~~ 316 (788)
T PRK15387 258 P--------VLPPGLLELSIFSN-PLTHL--P---ALPSGLCKLWIFGNQ-LTSL-----PVLPPGLQELSVSDN-QLAS 316 (788)
T ss_pred c--------CcccccceeeccCC-chhhh--h---hchhhcCEEECcCCc-cccc-----cccccccceeECCCC-cccc
Confidence 2 12468999999984 55432 2 234678999998875 3321 123468999999984 5553
Q ss_pred HHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHH
Q 011710 219 HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCIS 298 (479)
Q Consensus 219 ~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~ 298 (479)
.+ . ...+|+.|.+++| .++..+ . ..++|+.|++++|.++.. + . ..++|+.|.++++ .++. +.
T Consensus 317 Lp--~--lp~~L~~L~Ls~N-~L~~LP--~--lp~~Lq~LdLS~N~Ls~L--P---~-lp~~L~~L~Ls~N-~L~~--LP 378 (788)
T PRK15387 317 LP--A--LPSELCKLWAYNN-QLTSLP--T--LPSGLQELSVSDNQLASL--P---T-LPSELYKLWAYNN-RLTS--LP 378 (788)
T ss_pred CC--C--CcccccccccccC-cccccc--c--cccccceEecCCCccCCC--C---C-CCcccceehhhcc-cccc--Cc
Confidence 21 1 2346888888875 454311 1 124799999999988742 2 1 2457888888774 3442 11
Q ss_pred HHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCC
Q 011710 299 ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 299 ~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 378 (479)
.. . .+|+.|++++ +.++... ...++|+.|++++| .++. +.. ...+|+.|++++|.
T Consensus 379 ~l---~--~~L~~LdLs~-N~Lt~LP-----~l~s~L~~LdLS~N-~Lss-----IP~--------l~~~L~~L~Ls~Nq 433 (788)
T PRK15387 379 AL---P--SGLKELIVSG-NRLTSLP-----VLPSELKELMVSGN-RLTS-----LPM--------LPSGLLSLSVYRNQ 433 (788)
T ss_pred cc---c--cccceEEecC-CcccCCC-----CcccCCCEEEccCC-cCCC-----CCc--------chhhhhhhhhccCc
Confidence 11 1 5799999998 4665211 12468999999999 5552 222 23468889999988
Q ss_pred CCCHHHHHHhhccCCCCccEEEecCCC-CHHHHHHH
Q 011710 379 GITQLAFRWLKKPYFPRLRWLGVTGSV-NRDILDAL 413 (479)
Q Consensus 379 ~i~~~~~~~l~~~~~~~L~~L~l~~~~-~~~~~~~~ 413 (479)
++..+ ..+. .+++|+.|++++|+ .......+
T Consensus 434 -Lt~LP-~sl~--~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 434 -LTRLP-ESLI--HLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred -ccccC-hHHh--hccCCCeEECCCCCCCchHHHHH
Confidence 66432 2333 38899999999998 33333333
No 27
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=4.2e-09 Score=92.05 Aligned_cols=233 Identities=19% Similarity=0.134 Sum_probs=132.7
Q ss_pred CCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHh-hcCCCCC
Q 011710 153 MESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSL-ASNTGIK 231 (479)
Q Consensus 153 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~ 231 (479)
++-|.+.+|.--+...+..+...+..+++|++.++..-....+..+...+|.|+.|+++. +.+.. .+..+ ....+|+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~s-~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLSS-DIKSLPLPLKNLR 124 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCCC-ccccCcccccceE
Confidence 444555554222222344555666777777777766555666667777777777777776 33332 12223 2556777
Q ss_pred EEecCCCCCCChHHHHh-hhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCcc
Q 011710 232 VLDLRDCKNLGDEALRA-ISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQ 310 (479)
Q Consensus 232 ~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~ 310 (479)
.|.+.+ ..+....... +..+|.+++|+++.|.+. .+.+ .++....+. +.++
T Consensus 125 ~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~r----------------q~n~------Dd~c~e~~s-----~~v~ 176 (418)
T KOG2982|consen 125 VLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLR----------------QLNL------DDNCIEDWS-----TEVL 176 (418)
T ss_pred EEEEcC-CCCChhhhhhhhhcchhhhhhhhccchhh----------------hhcc------ccccccccc-----hhhh
Confidence 777766 3454443333 235666677666655221 1111 111222221 4667
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhc
Q 011710 311 ELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK 390 (479)
Q Consensus 311 ~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~ 390 (479)
+|++..|....+..+..+.+.+|++..+.+..|| +.+...+.-.. .+|.+-.|+++.++--+..++..+..
T Consensus 177 tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se--------~~p~~~~LnL~~~~idswasvD~Ln~ 247 (418)
T KOG2982|consen 177 TLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSE--------PFPSLSCLNLGANNIDSWASVDALNG 247 (418)
T ss_pred hhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCC--------CCCcchhhhhcccccccHHHHHHHcC
Confidence 7777776555555666677777888888887774 33333333333 46667777777777444566777765
Q ss_pred cCCCCccEEEecCCCCHHHHHH------HHhcCCCceeeccC
Q 011710 391 PYFPRLRWLGVTGSVNRDILDA------LARSRPFLNVACRG 426 (479)
Q Consensus 391 ~~~~~L~~L~l~~~~~~~~~~~------~~~~~p~l~~~~~~ 426 (479)
+|.|..|.+.+++..+.++- +..+.|++++...+
T Consensus 248 --f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 248 --FPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred --CchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 88888888888874333222 22345666665554
No 28
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.75 E-value=4.8e-08 Score=99.55 Aligned_cols=214 Identities=19% Similarity=0.180 Sum_probs=147.9
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccc--cchH-HHHhh-h--cCCCccEEecccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFD--LTNS-GLQQI-N--QHGKLKHLSLIRSQEFL 131 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~-~l~~l-~--~~~~L~~L~l~~~~~~~ 131 (479)
.-++...++.+.......+..+.+ ..|++|.+.+......+.... +... .+..+ . .-.+|++|++++
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G----- 131 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISG----- 131 (699)
T ss_pred hheeEEeeccceecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccc-----
Confidence 346777777777777776766653 339999988765443332221 1110 11111 1 446899999954
Q ss_pred cccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcc
Q 011710 132 ITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLR 211 (479)
Q Consensus 132 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 211 (479)
...+...+...+...+|+|++|.+.+ ..+....+..+...+|+|..|++++..--.-.+ ...+++|+.|.+.
T Consensus 132 ---~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G----IS~LknLq~L~mr 203 (699)
T KOG3665|consen 132 ---SELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTNISNLSG----ISRLKNLQVLSMR 203 (699)
T ss_pred ---cchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCCccCcHH----HhccccHHHHhcc
Confidence 45667777888888999999999999 455555588888999999999999866332222 3466789999888
Q ss_pred CCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHH-----HHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEec
Q 011710 212 WCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEA-----LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSL 286 (479)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~-----~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l 286 (479)
+-...+...+..+..+++|+.||+|......... ++.-..+|+|+.|+.+++.++...+..+.. ..|+|+.+..
T Consensus 204 nLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~-sH~~L~~i~~ 282 (699)
T KOG3665|consen 204 NLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN-SHPNLQQIAA 282 (699)
T ss_pred CCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH-hCccHhhhhh
Confidence 8544444667778899999999999744333321 111226899999999999999888888877 6777776665
Q ss_pred C
Q 011710 287 R 287 (479)
Q Consensus 287 ~ 287 (479)
-
T Consensus 283 ~ 283 (699)
T KOG3665|consen 283 L 283 (699)
T ss_pred h
Confidence 4
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.74 E-value=8e-08 Score=97.97 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=91.5
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCc
Q 011710 177 SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 256 (479)
Q Consensus 177 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 256 (479)
.+|++|+++|...+.......+...+|+|++|.+++-....+.......++|+|..|+||++ ++++. ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccHH
Confidence 46777777766555555555666677777777777632223332233346777777777774 44433 4556667777
Q ss_pred EEEccCCCCch-HHHHHHHhhcCCCccEEecCCCCCCCHH-HHH-HHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCC
Q 011710 257 ILLLDGSDISD-VGVSYLRLTVITSLVKLSLRGCKRLTDK-CIS-ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 333 (479)
Q Consensus 257 ~L~l~~~~l~~-~~l~~l~~~~~~~L~~L~l~~~~~l~~~-~~~-~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 333 (479)
.|.+.+-.+.. ..+..+.. +.+|+.|+++.-...... .+. .+.-+..+|.|+.||.|+ +.++...+..+...-|
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~--L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFN--LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHP 275 (699)
T ss_pred HHhccCCCCCchhhHHHHhc--ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCc
Confidence 77666655544 34455555 777777777764433322 111 122222347777777777 5666666666655556
Q ss_pred CCcEEecC
Q 011710 334 PISELRVR 341 (479)
Q Consensus 334 ~L~~L~l~ 341 (479)
+|+.+.+-
T Consensus 276 ~L~~i~~~ 283 (699)
T KOG3665|consen 276 NLQQIAAL 283 (699)
T ss_pred cHhhhhhh
Confidence 66555543
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.66 E-value=2e-09 Score=97.64 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=80.5
Q ss_pred ccchhHHHHHHhhhhccceeeccccchhhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHHHHcCCCc
Q 011710 7 FLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSL 86 (479)
Q Consensus 7 ~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 86 (479)
.....+..++..+|++...+.+.......++.- ....+++||+|+|+.|.|+.....++. .+++|
T Consensus 53 Cr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~--------------aF~~l~~LRrLdLS~N~Is~I~p~AF~-GL~~l 117 (498)
T KOG4237|consen 53 CRGKGLTEVPANLPPETVEIRLDQNQISSIPPG--------------AFKTLHRLRRLDLSKNNISFIAPDAFK-GLASL 117 (498)
T ss_pred ccCCCcccCcccCCCcceEEEeccCCcccCChh--------------hccchhhhceecccccchhhcChHhhh-hhHhh
Confidence 345567777888887777777763221111111 024478999999999888887666664 78888
Q ss_pred cEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccCH
Q 011710 87 THLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTD 166 (479)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~ 166 (479)
.+|.+.+++ +|++..-..+..+..|+.|.+..+ .+.-+....+ +.+++|..|.+.. +.+..
T Consensus 118 ~~Lvlyg~N--------kI~~l~k~~F~gL~slqrLllNan------~i~Cir~~al----~dL~~l~lLslyD-n~~q~ 178 (498)
T KOG4237|consen 118 LSLVLYGNN--------KITDLPKGAFGGLSSLQRLLLNAN------HINCIRQDAL----RDLPSLSLLSLYD-NKIQS 178 (498)
T ss_pred hHHHhhcCC--------chhhhhhhHhhhHHHHHHHhcChh------hhcchhHHHH----HHhhhcchhcccc-hhhhh
Confidence 888888854 244433334455556666666431 1222222222 3455666666655 22221
Q ss_pred HHHHHHHHhCCCCceEEecCCC
Q 011710 167 TGFKTILHSCSNLYKLRVSHGT 188 (479)
Q Consensus 167 ~~~~~l~~~~~~L~~L~l~~~~ 188 (479)
. ...-++.+..++.+.+..+.
T Consensus 179 i-~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 179 I-CKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred h-ccccccchhccchHhhhcCc
Confidence 1 11112334455555554444
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.56 E-value=3.7e-07 Score=94.13 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=19.8
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCC
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAP 95 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 95 (479)
.++|+.|+|++|.+.. ++.- .+++|++|++++|.
T Consensus 198 p~~L~~L~Ls~N~Lts--LP~~--l~~nL~~L~Ls~N~ 231 (754)
T PRK15370 198 PEQITTLILDNNELKS--LPEN--LQGNIKTLYANSNQ 231 (754)
T ss_pred ccCCcEEEecCCCCCc--CChh--hccCCCEEECCCCc
Confidence 3467777777666653 2111 23577777777663
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.54 E-value=3.4e-07 Score=94.44 Aligned_cols=205 Identities=14% Similarity=0.144 Sum_probs=97.9
Q ss_pred CCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCC
Q 011710 151 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 230 (479)
Q Consensus 151 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 230 (479)
++|+.|+++++ .+... ...+ .++|+.|++++|.. ...+.. + ..+|+.|++++ +.+...+- . -.++|
T Consensus 220 ~nL~~L~Ls~N-~LtsL-P~~l---~~~L~~L~Ls~N~L-~~LP~~-l---~s~L~~L~Ls~-N~L~~LP~-~--l~~sL 285 (754)
T PRK15370 220 GNIKTLYANSN-QLTSI-PATL---PDTIQEMELSINRI-TELPER-L---PSALQSLDLFH-NKISCLPE-N--LPEEL 285 (754)
T ss_pred cCCCEEECCCC-ccccC-Chhh---hccccEEECcCCcc-CcCChh-H---hCCCCEEECcC-CccCcccc-c--cCCCC
Confidence 45666666663 44422 1111 23566666666542 211111 1 13567777765 34442211 1 12467
Q ss_pred CEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCcc
Q 011710 231 KVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQ 310 (479)
Q Consensus 231 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~ 310 (479)
+.|++++| .++.... .+ .++|+.|++++|.++..... ..++|+.|.+++|. ++... ..+ .++|+
T Consensus 286 ~~L~Ls~N-~Lt~LP~-~l--p~sL~~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~-Lt~LP-~~l-----~~sL~ 349 (754)
T PRK15370 286 RYLSVYDN-SIRTLPA-HL--PSGITHLNVQSNSLTALPET-----LPPGLKTLEAGENA-LTSLP-ASL-----PPELQ 349 (754)
T ss_pred cEEECCCC-ccccCcc-cc--hhhHHHHHhcCCccccCCcc-----ccccceeccccCCc-cccCC-hhh-----cCccc
Confidence 77777764 3432110 01 13566677777665531110 23567777776653 32110 011 15677
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHH--HHHHh
Q 011710 311 ELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL--AFRWL 388 (479)
Q Consensus 311 ~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~--~~~~l 388 (479)
.|++++| .++.... . ..++|+.|++++| .++... ..+ .+.|+.|++++|. ++.. .+..+
T Consensus 350 ~L~Ls~N-~L~~LP~-~---lp~~L~~LdLs~N-~Lt~LP-~~l-----------~~sL~~LdLs~N~-L~~LP~sl~~~ 410 (754)
T PRK15370 350 VLDVSKN-QITVLPE-T---LPPTITTLDVSRN-ALTNLP-ENL-----------PAALQIMQASRNN-LVRLPESLPHF 410 (754)
T ss_pred EEECCCC-CCCcCCh-h---hcCCcCEEECCCC-cCCCCC-HhH-----------HHHHHHHhhccCC-cccCchhHHHH
Confidence 7777774 4442111 1 1256777777777 444211 111 1246777777766 4421 22222
Q ss_pred hccCCCCccEEEecCCC
Q 011710 389 KKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 389 ~~~~~~~L~~L~l~~~~ 405 (479)
.. .+|++..|++.+|+
T Consensus 411 ~~-~~~~l~~L~L~~Np 426 (754)
T PRK15370 411 RG-EGPQPTRIIVEYNP 426 (754)
T ss_pred hh-cCCCccEEEeeCCC
Confidence 22 35677777777776
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.53 E-value=1.2e-08 Score=92.73 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=48.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHH
Q 011710 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 386 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~ 386 (479)
++|+.|++++ +.++...-.++ .....++.|.+..| ++. .+....++ .+..|+.|++.+|+ |+-....
T Consensus 274 ~~L~~lnlsn-N~i~~i~~~aF-e~~a~l~eL~L~~N-~l~-----~v~~~~f~----~ls~L~tL~L~~N~-it~~~~~ 340 (498)
T KOG4237|consen 274 PNLRKLNLSN-NKITRIEDGAF-EGAAELQELYLTRN-KLE-----FVSSGMFQ----GLSGLKTLSLYDNQ-ITTVAPG 340 (498)
T ss_pred ccceEeccCC-Cccchhhhhhh-cchhhhhhhhcCcc-hHH-----HHHHHhhh----ccccceeeeecCCe-eEEEecc
Confidence 7777777777 56653322222 24566777777766 332 22222222 57778888888887 6654444
Q ss_pred HhhccCCCCccEEEecCCC
Q 011710 387 WLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 387 ~l~~~~~~~L~~L~l~~~~ 405 (479)
.+.. ..+|..|.+-.|+
T Consensus 341 aF~~--~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 341 AFQT--LFSLSTLNLLSNP 357 (498)
T ss_pred cccc--cceeeeeehccCc
Confidence 4432 5677777776554
No 34
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.45 E-value=1.9e-08 Score=91.63 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=25.1
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 366 GSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 366 ~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
+.+|.+|++.+|. +.. +..... .|.+|++|.+.||+
T Consensus 504 m~nL~tLDL~nNd-lq~--IPp~Lg-nmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 504 MRNLTTLDLQNND-LQQ--IPPILG-NMTNLRHLELDGNP 539 (565)
T ss_pred hhhcceeccCCCc-hhh--CChhhc-cccceeEEEecCCc
Confidence 5668899998887 322 222222 58899999999987
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.42 E-value=2.7e-08 Score=83.22 Aligned_cols=128 Identities=25% Similarity=0.293 Sum_probs=36.5
Q ss_pred CCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcC
Q 011710 254 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR 332 (479)
Q Consensus 254 ~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 332 (479)
++++|+|.++.|+. +..+.. .+.+|+.|+++++. ++ -+++..+ ++|++|++++ +.++..+- .+...+
T Consensus 20 ~~~~L~L~~n~I~~--Ie~L~~-~l~~L~~L~Ls~N~-I~~l~~l~~L------~~L~~L~L~~-N~I~~i~~-~l~~~l 87 (175)
T PF14580_consen 20 KLRELNLRGNQIST--IENLGA-TLDKLEVLDLSNNQ-ITKLEGLPGL------PRLKTLDLSN-NRISSISE-GLDKNL 87 (175)
T ss_dssp ------------------S--T-T-TT--EEE-TTS---S--TT----------TT--EEE--S-S---S-CH-HHHHH-
T ss_pred cccccccccccccc--ccchhh-hhcCCCEEECCCCC-CccccCccCh------hhhhhcccCC-CCCCcccc-chHHhC
Confidence 34555555554432 112221 24455555555532 22 2233333 6677777766 45553321 122346
Q ss_pred CCCcEEecCCCCCCCHHH-HHHHHhccccCCCcCCCCceEEEccCCCCCCH-HHHHHhhccCCCCccEEEecCC
Q 011710 333 VPISELRVRQCPLIGDTS-VIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAFRWLKKPYFPRLRWLGVTGS 404 (479)
Q Consensus 333 ~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~-~~~~~l~~~~~~~L~~L~l~~~ 404 (479)
|+|+.|.+++| .|.+.. +..+. .+++|+.|++.+|+ ++. ...+.+.-..+|+|+.||-...
T Consensus 88 p~L~~L~L~~N-~I~~l~~l~~L~---------~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 88 PNLQELYLSNN-KISDLNELEPLS---------SLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT--EEE-TTS----SCCCCGGGG---------G-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCEEECcCC-cCCChHHhHHHH---------cCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 77777777766 443321 22222 46777777777776 442 2222222224777777765544
No 36
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.40 E-value=3.5e-08 Score=89.98 Aligned_cols=109 Identities=18% Similarity=0.236 Sum_probs=65.5
Q ss_pred HhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhccCCCCCccEEecCCCCCCC---H
Q 011710 247 RAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDGTSKLQLQELDLSNLPHLS---D 322 (479)
Q Consensus 247 ~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~~~L~~L~l~~~~~l~---~ 322 (479)
..++.+++|..|++++|.+.+.... ++ ++..|+.|+++.+..-. +..+..+ ..++.+-.++ +++. .
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln~LP~e-~~--~lv~Lq~LnlS~NrFr~lP~~~y~l------q~lEtllas~-nqi~~vd~ 498 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLNDLPEE-MG--SLVRLQTLNLSFNRFRMLPECLYEL------QTLETLLASN-NQIGSVDP 498 (565)
T ss_pred HHHHhhhcceeeecccchhhhcchh-hh--hhhhhheecccccccccchHHHhhH------HHHHHHHhcc-ccccccCh
Confidence 3455778888888888765543222 22 25668888888742211 2222222 3344444444 4544 3
Q ss_pred HHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCC
Q 011710 323 NGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 381 (479)
Q Consensus 323 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~ 381 (479)
.++. .+.+|..|++.+| .+. .+..+.. .+.+|++|.+++|+ +.
T Consensus 499 ~~l~----nm~nL~tLDL~nN-dlq--~IPp~Lg--------nmtnL~hLeL~gNp-fr 541 (565)
T KOG0472|consen 499 SGLK----NMRNLTTLDLQNN-DLQ--QIPPILG--------NMTNLRHLELDGNP-FR 541 (565)
T ss_pred HHhh----hhhhcceeccCCC-chh--hCChhhc--------cccceeEEEecCCc-cC
Confidence 3343 6788999999888 332 2333333 79999999999998 54
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.27 E-value=5.7e-07 Score=75.27 Aligned_cols=40 Identities=30% Similarity=0.577 Sum_probs=13.7
Q ss_pred cCCCCCEEecCCCCCCCh-HHHHhhhcCCCCcEEEccCCCCc
Q 011710 226 SNTGIKVLDLRDCKNLGD-EALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
.+|+|++|.++++ .+.+ ..+..++.+++|+.|++.+|.++
T Consensus 86 ~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 86 NLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCccc
Confidence 3555555555542 3322 12344445566666666665444
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=7.8e-07 Score=78.25 Aligned_cols=145 Identities=23% Similarity=0.198 Sum_probs=94.5
Q ss_pred cCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 011710 251 SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 330 (479)
Q Consensus 251 ~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 330 (479)
....|+++++++|.|+... .-.+ -.|.++.|+++.+.-..-..+..+ ++|+.|++++ +.++... ..-.
T Consensus 282 TWq~LtelDLS~N~I~~iD--ESvK-L~Pkir~L~lS~N~i~~v~nLa~L------~~L~~LDLS~-N~Ls~~~--Gwh~ 349 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQID--ESVK-LAPKLRRLILSQNRIRTVQNLAEL------PQLQLLDLSG-NLLAECV--GWHL 349 (490)
T ss_pred hHhhhhhccccccchhhhh--hhhh-hccceeEEeccccceeeehhhhhc------ccceEeeccc-chhHhhh--hhHh
Confidence 3467899999999765322 1222 478899999998543334445555 8999999998 4554321 1122
Q ss_pred cCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCH-HHHHHhhccCCCCccEEEecCCC----
Q 011710 331 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAFRWLKKPYFPRLRWLGVTGSV---- 405 (479)
Q Consensus 331 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~-~~~~~l~~~~~~~L~~L~l~~~~---- 405 (479)
.+-+++.|.+.+| .+.+ +..+. .+-+|..|++++|+ |.. ..+..+- .+|.|+.+.+.+|+
T Consensus 350 KLGNIKtL~La~N-~iE~--LSGL~---------KLYSLvnLDl~~N~-Ie~ldeV~~IG--~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 350 KLGNIKTLKLAQN-KIET--LSGLR---------KLYSLVNLDLSSNQ-IEELDEVNHIG--NLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhcCEeeeehhhh-hHhh--hhhhH---------hhhhheeccccccc-hhhHHHhcccc--cccHHHHHhhcCCCcccc
Confidence 4678999999988 4332 22222 24569999999998 443 4445554 49999999999998
Q ss_pred ---CHHHHHHHHhcCCCcee
Q 011710 406 ---NRDILDALARSRPFLNV 422 (479)
Q Consensus 406 ---~~~~~~~~~~~~p~l~~ 422 (479)
..+.++.+.++...+..
T Consensus 415 vdYRTKVLa~FGERaSE~~L 434 (490)
T KOG1259|consen 415 VDYRTKVLARFGERASEISL 434 (490)
T ss_pred chHHHHHHHHHhhhhhheec
Confidence 34455566655554443
No 39
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=1.9e-06 Score=71.61 Aligned_cols=103 Identities=23% Similarity=0.322 Sum_probs=57.1
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHH
Q 011710 308 QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRW 387 (479)
Q Consensus 308 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~ 387 (479)
.++.++-+++ .|..+|+..+. .++.++.|.+.+|..+.|.++..+.. ..++|+.|+|++|+.||+.++..
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~--------~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGG--------LAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcc--------cccchheeeccCCCeechhHHHH
Confidence 3455555552 55555555443 35556666666666666666666655 45566666666666666666666
Q ss_pred hhccCCCCccEEEecCCC---CHH-HHHHHHhcCCCcee
Q 011710 388 LKKPYFPRLRWLGVTGSV---NRD-ILDALARSRPFLNV 422 (479)
Q Consensus 388 l~~~~~~~L~~L~l~~~~---~~~-~~~~~~~~~p~l~~ 422 (479)
+.+ +++|+.|.+.+-+ ..+ ....+....|+..+
T Consensus 172 L~~--lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I 208 (221)
T KOG3864|consen 172 LLK--LKNLRRLHLYDLPYVANLELVQRQLEEALPKCDI 208 (221)
T ss_pred HHH--hhhhHHHHhcCchhhhchHHHHHHHHHhCcccce
Confidence 654 6666666665544 222 23334445565554
No 40
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=2.8e-06 Score=70.70 Aligned_cols=89 Identities=29% Similarity=0.437 Sum_probs=64.7
Q ss_pred CCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCC
Q 011710 254 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 333 (479)
Q Consensus 254 ~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 333 (479)
.++.++-+++.|...|+.++.. ++.++.|.+..|..+.+.++..+... .++|+.|+|++|+.|++.++..+.+ ++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~~--~~~L~~L~lsgC~rIT~~GL~~L~~-lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD--LRSIKSLSLANCKYFDDWCLERLGGL--APSLQDLDLSGCPRITDGGLACLLK-LK 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc--cchhhhheeccccchhhHHHHHhccc--ccchheeeccCCCeechhHHHHHHH-hh
Confidence 4566777777777788887776 77788888888877777777777653 3777777777777777777776664 77
Q ss_pred CCcEEecCCCCCCC
Q 011710 334 PISELRVRQCPLIG 347 (479)
Q Consensus 334 ~L~~L~l~~~~~l~ 347 (479)
+|+.|.+.+-+.+.
T Consensus 177 nLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVA 190 (221)
T ss_pred hhHHHHhcCchhhh
Confidence 77777776655443
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=5.6e-06 Score=72.93 Aligned_cols=195 Identities=16% Similarity=0.142 Sum_probs=118.8
Q ss_pred hHHHHHHHHcCCCCCeEEEcCCCccCHH-HHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCH
Q 011710 140 DLGILLMADKCASMESICLGGFCRVTDT-GFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN 218 (479)
Q Consensus 140 ~~~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 218 (479)
...+..+...++.++.++|.+ +.+++. .+..+.+++|.|+.|+++.+..-++. ........+|+.|.+.+ ..+.-
T Consensus 60 ~gd~~~~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~nl~~lVLNg-T~L~w 135 (418)
T KOG2982|consen 60 EGDVMLFGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLKNLRVLVLNG-TGLSW 135 (418)
T ss_pred chhHHHHHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCcccccceEEEEEcC-CCCCh
Confidence 344566778889999999999 566643 46778899999999999877643322 11112345899999988 45544
Q ss_pred HHHHH-hhcCCCCCEEecCCCCCCChHHH--Hhhh-cCCCCcEEEccCCCCch-HHHHHHHhhcCCCccEEecCCCCCCC
Q 011710 219 HAIKS-LASNTGIKVLDLRDCKNLGDEAL--RAIS-SLPQLKILLLDGSDISD-VGVSYLRLTVITSLVKLSLRGCKRLT 293 (479)
Q Consensus 219 ~~~~~-l~~~~~L~~L~l~~~~~l~~~~~--~~l~-~l~~L~~L~l~~~~l~~-~~l~~l~~~~~~~L~~L~l~~~~~l~ 293 (479)
..... +..+|.++.|.++.+ .+..... .... --+.+++|++..|.... .....+.+ .+|++..+-+..|+ +.
T Consensus 136 ~~~~s~l~~lP~vtelHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r-~Fpnv~sv~v~e~P-lK 212 (418)
T KOG2982|consen 136 TQSTSSLDDLPKVTELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR-IFPNVNSVFVCEGP-LK 212 (418)
T ss_pred hhhhhhhhcchhhhhhhhccc-hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh-hcccchheeeecCc-cc
Confidence 33332 346788888888764 1111000 0011 12356666666663221 11223444 67888888888875 32
Q ss_pred HHHHHHHhccCCCCCccEEecCCCCCCC-HHHHHHHHhcCCCCcEEecCCCCC
Q 011710 294 DKCISALFDGTSKLQLQELDLSNLPHLS-DNGILTLATCRVPISELRVRQCPL 345 (479)
Q Consensus 294 ~~~~~~l~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~ 345 (479)
+..-..-+. ++|.+-.|+|+. +++. +..+.++. .+|.|..|+++++|-
T Consensus 213 ~~s~ek~se--~~p~~~~LnL~~-~~idswasvD~Ln-~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 213 TESSEKGSE--PFPSLSCLNLGA-NNIDSWASVDALN-GFPQLVDLRVSENPL 261 (418)
T ss_pred chhhcccCC--CCCcchhhhhcc-cccccHHHHHHHc-CCchhheeeccCCcc
Confidence 222111111 237777888887 4665 55566665 588999999988863
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.94 E-value=1.8e-06 Score=75.99 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=75.0
Q ss_pred cCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCC
Q 011710 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTS 305 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 305 (479)
.++.|+.++++++ .++. .-+++.-.|.++.|++++|.+...+- +.. +++|+.|+++++.--.-.|+.. +
T Consensus 282 TWq~LtelDLS~N-~I~~-iDESvKL~Pkir~L~lS~N~i~~v~n--La~--L~~L~~LDLS~N~Ls~~~Gwh~-----K 350 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQ-IDESVKLAPKLRRLILSQNRIRTVQN--LAE--LPQLQLLDLSGNLLAECVGWHL-----K 350 (490)
T ss_pred hHhhhhhcccccc-chhh-hhhhhhhccceeEEeccccceeeehh--hhh--cccceEeecccchhHhhhhhHh-----h
Confidence 4567778888773 3332 22344456788888888887654332 333 7778888888743222233322 2
Q ss_pred CCCccEEecCCCCCCCH-HHHHHHHhcCCCCcEEecCCCCCCCHHH-HHHHHhccccCCCcCCCCceEEEccCCC
Q 011710 306 KLQLQELDLSNLPHLSD-NGILTLATCRVPISELRVRQCPLIGDTS-VIALASMLVDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 306 ~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 378 (479)
+.++++|.++. +.+.+ .|+. .+-+|..|++++| +|.... +..+. .+|.|+.+.+.+|+
T Consensus 351 LGNIKtL~La~-N~iE~LSGL~----KLYSLvnLDl~~N-~Ie~ldeV~~IG---------~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 LGNIKTLKLAQ-NKIETLSGLR----KLYSLVNLDLSSN-QIEELDEVNHIG---------NLPCLETLRLTGNP 410 (490)
T ss_pred hcCEeeeehhh-hhHhhhhhhH----hhhhheecccccc-chhhHHHhcccc---------cccHHHHHhhcCCC
Confidence 26788888887 34432 2333 3456788888887 444322 22222 57788888888887
No 43
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.75 E-value=2.4e-05 Score=76.67 Aligned_cols=315 Identities=22% Similarity=0.276 Sum_probs=165.8
Q ss_pred CcEEEeecCccChhHHHHHHH---cCCCccEEeccCCCCCCCccccccchHHHHhhh----cC-CCccEEeccccccccc
Q 011710 61 IQKLCLSVDYITDAMVGTISQ---GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN----QH-GKLKHLSLIRSQEFLI 132 (479)
Q Consensus 61 L~~L~L~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~----~~-~~L~~L~l~~~~~~~~ 132 (479)
+.+|.|..+.+.+.....+.+ ..+.|+.|++++|. +.+.+...+. .. ..|++|.+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~---------l~~~g~~~l~~~l~~~~~~l~~L~l~~------ 153 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN---------LGDEGARLLCEGLRLPQCLLQTLELVS------ 153 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC---------CccHhHHHHHhhcccchHHHHHHHhhc------
Confidence 788888877777777666665 55688899999984 5566666554 22 3456666643
Q ss_pred ccccccchHHHHHH---HHcCCCCCeEEEcCCCccCHHHHHHHHH-------hCCCCceEEecCCCCCCHH--HHHHHHh
Q 011710 133 TYFRRVNDLGILLM---ADKCASMESICLGGFCRVTDTGFKTILH-------SCSNLYKLRVSHGTQLTDL--VFHDISA 200 (479)
Q Consensus 133 ~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~-------~~~~L~~L~l~~~~~~~~~--~~~~~~~ 200 (479)
..++..+...+ ...+..++.++++.+ .+...+...+.+ ...++++|.+.+|...... .+.....
T Consensus 154 ---c~l~~~g~~~l~~~L~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~ 229 (478)
T KOG4308|consen 154 ---CSLTSEGAAPLAAVLEKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA 229 (478)
T ss_pred ---ccccccchHHHHHHHhcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh
Confidence 22332222222 223667777888774 443333222222 2446777777776533221 1122222
Q ss_pred cCCC-ccEEEccCCCCCCHHHHHHhh----cC-CCCCEEecCCCCCCChHHHHhh----hcCCCCcEEEccCCCCchHHH
Q 011710 201 TSLS-LTHVCLRWCNLLTNHAIKSLA----SN-TGIKVLDLRDCKNLGDEALRAI----SSLPQLKILLLDGSDISDVGV 270 (479)
Q Consensus 201 ~~~~-L~~L~l~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~~~~l~~~~l 270 (479)
..+. +.+|++.. +.+.+.++..+. .+ +.++.++++.| .+++.+...+ ..++.++.+.+++|.+.+.+.
T Consensus 230 ~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 230 SGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred ccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 3333 56677766 566666655443 23 56677888775 5555554433 356778888888887777665
Q ss_pred HHHHhh--cCCCccEEecCCCCCCCHHHHHHHhccCCCCC-ccEEecCCCCCCCHHHHHHHHhcC----CCCcEEecCCC
Q 011710 271 SYLRLT--VITSLVKLSLRGCKRLTDKCISALFDGTSKLQ-LQELDLSNLPHLSDNGILTLATCR----VPISELRVRQC 343 (479)
Q Consensus 271 ~~l~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~-L~~L~l~~~~~l~~~~~~~l~~~~----~~L~~L~l~~~ 343 (479)
..+... ....+..+.+.++...+-.+...+........ +....+++ +...+.....+.... +.+..+++..+
T Consensus 308 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (478)
T KOG4308|consen 308 ELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISG-NRVGEEGLALLVLAKSNPKSELLRLSLNSQ 386 (478)
T ss_pred HHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhh-ccchHHHHHHHhhhhcccCcccchhhhhcc
Confidence 544441 23445555555433333222211111100012 22223333 344444443332211 23556666666
Q ss_pred CCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhc---cCCCCccEEEecCCC
Q 011710 344 PLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSV 405 (479)
Q Consensus 344 ~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~---~~~~~L~~L~l~~~~ 405 (479)
.+...+...++.... ..+.++.++++.+. ..+.+...+.. ... .++.++++.++
T Consensus 387 -~~~~~~~~~l~~~~~-----~~~~l~~~~l~~n~-~~~~~~~~l~~~~~~~~-~~~~~~l~~~~ 443 (478)
T KOG4308|consen 387 -VIEGRGALRLAAQLA-----SNEKLEILDLSLNS-LHDEGAEVLTEQLSRNG-SLKALRLSRNP 443 (478)
T ss_pred -ccccHHHHHhhhhhh-----hcchhhhhhhhcCc-cchhhHHHHHHhhhhcc-cchhhhhccCh
Confidence 444444444444333 57788888888776 33333322221 134 78888887766
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.61 E-value=1.3e-05 Score=54.79 Aligned_cols=59 Identities=29% Similarity=0.347 Sum_probs=28.8
Q ss_pred CccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCC
Q 011710 204 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD 264 (479)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 264 (479)
+|+.|++++| .+...+...+..+++|++|++++ +.+.......+..+++|+.|++++|.
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555553 33333333344555555555554 24444444445555555555555553
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.54 E-value=7.4e-05 Score=78.76 Aligned_cols=107 Identities=19% Similarity=0.190 Sum_probs=54.1
Q ss_pred CCCCcEEEeecCc--cChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccc
Q 011710 58 LPGIQKLCLSVDY--ITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 58 ~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 135 (479)
+++|+.|-+..+. +.. ....+...+|.|++|++++|..+... ...|+.+-+|++|++..
T Consensus 544 ~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~~L---------P~~I~~Li~LryL~L~~--------- 604 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLSKL---------PSSIGELVHLRYLDLSD--------- 604 (889)
T ss_pred CCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCccCcC---------ChHHhhhhhhhcccccC---------
Confidence 4567777666543 222 12222346777777777776432111 22455566777777753
Q ss_pred cccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCC
Q 011710 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 187 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 187 (479)
..+. .++.-...+..|..|++.....+... ..+...+++|++|.+...
T Consensus 605 t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 605 TGIS--HLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRS 652 (889)
T ss_pred CCcc--ccchHHHHHHhhheeccccccccccc--cchhhhcccccEEEeecc
Confidence 2222 11111233556777777664332222 233344677777776543
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.51 E-value=1.4e-05 Score=78.80 Aligned_cols=108 Identities=22% Similarity=0.221 Sum_probs=58.3
Q ss_pred HcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcC
Q 011710 148 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN 227 (479)
Q Consensus 148 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 227 (479)
+-++.|+.|+|++ +.+..-. .+..|++|++|++++|..-....+. ...| +|+.|.+.+ +.++ .+..+.++
T Consensus 184 qll~ale~LnLsh-Nk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~--~~gc-~L~~L~lrn-N~l~--tL~gie~L 253 (1096)
T KOG1859|consen 184 QLLPALESLNLSH-NKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLS--MVGC-KLQLLNLRN-NALT--TLRGIENL 253 (1096)
T ss_pred HHHHHhhhhccch-hhhhhhH---HHHhcccccccccccchhccccccc--hhhh-hheeeeecc-cHHH--hhhhHHhh
Confidence 3356677788877 4555432 3466778888887765521111111 1123 466777766 3332 23344566
Q ss_pred CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCC
Q 011710 228 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 265 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 265 (479)
.+|+.|+++.+--.....+..+..+..|+.|.|.+|.+
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 77777777663222222344445556667777777644
No 47
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.51 E-value=1.2e-06 Score=70.69 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=14.3
Q ss_pred CCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecC
Q 011710 152 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSH 186 (479)
Q Consensus 152 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~ 186 (479)
+++.|.+++ +.++.. ...+ ..+.+|+.|++.+
T Consensus 34 ~ITrLtLSH-NKl~~v-ppni-a~l~nlevln~~n 65 (264)
T KOG0617|consen 34 NITRLTLSH-NKLTVV-PPNI-AELKNLEVLNLSN 65 (264)
T ss_pred hhhhhhccc-Cceeec-CCcH-HHhhhhhhhhccc
Confidence 455555655 344432 1112 2344555555544
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.50 E-value=5.1e-05 Score=79.99 Aligned_cols=236 Identities=16% Similarity=0.137 Sum_probs=107.6
Q ss_pred cCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCC
Q 011710 149 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 228 (479)
Q Consensus 149 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 228 (479)
.+++|++|-+......-......++..+|.|+.|++++|..+.. ++.....+-+|+.|++++ ..+...+ ..+..+.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~-t~I~~LP-~~l~~Lk 618 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSD-TGISHLP-SGLGNLK 618 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccC-CCccccc-hHHHHHH
Confidence 35667777776621101111233346677888888877554332 222233444777777777 3554332 2455667
Q ss_pred CCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCC--CchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011710 229 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD--ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 306 (479)
Q Consensus 229 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 306 (479)
.|.+|++..+..+... ......+++|+.|.+.... .+...+..+. .+.+|+.+.+..+....-..+..+.+-.
T Consensus 619 ~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~--~Le~L~~ls~~~~s~~~~e~l~~~~~L~-- 693 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELE--NLEHLENLSITISSVLLLEDLLGMTRLR-- 693 (889)
T ss_pred hhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhh--cccchhhheeecchhHhHhhhhhhHHHH--
Confidence 7777777654333222 2222347777777776542 2222233332 2555555555332210001111110000
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcC-CCCceEEEccCCCCCCHHHH
Q 011710 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY-GSSIRLLDLYNCGGITQLAF 385 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~-~~~L~~L~l~~c~~i~~~~~ 385 (479)
...+.+.+.+|... ........+.+|+.|.+.+| .+.+........... .. ++++..+.+.+|....+...
T Consensus 694 ~~~~~l~~~~~~~~---~~~~~~~~l~~L~~L~i~~~-~~~e~~~~~~~~~~~----~~~f~~l~~~~~~~~~~~r~l~~ 765 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKR---TLISSLGSLGNLEELSILDC-GISEIVIEWEESLIV----LLCFPNLSKVSILNCHMLRDLTW 765 (889)
T ss_pred HHhHhhhhcccccc---eeecccccccCcceEEEEcC-CCchhhcccccccch----hhhHHHHHHHHhhccccccccch
Confidence 11122222221111 11111124667888888777 443322211110000 01 34455555666654333222
Q ss_pred HHhhccCCCCccEEEecCCC
Q 011710 386 RWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 386 ~~l~~~~~~~L~~L~l~~~~ 405 (479)
.. ..|+|+.|.+..|.
T Consensus 766 ~~----f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 766 LL----FAPHLTSLSLVSCR 781 (889)
T ss_pred hh----ccCcccEEEEeccc
Confidence 21 36788888888876
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.49 E-value=2.9e-05 Score=52.95 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=43.4
Q ss_pred CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011710 228 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
|+|++|++++| .+.......+..+++|+.|++++|.+.......+.. +++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~--l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSN--LPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTT--STTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcC--CCCCCEEeCcCC
Confidence 57888888885 677666677788888888888888776544433333 778888888775
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.45 E-value=1e-05 Score=79.79 Aligned_cols=106 Identities=25% Similarity=0.220 Sum_probs=57.9
Q ss_pred cCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCC
Q 011710 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTS 305 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 305 (479)
-++.|+.|+++.+ ++++. ..+..+++|++|+|++|.+.. ++.+...+|. |+.|.++++.--+-.++..+
T Consensus 185 ll~ale~LnLshN-k~~~v--~~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~-L~~L~lrnN~l~tL~gie~L----- 253 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTKV--DNLRRLPKLKHLDLSYNCLRH--VPQLSMVGCK-LQLLNLRNNALTTLRGIENL----- 253 (1096)
T ss_pred HHHHhhhhccchh-hhhhh--HHHHhcccccccccccchhcc--ccccchhhhh-heeeeecccHHHhhhhHHhh-----
Confidence 4567777777763 44332 356677777777777775543 2222221233 77777776432234555555
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCC
Q 011710 306 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 344 (479)
Q Consensus 306 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 344 (479)
.+|+.||+++ +-+.+-.--...-.+..|+.|.|.+||
T Consensus 254 -ksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 -KSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -hhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6777777776 333321111111124456777777765
No 51
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.39 E-value=6.6e-07 Score=72.18 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=9.0
Q ss_pred hhcCCCCcEEEccCCCCc
Q 011710 249 ISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 249 l~~l~~L~~L~l~~~~l~ 266 (479)
++.+.+|+.|++.+|+++
T Consensus 52 ia~l~nlevln~~nnqie 69 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIE 69 (264)
T ss_pred HHHhhhhhhhhcccchhh
Confidence 334455555555555444
No 52
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.26 E-value=6.1e-05 Score=73.88 Aligned_cols=218 Identities=23% Similarity=0.223 Sum_probs=106.1
Q ss_pred CCeEEEcCCCccCHHHHHHHHHh---CCCCceEEecCCCCCCHHHHHHHHhcC----CCccEEEccCCCCCCHHHHHH--
Q 011710 153 MESICLGGFCRVTDTGFKTILHS---CSNLYKLRVSHGTQLTDLVFHDISATS----LSLTHVCLRWCNLLTNHAIKS-- 223 (479)
Q Consensus 153 L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~-- 223 (479)
+..|.+.+| .+.+.++..+.+. .+.|..|+++++.. .+.+...+.... ..|+.|.+..| .++..+...
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l-~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNNL-GDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCCC-ccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHH
Confidence 666777774 5555555544443 35667777776553 344444444322 24555666665 233333322
Q ss_pred --hhcCCCCCEEecCCCCCCChHHHHh----h----hcCCCCcEEEccCCCCchHHHHHHHh--hcCCC-ccEEecCCCC
Q 011710 224 --LASNTGIKVLDLRDCKNLGDEALRA----I----SSLPQLKILLLDGSDISDVGVSYLRL--TVITS-LVKLSLRGCK 290 (479)
Q Consensus 224 --l~~~~~L~~L~l~~~~~l~~~~~~~----l----~~l~~L~~L~l~~~~l~~~~l~~l~~--~~~~~-L~~L~l~~~~ 290 (479)
+...+.++.++++.|. +...+... + ....++++|++.+|.++......+.. ...+. +..|++.. +
T Consensus 166 ~~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n 243 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-N 243 (478)
T ss_pred HHHhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-c
Confidence 2245666666666542 22222211 1 13456666666666666555443333 01222 44455544 3
Q ss_pred CCCHHHHHHHhccCCC--CCccEEecCCCCCCCHHHHHH---HHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcC
Q 011710 291 RLTDKCISALFDGTSK--LQLQELDLSNLPHLSDNGILT---LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY 365 (479)
Q Consensus 291 ~l~~~~~~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~---l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~ 365 (479)
.+.+.++..+...... +.+++++++.| .+++.+... ....++.++.+.+..+ .+++.+...+...+. .
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~-----~ 316 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALE-----R 316 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhh-----h
Confidence 4555555544433211 34566666663 444433332 2334456666666655 555555555554443 2
Q ss_pred CCCceEEEccCCCCCCH
Q 011710 366 GSSIRLLDLYNCGGITQ 382 (479)
Q Consensus 366 ~~~L~~L~l~~c~~i~~ 382 (479)
...+..+-+.++...+.
T Consensus 317 ~~~~~~~~l~~~~~~~~ 333 (478)
T KOG4308|consen 317 KTPLLHLVLGGTGKGTR 333 (478)
T ss_pred cccchhhhccccCccch
Confidence 34445555554444444
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.0003 Score=61.32 Aligned_cols=110 Identities=21% Similarity=0.230 Sum_probs=59.7
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCH-HHHHHHHh
Q 011710 278 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGD-TSVIALAS 356 (479)
Q Consensus 278 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~ 356 (479)
+..|+.|++.++...+-.++. .+++|+.|.++........++..++..+|+|++|++++| ++.+ ..+..+.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P------~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~- 113 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFP------KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLK- 113 (260)
T ss_pred ccchhhhhhhccceeecccCC------CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhh-
Confidence 455666665554333222222 337888888877322334455566667788888888887 5553 2222222
Q ss_pred ccccCCCcCCCCceEEEccCCCCCC--HHHHHHhhccCCCCccEEEecCCC
Q 011710 357 MLVDDDRWYGSSIRLLDLYNCGGIT--QLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 357 ~~~~~~~~~~~~L~~L~l~~c~~i~--~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+++|..|++.+|.... +-.-..+. .+|+|++|+-..+.
T Consensus 114 --------~l~nL~~Ldl~n~~~~~l~dyre~vf~--ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 114 --------ELENLKSLDLFNCSVTNLDDYREKVFL--LLPSLKYLDGCDVD 154 (260)
T ss_pred --------hhcchhhhhcccCCccccccHHHHHHH--HhhhhccccccccC
Confidence 36667777777776221 11112222 25667666654443
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=8.3e-05 Score=64.75 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=29.3
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCC
Q 011710 278 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQC 343 (479)
Q Consensus 278 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 343 (479)
+|+|+.|.++....-...++..++..+ |+|+++++++ +.+.+..-..-...+++|..|++.+|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~--P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKA--PNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhC--CceeEEeecC-CccccccccchhhhhcchhhhhcccC
Confidence 455566666553222233444444444 5666666665 44443211112223455555665555
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.67 E-value=0.0035 Score=59.61 Aligned_cols=57 Identities=11% Similarity=0.140 Sum_probs=29.3
Q ss_pred CCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCC
Q 011710 150 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 216 (479)
Q Consensus 150 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (479)
|++++.|++++| .+.... ...++|++|.+.+|..+....- ...++|+.|.+++|..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~----~LP~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTTLPG----SIPEGLEKLTVCHCPEI 107 (426)
T ss_pred hcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCcccCCc----hhhhhhhheEccCcccc
Confidence 567777777776 444321 1123577777766655322110 01235666666666444
No 56
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.59 E-value=0.0032 Score=34.22 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=10.3
Q ss_pred CCCcEEecCCCCCCCHHHHHHH
Q 011710 333 VPISELRVRQCPLIGDTSVIAL 354 (479)
Q Consensus 333 ~~L~~L~l~~~~~l~~~~~~~l 354 (479)
++|+.|+|++|+.++|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4444444444444444444444
No 57
>PLN03150 hypothetical protein; Provisional
Probab=96.57 E-value=0.0044 Score=63.87 Aligned_cols=105 Identities=24% Similarity=0.175 Sum_probs=65.6
Q ss_pred CCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC---HHHHHHHhccCCC
Q 011710 230 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSK 306 (479)
Q Consensus 230 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~ 306 (479)
++.|+|+++ .+.......+..+++|+.|+|++|.+.......+.. +++|+.|+++++. ++ +..+..+
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~--l~~L~~LdLs~N~-lsg~iP~~l~~L------ 489 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--ITSLEVLDLSYNS-FNGSIPESLGQL------ 489 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC--CCCCCEEECCCCC-CCCCCchHHhcC------
Confidence 677788774 555445556778888888888888776443334444 8888888888753 33 2333333
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCC
Q 011710 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPL 345 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 345 (479)
++|++|+|+++ .++......+.....++..+++.+|+.
T Consensus 490 ~~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 490 TSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCCEEECcCC-cccccCChHHhhccccCceEEecCCcc
Confidence 78888888884 454222222333334667788877753
No 58
>PLN03150 hypothetical protein; Provisional
Probab=96.55 E-value=0.0051 Score=63.40 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=69.6
Q ss_pred CCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC---HHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 011710 254 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 330 (479)
Q Consensus 254 ~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 330 (479)
.++.|+|+++.+.......+.. +++|+.|+++++. +. +..+..+ ++|+.|+|+++ .++......+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~--L~~L~~L~Ls~N~-l~g~iP~~~~~l------~~L~~LdLs~N-~lsg~iP~~l~- 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK--LRHLQSINLSGNS-IRGNIPPSLGSI------TSLEVLDLSYN-SFNGSIPESLG- 487 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC--CCCCCEEECCCCc-ccCcCChHHhCC------CCCCEEECCCC-CCCCCCchHHh-
Confidence 4788999998776544444554 8999999999864 33 2223323 89999999984 66532222233
Q ss_pred cCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCC
Q 011710 331 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG 379 (479)
Q Consensus 331 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 379 (479)
.+++|+.|++++| .++......+.. ...++..+++.+|..
T Consensus 488 ~L~~L~~L~Ls~N-~l~g~iP~~l~~--------~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 488 QLTSLRILNLNGN-SLSGRVPAALGG--------RLLHRASFNFTDNAG 527 (623)
T ss_pred cCCCCCEEECcCC-cccccCChHHhh--------ccccCceEEecCCcc
Confidence 6899999999998 555443333333 234567788887764
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.31 E-value=0.0072 Score=37.72 Aligned_cols=38 Identities=34% Similarity=0.506 Sum_probs=20.7
Q ss_pred CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCch
Q 011710 228 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISD 267 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~ 267 (479)
++|++|+++++ .+++... .++++++|+.|++++|.+++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~-~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP-ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-CCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence 35666666663 4544321 25666666666666666553
No 60
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.29 E-value=0.005 Score=33.44 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhc
Q 011710 366 GSSIRLLDLYNCGGITQLAFRWLKK 390 (479)
Q Consensus 366 ~~~L~~L~l~~c~~i~~~~~~~l~~ 390 (479)
|++|+.|+|++|+.+++.++..+..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5789999999999999999988754
No 61
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.09 E-value=0.0047 Score=60.20 Aligned_cols=189 Identities=24% Similarity=0.311 Sum_probs=103.3
Q ss_pred EEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhh-hcC-CCccEEecccccccccccccccch
Q 011710 63 KLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQI-NQH-GKLKHLSLIRSQEFLITYFRRVND 140 (479)
Q Consensus 63 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l-~~~-~~L~~L~l~~~~~~~~~~~~~~~~ 140 (479)
.+.+..+.+... ...+. .++.++.|++.++.. +. ++.. ... ++|+.|+++. +.+..
T Consensus 97 ~l~~~~~~~~~~-~~~~~-~~~~l~~L~l~~n~i---------~~--i~~~~~~~~~nL~~L~l~~---------N~i~~ 154 (394)
T COG4886 97 SLDLNLNRLRSN-ISELL-ELTNLTSLDLDNNNI---------TD--IPPLIGLLKSNLKELDLSD---------NKIES 154 (394)
T ss_pred eeeccccccccC-chhhh-cccceeEEecCCccc---------cc--Cccccccchhhcccccccc---------cchhh
Confidence 455555544211 22222 456788888877642 22 2222 223 2677777753 22222
Q ss_pred HHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHH
Q 011710 141 LGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHA 220 (479)
Q Consensus 141 ~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 220 (479)
. ..-...+++|+.|++++ +.+.+... .....+.|+.|+++++.. ... .........|++|.+++...+. .
T Consensus 155 l--~~~~~~l~~L~~L~l~~-N~l~~l~~--~~~~~~~L~~L~ls~N~i-~~l--~~~~~~~~~L~~l~~~~N~~~~--~ 224 (394)
T COG4886 155 L--PSPLRNLPNLKNLDLSF-NDLSDLPK--LLSNLSNLNNLDLSGNKI-SDL--PPEIELLSALEELDLSNNSIIE--L 224 (394)
T ss_pred h--hhhhhccccccccccCC-chhhhhhh--hhhhhhhhhheeccCCcc-ccC--chhhhhhhhhhhhhhcCCccee--c
Confidence 1 11224578888888888 45555422 112567888888887653 111 1111233357888887732221 1
Q ss_pred HHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011710 221 IKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 221 ~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
...+..+.++..+.+.++ .+... ...+..+++++.|++++|.+++... +.. ..+++.|++++.
T Consensus 225 ~~~~~~~~~l~~l~l~~n-~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~--~~~l~~L~~s~n 287 (394)
T COG4886 225 LSSLSNLKNLSGLELSNN-KLEDL-PESIGNLSNLETLDLSNNQISSISS--LGS--LTNLRELDLSGN 287 (394)
T ss_pred chhhhhcccccccccCCc-eeeec-cchhccccccceecccccccccccc--ccc--cCccCEEeccCc
Confidence 223446666777666553 33221 3455677788888888887775443 333 788888888874
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.07 E-value=0.0041 Score=52.22 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=49.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHH-HHHHHhccccCCCcCCCCceEEEccCCCCCCHHH-
Q 011710 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTS-VIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA- 384 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~- 384 (479)
+.|.+|.+++ +.|+...- .+...+|+|..|.+.+| .+...+ +..++ .||+|++|.+-+++ ++...
T Consensus 64 ~rL~tLll~n-NrIt~I~p-~L~~~~p~l~~L~LtnN-si~~l~dl~pLa---------~~p~L~~Ltll~Np-v~~k~~ 130 (233)
T KOG1644|consen 64 PRLHTLLLNN-NRITRIDP-DLDTFLPNLKTLILTNN-SIQELGDLDPLA---------SCPKLEYLTLLGNP-VEHKKN 130 (233)
T ss_pred cccceEEecC-Ccceeecc-chhhhccccceEEecCc-chhhhhhcchhc---------cCCccceeeecCCc-hhcccC
Confidence 6677777776 45553211 12234677788888777 443332 33333 47888888888887 44322
Q ss_pred HHHhhccCCCCccEEEecCCC
Q 011710 385 FRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 385 ~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+...--.+|+|+.|++++..
T Consensus 131 YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 131 YRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ceeEEEEecCcceEeehhhhh
Confidence 221111137888888888765
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.06 E-value=0.015 Score=55.40 Aligned_cols=139 Identities=16% Similarity=0.196 Sum_probs=83.0
Q ss_pred hcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCC-CCchHHHHHHHhhcC
Q 011710 200 ATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVI 278 (479)
Q Consensus 200 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~-~l~~~~l~~l~~~~~ 278 (479)
..+++++.|++++| .+...+ . -.++|++|.+++|..++... ..+ .++|+.|++++| .+.. ..
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP--~--LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~s---------LP 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP--V--LPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISG---------LP 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC--C--CCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccc---------cc
Confidence 34689999999998 554433 1 23479999999987764322 112 258999999988 4431 23
Q ss_pred CCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhcc
Q 011710 279 TSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASML 358 (479)
Q Consensus 279 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 358 (479)
++|+.|.+.. .... .+..+. ++|+.|.+.+.+......+.. ...++|+.|.+++|..+. +...
T Consensus 112 ~sLe~L~L~~-n~~~--~L~~LP-----ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~------LP~~- 174 (426)
T PRK15386 112 ESVRSLEIKG-SATD--SIKNVP-----NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII------LPEK- 174 (426)
T ss_pred cccceEEeCC-CCCc--ccccCc-----chHhheecccccccccccccc--ccCCcccEEEecCCCccc------Cccc-
Confidence 5688888864 2222 123332 678888886532211111110 112589999999995431 1111
Q ss_pred ccCCCcCCCCceEEEccCCC
Q 011710 359 VDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 359 ~~~~~~~~~~L~~L~l~~c~ 378 (479)
-..+|+.|+++.+.
T Consensus 175 ------LP~SLk~L~ls~n~ 188 (426)
T PRK15386 175 ------LPESLQSITLHIEQ 188 (426)
T ss_pred ------ccccCcEEEecccc
Confidence 23579999987753
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.91 E-value=0.0067 Score=51.01 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=15.8
Q ss_pred cCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCC
Q 011710 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 265 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 265 (479)
.++.|..|.+++ +.++.....--.-+|+|+.|.+.+|.+
T Consensus 62 ~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 62 HLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred CccccceEEecC-CcceeeccchhhhccccceEEecCcch
Confidence 444444554444 233332222122334445555554443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.0021 Score=56.68 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=28.2
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLI 125 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 125 (479)
+.+.+.|++.++.++|..+ .+.+|.|++|.|+-|. |+ .+..+..|.+|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNk---------Is--sL~pl~rCtrLkElYLR 71 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNK---------IS--SLAPLQRCTRLKELYLR 71 (388)
T ss_pred HHHhhhhcccCCCccHHHH---HHhcccceeEEeeccc---------cc--cchhHHHHHHHHHHHHH
Confidence 3455556666666665322 3456666666666553 21 23344455556555554
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.81 E-value=0.0095 Score=58.09 Aligned_cols=59 Identities=31% Similarity=0.317 Sum_probs=26.6
Q ss_pred CccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 204 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
+|+.|++++ +.+.... ..+..+++|+.|+++.+ .+.+... .....++|+.|++++|.+.
T Consensus 141 nL~~L~l~~-N~i~~l~-~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 141 NLKELDLSD-NKIESLP-SPLRNLPNLKNLDLSFN-DLSDLPK-LLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hcccccccc-cchhhhh-hhhhccccccccccCCc-hhhhhhh-hhhhhhhhhheeccCCccc
Confidence 555555555 3333221 22335555666655553 2322211 1114455555555555444
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.53 E-value=0.013 Score=36.47 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=23.2
Q ss_pred CCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCC
Q 011710 59 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAP 95 (479)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 95 (479)
++|++|+++++.+.+ ++.....+++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 467888888877775 34423478888888888874
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.0057 Score=54.01 Aligned_cols=113 Identities=21% Similarity=0.215 Sum_probs=65.3
Q ss_pred CCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHH-HHHHHhccCC
Q 011710 227 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK-CISALFDGTS 305 (479)
Q Consensus 227 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~ 305 (479)
+.+.+.|+..|| .+.+. ..+..++.|+.|.|+-|.|+. +..+.. |.+|+.|++..+ .+.+. .+..+ . .
T Consensus 18 l~~vkKLNcwg~-~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~r--CtrLkElYLRkN-~I~sldEL~YL-k--n 86 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQR--CTRLKELYLRKN-CIESLDELEYL-K--N 86 (388)
T ss_pred HHHhhhhcccCC-CccHH--HHHHhcccceeEEeecccccc--chhHHH--HHHHHHHHHHhc-ccccHHHHHHH-h--c
Confidence 345667777776 45443 334577888888888887753 444444 778888888762 34432 22222 1 3
Q ss_pred CCCccEEecCCCCCCC---HHHHHHHHhcCCCCcEEecCCCCCCCHHHHHH
Q 011710 306 KLQLQELDLSNLPHLS---DNGILTLATCRVPISELRVRQCPLIGDTSVIA 353 (479)
Q Consensus 306 ~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 353 (479)
+|+|++|.|..++-.. ..--..+.+.+|+|++|+= ..++...+..
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn---v~VteeEle~ 134 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN---VPVTEEELEE 134 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhccC---ccccHHHHHH
Confidence 3778888776543322 2222245556788887753 2455554444
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.37 E-value=0.006 Score=59.78 Aligned_cols=107 Identities=27% Similarity=0.261 Sum_probs=55.1
Q ss_pred HcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcC
Q 011710 148 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN 227 (479)
Q Consensus 148 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 227 (479)
..+++|+.|++.+ +.+.. +......+++|++|+++++....-.++. .++.|+.|++.+ +.+... ..+..+
T Consensus 92 ~~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~-N~i~~~--~~~~~l 161 (414)
T KOG0531|consen 92 SKLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSG-NLISDI--SGLESL 161 (414)
T ss_pred ccccceeeeeccc-cchhh--cccchhhhhcchheeccccccccccchh----hccchhhheecc-Ccchhc--cCCccc
Confidence 3456677777776 34443 2221345677777777766533322222 233466777766 333322 223345
Q ss_pred CCCCEEecCCCCCCChHHH-HhhhcCCCCcEEEccCCCCc
Q 011710 228 TGIKVLDLRDCKNLGDEAL-RAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~ 266 (479)
+.|+.++++++ .+..... . +..+.+++.+.+.+|.+.
T Consensus 162 ~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 162 KSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchh
Confidence 66666666663 3322221 1 355666666666666444
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.34 E-value=0.012 Score=46.27 Aligned_cols=63 Identities=24% Similarity=0.261 Sum_probs=33.8
Q ss_pred HhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011710 223 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 223 ~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
.+.....|+..+|+++ .+.+.........|.++.|++++|.+.+.... ++. ++.|+.|+++.+
T Consensus 48 ~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aa--m~aLr~lNl~~N 110 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAA--MPALRSLNLRFN 110 (177)
T ss_pred HHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHH-Hhh--hHHhhhcccccC
Confidence 3445556666666662 44433333333455666666666666544333 333 666666666653
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.92 E-value=0.059 Score=28.44 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=12.0
Q ss_pred CCCcEEEccCCCCchHHHHHHH
Q 011710 253 PQLKILLLDGSDISDVGVSYLR 274 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~~~l~~l~ 274 (479)
++|+.|+|++|.|++.++..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5566666666666666655543
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.85 E-value=0.047 Score=28.84 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=7.0
Q ss_pred CCcEEecCCCCCCCHHHHHH
Q 011710 334 PISELRVRQCPLIGDTSVIA 353 (479)
Q Consensus 334 ~L~~L~l~~~~~l~~~~~~~ 353 (479)
+|+.|+|++| .+++.++..
T Consensus 3 ~L~~L~l~~n-~i~~~g~~~ 21 (24)
T PF13516_consen 3 NLETLDLSNN-QITDEGASA 21 (24)
T ss_dssp T-SEEE-TSS-BEHHHHHHH
T ss_pred CCCEEEccCC-cCCHHHHHH
Confidence 3444444444 344444433
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.37 E-value=0.053 Score=42.83 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=52.0
Q ss_pred CCeEEEcCCCccC-HHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCC
Q 011710 153 MESICLGGFCRVT-DTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK 231 (479)
Q Consensus 153 L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 231 (479)
+..++|+.|.-.- ...+.. +.....|+..+++++.. ... ...+....+.++.|++.. +.+.+.+.+ ++.++.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~-l~~~~el~~i~ls~N~f-k~f-p~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYM-LSKGYELTKISLSDNGF-KKF-PKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALR 103 (177)
T ss_pred hhhcccccchhhHHHHHHHH-HhCCceEEEEecccchh-hhC-CHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhh
Confidence 5566666663211 111222 23344566666665442 111 112333445666666666 455555554 66666677
Q ss_pred EEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 232 VLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 232 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
.|+++.+ .+. .....+..+.++-.|+..++.+.
T Consensus 104 ~lNl~~N-~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 104 SLNLRFN-PLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hcccccC-ccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 7666653 221 22333444555555666555443
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.10 E-value=0.043 Score=53.83 Aligned_cols=100 Identities=34% Similarity=0.372 Sum_probs=53.1
Q ss_pred cCCCccEEEccCCCCCCHHHHHH-hhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCC
Q 011710 201 TSLSLTHVCLRWCNLLTNHAIKS-LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVIT 279 (479)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~ 279 (479)
.+.+|+.|++.+ +.+.. +.. +..+++|++|+++++ .++. +..+..++.|+.|++.+|.+.... .+. .++
T Consensus 93 ~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~~l~~L~~L~l~~N~i~~~~--~~~--~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLSTLTLLKELNLSGNLISDIS--GLE--SLK 162 (414)
T ss_pred cccceeeeeccc-cchhh--cccchhhhhcchheecccc-cccc--ccchhhccchhhheeccCcchhcc--CCc--cch
Confidence 445677777766 34332 222 446777777777773 4432 234445556777777777665321 111 145
Q ss_pred CccEEecCCCCCCCHHH--HHHHhccCCCCCccEEecCC
Q 011710 280 SLVKLSLRGCKRLTDKC--ISALFDGTSKLQLQELDLSN 316 (479)
Q Consensus 280 ~L~~L~l~~~~~l~~~~--~~~l~~~~~~~~L~~L~l~~ 316 (479)
.|+.++++++....-+. ...+ .+++.+.+.+
T Consensus 163 ~L~~l~l~~n~i~~ie~~~~~~~------~~l~~l~l~~ 195 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIENDELSEL------ISLEELDLGG 195 (414)
T ss_pred hhhcccCCcchhhhhhhhhhhhc------cchHHHhccC
Confidence 66666666643221122 1222 5666666666
No 75
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=90.74 E-value=0.017 Score=56.35 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCC
Q 011710 152 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK 231 (479)
Q Consensus 152 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 231 (479)
-|+.|.+++ ++++.. ...+. ..+.|..|+.+.|...+ +..-...+.+|+.|++.. +.+...+- .+. .-.|.
T Consensus 144 pLkvli~sN-Nkl~~l-p~~ig-~~~tl~~ld~s~nei~s---lpsql~~l~slr~l~vrR-n~l~~lp~-El~-~LpLi 214 (722)
T KOG0532|consen 144 PLKVLIVSN-NKLTSL-PEEIG-LLPTLAHLDVSKNEIQS---LPSQLGYLTSLRDLNVRR-NHLEDLPE-ELC-SLPLI 214 (722)
T ss_pred cceeEEEec-CccccC-Ccccc-cchhHHHhhhhhhhhhh---chHHhhhHHHHHHHHHhh-hhhhhCCH-HHh-CCcee
Confidence 488888887 566543 23333 56778888877765321 111122334666666665 34433322 233 33577
Q ss_pred EEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011710 232 VLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 232 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
.|+++. +++....+ .+..+..|+.|.|.+|.+.........+....-.++|++..|
T Consensus 215 ~lDfSc-Nkis~iPv-~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 215 RLDFSC-NKISYLPV-DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeccc-Cceeecch-hhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 888875 45544333 466788888888888877765554444322233455555555
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.50 E-value=0.53 Score=25.91 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=16.7
Q ss_pred CCCcEEEccCCCCchHHHHHHHh
Q 011710 253 PQLKILLLDGSDISDVGVSYLRL 275 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~~~l~~l~~ 275 (479)
++|+.|+|++|.+.+.|...+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 46777777777777777776655
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.30 E-value=0.65 Score=25.54 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=10.5
Q ss_pred CCcEEecCCCCCCCHHHHHHHHh
Q 011710 334 PISELRVRQCPLIGDTSVIALAS 356 (479)
Q Consensus 334 ~L~~L~l~~~~~l~~~~~~~l~~ 356 (479)
+|+.|+|++| .+++.|...++.
T Consensus 3 ~L~~LdL~~N-~i~~~G~~~L~~ 24 (28)
T smart00368 3 SLRELDLSNN-KLGDEGARALAE 24 (28)
T ss_pred ccCEEECCCC-CCCHHHHHHHHH
Confidence 3445555444 445554444443
No 78
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=87.33 E-value=0.07 Score=52.19 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=74.3
Q ss_pred hhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhc
Q 011710 224 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFD 302 (479)
Q Consensus 224 l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~ 302 (479)
+..+..|..|+|+.+ .+.... ..+.. --|+.|-+++|.++..... +. ..++|..|+.+.|.-.+ ...+..+
T Consensus 117 i~~L~~lt~l~ls~N-qlS~lp-~~lC~-lpLkvli~sNNkl~~lp~~-ig--~~~tl~~ld~s~nei~slpsql~~l-- 188 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSN-QLSHLP-DGLCD-LPLKVLIVSNNKLTSLPEE-IG--LLPTLAHLDVSKNEIQSLPSQLGYL-- 188 (722)
T ss_pred hhhhhHHHHhhhccc-hhhcCC-hhhhc-CcceeEEEecCccccCCcc-cc--cchhHHHhhhhhhhhhhchHHhhhH--
Confidence 345566667776653 322111 11222 2467777777765532211 22 24566666666643222 1222222
Q ss_pred cCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCH
Q 011710 303 GTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ 382 (479)
Q Consensus 303 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~ 382 (479)
.+|+.|.+.. +.+....- .++ +-.|..|+++.| ++....+.. . .++.|++|-|.+|+ +..
T Consensus 189 ----~slr~l~vrR-n~l~~lp~-El~--~LpLi~lDfScN-kis~iPv~f-r---------~m~~Lq~l~LenNP-LqS 248 (722)
T KOG0532|consen 189 ----TSLRDLNVRR-NHLEDLPE-ELC--SLPLIRLDFSCN-KISYLPVDF-R---------KMRHLQVLQLENNP-LQS 248 (722)
T ss_pred ----HHHHHHHHhh-hhhhhCCH-HHh--CCceeeeecccC-ceeecchhh-h---------hhhhheeeeeccCC-CCC
Confidence 5666666665 33322111 122 224777788766 555433322 1 35678888888777 554
Q ss_pred HHHHHhhccCCCCccEEEecCC
Q 011710 383 LAFRWLKKPYFPRLRWLGVTGS 404 (479)
Q Consensus 383 ~~~~~l~~~~~~~L~~L~l~~~ 404 (479)
-..+-..++...=.|+|+...|
T Consensus 249 PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 249 PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ChHHHHhccceeeeeeecchhc
Confidence 3333332222334556666666
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.89 E-value=1.2 Score=43.69 Aligned_cols=85 Identities=19% Similarity=0.096 Sum_probs=45.4
Q ss_pred HhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCC-CCHHHHHHhhccCCCCccEEEecCCC--
Q 011710 329 ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG-ITQLAFRWLKKPYFPRLRWLGVTGSV-- 405 (479)
Q Consensus 329 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~-i~~~~~~~l~~~~~~~L~~L~l~~~~-- 405 (479)
....|.+..+.|++|.-..-.++..++. ..|+|+.|+|++|.. +.. ...+.+-....|++|.+.||+
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq--------~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQ--------IAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHH--------hcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccc
Confidence 3445666666666663333344555555 566677777776621 111 112222134567777777766
Q ss_pred -----CHHHHHHHHhcCCCceee
Q 011710 406 -----NRDILDALARSRPFLNVA 423 (479)
Q Consensus 406 -----~~~~~~~~~~~~p~l~~~ 423 (479)
...-+.++.+.+|++...
T Consensus 284 ~tf~~~s~yv~~i~~~FPKL~~L 306 (585)
T KOG3763|consen 284 TTFSDRSEYVSAIRELFPKLLRL 306 (585)
T ss_pred cchhhhHHHHHHHHHhcchheee
Confidence 233455666677777643
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=83.50 E-value=0.38 Score=38.16 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=4.2
Q ss_pred CCCCCeEEEcC
Q 011710 150 CASMESICLGG 160 (479)
Q Consensus 150 ~~~L~~L~l~~ 160 (479)
+++|+.+.+..
T Consensus 34 ~~~l~~i~~~~ 44 (129)
T PF13306_consen 34 CTSLKSINFPN 44 (129)
T ss_dssp -TT-SEEEESS
T ss_pred ccccccccccc
Confidence 34455554443
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=82.20 E-value=1 Score=21.37 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=4.6
Q ss_pred CCcEEEccCCCC
Q 011710 254 QLKILLLDGSDI 265 (479)
Q Consensus 254 ~L~~L~l~~~~l 265 (479)
+|+.|++++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555543
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.42 E-value=0.51 Score=37.39 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=3.2
Q ss_pred cCCCCCEEec
Q 011710 226 SNTGIKVLDL 235 (479)
Q Consensus 226 ~~~~L~~L~l 235 (479)
.+++|+.+.+
T Consensus 33 ~~~~l~~i~~ 42 (129)
T PF13306_consen 33 NCTSLKSINF 42 (129)
T ss_dssp T-TT-SEEEE
T ss_pred cccccccccc
Confidence 3334444444
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.09 E-value=4.2 Score=40.16 Aligned_cols=66 Identities=26% Similarity=0.334 Sum_probs=32.8
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCC-CCC-HHHHHHHHhcCCCCcEEecCCCCCC
Q 011710 277 VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP-HLS-DNGILTLATCRVPISELRVRQCPLI 346 (479)
Q Consensus 277 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~-~l~-~~~~~~l~~~~~~L~~L~l~~~~~l 346 (479)
..|.+..++++++.-..-+++..+++.. |+|+.|+|++.. .+. ...+..+ ....|++|-+.+||-.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~a--pklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIA--PKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhc--chhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccc
Confidence 4566666666664433344455554444 667777776620 121 1122222 2234666666666533
No 84
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=62.08 E-value=2.9 Score=43.43 Aligned_cols=10 Identities=40% Similarity=0.448 Sum_probs=4.0
Q ss_pred CCCccEEEec
Q 011710 393 FPRLRWLGVT 402 (479)
Q Consensus 393 ~~~L~~L~l~ 402 (479)
-|.|-.-.+.
T Consensus 1299 VP~Ldqc~Vt 1308 (1516)
T KOG1832|consen 1299 VPSLDQCAVT 1308 (1516)
T ss_pred CccccceEEE
Confidence 3444433333
No 85
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=57.62 E-value=5.5 Score=20.26 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=7.7
Q ss_pred CCcEEEccCCCCc
Q 011710 254 QLKILLLDGSDIS 266 (479)
Q Consensus 254 ~L~~L~l~~~~l~ 266 (479)
+|+.|++++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 3566666666554
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=55.04 E-value=11 Score=19.97 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=9.7
Q ss_pred CCCcEEEccCCCCch
Q 011710 253 PQLKILLLDGSDISD 267 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~ 267 (479)
++|+.|++++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 566777777775553
No 87
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=55.04 E-value=11 Score=19.97 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=9.7
Q ss_pred CCCcEEEccCCCCch
Q 011710 253 PQLKILLLDGSDISD 267 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~ 267 (479)
++|+.|++++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 566777777775553
No 88
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=52.08 E-value=21 Score=33.18 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=16.1
Q ss_pred HHhcCCCCcEEecCCCCCCCHHHHHHHHhc
Q 011710 328 LATCRVPISELRVRQCPLIGDTSVIALASM 357 (479)
Q Consensus 328 l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 357 (479)
+...++.|++|++.+| .|+..++.++..+
T Consensus 250 ml~~n~sl~slnvesn-FItg~gi~a~~~a 278 (353)
T KOG3735|consen 250 MLKENKSLTSLNVESN-FITGLGIMALLRA 278 (353)
T ss_pred HHhhcchhhheecccc-ccccHHHHHHHHH
Confidence 3444555666666665 5666555555543
No 89
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=51.57 E-value=11 Score=20.17 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=3.8
Q ss_pred ccEEecCC
Q 011710 309 LQELDLSN 316 (479)
Q Consensus 309 L~~L~l~~ 316 (479)
||+|.|..
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 44455544
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=49.48 E-value=26 Score=34.28 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=11.5
Q ss_pred CCCCceEEEccCCCCCCHHH
Q 011710 365 YGSSIRLLDLYNCGGITQLA 384 (479)
Q Consensus 365 ~~~~L~~L~l~~c~~i~~~~ 384 (479)
.-+.+..|+++++. ..+.+
T Consensus 438 stqtl~kldisgn~-mgd~g 456 (553)
T KOG4242|consen 438 STQTLAKLDISGNG-MGDGG 456 (553)
T ss_pred cCcccccccccCCC-cccCC
Confidence 35667777777766 44433
No 91
>PHA02608 67 prohead core protein; Provisional
Probab=43.38 E-value=17 Score=25.31 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=9.1
Q ss_pred HHHHHHHhcCCCCC
Q 011710 449 DELEQWLMEGEDES 462 (479)
Q Consensus 449 ~~l~~~~~~~~~~~ 462 (479)
.--+.++.+||..+
T Consensus 38 eIA~sv~iEGEe~e 51 (80)
T PHA02608 38 EIARSVMIEGEEPE 51 (80)
T ss_pred HHHHHHhhcCCCCc
Confidence 34566788887654
No 92
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=40.71 E-value=74 Score=29.70 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=58.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCC---CCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHH
Q 011710 307 LQLQELDLSNLPHLSDNGILTLATCRV---PISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 383 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~---~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~ 383 (479)
+.++.+++.+...|....+..+...+. ..+...+.+- ...+....+++.++. .++.|++|+++++. ||..
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~-----~n~sl~slnvesnF-Itg~ 270 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLK-----ENKSLTSLNVESNF-ITGL 270 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHh-----hcchhhheeccccc-cccH
Confidence 889999998877787776666655553 3444444433 344444444444444 68999999999998 9988
Q ss_pred HHHHhhcc--CCCCccEEEecC
Q 011710 384 AFRWLKKP--YFPRLRWLGVTG 403 (479)
Q Consensus 384 ~~~~l~~~--~~~~L~~L~l~~ 403 (479)
++-.+..+ .-.+|..+.+.+
T Consensus 271 gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 271 GIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred HHHHHHHHHhccchhhHhhhhh
Confidence 87766541 134666666543
No 93
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=37.89 E-value=30 Score=18.60 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=9.4
Q ss_pred CCCcEEEccCCCCc
Q 011710 253 PQLKILLLDGSDIS 266 (479)
Q Consensus 253 ~~L~~L~l~~~~l~ 266 (479)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777777777654
No 94
>PF05756 S-antigen: S-antigen protein; InterPro: IPR008825 S-antigens are heat stable proteins that are found in the blood of individuals infected with malaria [].
Probab=28.86 E-value=33 Score=23.81 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=7.3
Q ss_pred HHHHHHHhcCCCCC
Q 011710 449 DELEQWLMEGEDES 462 (479)
Q Consensus 449 ~~l~~~~~~~~~~~ 462 (479)
+..++...++|.+.
T Consensus 55 ~ky~dleee~egen 68 (94)
T PF05756_consen 55 QKYEDLEEEKEGEN 68 (94)
T ss_pred cchhhHHHhccCCC
Confidence 34555555555554
No 95
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=23.27 E-value=40 Score=28.93 Aligned_cols=12 Identities=33% Similarity=0.745 Sum_probs=8.3
Q ss_pred chHHHHHHHhcC
Q 011710 447 EVDELEQWLMEG 458 (479)
Q Consensus 447 ~~~~l~~~~~~~ 458 (479)
+.+.+++|+-.+
T Consensus 227 ~~~dlekWl~~~ 238 (303)
T COG5129 227 KKKDLEKWLGSD 238 (303)
T ss_pred hHHHHHHHhccc
Confidence 356799999433
No 96
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=22.02 E-value=2.6e+02 Score=18.87 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=14.1
Q ss_pred eEEEccCCCCCCHHHHHHhhc----cCCCCccEEEe
Q 011710 370 RLLDLYNCGGITQLAFRWLKK----PYFPRLRWLGV 401 (479)
Q Consensus 370 ~~L~l~~c~~i~~~~~~~l~~----~~~~~L~~L~l 401 (479)
+.+.+..+. ++...+..+.. +..|+|+.+.+
T Consensus 35 ~~i~l~~~~-~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 35 KKIELWNSK-FTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CEEEEECCC-CCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 334444443 55544433322 34566666554
No 97
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=21.20 E-value=59 Score=17.57 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=9.5
Q ss_pred CCCcEEEccCCCCc
Q 011710 253 PQLKILLLDGSDIS 266 (479)
Q Consensus 253 ~~L~~L~l~~~~l~ 266 (479)
++|+.|++++|.++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 35777777777665
No 98
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []. The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.
Probab=20.56 E-value=67 Score=23.12 Aligned_cols=15 Identities=40% Similarity=0.753 Sum_probs=8.6
Q ss_pred hHHHHHHHhcCCCCC
Q 011710 448 VDELEQWLMEGEDES 462 (479)
Q Consensus 448 ~~~l~~~~~~~~~~~ 462 (479)
...+-.|+.+++.++
T Consensus 66 ~~~fi~WL~eaeeE~ 80 (84)
T PF02020_consen 66 AQPFIEWLEEAEEES 80 (84)
T ss_dssp HHHHHHHHHHCC---
T ss_pred HHHHHHHHhccCccC
Confidence 356778987776665
No 99
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.39 E-value=38 Score=28.31 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=5.4
Q ss_pred HHHHHHHHhcCC
Q 011710 407 RDILDALARSRP 418 (479)
Q Consensus 407 ~~~~~~~~~~~p 418 (479)
...++.+....|
T Consensus 106 ~~~ieells~l~ 117 (184)
T KOG4032|consen 106 YAIIEELLSKLP 117 (184)
T ss_pred HHHHHHHHHHcc
Confidence 344444444444
Done!