Query 011710
Match_columns 479
No_of_seqs 289 out of 3177
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 13:46:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 1E-27 3.5E-32 245.3 33.2 233 175-426 287-539 (594)
2 3ogk_B Coronatine-insensitive 100.0 1.1E-27 3.8E-32 244.9 27.0 154 238-405 362-524 (592)
3 3ogk_B Coronatine-insensitive 100.0 6.2E-26 2.1E-30 232.0 33.6 374 12-424 65-519 (592)
4 2p1m_B Transport inhibitor res 100.0 9.6E-26 3.3E-30 230.7 34.4 368 13-422 59-510 (594)
5 1z7x_W Ribonuclease inhibitor; 99.9 2.3E-25 8E-30 220.6 32.6 365 5-415 13-420 (461)
6 1z7x_W Ribonuclease inhibitor; 99.9 1.6E-24 5.5E-29 214.6 29.7 360 20-425 2-405 (461)
7 2ca6_A RAN GTPase-activating p 99.9 2.7E-22 9.2E-27 193.7 24.6 264 148-421 29-333 (386)
8 2ca6_A RAN GTPase-activating p 99.9 2.1E-21 7E-26 187.4 21.4 240 173-425 28-310 (386)
9 4fmz_A Internalin; leucine ric 99.9 9.4E-22 3.2E-26 187.1 17.8 282 56-405 63-344 (347)
10 2ast_B S-phase kinase-associat 99.9 5.1E-21 1.8E-25 181.2 17.1 278 17-329 10-292 (336)
11 2ast_B S-phase kinase-associat 99.8 3.2E-19 1.1E-23 168.8 23.5 198 58-273 92-291 (336)
12 4fmz_A Internalin; leucine ric 99.8 4.2E-20 1.4E-24 175.7 14.8 282 57-406 42-323 (347)
13 3v47_A TOLL-like receptor 5B a 99.8 8.9E-22 3E-26 194.5 0.7 181 203-405 212-406 (455)
14 2id5_A Lingo-1, leucine rich r 99.8 4.9E-21 1.7E-25 190.3 0.0 301 58-405 31-331 (477)
15 1o6v_A Internalin A; bacterial 99.8 1.6E-18 5.5E-23 171.4 17.4 55 58-126 89-143 (466)
16 1o6v_A Internalin A; bacterial 99.8 4.7E-19 1.6E-23 175.2 13.3 279 55-405 108-386 (466)
17 3v47_A TOLL-like receptor 5B a 99.8 1.9E-20 6.6E-25 184.9 1.2 108 279-405 275-382 (455)
18 3t6q_A CD180 antigen; protein- 99.8 2.2E-20 7.4E-25 191.4 -1.5 141 249-406 372-512 (606)
19 3vq2_A TLR4, TOLL-like recepto 99.8 5.8E-21 2E-25 195.6 -6.5 137 9-165 20-166 (606)
20 2z63_A TOLL-like receptor 4, v 99.8 6.1E-21 2.1E-25 194.1 -6.7 159 226-405 345-505 (570)
21 2id5_A Lingo-1, leucine rich r 99.8 2.4E-20 8.3E-25 185.3 -2.7 321 10-388 21-341 (477)
22 2z7x_B TOLL-like receptor 1, v 99.7 2.5E-18 8.5E-23 172.7 11.1 106 56-188 42-149 (520)
23 3rgz_A Protein brassinosteroid 99.7 5.2E-20 1.8E-24 193.2 -1.6 310 56-405 220-549 (768)
24 2z81_A CD282 antigen, TOLL-lik 99.7 2E-18 7E-23 174.6 9.6 191 11-238 16-206 (549)
25 3t6q_A CD180 antigen; protein- 99.7 3E-20 1E-24 190.3 -4.3 301 60-405 255-558 (606)
26 3rgz_A Protein brassinosteroid 99.7 1.2E-19 4.3E-24 190.3 -0.9 235 148-405 415-715 (768)
27 2z81_A CD282 antigen, TOLL-lik 99.7 3.1E-18 1.1E-22 173.2 9.5 85 202-289 309-397 (549)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.1E-18 7.3E-23 174.8 7.3 157 225-405 350-508 (562)
29 1ziw_A TOLL-like receptor 3; i 99.7 4.1E-19 1.4E-23 184.4 0.9 339 11-405 15-392 (680)
30 3o6n_A APL1; leucine-rich repe 99.7 1.8E-18 6E-23 167.2 4.7 161 227-419 204-365 (390)
31 3goz_A Leucine-rich repeat-con 99.7 1.5E-16 5.1E-21 151.8 18.0 146 228-382 138-298 (362)
32 3o6n_A APL1; leucine-rich repe 99.7 1.2E-17 4.3E-22 161.2 9.4 271 57-390 91-361 (390)
33 3vq2_A TLR4, TOLL-like recepto 99.7 3.9E-19 1.3E-23 182.1 -1.3 182 201-405 348-532 (606)
34 4eco_A Uncharacterized protein 99.7 2.2E-19 7.4E-24 184.2 -5.5 35 365-405 564-598 (636)
35 3goz_A Leucine-rich repeat-con 99.7 3.1E-16 1.1E-20 149.6 16.0 269 64-354 3-304 (362)
36 3oja_B Anopheles plasmodium-re 99.7 4.8E-18 1.6E-22 173.2 3.0 211 150-405 146-356 (597)
37 3bz5_A Internalin-J, INLJ; leu 99.7 2.8E-17 9.6E-22 161.4 8.3 284 56-405 61-350 (457)
38 1ziw_A TOLL-like receptor 3; i 99.7 3.5E-18 1.2E-22 177.4 1.5 206 58-288 96-305 (680)
39 4ecn_A Leucine-rich repeat pro 99.7 2E-18 7E-23 180.4 -0.9 36 58-94 490-525 (876)
40 2z63_A TOLL-like receptor 4, v 99.7 7E-19 2.4E-23 178.9 -4.7 340 11-406 18-482 (570)
41 1xku_A Decorin; proteoglycan, 99.7 8.1E-18 2.8E-22 158.6 2.5 88 307-404 240-329 (330)
42 4eco_A Uncharacterized protein 99.7 1.5E-18 5.2E-23 177.9 -3.3 304 57-406 247-578 (636)
43 3oja_B Anopheles plasmodium-re 99.7 4.1E-17 1.4E-21 166.3 7.2 271 56-389 96-366 (597)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 5.3E-18 1.8E-22 171.8 0.2 133 250-405 350-484 (562)
45 3j0a_A TOLL-like receptor 5; m 99.7 2.6E-19 8.9E-24 189.8 -10.3 94 9-126 13-106 (844)
46 2z80_A TOLL-like receptor 2, v 99.7 4.7E-17 1.6E-21 154.8 5.7 66 331-405 247-312 (353)
47 4ecn_A Leucine-rich repeat pro 99.7 4E-18 1.4E-22 178.2 -2.4 298 56-405 512-838 (876)
48 3j0a_A TOLL-like receptor 5; m 99.6 6.9E-19 2.4E-23 186.5 -8.9 142 50-213 16-158 (844)
49 2z7x_B TOLL-like receptor 1, v 99.6 1.4E-15 4.6E-20 152.8 13.0 174 204-405 303-479 (520)
50 3bz5_A Internalin-J, INLJ; leu 99.6 6.3E-17 2.2E-21 158.9 2.1 257 55-382 81-353 (457)
51 1xku_A Decorin; proteoglycan, 99.6 1.2E-16 4.1E-21 150.5 3.1 249 58-344 51-304 (330)
52 2ft3_A Biglycan; proteoglycan, 99.6 7.6E-18 2.6E-22 158.9 -5.3 183 201-405 145-331 (332)
53 2z80_A TOLL-like receptor 2, v 99.6 1.2E-16 4.2E-21 152.0 2.6 213 149-379 98-313 (353)
54 4g8a_A TOLL-like receptor 4; l 99.6 9.9E-18 3.4E-22 172.6 -5.6 111 278-405 468-578 (635)
55 2ft3_A Biglycan; proteoglycan, 99.5 6.3E-17 2.2E-21 152.6 -5.5 199 58-289 53-251 (332)
56 3o53_A Protein LRIM1, AGAP0063 99.5 4.9E-16 1.7E-20 145.4 0.6 260 61-404 12-272 (317)
57 3zyi_A Leucine-rich repeat-con 99.5 9.5E-16 3.2E-20 150.9 1.2 230 56-318 72-301 (452)
58 3zyj_A Leucine-rich repeat-con 99.5 8.4E-16 2.9E-20 150.7 0.8 230 56-318 61-290 (440)
59 3un9_A NLR family member X1; l 99.5 2.9E-13 9.9E-18 128.7 17.7 192 203-405 72-281 (372)
60 3zyj_A Leucine-rich repeat-con 99.5 2.4E-15 8E-20 147.5 3.4 247 60-344 44-290 (440)
61 3o53_A Protein LRIM1, AGAP0063 99.5 3.5E-16 1.2E-20 146.4 -3.1 237 145-421 28-265 (317)
62 3zyi_A Leucine-rich repeat-con 99.5 4.1E-15 1.4E-19 146.3 4.1 247 60-344 55-301 (452)
63 3un9_A NLR family member X1; l 99.5 3.5E-13 1.2E-17 128.2 16.3 178 227-415 71-261 (372)
64 1ozn_A Reticulon 4 receptor; N 99.5 1.7E-14 5.7E-19 132.8 5.4 59 58-126 31-89 (285)
65 2z66_A Variable lymphocyte rec 99.5 2E-16 6.9E-21 147.4 -8.0 181 202-405 77-259 (306)
66 1ogq_A PGIP-2, polygalacturona 99.5 2E-16 6.9E-21 147.6 -8.0 108 59-188 50-160 (313)
67 1ozn_A Reticulon 4 receptor; N 99.5 4E-15 1.4E-19 137.0 0.2 160 225-405 77-236 (285)
68 2z66_A Variable lymphocyte rec 99.5 1E-15 3.6E-20 142.5 -4.2 108 58-187 27-136 (306)
69 1jl5_A Outer protein YOPM; leu 99.5 1.3E-13 4.6E-18 135.0 9.9 259 58-405 110-368 (454)
70 3g06_A SSPH2 (leucine-rich rep 99.4 1.9E-13 6.6E-18 138.3 10.3 242 58-385 60-301 (622)
71 3g06_A SSPH2 (leucine-rich rep 99.4 4.6E-13 1.6E-17 135.5 12.6 256 59-405 40-295 (622)
72 1ogq_A PGIP-2, polygalacturona 99.4 3.7E-16 1.3E-20 145.8 -10.3 158 84-266 50-210 (313)
73 4fcg_A Uncharacterized protein 99.4 6.1E-15 2.1E-19 138.4 -2.0 126 202-343 182-311 (328)
74 3oja_A Leucine-rich immune mol 99.4 3.7E-14 1.3E-18 140.4 3.4 166 84-288 34-200 (487)
75 3oja_A Leucine-rich immune mol 99.4 3.8E-15 1.3E-19 147.5 -4.2 238 115-401 32-269 (487)
76 4g8a_A TOLL-like receptor 4; l 99.4 5.1E-15 1.7E-19 152.3 -3.7 143 11-188 42-184 (635)
77 1wwl_A Monocyte differentiatio 99.4 6.1E-14 2.1E-18 130.8 3.9 253 58-347 42-309 (312)
78 3e4g_A ATP synthase subunit S, 99.4 3.4E-13 1.2E-17 111.7 7.4 93 253-350 61-156 (176)
79 3e4g_A ATP synthase subunit S, 99.4 6.2E-13 2.1E-17 110.1 8.3 109 307-424 61-173 (176)
80 1h6u_A Internalin H; cell adhe 99.4 3.8E-13 1.3E-17 125.0 7.6 103 150-266 40-142 (308)
81 1wwl_A Monocyte differentiatio 99.4 8.6E-15 2.9E-19 136.6 -4.1 115 149-266 93-214 (312)
82 1jl5_A Outer protein YOPM; leu 99.4 1.3E-12 4.4E-17 128.1 10.7 259 57-405 89-348 (454)
83 4glp_A Monocyte differentiatio 99.4 7.2E-14 2.5E-18 130.2 1.5 231 60-347 65-307 (310)
84 4fcg_A Uncharacterized protein 99.4 4.7E-14 1.6E-18 132.3 0.2 221 58-316 80-310 (328)
85 1h6u_A Internalin H; cell adhe 99.3 5.7E-12 1.9E-16 117.0 11.4 189 58-290 40-228 (308)
86 2z62_A TOLL-like receptor 4, v 99.3 2.9E-13 9.9E-18 123.9 0.2 59 58-126 27-85 (276)
87 2o6q_A Variable lymphocyte rec 99.3 2.3E-13 8E-18 124.0 -0.5 160 224-405 57-216 (270)
88 4glp_A Monocyte differentiatio 99.3 8.8E-13 3E-17 122.8 2.8 229 150-405 63-305 (310)
89 2o6q_A Variable lymphocyte rec 99.3 9.7E-13 3.3E-17 119.9 2.6 104 59-187 16-119 (270)
90 2z62_A TOLL-like receptor 4, v 99.3 1.7E-13 5.7E-18 125.5 -2.9 110 151-266 28-137 (276)
91 4ezg_A Putative uncharacterize 99.2 7E-12 2.4E-16 108.3 4.6 104 176-289 43-146 (197)
92 1h6t_A Internalin B; cell adhe 99.2 1.1E-11 3.8E-16 114.0 5.7 101 175-289 44-144 (291)
93 2xwt_C Thyrotropin receptor; s 99.2 1.5E-12 5.3E-17 116.3 -0.6 185 57-266 29-218 (239)
94 2ra8_A Uncharacterized protein 99.2 9.6E-11 3.3E-15 110.4 11.6 155 224-390 168-329 (362)
95 4ezg_A Putative uncharacterize 99.2 2.5E-11 8.6E-16 104.8 6.9 149 203-378 44-192 (197)
96 3rfs_A Internalin B, repeat mo 99.2 7.7E-12 2.6E-16 114.0 3.5 176 58-289 40-215 (272)
97 3rfs_A Internalin B, repeat mo 99.2 4.8E-12 1.7E-16 115.4 2.0 178 175-378 39-216 (272)
98 1p9a_G Platelet glycoprotein I 99.1 1.2E-11 3.9E-16 113.8 2.9 196 58-318 9-206 (290)
99 1h6t_A Internalin B; cell adhe 99.1 5.3E-11 1.8E-15 109.5 7.1 104 150-267 45-148 (291)
100 1m9s_A Internalin B; cell inva 99.1 2.7E-11 9.1E-16 122.5 5.1 169 174-378 40-208 (605)
101 2xwt_C Thyrotropin receptor; s 99.1 1.9E-12 6.5E-17 115.7 -3.1 202 84-344 31-237 (239)
102 2ra8_A Uncharacterized protein 99.1 2.7E-10 9.2E-15 107.4 10.7 138 227-378 192-341 (362)
103 1p9a_G Platelet glycoprotein I 99.1 2E-11 6.9E-16 112.2 1.5 156 175-346 53-208 (290)
104 1io0_A Tropomodulin; LRR prote 99.0 3.8E-09 1.3E-13 89.8 14.4 91 307-405 65-162 (185)
105 1io0_A Tropomodulin; LRR prote 99.0 3.2E-09 1.1E-13 90.3 13.9 70 307-384 93-167 (185)
106 1m9s_A Internalin B; cell inva 99.0 1.1E-10 3.8E-15 117.9 5.3 168 149-344 41-208 (605)
107 3m19_A Variable lymphocyte rec 99.0 4.4E-11 1.5E-15 107.6 0.2 155 204-405 36-190 (251)
108 3m19_A Variable lymphocyte rec 99.0 5E-11 1.7E-15 107.2 0.2 127 152-289 15-141 (251)
109 4ay9_X Follicle-stimulating ho 98.9 6.4E-11 2.2E-15 112.1 -3.1 227 58-316 29-255 (350)
110 1xeu_A Internalin C; cellular 98.8 8.3E-10 2.8E-14 99.8 3.0 58 203-266 41-98 (263)
111 2je0_A Acidic leucine-rich nuc 98.8 1.8E-09 6.2E-14 88.4 4.6 110 151-267 17-127 (149)
112 2je0_A Acidic leucine-rich nuc 98.8 5.6E-10 1.9E-14 91.5 1.4 40 227-267 16-56 (149)
113 1xeu_A Internalin C; cellular 98.8 2.6E-09 8.8E-14 96.5 4.1 56 226-288 39-94 (263)
114 2ell_A Acidic leucine-rich nuc 98.8 1.2E-09 4.1E-14 91.5 1.8 84 307-405 71-158 (168)
115 3sb4_A Hypothetical leucine ri 98.8 9.3E-10 3.2E-14 103.2 0.7 255 58-340 24-328 (329)
116 1dce_A Protein (RAB geranylger 98.8 2.3E-10 7.8E-15 114.9 -3.7 101 178-289 442-543 (567)
117 2ell_A Acidic leucine-rich nuc 98.7 1.9E-09 6.5E-14 90.3 1.4 131 151-289 24-157 (168)
118 2xot_A Amphoterin-induced prot 98.7 2.2E-09 7.5E-14 102.0 0.2 108 177-289 39-146 (361)
119 2xot_A Amphoterin-induced prot 98.7 2.4E-09 8.2E-14 101.7 0.1 135 150-289 38-173 (361)
120 4ay9_X Follicle-stimulating ho 98.6 2.4E-10 8.2E-15 108.2 -7.5 227 150-404 29-256 (350)
121 2v9t_B SLIT homolog 2 protein 98.6 5.1E-09 1.7E-13 91.9 1.0 41 225-266 53-93 (220)
122 3sb4_A Hypothetical leucine ri 98.6 1.1E-08 3.7E-13 95.8 3.2 127 176-314 201-328 (329)
123 3cvr_A Invasion plasmid antige 98.6 5.5E-08 1.9E-12 97.2 8.4 167 58-275 79-252 (571)
124 3e6j_A Variable lymphocyte rec 98.6 8.3E-09 2.8E-13 91.1 2.0 38 331-378 133-170 (229)
125 1pgv_A TMD-1, tropomodulin TMD 98.6 7.1E-07 2.4E-11 75.2 12.4 121 278-405 40-168 (197)
126 2v70_A SLIT-2, SLIT homolog 2 98.6 8.4E-09 2.9E-13 90.5 0.4 39 226-265 103-141 (220)
127 2v9t_B SLIT homolog 2 protein 98.6 8.9E-09 3E-13 90.3 0.2 132 228-405 32-163 (220)
128 3cvr_A Invasion plasmid antige 98.5 4.3E-08 1.5E-12 98.0 5.1 174 60-289 60-240 (571)
129 3e6j_A Variable lymphocyte rec 98.5 1.7E-08 5.7E-13 89.2 1.6 83 307-405 88-170 (229)
130 2o6s_A Variable lymphocyte rec 98.5 1.9E-08 6.6E-13 87.3 1.9 40 226-266 50-89 (208)
131 1a9n_A U2A', U2A'; complex (nu 98.5 3.2E-08 1.1E-12 83.4 3.2 40 226-266 86-126 (176)
132 2o6s_A Variable lymphocyte rec 98.5 1.6E-08 5.4E-13 87.9 1.3 39 226-265 98-136 (208)
133 1dce_A Protein (RAB geranylger 98.5 4.9E-09 1.7E-13 105.3 -3.8 123 204-340 442-567 (567)
134 2v70_A SLIT-2, SLIT homolog 2 98.5 2.4E-08 8.4E-13 87.5 1.1 42 224-266 77-118 (220)
135 1pgv_A TMD-1, tropomodulin TMD 98.5 3.1E-06 1.1E-10 71.3 13.9 66 307-378 98-168 (197)
136 1a9n_A U2A', U2A'; complex (nu 98.5 7E-08 2.4E-12 81.3 3.3 105 229-343 43-150 (176)
137 1ds9_A Outer arm dynein; leuci 98.4 1.7E-08 6E-13 86.9 -1.8 13 366-378 139-151 (198)
138 1ds9_A Outer arm dynein; leuci 98.3 5.3E-08 1.8E-12 83.8 -0.1 107 223-343 43-150 (198)
139 4fdw_A Leucine rich hypothetic 98.1 6.8E-08 2.3E-12 92.6 -4.3 243 82-378 111-356 (401)
140 2wfh_A SLIT homolog 2 protein 98.1 8.7E-07 3E-11 75.7 2.9 40 226-266 76-115 (193)
141 1w8a_A SLIT protein; signaling 98.1 3.6E-07 1.2E-11 78.1 0.3 40 226-266 76-115 (192)
142 2wfh_A SLIT homolog 2 protein 98.1 1.9E-06 6.5E-11 73.6 3.5 80 204-288 32-111 (193)
143 1w8a_A SLIT protein; signaling 98.0 9.2E-07 3.1E-11 75.5 0.3 89 174-266 51-139 (192)
144 2o6r_A Variable lymphocyte rec 98.0 2.4E-06 8.3E-11 71.8 2.7 40 226-266 50-89 (177)
145 2o6r_A Variable lymphocyte rec 98.0 2E-06 6.8E-11 72.3 2.1 62 225-289 73-134 (177)
146 4fdw_A Leucine rich hypothetic 97.9 1.2E-06 4.3E-11 83.8 -1.4 215 60-316 158-379 (401)
147 4fs7_A Uncharacterized protein 97.8 6.1E-07 2.1E-11 86.1 -4.7 148 227-404 229-376 (394)
148 4b8c_D Glucose-repressible alc 97.8 2.4E-06 8.2E-11 88.5 -1.5 12 366-377 358-369 (727)
149 4fs7_A Uncharacterized protein 97.7 5.4E-07 1.9E-11 86.5 -6.8 165 202-399 229-393 (394)
150 2r9u_A Variable lymphocyte rec 97.7 1.7E-05 5.8E-10 66.3 2.8 40 226-266 55-94 (174)
151 3g39_A Variable lymphocyte rec 97.7 1.8E-05 6E-10 66.0 2.8 39 226-265 52-90 (170)
152 4b8c_D Glucose-repressible alc 97.6 9.5E-06 3.2E-10 84.0 0.8 111 223-349 219-331 (727)
153 4gt6_A Cell surface protein; l 97.5 9.1E-06 3.1E-10 77.9 -1.4 101 60-186 65-169 (394)
154 4gt6_A Cell surface protein; l 97.3 0.00019 6.3E-09 68.7 4.6 282 58-403 86-387 (394)
155 3g39_A Variable lymphocyte rec 97.3 0.00013 4.5E-09 60.5 3.1 64 201-266 52-115 (170)
156 2r9u_A Variable lymphocyte rec 97.2 0.00014 4.9E-09 60.6 3.1 64 201-266 55-118 (174)
157 2ifg_A High affinity nerve gro 97.2 0.00014 4.9E-09 68.2 2.6 39 226-265 54-92 (347)
158 2ifg_A High affinity nerve gro 97.1 0.00027 9.1E-09 66.3 3.5 102 207-317 12-113 (347)
159 3rw6_A Nuclear RNA export fact 97.0 0.0022 7.7E-08 57.0 8.2 64 200-266 167-233 (267)
160 3rw6_A Nuclear RNA export fact 96.7 0.0026 8.8E-08 56.6 6.2 63 174-238 167-230 (267)
161 4h09_A Hypothetical leucine ri 92.8 0.04 1.4E-06 52.0 2.1 128 149-288 215-342 (379)
162 4h09_A Hypothetical leucine ri 92.0 0.034 1.1E-06 52.5 0.4 131 113-263 213-343 (379)
163 3rfe_A Platelet glycoprotein I 74.3 2.2 7.6E-05 32.8 3.1 34 229-263 32-65 (130)
164 2iu1_A EIF5, eukaryotic transl 74.2 0.74 2.5E-05 38.7 0.4 17 448-464 144-160 (208)
165 3rfe_A Platelet glycoprotein I 69.8 1.5 5.1E-05 33.8 1.2 35 368-405 32-66 (130)
166 2ful_A EIF-5, eukaryotic trans 42.8 8.1 0.00028 31.5 1.2 15 448-462 150-164 (177)
167 3bbo_G Ribosomal protein L4; l 38.1 8.9 0.0003 33.8 0.8 13 443-455 247-259 (293)
168 2lz0_A Uncharacterized protein 31.3 16 0.00055 26.4 1.1 37 224-262 16-52 (100)
169 1paq_A Translation initiation 25.3 27 0.00093 28.7 1.6 15 448-462 170-184 (189)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=1e-27 Score=245.34 Aligned_cols=233 Identities=19% Similarity=0.213 Sum_probs=189.7
Q ss_pred hCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhh-cCCCCCEEec--------CCCCCCChHH
Q 011710 175 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDL--------RDCKNLGDEA 245 (479)
Q Consensus 175 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l--------~~~~~l~~~~ 245 (479)
.+++|++|++++|. +++..+..+...+++|++|++.+| +++.++..+. .+++|+.|++ ..|..+++.+
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 45677777777766 666667767777888888888876 5555555554 5889999988 3456778777
Q ss_pred HHhhh-cCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecC-----CCCCCC----HHHHHHHhccCCCCCccEEecC
Q 011710 246 LRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR-----GCKRLT----DKCISALFDGTSKLQLQELDLS 315 (479)
Q Consensus 246 ~~~l~-~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~-----~~~~l~----~~~~~~l~~~~~~~~L~~L~l~ 315 (479)
+..+. .+++|+.|.+..+.+++.++..+.. .+++|+.|+++ +|..++ +.++..++..+ ++|++|+++
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~--~~L~~L~L~ 440 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIAR-NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC--KDLRRLSLS 440 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHHH-HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC--TTCCEEECC
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHHh-hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC--CCccEEeec
Confidence 77766 5899999988888999888888876 68999999998 677888 77877777666 899999997
Q ss_pred CCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCC
Q 011710 316 NLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPR 395 (479)
Q Consensus 316 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~ 395 (479)
+ .+++.++..+...+++|+.|++++| .+++.++..+.. .+++|+.|++++|+ +++.++..+.. .+++
T Consensus 441 ~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~--------~~~~L~~L~L~~n~-~~~~~~~~~~~-~l~~ 507 (594)
T 2p1m_B 441 G--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLS--------GCDSLRKLEIRDCP-FGDKALLANAS-KLET 507 (594)
T ss_dssp S--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHH--------HCTTCCEEEEESCS-CCHHHHHHTGG-GGGG
T ss_pred C--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHh--------cCCCcCEEECcCCC-CcHHHHHHHHH-hCCC
Confidence 6 7889998888888999999999999 789999998877 79999999999999 69888877765 6899
Q ss_pred ccEEEecCCC-CHHHHHHHHhcCCCceeeccC
Q 011710 396 LRWLGVTGSV-NRDILDALARSRPFLNVACRG 426 (479)
Q Consensus 396 L~~L~l~~~~-~~~~~~~~~~~~p~l~~~~~~ 426 (479)
|+.|++++|+ ....+..+....|.+++....
T Consensus 508 L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 508 MRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp SSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred CCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 9999999998 566788888889999776554
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.1e-27 Score=244.95 Aligned_cols=154 Identities=18% Similarity=0.235 Sum_probs=70.9
Q ss_pred CCCCChHHHHhhh-cCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCC---CCCCCH----HHHHHHhccCCCCCc
Q 011710 238 CKNLGDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG---CKRLTD----KCISALFDGTSKLQL 309 (479)
Q Consensus 238 ~~~l~~~~~~~l~-~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~---~~~l~~----~~~~~l~~~~~~~~L 309 (479)
|+.+++.++..+. .+++|+.|++..+.+++.++..+.. .+++|++|++++ |+.+++ .++..+...+ ++|
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~--~~L 438 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC--KKL 438 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC--TTC
T ss_pred cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh-hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC--CCC
Confidence 4444444433322 3445555555444444444444444 345555555541 333332 2333333333 455
Q ss_pred cEEecCCCC-CCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHh
Q 011710 310 QELDLSNLP-HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 388 (479)
Q Consensus 310 ~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l 388 (479)
++|+++.|. .+++.++..+...+++|+.|++++| .+++.++..+.. .+++|++|+|++|. +++.++..+
T Consensus 439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~--------~~~~L~~L~l~~n~-l~~~~~~~~ 508 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSR--------GCPNLQKLEMRGCC-FSERAIAAA 508 (592)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHT--------CCTTCCEEEEESCC-CBHHHHHHH
T ss_pred CEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHh--------cCcccCeeeccCCC-CcHHHHHHH
Confidence 555554432 2444444444444555555555544 445544444444 44555555555555 454444443
Q ss_pred hccCCCCccEEEecCCC
Q 011710 389 KKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 389 ~~~~~~~L~~L~l~~~~ 405 (479)
.. .+++|+.|++++|.
T Consensus 509 ~~-~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 509 VT-KLPSLRYLWVQGYR 524 (592)
T ss_dssp HH-HCSSCCEEEEESCB
T ss_pred HH-hcCccCeeECcCCc
Confidence 32 34555555555554
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=6.2e-26 Score=232.04 Aligned_cols=374 Identities=17% Similarity=0.195 Sum_probs=248.1
Q ss_pred HHHHHHhhhhccceeeccccchhhhhhccCCCCCCCCCCCccC-------CCCCCCCcEEEeecCccChhHHHHHHHcCC
Q 011710 12 FARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIR-------PSILPGIQKLCLSVDYITDAMVGTISQGLV 84 (479)
Q Consensus 12 ~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 84 (479)
...++...| ++++|++++.+........+. .|..+. ...+++|++|+|+.+.+++..+..+...++
T Consensus 65 ~~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~------~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 137 (592)
T 3ogk_B 65 PDRLSRRFP-NLRSLKLKGKPRAAMFNLIPE------NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA 137 (592)
T ss_dssp HHHHHHHCT-TCSEEEEECSCGGGGGTCSCT------TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG
T ss_pred hHHHHHhCC-CCeEEEecCCcchhhcccccc------cccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc
Confidence 345666777 799999986554322222111 111110 113788999999988888888888876677
Q ss_pred C-ccEEeccCCCCCCCccccccchHHHHhhh-cCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCC
Q 011710 85 S-LTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFC 162 (479)
Q Consensus 85 ~-L~~L~l~~~~~l~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 162 (479)
+ |++|++++|. .++..++..+. .|++|++|+++.+. +.......+..+...+++|+.|+++++
T Consensus 138 ~~L~~L~L~~~~--------~~~~~~l~~~~~~~~~L~~L~L~~~~------~~~~~~~~l~~~~~~~~~L~~L~L~~n- 202 (592)
T 3ogk_B 138 DDLETLKLDKCS--------GFTTDGLLSIVTHCRKIKTLLMEESS------FSEKDGKWLHELAQHNTSLEVLNFYMT- 202 (592)
T ss_dssp GGCCEEEEESCE--------EEEHHHHHHHHHHCTTCSEEECTTCE------EECCCSHHHHHHHHHCCCCCEEECTTC-
T ss_pred ccCcEEECcCCC--------CcCHHHHHHHHhhCCCCCEEECcccc------ccCcchhHHHHHHhcCCCccEEEeecc-
Confidence 6 9999998884 35555666554 78888888887531 111122234445556677777777653
Q ss_pred cc---CHHHHHHHHHhCCCCceEEecCCCCCC-----------------------------------------------H
Q 011710 163 RV---TDTGFKTILHSCSNLYKLRVSHGTQLT-----------------------------------------------D 192 (479)
Q Consensus 163 ~l---~~~~~~~l~~~~~~L~~L~l~~~~~~~-----------------------------------------------~ 192 (479)
.+ ....+..+...+++|+.|+++++.... .
T Consensus 203 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 282 (592)
T 3ogk_B 203 EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282 (592)
T ss_dssp CCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT
T ss_pred CCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch
Confidence 33 244455555666666666666543211 1
Q ss_pred HHHHHHHhcCCCccEEEccCCCCCCHHHHHH-hhcCCCCCEEecCCCCCCChHHHHhh-hcCCCCcEEEccC--------
Q 011710 193 LVFHDISATSLSLTHVCLRWCNLLTNHAIKS-LASNTGIKVLDLRDCKNLGDEALRAI-SSLPQLKILLLDG-------- 262 (479)
Q Consensus 193 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~-------- 262 (479)
..+..+...+++|++|++++|. ++...+.. +..+++|+.|++++ .+.+.++..+ ..+++|++|++++
T Consensus 283 ~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 283 NEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp TTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred hHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccc
Confidence 1122233345567777777754 55555432 45677777777763 3455555444 3677788888873
Q ss_pred ---CCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecC---CCCCCCH----HHHHHHHhcC
Q 011710 263 ---SDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLS---NLPHLSD----NGILTLATCR 332 (479)
Q Consensus 263 ---~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~---~~~~l~~----~~~~~l~~~~ 332 (479)
+.+++.++..+.. .+++|++|.+ .|..+++.++..++..+ ++|++|+++ .|+.+++ .++..+...|
T Consensus 360 ~~~~~~~~~~~~~l~~-~~~~L~~L~l-~~~~l~~~~~~~l~~~~--~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQ-GCQELEYMAV-YVSDITNESLESIGTYL--KNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp STTCCCCHHHHHHHHH-HCTTCSEEEE-EESCCCHHHHHHHHHHC--CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred cccCccCHHHHHHHHh-hCccCeEEEe-ecCCccHHHHHHHHhhC--CCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 4677777776666 6788888887 45667777777766555 788888886 3456664 4677777778
Q ss_pred CCCcEEecCCCC-CCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC-CHHHH
Q 011710 333 VPISELRVRQCP-LIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV-NRDIL 410 (479)
Q Consensus 333 ~~L~~L~l~~~~-~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~-~~~~~ 410 (479)
++|+.|+++.|. .+++.++..+.. .+++|+.|++++|. +++.++..+.. .+++|++|++++|. ....+
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~~~--------~~~~L~~L~L~~n~-l~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYIGQ--------YSPNVRWMLLGYVG-ESDEGLMEFSR-GCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHHHH--------SCTTCCEEEECSCC-SSHHHHHHHHT-CCTTCCEEEEESCCCBHHHH
T ss_pred CCCCEEEEecCCCCccHHHHHHHHH--------hCccceEeeccCCC-CCHHHHHHHHh-cCcccCeeeccCCCCcHHHH
Confidence 889999998764 378888888887 78999999999998 99988887766 68999999999998 55667
Q ss_pred HHHHhcCCCceeec
Q 011710 411 DALARSRPFLNVAC 424 (479)
Q Consensus 411 ~~~~~~~p~l~~~~ 424 (479)
..+....|.++...
T Consensus 506 ~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 506 AAAVTKLPSLRYLW 519 (592)
T ss_dssp HHHHHHCSSCCEEE
T ss_pred HHHHHhcCccCeeE
Confidence 77777788876554
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=9.6e-26 Score=230.73 Aligned_cols=368 Identities=17% Similarity=0.225 Sum_probs=200.1
Q ss_pred HHHHHhhhhccceeeccccchhhhhhccCCCCCCCCCCCccC-------CCCCCCCcEEEeecCccChhHHHHHHHcCCC
Q 011710 13 ARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIR-------PSILPGIQKLCLSVDYITDAMVGTISQGLVS 85 (479)
Q Consensus 13 ~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 85 (479)
..++...| .++.|+++..+......+. ...|.... ...+++|++|+|+++.+++..+..+.+.+++
T Consensus 59 ~~~~~~~~-~L~~L~L~~~~~~~~~~l~------~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 131 (594)
T 2p1m_B 59 ATVIRRFP-KVRSVELKGKPHFADFNLV------PDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKN 131 (594)
T ss_dssp HHHHHHCT-TCCEEEEECSCGGGGGTCS------CTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTT
T ss_pred HHHHhhCC-CceEEeccCCCchhhcccc------cccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCC
Confidence 34556666 8888888865432211111 01121111 1237899999999888999888888777999
Q ss_pred ccEEeccCCCCCCCccccccchHHHHhhh-cCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCC-c
Q 011710 86 LTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFC-R 163 (479)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~ 163 (479)
|++|++++|. .++..++..+. .+++|++|+++.+. +.......+..+...+++|+.|++++|. .
T Consensus 132 L~~L~L~~~~--------~~~~~~l~~~~~~~~~L~~L~L~~~~------i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 197 (594)
T 2p1m_B 132 FKVLVLSSCE--------GFSTDGLAAIAATCRNLKELDLRESD------VDDVSGHWLSHFPDTYTSLVSLNISCLASE 197 (594)
T ss_dssp CCEEEEESCE--------EEEHHHHHHHHHHCTTCCEEECTTCE------EECCCGGGGGGSCTTCCCCCEEECTTCCSC
T ss_pred CcEEeCCCcC--------CCCHHHHHHHHHhCCCCCEEeCcCCc------cCCcchHHHHHHhhcCCcCcEEEecccCCc
Confidence 9999999883 46666666665 78889999887542 1111111222222344555555555542 2
Q ss_pred cCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcC-----------------------------------------
Q 011710 164 VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATS----------------------------------------- 202 (479)
Q Consensus 164 l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----------------------------------------- 202 (479)
++...+..+...+++|++|++++|..+. .+..+...+
T Consensus 198 ~~~~~l~~l~~~~~~L~~L~L~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~ 275 (594)
T 2p1m_B 198 VSFSALERLVTRCPNLKSLKLNRAVPLE--KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCTTSCHH--HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBT
T ss_pred CCHHHHHHHHHhCCCCcEEecCCCCcHH--HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcc
Confidence 4444444444455555555555542221 123333333
Q ss_pred -------------CCccEEEccCCCCCCHHHHHH-hhcCCCCCEEecCCCCCCChHHHHhhh-cCCCCcEEEc-------
Q 011710 203 -------------LSLTHVCLRWCNLLTNHAIKS-LASNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLL------- 260 (479)
Q Consensus 203 -------------~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l------- 260 (479)
++|++|++++|. +++..+.. +..+++|++|++++| +++.++..+. .+++|++|++
T Consensus 276 ~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g 352 (594)
T 2p1m_B 276 AVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFV 352 (594)
T ss_dssp CCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTC
T ss_pred cchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccc
Confidence 444445554443 44433332 224455555555443 3333333332 3455555555
Q ss_pred --cCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecC-----CCCCCC----HHHHHHHH
Q 011710 261 --DGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLS-----NLPHLS----DNGILTLA 329 (479)
Q Consensus 261 --~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~-----~~~~l~----~~~~~~l~ 329 (479)
..+.+++.++..+.. .+++|++|.+ +|..+++.++..++..+ ++|++|+++ +|+.++ +.++..+.
T Consensus 353 ~~~~~~l~~~~l~~l~~-~~~~L~~L~~-~~~~l~~~~~~~l~~~~--~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~ 428 (594)
T 2p1m_B 353 MEPNVALTEQGLVSVSM-GCPKLESVLY-FCRQMTNAALITIARNR--PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV 428 (594)
T ss_dssp SSCSSCCCHHHHHHHHH-HCTTCCEEEE-EESCCCHHHHHHHHHHC--TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHH-hchhHHHHHH-hcCCcCHHHHHHHHhhC--CCcceeEeecccCCCcccccCCchhhHHHHHH
Confidence 122445555544444 4555555533 33445555554444333 566666666 455555 55555555
Q ss_pred hcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC-CHH
Q 011710 330 TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV-NRD 408 (479)
Q Consensus 330 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~-~~~ 408 (479)
..+++|+.|++++ .+++.++..+.. .+++|+.|++++|. +++.++..+.. .+++|+.|++++|. ...
T Consensus 429 ~~~~~L~~L~L~~--~l~~~~~~~l~~--------~~~~L~~L~L~~~~-i~~~~~~~l~~-~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 429 EHCKDLRRLSLSG--LLTDKVFEYIGT--------YAKKMEMLSVAFAG-DSDLGMHHVLS-GCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp HHCTTCCEEECCS--SCCHHHHHHHHH--------HCTTCCEEEEESCC-SSHHHHHHHHH-HCTTCCEEEEESCSCCHH
T ss_pred hhCCCccEEeecC--cccHHHHHHHHH--------hchhccEeeccCCC-CcHHHHHHHHh-cCCCcCEEECcCCCCcHH
Confidence 5666666666644 456666666655 46667777777776 66666666643 46777777777776 333
Q ss_pred HHHHHHhcCCCcee
Q 011710 409 ILDALARSRPFLNV 422 (479)
Q Consensus 409 ~~~~~~~~~p~l~~ 422 (479)
.+..+....|.++.
T Consensus 497 ~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 497 ALLANASKLETMRS 510 (594)
T ss_dssp HHHHTGGGGGGSSE
T ss_pred HHHHHHHhCCCCCE
Confidence 44444444555543
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.3e-25 Score=220.61 Aligned_cols=365 Identities=20% Similarity=0.251 Sum_probs=221.1
Q ss_pred ccccchhHHHHHHhhhhccceeeccccchh--h---hhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHH
Q 011710 5 SLFLRHNFARVWALASEKLTSLEIGYISSV--M---VTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTI 79 (479)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l 79 (479)
..+.+..+..++..+| +|++|++++.... . +... ...+++|++|+++++.+++..+..+
T Consensus 13 ~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~---------------l~~~~~L~~L~Ls~n~l~~~~~~~l 76 (461)
T 1z7x_W 13 EELSDARWAELLPLLQ-QCQVVRLDDCGLTEARCKDISSA---------------LRVNPALAELNLRSNELGDVGVHCV 76 (461)
T ss_dssp CCCCHHHHHHHHHHHT-TCSEEEEESSCCCHHHHHHHHHH---------------HHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred cccCchhHHHHHhhcC-CccEEEccCCCCCHHHHHHHHHH---------------HHhCCCcCEEeCCCCcCChHHHHHH
Confidence 3456666777788888 9999999854322 1 1122 2336788888888888888777777
Q ss_pred HHcCC----CccEEeccCCCCCCCccccccchHH----HHhhhcCCCccEEecccccccccccccccchHHHHHHHHc--
Q 011710 80 SQGLV----SLTHLDLRDAPLIEPRITFDLTNSG----LQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADK-- 149 (479)
Q Consensus 80 ~~~~~----~L~~L~l~~~~~l~~~~~~~~~~~~----l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~-- 149 (479)
...++ +|++|++++|. +++.+ ...+..+++|++|++++ +.+.+.++..+...
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~---------i~~~~~~~l~~~l~~~~~L~~L~Ls~---------n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCC---------LTGAGCGVLSSTLRTLPTLQELHLSD---------NLLGDAGLQLLCEGLL 138 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSC---------CBGGGHHHHHHHTTSCTTCCEEECCS---------SBCHHHHHHHHHHHHT
T ss_pred HHHHhhCCCceeEEEccCCC---------CCHHHHHHHHHHHccCCceeEEECCC---------CcCchHHHHHHHHHHh
Confidence 77676 68888888874 55433 33456788888888864 34555555544432
Q ss_pred --CCCCCeEEEcCCCccCHHH---HHHHHHhCCCCceEEecCCCCCCHHHHHHHHh----cCCCccEEEccCCCCCCHHH
Q 011710 150 --CASMESICLGGFCRVTDTG---FKTILHSCSNLYKLRVSHGTQLTDLVFHDISA----TSLSLTHVCLRWCNLLTNHA 220 (479)
Q Consensus 150 --~~~L~~L~l~~~~~l~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~ 220 (479)
.++|+.|++++| .++..+ +...+..+++|++|+++++. +.+.+...+.. ..++|++|++++| .++..+
T Consensus 139 ~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~ 215 (461)
T 1z7x_W 139 DPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDN 215 (461)
T ss_dssp STTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTH
T ss_pred cCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHH
Confidence 346888888775 555433 23334456778888887765 45444444433 3457777777775 454433
Q ss_pred H----HHhhcCCCCCEEecCCCCCCChHHHHhhh-----cCCCCcEEEccCCCCchHHHHHHHh--hcCCCccEEecCCC
Q 011710 221 I----KSLASNTGIKVLDLRDCKNLGDEALRAIS-----SLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGC 289 (479)
Q Consensus 221 ~----~~l~~~~~L~~L~l~~~~~l~~~~~~~l~-----~l~~L~~L~l~~~~l~~~~l~~l~~--~~~~~L~~L~l~~~ 289 (479)
. ..+..+++|++|++++| .+++.+...+. .+++|+.|++++|.+++.+...+.. ..+++|++|+++++
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 2 23346777777777775 56555544332 4677777777777777665433322 13677777777774
Q ss_pred CCCCHHHHHHHhccC--CCCCccEEecCCCCCCCHHHHH---HHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCc
Q 011710 290 KRLTDKCISALFDGT--SKLQLQELDLSNLPHLSDNGIL---TLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRW 364 (479)
Q Consensus 290 ~~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~l~~~~~~---~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~ 364 (479)
.+++.+...+.... ..++|++|++++| .++..+.. .....+++|+.|++++| .+++.++..+...+..
T Consensus 295 -~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~---- 367 (461)
T 1z7x_W 295 -ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQ---- 367 (461)
T ss_dssp -CCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTS----
T ss_pred -CCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcC----
Confidence 46655554443321 1146777777775 55544332 22334677777777777 6676666666553321
Q ss_pred CCCCceEEEccCCCCCCHHHHHHhhc--cCCCCccEEEecCCC-CHHHHHHHHh
Q 011710 365 YGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV-NRDILDALAR 415 (479)
Q Consensus 365 ~~~~L~~L~l~~c~~i~~~~~~~l~~--~~~~~L~~L~l~~~~-~~~~~~~~~~ 415 (479)
..++|++|++++|. +++.+...+.. ..+++|++|++++|. ....+..+..
T Consensus 368 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~ 420 (461)
T 1z7x_W 368 PGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420 (461)
T ss_dssp TTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred CCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHH
Confidence 25577777777776 77644443322 126777777777776 3444444443
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.6e-24 Score=214.57 Aligned_cols=360 Identities=20% Similarity=0.221 Sum_probs=257.7
Q ss_pred hhccceeeccccc--hhhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHH---HHcCCCccEEeccCC
Q 011710 20 SEKLTSLEIGYIS--SVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTI---SQGLVSLTHLDLRDA 94 (479)
Q Consensus 20 p~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l---~~~~~~L~~L~l~~~ 94 (479)
|+.++.|++++.. ......+ ...+++|++|+++++.+++.....+ ...+++|++|++++|
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~---------------~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 66 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAEL---------------LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHH---------------HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred CccceehhhhhcccCchhHHHH---------------HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC
Confidence 5688999998443 2222222 2447899999999999988654443 446899999999998
Q ss_pred CCCCCccccccchHHHHhhh-cCC----CccEEecccccccccccccccchHH---HHHHHHcCCCCCeEEEcCCCccCH
Q 011710 95 PLIEPRITFDLTNSGLQQIN-QHG----KLKHLSLIRSQEFLITYFRRVNDLG---ILLMADKCASMESICLGGFCRVTD 166 (479)
Q Consensus 95 ~~l~~~~~~~~~~~~l~~l~-~~~----~L~~L~l~~~~~~~~~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~l~~ 166 (479)
. +++.++..+. .++ +|++|++++ +.+++.+ +......+++|+.|+++++ .+++
T Consensus 67 ~---------l~~~~~~~l~~~l~~~~~~L~~L~L~~---------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~ 127 (461)
T 1z7x_W 67 E---------LGDVGVHCVLQGLQTPSCKIQKLSLQN---------CCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGD 127 (461)
T ss_dssp C---------CHHHHHHHHHHTTCSTTCCCCEEECTT---------SCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHH
T ss_pred c---------CChHHHHHHHHHHhhCCCceeEEEccC---------CCCCHHHHHHHHHHHccCCceeEEECCCC-cCch
Confidence 4 6666666554 344 799999975 3455433 3344456889999999994 6887
Q ss_pred HHHHHHHHh----CCCCceEEecCCCCCCHHH---HHHHHhcCCCccEEEccCCCCCCHHHHHHhh-----cCCCCCEEe
Q 011710 167 TGFKTILHS----CSNLYKLRVSHGTQLTDLV---FHDISATSLSLTHVCLRWCNLLTNHAIKSLA-----SNTGIKVLD 234 (479)
Q Consensus 167 ~~~~~l~~~----~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~ 234 (479)
.++..+... .++|++|++++|. ++..+ +......+++|++|+++++ .+++.+...+. ..++|++|+
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEE
Confidence 767666554 4579999999885 44433 3444556889999999995 57776666554 367999999
Q ss_pred cCCCCCCChHH----HHhhhcCCCCcEEEccCCCCchHHHHHHHhh---cCCCccEEecCCCCCCCHHHHHHHhcc-CCC
Q 011710 235 LRDCKNLGDEA----LRAISSLPQLKILLLDGSDISDVGVSYLRLT---VITSLVKLSLRGCKRLTDKCISALFDG-TSK 306 (479)
Q Consensus 235 l~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~-~~~ 306 (479)
+++| .++..+ ...+..+++|+.|++++|.+++.++..+... .+++|++|++++| .+++.+...++.. ..+
T Consensus 206 L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 206 LESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAK 283 (461)
T ss_dssp CTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHC
T ss_pred ccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhC
Confidence 9996 566654 3345578999999999999998887666541 3789999999997 6887765444321 012
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhc----CCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCH
Q 011710 307 LQLQELDLSNLPHLSDNGILTLATC----RVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ 382 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~ 382 (479)
++|++|+++++ .+++.+...+... .++|+.|++++| .+++.+...++..+. .+++|+.|++++|. +++
T Consensus 284 ~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~-----~~~~L~~L~Ls~n~-i~~ 355 (461)
T 1z7x_W 284 ESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLA-----QNRFLLELQISNNR-LED 355 (461)
T ss_dssp TTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHH-----HCSSCCEEECCSSB-CHH
T ss_pred CCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHh-----hCCCccEEEccCCc-ccc
Confidence 89999999994 8888777666543 369999999999 788776665555443 58999999999997 988
Q ss_pred HHHHHhhc---cCCCCccEEEecCCCCH-H---HHHHHHhcCCCceeecc
Q 011710 383 LAFRWLKK---PYFPRLRWLGVTGSVNR-D---ILDALARSRPFLNVACR 425 (479)
Q Consensus 383 ~~~~~l~~---~~~~~L~~L~l~~~~~~-~---~~~~~~~~~p~l~~~~~ 425 (479)
.+...+.. ...++|+.|++++|... . .+.......|.++....
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 87766653 12679999999999833 2 23333345677654433
No 7
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.7e-22 Score=193.66 Aligned_cols=264 Identities=20% Similarity=0.200 Sum_probs=176.7
Q ss_pred HcCCCCCeEEEcCCCccCHHHHHHHH---HhCCCCceEEecCCCC--CCH---HHHH---HHHhcCCCccEEEccCCCCC
Q 011710 148 DKCASMESICLGGFCRVTDTGFKTIL---HSCSNLYKLRVSHGTQ--LTD---LVFH---DISATSLSLTHVCLRWCNLL 216 (479)
Q Consensus 148 ~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~--~~~---~~~~---~~~~~~~~L~~L~l~~~~~~ 216 (479)
..+++|+.|++++| .++..+...+. ..+++|++|+++++.. ++. .++. .....+++|++|+++++ .+
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l 106 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AF 106 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CC
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cC
Confidence 44677888888774 67766555543 3567788888876531 221 1222 22346788888888884 55
Q ss_pred CHHH----HHHhhcCCCCCEEecCCCCCCChHHHHhhh----cC---------CCCcEEEccCCCCchHHHHHHHh--hc
Q 011710 217 TNHA----IKSLASNTGIKVLDLRDCKNLGDEALRAIS----SL---------PQLKILLLDGSDISDVGVSYLRL--TV 277 (479)
Q Consensus 217 ~~~~----~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~----~l---------~~L~~L~l~~~~l~~~~l~~l~~--~~ 277 (479)
+..+ ...+..+++|++|++++| .++..+...+. .+ ++|+.|++++|.+++.++..+.. ..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 5532 234567889999999885 56655544443 33 89999999999888766663322 14
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhc-c-CCCCCccEEecCCCCCCCHHHHHHH---HhcCCCCcEEecCCCCCCCHHHHH
Q 011710 278 ITSLVKLSLRGCKRLTDKCISALFD-G-TSKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVI 352 (479)
Q Consensus 278 ~~~L~~L~l~~~~~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~ 352 (479)
+++|++|++++| .+++.++..++. . ..+++|++|+|++| .+++.+...+ ...+++|+.|++++| .+++.+..
T Consensus 186 ~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~ 262 (386)
T 2ca6_A 186 HRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAA 262 (386)
T ss_dssp CTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHH
T ss_pred CCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHH
Confidence 889999999986 577776555433 1 22389999999994 7876555443 456789999999999 78998887
Q ss_pred HHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhc---cCCCCccEEEecCCC---CHHHHHHHHhcCCCce
Q 011710 353 ALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSV---NRDILDALARSRPFLN 421 (479)
Q Consensus 353 ~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~---~~~~~L~~L~l~~~~---~~~~~~~~~~~~p~l~ 421 (479)
.++..+... .+++|+.|++++|. ++..++..+.. ..+|+|+.|++++|. ....+..+....|.++
T Consensus 263 ~l~~~l~~~---~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 263 AVVDAFSKL---ENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHTC---SSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHhhc---cCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence 776644210 37899999999998 88865444432 137999999999987 1212455555444443
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.1e-21 Score=187.45 Aligned_cols=240 Identities=14% Similarity=0.101 Sum_probs=176.5
Q ss_pred HHhCCCCceEEecCCCCCCHHHHHHH---HhcCCCccEEEccCC--CCCC---HHHHH----HhhcCCCCCEEecCCCCC
Q 011710 173 LHSCSNLYKLRVSHGTQLTDLVFHDI---SATSLSLTHVCLRWC--NLLT---NHAIK----SLASNTGIKVLDLRDCKN 240 (479)
Q Consensus 173 ~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~--~~~~---~~~~~----~l~~~~~L~~L~l~~~~~ 240 (479)
+..+++|++|++++|. +...+...+ ...+++|+.|++++| +.++ ..++. .+..+++|++|++++| .
T Consensus 28 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~ 105 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-A 105 (386)
T ss_dssp HHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-C
T ss_pred HhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-c
Confidence 4668999999999875 566555544 346889999999986 2222 22332 2358899999999995 6
Q ss_pred CChH----HHHhhhcCCCCcEEEccCCCCchHHHHHHHhh--cC---------CCccEEecCCCCCCCHHHHHHH---hc
Q 011710 241 LGDE----ALRAISSLPQLKILLLDGSDISDVGVSYLRLT--VI---------TSLVKLSLRGCKRLTDKCISAL---FD 302 (479)
Q Consensus 241 l~~~----~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~--~~---------~~L~~L~l~~~~~l~~~~~~~l---~~ 302 (479)
++.. ....+..+++|+.|++++|.++..+...+... .+ ++|++|++++|. +++.++..+ ..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQ 184 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHH
Confidence 7764 33456789999999999999987766555540 13 899999999964 665544432 22
Q ss_pred cCCCCCccEEecCCCCCCCHHHHHHHHh----cCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCC
Q 011710 303 GTSKLQLQELDLSNLPHLSDNGILTLAT----CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 303 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 378 (479)
.+ ++|++|++++| .+++.++..+.. .+++|+.|++++| .+++.+...++..+. .+++|+.|++++|.
T Consensus 185 ~~--~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~-----~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 185 SH--RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALK-----SWPNLRELGLNDCL 255 (386)
T ss_dssp HC--TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGG-----GCTTCCEEECTTCC
T ss_pred hC--CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHc-----cCCCcCEEECCCCC
Confidence 33 79999999995 889887665544 6899999999999 788887777776555 68999999999998
Q ss_pred CCCHHHHHHhhc----cCCCCccEEEecCCCCHH-----HHHHHHhcCCCceeecc
Q 011710 379 GITQLAFRWLKK----PYFPRLRWLGVTGSVNRD-----ILDALARSRPFLNVACR 425 (479)
Q Consensus 379 ~i~~~~~~~l~~----~~~~~L~~L~l~~~~~~~-----~~~~~~~~~p~l~~~~~ 425 (479)
++..+...+.. ..+++|+.|++++|.... ....+....|.++....
T Consensus 256 -i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 256 -LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp -CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred -CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 99876655543 238999999999998433 33344355687765543
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=9.4e-22 Score=187.11 Aligned_cols=282 Identities=19% Similarity=0.233 Sum_probs=174.9
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccc
Q 011710 56 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 56 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 135 (479)
..+++|++|+++++.+.+... ...+++|++|++++|. ++. ++.+..+++|++|+++++ ..
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~---------i~~--~~~~~~l~~L~~L~l~~n------~i 122 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNK---------ITD--ISALQNLTNLRELYLNED------NI 122 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC---------CCC--CGGGTTCTTCSEEECTTS------CC
T ss_pred hhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCc---------ccC--chHHcCCCcCCEEECcCC------cc
Confidence 347788888888776665322 3467888888888774 222 345667788888888642 12
Q ss_pred cccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 011710 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 215 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (479)
..+.. ...+++|+.|++++|....... . ...+++|+.|+++++....... ...+++|++|++++| .
T Consensus 123 ~~~~~------~~~l~~L~~L~l~~n~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n-~ 188 (347)
T 4fmz_A 123 SDISP------LANLTKMYSLNLGANHNLSDLS--P-LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYN-Q 188 (347)
T ss_dssp CCCGG------GTTCTTCCEEECTTCTTCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTS-C
T ss_pred cCchh------hccCCceeEEECCCCCCccccc--c-hhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCC-c
Confidence 22211 2457788888888764444321 1 3567788888887765432222 446678888888875 3
Q ss_pred CCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHH
Q 011710 216 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~ 295 (479)
+.... .+..+++|+.|+++++ .+..... +..+++|+.|++++|.++.... +. .+++|++|++++|. ++..
T Consensus 189 l~~~~--~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~-l~~~ 258 (347)
T 4fmz_A 189 IEDIS--PLASLTSLHYFTAYVN-QITDITP--VANMTRLNSLKIGNNKITDLSP--LA--NLSQLTWLEIGTNQ-ISDI 258 (347)
T ss_dssp CCCCG--GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSC-CCCC
T ss_pred ccccc--cccCCCccceeecccC-CCCCCch--hhcCCcCCEEEccCCccCCCcc--hh--cCCCCCEEECCCCc-cCCC
Confidence 33322 2567788888888775 4443322 6677888888888887665432 33 47888888887753 3321
Q ss_pred HHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEcc
Q 011710 296 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 375 (479)
Q Consensus 296 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 375 (479)
..+ ..+++|++|++++| .++... ....+++|+.|++++| .++......+. .+++|+.|+++
T Consensus 259 --~~~---~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~l~---------~l~~L~~L~L~ 319 (347)
T 4fmz_A 259 --NAV---KDLTKLKMLNVGSN-QISDIS---VLNNLSQLNSLFLNNN-QLGNEDMEVIG---------GLTNLTTLFLS 319 (347)
T ss_dssp --GGG---TTCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSS-CCCGGGHHHHH---------TCTTCSEEECC
T ss_pred --hhH---hcCCCcCEEEccCC-ccCCCh---hhcCCCCCCEEECcCC-cCCCcChhHhh---------ccccCCEEEcc
Confidence 111 12378888888875 554321 1335778888888888 66665555555 37788888888
Q ss_pred CCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 376 NCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 376 ~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
+|+ ++.... +. .+++|+.|++++|+
T Consensus 320 ~n~-l~~~~~--~~--~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 320 QNH-ITDIRP--LA--SLSKMDSADFANQV 344 (347)
T ss_dssp SSS-CCCCGG--GG--GCTTCSEESSSCC-
T ss_pred CCc-cccccC--hh--hhhccceeehhhhc
Confidence 887 554222 33 37888888888775
No 10
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=5.1e-21 Score=181.16 Aligned_cols=278 Identities=17% Similarity=0.231 Sum_probs=159.1
Q ss_pred HhhhhccceeeccccchhhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCC
Q 011710 17 ALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPL 96 (479)
Q Consensus 17 ~~~p~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 96 (479)
..+|..+...++++++..+...+..|++. |+..... ...++.++++.+.+.+..+..+. .++++.|+++++.
T Consensus 10 ~~LP~eil~~If~~L~~~d~~~~~~vc~~----W~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~--~~~l~~L~l~~n~- 81 (336)
T 2ast_B 10 DSLPDELLLGIFSCLCLPELLKVSGVCKR----WYRLASD-ESLWQTLDLTGKNLHPDVTGRLL--SQGVIAFRCPRSF- 81 (336)
T ss_dssp SSSCHHHHHHHHTTSCHHHHHHTTSSCHH----HHHHHTC-STTSSEEECTTCBCCHHHHHHHH--HTTCSEEECTTCE-
T ss_pred hhCCHHHHHHHHHhCCHHHHHHHHHHHHH----HHHHhcC-chhheeeccccccCCHHHHHhhh--hccceEEEcCCcc-
Confidence 44565665666666666665555444421 3222111 23578899998888765554432 3789999999874
Q ss_pred CCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhC
Q 011710 97 IEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSC 176 (479)
Q Consensus 97 l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 176 (479)
++.. ...+..+++|++|++++ +.+...++..+...+++|+.|++++| .+++..+..+ ..+
T Consensus 82 --------l~~~-~~~~~~~~~L~~L~L~~---------~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l-~~~ 141 (336)
T 2ast_B 82 --------MDQP-LAEHFSPFRVQHMDLSN---------SVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTL-AKN 141 (336)
T ss_dssp --------ECSC-CCSCCCCBCCCEEECTT---------CEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHH-TTC
T ss_pred --------cccc-chhhccCCCCCEEEccC---------CCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHH-hcC
Confidence 2221 12234567788888753 34555556656666777777777775 5666545444 447
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHH-HhhcCC-CCCEEecCCCC-CCChHHHH-hhhcC
Q 011710 177 SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIK-SLASNT-GIKVLDLRDCK-NLGDEALR-AISSL 252 (479)
Q Consensus 177 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~-~L~~L~l~~~~-~l~~~~~~-~l~~l 252 (479)
++|++|++++|..+++.++..+...+++|++|++++|..+++.++. .+..++ +|++|++++|. .+++..+. .+..+
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 221 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC
Confidence 7777777777656666556655666667777777775456554322 244566 66666666653 34433332 33456
Q ss_pred CCCcEEEccCCC-CchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHH
Q 011710 253 PQLKILLLDGSD-ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLA 329 (479)
Q Consensus 253 ~~L~~L~l~~~~-l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 329 (479)
++|+.|++++|. +++..+..+.. +++|++|++++|..+++.++..+.. +++|++|++++| +++.++..+.
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~l~~---~~~L~~L~l~~~--i~~~~~~~l~ 292 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQEFFQ--LNYLQHLSLSRCYDIIPETLLELGE---IPTLKTLQVFGI--VPDGTLQLLK 292 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGGGGGG--CTTCCEEECTTCTTCCGGGGGGGGG---CTTCCEEECTTS--SCTTCHHHHH
T ss_pred CCCCEEeCCCCCcCCHHHHHHHhC--CCCCCEeeCCCCCCCCHHHHHHHhc---CCCCCEEeccCc--cCHHHHHHHH
Confidence 666666666665 55555544443 5566666665555444444322221 255555555554 4444444443
No 11
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=3.2e-19 Score=168.79 Aligned_cols=198 Identities=18% Similarity=0.251 Sum_probs=95.3
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
+++|++|+++++.+.+..+......+++|++|++++| .+++.....+..+++|++|++++ +..
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~---------~l~~~~~~~l~~~~~L~~L~L~~--------~~~ 154 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL---------RLSDPIVNTLAKNSNLVRLNLSG--------CSG 154 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC---------BCCHHHHHHHTTCTTCSEEECTT--------CBS
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc---------ccCHHHHHHHhcCCCCCEEECCC--------CCC
Confidence 4555555555555555444444445555555555554 24444444445555555555532 223
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCC-CCceEEecCCC-CCCHHHHHHHHhcCCCccEEEccCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCS-NLYKLRVSHGT-QLTDLVFHDISATSLSLTHVCLRWCNL 215 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~-~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (479)
+++.++..+...+++|+.|++++|..+++.++..+...++ +|++|++++|. .+++..+......+++|++|++++|..
T Consensus 155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 4444444444445555555555543455444444444455 55555555543 344444444444455555555555433
Q ss_pred CCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHH
Q 011710 216 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYL 273 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l 273 (479)
+++..+..+..+++|++|++++|..+.+.++..+..+++|+.|++++| +++.++..+
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l 291 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL 291 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHH
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHH
Confidence 444334344444555555555544444444444444455555555544 444444433
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=4.2e-20 Score=175.68 Aligned_cols=282 Identities=19% Similarity=0.207 Sum_probs=207.1
Q ss_pred CCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccccccccccccc
Q 011710 57 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 136 (479)
Q Consensus 57 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 136 (479)
.+++|++|+++++.+... +.+ ..+++|++|++++|. ++. ++.+..+++|++|+++++ ...
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~~~-~~~~~L~~L~l~~n~---------i~~--~~~~~~l~~L~~L~L~~n------~i~ 101 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--QGI-EYLTNLEYLNLNGNQ---------ITD--ISPLSNLVKLTNLYIGTN------KIT 101 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--TTG-GGCTTCCEEECCSSC---------CCC--CGGGTTCTTCCEEECCSS------CCC
T ss_pred hcccccEEEEeCCccccc--hhh-hhcCCccEEEccCCc---------ccc--chhhhcCCcCCEEEccCC------ccc
Confidence 378999999998776652 333 479999999999985 332 223778999999999763 122
Q ss_pred ccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCC
Q 011710 137 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 216 (479)
Q Consensus 137 ~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (479)
.+. . ...+++|+.|+++++ .+..... ...+++|+.|+++++........ ...+++|+.|++++|. +
T Consensus 102 ~~~-----~-~~~l~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~-~ 167 (347)
T 4fmz_A 102 DIS-----A-LQNLTNLRELYLNED-NISDISP---LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESK-V 167 (347)
T ss_dssp CCG-----G-GTTCTTCSEEECTTS-CCCCCGG---GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSC-C
T ss_pred Cch-----H-HcCCCcCCEEECcCC-cccCchh---hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCC-c
Confidence 221 1 256899999999995 5654322 46799999999999865543221 5678899999999964 3
Q ss_pred CHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHH
Q 011710 217 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 296 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~ 296 (479)
.... .+..+++|+.|++++| .+.... .+..+++|+.|++++|.++.... +. .+++|++|++++|. ++...
T Consensus 168 ~~~~--~~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~--~~~~L~~L~l~~n~-l~~~~ 237 (347)
T 4fmz_A 168 KDVT--PIANLTDLYSLSLNYN-QIEDIS--PLASLTSLHYFTAYVNQITDITP--VA--NMTRLNSLKIGNNK-ITDLS 237 (347)
T ss_dssp CCCG--GGGGCTTCSEEECTTS-CCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GG--GCTTCCEEECCSSC-CCCCG
T ss_pred CCch--hhccCCCCCEEEccCC-cccccc--cccCCCccceeecccCCCCCCch--hh--cCCcCCEEEccCCc-cCCCc
Confidence 3322 2678999999999996 454432 37789999999999998876443 33 48999999999975 43221
Q ss_pred HHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccC
Q 011710 297 ISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 376 (479)
Q Consensus 297 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 376 (479)
. .. .+++|++|++++| .++.. . ....+++|+.|++++| .+++. ..+ . .+++|+.|++++
T Consensus 238 ~---~~--~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~l~~n-~l~~~--~~~-~--------~l~~L~~L~L~~ 296 (347)
T 4fmz_A 238 P---LA--NLSQLTWLEIGTN-QISDI--N-AVKDLTKLKMLNVGSN-QISDI--SVL-N--------NLSQLNSLFLNN 296 (347)
T ss_dssp G---GT--TCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSS-CCCCC--GGG-G--------GCTTCSEEECCS
T ss_pred c---hh--cCCCCCEEECCCC-ccCCC--h-hHhcCCCcCEEEccCC-ccCCC--hhh-c--------CCCCCCEEECcC
Confidence 1 22 3389999999996 55542 1 2346899999999999 66653 222 2 689999999999
Q ss_pred CCCCCHHHHHHhhccCCCCccEEEecCCCC
Q 011710 377 CGGITQLAFRWLKKPYFPRLRWLGVTGSVN 406 (479)
Q Consensus 377 c~~i~~~~~~~l~~~~~~~L~~L~l~~~~~ 406 (479)
|. ++......+.. +++|+.|++++|..
T Consensus 297 n~-l~~~~~~~l~~--l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 297 NQ-LGNEDMEVIGG--LTNLTTLFLSQNHI 323 (347)
T ss_dssp SC-CCGGGHHHHHT--CTTCSEEECCSSSC
T ss_pred Cc-CCCcChhHhhc--cccCCEEEccCCcc
Confidence 98 88777777765 99999999999983
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=8.9e-22 Score=194.49 Aligned_cols=181 Identities=17% Similarity=0.077 Sum_probs=107.1
Q ss_pred CCccEEEccCCCCCCHHHHHHhh---cCCCCCEEecCCCCCCChH---------HHHhhh--cCCCCcEEEccCCCCchH
Q 011710 203 LSLTHVCLRWCNLLTNHAIKSLA---SNTGIKVLDLRDCKNLGDE---------ALRAIS--SLPQLKILLLDGSDISDV 268 (479)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~l~~~---------~~~~l~--~l~~L~~L~l~~~~l~~~ 268 (479)
++|+.|+++++ .+.......+. ..++|+.|+++++...... ....+. ..++|+.|++++|.++..
T Consensus 212 ~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 212 TSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp CEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred ceeeeEecCCC-cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc
Confidence 46677777663 44443333332 3366777776654221110 000111 236788888888877754
Q ss_pred HHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCH
Q 011710 269 GVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGD 348 (479)
Q Consensus 269 ~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 348 (479)
....+.. +++|+.|+++++. ++......+. .+++|++|+++++ .++...... ...+++|+.|++++| .++.
T Consensus 291 ~~~~~~~--l~~L~~L~Ls~n~-l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~ 361 (455)
T 3v47_A 291 LKSVFSH--FTDLEQLTLAQNE-INKIDDNAFW---GLTHLLKLNLSQN-FLGSIDSRM-FENLDKLEVLDLSYN-HIRA 361 (455)
T ss_dssp CTTTTTT--CTTCCEEECTTSC-CCEECTTTTT---TCTTCCEEECCSS-CCCEECGGG-GTTCTTCCEEECCSS-CCCE
T ss_pred chhhccc--CCCCCEEECCCCc-ccccChhHhc---CcccCCEEECCCC-ccCCcChhH-hcCcccCCEEECCCC-cccc
Confidence 4333443 8889999998854 4422111111 2378999999884 555322222 235788999999988 5554
Q ss_pred HHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 349 TSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 349 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.....+. .+++|++|++++|. ++......+. .+++|+.|++++|+
T Consensus 362 ~~~~~~~---------~l~~L~~L~L~~N~-l~~~~~~~~~--~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 362 LGDQSFL---------GLPNLKELALDTNQ-LKSVPDGIFD--RLTSLQKIWLHTNP 406 (455)
T ss_dssp ECTTTTT---------TCTTCCEEECCSSC-CSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred cChhhcc---------ccccccEEECCCCc-cccCCHhHhc--cCCcccEEEccCCC
Confidence 3222222 57889999999887 6653333333 48899999998876
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=4.9e-21 Score=190.28 Aligned_cols=301 Identities=17% Similarity=0.106 Sum_probs=169.2
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
.+++++|+|+++.+.......+ ..+++|++|+|++|. ++......+..+++|++|+++++ .+..
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~---------i~~~~~~~~~~l~~L~~L~L~~n------~l~~ 94 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENI---------VSAVEPGAFNNLFNLRTLGLRSN------RLKL 94 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSC---------CCEECTTTTTTCTTCCEEECCSS------CCCS
T ss_pred CCCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCc---------cCEeChhhhhCCccCCEEECCCC------cCCc
Confidence 4577788887776665332223 367778888887763 33322334566777888877642 1222
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+....+ ..+++|+.|+++++ .+....... +..+++|++|+++++.. ..... .....+++|+.|+++++ .++
T Consensus 95 ~~~~~~----~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~~n-~l~ 165 (477)
T 2id5_A 95 IPLGVF----TGLSNLTKLDISEN-KIVILLDYM-FQDLYNLKSLEVGDNDL-VYISH-RAFSGLNSLEQLTLEKC-NLT 165 (477)
T ss_dssp CCTTSS----TTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEEECCTTC-CEECT-TSSTTCTTCCEEEEESC-CCS
T ss_pred cCcccc----cCCCCCCEEECCCC-ccccCChhH-ccccccCCEEECCCCcc-ceeCh-hhccCCCCCCEEECCCC-cCc
Confidence 222211 34677888888773 444331111 25577778887776542 11111 11235667888888774 454
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011710 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 297 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~ 297 (479)
..+...+..+++|+.|+++++ .+.......+..+++|+.|++++|............ ..+|++|+++++. ++....
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~n~-l~~~~~ 241 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--GLNLTSLSITHCN-LTAVPY 241 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT--TCCCSEEEEESSC-CCSCCH
T ss_pred ccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCccccc--CccccEEECcCCc-ccccCH
Confidence 444445667778888887774 455444445667777888877776443322222222 4477777777753 432221
Q ss_pred HHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCC
Q 011710 298 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 377 (479)
Q Consensus 298 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 377 (479)
..+. .+++|++|+++++ .++...... ...+++|+.|++++| .++......+. .+++|+.|++++|
T Consensus 242 ~~~~---~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~---------~l~~L~~L~L~~N 306 (477)
T 2id5_A 242 LAVR---HLVYLRFLNLSYN-PISTIEGSM-LHELLRLQEIQLVGG-QLAVVEPYAFR---------GLNYLRVLNVSGN 306 (477)
T ss_dssp HHHT---TCTTCCEEECCSS-CCCEECTTS-CTTCTTCCEEECCSS-CCSEECTTTBT---------TCTTCCEEECCSS
T ss_pred HHhc---CccccCeeECCCC-cCCccChhh-ccccccCCEEECCCC-ccceECHHHhc---------CcccCCEEECCCC
Confidence 1221 2267788888774 454222111 125677888888777 44432221111 4677888888777
Q ss_pred CCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 378 GGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 378 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
. ++......+. .+++|+.|++++|+
T Consensus 307 ~-l~~~~~~~~~--~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 307 Q-LTTLEESVFH--SVGNLETLILDSNP 331 (477)
T ss_dssp C-CSCCCGGGBS--CGGGCCEEECCSSC
T ss_pred c-CceeCHhHcC--CCcccCEEEccCCC
Confidence 6 5543333333 36778888877765
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=1.6e-18 Score=171.38 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=28.6
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIR 126 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 126 (479)
+++|++|+++.+.+..... ...+++|++|++++|. ++. ++.+..+++|++|++++
T Consensus 89 l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~---------l~~--~~~~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQ---------ITD--IDPLKNLTNLNRLELSS 143 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC---------CCC--CGGGTTCTTCSEEEEEE
T ss_pred cccCCEEECCCCccccChh---hcCCCCCCEEECCCCC---------CCC--ChHHcCCCCCCEEECCC
Confidence 5566666666555544221 2356666666666653 111 12245566666666653
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=4.7e-19 Score=175.25 Aligned_cols=279 Identities=22% Similarity=0.248 Sum_probs=201.8
Q ss_pred CCCCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccccccccccc
Q 011710 55 PSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITY 134 (479)
Q Consensus 55 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 134 (479)
...+++|++|+++++.+.... . ...+++|++|++++|. ++. ++.+..+++|++|++.+.
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~l~~n~---------l~~--~~~~~~l~~L~~L~l~~~------- 166 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLELSSNT---------ISD--ISALSGLTSLQQLSFGNQ------- 166 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEEEEEEE---------ECC--CGGGTTCTTCSEEEEEES-------
T ss_pred hcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEECCCCc---------cCC--ChhhccCCcccEeecCCc-------
Confidence 344899999999988777642 2 3589999999999984 332 345778999999999531
Q ss_pred ccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCC
Q 011710 135 FRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN 214 (479)
Q Consensus 135 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 214 (479)
...+.. ...+++|+.|+++++ .+.... . ...+++|++|+++++....... ...+++|+.|+++++
T Consensus 167 ~~~~~~------~~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n- 231 (466)
T 1o6v_A 167 VTDLKP------LANLTTLERLDISSN-KVSDIS--V-LAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGN- 231 (466)
T ss_dssp CCCCGG------GTTCTTCCEEECCSS-CCCCCG--G-GGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSS-
T ss_pred ccCchh------hccCCCCCEEECcCC-cCCCCh--h-hccCCCCCEEEecCCccccccc----ccccCCCCEEECCCC-
Confidence 112111 256899999999995 555432 2 3678999999999876433222 446889999999996
Q ss_pred CCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCH
Q 011710 215 LLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD 294 (479)
Q Consensus 215 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~ 294 (479)
.+... ..+..+++|+.|++++| .+.... .+..+++|+.|++++|.++.... +. .+++|+.|++++|. ++.
T Consensus 232 ~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~L~~n~-l~~ 301 (466)
T 1o6v_A 232 QLKDI--GTLASLTNLTDLDLANN-QISNLA--PLSGLTKLTELKLGANQISNISP--LA--GLTALTNLELNENQ-LED 301 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSS-CCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSC-CSC
T ss_pred Ccccc--hhhhcCCCCCEEECCCC-ccccch--hhhcCCCCCEEECCCCccCcccc--cc--CCCccCeEEcCCCc-ccC
Confidence 45433 35678999999999996 454332 37789999999999998875432 33 48999999999965 432
Q ss_pred HHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEc
Q 011710 295 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 374 (479)
Q Consensus 295 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 374 (479)
... + . .+++|++|++++| .++.... ...+++|+.|++++| .+++. ..+. .+++|+.|++
T Consensus 302 ~~~--~-~--~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~l~---------~l~~L~~L~l 360 (466)
T 1o6v_A 302 ISP--I-S--NLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDV--SSLA---------NLTNINWLSA 360 (466)
T ss_dssp CGG--G-G--GCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCC--GGGT---------TCTTCCEEEC
T ss_pred chh--h-c--CCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCc--hhhc---------cCCCCCEEeC
Confidence 111 1 1 2389999999996 5553322 347899999999999 66643 2222 6899999999
Q ss_pred cCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 375 YNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 375 ~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
++|. +++... +. .+++|+.|++++|.
T Consensus 361 ~~n~-l~~~~~--~~--~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 361 GHNQ-ISDLTP--LA--NLTRITQLGLNDQA 386 (466)
T ss_dssp CSSC-CCBCGG--GT--TCTTCCEEECCCEE
T ss_pred CCCc-cCccch--hh--cCCCCCEEeccCCc
Confidence 9998 665332 43 49999999999986
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=1.9e-20 Score=184.91 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=61.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhcc
Q 011710 279 TSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASML 358 (479)
Q Consensus 279 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 358 (479)
++|+.|+++++. ++......+ ..+++|++|+++++ .+.......+ ..+++|+.|++++| .++......+.
T Consensus 275 ~~L~~L~l~~n~-l~~~~~~~~---~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~--- 344 (455)
T 3v47_A 275 SGVKTCDLSKSK-IFALLKSVF---SHFTDLEQLTLAQN-EINKIDDNAF-WGLTHLLKLNLSQN-FLGSIDSRMFE--- 344 (455)
T ss_dssp SCCCEEECCSSC-CCEECTTTT---TTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECGGGGT---
T ss_pred cCceEEEecCcc-ccccchhhc---ccCCCCCEEECCCC-cccccChhHh-cCcccCCEEECCCC-ccCCcChhHhc---
Confidence 466666666643 321111111 12267888888774 5543222112 24678888888887 55432222222
Q ss_pred ccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 359 VDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 359 ~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+++|++|++++|. ++......+.. +++|+.|++++|.
T Consensus 345 ------~l~~L~~L~Ls~N~-l~~~~~~~~~~--l~~L~~L~L~~N~ 382 (455)
T 3v47_A 345 ------NLDKLEVLDLSYNH-IRALGDQSFLG--LPNLKELALDTNQ 382 (455)
T ss_dssp ------TCTTCCEEECCSSC-CCEECTTTTTT--CTTCCEEECCSSC
T ss_pred ------CcccCCEEECCCCc-ccccChhhccc--cccccEEECCCCc
Confidence 47788888888887 55443334433 7888888888876
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.76 E-value=2.2e-20 Score=191.40 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=71.9
Q ss_pred hhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHH
Q 011710 249 ISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTL 328 (479)
Q Consensus 249 l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l 328 (479)
+..+++|+.|++++|.+.......+.. +++|+.|+++++. ++.......+. .+++|++|++++| .+.......
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~-l~~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~~- 444 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKE--CPQLELLDLAFTR-LKVKDAQSPFQ--NLHLLKVLNLSHS-LLDISSEQL- 444 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTT--CTTCSEEECTTCC-EECCTTCCTTT--TCTTCCEEECTTC-CCBTTCTTT-
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcC--CccCCeEECCCCc-CCCcccchhhh--CcccCCEEECCCC-ccCCcCHHH-
Confidence 334455555555555443322222222 4555555555532 11110000011 2267777777774 443222111
Q ss_pred HhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCCC
Q 011710 329 ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVN 406 (479)
Q Consensus 329 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~~ 406 (479)
...+++|+.|++++| .++...+... ..+. .+++|+.|++++|. ++......+. .+++|+.|++++|..
T Consensus 445 ~~~l~~L~~L~L~~n-~l~~~~~~~~-~~~~-----~l~~L~~L~Ls~n~-l~~~~~~~~~--~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 445 FDGLPALQHLNLQGN-HFPKGNIQKT-NSLQ-----TLGRLEILVLSFCD-LSSIDQHAFT--SLKMMNHVDLSHNRL 512 (606)
T ss_dssp TTTCTTCCEEECTTC-BCGGGEECSS-CGGG-----GCTTCCEEECTTSC-CCEECTTTTT--TCTTCCEEECCSSCC
T ss_pred HhCCCCCCEEECCCC-CCCccccccc-hhhc-----cCCCccEEECCCCc-cCccChhhhc--cccCCCEEECCCCcc
Confidence 224778888888877 4433111100 0011 57888888888887 6654334443 388999999998873
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.76 E-value=5.8e-21 Score=195.63 Aligned_cols=137 Identities=13% Similarity=0.102 Sum_probs=70.9
Q ss_pred chhHHHHHHhhhhccceeeccccchh-----hhhhccCC---CCCCCCCCCcc--CCCCCCCCcEEEeecCccChhHHHH
Q 011710 9 RHNFARVWALASEKLTSLEIGYISSV-----MVTELLSP---NVEPHQSPNQI--RPSILPGIQKLCLSVDYITDAMVGT 78 (479)
Q Consensus 9 ~~~~~~~~~~~p~~L~~L~l~~~~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~ 78 (479)
...+..++..+|+.+++|++++.... .+..+..+ .+......... ....+++|++|+|+++.+.......
T Consensus 20 ~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 20 DQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp TSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 34445555666778999998843221 11111111 11111111110 1123677777777766665432223
Q ss_pred HHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEE
Q 011710 79 ISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICL 158 (479)
Q Consensus 79 l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l 158 (479)
+ ..+++|++|++++|. ++......++.+++|++|+++++ .+....+......+++|+.|++
T Consensus 100 ~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n---------~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 100 F-SGLTSLENLVAVETK---------LASLESFPIGQLITLKKLNVAHN---------FIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp S-TTCTTCCEEECTTSC---------CCCSSSSCCTTCTTCCEEECCSS---------CCCCCCCCGGGGTCTTCCEEEC
T ss_pred c-CCcccCCEEEccCCc---------cccccccccCCCCCCCEEeCCCC---------cccceechHhHhhcCCCCEEEc
Confidence 3 367777777777764 22211123567788888888652 2221111112256889999999
Q ss_pred cCCCccC
Q 011710 159 GGFCRVT 165 (479)
Q Consensus 159 ~~~~~l~ 165 (479)
+++ .+.
T Consensus 161 s~n-~l~ 166 (606)
T 3vq2_A 161 SYN-YIQ 166 (606)
T ss_dssp CSS-CCC
T ss_pred cCC-cce
Confidence 984 444
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=6.1e-21 Score=194.09 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=89.3
Q ss_pred cCCCCCEEecCCCCCCChHH--HHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhcc
Q 011710 226 SNTGIKVLDLRDCKNLGDEA--LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG 303 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 303 (479)
.+++|+.|++++| .+.... ...+..+++|+.|++++|.+...... +. .+++|+.|+++++. ++.......+.
T Consensus 345 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~~~~~~- 418 (570)
T 2z63_A 345 DLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL--GLEQLEHLDFQHSN-LKQMSEFSVFL- 418 (570)
T ss_dssp BCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE--TCTTCCEEECTTSE-EESCTTSCTTT-
T ss_pred cCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCcccccccc-cc--ccCCCCEEEccCCc-cccccchhhhh-
Confidence 5677888888775 444332 34556778888888888866543222 22 37788888887753 22111000111
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHH
Q 011710 304 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 383 (479)
Q Consensus 304 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~ 383 (479)
.+++|++|++++| .+...... ....+++|+.|++++| .+++..+..... .+++|+.|++++|. ++..
T Consensus 419 -~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~p~~~~--------~l~~L~~L~l~~n~-l~~~ 485 (570)
T 2z63_A 419 -SLRNLIYLDISHT-HTRVAFNG-IFNGLSSLEVLKMAGN-SFQENFLPDIFT--------ELRNLTFLDLSQCQ-LEQL 485 (570)
T ss_dssp -TCTTCCEEECTTS-CCEECCTT-TTTTCTTCCEEECTTC-EEGGGEECSCCT--------TCTTCCEEECTTSC-CCEE
T ss_pred -cCCCCCEEeCcCC-cccccchh-hhhcCCcCcEEECcCC-cCccccchhhhh--------cccCCCEEECCCCc-cccC
Confidence 2267888888775 33321111 1225677777777777 433211111111 56777777777776 5543
Q ss_pred HHHHhhccCCCCccEEEecCCC
Q 011710 384 AFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 384 ~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
....+. .+++|+.|++++|.
T Consensus 486 ~~~~~~--~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 486 SPTAFN--SLSSLQVLNMASNQ 505 (570)
T ss_dssp CTTTTT--TCTTCCEEECCSSC
T ss_pred Chhhhh--cccCCCEEeCCCCc
Confidence 333333 36777777777775
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.75 E-value=2.4e-20 Score=185.27 Aligned_cols=321 Identities=16% Similarity=0.115 Sum_probs=207.8
Q ss_pred hhHHHHHHhhhhccceeeccccchhhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHHHHcCCCccEE
Q 011710 10 HNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHL 89 (479)
Q Consensus 10 ~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L 89 (479)
..+..++..+|+.++.|++++........- ....+++|++|+|+.+.+.......+ ..+++|++|
T Consensus 21 ~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~--------------~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L 85 (477)
T 2id5_A 21 KRFVAVPEGIPTETRLLDLGKNRIKTLNQD--------------EFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTL 85 (477)
T ss_dssp CCCSSCCSCCCTTCSEEECCSSCCCEECTT--------------TTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEE
T ss_pred CCcCcCCCCCCCCCcEEECCCCccceECHh--------------HccCCCCCCEEECCCCccCEeChhhh-hCCccCCEE
Confidence 334445555667888888875332111100 12448899999999888776433333 478999999
Q ss_pred eccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHH
Q 011710 90 DLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGF 169 (479)
Q Consensus 90 ~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~ 169 (479)
+|++|. ++......+..+++|++|+++++ .+..+....+ ..+++|+.|++++ +.+.....
T Consensus 86 ~L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n------~i~~~~~~~~----~~l~~L~~L~l~~-n~l~~~~~ 145 (477)
T 2id5_A 86 GLRSNR---------LKLIPLGVFTGLSNLTKLDISEN------KIVILLDYMF----QDLYNLKSLEVGD-NDLVYISH 145 (477)
T ss_dssp ECCSSC---------CCSCCTTSSTTCTTCCEEECTTS------CCCEECTTTT----TTCTTCCEEEECC-TTCCEECT
T ss_pred ECCCCc---------CCccCcccccCCCCCCEEECCCC------ccccCChhHc----cccccCCEEECCC-CccceeCh
Confidence 999985 33222224567899999999752 1222222222 4688999999998 45554322
Q ss_pred HHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhh
Q 011710 170 KTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAI 249 (479)
Q Consensus 170 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l 249 (479)
.. +..+++|++|+++++.. ..... .....+++|+.|+++++ .+.......+..+++|+.|++++|..+..... ..
T Consensus 146 ~~-~~~l~~L~~L~l~~n~l-~~~~~-~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~ 220 (477)
T 2id5_A 146 RA-FSGLNSLEQLTLEKCNL-TSIPT-EALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-NC 220 (477)
T ss_dssp TS-STTCTTCCEEEEESCCC-SSCCH-HHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECT-TT
T ss_pred hh-ccCCCCCCEEECCCCcC-cccCh-hHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCc-cc
Confidence 22 25689999999998753 32222 23457789999999984 55444444566889999999999755443322 23
Q ss_pred hcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHH
Q 011710 250 SSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLA 329 (479)
Q Consensus 250 ~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 329 (479)
....+|+.|++++|.++......+.. +++|+.|+++++. ++......+ ..+++|++|+++++ .+.......+
T Consensus 221 ~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~-l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~- 292 (477)
T 2id5_A 221 LYGLNLTSLSITHCNLTAVPYLAVRH--LVYLRFLNLSYNP-ISTIEGSML---HELLRLQEIQLVGG-QLAVVEPYAF- 292 (477)
T ss_dssp TTTCCCSEEEEESSCCCSCCHHHHTT--CTTCCEEECCSSC-CCEECTTSC---TTCTTCCEEECCSS-CCSEECTTTB-
T ss_pred ccCccccEEECcCCcccccCHHHhcC--ccccCeeECCCCc-CCccChhhc---cccccCCEEECCCC-ccceECHHHh-
Confidence 34459999999999888655555554 8999999999864 442221111 12389999999994 6654322222
Q ss_pred hcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHh
Q 011710 330 TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 388 (479)
Q Consensus 330 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l 388 (479)
..+++|+.|++++| .++......+. .+++|+.|++++|+..-+..+.++
T Consensus 293 ~~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~l~~N~l~c~c~~~~~ 341 (477)
T 2id5_A 293 RGLNYLRVLNVSGN-QLTTLEESVFH---------SVGNLETLILDSNPLACDCRLLWV 341 (477)
T ss_dssp TTCTTCCEEECCSS-CCSCCCGGGBS---------CGGGCCEEECCSSCEECSGGGHHH
T ss_pred cCcccCCEEECCCC-cCceeCHhHcC---------CCcccCEEEccCCCccCccchHhH
Confidence 36899999999999 65542221111 578999999999883323333343
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=172.70 Aligned_cols=106 Identities=19% Similarity=0.171 Sum_probs=62.2
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccc
Q 011710 56 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 56 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 135 (479)
..+++|++|+++++.+.......+ ..+++|++|++++|. ++. ++.. .+++|++|+++++
T Consensus 42 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~---------l~~--lp~~-~l~~L~~L~L~~N-------- 100 (520)
T 2z7x_B 42 LSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNK---------LVK--ISCH-PTVNLKHLDLSFN-------- 100 (520)
T ss_dssp TTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECCSSC---------CCE--EECC-CCCCCSEEECCSS--------
T ss_pred cccccccEEecCCCccCCcChHHh-hcccCCCEEecCCCc---------eee--cCcc-ccCCccEEeccCC--------
Confidence 347788888888777765433333 367788888888774 221 2222 5778888888652
Q ss_pred cccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCC--ceEEecCCC
Q 011710 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNL--YKLRVSHGT 188 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L--~~L~l~~~~ 188 (479)
.+....+......+++|+.|++++ +.+....+ ..+++| +.|+++++.
T Consensus 101 -~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~----~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 101 -AFDALPICKEFGNMSQLKFLGLST-THLEKSSV----LPIAHLNISKVLLVLGE 149 (520)
T ss_dssp -CCSSCCCCGGGGGCTTCCEEEEEE-SSCCGGGG----GGGTTSCEEEEEEEECT
T ss_pred -ccccccchhhhccCCcceEEEecC-cccchhhc----cccccceeeEEEeeccc
Confidence 222111111124578899999988 45655322 345555 777666543
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.75 E-value=5.2e-20 Score=193.16 Aligned_cols=310 Identities=15% Similarity=0.094 Sum_probs=165.2
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccccccc--ccc
Q 011710 56 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEF--LIT 133 (479)
Q Consensus 56 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~--~~~ 133 (479)
..+++|++|+++++.+.......+ ..+++|++|++++|......+ .. .+++|++|+++.+.-. ...
T Consensus 220 ~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~----------~~-~l~~L~~L~L~~n~l~~~ip~ 287 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIP----------PL-PLKSLQYLSLAENKFTGEIPD 287 (768)
T ss_dssp TTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCC----------CC-CCTTCCEEECCSSEEEESCCC
T ss_pred ccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccC----------cc-ccCCCCEEECcCCccCCccCH
Confidence 347899999999888876655555 478999999999885321111 01 3445555555432100 000
Q ss_pred c--------------ccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHH
Q 011710 134 Y--------------FRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDIS 199 (479)
Q Consensus 134 ~--------------~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 199 (479)
. .+.+.... ......+++|+.|+++++ .+........+..+++|++|+++++..... ....+.
T Consensus 288 ~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~ 364 (768)
T 3rgz_A 288 FLSGACDTLTGLDLSGNHFYGAV-PPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGE-LPESLT 364 (768)
T ss_dssp CSCTTCTTCSEEECCSSEEEECC-CGGGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEEC-CCTTHH
T ss_pred HHHhhcCcCCEEECcCCcCCCcc-chHHhcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCcc-ccHHHH
Confidence 0 00111000 001133555666666553 332111112124455666666655432100 000111
Q ss_pred hcCCCccEEEccCCCCCCHHHHHHhhc--CCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhc
Q 011710 200 ATSLSLTHVCLRWCNLLTNHAIKSLAS--NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTV 277 (479)
Q Consensus 200 ~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~ 277 (479)
...++|+.|+++++ .+.......+.. +++|+.|++++| .+.......+..+++|+.|++++|.++......+..
T Consensus 365 ~l~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-- 440 (768)
T 3rgz_A 365 NLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-- 440 (768)
T ss_dssp HHTTTCSEEECCSS-EEEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG--
T ss_pred hhhcCCcEEEccCC-CcCCCcChhhhhcccCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc--
Confidence 11225666666653 221111111222 567777777775 444444455667888888888888666443344444
Q ss_pred CCCccEEecCCCCCCC--HHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHH
Q 011710 278 ITSLVKLSLRGCKRLT--DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA 355 (479)
Q Consensus 278 ~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~ 355 (479)
+++|+.|++++|.... +..+.. +++|++|++++| .+....... ...+++|+.|++++| .++......+.
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~L~~N-~l~~~~p~~-l~~l~~L~~L~L~~N-~l~~~~p~~~~ 511 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMY------VKTLETLILDFN-DLTGEIPSG-LSNCTNLNWISLSNN-RLTGEIPKWIG 511 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGG------CTTCCEEECCSS-CCCSCCCGG-GGGCTTCCEEECCSS-CCCSCCCGGGG
T ss_pred CCCCCEEECCCCcccCcCCHHHcC------CCCceEEEecCC-cccCcCCHH-HhcCCCCCEEEccCC-ccCCcCChHHh
Confidence 7888888888764221 122222 278888888885 444221111 225788888888888 55432222222
Q ss_pred hccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 356 SMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 356 ~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+++|+.|++++|. ++......+.. +++|+.|++++|.
T Consensus 512 ---------~l~~L~~L~L~~N~-l~~~~p~~l~~--l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 512 ---------RLENLAILKLSNNS-FSGNIPAELGD--CRSLIWLDLNTNL 549 (768)
T ss_dssp ---------GCTTCCEEECCSSC-CEEECCGGGGG--CTTCCEEECCSSE
T ss_pred ---------cCCCCCEEECCCCc-ccCcCCHHHcC--CCCCCEEECCCCc
Confidence 47888888888887 55333334443 7888888888875
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=2e-18 Score=174.59 Aligned_cols=191 Identities=15% Similarity=0.181 Sum_probs=116.8
Q ss_pred hHHHHHHhhhhccceeeccccchhhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHHHHcCCCccEEe
Q 011710 11 NFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLD 90 (479)
Q Consensus 11 ~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 90 (479)
.+..++..+++.+++|++++........- ....+++|++|+++++.+.......+ ..+++|++|+
T Consensus 16 ~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~--------------~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~ 80 (549)
T 2z81_A 16 SFTSIPSGLTAAMKSLDLSFNKITYIGHG--------------DLRACANLQVLILKSSRINTIEGDAF-YSLGSLEHLD 80 (549)
T ss_dssp CCSSCCSCCCTTCCEEECCSSCCCEECSS--------------TTSSCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEE
T ss_pred ccccccccCCCCccEEECcCCccCccChh--------------hhhcCCcccEEECCCCCcCccChhhc-cccccCCEEE
Confidence 34444444556777777775432211100 12447899999999887776433333 3788999999
Q ss_pred ccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHH
Q 011710 91 LRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFK 170 (479)
Q Consensus 91 l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~ 170 (479)
+++|. ++......+..+++|++|+++++. +..+. .......+++|+.|+++++..++.....
T Consensus 81 Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~---~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 142 (549)
T 2z81_A 81 LSDNH---------LSSLSSSWFGPLSSLKYLNLMGNP------YQTLG---VTSLFPNLTNLQTLRIGNVETFSEIRRI 142 (549)
T ss_dssp CTTSC---------CCSCCHHHHTTCTTCCEEECTTCC------CSSSC---SSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred CCCCc---------cCccCHHHhccCCCCcEEECCCCc------ccccc---hhhhhhccCCccEEECCCCccccccCHh
Confidence 99884 333333457788999999997531 11111 1111245788999999885434432111
Q ss_pred HHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCC
Q 011710 171 TILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDC 238 (479)
Q Consensus 171 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 238 (479)
. +..+++|++|+++++.. .... ......+++|++|+++++ .....+...+..+++|+.|+++++
T Consensus 143 ~-~~~l~~L~~L~L~~n~l-~~~~-~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 143 D-FAGLTSLNELEIKALSL-RNYQ-SQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp T-TTTCCEEEEEEEEETTC-CEEC-TTTTTTCSEEEEEEEECS-BSTTHHHHHHHSTTTBSEEEEESC
T ss_pred h-hhcccccCeeeccCCcc-cccC-hhhhhccccCceEecccC-cccccchhhHhhcccccEEEccCC
Confidence 2 35688999999987653 2111 112335678999999884 444444444457899999999885
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.74 E-value=3e-20 Score=190.31 Aligned_cols=301 Identities=19% Similarity=0.163 Sum_probs=184.7
Q ss_pred CCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccc
Q 011710 60 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 139 (479)
Q Consensus 60 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 139 (479)
+|++|+++.+.+.......+ ..+++|++|++++|. ++. ....+..+++|++|+++++ .+..+.
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~---------l~~-lp~~l~~l~~L~~L~l~~n------~l~~~~ 317 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTF-HCFSGLQELDLTATH---------LSE-LPSGLVGLSTLKKLVLSAN------KFENLC 317 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTT-TTCTTCSEEECTTSC---------CSC-CCSSCCSCTTCCEEECTTC------CCSBGG
T ss_pred ceeEEEeecCccCccCHHHh-ccccCCCEEeccCCc---------cCC-CChhhcccccCCEEECccC------CcCcCc
Confidence 67888888776655332222 367888889888874 221 1123557788888888652 122221
Q ss_pred hHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHH
Q 011710 140 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH 219 (479)
Q Consensus 140 ~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 219 (479)
... ...+++|+.|+++++ .+........+..+++|++|+++++..............+++|+.|+++++ .+...
T Consensus 318 ~~~----~~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 391 (606)
T 3t6q_A 318 QIS----ASNFPSLTHLSIKGN-TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSL 391 (606)
T ss_dssp GGC----GGGCTTCSEEECCSC-SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEE
T ss_pred hhh----hhccCcCCEEECCCC-CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcC
Confidence 111 145788999988885 333111111235678888888887653221100112346778889988885 44433
Q ss_pred HHHHhhcCCCCCEEecCCCCCCChHH-HHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHH
Q 011710 220 AIKSLASNTGIKVLDLRDCKNLGDEA-LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCIS 298 (479)
Q Consensus 220 ~~~~l~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~ 298 (479)
....+..+++|+.|++++| .+.... ...+..+++|+.|++++|.++......+.. +++|++|+++++. ++...+.
T Consensus 392 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~-l~~~~~~ 467 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--LPALQHLNLQGNH-FPKGNIQ 467 (606)
T ss_dssp CTTTTTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT--CTTCCEEECTTCB-CGGGEEC
T ss_pred CHHHhcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC--CCCCCEEECCCCC-CCccccc
Confidence 3344567888999998885 343322 233667888999999888776544443444 8889999998864 3321110
Q ss_pred --HHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccC
Q 011710 299 --ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 376 (479)
Q Consensus 299 --~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 376 (479)
.... .+++|++|++++| .++......+ ..+++|+.|++++| .++......+. .+++| .|++++
T Consensus 468 ~~~~~~--~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~---------~l~~L-~L~L~~ 532 (606)
T 3t6q_A 468 KTNSLQ--TLGRLEILVLSFC-DLSSIDQHAF-TSLKMMNHVDLSHN-RLTSSSIEALS---------HLKGI-YLNLAS 532 (606)
T ss_dssp SSCGGG--GCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCCGGGGGGGT---------TCCSC-EEECCS
T ss_pred cchhhc--cCCCccEEECCCC-ccCccChhhh-ccccCCCEEECCCC-ccCcCChhHhC---------ccccc-EEECcC
Confidence 0111 2278899999885 5553222222 25788999999888 66665444433 47788 888888
Q ss_pred CCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 377 CGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 377 c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
|. ++......+.. +++|+.|++++|+
T Consensus 533 N~-l~~~~~~~~~~--l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 533 NH-ISIILPSLLPI--LSQQRTINLRQNP 558 (606)
T ss_dssp SC-CCCCCGGGHHH--HHTSSEEECTTCC
T ss_pred Cc-ccccCHhhccc--CCCCCEEeCCCCC
Confidence 87 66433333333 6788999998876
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.74 E-value=1.2e-19 Score=190.26 Aligned_cols=235 Identities=18% Similarity=0.081 Sum_probs=152.0
Q ss_pred HcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcC
Q 011710 148 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN 227 (479)
Q Consensus 148 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 227 (479)
..+++|+.|+++++ .+....... +..+++|+.|++++|..... +......+++|+.|++++| .+.......+..+
T Consensus 415 ~~l~~L~~L~Ls~N-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l 489 (768)
T 3rgz_A 415 SNCSELVSLHLSFN-YLSGTIPSS-LGSLSKLRDLKLWLNMLEGE--IPQELMYVKTLETLILDFN-DLTGEIPSGLSNC 489 (768)
T ss_dssp GGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCCSC--CCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGC
T ss_pred hcCCCCCEEECcCC-cccCcccHH-HhcCCCCCEEECCCCcccCc--CCHHHcCCCCceEEEecCC-cccCcCCHHHhcC
Confidence 45788888888884 444321222 35678888888887764211 1112345678899999885 4443333346688
Q ss_pred CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC--HHHHHH------
Q 011710 228 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISA------ 299 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~--~~~~~~------ 299 (479)
++|+.|++++| .+.......+..+++|+.|++++|.+.......+.. +++|+.|++++|.... +..+..
T Consensus 490 ~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 490 TNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp TTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG--CTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred CCCCEEEccCC-ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC--CCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 89999999885 565555566778889999999998876544444444 8889999988764211 111000
Q ss_pred ----------------------------------------Hh------------------ccCCCCCccEEecCCCCCCC
Q 011710 300 ----------------------------------------LF------------------DGTSKLQLQELDLSNLPHLS 321 (479)
Q Consensus 300 ----------------------------------------l~------------------~~~~~~~L~~L~l~~~~~l~ 321 (479)
+. ....+++|++|+++++ .++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~ 645 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLS 645 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCB
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-ccc
Confidence 00 0011367899999984 554
Q ss_pred HHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEe
Q 011710 322 DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGV 401 (479)
Q Consensus 322 ~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l 401 (479)
......+ ..+++|+.|++++| .++......+. .+++|+.|++++|. ++......+.. +++|+.|++
T Consensus 646 g~ip~~l-~~l~~L~~L~Ls~N-~l~g~ip~~l~---------~L~~L~~LdLs~N~-l~g~ip~~l~~--l~~L~~L~l 711 (768)
T 3rgz_A 646 GYIPKEI-GSMPYLFILNLGHN-DISGSIPDEVG---------DLRGLNILDLSSNK-LDGRIPQAMSA--LTMLTEIDL 711 (768)
T ss_dssp SCCCGGG-GGCTTCCEEECCSS-CCCSCCCGGGG---------GCTTCCEEECCSSC-CEECCCGGGGG--CCCCSEEEC
T ss_pred ccCCHHH-hccccCCEEeCcCC-ccCCCCChHHh---------CCCCCCEEECCCCc-ccCcCChHHhC--CCCCCEEEC
Confidence 2211222 26899999999999 66543333333 58899999999998 66444445544 889999999
Q ss_pred cCCC
Q 011710 402 TGSV 405 (479)
Q Consensus 402 ~~~~ 405 (479)
++|.
T Consensus 712 s~N~ 715 (768)
T 3rgz_A 712 SNNN 715 (768)
T ss_dssp CSSE
T ss_pred cCCc
Confidence 9986
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=3.1e-18 Score=173.20 Aligned_cols=85 Identities=14% Similarity=0.185 Sum_probs=41.7
Q ss_pred CCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHH---hhhcCCCCcEEEccCCCCchHHH-HHHHhhc
Q 011710 202 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALR---AISSLPQLKILLLDGSDISDVGV-SYLRLTV 277 (479)
Q Consensus 202 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~---~l~~l~~L~~L~l~~~~l~~~~l-~~l~~~~ 277 (479)
.++|+.|+++++ .+...+...+..+++|+.|++++| .+...... .+..+++|+.|++++|.++.... ..... .
T Consensus 309 ~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~ 385 (549)
T 2z81_A 309 LEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL-T 385 (549)
T ss_dssp STTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG-G
T ss_pred cccceEEEeccC-ccccCCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhh-c
Confidence 345666666663 333322222234566666666663 44443322 23455666666666665554321 11112 3
Q ss_pred CCCccEEecCCC
Q 011710 278 ITSLVKLSLRGC 289 (479)
Q Consensus 278 ~~~L~~L~l~~~ 289 (479)
+++|+.|++++|
T Consensus 386 l~~L~~L~Ls~N 397 (549)
T 2z81_A 386 LKNLTSLDISRN 397 (549)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEEECCCC
Confidence 566666666664
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=2.1e-18 Score=174.76 Aligned_cols=157 Identities=14% Similarity=0.187 Sum_probs=95.5
Q ss_pred hcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHH-HHHHHhhcCCCccEEecCCCCCCCHHHHHHHhcc
Q 011710 225 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVG-VSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG 303 (479)
Q Consensus 225 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~-l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 303 (479)
..+++|++|+++++ .+.......+..+++|+.|++++|.++... +..... .+++|+.|+++++. ++.......+.
T Consensus 350 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~-l~~~~~~~~~~- 425 (562)
T 3a79_B 350 PSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNS-LNSHAYDRTCA- 425 (562)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSC-CBSCCSSCCCC-
T ss_pred cCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCc-CCCccChhhhc-
Confidence 45677888888774 555544556677888888888888776532 222222 47888888888754 32100000111
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhcC-CCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCH
Q 011710 304 TSKLQLQELDLSNLPHLSDNGILTLATCR-VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ 382 (479)
Q Consensus 304 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~ 382 (479)
.+++|++|+++++ .++.... ..+ ++|+.|++++| .++ .+....+ .+++|+.|++++|. ++.
T Consensus 426 -~l~~L~~L~l~~n-~l~~~~~----~~l~~~L~~L~L~~N-~l~-----~ip~~~~-----~l~~L~~L~L~~N~-l~~ 487 (562)
T 3a79_B 426 -WAESILVLNLSSN-MLTGSVF----RCLPPKVKVLDLHNN-RIM-----SIPKDVT-----HLQALQELNVASNQ-LKS 487 (562)
T ss_dssp -CCTTCCEEECCSS-CCCGGGG----SSCCTTCSEEECCSS-CCC-----CCCTTTT-----SSCCCSEEECCSSC-CCC
T ss_pred -CcccCCEEECCCC-CCCcchh----hhhcCcCCEEECCCC-cCc-----ccChhhc-----CCCCCCEEECCCCC-CCC
Confidence 2277888888884 5654322 234 57888888888 555 1222112 47788888888887 663
Q ss_pred HHHHHhhccCCCCccEEEecCCC
Q 011710 383 LAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 383 ~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.....+. .+++|+.|++++|+
T Consensus 488 l~~~~~~--~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 488 VPDGVFD--RLTSLQYIWLHDNP 508 (562)
T ss_dssp CCTTSTT--TCTTCCCEECCSCC
T ss_pred CCHHHHh--cCCCCCEEEecCCC
Confidence 2222232 47888888888876
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=4.1e-19 Score=184.42 Aligned_cols=339 Identities=15% Similarity=0.108 Sum_probs=157.7
Q ss_pred hHHHHHHhhhhccceeeccccchhhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHHHHcCCCccEEe
Q 011710 11 NFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLD 90 (479)
Q Consensus 11 ~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 90 (479)
.+..++..+|+++++|++++......... ....+++|++|+++.+.+.......+ ..+++|++|+
T Consensus 15 ~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~--------------~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~ 79 (680)
T 1ziw_A 15 KLTQVPDDLPTNITVLNLTHNQLRRLPAA--------------NFTRYSQLTSLDVGFNTISKLEPELC-QKLPMLKVLN 79 (680)
T ss_dssp CCSSCCSCSCTTCSEEECCSSCCCCCCGG--------------GGGGGTTCSEEECCSSCCCCCCTTHH-HHCTTCCEEE
T ss_pred CccccccccCCCCcEEECCCCCCCCcCHH--------------HHhCCCcCcEEECCCCccCccCHHHH-hcccCcCEEE
Confidence 34444555667888888874321111100 01235677777777665554333333 3567777777
Q ss_pred ccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHH
Q 011710 91 LRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFK 170 (479)
Q Consensus 91 l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~ 170 (479)
+++|. ++......+..+++|++|+++.+ .+..+....+ ..+++|+.|+++++ .+......
T Consensus 80 L~~n~---------l~~l~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~----~~l~~L~~L~Ls~n-~l~~~~~~ 139 (680)
T 1ziw_A 80 LQHNE---------LSQLSDKTFAFCTNLTELHLMSN------SIQKIKNNPF----VKQKNLITLDLSHN-GLSSTKLG 139 (680)
T ss_dssp CCSSC---------CCCCCTTTTTTCTTCSEEECCSS------CCCCCCSCTT----TTCTTCCEEECCSS-CCSCCCCC
T ss_pred CCCCc---------cCccChhhhccCCCCCEEECCCC------ccCccChhHc----cccCCCCEEECCCC-cccccCch
Confidence 77663 22211123455666666666542 1122221111 34566666666663 33322111
Q ss_pred HHHHhCCCCceEEecCCCCCCHHHHHHHH-hcCCCccEEEccCCCCCCHHHHHHhhc-----------------------
Q 011710 171 TILHSCSNLYKLRVSHGTQLTDLVFHDIS-ATSLSLTHVCLRWCNLLTNHAIKSLAS----------------------- 226 (479)
Q Consensus 171 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~----------------------- 226 (479)
. ...+++|++|+++++.. .......+. ..+++|+.|+++++ .+.......+..
T Consensus 140 ~-~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 216 (680)
T 1ziw_A 140 T-QVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216 (680)
T ss_dssp S-SSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHH
T ss_pred h-hcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHH
Confidence 1 13455666666665532 111111111 13345666666553 222221122222
Q ss_pred ----CCCCCEEecCCCCCCChHHHHhhhcC--CCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHH
Q 011710 227 ----NTGIKVLDLRDCKNLGDEALRAISSL--PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISAL 300 (479)
Q Consensus 227 ----~~~L~~L~l~~~~~l~~~~~~~l~~l--~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l 300 (479)
.++|+.|+++++ .+.......+..+ ++|+.|++++|.++......+.. +++|++|+++++. ++......+
T Consensus 217 ~~l~~~~L~~L~L~~n-~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~-l~~~~~~~~ 292 (680)
T 1ziw_A 217 LELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW--LPQLEYFFLEYNN-IQHLFSHSL 292 (680)
T ss_dssp HHHTTSCCCEEECTTS-CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSCC-BSEECTTTT
T ss_pred HHhhhccccEEEccCC-cccccChhHhhccCcCCCCEEECCCCCcCccCcccccC--cccccEeeCCCCc-cCccChhhh
Confidence 355666666653 3433333334433 33777777777665433333333 6677777776643 321111111
Q ss_pred hccCCCCCccEEecCCCCCCCHHHHHH-------HHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEE
Q 011710 301 FDGTSKLQLQELDLSNLPHLSDNGILT-------LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLD 373 (479)
Q Consensus 301 ~~~~~~~~L~~L~l~~~~~l~~~~~~~-------l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~ 373 (479)
. .+++|++|+++++..-....... ....+++|+.|++++| .++......+. .+++|++|+
T Consensus 293 -~--~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~ 359 (680)
T 1ziw_A 293 -H--GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFT---------GLINLKYLS 359 (680)
T ss_dssp -T--TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTT---------TCTTCCEEE
T ss_pred -c--CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhc---------cccCCcEEE
Confidence 1 22677777776531111100000 1124677777777777 44432111111 467777777
Q ss_pred ccCCCCCCHH--HHHHhhccCCCCccEEEecCCC
Q 011710 374 LYNCGGITQL--AFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 374 l~~c~~i~~~--~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
+++|. ++.. ....+.....++|+.|++++|.
T Consensus 360 Ls~n~-~~~~~l~~~~f~~~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 360 LSNSF-TSLRTLTNETFVSLAHSPLHILNLTKNK 392 (680)
T ss_dssp CTTCB-SCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred CCCCc-hhhhhcchhhhcccccCcCceEECCCCC
Confidence 77764 2110 0011111013578888887775
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=1.8e-18 Score=167.17 Aligned_cols=161 Identities=18% Similarity=0.142 Sum_probs=100.1
Q ss_pred CCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011710 227 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 306 (479)
Q Consensus 227 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 306 (479)
.++|+.|+++++ .+.... ....++|+.|++++|.+++. ..+. .+++|+.|+++++. ++......+. .+
T Consensus 204 ~~~L~~L~l~~n-~l~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~--~l~~L~~L~Ls~n~-l~~~~~~~~~---~l 271 (390)
T 3o6n_A 204 PIAVEELDASHN-SINVVR---GPVNVELTILKLQHNNLTDT--AWLL--NYPGLVEVDLSYNE-LEKIMYHPFV---KM 271 (390)
T ss_dssp CSSCSEEECCSS-CCCEEE---CCCCSSCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSSC-CCEEESGGGT---TC
T ss_pred CCcceEEECCCC-eeeecc---ccccccccEEECCCCCCccc--HHHc--CCCCccEEECCCCc-CCCcChhHcc---cc
Confidence 345666666553 333221 12346889999999887764 3343 48999999999864 4422111111 23
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHH
Q 011710 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 386 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~ 386 (479)
++|++|+++++ .++.... ....+++|+.|++++| .++... ..+. .+++|+.|++++|. ++...
T Consensus 272 ~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~-~~~~---------~l~~L~~L~L~~N~-i~~~~-- 334 (390)
T 3o6n_A 272 QRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVE-RNQP---------QFDRLENLYLDHNS-IVTLK-- 334 (390)
T ss_dssp SSCCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCG-GGHH---------HHTTCSEEECCSSC-CCCCC--
T ss_pred ccCCEEECCCC-cCcccCc--ccCCCCCCCEEECCCC-cceecC-cccc---------ccCcCCEEECCCCc-cceeC--
Confidence 88999999984 6653211 1235789999999999 555221 1122 46789999999998 65432
Q ss_pred HhhccCCCCccEEEecCCC-CHHHHHHHHhcCCC
Q 011710 387 WLKKPYFPRLRWLGVTGSV-NRDILDALARSRPF 419 (479)
Q Consensus 387 ~l~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~p~ 419 (479)
+ ..+++|+.|++++|+ .-.....+....+.
T Consensus 335 -~--~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~ 365 (390)
T 3o6n_A 335 -L--STHHTLKNLTLSHNDWDCNSLRALFRNVAR 365 (390)
T ss_dssp -C--CTTCCCSEEECCSSCEEHHHHHHHTTTCCT
T ss_pred -c--hhhccCCEEEcCCCCccchhHHHHHHHHHh
Confidence 2 258999999999998 33344444444443
No 31
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=1.5e-16 Score=151.80 Aligned_cols=146 Identities=19% Similarity=0.174 Sum_probs=71.8
Q ss_pred CCCCEEecCCCCCCChHHHHh----hhcCC-CCcEEEccCCCCchHHHHHHHh--hcC-CCccEEecCCCCCCCHHHHHH
Q 011710 228 TGIKVLDLRDCKNLGDEALRA----ISSLP-QLKILLLDGSDISDVGVSYLRL--TVI-TSLVKLSLRGCKRLTDKCISA 299 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~----l~~l~-~L~~L~l~~~~l~~~~l~~l~~--~~~-~~L~~L~l~~~~~l~~~~~~~ 299 (479)
++|++|++++| .+++.+... +..++ +|+.|++++|.+++.+...+.. ..+ ++|++|++++|. +++.+...
T Consensus 138 ~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~ 215 (362)
T 3goz_A 138 ASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAE 215 (362)
T ss_dssp TTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred CceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHH
Confidence 35555555553 344322222 22333 5666666666555444332222 023 356666665532 44322222
Q ss_pred HhccC--CCCCccEEecCCCCCCCHHHH---HHHHhcCCCCcEEecCCCC--CCCHHHHHHHHhccccCCCcCCCCceEE
Q 011710 300 LFDGT--SKLQLQELDLSNLPHLSDNGI---LTLATCRVPISELRVRQCP--LIGDTSVIALASMLVDDDRWYGSSIRLL 372 (479)
Q Consensus 300 l~~~~--~~~~L~~L~l~~~~~l~~~~~---~~l~~~~~~L~~L~l~~~~--~l~~~~~~~l~~~~~~~~~~~~~~L~~L 372 (479)
++... ..++|++|+++++ .+++.+. ..+...+++|+.|++++|. .+++.++..+...+. .+++|+.|
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~-----~l~~L~~L 289 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP-----NIQKIILV 289 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST-----TCCEEEEE
T ss_pred HHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc-----cCCceEEE
Confidence 11100 0146777777663 5554333 3333445667777777662 266666666665444 46667777
Q ss_pred EccCCCCCCH
Q 011710 373 DLYNCGGITQ 382 (479)
Q Consensus 373 ~l~~c~~i~~ 382 (479)
++++|. +.+
T Consensus 290 dL~~N~-l~~ 298 (362)
T 3goz_A 290 DKNGKE-IHP 298 (362)
T ss_dssp CTTSCB-CCG
T ss_pred ecCCCc-CCC
Confidence 777776 544
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=1.2e-17 Score=161.17 Aligned_cols=271 Identities=20% Similarity=0.166 Sum_probs=176.1
Q ss_pred CCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccccccccccccc
Q 011710 57 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 136 (479)
Q Consensus 57 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 136 (479)
.+++|++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++ .+.
T Consensus 91 ~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~---------l~~l~~~~~~~l~~L~~L~L~~n------~l~ 154 (390)
T 3o6n_A 91 YAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERND---------LSSLPRGIFHNTPKLTTLSMSNN------NLE 154 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSS------CCC
T ss_pred CCCCcCEEECCCCCCCcCCHHHh-cCCCCCCEEECCCCc---------cCcCCHHHhcCCCCCcEEECCCC------ccC
Confidence 36778888888776665322222 367788888888774 22211112456778888888642 122
Q ss_pred ccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCC
Q 011710 137 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 216 (479)
Q Consensus 137 ~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (479)
.+....+ ..+++|+.|+++++ .++... ...+++|+.|+++++.. .. ....++|++|+++++ .+
T Consensus 155 ~~~~~~~----~~l~~L~~L~l~~n-~l~~~~----~~~l~~L~~L~l~~n~l-~~------~~~~~~L~~L~l~~n-~l 217 (390)
T 3o6n_A 155 RIEDDTF----QATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNLL-ST------LAIPIAVEELDASHN-SI 217 (390)
T ss_dssp BCCTTTT----SSCTTCCEEECCSS-CCSBCC----GGGCTTCSEEECCSSCC-SE------EECCSSCSEEECCSS-CC
T ss_pred ccChhhc----cCCCCCCEEECCCC-cCCccc----cccccccceeecccccc-cc------cCCCCcceEEECCCC-ee
Confidence 2222211 34677888888873 555432 24577888888877642 21 123457889998884 44
Q ss_pred CHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHH
Q 011710 217 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 296 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~ 296 (479)
...+ ....++|+.|++++| .++.. ..+..+++|+.|++++|.++......+.. +++|+.|+++++. ++...
T Consensus 218 ~~~~---~~~~~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~-l~~~~ 288 (390)
T 3o6n_A 218 NVVR---GPVNVELTILKLQHN-NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK--MQRLERLYISNNR-LVALN 288 (390)
T ss_dssp CEEE---CCCCSSCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT--CSSCCEEECCSSC-CCEEE
T ss_pred eecc---ccccccccEEECCCC-CCccc--HHHcCCCCccEEECCCCcCCCcChhHccc--cccCCEEECCCCc-CcccC
Confidence 3321 124679999999996 55543 56788999999999999888654444554 8999999999964 44211
Q ss_pred HHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccC
Q 011710 297 ISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 376 (479)
Q Consensus 297 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 376 (479)
.. ...+++|++|++++| .+..... .+ ..+++|+.|++++| .++... .. .+++|+.|++++
T Consensus 289 --~~--~~~l~~L~~L~L~~n-~l~~~~~-~~-~~l~~L~~L~L~~N-~i~~~~----~~--------~~~~L~~L~l~~ 348 (390)
T 3o6n_A 289 --LY--GQPIPTLKVLDLSHN-HLLHVER-NQ-PQFDRLENLYLDHN-SIVTLK----LS--------THHTLKNLTLSH 348 (390)
T ss_dssp --CS--SSCCTTCCEEECCSS-CCCCCGG-GH-HHHTTCSEEECCSS-CCCCCC----CC--------TTCCCSEEECCS
T ss_pred --cc--cCCCCCCCEEECCCC-cceecCc-cc-cccCcCCEEECCCC-ccceeC----ch--------hhccCCEEEcCC
Confidence 00 123489999999995 5552211 11 25789999999999 555432 12 689999999999
Q ss_pred CCCCCHHHHHHhhc
Q 011710 377 CGGITQLAFRWLKK 390 (479)
Q Consensus 377 c~~i~~~~~~~l~~ 390 (479)
|+ ++......+..
T Consensus 349 N~-~~~~~~~~~~~ 361 (390)
T 3o6n_A 349 ND-WDCNSLRALFR 361 (390)
T ss_dssp SC-EEHHHHHHHTT
T ss_pred CC-ccchhHHHHHH
Confidence 99 88777666644
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.71 E-value=3.9e-19 Score=182.10 Aligned_cols=182 Identities=15% Similarity=0.084 Sum_probs=103.0
Q ss_pred cCCCccEEEccCCCCCCHHH--HHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHH-HHHHhhc
Q 011710 201 TSLSLTHVCLRWCNLLTNHA--IKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGV-SYLRLTV 277 (479)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l-~~l~~~~ 277 (479)
.+++|+.|+++++ .+...+ ...+..+++|+.|++++| .+.... ..+..+++|+.|++++|.+..... ..+. .
T Consensus 348 ~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~ 422 (606)
T 3vq2_A 348 ALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFL--S 422 (606)
T ss_dssp CCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSC-SEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTT--T
T ss_pred cCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCC-ccccch-hhccCCCCCCeeECCCCccCCccChhhhh--c
Confidence 4567777777774 333221 223557888888888885 343322 455677888888888886654432 2222 3
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhc
Q 011710 278 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASM 357 (479)
Q Consensus 278 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 357 (479)
+++|+.|++++|. ++......+ . .+++|++|++++| .+....+......+++|+.|++++| .++......+.
T Consensus 423 l~~L~~L~l~~n~-l~~~~~~~~-~--~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-- 494 (606)
T 3vq2_A 423 LEKLLYLDISYTN-TKIDFDGIF-L--GLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFD-- 494 (606)
T ss_dssp CTTCCEEECTTSC-CEECCTTTT-T--TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTT--
T ss_pred cccCCEEECcCCC-CCccchhhh-c--CCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhc--
Confidence 7788888887754 321111111 1 2267777777774 4433211112225677777777777 44432221121
Q ss_pred cccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 358 LVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 358 ~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+++|+.|++++|. ++......+. .+++|+.|++++|.
T Consensus 495 -------~l~~L~~L~Ls~N~-l~~~~~~~~~--~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 495 -------TLHRLQLLNMSHNN-LLFLDSSHYN--QLYSLSTLDCSFNR 532 (606)
T ss_dssp -------TCTTCCEEECCSSC-CSCEEGGGTT--TCTTCCEEECTTSC
T ss_pred -------ccccCCEEECCCCc-CCCcCHHHcc--CCCcCCEEECCCCc
Confidence 46777777777776 5543333333 26777777777775
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=2.2e-19 Score=184.22 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=17.9
Q ss_pred CCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 365 YGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 365 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+++|+.|++++|. ++. +.....++|+.|++++|+
T Consensus 564 ~l~~L~~L~Ls~N~-l~~-----ip~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 564 LCPSLTQLQIGSND-IRK-----VNEKITPNISVLDIKDNP 598 (636)
T ss_dssp GCSSCCEEECCSSC-CCB-----CCSCCCTTCCEEECCSCT
T ss_pred cCCCCCEEECCCCc-CCc-----cCHhHhCcCCEEECcCCC
Confidence 35566666666665 321 111123566666666664
No 35
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=3.1e-16 Score=149.60 Aligned_cols=269 Identities=17% Similarity=0.110 Sum_probs=163.1
Q ss_pred EEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHH----HhhhcCC-CccEEeccccccccccccccc
Q 011710 64 LCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGL----QQINQHG-KLKHLSLIRSQEFLITYFRRV 138 (479)
Q Consensus 64 L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~ 138 (479)
+.++.+.++.. ++.+....++|++|++++|. ++.... ..+..++ +|++|+++++ .+...
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~---------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N------~l~~~ 66 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNN---------LYSISTVELIQAFANTPASVTSLNLSGN------SLGFK 66 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTSC---------GGGSCHHHHHHHHHTCCTTCCEEECCSS------CGGGS
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCCC---------CChHHHHHHHHHHHhCCCceeEEECcCC------CCCHH
Confidence 44555666543 44444455558888888874 444333 4555677 7888888652 12222
Q ss_pred chHHHHHHHHc-CCCCCeEEEcCCCccCHHHHH---HHHHhC-CCCceEEecCCCCCCHHHHHH---HHhc-CCCccEEE
Q 011710 139 NDLGILLMADK-CASMESICLGGFCRVTDTGFK---TILHSC-SNLYKLRVSHGTQLTDLVFHD---ISAT-SLSLTHVC 209 (479)
Q Consensus 139 ~~~~l~~l~~~-~~~L~~L~l~~~~~l~~~~~~---~l~~~~-~~L~~L~l~~~~~~~~~~~~~---~~~~-~~~L~~L~ 209 (479)
....+..+... +++|+.|++++| .+++.... ..+..+ ++|++|++++|. ++..+... .... .++|++|+
T Consensus 67 ~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~ 144 (362)
T 3goz_A 67 NSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLN 144 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEE
T ss_pred HHHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEE
Confidence 22333333333 378888888884 55543333 333444 788888888776 33333332 2333 45899999
Q ss_pred ccCCCCCCHHHHHH----hhcCC-CCCEEecCCCCCCChHHHHh----hhcC-CCCcEEEccCCCCchHHHHHHHh---h
Q 011710 210 LRWCNLLTNHAIKS----LASNT-GIKVLDLRDCKNLGDEALRA----ISSL-PQLKILLLDGSDISDVGVSYLRL---T 276 (479)
Q Consensus 210 l~~~~~~~~~~~~~----l~~~~-~L~~L~l~~~~~l~~~~~~~----l~~l-~~L~~L~l~~~~l~~~~l~~l~~---~ 276 (479)
+++| .+++.+... +..++ +|++|++++| .+++.+... +..+ ++|+.|++++|.+++.+...+.. .
T Consensus 145 Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 145 LRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp CTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred ccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 9884 565433333 33555 8999999885 565554433 3355 48999999999888755543333 1
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHhcc-CCCCCccEEecCCCC--CCCHHHHHHHHhcC---CCCcEEecCCCCCCCHHH
Q 011710 277 VITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLP--HLSDNGILTLATCR---VPISELRVRQCPLIGDTS 350 (479)
Q Consensus 277 ~~~~L~~L~l~~~~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~--~l~~~~~~~l~~~~---~~L~~L~l~~~~~l~~~~ 350 (479)
..++|++|+++++ .+++.+...+... ..+++|++|++++|. .+++.++..+...+ ++|+.|++++| .+.+..
T Consensus 223 ~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~~ 300 (362)
T 3goz_A 223 IPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPSH 300 (362)
T ss_dssp SCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGGG
T ss_pred CCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCcc
Confidence 2458999999985 4665444332221 123789999999862 37777777665544 56778889888 666553
Q ss_pred HHHH
Q 011710 351 VIAL 354 (479)
Q Consensus 351 ~~~l 354 (479)
...+
T Consensus 301 ~~~~ 304 (362)
T 3goz_A 301 SIPI 304 (362)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 3333
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=4.8e-18 Score=173.19 Aligned_cols=211 Identities=18% Similarity=0.162 Sum_probs=113.5
Q ss_pred CCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCC
Q 011710 150 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 229 (479)
Q Consensus 150 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 229 (479)
+++|+.|+++++ .+....... +..+++|+.|+++++.. .... ...+++|+.|+++++ .++ .+...++
T Consensus 146 l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l-~~~~----~~~l~~L~~L~l~~n-~l~-----~l~~~~~ 212 (597)
T 3oja_B 146 TPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSNRL-THVD----LSLIPSLFHANVSYN-LLS-----TLAIPIA 212 (597)
T ss_dssp CTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECTTSCC-SBCC----GGGCTTCSEEECCSS-CCS-----EEECCTT
T ss_pred CCCCCEEEeeCC-cCCCCChhh-hhcCCcCcEEECcCCCC-CCcC----hhhhhhhhhhhcccC-ccc-----cccCCch
Confidence 455555555552 333221111 13455555555555432 1111 223445555555552 222 1223455
Q ss_pred CCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCc
Q 011710 230 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQL 309 (479)
Q Consensus 230 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L 309 (479)
|+.|++++| .+..... ...++|+.|++++|.++.. ..+. .+++|+.|+++++. ++......+. .+++|
T Consensus 213 L~~L~ls~n-~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~--~l~~L~~L~Ls~N~-l~~~~~~~~~---~l~~L 280 (597)
T 3oja_B 213 VEELDASHN-SINVVRG---PVNVELTILKLQHNNLTDT--AWLL--NYPGLVEVDLSYNE-LEKIMYHPFV---KMQRL 280 (597)
T ss_dssp CSEEECCSS-CCCEEEC---SCCSCCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSSC-CCEEESGGGT---TCSSC
T ss_pred hheeeccCC-ccccccc---ccCCCCCEEECCCCCCCCC--hhhc--cCCCCCEEECCCCc-cCCCCHHHhc---CccCC
Confidence 666666653 3322111 1235788888888877653 3333 38888888888854 4322111111 23788
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhh
Q 011710 310 QELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLK 389 (479)
Q Consensus 310 ~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~ 389 (479)
++|+|+++ .++... .....+++|+.|++++| .++... ..+. .+++|+.|++++|. ++... +
T Consensus 281 ~~L~Ls~N-~l~~l~--~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~---------~l~~L~~L~L~~N~-l~~~~---~- 341 (597)
T 3oja_B 281 ERLYISNN-RLVALN--LYGQPIPTLKVLDLSHN-HLLHVE-RNQP---------QFDRLENLYLDHNS-IVTLK---L- 341 (597)
T ss_dssp CEEECTTS-CCCEEE--CSSSCCTTCCEEECCSS-CCCCCG-GGHH---------HHTTCSEEECCSSC-CCCCC---C-
T ss_pred CEEECCCC-CCCCCC--cccccCCCCcEEECCCC-CCCccC-cccc---------cCCCCCEEECCCCC-CCCcC---h-
Confidence 88888884 554311 11234788888888888 554211 1122 46778888888887 54321 2
Q ss_pred ccCCCCccEEEecCCC
Q 011710 390 KPYFPRLRWLGVTGSV 405 (479)
Q Consensus 390 ~~~~~~L~~L~l~~~~ 405 (479)
..+++|+.|++++|+
T Consensus 342 -~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 342 -STHHTLKNLTLSHND 356 (597)
T ss_dssp -CTTCCCSEEECCSSC
T ss_pred -hhcCCCCEEEeeCCC
Confidence 247888899988887
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=2.8e-17 Score=161.36 Aligned_cols=284 Identities=18% Similarity=0.160 Sum_probs=170.9
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccc
Q 011710 56 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 56 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 135 (479)
..+++|++|+++.+.+.... ...+++|++|++++|. ++.. .+..+++|++|+++.+ .+
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~---------l~~~---~~~~l~~L~~L~L~~N------~l 118 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNK---------LTNL---DVTPLTKLTYLNCDTN------KL 118 (457)
T ss_dssp GGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSC---------CSCC---CCTTCTTCCEEECCSS------CC
T ss_pred cccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCC---------Ccee---ecCCCCcCCEEECCCC------cC
Confidence 34678888888877776631 2467888888888874 2221 1567788888888652 12
Q ss_pred cccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 011710 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 215 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (479)
..+. ...+++|+.|+++++ .++... ...+++|+.|+++++..+.... ...+++|+.|+++++ .
T Consensus 119 ~~l~-------~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~ 181 (457)
T 3bz5_A 119 TKLD-------VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-K 181 (457)
T ss_dssp SCCC-------CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-C
T ss_pred Ceec-------CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-c
Confidence 2221 245778888888884 555431 2567788888888775444331 335678888888884 4
Q ss_pred CCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHH
Q 011710 216 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~ 295 (479)
++..+ +..+++|+.|++++| .++.. .+..+++|+.|++++|.++... +. .+++|+.|+++++. ++..
T Consensus 182 l~~l~---l~~l~~L~~L~l~~N-~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~--~l~~L~~L~l~~N~-l~~~ 248 (457)
T 3bz5_A 182 ITELD---VSQNKLLNRLNCDTN-NITKL---DLNQNIQLTFLDCSSNKLTEID---VT--PLTQLTYFDCSVNP-LTEL 248 (457)
T ss_dssp CCCCC---CTTCTTCCEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSCCC---CT--TCTTCSEEECCSSC-CSCC
T ss_pred cceec---cccCCCCCEEECcCC-cCCee---ccccCCCCCEEECcCCcccccC---cc--ccCCCCEEEeeCCc-CCCc
Confidence 44432 567788888888875 45443 3667788888888888777632 33 47888888888753 4322
Q ss_pred HHHHHhcc----CCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHH--HHHHhccccCCCcCCCCc
Q 011710 296 CISALFDG----TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSV--IALASMLVDDDRWYGSSI 369 (479)
Q Consensus 296 ~~~~l~~~----~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~--~~l~~~~~~~~~~~~~~L 369 (479)
....+..- ....+|+.|++++|..+.... ...|++|+.|++++|+.+..... ..+...-. ..+++|
T Consensus 249 ~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l----~~~~~L 320 (457)
T 3bz5_A 249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDL----SQNPKL 320 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCC----TTCTTC
T ss_pred CHHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcceEech----hhcccC
Confidence 11111000 000234444555543222211 12578889999988853221100 00000000 157888
Q ss_pred eEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 370 RLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 370 ~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
+.|++++|. ++.. .+. .+++|+.|++++|.
T Consensus 321 ~~L~L~~N~-l~~l---~l~--~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 321 VYLYLNNTE-LTEL---DVS--HNTKLKSLSCVNAH 350 (457)
T ss_dssp CEEECTTCC-CSCC---CCT--TCTTCSEEECCSSC
T ss_pred CEEECCCCc-cccc---ccc--cCCcCcEEECCCCC
Confidence 999998887 6652 233 48899999998886
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.68 E-value=3.5e-18 Score=177.38 Aligned_cols=206 Identities=18% Similarity=0.201 Sum_probs=97.9
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
+++|++|+++.+.+.......+ ..+++|++|++++|. ++......+..+++|++|+++.+ .+..
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~L~~n------~l~~ 159 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPF-VKQKNLITLDLSHNG---------LSSTKLGTQVQLENLQELLLSNN------KIQA 159 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTT-TTCTTCCEEECCSSC---------CSCCCCCSSSCCTTCCEEECCSS------CCCC
T ss_pred CCCCCEEECCCCccCccChhHc-cccCCCCEEECCCCc---------ccccCchhhcccccCCEEEccCC------cccc
Confidence 5666677666655543211122 356667777766663 22212223445666777766531 1122
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHh--cCCCccEEEccCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISA--TSLSLTHVCLRWCNL 215 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 215 (479)
+....+.. ..+++|+.|+++++ .+....... ...+++|+.|.+.++. +.......+.. ..++|+.|+++++ .
T Consensus 160 ~~~~~~~~--~~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~~~-l~~~~~~~~~~~l~~~~L~~L~L~~n-~ 233 (680)
T 1ziw_A 160 LKSEELDI--FANSSLKKLELSSN-QIKEFSPGC-FHAIGRLFGLFLNNVQ-LGPSLTEKLCLELANTSIRNLSLSNS-Q 233 (680)
T ss_dssp BCHHHHGG--GTTCEESEEECTTC-CCCCBCTTG-GGGSSEECEEECTTCC-CHHHHHHHHHHHHTTSCCCEEECTTS-C
T ss_pred cCHHHhhc--cccccccEEECCCC-cccccChhh-hhhhhhhhhhhccccc-cChhhHHHHHHHhhhccccEEEccCC-c
Confidence 22111110 12466777777663 333221111 2345555555555443 22221221111 2356777777664 3
Q ss_pred CCHHHHHHhhcC--CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCC
Q 011710 216 LTNHAIKSLASN--TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 288 (479)
Q Consensus 216 ~~~~~~~~l~~~--~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~ 288 (479)
+.......+..+ ++|+.|++++| .+.......+..+++|+.|++++|.+.......+.. +++|+.|++++
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~ 305 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG--LFNVRYLNLKR 305 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT--CTTCCEEECTT
T ss_pred ccccChhHhhccCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCccCccChhhhcC--CCCccEEeccc
Confidence 332222223333 34777777664 444444445566677777777776655433222322 56666666654
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2e-18 Score=180.44 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=20.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCC
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDA 94 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 94 (479)
+++|++|+|+.+.+.......+ ..+++|+.|++++|
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTC
T ss_pred CCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCC
Confidence 5666666666554443333222 35666666666665
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.68 E-value=7e-19 Score=178.89 Aligned_cols=340 Identities=16% Similarity=0.121 Sum_probs=191.3
Q ss_pred hHHHHHHhhhhccceeeccccchhhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHHHHcCCCccEEe
Q 011710 11 NFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLD 90 (479)
Q Consensus 11 ~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 90 (479)
.+..++..+|+.++.|++++......... ....+++|++|+++++.+.......+ ..+++|++|+
T Consensus 18 ~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~--------------~~~~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~ 82 (570)
T 2z63_A 18 NFYKIPDNLPFSTKNLDLSFNPLRHLGSY--------------SFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLI 82 (570)
T ss_dssp CCSSCCSSSCSSCCEEECCSCCCCEECTT--------------TTTTCSSCCEEECTTCCCCEECTTTT-TTCTTCCEEE
T ss_pred CccccCCCccccccEEEccCCccCccChh--------------HhhCCCCceEEECCCCcCCccCcccc-cCchhCCEEe
Confidence 34445555666777777765432211110 13448899999999887765433233 4789999999
Q ss_pred ccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHH
Q 011710 91 LRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFK 170 (479)
Q Consensus 91 l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~ 170 (479)
+++|. ++......+..+++|++|+++++ .+..+.... ...+++|+.|+++++ .+....+.
T Consensus 83 L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n------~l~~l~~~~----~~~l~~L~~L~L~~n-~l~~~~lp 142 (570)
T 2z63_A 83 LTGNP---------IQSLALGAFSGLSSLQKLVAVET------NLASLENFP----IGHLKTLKELNVAHN-LIQSFKLP 142 (570)
T ss_dssp CTTCC---------CCEECTTTTTTCTTCCEEECTTS------CCCCSTTCS----CTTCTTCCEEECCSS-CCCCCCCC
T ss_pred CcCCc---------CCccCHhhhcCcccccccccccc------ccccCCCcc----ccccccccEEecCCC-ccceecCh
Confidence 99984 33323345678999999999752 223332222 146899999999995 55432112
Q ss_pred HHHHhCCCCceEEecCCCCC--CHHHHHHHHhc-----------------------CCCccEEEccCCCCCC--------
Q 011710 171 TILHSCSNLYKLRVSHGTQL--TDLVFHDISAT-----------------------SLSLTHVCLRWCNLLT-------- 217 (479)
Q Consensus 171 ~l~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~-----------------------~~~L~~L~l~~~~~~~-------- 217 (479)
..+..+++|++|+++++... ....+..+... ..+|+.|+++++....
T Consensus 143 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 222 (570)
T 2z63_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222 (570)
T ss_dssp GGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHH
T ss_pred hhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhc
Confidence 22367899999999987531 11112211111 0123333333210000
Q ss_pred -------------------------------------------------HHHHHHhhcCCCCCEEecCCCC---------
Q 011710 218 -------------------------------------------------NHAIKSLASNTGIKVLDLRDCK--------- 239 (479)
Q Consensus 218 -------------------------------------------------~~~~~~l~~~~~L~~L~l~~~~--------- 239 (479)
......+..+++|+.|+++++.
T Consensus 223 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~ 302 (570)
T 2z63_A 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302 (570)
T ss_dssp TTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCS
T ss_pred CccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhc
Confidence 0000011123444444443321
Q ss_pred ------------CCChHHHH-------------------hhhcCCCCcEEEccCCCCchHH--HHHHHhhcCCCccEEec
Q 011710 240 ------------NLGDEALR-------------------AISSLPQLKILLLDGSDISDVG--VSYLRLTVITSLVKLSL 286 (479)
Q Consensus 240 ------------~l~~~~~~-------------------~l~~l~~L~~L~l~~~~l~~~~--l~~l~~~~~~~L~~L~l 286 (479)
.+...... ....+++|+.|++++|.++..+ ...+. .+++|+.|++
T Consensus 303 ~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~l 380 (570)
T 2z63_A 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF--GTTSLKYLDL 380 (570)
T ss_dssp CCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHH--TCSCCCEEEC
T ss_pred cCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccc--ccCccCEEEC
Confidence 11100000 0035788999999999877543 22333 4899999999
Q ss_pred CCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCC
Q 011710 287 RGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYG 366 (479)
Q Consensus 287 ~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~ 366 (479)
++|. ++..... .. .+++|++|+++++ .+...........+++|+.|++++| .++......+. .+
T Consensus 381 ~~n~-l~~~~~~--~~--~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l 444 (570)
T 2z63_A 381 SFNG-VITMSSN--FL--GLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFN---------GL 444 (570)
T ss_dssp CSCS-EEEEEEE--EE--TCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTS-CCEECCTTTTT---------TC
T ss_pred CCCc-ccccccc--cc--ccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCC-cccccchhhhh---------cC
Confidence 9864 3211100 11 2389999999985 4432211112336899999999999 44332111111 58
Q ss_pred CCceEEEccCCCCCCHHHH-HHhhccCCCCccEEEecCCCC
Q 011710 367 SSIRLLDLYNCGGITQLAF-RWLKKPYFPRLRWLGVTGSVN 406 (479)
Q Consensus 367 ~~L~~L~l~~c~~i~~~~~-~~l~~~~~~~L~~L~l~~~~~ 406 (479)
++|+.|++++|. +++..+ ..+. .+++|+.|++++|..
T Consensus 445 ~~L~~L~l~~n~-l~~~~~p~~~~--~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 445 SSLEVLKMAGNS-FQENFLPDIFT--ELRNLTFLDLSQCQL 482 (570)
T ss_dssp TTCCEEECTTCE-EGGGEECSCCT--TCTTCCEEECTTSCC
T ss_pred CcCcEEECcCCc-Cccccchhhhh--cccCCCEEECCCCcc
Confidence 899999999997 442111 1222 489999999999973
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.67 E-value=8.1e-18 Score=158.60 Aligned_cols=88 Identities=11% Similarity=-0.032 Sum_probs=40.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHH-
Q 011710 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF- 385 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~- 385 (479)
++|++|+++++ .++.. ..-...+++|+.|++++| .++..+...+..... ....+.|+.|++++|+ +....+
T Consensus 240 ~~L~~L~L~~N-~l~~l--p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~---~~~~~~l~~l~l~~N~-~~~~~i~ 311 (330)
T 1xku_A 240 PHLRELHLNNN-KLVKV--PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGY---NTKKASYSGVSLFSNP-VQYWEIQ 311 (330)
T ss_dssp TTCCEEECCSS-CCSSC--CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSC---CTTSCCCSEEECCSSS-SCGGGSC
T ss_pred CCCCEEECCCC-cCccC--ChhhccCCCcCEEECCCC-cCCccChhhcCCccc---ccccccccceEeecCc-ccccccC
Confidence 55666666553 33311 000124566777777666 444322222211000 0024567777777777 443221
Q ss_pred -HHhhccCCCCccEEEecCC
Q 011710 386 -RWLKKPYFPRLRWLGVTGS 404 (479)
Q Consensus 386 -~~l~~~~~~~L~~L~l~~~ 404 (479)
..+. .+++++.+++++|
T Consensus 312 ~~~f~--~~~~l~~l~L~~N 329 (330)
T 1xku_A 312 PSTFR--CVYVRAAVQLGNY 329 (330)
T ss_dssp GGGGT--TCCCGGGEEC---
T ss_pred ccccc--cccceeEEEeccc
Confidence 2222 3677777777765
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.67 E-value=1.5e-18 Score=177.90 Aligned_cols=304 Identities=10% Similarity=0.000 Sum_probs=161.0
Q ss_pred CCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccch-HHHHhhh------cCCCccEEecccccc
Q 011710 57 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTN-SGLQQIN------QHGKLKHLSLIRSQE 129 (479)
Q Consensus 57 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~l~~l~------~~~~L~~L~l~~~~~ 129 (479)
.+++|++|+++.+.+.......+ ..+++|++|++++|.. ++. .....++ .+++|++|+++++
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~--------l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-- 315 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRG--------ISGEQLKDDWQALADAPVGEKIQIIYIGYN-- 315 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTT--------SCHHHHHHHHHHHHHSGGGGTCCEEECCSS--
T ss_pred ccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCC--------CccccchHHHHhhhccccCCCCCEEECCCC--
Confidence 35677777777665544333333 2567777777777631 332 1222233 2367777777542
Q ss_pred cccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCC-ccEE
Q 011710 130 FLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLS-LTHV 208 (479)
Q Consensus 130 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L 208 (479)
.+..++.. .....+++|+.|+++++ .+..... .+..+++|+.|+++++... .+......+++ |+.|
T Consensus 316 ----~l~~ip~~---~~l~~l~~L~~L~L~~N-~l~g~ip--~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 316 ----NLKTFPVE---TSLQKMKKLGMLECLYN-QLEGKLP--AFGSEIKLASLNLAYNQIT---EIPANFCGFTEQVENL 382 (636)
T ss_dssp ----CCSSCCCH---HHHTTCTTCCEEECCSC-CCEEECC--CCEEEEEESEEECCSSEEE---ECCTTSEEECTTCCEE
T ss_pred ----cCCccCch---hhhccCCCCCEEeCcCC-cCccchh--hhCCCCCCCEEECCCCccc---cccHhhhhhcccCcEE
Confidence 12222210 02245677777777763 4431111 1245667777777765421 11111334456 7777
Q ss_pred EccCCCCCCHHHHHHhh--cCCCCCEEecCCCCCCChHHHHhhh-------cCCCCcEEEccCCCCchHHHHHHHhhcCC
Q 011710 209 CLRWCNLLTNHAIKSLA--SNTGIKVLDLRDCKNLGDEALRAIS-------SLPQLKILLLDGSDISDVGVSYLRLTVIT 279 (479)
Q Consensus 209 ~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~l~~~~~~~l~-------~l~~L~~L~l~~~~l~~~~l~~l~~~~~~ 279 (479)
+++++ .++..+ ..+. .+++|+.|++++| .+.......+. .+++|+.|++++|.++..... +.. .++
T Consensus 383 ~Ls~N-~l~~lp-~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-~~~-~l~ 457 (636)
T 4eco_A 383 SFAHN-KLKYIP-NIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE-LFS-TGS 457 (636)
T ss_dssp ECCSS-CCSSCC-SCCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH-HHH-TTC
T ss_pred EccCC-cCcccc-hhhhhcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHH-HHc-cCC
Confidence 77774 343211 1122 2347888888774 45444334444 566888888888877633222 222 477
Q ss_pred CccEEecCCCCCCCHHHHHHHhccC-----CCCCccEEecCCCCCCCHHHHHHHH-hcCCCCcEEecCCCCCCCHHHHHH
Q 011710 280 SLVKLSLRGCKRLTDKCISALFDGT-----SKLQLQELDLSNLPHLSDNGILTLA-TCRVPISELRVRQCPLIGDTSVIA 353 (479)
Q Consensus 280 ~L~~L~l~~~~~l~~~~~~~l~~~~-----~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~l~~~~~~~ 353 (479)
+|+.|+++++. ++..... .+... .+++|++|+++++ .++... ..+. ..+++|+.|++++| .++. +..
T Consensus 458 ~L~~L~Ls~N~-l~~i~~~-~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp-~~~~~~~l~~L~~L~Ls~N-~l~~--ip~ 530 (636)
T 4eco_A 458 PLSSINLMGNM-LTEIPKN-SLKDENENFKNTYLLTSIDLRFN-KLTKLS-DDFRATTLPYLVGIDLSYN-SFSK--FPT 530 (636)
T ss_dssp CCSEEECCSSC-CSBCCSS-SSEETTEECTTGGGCCEEECCSS-CCCBCC-GGGSTTTCTTCCEEECCSS-CCSS--CCC
T ss_pred CCCEEECCCCC-CCCcCHH-HhccccccccccCCccEEECcCC-cCCccC-hhhhhccCCCcCEEECCCC-CCCC--cCh
Confidence 88888887753 3311000 00000 0127888888884 565211 1121 25788888888888 5553 211
Q ss_pred HHhccccCCCcCCCCceEEEccCCCC-----CCHHHHHHhhccCCCCccEEEecCCCC
Q 011710 354 LASMLVDDDRWYGSSIRLLDLYNCGG-----ITQLAFRWLKKPYFPRLRWLGVTGSVN 406 (479)
Q Consensus 354 l~~~~~~~~~~~~~~L~~L~l~~c~~-----i~~~~~~~l~~~~~~~L~~L~l~~~~~ 406 (479)
.+. .+++|+.|++++|+. +.......+.. +++|+.|++++|..
T Consensus 531 ---~~~-----~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 531 ---QPL-----NSSTLKGFGIRNQRDAQGNRTLREWPEGITL--CPSLTQLQIGSNDI 578 (636)
T ss_dssp ---GGG-----GCSSCCEEECCSCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSCC
T ss_pred ---hhh-----cCCCCCEEECCCCcccccCcccccChHHHhc--CCCCCEEECCCCcC
Confidence 111 578888888865331 22222223333 78888888888863
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=4.1e-17 Score=166.25 Aligned_cols=271 Identities=20% Similarity=0.162 Sum_probs=186.5
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccc
Q 011710 56 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 56 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 135 (479)
..+++|++|+|+++.+.......+ ..+++|++|+|++|. ++......+..+++|++|+++++ .+
T Consensus 96 ~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~---------l~~l~~~~~~~l~~L~~L~Ls~N------~l 159 (597)
T 3oja_B 96 AYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERND---------LSSLPRGIFHNTPKLTTLSMSNN------NL 159 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSS------CC
T ss_pred cCCCCCCEEECCCCcCCCCCHHHH-cCCCCCCEEEeeCCC---------CCCCCHHHhccCCCCCEEEeeCC------cC
Confidence 347899999999887776433223 478999999999985 33211223567899999999753 22
Q ss_pred cccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 011710 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 215 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (479)
..+....+ ..+++|+.|+++++ .++... ...+++|+.|+++++.. .. ....++|+.|+++++ .
T Consensus 160 ~~~~~~~~----~~l~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~l~~n~l-~~------l~~~~~L~~L~ls~n-~ 222 (597)
T 3oja_B 160 ERIEDDTF----QATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNLL-ST------LAIPIAVEELDASHN-S 222 (597)
T ss_dssp CBCCTTTT----TTCTTCCEEECTTS-CCSBCC----GGGCTTCSEEECCSSCC-SE------EECCTTCSEEECCSS-C
T ss_pred CCCChhhh----hcCCcCcEEECcCC-CCCCcC----hhhhhhhhhhhcccCcc-cc------ccCCchhheeeccCC-c
Confidence 33322222 45899999999994 666542 25689999999998753 21 124568999999995 4
Q ss_pred CCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHH
Q 011710 216 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~ 295 (479)
+...+. ...++|+.|++++| .++. ...+..+++|+.|++++|.++......+.. +++|+.|+++++. ++..
T Consensus 223 l~~~~~---~~~~~L~~L~L~~n-~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~Ls~N~-l~~l 293 (597)
T 3oja_B 223 INVVRG---PVNVELTILKLQHN-NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK--MQRLERLYISNNR-LVAL 293 (597)
T ss_dssp CCEEEC---SCCSCCCEEECCSS-CCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT--CSSCCEEECTTSC-CCEE
T ss_pred cccccc---ccCCCCCEEECCCC-CCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC--ccCCCEEECCCCC-CCCC
Confidence 432211 13478999999996 5554 356788999999999999888665555555 8999999999964 4421
Q ss_pred HHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEcc
Q 011710 296 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 375 (479)
Q Consensus 296 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 375 (479)
. .. ...+++|++|+|++| .+.... ..+ ..+++|+.|++++| .++... .. .+++|+.|+++
T Consensus 294 ~--~~--~~~l~~L~~L~Ls~N-~l~~i~-~~~-~~l~~L~~L~L~~N-~l~~~~----~~--------~~~~L~~L~l~ 353 (597)
T 3oja_B 294 N--LY--GQPIPTLKVLDLSHN-HLLHVE-RNQ-PQFDRLENLYLDHN-SIVTLK----LS--------THHTLKNLTLS 353 (597)
T ss_dssp E--CS--SSCCTTCCEEECCSS-CCCCCG-GGH-HHHTTCSEEECCSS-CCCCCC----CC--------TTCCCSEEECC
T ss_pred C--cc--cccCCCCcEEECCCC-CCCccC-ccc-ccCCCCCEEECCCC-CCCCcC----hh--------hcCCCCEEEee
Confidence 1 11 123489999999995 555211 112 25799999999999 554321 12 68999999999
Q ss_pred CCCCCCHHHHHHhh
Q 011710 376 NCGGITQLAFRWLK 389 (479)
Q Consensus 376 ~c~~i~~~~~~~l~ 389 (479)
+|+ ++......+.
T Consensus 354 ~N~-~~~~~~~~~~ 366 (597)
T 3oja_B 354 HND-WDCNSLRALF 366 (597)
T ss_dssp SSC-EEHHHHHHHT
T ss_pred CCC-CCChhHHHHH
Confidence 998 7766555443
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.66 E-value=5.3e-18 Score=171.83 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=70.1
Q ss_pred hcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCH-HHHHHHhccCCCCCccEEecCCCCCCCHHHHHHH
Q 011710 250 SSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD-KCISALFDGTSKLQLQELDLSNLPHLSDNGILTL 328 (479)
Q Consensus 250 ~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l 328 (479)
..+++|+.|++++|.++......+. .+++|+.|+++++. ++. ..+...+. .+++|++|+++++ .++.......
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~~--~l~~L~~L~l~~N-~l~~~~~~~~ 423 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNG-LKNFFKVALMTK--NMSSLETLDVSLN-SLNSHAYDRT 423 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSSC-CCBTTHHHHTTT--TCTTCCEEECTTS-CCBSCCSSCC
T ss_pred cCCCCceEEECCCCccccchhhhhc--ccCCCCEEECCCCC-cCCcccchhhhc--CCCCCCEEECCCC-cCCCccChhh
Confidence 3556677777777766653333333 36677777777643 332 11111111 2267777777763 4432111111
Q ss_pred HhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCC-CCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 329 ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYG-SSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 329 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~-~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
...+++|+.|++++| .++.. +.. .+ ++|+.|++++|. ++..... + . .+++|+.|++++|.
T Consensus 424 ~~~l~~L~~L~l~~n-~l~~~----~~~--------~l~~~L~~L~L~~N~-l~~ip~~-~-~-~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 424 CAWAESILVLNLSSN-MLTGS----VFR--------CLPPKVKVLDLHNNR-IMSIPKD-V-T-HLQALQELNVASNQ 484 (562)
T ss_dssp CCCCTTCCEEECCSS-CCCGG----GGS--------SCCTTCSEEECCSSC-CCCCCTT-T-T-SSCCCSEEECCSSC
T ss_pred hcCcccCCEEECCCC-CCCcc----hhh--------hhcCcCCEEECCCCc-CcccChh-h-c-CCCCCCEEECCCCC
Confidence 224567777777777 45421 111 23 577788887776 5521111 1 1 36778888888776
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=2.6e-19 Score=189.78 Aligned_cols=94 Identities=19% Similarity=0.079 Sum_probs=45.4
Q ss_pred chhHHHHHHhhhhccceeeccccchhhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHHHHcCCCccE
Q 011710 9 RHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTH 88 (479)
Q Consensus 9 ~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~ 88 (479)
..++..++. +|+++++|++++........- ....+++|++|+|+.+.............+++|++
T Consensus 13 ~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~--------------~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~ 77 (844)
T 3j0a_A 13 FCNLTQVPQ-VLNTTERLLLSFNYIRTVTAS--------------SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI 77 (844)
T ss_dssp CCCSSCCCS-SCTTCCEEEEESCCCCEECSS--------------SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCE
T ss_pred CCCCCCCCC-CCCCcCEEECCCCcCCccChh--------------HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCE
Confidence 334445555 777999999985432111000 02335666666666542221111111135666666
Q ss_pred EeccCCCCCCCccccccchHHHHhhhcCCCccEEeccc
Q 011710 89 LDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIR 126 (479)
Q Consensus 89 L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 126 (479)
|+|++|. ++......+..+++|++|+++.
T Consensus 78 L~Ls~N~---------l~~~~p~~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 78 LDLGSSK---------IYFLHPDAFQGLFHLFELRLYF 106 (844)
T ss_dssp EECTTCC---------CCEECTTSSCSCSSCCCEECTT
T ss_pred EECCCCc---------CcccCHhHccCCcccCEeeCcC
Confidence 6666653 2222222344555666666643
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=4.7e-17 Score=154.85 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=44.0
Q ss_pred cCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 331 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 331 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.++.++.+.+.++ .+++.++..+...+. .+++|+.|++++|. ++......+. .+++|+.|++++|+
T Consensus 247 ~~~~l~~l~L~~~-~l~~~~l~~l~~~l~-----~l~~L~~L~Ls~N~-l~~i~~~~~~--~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 247 TNSLIKKFTFRNV-KITDESLFQVMKLLN-----QISGLLELEFSRNQ-LKSVPDGIFD--RLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCCEEEEESC-BCCHHHHHHHHHHHH-----TCTTCCEEECCSSC-CCCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ccchhhccccccc-cccCcchhhhHHHHh-----cccCCCEEECCCCC-CCccCHHHHh--cCCCCCEEEeeCCC
Confidence 4567777888777 677776666554433 57888888888887 6532222222 37888888888876
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=4e-18 Score=178.22 Aligned_cols=298 Identities=14% Similarity=0.145 Sum_probs=191.0
Q ss_pred CCCCCCcEEEeecCc-cCh-hHHHHHH------HcCCCccEEeccCCCCCCCccccccchHHHH---hhhcCCCccEEec
Q 011710 56 SILPGIQKLCLSVDY-ITD-AMVGTIS------QGLVSLTHLDLRDAPLIEPRITFDLTNSGLQ---QINQHGKLKHLSL 124 (479)
Q Consensus 56 ~~~~~L~~L~L~~~~-~~~-~~~~~l~------~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~---~l~~~~~L~~L~l 124 (479)
..+++|++|+|+.+. +.. .....+. ..+++|++|++++|. ++ .++ .+..+++|+.|++
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~---------L~--~ip~~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN---------LE--EFPASASLQKMVKLGLLDC 580 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC---------CC--BCCCHHHHTTCTTCCEEEC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc---------CC--ccCChhhhhcCCCCCEEEC
Confidence 348899999999987 776 4444333 145699999999985 33 232 4778999999999
Q ss_pred ccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCC-CceEEecCCCCCCHHHHHHHHhcC-
Q 011710 125 IRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSN-LYKLRVSHGTQLTDLVFHDISATS- 202 (479)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~- 202 (479)
+++. +..++ ....+++|+.|+++++ .+.. +...+..+++ |+.|++++|.. .. +.......
T Consensus 581 s~N~------l~~lp------~~~~L~~L~~L~Ls~N-~l~~--lp~~l~~l~~~L~~L~Ls~N~L-~~--lp~~~~~~~ 642 (876)
T 4ecn_A 581 VHNK------VRHLE------AFGTNVKLTDLKLDYN-QIEE--IPEDFCAFTDQVEGLGFSHNKL-KY--IPNIFNAKS 642 (876)
T ss_dssp TTSC------CCBCC------CCCTTSEESEEECCSS-CCSC--CCTTSCEECTTCCEEECCSSCC-CS--CCSCCCTTC
T ss_pred CCCC------cccch------hhcCCCcceEEECcCC-cccc--chHHHhhccccCCEEECcCCCC-Cc--Cchhhhccc
Confidence 7631 22222 1245789999999994 5652 2222356778 99999998863 32 11122222
Q ss_pred -CCccEEEccCCCCCCHHHH---HHhh--cCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHh-
Q 011710 203 -LSLTHVCLRWCNLLTNHAI---KSLA--SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRL- 275 (479)
Q Consensus 203 -~~L~~L~l~~~~~~~~~~~---~~l~--~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~- 275 (479)
++|+.|+++++ .+..... ..+. .+++|+.|++++| .+.......+..+++|+.|++++|.++......+..
T Consensus 643 ~~~L~~L~Ls~N-~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~ 720 (876)
T 4ecn_A 643 VYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720 (876)
T ss_dssp SSCEEEEECCSS-CTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred cCCCCEEECcCC-cCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc
Confidence 35999999995 4432110 0111 3458999999985 566544445568899999999999877322111110
Q ss_pred ----hcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCC-----CC
Q 011710 276 ----TVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP-----LI 346 (479)
Q Consensus 276 ----~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~-----~l 346 (479)
..+++|+.|++++|. ++. +........+++|+.|+|+++ .++. +..-...+++|+.|++++|+ .+
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~-L~~--lp~~l~~~~l~~L~~L~Ls~N-~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNK-LTS--LSDDFRATTLPYLSNMDVSYN-CFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp TSCCTTGGGCCEEECCSSC-CCC--CCGGGSTTTCTTCCEEECCSS-CCSS--CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred cccccccCCccEEECCCCC-Ccc--chHHhhhccCCCcCEEEeCCC-CCCc--cchhhhcCCCCCEEECCCCCCcccccc
Confidence 012389999999964 541 111111013489999999995 6653 21112368999999998743 22
Q ss_pred CHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 347 GDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 347 ~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.......+. .+++|+.|+|++|. ++ .+....+++|+.|++++|+
T Consensus 795 ~~~ip~~l~---------~L~~L~~L~Ls~N~-L~-----~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 795 LRQWPTGIT---------TCPSLIQLQIGSND-IR-----KVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp CCCCCTTGG---------GCSSCCEEECCSSC-CC-----BCCSCCCSSSCEEECCSCT
T ss_pred cccChHHHh---------cCCCCCEEECCCCC-CC-----ccCHhhcCCCCEEECCCCC
Confidence 211111222 58999999999998 53 2333246899999999997
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=6.9e-19 Score=186.53 Aligned_cols=142 Identities=18% Similarity=0.126 Sum_probs=88.7
Q ss_pred CCccCCCCCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccc
Q 011710 50 PNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQE 129 (479)
Q Consensus 50 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~ 129 (479)
|..++. ..+++++|+|+++.+.......+ ..+++|++|++++|... .......+..+++|++|+++++
T Consensus 16 L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~-~~l~~L~~LdLs~n~~~--------~~i~~~~f~~L~~L~~L~Ls~N-- 83 (844)
T 3j0a_A 16 LTQVPQ-VLNTTERLLLSFNYIRTVTASSF-PFLEQLQLLELGSQYTP--------LTIDKEAFRNLPNLRILDLGSS-- 83 (844)
T ss_dssp SSCCCS-SCTTCCEEEEESCCCCEECSSSC-SSCCSCSEEEECTTCCC--------CEECTTTTSSCTTCCEEECTTC--
T ss_pred CCCCCC-CCCCcCEEECCCCcCCccChhHC-cccccCeEEeCCCCCCc--------cccCHHHhcCCCCCCEEECCCC--
Confidence 333434 56799999999988876433333 48999999999998432 1111335678999999999763
Q ss_pred cccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHH-HHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEE
Q 011710 130 FLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFK-TILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHV 208 (479)
Q Consensus 130 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 208 (479)
.+..+....+ ..+++|+.|++++| .+....+. ..+..+++|++|++++|.... .........+++|+.|
T Consensus 84 ----~l~~~~p~~~----~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 84 ----KIYFLHPDAF----QGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRS-LYLHPSFGKLNSLKSI 153 (844)
T ss_dssp ----CCCEECTTSS----CSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCC-CCCCGGGGTCSSCCEE
T ss_pred ----cCcccCHhHc----cCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccc-cccchhHhhCCCCCEE
Confidence 1222222222 45778888888884 55432111 112467788888888765322 1111234567788888
Q ss_pred EccCC
Q 011710 209 CLRWC 213 (479)
Q Consensus 209 ~l~~~ 213 (479)
+++++
T Consensus 154 ~Ls~N 158 (844)
T 3j0a_A 154 DFSSN 158 (844)
T ss_dssp EEESS
T ss_pred ECCCC
Confidence 88774
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=152.75 Aligned_cols=174 Identities=13% Similarity=0.152 Sum_probs=120.2
Q ss_pred CccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHH-HHHHHhhcCCCcc
Q 011710 204 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVG-VSYLRLTVITSLV 282 (479)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~-l~~l~~~~~~~L~ 282 (479)
+|+.|+++++. +.... ....+++|++|++++| .+.......+..+++|+.|++++|.++... ++.... .+++|+
T Consensus 303 ~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~ 377 (520)
T 2z7x_B 303 NIKNFTVSGTR-MVHML--CPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT-QMKSLQ 377 (520)
T ss_dssp CCSEEEEESSC-CCCCC--CCSSCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCC
T ss_pred ceeEEEcCCCc-ccccc--chhhCCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCCccCccccchHHHh-hCCCCC
Confidence 57777777643 22211 0147899999999995 676655667789999999999999998632 222233 599999
Q ss_pred EEecCCCCCCCH-HHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcC-CCCcEEecCCCCCCCHHHHHHHHhcccc
Q 011710 283 KLSLRGCKRLTD-KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR-VPISELRVRQCPLIGDTSVIALASMLVD 360 (479)
Q Consensus 283 ~L~l~~~~~l~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 360 (479)
.|+++++. ++. .... .+. .+++|++|++++| .++..... .+ ++|+.|++++| .++. +.. .+.
T Consensus 378 ~L~Ls~N~-l~~~l~~~-~~~--~l~~L~~L~Ls~N-~l~~~~~~----~l~~~L~~L~Ls~N-~l~~--ip~---~~~- 441 (520)
T 2z7x_B 378 QLDISQNS-VSYDEKKG-DCS--WTKSLLSLNMSSN-ILTDTIFR----CLPPRIKVLDLHSN-KIKS--IPK---QVV- 441 (520)
T ss_dssp EEECCSSC-CBCCGGGC-SCC--CCTTCCEEECCSS-CCCGGGGG----SCCTTCCEEECCSS-CCCC--CCG---GGG-
T ss_pred EEECCCCc-CCcccccc-hhc--cCccCCEEECcCC-CCCcchhh----hhcccCCEEECCCC-cccc--cch---hhh-
Confidence 99999965 432 1111 111 2389999999995 66643322 33 69999999999 6662 222 112
Q ss_pred CCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 361 DDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 361 ~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+++|+.|++++|. ++......+. .+++|+.|++++|+
T Consensus 442 ----~l~~L~~L~L~~N~-l~~l~~~~~~--~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 442 ----KLEALQELNVASNQ-LKSVPDGIFD--RLTSLQKIWLHTNP 479 (520)
T ss_dssp ----GCTTCCEEECCSSC-CCCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ----cCCCCCEEECCCCc-CCccCHHHhc--cCCcccEEECcCCC
Confidence 58999999999998 7643322243 48999999999987
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=6.3e-17 Score=158.85 Aligned_cols=257 Identities=18% Similarity=0.172 Sum_probs=176.3
Q ss_pred CCCCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccccccccccc
Q 011710 55 PSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITY 134 (479)
Q Consensus 55 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 134 (479)
...+++|++|+++.+.+.... ...+++|++|++++|. ++. ++ +..+++|++|+++.+ .
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~---------l~~--l~-~~~l~~L~~L~l~~N------~ 138 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNK---------LTK--LD-VSQNPLLTYLNCARN------T 138 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSC---------CSC--CC-CTTCTTCCEEECTTS------C
T ss_pred cccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCc---------CCe--ec-CCCCCcCCEEECCCC------c
Confidence 445899999999988887642 3478999999999985 332 22 678899999999752 1
Q ss_pred ccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCC
Q 011710 135 FRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN 214 (479)
Q Consensus 135 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 214 (479)
+..+. ...+++|+.|+++++..++... ...+++|+.|+++++.. +... ...+++|+.|+++++
T Consensus 139 l~~l~-------l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~l-~~l~----l~~l~~L~~L~l~~N- 201 (457)
T 3bz5_A 139 LTEID-------VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNKI-TELD----VSQNKLLNRLNCDTN- 201 (457)
T ss_dssp CSCCC-------CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSCC-CCCC----CTTCTTCCEEECCSS-
T ss_pred cceec-------cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCCcc-ceec----cccCCCCCEEECcCC-
Confidence 22221 2468899999999975555432 25689999999998763 3322 456789999999995
Q ss_pred CCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEec--------
Q 011710 215 LLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSL-------- 286 (479)
Q Consensus 215 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l-------- 286 (479)
.++.. .+..+++|+.|++++| .++... +..+++|+.|++++|.++...+. .+++|+.|.+
T Consensus 202 ~l~~~---~l~~l~~L~~L~Ls~N-~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~-----~l~~L~~L~l~~n~L~~L 269 (457)
T 3bz5_A 202 NITKL---DLNQNIQLTFLDCSSN-KLTEID---VTPLTQLTYFDCSVNPLTELDVS-----TLSKLTTLHCIQTDLLEI 269 (457)
T ss_dssp CCSCC---CCTTCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCCCT-----TCTTCCEEECTTCCCSCC
T ss_pred cCCee---ccccCCCCCEEECcCC-cccccC---ccccCCCCEEEeeCCcCCCcCHH-----HCCCCCEEeccCCCCCEE
Confidence 55443 3678999999999985 565532 77899999999999988764322 3566665554
Q ss_pred --CCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHH-----HHHH-HhcCCCCcEEecCCCCCCCHHHHHHHHhcc
Q 011710 287 --RGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNG-----ILTL-ATCRVPISELRVRQCPLIGDTSVIALASML 358 (479)
Q Consensus 287 --~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~-----~~~l-~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 358 (479)
++|....... ...+++|+.|++++|..+.... +..+ ...+++|+.|++++| .++.. .+.
T Consensus 270 ~l~~n~~~~~~~------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l---~l~--- 336 (457)
T 3bz5_A 270 DLTHNTQLIYFQ------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTEL---DVS--- 336 (457)
T ss_dssp CCTTCTTCCEEE------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCC---CCT---
T ss_pred ECCCCccCCccc------ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-ccccc---ccc---
Confidence 4433222111 1123889999999875332110 0000 225688999999998 66552 122
Q ss_pred ccCCCcCCCCceEEEccCCCCCCH
Q 011710 359 VDDDRWYGSSIRLLDLYNCGGITQ 382 (479)
Q Consensus 359 ~~~~~~~~~~L~~L~l~~c~~i~~ 382 (479)
.+++|+.|++++|. +++
T Consensus 337 ------~l~~L~~L~l~~N~-l~~ 353 (457)
T 3bz5_A 337 ------HNTKLKSLSCVNAH-IQD 353 (457)
T ss_dssp ------TCTTCSEEECCSSC-CCB
T ss_pred ------cCCcCcEEECCCCC-CCC
Confidence 68999999999998 654
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.61 E-value=1.2e-16 Score=150.55 Aligned_cols=249 Identities=16% Similarity=0.142 Sum_probs=118.2
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
.+++++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++ .+..
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n------~l~~ 114 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNK---------ISKISPGAFAPLVKLERLYLSKN------QLKE 114 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSS------CCSB
T ss_pred CCCCeEEECCCCcCCEeChhhh-ccCCCCCEEECCCCc---------CCeeCHHHhcCCCCCCEEECCCC------cCCc
Confidence 4566677776655554322222 356667777776653 22222233455666666666542 1122
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+.. ...++|+.|+++++ .+..... ..+..+++|+.|+++++..............+++|+.|+++++ .++
T Consensus 115 l~~-------~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~ 184 (330)
T 1xku_A 115 LPE-------KMPKTLQELRVHEN-EITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NIT 184 (330)
T ss_dssp CCS-------SCCTTCCEEECCSS-CCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCC
T ss_pred cCh-------hhcccccEEECCCC-cccccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccc
Confidence 211 11256666666663 4443322 2234566666666665542111011112334556666666663 332
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011710 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 297 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~ 297 (479)
..+. ...++|+.|++++| .+.......+..+++|+.|++++|.++......+.. +++|+.|+++++. ++..
T Consensus 185 ~l~~---~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~l-- 255 (330)
T 1xku_A 185 TIPQ---GLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--TPHLRELHLNNNK-LVKV-- 255 (330)
T ss_dssp SCCS---SCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--STTCCEEECCSSC-CSSC--
T ss_pred cCCc---cccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC--CCCCCEEECCCCc-CccC--
Confidence 2110 11256666666663 454444445556666666666666555433323333 5666666666643 3210
Q ss_pred HHHhccCCCCCccEEecCCCCCCCHHHHHHHH-----hcCCCCcEEecCCCC
Q 011710 298 SALFDGTSKLQLQELDLSNLPHLSDNGILTLA-----TCRVPISELRVRQCP 344 (479)
Q Consensus 298 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-----~~~~~L~~L~l~~~~ 344 (479)
.... ..+++|++|+++++ .++..+...+. ...+.|+.|++.+|+
T Consensus 256 p~~l--~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 256 PGGL--ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CTTT--TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred Chhh--ccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 0000 12256666666663 44322211111 012456666666663
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.61 E-value=7.6e-18 Score=158.90 Aligned_cols=183 Identities=14% Similarity=0.039 Sum_probs=87.5
Q ss_pred cCCCccEEEccCCCCCCHHH--HHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcC
Q 011710 201 TSLSLTHVCLRWCNLLTNHA--IKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVI 278 (479)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~ 278 (479)
.+++|+.|+++++ .++..+ ...+..+ +|+.|+++++ .++.... .-.++|+.|++++|.++......+.. +
T Consensus 145 ~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~---~~~~~L~~L~l~~n~i~~~~~~~l~~--l 216 (332)
T 2ft3_A 145 GLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPK---DLPETLNELHLDHNKIQAIELEDLLR--Y 216 (332)
T ss_dssp SCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCS---SSCSSCSCCBCCSSCCCCCCTTSSTT--C
T ss_pred CCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCC-CCCccCc---cccCCCCEEECCCCcCCccCHHHhcC--C
Confidence 4455566665553 332111 1112233 5666666653 2322111 01246666666666555433333333 5
Q ss_pred CCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhcc
Q 011710 279 TSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASML 358 (479)
Q Consensus 279 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 358 (479)
++|+.|+++++. ++......+ . .+++|++|+++++ .++.. ..-...+++|+.|++++| .++..+...+....
T Consensus 217 ~~L~~L~L~~N~-l~~~~~~~~-~--~l~~L~~L~L~~N-~l~~l--p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~ 288 (332)
T 2ft3_A 217 SKLYRLGLGHNQ-IRMIENGSL-S--FLPTLRELHLDNN-KLSRV--PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVG 288 (332)
T ss_dssp TTCSCCBCCSSC-CCCCCTTGG-G--GCTTCCEEECCSS-CCCBC--CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSS
T ss_pred CCCCEEECCCCc-CCcCChhHh-h--CCCCCCEEECCCC-cCeec--ChhhhcCccCCEEECCCC-CCCccChhHccccc
Confidence 666666666642 321111011 1 1267777777763 44411 111235778888888877 55543333322210
Q ss_pred ccCCCcCCCCceEEEccCCCCCCHHH--HHHhhccCCCCccEEEecCCC
Q 011710 359 VDDDRWYGSSIRLLDLYNCGGITQLA--FRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 359 ~~~~~~~~~~L~~L~l~~c~~i~~~~--~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.. ...++|+.|++++|+ +.... ...+. .+++|+.+++++|.
T Consensus 289 ~~---~~~~~l~~L~l~~N~-~~~~~~~~~~~~--~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 FG---VKRAYYNGISLFNNP-VPYWEVQPATFR--CVTDRLAIQFGNYK 331 (332)
T ss_dssp CC---SSSCCBSEEECCSSS-SCGGGSCGGGGT--TBCCSTTEEC----
T ss_pred cc---cccccccceEeecCc-ccccccCccccc--ccchhhhhhccccc
Confidence 00 024678888888887 54221 22232 47888888888764
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=1.2e-16 Score=152.01 Aligned_cols=213 Identities=15% Similarity=0.128 Sum_probs=127.9
Q ss_pred cCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCC
Q 011710 149 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 228 (479)
Q Consensus 149 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 228 (479)
.+++|+.|++++ +.++... ...+..+++|++|+++++.. ...........+++|+.|+++++..++......+..++
T Consensus 98 ~l~~L~~L~Ls~-n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 174 (353)
T 2z80_A 98 SLGSLEHLDLSY-NYLSNLS-SSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174 (353)
T ss_dssp TCTTCCEEECCS-SCCSSCC-HHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred CCCCCCEEECCC-CcCCcCC-HhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence 355666666665 2444321 12224566666666665532 11110012335667777777775444443333456778
Q ss_pred CCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCC
Q 011710 229 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 308 (479)
Q Consensus 229 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 308 (479)
+|+.|++++| .+.......+..+++|+.|++++|.++......+. .+++|+.|+++++. ++......+......+.
T Consensus 175 ~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 175 FLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD--VTSSVECLELRDTD-LDTFHFSELSTGETNSL 250 (353)
T ss_dssp EEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH--HTTTEEEEEEESCB-CTTCCCC------CCCC
T ss_pred CCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhhhhh--hcccccEEECCCCc-cccccccccccccccch
Confidence 8888888875 56555556677888888888888887654433333 37889999888853 43221111111112367
Q ss_pred ccEEecCCCCCCCHHHHHHH---HhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCC
Q 011710 309 LQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG 379 (479)
Q Consensus 309 L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 379 (479)
++.+++++ ..+++..+..+ ...+++|+.|++++| .++.... .+.. .+++|++|++++|+.
T Consensus 251 l~~l~L~~-~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~-~~~~--------~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 251 IKKFTFRN-VKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD-GIFD--------RLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCEEEEES-CBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT-TTTT--------TCTTCCEEECCSSCB
T ss_pred hhcccccc-ccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH-HHHh--------cCCCCCEEEeeCCCc
Confidence 88999988 47777655433 346899999999999 6662111 1112 588999999999983
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.60 E-value=9.9e-18 Score=172.59 Aligned_cols=111 Identities=19% Similarity=0.163 Sum_probs=59.7
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhc
Q 011710 278 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASM 357 (479)
Q Consensus 278 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 357 (479)
+++|+.|+++++...... ....+ ..+++|++|+|++| .++...... ...+++|+.|+|++| .++......+.
T Consensus 468 ~~~L~~L~Ls~N~~~~~~-~~~~~--~~l~~L~~L~Ls~N-~L~~l~~~~-f~~l~~L~~L~Ls~N-~l~~l~~~~~~-- 539 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENF-LPDIF--TELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMSHN-NFFSLDTFPYK-- 539 (635)
T ss_dssp CTTCCEEECTTCEEGGGE-ECSCC--TTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCBCCCGGGT--
T ss_pred chhhhhhhhhhccccccc-Cchhh--hhccccCEEECCCC-ccCCcChHH-HcCCCCCCEEECCCC-cCCCCChhHHh--
Confidence 566777777664322110 00011 12267888888874 554321111 225778888888877 54432111111
Q ss_pred cccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 358 LVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 358 ~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+++|+.|++++|. ++......+.. ..++|+.|++++|+
T Consensus 540 -------~l~~L~~L~Ls~N~-l~~~~~~~l~~-l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 540 -------CLNSLQVLDYSLNH-IMTSKKQELQH-FPSSLAFLNLTQND 578 (635)
T ss_dssp -------TCTTCCEEECTTSC-CCBCCSSCTTC-CCTTCCEEECTTCC
T ss_pred -------CCCCCCEEECCCCc-CCCCCHHHHHh-hhCcCCEEEeeCCC
Confidence 46778888888877 55433333332 12578888887765
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.55 E-value=6.3e-17 Score=152.60 Aligned_cols=199 Identities=15% Similarity=0.118 Sum_probs=84.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
.+++++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++ .+..
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n------~l~~ 116 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNK---------ISKIHEKAFSPLRKLQKLYISKN------HLVE 116 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC---------CCEECGGGSTTCTTCCEEECCSS------CCCS
T ss_pred CCCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCc---------cCccCHhHhhCcCCCCEEECCCC------cCCc
Confidence 4456666666555443221122 245566666666553 22222233445555666665431 1111
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+... ..++|+.|+++++ .+.... ...+..+++|+.|+++++..............+ +|+.|+++++ .++
T Consensus 117 l~~~-------~~~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~ 185 (332)
T 2ft3_A 117 IPPN-------LPSSLVELRIHDN-RIRKVP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLT 185 (332)
T ss_dssp CCSS-------CCTTCCEEECCSS-CCCCCC-SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCS
T ss_pred cCcc-------ccccCCEEECCCC-ccCccC-HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCC
Confidence 1111 1245566666552 333221 111234555666665554321000000011122 5555555553 222
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011710 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
..+. ...++|+.|+++++ .+.......+..+++|+.|++++|.++......+.. +++|+.|+++++
T Consensus 186 ~l~~---~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N 251 (332)
T 2ft3_A 186 GIPK---DLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--LPTLRELHLDNN 251 (332)
T ss_dssp SCCS---SSCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--CTTCCEEECCSS
T ss_pred ccCc---cccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--CCCCCEEECCCC
Confidence 2110 01245555555553 344333344455555666666655554332222322 555666666553
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.55 E-value=4.9e-16 Score=145.40 Aligned_cols=260 Identities=15% Similarity=0.146 Sum_probs=135.7
Q ss_pred CcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccch
Q 011710 61 IQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVND 140 (479)
Q Consensus 61 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 140 (479)
++.++++.+.+. ..+..+...+++|++|++++|. ++......+..+++|++|+++++. +..+..
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~ 75 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNP---------LSQISAADLAPFTKLELLNLSSNV------LYETLD 75 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSC---------CCCCCHHHHTTCTTCCEEECTTSC------CEEEEE
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCc---------cCcCCHHHhhCCCcCCEEECCCCc------CCcchh
Confidence 344444444442 2344455566788888888774 333233455667777777776421 111111
Q ss_pred HHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHH
Q 011710 141 LGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHA 220 (479)
Q Consensus 141 ~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 220 (479)
...+++|+.|+++++ .++.. ...++|++|+++++. ++...
T Consensus 76 ------~~~l~~L~~L~Ls~n-~l~~l------~~~~~L~~L~l~~n~---------------------------l~~~~ 115 (317)
T 3o53_A 76 ------LESLSTLRTLDLNNN-YVQEL------LVGPSIETLHAANNN---------------------------ISRVS 115 (317)
T ss_dssp ------ETTCTTCCEEECCSS-EEEEE------EECTTCCEEECCSSC---------------------------CSEEE
T ss_pred ------hhhcCCCCEEECcCC-ccccc------cCCCCcCEEECCCCc---------------------------cCCcC
Confidence 134566777776663 33321 122445555544432 22111
Q ss_pred HHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHH
Q 011710 221 IKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISAL 300 (479)
Q Consensus 221 ~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l 300 (479)
...+++|+.|++++| .++......+..+++|+.|++++|.++......+.. .+++|++|+++++. ++..
T Consensus 116 ---~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~-l~~~----- 184 (317)
T 3o53_A 116 ---CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-SSDTLEHLNLQYNF-IYDV----- 184 (317)
T ss_dssp ---ECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG-GTTTCCEEECTTSC-CCEE-----
T ss_pred ---ccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh-ccCcCCEEECCCCc-Cccc-----
Confidence 113455666666653 444443334455666666666666665544444433 35666666666643 3211
Q ss_pred hccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCC
Q 011710 301 FDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGI 380 (479)
Q Consensus 301 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i 380 (479)
.....+++|++|+++++ .++..... ...+++|+.|++++| .++. +...+. .+++|+.|++++|+ +
T Consensus 185 ~~~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~-----l~~~~~-----~l~~L~~L~l~~N~-~ 249 (317)
T 3o53_A 185 KGQVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVL-----IEKALR-----FSQNLEHFDLRGNG-F 249 (317)
T ss_dssp ECCCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCE-----ECTTCC-----CCTTCCEEECTTCC-C
T ss_pred ccccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccc-----hhhHhh-----cCCCCCEEEccCCC-c
Confidence 11112367777777773 55422111 235678888888887 5552 111111 56788888888887 6
Q ss_pred C-HHHHHHhhccCCCCccEEEecCC
Q 011710 381 T-QLAFRWLKKPYFPRLRWLGVTGS 404 (479)
Q Consensus 381 ~-~~~~~~l~~~~~~~L~~L~l~~~ 404 (479)
+ ......+. .+++|+.+++.++
T Consensus 250 ~~~~~~~~~~--~~~~L~~l~l~~~ 272 (317)
T 3o53_A 250 HCGTLRDFFS--KNQRVQTVAKQTV 272 (317)
T ss_dssp BHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred cCcCHHHHHh--ccccceEEECCCc
Confidence 6 33334443 3777777776543
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.53 E-value=9.5e-16 Score=150.90 Aligned_cols=230 Identities=17% Similarity=0.195 Sum_probs=159.8
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccc
Q 011710 56 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 56 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 135 (479)
...+++++|+|+++.+.......+ ..+++|++|+|++|. ++......+..+++|++|+++++ .+
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~---------i~~~~~~~~~~l~~L~~L~L~~n------~l 135 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNS---------IRQIEVGAFNGLASLNTLELFDN------WL 135 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCSS------CC
T ss_pred CCCCCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCc---------cCCcChhhccCcccCCEEECCCC------cC
Confidence 345789999999888776433333 478999999999984 44333345677899999999762 23
Q ss_pred cccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 011710 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 215 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (479)
..+....+ ..+++|+.|++++ +.+..... ..+..+++|+.|+++++..+...... ....+++|+.|+++++ .
T Consensus 136 ~~~~~~~~----~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~ 207 (452)
T 3zyi_A 136 TVIPSGAF----EYLSKLRELWLRN-NPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMC-N 207 (452)
T ss_dssp SBCCTTTS----SSCTTCCEEECCS-CCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTS-C
T ss_pred CccChhhh----cccCCCCEEECCC-CCcceeCH-hHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCC-c
Confidence 33332222 4578999999998 46654322 22357899999999987655433221 2346789999999995 4
Q ss_pred CCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHH
Q 011710 216 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~ 295 (479)
+... ..+..+++|+.|++++| .+.......+..+++|+.|++++|.++......+.. +++|+.|+++++ .++..
T Consensus 208 l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N-~l~~~ 281 (452)
T 3zyi_A 208 IKDM--PNLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG--LASLVELNLAHN-NLSSL 281 (452)
T ss_dssp CSSC--CCCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSS-CCSCC
T ss_pred cccc--ccccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcCceECHHHhcC--CCCCCEEECCCC-cCCcc
Confidence 5433 24668899999999985 677666677889999999999999887655444444 899999999986 34421
Q ss_pred HHHHHhccCCCCCccEEecCCCC
Q 011710 296 CISALFDGTSKLQLQELDLSNLP 318 (479)
Q Consensus 296 ~~~~l~~~~~~~~L~~L~l~~~~ 318 (479)
....+ . .+++|++|+|++++
T Consensus 282 ~~~~~-~--~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 282 PHDLF-T--PLRYLVELHLHHNP 301 (452)
T ss_dssp CTTSS-T--TCTTCCEEECCSSC
T ss_pred ChHHh-c--cccCCCEEEccCCC
Confidence 11111 1 23899999999854
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.53 E-value=8.4e-16 Score=150.71 Aligned_cols=230 Identities=17% Similarity=0.164 Sum_probs=158.7
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccc
Q 011710 56 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 56 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 135 (479)
...++++.|+|+.+.+.......+ ..+++|++|+|++|. ++......+..+++|++|+++++ .+
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~---------i~~i~~~~~~~l~~L~~L~L~~n------~l 124 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNH---------IRTIEIGAFNGLANLNTLELFDN------RL 124 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSSC---------CCEECGGGGTTCSSCCEEECCSS------CC
T ss_pred CCCCCCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCCc---------CCccChhhccCCccCCEEECCCC------cC
Confidence 345789999999887776443333 478999999999984 44333446678899999999752 23
Q ss_pred cccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 011710 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 215 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (479)
..+....+ ..+++|+.|++++ +.+..... ..+..+++|+.|+++++..+...... ....+++|+.|+++++ .
T Consensus 125 ~~~~~~~~----~~l~~L~~L~L~~-N~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~ 196 (440)
T 3zyj_A 125 TTIPNGAF----VYLSKLKELWLRN-NPIESIPS-YAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC-N 196 (440)
T ss_dssp SSCCTTTS----CSCSSCCEEECCS-CCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTS-C
T ss_pred CeeCHhHh----hccccCceeeCCC-CcccccCH-HHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCC-c
Confidence 33332222 4578899999998 45654322 22356889999999886654432221 2346789999999985 4
Q ss_pred CCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHH
Q 011710 216 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~ 295 (479)
++.. ..+..+++|+.|++++| .+.......+..+++|+.|++++|.++......+.. +++|+.|+++++ .++..
T Consensus 197 l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N-~l~~~ 270 (440)
T 3zyj_A 197 LREI--PNLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN--LQSLVEINLAHN-NLTLL 270 (440)
T ss_dssp CSSC--CCCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT--CTTCCEEECTTS-CCCCC
T ss_pred Cccc--cccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhcC--CCCCCEEECCCC-CCCcc
Confidence 5432 24668899999999985 677666677889999999999999887655544444 899999999985 34422
Q ss_pred HHHHHhccCCCCCccEEecCCCC
Q 011710 296 CISALFDGTSKLQLQELDLSNLP 318 (479)
Q Consensus 296 ~~~~l~~~~~~~~L~~L~l~~~~ 318 (479)
....+ . .+++|+.|+|++++
T Consensus 271 ~~~~~-~--~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 271 PHDLF-T--PLHHLERIHLHHNP 290 (440)
T ss_dssp CTTTT-S--SCTTCCEEECCSSC
T ss_pred ChhHh-c--cccCCCEEEcCCCC
Confidence 11111 1 23899999999854
No 59
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.52 E-value=2.9e-13 Score=128.75 Aligned_cols=192 Identities=23% Similarity=0.252 Sum_probs=103.3
Q ss_pred CCccEEEccCCCCCCHHHHHHhh-----cCCCCCEEecCCCCCCChHHHHhhh-cCCCCcEEEccCCCCchHHHHHHHh-
Q 011710 203 LSLTHVCLRWCNLLTNHAIKSLA-----SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRL- 275 (479)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~l~~~~l~~l~~- 275 (479)
++|+.|++++| .++..+...++ .+++|+.|++++| .+++.+...+. .+++|+.|+|++|.+++.+...+..
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 35555555553 34444443333 1246666666664 45555544443 3456666666666666655555443
Q ss_pred --hcCCCccEEecCCCCCCCHHHHHHHhcc-CCCCCccEEecCCCCCCCHHHHHHHH---hcCCCCcEEecCCCCCCCHH
Q 011710 276 --TVITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILTLA---TCRVPISELRVRQCPLIGDT 349 (479)
Q Consensus 276 --~~~~~L~~L~l~~~~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~ 349 (479)
+..++|++|++++| .+++.+...++.. ...++|++|+|++ +.+++.++..+. ..+++|+.|++++| .+++.
T Consensus 150 L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 150 LLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp HHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred HHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 12456666666664 3555554444321 0125677777776 356666554443 23456777777777 66776
Q ss_pred HHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCC---ccEEE--ecCCC
Q 011710 350 SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPR---LRWLG--VTGSV 405 (479)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~---L~~L~--l~~~~ 405 (479)
+...++.++. .+++|++|+|++|. +++.+...+.....+. |+.+. +.++.
T Consensus 227 g~~~l~~~L~-----~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~ 281 (372)
T 3un9_A 227 AALALARAAR-----EHPSLELLHLYFNE-LSSEGRQVLRDLGGAAEGGARVVVSLTEGTA 281 (372)
T ss_dssp HHHHHHHHHH-----HCSSCCEEECTTSS-CCHHHHHHHHHCC------CEEECCCC----
T ss_pred HHHHHHHHHH-----hCCCCCEEeccCCC-CCHHHHHHHHHHhcCCCccchhhHhhhcCCc
Confidence 6666655443 35667777777776 7776666665422222 55555 44444
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.52 E-value=2.4e-15 Score=147.53 Aligned_cols=247 Identities=17% Similarity=0.134 Sum_probs=168.4
Q ss_pred CCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccc
Q 011710 60 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 139 (479)
Q Consensus 60 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 139 (479)
..+.++.....+.. ++. ...++++.|+|++|. ++......+..+++|++|+++++ .+..+.
T Consensus 44 ~~~~v~c~~~~l~~--iP~--~~~~~l~~L~L~~n~---------i~~~~~~~~~~l~~L~~L~Ls~n------~i~~i~ 104 (440)
T 3zyj_A 44 QFSKVICVRKNLRE--VPD--GISTNTRLLNLHENQ---------IQIIKVNSFKHLRHLEILQLSRN------HIRTIE 104 (440)
T ss_dssp TSCEEECCSCCCSS--CCS--CCCTTCSEEECCSCC---------CCEECTTTTSSCSSCCEEECCSS------CCCEEC
T ss_pred CCCEEEeCCCCcCc--CCC--CCCCCCcEEEccCCc---------CCeeCHHHhhCCCCCCEEECCCC------cCCccC
Confidence 45566666544432 111 134689999999985 44433456778999999999762 233333
Q ss_pred hHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHH
Q 011710 140 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH 219 (479)
Q Consensus 140 ~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 219 (479)
...+ ..+++|+.|+++++ .++.... ..+..+++|++|+++++.. ..... .....+++|+.|++++++.+...
T Consensus 105 ~~~~----~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~i-~~~~~-~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 105 IGAF----NGLANLNTLELFDN-RLTTIPN-GAFVYLSKLKELWLRNNPI-ESIPS-YAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp GGGG----TTCSSCCEEECCSS-CCSSCCT-TTSCSCSSCCEEECCSCCC-CEECT-TTTTTCTTCCEEECCCCTTCCEE
T ss_pred hhhc----cCCccCCEEECCCC-cCCeeCH-hHhhccccCceeeCCCCcc-cccCH-HHhhhCcccCEeCCCCCCCccee
Confidence 3322 45899999999994 6664322 2235689999999998763 22111 12446789999999998777655
Q ss_pred HHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHH
Q 011710 220 AIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISA 299 (479)
Q Consensus 220 ~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~ 299 (479)
....+..+++|+.|++++| .++.. ..+..+++|+.|++++|.++......+.. +++|+.|+++++. ++......
T Consensus 177 ~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~n~-l~~~~~~~ 250 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMC-NLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQG--LMHLQKLWMIQSQ-IQVIERNA 250 (440)
T ss_dssp CTTTTTTCSSCCEEECTTS-CCSSC--CCCTTCSSCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTCC-CCEECTTS
T ss_pred CcchhhcccccCeecCCCC-cCccc--cccCCCcccCEEECCCCccCccChhhhcc--CccCCEEECCCCc-eeEEChhh
Confidence 5555778999999999996 55432 35778999999999999888654444444 8999999999853 44322111
Q ss_pred HhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCC
Q 011710 300 LFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 344 (479)
Q Consensus 300 l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 344 (479)
+. .+++|++|+|+++ .++..... ....+++|+.|++++|+
T Consensus 251 ~~---~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 FD---NLQSLVEINLAHN-NLTLLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ST---TCTTCCEEECTTS-CCCCCCTT-TTSSCTTCCEEECCSSC
T ss_pred hc---CCCCCCEEECCCC-CCCccChh-HhccccCCCEEEcCCCC
Confidence 11 2389999999994 66533222 22368999999999986
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.52 E-value=3.5e-16 Score=146.40 Aligned_cols=237 Identities=13% Similarity=0.091 Sum_probs=157.4
Q ss_pred HHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHh
Q 011710 145 LMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSL 224 (479)
Q Consensus 145 ~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 224 (479)
.+...+++|+.|+++++ .+....... +..+++|+.|+++++....... ...+++|+.|+++++ .++ .+
T Consensus 28 ~~~~~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n-~l~-----~l 95 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNN-YVQ-----EL 95 (317)
T ss_dssp HHHTTGGGCSEEECTTS-CCCCCCHHH-HTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSS-EEE-----EE
T ss_pred HHhccCCCCCEEECcCC-ccCcCCHHH-hhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCC-ccc-----cc
Confidence 34455678888888884 665543333 3678888888888776422111 456789999999985 443 23
Q ss_pred hcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccC
Q 011710 225 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 304 (479)
Q Consensus 225 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 304 (479)
...++|+.|++++| .+..... ..+++|+.|++++|.++......+.. +++|+.|+++++. ++......+....
T Consensus 96 ~~~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~--l~~L~~L~Ls~N~-l~~~~~~~~~~~l 168 (317)
T 3o53_A 96 LVGPSIETLHAANN-NISRVSC---SRGQGKKNIYLANNKITMLRDLDEGC--RSRVQYLDLKLNE-IDTVNFAELAASS 168 (317)
T ss_dssp EECTTCCEEECCSS-CCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGG--GSSEEEEECTTSC-CCEEEGGGGGGGT
T ss_pred cCCCCcCEEECCCC-ccCCcCc---cccCCCCEEECCCCCCCCccchhhhc--cCCCCEEECCCCC-CCcccHHHHhhcc
Confidence 46699999999985 5554332 24789999999999888654433443 8999999999964 5533222232222
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHH
Q 011710 305 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 384 (479)
Q Consensus 305 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~ 384 (479)
++|++|+++++ .++.... . ..+++|+.|++++| .++..... .. .+++|+.|++++|. ++...
T Consensus 169 --~~L~~L~L~~N-~l~~~~~--~-~~l~~L~~L~Ls~N-~l~~l~~~--~~--------~l~~L~~L~L~~N~-l~~l~ 230 (317)
T 3o53_A 169 --DTLEHLNLQYN-FIYDVKG--Q-VVFAKLKTLDLSSN-KLAFMGPE--FQ--------SAAGVTWISLRNNK-LVLIE 230 (317)
T ss_dssp --TTCCEEECTTS-CCCEEEC--C-CCCTTCCEEECCSS-CCCEECGG--GG--------GGTTCSEEECTTSC-CCEEC
T ss_pred --CcCCEEECCCC-cCccccc--c-cccccCCEEECCCC-cCCcchhh--hc--------ccCcccEEECcCCc-ccchh
Confidence 89999999995 6653211 1 14789999999999 66632211 22 57899999999998 66321
Q ss_pred HHHhhccCCCCccEEEecCCCCH-HHHHHHHhcCCCce
Q 011710 385 FRWLKKPYFPRLRWLGVTGSVNR-DILDALARSRPFLN 421 (479)
Q Consensus 385 ~~~l~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~p~l~ 421 (479)
..+ ..+++|+.|++++|+.. .....+....|.++
T Consensus 231 -~~~--~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 231 -KAL--RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp -TTC--CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred -hHh--hcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 122 25899999999999843 44444444444443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.51 E-value=4.1e-15 Score=146.32 Aligned_cols=247 Identities=19% Similarity=0.144 Sum_probs=168.4
Q ss_pred CCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccc
Q 011710 60 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 139 (479)
Q Consensus 60 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 139 (479)
....++..+..+... +. ...++|++|+|++|. ++......+..+++|++|+++++ .+..+.
T Consensus 55 ~~~~v~c~~~~l~~i--P~--~~~~~l~~L~L~~n~---------i~~~~~~~~~~l~~L~~L~Ls~n------~i~~~~ 115 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEV--PQ--GIPSNTRYLNLMENN---------IQMIQADTFRHLHHLEVLQLGRN------SIRQIE 115 (452)
T ss_dssp SSCEEECCSSCCSSC--CS--CCCTTCSEEECCSSC---------CCEECTTTTTTCTTCCEEECCSS------CCCEEC
T ss_pred CCcEEEECCCCcCcc--CC--CCCCCccEEECcCCc---------CceECHHHcCCCCCCCEEECCCC------ccCCcC
Confidence 456676665544331 10 134689999999984 44433445778999999999762 233333
Q ss_pred hHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHH
Q 011710 140 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH 219 (479)
Q Consensus 140 ~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 219 (479)
...+ ..+++|+.|+|+++ .+.... ...+..+++|++|+++++.. .... ......+++|+.|++++|+.+...
T Consensus 116 ~~~~----~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~l-~~~~-~~~~~~l~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 116 VGAF----NGLASLNTLELFDN-WLTVIP-SGAFEYLSKLRELWLRNNPI-ESIP-SYAFNRVPSLMRLDLGELKKLEYI 187 (452)
T ss_dssp TTTT----TTCTTCCEEECCSS-CCSBCC-TTTSSSCTTCCEEECCSCCC-CEEC-TTTTTTCTTCCEEECCCCTTCCEE
T ss_pred hhhc----cCcccCCEEECCCC-cCCccC-hhhhcccCCCCEEECCCCCc-ceeC-HhHHhcCCcccEEeCCCCCCcccc
Confidence 2222 45899999999994 666432 22235689999999998763 2211 113446789999999998777665
Q ss_pred HHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHH
Q 011710 220 AIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISA 299 (479)
Q Consensus 220 ~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~ 299 (479)
....+..+++|+.|++++| .+... ..+..+++|+.|++++|.++......+.. +++|+.|+++++. ++......
T Consensus 188 ~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~n~-l~~~~~~~ 261 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMC-NIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHG--LSSLKKLWVMNSQ-VSLIERNA 261 (452)
T ss_dssp CTTTTTTCTTCCEEECTTS-CCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTT--CTTCCEEECTTSC-CCEECTTT
T ss_pred ChhhccCCCCCCEEECCCC-ccccc--ccccccccccEEECcCCcCcccCcccccC--ccCCCEEEeCCCc-CceECHHH
Confidence 5556778999999999996 55433 45778999999999999888655444544 8999999999864 44221111
Q ss_pred HhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCC
Q 011710 300 LFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 344 (479)
Q Consensus 300 l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 344 (479)
+ . .+++|++|+|+++ .++..... ....+++|+.|++++|+
T Consensus 262 ~-~--~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 F-D--GLASLVELNLAHN-NLSSLPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp T-T--TCTTCCEEECCSS-CCSCCCTT-SSTTCTTCCEEECCSSC
T ss_pred h-c--CCCCCCEEECCCC-cCCccChH-HhccccCCCEEEccCCC
Confidence 1 1 2389999999994 66532222 22358999999999986
No 63
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.50 E-value=3.5e-13 Score=128.17 Aligned_cols=178 Identities=20% Similarity=0.198 Sum_probs=144.2
Q ss_pred CCCCCEEecCCCCCCChHHHHhhh-----cCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHh
Q 011710 227 NTGIKVLDLRDCKNLGDEALRAIS-----SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALF 301 (479)
Q Consensus 227 ~~~L~~L~l~~~~~l~~~~~~~l~-----~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 301 (479)
.+.|+.|++++| .++......+. ..++|+.|+|++|.+++.++..+.. .+++|+.|++++| .+++.+...++
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP-VFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH-HHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH-HHHhccHhhcCCC-CCCHHHHHHHH
Confidence 578999999996 68887766655 2379999999999999999988887 6889999999996 68888777765
Q ss_pred cc--CCCCCccEEecCCCCCCCHHHHHHHH---hcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccC
Q 011710 302 DG--TSKLQLQELDLSNLPHLSDNGILTLA---TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 376 (479)
Q Consensus 302 ~~--~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 376 (479)
.. ...++|++|+|++| .+++.+...++ ..+++|++|++++| .+++.++..++.++. .+++|+.|++++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~-----~~~~L~~L~Ls~ 220 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLD-----RNRQLQELNVAY 220 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGG-----GCSCCCEEECCS
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHh-----cCCCcCeEECCC
Confidence 43 12378999999995 88887776654 45789999999999 799999888887665 578999999999
Q ss_pred CCCCCHHHHHHhhcc--CCCCccEEEecCCC-CHHHHHHHHh
Q 011710 377 CGGITQLAFRWLKKP--YFPRLRWLGVTGSV-NRDILDALAR 415 (479)
Q Consensus 377 c~~i~~~~~~~l~~~--~~~~L~~L~l~~~~-~~~~~~~~~~ 415 (479)
|. +++.+...+... .+++|+.|++++|. ....+..+..
T Consensus 221 N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 221 NG-AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp SC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 98 999887666541 37899999999998 5556666655
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.48 E-value=1.7e-14 Score=132.83 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=31.8
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIR 126 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 126 (479)
.++|++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|++++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNV---------LARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCS
T ss_pred CCCceEEEeeCCcCCccCHHHc-ccCCCCCEEECCCCc---------cceeCHhhcCCccCCCEEeCCC
Confidence 4567777777665554322222 356677777776653 2222222344566666666653
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.48 E-value=2e-16 Score=147.36 Aligned_cols=181 Identities=18% Similarity=0.175 Sum_probs=97.1
Q ss_pred CCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHH-HhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCC
Q 011710 202 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEAL-RAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 280 (479)
Q Consensus 202 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~ 280 (479)
+++|+.|+++++ .+...+ ..+..+++|++|+++++ .+..... ..+..+++|+.|++++|.+.......+. .+++
T Consensus 77 ~~~L~~L~Ls~n-~i~~l~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~ 151 (306)
T 2z66_A 77 TTSLKYLDLSFN-GVITMS-SNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN--GLSS 151 (306)
T ss_dssp CSCCCEEECCSC-SEEEEE-EEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT--TCTT
T ss_pred ccccCEEECCCC-ccccCh-hhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcc--cCcC
Confidence 445555555553 222110 01335666666666664 3332221 3455666777777777655533322222 2667
Q ss_pred ccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhcccc
Q 011710 281 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 360 (479)
Q Consensus 281 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 360 (479)
|++|+++++. ++.......+ ..+++|++|+++++ .++......+ ..+++|+.|++++| .++......+.
T Consensus 152 L~~L~l~~n~-l~~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~----- 220 (306)
T 2z66_A 152 LEVLKMAGNS-FQENFLPDIF--TELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHN-NFFSLDTFPYK----- 220 (306)
T ss_dssp CCEEECTTCE-EGGGEECSCC--TTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTS-CCSBCCSGGGT-----
T ss_pred CCEEECCCCc-cccccchhHH--hhCcCCCEEECCCC-CcCCcCHHHh-cCCCCCCEEECCCC-ccCccChhhcc-----
Confidence 7777776643 2211000111 12267888888774 5543221212 25788888888888 44432211121
Q ss_pred CCCcCCCCceEEEccCCCCCCHHHHHHhhccCC-CCccEEEecCCC
Q 011710 361 DDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYF-PRLRWLGVTGSV 405 (479)
Q Consensus 361 ~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~-~~L~~L~l~~~~ 405 (479)
.+++|+.|++++|. ++......+.. + ++|+.|++++|+
T Consensus 221 ----~l~~L~~L~L~~N~-l~~~~~~~~~~--~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 221 ----CLNSLQVLDYSLNH-IMTSKKQELQH--FPSSLAFLNLTQND 259 (306)
T ss_dssp ----TCTTCCEEECTTSC-CCBCSSSSCCC--CCTTCCEEECTTCC
T ss_pred ----CcccCCEeECCCCC-CcccCHHHHHh--hhccCCEEEccCCC
Confidence 57889999999887 65443333433 5 489999998876
No 66
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.48 E-value=2e-16 Score=147.62 Aligned_cols=108 Identities=13% Similarity=0.055 Sum_probs=64.3
Q ss_pred CCCcEEEeecCccCh--hHHHHHHHcCCCccEEeccC-CCCCCCccccccchHHHHhhhcCCCccEEecccccccccccc
Q 011710 59 PGIQKLCLSVDYITD--AMVGTISQGLVSLTHLDLRD-APLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 59 ~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 135 (479)
.++++|+|+++.+.. .....+ ..+++|++|++++ +. ++......+..+++|++|+++++ .+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~---------l~~~~p~~l~~l~~L~~L~Ls~n------~l 113 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINN---------LVGPIPPAIAKLTQLHYLYITHT------NV 113 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETT---------EESCCCGGGGGCTTCSEEEEEEE------CC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCc---------ccccCChhHhcCCCCCEEECcCC------ee
Confidence 689999999887765 333333 4789999999985 42 33323345677888888888642 11
Q ss_pred cccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCC
Q 011710 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT 188 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 188 (479)
....... ...+++|+.|+++++ .+....... +..+++|++|+++++.
T Consensus 114 ~~~~p~~----~~~l~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 114 SGAIPDF----LSQIKTLVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEECCGG----GGGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSC
T ss_pred CCcCCHH----HhCCCCCCEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCCc
Confidence 1111111 145777888888773 443221111 2456667777766654
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.47 E-value=4e-15 Score=137.05 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=79.5
Q ss_pred hcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccC
Q 011710 225 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 304 (479)
Q Consensus 225 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 304 (479)
..+++|++|+++++..++......+..+++|+.|++++|.++......+. .+++|++|+++++. ++......+ .
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~---~ 150 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR--GLAALQYLYLQDNA-LQALPDDTF---R 150 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCSSC-CCCCCTTTT---T
T ss_pred CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh--CCcCCCEEECCCCc-ccccCHhHh---c
Confidence 34455555555543223333333444555555555555544432222222 25555555555532 221100000 0
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHH
Q 011710 305 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 384 (479)
Q Consensus 305 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~ 384 (479)
.+++|++|+++++ .++...... ...+++|+.|++++| .++......+. .+++|+.|++++|. ++...
T Consensus 151 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~n~-l~~~~ 217 (285)
T 1ozn_A 151 DLGNLTHLFLHGN-RISSVPERA-FRGLHSLDRLLLHQN-RVAHVHPHAFR---------DLGRLMTLYLFANN-LSALP 217 (285)
T ss_dssp TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTTTTT---------TCTTCCEEECCSSC-CSCCC
T ss_pred cCCCccEEECCCC-cccccCHHH-hcCccccCEEECCCC-cccccCHhHcc---------CcccccEeeCCCCc-CCcCC
Confidence 1256666666663 444221111 124677777777777 44433222222 46778888888876 66544
Q ss_pred HHHhhccCCCCccEEEecCCC
Q 011710 385 FRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 385 ~~~l~~~~~~~L~~L~l~~~~ 405 (479)
...+.. +++|+.|++++|+
T Consensus 218 ~~~~~~--l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 218 TEALAP--LRALQYLRLNDNP 236 (285)
T ss_dssp HHHHTT--CTTCCEEECCSSC
T ss_pred HHHccc--CcccCEEeccCCC
Confidence 444543 7888888888776
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.46 E-value=1e-15 Score=142.51 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=53.0
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHH--HHhhhcCCCccEEecccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSG--LQQINQHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~--l~~l~~~~~L~~L~l~~~~~~~~~~~ 135 (479)
.++|++|+++++.+... .......+++|++|++++|. ++..+ ...+..+++|++|+++++. .
T Consensus 27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~---------l~~~~~~~~~~~~~~~L~~L~Ls~n~------i 90 (306)
T 2z66_A 27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNG---------LSFKGCCSQSDFGTTSLKYLDLSFNG------V 90 (306)
T ss_dssp CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC---------CCEEEEEEHHHHSCSCCCEEECCSCS------E
T ss_pred CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCc---------cCcccCcccccccccccCEEECCCCc------c
Confidence 45777787777666532 12222467777788877764 22111 1233456677777775421 1
Q ss_pred cccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCC
Q 011710 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 187 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 187 (479)
..+... ...+++|+.|+++++ .+...........+++|+.|+++++
T Consensus 91 ~~l~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 91 ITMSSN-----FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp EEEEEE-----EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS
T ss_pred ccChhh-----cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC
Confidence 111110 123566666666663 3332211111234455555555544
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.46 E-value=1.3e-13 Score=135.04 Aligned_cols=259 Identities=16% Similarity=0.139 Sum_probs=138.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
.++|++|+++.+.+..- ....++|++|++++|. ++. ++.+..+++|++|+++++ .+..
T Consensus 110 ~~~L~~L~l~~n~l~~l-----~~~~~~L~~L~L~~n~---------l~~--lp~~~~l~~L~~L~l~~N------~l~~ 167 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKAL-----SDLPPLLEYLGVSNNQ---------LEK--LPELQNSSFLKIIDVDNN------SLKK 167 (454)
T ss_dssp CTTCCEEECCSSCCSCC-----CSCCTTCCEEECCSSC---------CSS--CCCCTTCTTCCEEECCSS------CCSC
T ss_pred cCCCcEEECCCCccCcc-----cCCCCCCCEEECcCCC---------CCC--CcccCCCCCCCEEECCCC------cCcc
Confidence 46777777777665541 1122578888887774 222 334667888888888652 1222
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+. ...++|+.|+++++ .+... .. +..+++|+.|+++++.... +....++|+.|+++++ .+.
T Consensus 168 lp--------~~~~~L~~L~L~~n-~l~~l--~~-~~~l~~L~~L~l~~N~l~~------l~~~~~~L~~L~l~~n-~l~ 228 (454)
T 1jl5_A 168 LP--------DLPPSLEFIAAGNN-QLEEL--PE-LQNLPFLTAIYADNNSLKK------LPDLPLSLESIVAGNN-ILE 228 (454)
T ss_dssp CC--------CCCTTCCEEECCSS-CCSSC--CC-CTTCTTCCEEECCSSCCSS------CCCCCTTCCEEECCSS-CCS
T ss_pred cC--------CCcccccEEECcCC-cCCcC--cc-ccCCCCCCEEECCCCcCCc------CCCCcCcccEEECcCC-cCC
Confidence 21 12347888888874 45432 12 2567788888887765321 1122347888888875 444
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011710 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 297 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~ 297 (479)
..+ .+..+++|+.|++++| .+.... ...++|+.|++++|.++. +.. ..++|+.|+++++. ++..
T Consensus 229 ~lp--~~~~l~~L~~L~l~~N-~l~~l~----~~~~~L~~L~l~~N~l~~-----l~~-~~~~L~~L~ls~N~-l~~l-- 292 (454)
T 1jl5_A 229 ELP--ELQNLPFLTTIYADNN-LLKTLP----DLPPSLEALNVRDNYLTD-----LPE-LPQSLTFLDVSENI-FSGL-- 292 (454)
T ss_dssp SCC--CCTTCTTCCEEECCSS-CCSSCC----SCCTTCCEEECCSSCCSC-----CCC-CCTTCCEEECCSSC-CSEE--
T ss_pred ccc--ccCCCCCCCEEECCCC-cCCccc----ccccccCEEECCCCcccc-----cCc-ccCcCCEEECcCCc-cCcc--
Confidence 222 3567788888888774 343211 123677777777776653 111 24567777776643 3220
Q ss_pred HHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCC
Q 011710 298 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 377 (479)
Q Consensus 298 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 377 (479)
... .++|++|+++++ .++. +....++|+.|++++| .++. +.. .+++|+.|++++|
T Consensus 293 ---~~~--~~~L~~L~l~~N-~l~~-----i~~~~~~L~~L~Ls~N-~l~~-----lp~--------~~~~L~~L~L~~N 347 (454)
T 1jl5_A 293 ---SEL--PPNLYYLNASSN-EIRS-----LCDLPPSLEELNVSNN-KLIE-----LPA--------LPPRLERLIASFN 347 (454)
T ss_dssp ---SCC--CTTCCEEECCSS-CCSE-----ECCCCTTCCEEECCSS-CCSC-----CCC--------CCTTCCEEECCSS
T ss_pred ---cCc--CCcCCEEECcCC-cCCc-----ccCCcCcCCEEECCCC-cccc-----ccc--------cCCcCCEEECCCC
Confidence 000 145666666653 3332 0111135666666655 3331 111 3455666666655
Q ss_pred CCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 378 GGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 378 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
. ++. +.. .+++|+.|++++|.
T Consensus 348 ~-l~~-----lp~-~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 348 H-LAE-----VPE-LPQNLKQLHVEYNP 368 (454)
T ss_dssp C-CSC-----CCC-CCTTCCEEECCSSC
T ss_pred c-ccc-----ccc-hhhhccEEECCCCC
Confidence 4 331 111 24556666665554
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.44 E-value=1.9e-13 Score=138.25 Aligned_cols=242 Identities=18% Similarity=0.127 Sum_probs=118.8
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
.++|++|+|+++.+.. ++ ..+++|++|++++|.. +. ++. .+++|++|+++++ .+..
T Consensus 60 ~~~L~~L~L~~N~l~~--lp---~~l~~L~~L~Ls~N~l---------~~--lp~--~l~~L~~L~Ls~N------~l~~ 115 (622)
T 3g06_A 60 PAHITTLVIPDNNLTS--LP---ALPPELRTLEVSGNQL---------TS--LPV--LPPGLLELSIFSN------PLTH 115 (622)
T ss_dssp CTTCSEEEECSCCCSC--CC---CCCTTCCEEEECSCCC---------SC--CCC--CCTTCCEEEECSC------CCCC
T ss_pred CCCCcEEEecCCCCCC--CC---CcCCCCCEEEcCCCcC---------Cc--CCC--CCCCCCEEECcCC------cCCC
Confidence 3678888888766653 11 1567788888877742 11 111 4567777777542 1222
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+.. .+++|+.|+++++ .++.. ...+++|++|++++|.. +. +....++|+.|+++++ .++
T Consensus 116 l~~--------~l~~L~~L~L~~N-~l~~l-----p~~l~~L~~L~Ls~N~l-~~-----l~~~~~~L~~L~L~~N-~l~ 174 (622)
T 3g06_A 116 LPA--------LPSGLCKLWIFGN-QLTSL-----PVLPPGLQELSVSDNQL-AS-----LPALPSELCKLWAYNN-QLT 174 (622)
T ss_dssp CCC--------CCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSSCC-SC-----CCCCCTTCCEEECCSS-CCS
T ss_pred CCC--------CCCCcCEEECCCC-CCCcC-----CCCCCCCCEEECcCCcC-CC-----cCCccCCCCEEECCCC-CCC
Confidence 221 3566777777763 44431 12246677777666542 11 1113346666666663 333
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011710 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 297 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~ 297 (479)
..+ ..+++|+.|++++| .++... ...++|+.|++++|.++.. .. .+++|+.|+++++ .++...
T Consensus 175 ~l~----~~~~~L~~L~Ls~N-~l~~l~----~~~~~L~~L~L~~N~l~~l-----~~-~~~~L~~L~Ls~N-~L~~lp- 237 (622)
T 3g06_A 175 SLP----MLPSGLQELSVSDN-QLASLP----TLPSELYKLWAYNNRLTSL-----PA-LPSGLKELIVSGN-RLTSLP- 237 (622)
T ss_dssp CCC----CCCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSSC-----CC-CCTTCCEEECCSS-CCSCCC-
T ss_pred CCc----ccCCCCcEEECCCC-CCCCCC----CccchhhEEECcCCccccc-----CC-CCCCCCEEEccCC-ccCcCC-
Confidence 221 24566666666653 333211 1235666666666655421 11 2455666666553 233211
Q ss_pred HHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCC
Q 011710 298 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 377 (479)
Q Consensus 298 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 377 (479)
. .+++|++|+++++ .++... ..+++|+.|++++| .++. +..... .+++|+.|++++|
T Consensus 238 ----~--~l~~L~~L~Ls~N-~L~~lp-----~~~~~L~~L~Ls~N-~L~~--lp~~l~--------~l~~L~~L~L~~N 294 (622)
T 3g06_A 238 ----V--LPSELKELMVSGN-RLTSLP-----MLPSGLLSLSVYRN-QLTR--LPESLI--------HLSSETTVNLEGN 294 (622)
T ss_dssp ----C--CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCCS--CCGGGG--------GSCTTCEEECCSC
T ss_pred ----C--CCCcCcEEECCCC-CCCcCC-----cccccCcEEeCCCC-CCCc--CCHHHh--------hccccCEEEecCC
Confidence 1 1255666666653 443111 03455666666655 4441 111111 3555666666665
Q ss_pred CCCCHHHH
Q 011710 378 GGITQLAF 385 (479)
Q Consensus 378 ~~i~~~~~ 385 (479)
+ ++....
T Consensus 295 ~-l~~~~~ 301 (622)
T 3g06_A 295 P-LSERTL 301 (622)
T ss_dssp C-CCHHHH
T ss_pred C-CCCcCH
Confidence 5 554333
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.44 E-value=4.6e-13 Score=135.51 Aligned_cols=256 Identities=18% Similarity=0.109 Sum_probs=158.2
Q ss_pred CCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccccccccccccccc
Q 011710 59 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRV 138 (479)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 138 (479)
.++++|+++++.++. ++. ...++|++|++++|.. +. ++. .+++|++|+++++ .+..+
T Consensus 40 ~~l~~L~ls~n~L~~--lp~--~l~~~L~~L~L~~N~l---------~~--lp~--~l~~L~~L~Ls~N------~l~~l 96 (622)
T 3g06_A 40 NGNAVLNVGESGLTT--LPD--CLPAHITTLVIPDNNL---------TS--LPA--LPPELRTLEVSGN------QLTSL 96 (622)
T ss_dssp HCCCEEECCSSCCSC--CCS--CCCTTCSEEEECSCCC---------SC--CCC--CCTTCCEEEECSC------CCSCC
T ss_pred CCCcEEEecCCCcCc--cCh--hhCCCCcEEEecCCCC---------CC--CCC--cCCCCCEEEcCCC------cCCcC
Confidence 357788888766652 111 1236888888888742 21 111 4678888888752 12222
Q ss_pred chHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCH
Q 011710 139 NDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN 218 (479)
Q Consensus 139 ~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 218 (479)
+. .+++|+.|+++++ .++... ..+++|+.|++++|.. +. +....++|++|++++| .++.
T Consensus 97 p~--------~l~~L~~L~Ls~N-~l~~l~-----~~l~~L~~L~L~~N~l-~~-----lp~~l~~L~~L~Ls~N-~l~~ 155 (622)
T 3g06_A 97 PV--------LPPGLLELSIFSN-PLTHLP-----ALPSGLCKLWIFGNQL-TS-----LPVLPPGLQELSVSDN-QLAS 155 (622)
T ss_dssp CC--------CCTTCCEEEECSC-CCCCCC-----CCCTTCCEEECCSSCC-SC-----CCCCCTTCCEEECCSS-CCSC
T ss_pred CC--------CCCCCCEEECcCC-cCCCCC-----CCCCCcCEEECCCCCC-Cc-----CCCCCCCCCEEECcCC-cCCC
Confidence 22 4678888888884 554321 1467888888887653 21 1123478888888885 4432
Q ss_pred HHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHH
Q 011710 219 HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCIS 298 (479)
Q Consensus 219 ~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~ 298 (479)
.+ ...++|+.|++++| .++... ..+++|+.|++++|.++. +.. ..++|+.|.+++|. ++.
T Consensus 156 l~----~~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~-----l~~-~~~~L~~L~L~~N~-l~~---- 215 (622)
T 3g06_A 156 LP----ALPSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLAS-----LPT-LPSELYKLWAYNNR-LTS---- 215 (622)
T ss_dssp CC----CCCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSC-----CCC-CCTTCCEEECCSSC-CSS----
T ss_pred cC----CccCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCC-----CCC-ccchhhEEECcCCc-ccc----
Confidence 11 14567888888874 444322 456788888888887764 112 35788888888753 331
Q ss_pred HHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCC
Q 011710 299 ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 299 ~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 378 (479)
+.. ..++|++|+++++ .++... ..+++|+.|++++| .++. +.. .+++|+.|++++|.
T Consensus 216 -l~~--~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~-----lp~--------~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 216 -LPA--LPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTS-----LPM--------LPSGLLSLSVYRNQ 272 (622)
T ss_dssp -CCC--CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSC-----CCC--------CCTTCCEEECCSSC
T ss_pred -cCC--CCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCc-----CCc--------ccccCcEEeCCCCC
Confidence 111 1267888888884 555321 35678888888888 5542 222 36778888888887
Q ss_pred CCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 379 GITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 379 ~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
++.. ...+. .+++|+.|++++|+
T Consensus 273 -L~~l-p~~l~--~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 273 -LTRL-PESLI--HLSSETTVNLEGNP 295 (622)
T ss_dssp -CCSC-CGGGG--GSCTTCEEECCSCC
T ss_pred -CCcC-CHHHh--hccccCEEEecCCC
Confidence 6632 12333 37888888888887
No 72
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.43 E-value=3.7e-16 Score=145.84 Aligned_cols=158 Identities=12% Similarity=0.044 Sum_probs=77.0
Q ss_pred CCccEEeccCCCCCCCccccccch--HHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCC
Q 011710 84 VSLTHLDLRDAPLIEPRITFDLTN--SGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGF 161 (479)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~~~~--~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 161 (479)
.++++|+++++. ++. .....+..+++|++|+++++ +.+.......+ ..+++|+.|+++++
T Consensus 50 ~~l~~L~L~~~~---------l~~~~~~~~~l~~l~~L~~L~L~~~--------n~l~~~~p~~l-~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLN---------LPKPYPIPSSLANLPYLNFLYIGGI--------NNLVGPIPPAI-AKLTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECCC---------CSSCEECCGGGGGCTTCSEEEEEEE--------TTEESCCCGGG-GGCTTCSEEEEEEE
T ss_pred ceEEEEECCCCC---------ccCCcccChhHhCCCCCCeeeCCCC--------CcccccCChhH-hcCCCCCEEECcCC
Confidence 578999999875 332 22346677888888888621 11111111111 45778888888873
Q ss_pred CccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCC-CCCEEecCCCCC
Q 011710 162 CRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GIKVLDLRDCKN 240 (479)
Q Consensus 162 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~ 240 (479)
.+....... +..+++|++|+++++..... +......+++|++|+++++ .+.......+..++ +|+.|+++++ .
T Consensus 112 -~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N-~ 185 (313)
T 1ogq_A 112 -NVSGAIPDF-LSQIKTLVTLDFSYNALSGT--LPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRN-R 185 (313)
T ss_dssp -CCEEECCGG-GGGCTTCCEEECCSSEEESC--CCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSS-E
T ss_pred -eeCCcCCHH-HhCCCCCCEEeCCCCccCCc--CChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCC-e
Confidence 444221112 24567777777766542110 0011223455555555553 22211112233444 5555555543 2
Q ss_pred CChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 241 LGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 241 l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
+.......+..++ |+.|++++|.++
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred eeccCChHHhCCc-ccEEECcCCccc
Confidence 3222223333333 555555555443
No 73
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.43 E-value=6.1e-15 Score=138.44 Aligned_cols=126 Identities=25% Similarity=0.249 Sum_probs=70.7
Q ss_pred CCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCc
Q 011710 202 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 281 (479)
Q Consensus 202 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L 281 (479)
+++|+.|+++++ .++.. ...+..+++|++|++++| .+... ...+..+++|+.|++++|.+.......+. .+++|
T Consensus 182 l~~L~~L~L~~n-~l~~l-p~~l~~l~~L~~L~L~~N-~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L 255 (328)
T 4fcg_A 182 LVNLQSLRLEWT-GIRSL-PASIANLQNLKSLKIRNS-PLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFG--GRAPL 255 (328)
T ss_dssp STTCCEEEEEEE-CCCCC-CGGGGGCTTCCEEEEESS-CCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTT--CCCCC
T ss_pred CCCCCEEECcCC-CcCcc-hHhhcCCCCCCEEEccCC-CCCcC-chhhccCCCCCEEECcCCcchhhhHHHhc--CCCCC
Confidence 566777777664 33321 123556777777777764 34322 22456677777777777655433222222 36777
Q ss_pred cEEecCCCCCCCH--HHHHHHhccCCCCCccEEecCCCCCCC--HHHHHHHHhcCCCCcEEecCCC
Q 011710 282 VKLSLRGCKRLTD--KCISALFDGTSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQC 343 (479)
Q Consensus 282 ~~L~l~~~~~l~~--~~~~~l~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~ 343 (479)
+.|++++|..... ..+.. +++|++|++++|+... +..+ ..+++|+.+.+..+
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~------l~~L~~L~L~~n~~~~~iP~~l----~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHR------LTQLEKLDLRGCVNLSRLPSLI----AQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGG------CTTCCEEECTTCTTCCCCCGGG----GGSCTTCEEECCGG
T ss_pred CEEECCCCCchhhcchhhhc------CCCCCEEeCCCCCchhhccHHH----hhccCceEEeCCHH
Confidence 7777777654431 12222 2677888887764433 2222 25777888777654
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=3.7e-14 Score=140.37 Aligned_cols=166 Identities=17% Similarity=0.163 Sum_probs=74.9
Q ss_pred CCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCc
Q 011710 84 VSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCR 163 (479)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 163 (479)
++|++|+|++|. ++......+..+++|++|+++++. +..... ...+++|+.|+++++ .
T Consensus 34 ~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~------l~~l~~L~~L~Ls~N-~ 91 (487)
T 3oja_A 34 WNVKELDLSGNP---------LSQISAADLAPFTKLELLNLSSNV------LYETLD------LESLSTLRTLDLNNN-Y 91 (487)
T ss_dssp GGCCEEECCSSC---------CCCCCGGGGTTCTTCCEEECTTSC------CEEEEE------CTTCTTCCEEECCSS-E
T ss_pred CCccEEEeeCCc---------CCCCCHHHHhCCCCCCEEEeeCCC------CCCCcc------cccCCCCCEEEecCC-c
Confidence 366666666653 222222344556666666665321 111111 134566666666663 3
Q ss_pred cCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCCh
Q 011710 164 VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGD 243 (479)
Q Consensus 164 l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 243 (479)
++.. ...++|+.|++++|..... . ...+++|+.|+++++ .++......++.+++|+.|++++| .++.
T Consensus 92 l~~l------~~~~~L~~L~L~~N~l~~~-~----~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 158 (487)
T 3oja_A 92 VQEL------LVGPSIETLHAANNNISRV-S----CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN-EIDT 158 (487)
T ss_dssp EEEE------EECTTCCEEECCSSCCCCE-E----ECCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTS-CCCE
T ss_pred CCCC------CCCCCcCEEECcCCcCCCC-C----ccccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCC-CCCC
Confidence 3322 1235555555555432110 0 012345555555553 333322223344555666666553 4444
Q ss_pred HHHHhhh-cCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCC
Q 011710 244 EALRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 288 (479)
Q Consensus 244 ~~~~~l~-~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~ 288 (479)
.....+. .+++|+.|++++|.++.. .... .+++|+.|++++
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~--~l~~L~~L~Ls~ 200 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDV--KGQV--VFAKLKTLDLSS 200 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE--ECCC--CCTTCCEEECCS
T ss_pred cChHHHhhhCCcccEEecCCCccccc--cccc--cCCCCCEEECCC
Confidence 3333333 455566666665555432 1111 245555555555
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=3.8e-15 Score=147.53 Aligned_cols=238 Identities=16% Similarity=0.110 Sum_probs=159.5
Q ss_pred cCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHH
Q 011710 115 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLV 194 (479)
Q Consensus 115 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 194 (479)
.+++|++|+++++ .+..+....+ ..+++|+.|+|+++ .++.... +..+++|+.|++++|.. +..
T Consensus 32 ~~~~L~~L~Ls~n------~l~~~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~l-~~l- 95 (487)
T 3oja_A 32 SAWNVKELDLSGN------PLSQISAADL----APFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNNYV-QEL- 95 (487)
T ss_dssp TGGGCCEEECCSS------CCCCCCGGGG----TTCTTCCEEECTTS-CCEEEEE---CTTCTTCCEEECCSSEE-EEE-
T ss_pred cCCCccEEEeeCC------cCCCCCHHHH----hCCCCCCEEEeeCC-CCCCCcc---cccCCCCCEEEecCCcC-CCC-
Confidence 4558999999762 2333332222 46899999999995 5553221 36789999999998753 211
Q ss_pred HHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHH
Q 011710 195 FHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLR 274 (479)
Q Consensus 195 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~ 274 (479)
...++|+.|++++| .++... ...+++|+.|++++| .++......+..+++|+.|++++|.++......+.
T Consensus 96 -----~~~~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 96 -----LVGPSIETLHAANN-NISRVS---CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp -----EECTTCCEEECCSS-CCCCEE---ECCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred -----CCCCCcCEEECcCC-cCCCCC---ccccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence 13479999999995 444332 125789999999985 67666566677889999999999988876666665
Q ss_pred hhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHH
Q 011710 275 LTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIAL 354 (479)
Q Consensus 275 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 354 (479)
. .+++|+.|+++++. ++.. .....+++|++|+|+++ .++..... ...+++|+.|++++| .++. +
T Consensus 166 ~-~l~~L~~L~Ls~N~-l~~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N-~l~~-----l 229 (487)
T 3oja_A 166 A-SSDTLEHLNLQYNF-IYDV-----KGQVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVL-----I 229 (487)
T ss_dssp G-GTTTCCEEECTTSC-CCEE-----ECCCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCE-----E
T ss_pred h-hCCcccEEecCCCc-cccc-----cccccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCC-cCcc-----c
Confidence 4 58999999999864 4422 11113489999999984 66632111 235789999999998 5553 2
Q ss_pred HhccccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEe
Q 011710 355 ASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGV 401 (479)
Q Consensus 355 ~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l 401 (479)
...+. .+++|+.|++++|+ ++...+..... .+++|+.+.+
T Consensus 230 p~~l~-----~l~~L~~L~l~~N~-l~c~~~~~~~~-~l~~L~~l~~ 269 (487)
T 3oja_A 230 EKALR-----FSQNLEHFDLRGNG-FHCGTLRDFFS-KNQRVQTVAK 269 (487)
T ss_dssp CTTCC-----CCTTCCEEECTTCC-BCHHHHHHHHT-TCHHHHHHHH
T ss_pred chhhc-----cCCCCCEEEcCCCC-CcCcchHHHHH-hCCCCcEEec
Confidence 22121 57889999999998 66333333222 3555655554
No 76
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.41 E-value=5.1e-15 Score=152.30 Aligned_cols=143 Identities=17% Similarity=0.199 Sum_probs=86.8
Q ss_pred hHHHHHHhhhhccceeeccccchhhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHHHHcCCCccEEe
Q 011710 11 NFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLD 90 (479)
Q Consensus 11 ~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 90 (479)
++..++..+|+++++|++++.....+..- ....+++|++|+|+.+.+......++ ..+++|++|+
T Consensus 42 ~l~~vP~~lp~~~~~LdLs~N~i~~l~~~--------------~f~~l~~L~~L~Ls~N~i~~i~~~~f-~~L~~L~~L~ 106 (635)
T 4g8a_A 42 NFYKIPDNLPFSTKNLDLSFNPLRHLGSY--------------SFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLI 106 (635)
T ss_dssp CCSSCCSSSCTTCCEEECTTSCCCEECTT--------------TTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEE
T ss_pred CcCccCCCCCcCCCEEEeeCCCCCCCCHH--------------HHhCCCCCCEEECCCCcCCCcChhHh-cCCCCCCEEE
Confidence 44455555666677777765432221110 02347888888888777664322222 4688888898
Q ss_pred ccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHH
Q 011710 91 LRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFK 170 (479)
Q Consensus 91 l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~ 170 (479)
|++|+ ++......+..+++|++|+++.+ .+..+....+ ..+++|+.|+++++ .+......
T Consensus 107 Ls~N~---------l~~l~~~~f~~L~~L~~L~Ls~N------~l~~l~~~~~----~~L~~L~~L~Ls~N-~l~~~~~~ 166 (635)
T 4g8a_A 107 LTGNP---------IQSLALGAFSGLSSLQKLVAVET------NLASLENFPI----GHLKTLKELNVAHN-LIQSFKLP 166 (635)
T ss_dssp CTTCC---------CCEECGGGGTTCTTCCEEECTTS------CCCCSTTCCC----TTCTTCCEEECCSS-CCCCCCCC
T ss_pred ccCCc---------CCCCCHHHhcCCCCCCEEECCCC------cCCCCChhhh----hcCcccCeeccccC-ccccCCCc
Confidence 88874 33322334667888999998752 2333332222 45788999999884 55432222
Q ss_pred HHHHhCCCCceEEecCCC
Q 011710 171 TILHSCSNLYKLRVSHGT 188 (479)
Q Consensus 171 ~l~~~~~~L~~L~l~~~~ 188 (479)
.....+++|++|+++++.
T Consensus 167 ~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 167 EYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp GGGGGCTTCCEEECCSSC
T ss_pred hhhccchhhhhhcccCcc
Confidence 334668899999998875
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.41 E-value=6.1e-14 Score=130.75 Aligned_cols=253 Identities=16% Similarity=0.101 Sum_probs=146.6
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHH---HHhhhcCCCccEEeccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSG---LQQINQHGKLKHLSLIRSQEFLITY 134 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~---l~~l~~~~~L~~L~l~~~~~~~~~~ 134 (479)
.++|++|+++.+.+ .....+... |++|+++++..-. ..+.... ......+++|++|+++++
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~----~~~~~~~~~~~~~~~~l~~L~~L~L~~n------- 105 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRA----ARIPSRILFGALRVLGISGLQELTLENL------- 105 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEE----EECBHHHHHHHHHHHTTSCCCEEEEEEE-------
T ss_pred CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccC----CCcCHHHHHHHHHhcCcCCccEEEccCC-------
Confidence 45677777776666 223333322 6777777653100 0111111 112225788888888652
Q ss_pred ccccchHHHHHH-HHcCCCCCeEEEcCCCccCHHHHHHHHHhC-----CCCceEEecCCCCCCHHHHHHHHhcCCCccEE
Q 011710 135 FRRVNDLGILLM-ADKCASMESICLGGFCRVTDTGFKTILHSC-----SNLYKLRVSHGTQLTDLVFHDISATSLSLTHV 208 (479)
Q Consensus 135 ~~~~~~~~l~~l-~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 208 (479)
.+.......+ ...+++|+.|++++ +.++.. ...+ ..+ ++|++|+++++.. ..... .....+++|++|
T Consensus 106 --~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~-~~~~-~~l~~~~~~~L~~L~L~~N~l-~~~~~-~~~~~l~~L~~L 178 (312)
T 1wwl_A 106 --EVTGTAPPPLLEATGPDLNILNLRN-VSWATR-DAWL-AELQQWLKPGLKVLSIAQAHS-LNFSC-EQVRVFPALSTL 178 (312)
T ss_dssp --BCBSCCCCCSSSCCSCCCSEEEEES-CBCSSS-SSHH-HHHHTTCCTTCCEEEEESCSC-CCCCT-TTCCCCSSCCEE
T ss_pred --cccchhHHHHHHhcCCCccEEEccC-CCCcch-hHHH-HHHHHhhcCCCcEEEeeCCCC-ccchH-HHhccCCCCCEE
Confidence 2221111111 13578888888888 455543 2222 223 7889999887763 21111 123357789999
Q ss_pred EccCCCCCCHHH-HHHh--hcCCCCCEEecCCCCCCCh---HHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCcc
Q 011710 209 CLRWCNLLTNHA-IKSL--ASNTGIKVLDLRDCKNLGD---EALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV 282 (479)
Q Consensus 209 ~l~~~~~~~~~~-~~~l--~~~~~L~~L~l~~~~~l~~---~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~ 282 (479)
+++++...+..+ ...+ ..+++|++|++++| .++. .....+..+++|+.|++++|.++......... .+++|+
T Consensus 179 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~ 256 (312)
T 1wwl_A 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD-WPSQLN 256 (312)
T ss_dssp ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC-CCTTCC
T ss_pred ECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh-hcCCCC
Confidence 998853332222 2233 67889999999885 5653 22233457889999999999877643111112 368899
Q ss_pred EEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCC
Q 011710 283 KLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIG 347 (479)
Q Consensus 283 ~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~ 347 (479)
.|+++++. ++ .+..... ++|++|++++ +.++.... ...+++|+.|++++| .++
T Consensus 257 ~L~Ls~N~-l~-----~ip~~~~-~~L~~L~Ls~-N~l~~~p~---~~~l~~L~~L~L~~N-~l~ 309 (312)
T 1wwl_A 257 SLNLSFTG-LK-----QVPKGLP-AKLSVLDLSY-NRLDRNPS---PDELPQVGNLSLKGN-PFL 309 (312)
T ss_dssp EEECTTSC-CS-----SCCSSCC-SEEEEEECCS-SCCCSCCC---TTTSCEEEEEECTTC-TTT
T ss_pred EEECCCCc-cC-----hhhhhcc-CCceEEECCC-CCCCCChh---HhhCCCCCEEeccCC-CCC
Confidence 99998854 44 1111112 6899999998 46664311 336889999999998 444
No 78
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.41 E-value=3.4e-13 Score=111.69 Aligned_cols=93 Identities=17% Similarity=0.293 Sum_probs=63.4
Q ss_pred CCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhcc---CCCCCccEEecCCCCCCCHHHHHHHH
Q 011710 253 PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG---TSKLQLQELDLSNLPHLSDNGILTLA 329 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~l~~~~~~~l~ 329 (479)
.+|+.|++++|.+++.++..+.. +++|++|++++|..+++.++..++.. + ++|++|+|++|..+++.++..+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~--~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~--~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEG--LQYVEKIRLCKCHYIEDGCLERLSQLENLQ--KSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTT--CSCCCEEEEESCTTCCHHHHHHHHTCHHHH--HHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcC--CCCCCEEEeCCCCccCHHHHHHHHhccccc--CCCCEEEcCCCCcCCHHHHHHHh
Confidence 35777777777777777776643 77777777777777777777776542 2 35777777777667777776665
Q ss_pred hcCCCCcEEecCCCCCCCHHH
Q 011710 330 TCRVPISELRVRQCPLIGDTS 350 (479)
Q Consensus 330 ~~~~~L~~L~l~~~~~l~~~~ 350 (479)
.|++|+.|++++|+.+++.+
T Consensus 137 -~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 -HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp -GCTTCCEEEEESCTTCCCHH
T ss_pred -cCCCCCEEECCCCCCCCchH
Confidence 36777777777776676654
No 79
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.39 E-value=6.2e-13 Score=110.09 Aligned_cols=109 Identities=19% Similarity=0.340 Sum_probs=78.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHH
Q 011710 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 386 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~ 386 (479)
..|++|++++|. +++.++..+. .|++|+.|+|++|..++|.++..++.... .+++|+.|+|++|..||+.++.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~-----~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLEN-----LQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHH-----HHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhccc-----ccCCCCEEEcCCCCcCCHHHHH
Confidence 467888888874 7887777664 68888888888887788888888775100 1356888888888888888888
Q ss_pred HhhccCCCCccEEEecCCC---CH-HHHHHHHhcCCCceeec
Q 011710 387 WLKKPYFPRLRWLGVTGSV---NR-DILDALARSRPFLNVAC 424 (479)
Q Consensus 387 ~l~~~~~~~L~~L~l~~~~---~~-~~~~~~~~~~p~l~~~~ 424 (479)
.+.. +++|+.|++++|+ +. -.+..+....|.+++..
T Consensus 134 ~L~~--~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~ 173 (176)
T 3e4g_A 134 ALHH--FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL 173 (176)
T ss_dssp HGGG--CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred HHhc--CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEEe
Confidence 8765 7888888888886 22 24566777788777643
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=3.8e-13 Score=125.02 Aligned_cols=103 Identities=22% Similarity=0.244 Sum_probs=47.1
Q ss_pred CCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCC
Q 011710 150 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 229 (479)
Q Consensus 150 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 229 (479)
+++|+.|+++++ .+... .. +..+++|+.|+++++....... ...+++|+.|+++++ .+... ..+..+++
T Consensus 40 l~~L~~L~l~~~-~i~~l--~~-~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~ 108 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTI--EG-VQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGN-PLKNV--SAIAGLQS 108 (308)
T ss_dssp HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSC-CCSCC--GGGTTCTT
T ss_pred cCCcCEEEeeCC-CccCc--hh-hhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCC-cCCCc--hhhcCCCC
Confidence 445666666664 33321 11 2445666666665553211111 334455555555553 23222 13444555
Q ss_pred CCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 230 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 230 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
|+.|++++| .+... ..+..+++|+.|++++|.++
T Consensus 109 L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 109 IKTLDLTST-QITDV--TPLAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp CCEEECTTS-CCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCC-CCCCc--hhhcCCCCCCEEECCCCccC
Confidence 555555553 23221 12445555555555555443
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.38 E-value=8.6e-15 Score=136.58 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=49.9
Q ss_pred cCCCCCeEEEcCCCccCHHHHHHH-HHhCCCCceEEecCCCCCCH-HHHHHHHh-cCCCccEEEccCCCCCCHHHHHHhh
Q 011710 149 KCASMESICLGGFCRVTDTGFKTI-LHSCSNLYKLRVSHGTQLTD-LVFHDISA-TSLSLTHVCLRWCNLLTNHAIKSLA 225 (479)
Q Consensus 149 ~~~~L~~L~l~~~~~l~~~~~~~l-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~ 225 (479)
.+++|+.|+++++ .+.......+ ...+++|++|+++++..... ..+..+.. ..++|++|+++++ .+.......+.
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCC
T ss_pred CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhc
Confidence 3667777777763 4432211111 13456666666665542111 01111111 1245555555552 33333222344
Q ss_pred cCCCCCEEecCCCCCCChH-H-HHhh--hcCCCCcEEEccCCCCc
Q 011710 226 SNTGIKVLDLRDCKNLGDE-A-LRAI--SSLPQLKILLLDGSDIS 266 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~-~-~~~l--~~l~~L~~L~l~~~~l~ 266 (479)
.+++|+.|++++|. +... + ...+ ..+++|+.|++++|.++
T Consensus 171 ~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 171 VFPALSTLDLSDNP-ELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp CCSSCCEEECCSCT-TCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred cCCCCCEEECCCCC-cCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 45555555555532 2211 1 1222 34555555555555444
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.38 E-value=1.3e-12 Score=128.06 Aligned_cols=259 Identities=18% Similarity=0.142 Sum_probs=172.3
Q ss_pred CCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcC-CCccEEecccccccccccc
Q 011710 57 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQH-GKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 57 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~-~~L~~L~l~~~~~~~~~~~ 135 (479)
..++|++|+++++.+.. ++ ..+++|++|++++|.. +. +... ++|++|+++++ .+
T Consensus 89 ~~~~L~~L~l~~n~l~~--lp---~~~~~L~~L~l~~n~l---------~~-----l~~~~~~L~~L~L~~n------~l 143 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTE--LP---ELPQSLKSLLVDNNNL---------KA-----LSDLPPLLEYLGVSNN------QL 143 (454)
T ss_dssp CCTTCSEEECCSSCCSS--CC---CCCTTCCEEECCSSCC---------SC-----CCSCCTTCCEEECCSS------CC
T ss_pred CcCCCCEEEccCCcCCc--cc---cccCCCcEEECCCCcc---------Cc-----ccCCCCCCCEEECcCC------CC
Confidence 35789999998877665 21 2457899999988742 21 2122 68999999753 22
Q ss_pred cccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 011710 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 215 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (479)
..+. . ...+++|+.|+++++ .+... . ...++|++|+++++.. ... . -...+++|+.|+++++ .
T Consensus 144 ~~lp-----~-~~~l~~L~~L~l~~N-~l~~l--p---~~~~~L~~L~L~~n~l-~~l--~-~~~~l~~L~~L~l~~N-~ 206 (454)
T 1jl5_A 144 EKLP-----E-LQNSSFLKIIDVDNN-SLKKL--P---DLPPSLEFIAAGNNQL-EEL--P-ELQNLPFLTAIYADNN-S 206 (454)
T ss_dssp SSCC-----C-CTTCTTCCEEECCSS-CCSCC--C---CCCTTCCEEECCSSCC-SSC--C-CCTTCTTCCEEECCSS-C
T ss_pred CCCc-----c-cCCCCCCCEEECCCC-cCccc--C---CCcccccEEECcCCcC-CcC--c-cccCCCCCCEEECCCC-c
Confidence 2232 1 245888999999984 55531 1 2346899999988753 221 1 1356789999999985 4
Q ss_pred CCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHH
Q 011710 216 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~ 295 (479)
+...+ ...++|+.|++++| .+.. +..+..+++|+.|++++|.++.. .. ..++|+.|+++++. ++.
T Consensus 207 l~~l~----~~~~~L~~L~l~~n-~l~~--lp~~~~l~~L~~L~l~~N~l~~l-----~~-~~~~L~~L~l~~N~-l~~- 271 (454)
T 1jl5_A 207 LKKLP----DLPLSLESIVAGNN-ILEE--LPELQNLPFLTTIYADNNLLKTL-----PD-LPPSLEALNVRDNY-LTD- 271 (454)
T ss_dssp CSSCC----CCCTTCCEEECCSS-CCSS--CCCCTTCTTCCEEECCSSCCSSC-----CS-CCTTCCEEECCSSC-CSC-
T ss_pred CCcCC----CCcCcccEEECcCC-cCCc--ccccCCCCCCCEEECCCCcCCcc-----cc-cccccCEEECCCCc-ccc-
Confidence 43211 12368999999986 5542 23477899999999999987641 12 35789999998864 432
Q ss_pred HHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEcc
Q 011710 296 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 375 (479)
Q Consensus 296 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 375 (479)
+... .++|++|+++++ .++... ...++|+.|++++| .++. +.. ..++|+.|+++
T Consensus 272 ----l~~~--~~~L~~L~ls~N-~l~~l~-----~~~~~L~~L~l~~N-~l~~-----i~~--------~~~~L~~L~Ls 325 (454)
T 1jl5_A 272 ----LPEL--PQSLTFLDVSEN-IFSGLS-----ELPPNLYYLNASSN-EIRS-----LCD--------LPPSLEELNVS 325 (454)
T ss_dssp ----CCCC--CTTCCEEECCSS-CCSEES-----CCCTTCCEEECCSS-CCSE-----ECC--------CCTTCCEEECC
T ss_pred ----cCcc--cCcCCEEECcCC-ccCccc-----CcCCcCCEEECcCC-cCCc-----ccC--------CcCcCCEEECC
Confidence 1111 278999999985 555311 12368999999998 5553 112 23589999999
Q ss_pred CCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 376 NCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 376 ~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
+|. ++. +.. .+++|+.|++++|.
T Consensus 326 ~N~-l~~-----lp~-~~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 326 NNK-LIE-----LPA-LPPRLERLIASFNH 348 (454)
T ss_dssp SSC-CSC-----CCC-CCTTCCEEECCSSC
T ss_pred CCc-ccc-----ccc-cCCcCCEEECCCCc
Confidence 998 553 322 47899999999986
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=7.2e-14 Score=130.19 Aligned_cols=231 Identities=15% Similarity=0.076 Sum_probs=106.0
Q ss_pred CCcEEEeecCccChhHHHHHHH--cCCCccEEeccCCCCCCCccccccchHHHHhh--hcCCCccEEecccccccccccc
Q 011710 60 GIQKLCLSVDYITDAMVGTISQ--GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQI--NQHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 60 ~L~~L~L~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l--~~~~~L~~L~l~~~~~~~~~~~ 135 (479)
.++.+.+....+++..+..+.+ .+++|++|++++|. ++......+ ..+++|++|+++++
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~---------l~~~~~~~~~~~~~~~L~~L~Ls~n-------- 127 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK---------ITGTMPPLPLEATGLALSSLRLRNV-------- 127 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC---------CBSCCCCCSSSCCCBCCSSCEEESC--------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE---------eccchhhhhhhccCCCCCEEEeecc--------
Confidence 4677777776776665555443 45678888888874 222112222 45566666666531
Q ss_pred cccch----HHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcc
Q 011710 136 RRVND----LGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLR 211 (479)
Q Consensus 136 ~~~~~----~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 211 (479)
.+.. .....+ ..+++|+.|+++++ .+....... +..+++|++|++++|......++....
T Consensus 128 -~i~~~~~~~~~~~~-~~~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------ 191 (310)
T 4glp_A 128 -SWATGRSWLAELQQ-WLKPGLKVLSIAQA-HSPAFSCEQ-VRAFPALTSLDLSDNPGLGERGLMAAL------------ 191 (310)
T ss_dssp -CCSSTTSSHHHHHT-TBCSCCCEEEEECC-SSCCCCTTS-CCCCTTCCEEECCSCTTCHHHHHHTTS------------
T ss_pred -cccchhhhhHHHHh-hhccCCCEEEeeCC-CcchhhHHH-hccCCCCCEEECCCCCCccchhhhHHH------------
Confidence 1211 000111 13556666666653 333221111 123444555555444322111111000
Q ss_pred CCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHH--H-hhhcCCCCcEEEccCCCCchHHHHHHHh-hcCCCccEEecC
Q 011710 212 WCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEAL--R-AISSLPQLKILLLDGSDISDVGVSYLRL-TVITSLVKLSLR 287 (479)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~--~-~l~~l~~L~~L~l~~~~l~~~~l~~l~~-~~~~~L~~L~l~ 287 (479)
.+..+++|++|++++| .++.... . .+..+++|+.|++++|.++......+.. ..+++|++|+++
T Consensus 192 -----------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls 259 (310)
T 4glp_A 192 -----------CPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLS 259 (310)
T ss_dssp -----------CTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECC
T ss_pred -----------hhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECC
Confidence 0124455555555553 3332111 1 1234555555555555544322111111 012456666665
Q ss_pred CCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCC
Q 011710 288 GCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIG 347 (479)
Q Consensus 288 ~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~ 347 (479)
++. ++. +.... .++|++|+++++ .++.... ...+++|+.|++++| .++
T Consensus 260 ~N~-l~~-----lp~~~-~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N-~l~ 307 (310)
T 4glp_A 260 FAG-LEQ-----VPKGL-PAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGN-PFL 307 (310)
T ss_dssp SSC-CCS-----CCSCC-CSCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSST-TTS
T ss_pred CCC-CCc-----hhhhh-cCCCCEEECCCC-cCCCCch---hhhCCCccEEECcCC-CCC
Confidence 532 321 01111 157777777773 5543111 235678888888887 444
No 84
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.37 E-value=4.7e-14 Score=132.35 Aligned_cols=221 Identities=20% Similarity=0.212 Sum_probs=110.2
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
.+++++|+|+++.+.. ....+. .+++|++|++++|. ++ .....+..+++|++|+++++ .+..
T Consensus 80 ~~~l~~L~L~~n~l~~-lp~~l~-~l~~L~~L~L~~n~---------l~-~lp~~~~~l~~L~~L~Ls~n------~l~~ 141 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-FPDQAF-RLSHLQHMTIDAAG---------LM-ELPDTMQQFAGLETLTLARN------PLRA 141 (328)
T ss_dssp STTCCEEEEESSCCSS-CCSCGG-GGTTCSEEEEESSC---------CC-CCCSCGGGGTTCSEEEEESC------CCCC
T ss_pred ccceeEEEccCCCchh-cChhhh-hCCCCCEEECCCCC---------cc-chhHHHhccCCCCEEECCCC------cccc
Confidence 3455666666554441 111222 35566666666553 22 01112445556666666532 1111
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHH--------HHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEE
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTI--------LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVC 209 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 209 (479)
+.. ....+++|+.|++++|+..+.. ...+ +..+++|++|+++++.. +. +......+++|++|+
T Consensus 142 lp~-----~l~~l~~L~~L~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~--lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 142 LPA-----SIASLNRLRELSIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWTGI-RS--LPASIANLQNLKSLK 212 (328)
T ss_dssp CCG-----GGGGCTTCCEEEEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEECC-CC--CCGGGGGCTTCCEEE
T ss_pred CcH-----HHhcCcCCCEEECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCCCc-Cc--chHhhcCCCCCCEEE
Confidence 211 1134556666666654322211 1000 12366677777666542 21 111234556777777
Q ss_pred ccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011710 210 LRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 210 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
++++ .+...+ ..+..+++|+.|++++|... ......+..+++|+.|++++|.+.......+.. +++|+.|++++|
T Consensus 213 L~~N-~l~~l~-~~l~~l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--l~~L~~L~L~~n 287 (328)
T 4fcg_A 213 IRNS-PLSALG-PAIHHLPKLEELDLRGCTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR--LTQLEKLDLRGC 287 (328)
T ss_dssp EESS-CCCCCC-GGGGGCTTCCEEECTTCTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG--CTTCCEEECTTC
T ss_pred ccCC-CCCcCc-hhhccCCCCCEEECcCCcch-hhhHHHhcCCCCCCEEECCCCCchhhcchhhhc--CCCCCEEeCCCC
Confidence 7764 333221 13556777777777775333 233344566777777777776544333223333 777777777776
Q ss_pred CCCC--HHHHHHHhccCCCCCccEEecCC
Q 011710 290 KRLT--DKCISALFDGTSKLQLQELDLSN 316 (479)
Q Consensus 290 ~~l~--~~~~~~l~~~~~~~~L~~L~l~~ 316 (479)
...+ +..+..+ ++|+.+.+..
T Consensus 288 ~~~~~iP~~l~~L------~~L~~l~l~~ 310 (328)
T 4fcg_A 288 VNLSRLPSLIAQL------PANCIILVPP 310 (328)
T ss_dssp TTCCCCCGGGGGS------CTTCEEECCG
T ss_pred CchhhccHHHhhc------cCceEEeCCH
Confidence 6544 2333333 6777777765
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.33 E-value=5.7e-12 Score=117.04 Aligned_cols=189 Identities=24% Similarity=0.277 Sum_probs=129.8
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
+++|++|+++++.+.. +..+ ..+++|++|++++|. ++. +..+..+++|++|+++++. +..
T Consensus 40 l~~L~~L~l~~~~i~~--l~~~-~~l~~L~~L~L~~n~---------i~~--~~~~~~l~~L~~L~L~~n~------l~~ 99 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT--IEGV-QYLNNLIGLELKDNQ---------ITD--LAPLKNLTKITELELSGNP------LKN 99 (308)
T ss_dssp HHTCCEEECTTSCCCC--CTTG-GGCTTCCEEECCSSC---------CCC--CGGGTTCCSCCEEECCSCC------CSC
T ss_pred cCCcCEEEeeCCCccC--chhh-hccCCCCEEEccCCc---------CCC--ChhHccCCCCCEEEccCCc------CCC
Confidence 6788888888776655 2233 468889999998874 222 2226778889999887531 222
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+. . ...+++|+.|+++++ .+.... . +..+++|++|+++++....... ...+++|+.|++++| .+.
T Consensus 100 ~~-----~-~~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n-~l~ 164 (308)
T 1h6u_A 100 VS-----A-IAGLQSIKTLDLTST-QITDVT--P-LAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNA-QVS 164 (308)
T ss_dssp CG-----G-GTTCTTCCEEECTTS-CCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSS-CCC
T ss_pred ch-----h-hcCCCCCCEEECCCC-CCCCch--h-hcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCC-cCC
Confidence 21 1 245788999999884 555432 2 3678899999998876422221 456789999999885 454
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCC
Q 011710 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCK 290 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~ 290 (479)
... .+..+++|+.|++++| .+.... .+..+++|+.|++++|.++... .+. .+++|+.|+++++.
T Consensus 165 ~~~--~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~N~l~~~~--~l~--~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 165 DLT--PLANLSKLTTLKADDN-KISDIS--PLASLPNLIEVHLKNNQISDVS--PLA--NTSNLFIVTLTNQT 228 (308)
T ss_dssp CCG--GGTTCTTCCEEECCSS-CCCCCG--GGGGCTTCCEEECTTSCCCBCG--GGT--TCTTCCEEEEEEEE
T ss_pred CCh--hhcCCCCCCEEECCCC-ccCcCh--hhcCCCCCCEEEccCCccCccc--ccc--CCCCCCEEEccCCe
Confidence 432 2678899999999885 554433 3778899999999999887544 243 48999999998853
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.29 E-value=2.9e-13 Score=123.88 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=36.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIR 126 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 126 (479)
.++|++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|++++
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCE---------IQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTT-TTCTTCSEEECTTCC---------CCEECTTTTTTCTTCCEEECTT
T ss_pred CCCccEEECCCCcccccCHhHh-ccccCCcEEECCCCc---------CCccCHHHccCCcCCCEEECCC
Confidence 4578888888777665432233 367888888888874 2222222355667777777754
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.29 E-value=2.3e-13 Score=124.02 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=82.9
Q ss_pred hhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhcc
Q 011710 224 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG 303 (479)
Q Consensus 224 l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 303 (479)
+..+++|++|+++++ .++......+..+++|+.|++++|.++......+. .+++|++|+++++. ++......+
T Consensus 57 ~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~--- 129 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD--QLVNLAELRLDRNQ-LKSLPPRVF--- 129 (270)
T ss_dssp SSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT--TCSSCCEEECCSSC-CCCCCTTTT---
T ss_pred hcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc--cccCCCEEECCCCc-cCeeCHHHh---
Confidence 345555666666553 34333333344556666666666655433222222 25566666665532 221110001
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHH
Q 011710 304 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 383 (479)
Q Consensus 304 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~ 383 (479)
..+++|++|+++++ .++..... ....+++|+.|++++| .++......+. .+++|+.|++++|. ++..
T Consensus 130 ~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~ 196 (270)
T 2o6q_A 130 DSLTKLTYLSLGYN-ELQSLPKG-VFDKLTSLKELRLYNN-QLKRVPEGAFD---------KLTELKTLKLDNNQ-LKRV 196 (270)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTT---------TCTTCCEEECCSSC-CSCC
T ss_pred CcCcCCCEEECCCC-cCCccCHh-HccCCcccceeEecCC-cCcEeChhHhc---------cCCCcCEEECCCCc-CCcC
Confidence 02266777777763 44422111 1225678888888877 44432211111 46788888888886 5543
Q ss_pred HHHHhhccCCCCccEEEecCCC
Q 011710 384 AFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 384 ~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
....+. .+++|+.|++++|+
T Consensus 197 ~~~~~~--~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 197 PEGAFD--SLEKLKMLQLQENP 216 (270)
T ss_dssp CTTTTT--TCTTCCEEECCSSC
T ss_pred CHHHhc--cccCCCEEEecCCC
Confidence 332333 37888888888776
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.28 E-value=8.8e-13 Score=122.79 Aligned_cols=229 Identities=18% Similarity=0.172 Sum_probs=150.7
Q ss_pred CCCCCeEEEcCCCccCHHHHHHHHH--hCCCCceEEecCCCCCCHHHHHHHH-hcCCCccEEEccCCCCCCH----HHHH
Q 011710 150 CASMESICLGGFCRVTDTGFKTILH--SCSNLYKLRVSHGTQLTDLVFHDIS-ATSLSLTHVCLRWCNLLTN----HAIK 222 (479)
Q Consensus 150 ~~~L~~L~l~~~~~l~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~ 222 (479)
...++.+.+.++ .+++..+..+.. .+++|++|+++++...... ...+. ..+++|+.|+++++ .++. ....
T Consensus 63 ~~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTM-PPLPLEATGLALSSLRLRNV-SWATGRSWLAEL 139 (310)
T ss_dssp SCCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCC-CCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHH
T ss_pred hcceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccch-hhhhhhccCCCCCEEEeecc-cccchhhhhHHH
Confidence 346889999985 676665554433 3577999999987632211 11111 56789999999995 4443 2223
Q ss_pred HhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchH-HHHH-H-HhhcCCCccEEecCCCCCCC--HHHH
Q 011710 223 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDV-GVSY-L-RLTVITSLVKLSLRGCKRLT--DKCI 297 (479)
Q Consensus 223 ~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~-~l~~-l-~~~~~~~L~~L~l~~~~~l~--~~~~ 297 (479)
.+..+++|++|++++| .+.......+..+++|+.|++++|.+... ++.. . .. .+++|++|++++|. ++ +...
T Consensus 140 ~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~Ls~N~-l~~l~~~~ 216 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH-KFPAIQNLALRNTG-METPTGVC 216 (310)
T ss_dssp HTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT-SSCCCCSCBCCSSC-CCCHHHHH
T ss_pred HhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh-cCCCCCEEECCCCC-CCchHHHH
Confidence 4457999999999985 56665566777899999999999986543 2221 1 12 58899999999964 54 2222
Q ss_pred HHHhccCCCCCccEEecCCCCCCCHHHHHHHHh--cCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEcc
Q 011710 298 SALFDGTSKLQLQELDLSNLPHLSDNGILTLAT--CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 375 (479)
Q Consensus 298 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 375 (479)
..+.... ++|++|+++++ .++......+.. .+++|++|++++| .++. +... ..++|+.|+++
T Consensus 217 ~~l~~~l--~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~-----lp~~-------~~~~L~~L~Ls 280 (310)
T 4glp_A 217 AALAAAG--VQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQ-----VPKG-------LPAKLRVLDLS 280 (310)
T ss_dssp HHHHHHT--CCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCS-----CCSC-------CCSCCSCEECC
T ss_pred HHHHhcC--CCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCc-----hhhh-------hcCCCCEEECC
Confidence 2222222 89999999994 665431111111 2379999999998 6652 2221 34789999999
Q ss_pred CCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 376 NCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 376 ~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
+|. ++.. ..+. .+++|+.|++++|+
T Consensus 281 ~N~-l~~~--~~~~--~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 281 SNR-LNRA--PQPD--ELPEVDNLTLDGNP 305 (310)
T ss_dssp SCC-CCSC--CCTT--SCCCCSCEECSSTT
T ss_pred CCc-CCCC--chhh--hCCCccEEECcCCC
Confidence 998 6642 1122 48999999999886
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.27 E-value=9.7e-13 Score=119.90 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=48.9
Q ss_pred CCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccccccccccccccc
Q 011710 59 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRV 138 (479)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 138 (479)
...+.++++++.++. ++. ...++|++|++++|. ++......+..+++|++|+++++ .+..+
T Consensus 16 ~~~~~l~~~~~~l~~--ip~--~~~~~l~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~l~~n------~l~~i 76 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA--IPS--NIPADTKKLDLQSNK---------LSSLPSKAFHRLTKLRLLYLNDN------KLQTL 76 (270)
T ss_dssp TTTTEEECTTSCCSS--CCS--CCCTTCSEEECCSSC---------CSCCCTTSSSSCTTCCEEECCSS------CCSCC
T ss_pred CCCCEEEccCCCCCc--cCC--CCCCCCCEEECcCCC---------CCeeCHHHhcCCCCCCEEECCCC------ccCee
Confidence 346667776555543 110 123467777777764 22211223455667777777541 12222
Q ss_pred chHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCC
Q 011710 139 NDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 187 (479)
Q Consensus 139 ~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 187 (479)
....+ ..+++|+.|+++++ .+..... ..+..+++|++|+++++
T Consensus 77 ~~~~~----~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 77 PAGIF----KELKNLETLWVTDN-KLQALPI-GVFDQLVNLAELRLDRN 119 (270)
T ss_dssp CTTTT----SSCTTCCEEECCSS-CCCCCCT-TTTTTCSSCCEEECCSS
T ss_pred Chhhh----cCCCCCCEEECCCC-cCCcCCH-hHcccccCCCEEECCCC
Confidence 21111 33566666666663 3432211 11234555555555544
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.26 E-value=1.7e-13 Score=125.48 Aligned_cols=110 Identities=17% Similarity=0.088 Sum_probs=49.0
Q ss_pred CCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCC
Q 011710 151 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 230 (479)
Q Consensus 151 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 230 (479)
++|+.|+++++ .++...... +..+++|++|+++++.. ..... .....+++|+.|+++++ .+.......+..+++|
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYS-FFSFPELQVLDLSRCEI-QTIED-GAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTT-TTTCTTCSEEECTTCCC-CEECT-TTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTC
T ss_pred CCccEEECCCC-cccccCHhH-hccccCCcEEECCCCcC-CccCH-HHccCCcCCCEEECCCC-ccCccChhhhcCCccc
Confidence 45788888773 555432112 24466677777666532 11110 01223445555555552 3332222233344555
Q ss_pred CEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 231 KVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 231 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
++|+++++ .+.......+..+++|+.|++++|.++
T Consensus 103 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 103 QKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp CEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred cEEECCCC-CccccCchhcccCCCCCEEECcCCccc
Confidence 55555443 232222222344445555555554443
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.21 E-value=7e-12 Score=108.32 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=44.1
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCC
Q 011710 176 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQL 255 (479)
Q Consensus 176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 255 (479)
+++|+.|+++++... ... -...+++|++|++++| .+... ..+..+++|++|++++| .++......+..+++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~---~l~~l~~L~~L~l~~n-~~~~~--~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT---GIEYAHNIKDLTINNI-HATNY--NPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT---TGGGCTTCSEEEEESC-CCSCC--GGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTC
T ss_pred cCCccEEeccCCCcc-ChH---HHhcCCCCCEEEccCC-CCCcc--hhhhcCCCCCEEEeECC-ccCcccChhhcCCCCC
Confidence 445666666554321 111 1233445555555553 22221 12334455555555442 3333333344444455
Q ss_pred cEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011710 256 KILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 256 ~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
+.|++++|.+++.....+.. +++|+.|++++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~--l~~L~~L~L~~n 146 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINT--LPKVNSIDLSYN 146 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTT--CSSCCEEECCSC
T ss_pred CEEEecCCccCcHhHHHHhh--CCCCCEEEccCC
Confidence 55555554444433333332 444444444443
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.20 E-value=1.1e-11 Score=114.04 Aligned_cols=101 Identities=22% Similarity=0.176 Sum_probs=51.2
Q ss_pred hCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCC
Q 011710 175 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQ 254 (479)
Q Consensus 175 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 254 (479)
.+++|+.|+++++...... -...+++|+.|+++++ .++.... +..+++|+.|++++| .+.. +..+..+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~----~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~~--~~~l~~l~~ 113 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN-KVKD--LSSLKDLKK 113 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCC--GGGGTTCTT
T ss_pred hcCcccEEEccCCCcccCh----hHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCC-cCCC--ChhhccCCC
Confidence 3556777777665421111 1234556666666663 3332221 455666666666654 3333 223555666
Q ss_pred CcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011710 255 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 255 L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
|+.|++++|.++.. ..+.. +++|+.|+++++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~--l~~L~~L~l~~n 144 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVH--LPQLESLYLGNN 144 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGG--CTTCCEEECCSS
T ss_pred CCEEECCCCcCCCC--hhhcC--CCCCCEEEccCC
Confidence 66666666655432 22222 555555555553
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.19 E-value=1.5e-12 Score=116.28 Aligned_cols=185 Identities=10% Similarity=0.065 Sum_probs=90.8
Q ss_pred CCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccccccccccccc
Q 011710 57 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 136 (479)
Q Consensus 57 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 136 (479)
..+++++|+++++.+.......+ ..+++|++|++++|..+ +......+..+++|++|+++++. .+.
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~n~~l--------~~i~~~~f~~l~~L~~L~l~~~n-----~l~ 94 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAF-SNLPNISRIYVSIDVTL--------QQLESHSFYNLSKVTHIEIRNTR-----NLT 94 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTT-TTCTTCCEEEEECCSSC--------CEECTTTEESCTTCCEEEEEEET-----TCC
T ss_pred CCCcccEEEEeCCcceEECHHHc-cCCCCCcEEeCCCCCCc--------ceeCHhHcCCCcCCcEEECCCCC-----Cee
Confidence 34578888888777665322222 36888888888887422 22112234567788888885310 112
Q ss_pred ccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCc---eEEecCCCCCCHHHHHHHHhcCCCcc-EEEccC
Q 011710 137 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLY---KLRVSHGTQLTDLVFHDISATSLSLT-HVCLRW 212 (479)
Q Consensus 137 ~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~ 212 (479)
.+....+ ..+++|+.|+++++ .+... .. +..+++|+ .|+++++..+...... ....+++|+ .|++++
T Consensus 95 ~i~~~~f----~~l~~L~~L~l~~n-~l~~l--p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 95 YIDPDAL----KELPLLKFLGIFNT-GLKMF--PD-LTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYN 165 (239)
T ss_dssp EECTTSE----ECCTTCCEEEEEEE-CCCSC--CC-CTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCS
T ss_pred EcCHHHh----CCCCCCCEEeCCCC-CCccc--cc-cccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCC
Confidence 2221111 34677788877773 44331 11 23455555 6666665222211111 122344555 555555
Q ss_pred CCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcC-CCCcEEEccCCCCc
Q 011710 213 CNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSL-PQLKILLLDGSDIS 266 (479)
Q Consensus 213 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l-~~L~~L~l~~~~l~ 266 (479)
+ .+...+...+.. ++|+.|++++|..++......+..+ ++|+.|++++|.++
T Consensus 166 n-~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 166 N-GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp C-CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred C-CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 2 333221111112 4555555555322443333344444 55555555555443
No 94
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.18 E-value=9.6e-11 Score=110.39 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=82.2
Q ss_pred hhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCC--CHH---HHH
Q 011710 224 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRL--TDK---CIS 298 (479)
Q Consensus 224 l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l--~~~---~~~ 298 (479)
+..+|+|+.|.++++..+. +..+ .+++|+.|+|..|.++..++..+....+|+|++|+++.+.+. .+. .+.
T Consensus 168 l~~~P~L~~L~L~g~~~l~---l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS---IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB---CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HhcCCCCcEEEEeCCCCce---eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3466777777776652221 1112 367788888877777777777666434778888777532110 111 111
Q ss_pred HHhccCCCCCccEEecCCCCCCCHHHHHHHHh--cCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccC
Q 011710 299 ALFDGTSKLQLQELDLSNLPHLSDNGILTLAT--CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 376 (479)
Q Consensus 299 ~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 376 (479)
.+.....+|+|++|++.+| .+.+.+...++. .+|+|+.|+|+.| .+++.+...+...+. .+++|+.|++++
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~-----~l~~L~~L~L~~ 316 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVD-----KIKHLKFINMKY 316 (362)
T ss_dssp GGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHH-----HHTTCSEEECCS
T ss_pred HHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcc-----cCCcceEEECCC
Confidence 1111112356666666653 444444444432 3455666666555 566665555544221 345566666665
Q ss_pred CCCCCHHHHHHhhc
Q 011710 377 CGGITQLAFRWLKK 390 (479)
Q Consensus 377 c~~i~~~~~~~l~~ 390 (479)
|. +++.++..+..
T Consensus 317 n~-i~d~~~~~l~~ 329 (362)
T 2ra8_A 317 NY-LSDEMKKELQK 329 (362)
T ss_dssp BB-CCHHHHHHHHH
T ss_pred Cc-CCHHHHHHHHH
Confidence 55 66655555543
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=2.5e-11 Score=104.80 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=78.1
Q ss_pred CCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCcc
Q 011710 203 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV 282 (479)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~ 282 (479)
++|+.|+++++ .+...+ .+..+++|++|++++| .+... ..+..+++|+.|++++|.++......+.. +++|+
T Consensus 44 ~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~l~~n-~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--l~~L~ 115 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDLT--GIEYAHNIKDLTINNI-HATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSG--LTSLT 115 (197)
T ss_dssp HTCCEEEEESS-CCSCCT--TGGGCTTCSEEEEESC-CCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTT--CTTCC
T ss_pred CCccEEeccCC-CccChH--HHhcCCCCCEEEccCC-CCCcc--hhhhcCCCCCEEEeECCccCcccChhhcC--CCCCC
Confidence 36666666663 333222 3456666666666665 33222 24556666666666666666544444443 66666
Q ss_pred EEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCC
Q 011710 283 KLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDD 362 (479)
Q Consensus 283 ~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 362 (479)
.|++++| .+++.....+. .+++|++|++++|..+++.. ....+++|+.|++++| .+++.. .+.
T Consensus 116 ~L~Ls~n-~i~~~~~~~l~---~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n-~i~~~~--~l~------- 178 (197)
T 4ezg_A 116 LLDISHS-AHDDSILTKIN---TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFD-GVHDYR--GIE------- 178 (197)
T ss_dssp EEECCSS-BCBGGGHHHHT---TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTB-CCCCCT--TGG-------
T ss_pred EEEecCC-ccCcHhHHHHh---hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCC-CCcChH--Hhc-------
Confidence 6666664 34433333332 22566666666643244321 1234666666666666 444321 111
Q ss_pred CcCCCCceEEEccCCC
Q 011710 363 RWYGSSIRLLDLYNCG 378 (479)
Q Consensus 363 ~~~~~~L~~L~l~~c~ 378 (479)
.+++|+.|++++|+
T Consensus 179 --~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 179 --DFPKLNQLYAFSQT 192 (197)
T ss_dssp --GCSSCCEEEECBC-
T ss_pred --cCCCCCEEEeeCcc
Confidence 46666666666665
No 96
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.17 E-value=7.7e-12 Score=114.03 Aligned_cols=176 Identities=21% Similarity=0.212 Sum_probs=84.0
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
+++|+.|++.++.+.. +..+ ..+++|++|++++|. ++. ++.+..+++|++|+++++ .+..
T Consensus 40 l~~L~~L~l~~~~i~~--~~~l-~~l~~L~~L~l~~n~---------l~~--~~~l~~l~~L~~L~L~~n------~l~~ 99 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS--VQGI-QYLPNVRYLALGGNK---------LHD--ISALKELTNLTYLILTGN------QLQS 99 (272)
T ss_dssp HTTCCEEECTTSCCCC--CTTG-GGCTTCCEEECTTSC---------CCC--CGGGTTCTTCCEEECTTS------CCCC
T ss_pred ccceeeeeeCCCCccc--cccc-ccCCCCcEEECCCCC---------CCC--chhhcCCCCCCEEECCCC------ccCc
Confidence 5677777777655543 2222 357777777777764 222 234556666777776542 1222
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+....+ ..+++|+.|+++++ .+.... ...+..+++|+.|++++|. ++
T Consensus 100 ~~~~~~----~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~---------------------------l~ 146 (272)
T 3rfs_A 100 LPNGVF----DKLTNLKELVLVEN-QLQSLP-DGVFDKLTNLTYLNLAHNQ---------------------------LQ 146 (272)
T ss_dssp CCTTTT----TTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSC---------------------------CC
T ss_pred cChhHh----cCCcCCCEEECCCC-cCCccC-HHHhccCCCCCEEECCCCc---------------------------cC
Confidence 221111 23556666666653 333221 1111334455555554442 22
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011710 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
......+..+++|+.|++++| .++......+..+++|+.|++++|.++......+. .+++|+.|+++++
T Consensus 147 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N 215 (272)
T 3rfs_A 147 SLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDN 215 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSS
T ss_pred ccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHh--CCcCCCEEEccCC
Confidence 222222334555555555553 34333333344555666666666555432222222 2556666666554
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.17 E-value=4.8e-12 Score=115.36 Aligned_cols=178 Identities=17% Similarity=0.090 Sum_probs=97.6
Q ss_pred hCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCC
Q 011710 175 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQ 254 (479)
Q Consensus 175 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 254 (479)
.+++|+.|.++++...... ....+++|+.|+++++ .+... ..+..+++|++|++++| .++......+..+++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~----~l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ----GIQYLPNVRYLALGGN-KLHDI--SALKELTNLTYLILTGN-QLQSLPNGVFDKLTN 110 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT----TGGGCTTCCEEECTTS-CCCCC--GGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTT
T ss_pred cccceeeeeeCCCCccccc----ccccCCCCcEEECCCC-CCCCc--hhhcCCCCCCEEECCCC-ccCccChhHhcCCcC
Confidence 4678888888776532211 1345677888888774 34332 24567778888888774 555444444667777
Q ss_pred CcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCC
Q 011710 255 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVP 334 (479)
Q Consensus 255 L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 334 (479)
|+.|++++|.++......+. .+++|++|++++|. ++......+ . .+++|++|++++| .++..... ....+++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~-~--~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~ 182 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFD--KLTNLTYLNLAHNQ-LQSLPKGVF-D--KLTNLTELDLSYN-QLQSLPEG-VFDKLTQ 182 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTT--TCTTCCEEECCSSC-CCCCCTTTT-T--TCTTCCEEECCSS-CCCCCCTT-TTTTCTT
T ss_pred CCEEECCCCcCCccCHHHhc--cCCCCCEEECCCCc-cCccCHHHh-c--cCccCCEEECCCC-CcCccCHH-HhcCCcc
Confidence 88888877766643322233 36777777777652 331110000 1 2266777777664 44321111 1124566
Q ss_pred CcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCC
Q 011710 335 ISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 335 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 378 (479)
|+.|++++| .++......+ . .+++|+.|++++|+
T Consensus 183 L~~L~L~~N-~l~~~~~~~~-~--------~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 183 LKDLRLYQN-QLKSVPDGVF-D--------RLTSLQYIWLHDNP 216 (272)
T ss_dssp CCEEECCSS-CCSCCCTTTT-T--------TCTTCCEEECCSSC
T ss_pred CCEEECCCC-cCCccCHHHH-h--------CCcCCCEEEccCCC
Confidence 677777666 4432111111 1 45666666666665
No 98
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.14 E-value=1.2e-11 Score=113.83 Aligned_cols=196 Identities=17% Similarity=0.136 Sum_probs=102.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
++++++++++.+.++.. +. ...+++++|++++|. ++......+..+++|++|+++++ .+..
T Consensus 9 l~~l~~l~~~~~~l~~i--p~--~~~~~l~~L~L~~N~---------l~~~~~~~~~~l~~L~~L~L~~n------~l~~ 69 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTAL--PP--DLPKDTTILHLSENL---------LYTFSLATLMPYTRLTQLNLDRA------ELTK 69 (290)
T ss_dssp STTCCEEECTTSCCSSC--CS--CCCTTCCEEECTTSC---------CSEEEGGGGTTCTTCCEEECTTS------CCCE
T ss_pred cCCccEEECCCCCCCcC--CC--CCCCCCCEEEcCCCc---------CCccCHHHhhcCCCCCEEECCCC------ccCc
Confidence 66777887776655431 10 124578888888774 33322334556777777777542 1222
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+... ..+++|+.|++++ +.+... ..... .+++|+.|+++++ .++
T Consensus 70 ~~~~------~~l~~L~~L~Ls~-N~l~~l--~~~~~--------------------------~l~~L~~L~l~~N-~l~ 113 (290)
T 1p9a_G 70 LQVD------GTLPVLGTLDLSH-NQLQSL--PLLGQ--------------------------TLPALTVLDVSFN-RLT 113 (290)
T ss_dssp EECC------SCCTTCCEEECCS-SCCSSC--CCCTT--------------------------TCTTCCEEECCSS-CCC
T ss_pred ccCC------CCCCcCCEEECCC-CcCCcC--chhhc--------------------------cCCCCCEEECCCC-cCc
Confidence 2111 2456666666666 233311 11112 3345555555542 333
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCH--H
Q 011710 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD--K 295 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~--~ 295 (479)
......+..+++|+.|+++++ .++......+..+++|+.|++++|.++......+. .+++|+.|+++++. ++. .
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~--~l~~L~~L~L~~N~-l~~ip~ 189 (290)
T 1p9a_G 114 SLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN--GLENLDTLLLQENS-LYTIPK 189 (290)
T ss_dssp CCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT--TCTTCCEEECCSSC-CCCCCT
T ss_pred ccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccCHHHhc--CcCCCCEEECCCCc-CCccCh
Confidence 222223445667777777663 45444444455667777777777766533222222 36677777776643 331 1
Q ss_pred HHHHHhccCCCCCccEEecCCCC
Q 011710 296 CISALFDGTSKLQLQELDLSNLP 318 (479)
Q Consensus 296 ~~~~l~~~~~~~~L~~L~l~~~~ 318 (479)
++. ..++|+.|++++++
T Consensus 190 ~~~------~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 190 GFF------GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTT------TTCCCSEEECCSCC
T ss_pred hhc------ccccCCeEEeCCCC
Confidence 111 22678888888744
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.13 E-value=5.3e-11 Score=109.46 Aligned_cols=104 Identities=21% Similarity=0.220 Sum_probs=48.5
Q ss_pred CCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCC
Q 011710 150 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 229 (479)
Q Consensus 150 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 229 (479)
+++|+.|+++++ .+... .. +..+++|+.|+++++....... ...+++|+.|+++++ .++.. ..+..+++
T Consensus 45 l~~L~~L~l~~~-~i~~~--~~-~~~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~ 113 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDEN-KVKDL--SSLKDLKK 113 (291)
T ss_dssp HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCCG--GGGTTCTT
T ss_pred cCcccEEEccCC-CcccC--hh-HhcCCCCCEEEccCCccCCCcc----cccCCCCCEEECCCC-cCCCC--hhhccCCC
Confidence 345555655553 33321 11 2345556666655544221111 334555666666553 33321 22445555
Q ss_pred CCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCch
Q 011710 230 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISD 267 (479)
Q Consensus 230 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~ 267 (479)
|+.|++++| .+... ..+..+++|+.|++++|.++.
T Consensus 114 L~~L~L~~n-~i~~~--~~l~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 114 LKSLSLEHN-GISDI--NGLVHLPQLESLYLGNNKITD 148 (291)
T ss_dssp CCEEECTTS-CCCCC--GGGGGCTTCCEEECCSSCCCC
T ss_pred CCEEECCCC-cCCCC--hhhcCCCCCCEEEccCCcCCc
Confidence 666666553 33322 334455556666665555443
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.12 E-value=2.7e-11 Score=122.46 Aligned_cols=169 Identities=22% Similarity=0.223 Sum_probs=114.7
Q ss_pred HhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCC
Q 011710 174 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLP 253 (479)
Q Consensus 174 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 253 (479)
..+++|+.|+++++...... -...+++|+.|+|++| .+.... .+..+++|+.|+|++| .+.. +..+..++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N-~l~~~~--~l~~l~~L~~L~Ls~N-~l~~--l~~l~~l~ 109 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGN-KLTDIK--PLTNLKNLGWLFLDEN-KIKD--LSSLKDLK 109 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTS-CCCCCG--GGGGCTTCCEEECCSS-CCCC--CTTSTTCT
T ss_pred hcCCCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCC-CCCCCh--hhccCCCCCEEECcCC-CCCC--ChhhccCC
Confidence 45788999999877632211 2456789999999985 444332 2678899999999886 4544 33677889
Q ss_pred CCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCC
Q 011710 254 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 333 (479)
Q Consensus 254 ~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 333 (479)
+|+.|+|++|.+... ..+.. +++|+.|++++|. ++.. ..+ ..+++|+.|+|++| .+..... ...++
T Consensus 110 ~L~~L~Ls~N~l~~l--~~l~~--l~~L~~L~Ls~N~-l~~l--~~l---~~l~~L~~L~Ls~N-~l~~~~~---l~~l~ 175 (605)
T 1m9s_A 110 KLKSLSLEHNGISDI--NGLVH--LPQLESLYLGNNK-ITDI--TVL---SRLTKLDTLSLEDN-QISDIVP---LAGLT 175 (605)
T ss_dssp TCCEEECTTSCCCCC--GGGGG--CTTCSEEECCSSC-CCCC--GGG---GSCTTCSEEECCSS-CCCCCGG---GTTCT
T ss_pred CCCEEEecCCCCCCC--ccccC--CCccCEEECCCCc-cCCc--hhh---cccCCCCEEECcCC-cCCCchh---hccCC
Confidence 999999999987753 33444 8889999998864 4432 111 13378888888885 5543221 34678
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCC
Q 011710 334 PISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 334 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 378 (479)
+|+.|+|++| .+++. ..+. .+++|+.|+|++|+
T Consensus 176 ~L~~L~Ls~N-~i~~l--~~l~---------~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 176 KLQNLYLSKN-HISDL--RALA---------GLKNLDVLELFSQE 208 (605)
T ss_dssp TCCEEECCSS-CCCBC--GGGT---------TCTTCSEEECCSEE
T ss_pred CCCEEECcCC-CCCCC--hHHc---------cCCCCCEEEccCCc
Confidence 8888888888 56542 2222 57888888888886
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.12 E-value=1.9e-12 Score=115.67 Aligned_cols=202 Identities=15% Similarity=0.044 Sum_probs=98.1
Q ss_pred CCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCc
Q 011710 84 VSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCR 163 (479)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 163 (479)
++|++|++++|. ++......+..+++|++|+++++. ....+....+ ..+++|+.|++++|+.
T Consensus 31 ~~l~~L~l~~n~---------l~~i~~~~~~~l~~L~~L~l~~n~-----~l~~i~~~~f----~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 31 PSTQTLKLIETH---------LRTIPSHAFSNLPNISRIYVSIDV-----TLQQLESHSF----YNLSKVTHIEIRNTRN 92 (239)
T ss_dssp TTCCEEEEESCC---------CSEECTTTTTTCTTCCEEEEECCS-----SCCEECTTTE----ESCTTCCEEEEEEETT
T ss_pred CcccEEEEeCCc---------ceEECHHHccCCCCCcEEeCCCCC-----CcceeCHhHc----CCCcCCcEEECCCCCC
Confidence 478888888874 332222235566777777775421 0122222111 3456666666665334
Q ss_pred cCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCC---EEecCCCCC
Q 011710 164 VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK---VLDLRDCKN 240 (479)
Q Consensus 164 l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~---~L~l~~~~~ 240 (479)
+...... .+..+++|+.|+++++. +...+ .+..+++|+ .|+++++..
T Consensus 93 l~~i~~~-~f~~l~~L~~L~l~~n~---------------------------l~~lp--~~~~l~~L~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 93 LTYIDPD-ALKELPLLKFLGIFNTG---------------------------LKMFP--DLTKVYSTDIFFILEITDNPY 142 (239)
T ss_dssp CCEECTT-SEECCTTCCEEEEEEEC---------------------------CCSCC--CCTTCCBCCSEEEEEEESCTT
T ss_pred eeEcCHH-HhCCCCCCCEEeCCCCC---------------------------Ccccc--ccccccccccccEEECCCCcc
Confidence 4422111 11234555555555443 21111 133444454 666666434
Q ss_pred CChHHHHhhhcCCCCc-EEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC-CCccEEecCCCC
Q 011710 241 LGDEALRAISSLPQLK-ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK-LQLQELDLSNLP 318 (479)
Q Consensus 241 l~~~~~~~l~~l~~L~-~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-~~L~~L~l~~~~ 318 (479)
++......+..+++|+ .|++++|.++..... ... .++|+.|+++++..++......+. .+ ++|++|++++ +
T Consensus 143 l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~-~~~--~~~L~~L~L~~n~~l~~i~~~~~~---~l~~~L~~L~l~~-N 215 (239)
T 2xwt_C 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY-AFN--GTKLDAVYLNKNKYLTVIDKDAFG---GVYSGPSLLDVSQ-T 215 (239)
T ss_dssp CCEECTTTTTTTBSSEEEEECCSCCCCEECTT-TTT--TCEEEEEECTTCTTCCEECTTTTT---TCSBCCSEEECTT-C
T ss_pred hhhcCcccccchhcceeEEEcCCCCCcccCHh-hcC--CCCCCEEEcCCCCCcccCCHHHhh---ccccCCcEEECCC-C
Confidence 4444444455666666 677766655532211 112 256777777665334321111111 22 5677777776 3
Q ss_pred CCCHHHHHHHHhcCCCCcEEecCCCC
Q 011710 319 HLSDNGILTLATCRVPISELRVRQCP 344 (479)
Q Consensus 319 ~l~~~~~~~l~~~~~~L~~L~l~~~~ 344 (479)
.++..... .+++|+.|.+.++.
T Consensus 216 ~l~~l~~~----~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 216 SVTALPSK----GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCCCCT----TCTTCSEEECTTC-
T ss_pred ccccCChh----HhccCceeeccCcc
Confidence 44422111 46677777777663
No 102
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.11 E-value=2.7e-10 Score=107.35 Aligned_cols=138 Identities=18% Similarity=0.170 Sum_probs=78.3
Q ss_pred CCCCCEEecCCCCCCChHHHHhhh--cCCCCcEEEccCC---CCchHHH---HHHHh-hcCCCccEEecCCCCCCCHHHH
Q 011710 227 NTGIKVLDLRDCKNLGDEALRAIS--SLPQLKILLLDGS---DISDVGV---SYLRL-TVITSLVKLSLRGCKRLTDKCI 297 (479)
Q Consensus 227 ~~~L~~L~l~~~~~l~~~~~~~l~--~l~~L~~L~l~~~---~l~~~~l---~~l~~-~~~~~L~~L~l~~~~~l~~~~~ 297 (479)
+++|++|++..| .++...+..+. .+|+|+.|+|+.+ ...+.++ ..+.. ..+|+|+.|.+.+|. +++.+.
T Consensus 192 ~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~ 269 (362)
T 2ra8_A 192 RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVV 269 (362)
T ss_dssp CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHH
T ss_pred CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHH
Confidence 455666665543 34555544443 4566666655321 0111111 11110 135677777776643 444444
Q ss_pred HHHhccCCCCCccEEecCCCCCCCHHHHHHHHh---cCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEc
Q 011710 298 SALFDGTSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 374 (479)
Q Consensus 298 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 374 (479)
..++....+++|++|+|+. +.+++.+...+.. .+++|+.|++++| .+++.++..+..+ + ...+++
T Consensus 270 ~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~a--------l--g~~~~~ 337 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKS--------L--PMKIDV 337 (362)
T ss_dssp HHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHH--------C--CSEEEC
T ss_pred HHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHH--------c--CCEEEe
Confidence 4444333347888888876 5788777766653 3678888888888 7888888887762 2 244677
Q ss_pred cCCC
Q 011710 375 YNCG 378 (479)
Q Consensus 375 ~~c~ 378 (479)
++..
T Consensus 338 ~~~~ 341 (362)
T 2ra8_A 338 SDSQ 341 (362)
T ss_dssp CSBC
T ss_pred cCCc
Confidence 6655
No 103
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.08 E-value=2e-11 Score=112.19 Aligned_cols=156 Identities=21% Similarity=0.165 Sum_probs=98.4
Q ss_pred hCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCC
Q 011710 175 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQ 254 (479)
Q Consensus 175 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 254 (479)
.+++|+.|+++++.. +.... ...+++|+.|+++++ .+...+ ..+..+++|+.|+++++ .++......+..+++
T Consensus 53 ~l~~L~~L~L~~n~l-~~~~~---~~~l~~L~~L~Ls~N-~l~~l~-~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~ 125 (290)
T 1p9a_G 53 PYTRLTQLNLDRAEL-TKLQV---DGTLPVLGTLDLSHN-QLQSLP-LLGQTLPALTVLDVSFN-RLTSLPLGALRGLGE 125 (290)
T ss_dssp TCTTCCEEECTTSCC-CEEEC---CSCCTTCCEEECCSS-CCSSCC-CCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTT
T ss_pred cCCCCCEEECCCCcc-CcccC---CCCCCcCCEEECCCC-cCCcCc-hhhccCCCCCEEECCCC-cCcccCHHHHcCCCC
Confidence 455555555555432 11100 034567777777773 443221 12457899999999985 676655567788999
Q ss_pred CcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCC
Q 011710 255 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVP 334 (479)
Q Consensus 255 L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 334 (479)
|+.|++++|.++......+. .+++|+.|+++++. ++......+ ..+++|++|++++ +.++.... .+ ..+++
T Consensus 126 L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~l~~~~~---~~l~~L~~L~L~~-N~l~~ip~-~~-~~~~~ 196 (290)
T 1p9a_G 126 LQELYLKGNELKTLPPGLLT--PTPKLEKLSLANNN-LTELPAGLL---NGLENLDTLLLQE-NSLYTIPK-GF-FGSHL 196 (290)
T ss_dssp CCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSC-CSCCCTTTT---TTCTTCCEEECCS-SCCCCCCT-TT-TTTCC
T ss_pred CCEEECCCCCCCccChhhcc--cccCCCEEECCCCc-CCccCHHHh---cCcCCCCEEECCC-CcCCccCh-hh-ccccc
Confidence 99999999988754333333 38999999999853 442111111 1238999999999 46652111 11 14678
Q ss_pred CcEEecCCCCCC
Q 011710 335 ISELRVRQCPLI 346 (479)
Q Consensus 335 L~~L~l~~~~~l 346 (479)
|+.|.+++|+..
T Consensus 197 L~~l~L~~Np~~ 208 (290)
T 1p9a_G 197 LPFAFLHGNPWL 208 (290)
T ss_dssp CSEEECCSCCBC
T ss_pred CCeEEeCCCCcc
Confidence 999999998643
No 104
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.05 E-value=3.8e-09 Score=89.81 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=50.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHh---cCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEc--cCCCCCC
Q 011710 307 LQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL--YNCGGIT 381 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l--~~c~~i~ 381 (479)
++|++|+|++| .+++.+...++. ..++|++|+|++| .+++.+...++.++. ..++|++|++ ++|. ++
T Consensus 65 ~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~-----~n~~L~~L~L~~~~N~-i~ 136 (185)
T 1io0_A 65 TYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQ-----SNTSLIELRIDNQSQP-LG 136 (185)
T ss_dssp CSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGG-----GCSSCCEEECCCCSSC-CC
T ss_pred CCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHH-----hCCCceEEEecCCCCC-CC
Confidence 45666666653 555555544432 2345666666666 566666666655554 3555666666 4455 66
Q ss_pred HHHHHHhhc--cCCCCccEEEecCCC
Q 011710 382 QLAFRWLKK--PYFPRLRWLGVTGSV 405 (479)
Q Consensus 382 ~~~~~~l~~--~~~~~L~~L~l~~~~ 405 (479)
+.+...+.. ...++|++|++++|.
T Consensus 137 ~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 137 NNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 655444433 124566666666655
No 105
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.05 E-value=3.2e-09 Score=90.26 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=41.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhc---CCCCcEEec--CCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCC
Q 011710 307 LQLQELDLSNLPHLSDNGILTLATC---RVPISELRV--RQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 381 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l--~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~ 381 (479)
++|++|+|++ +.+++.+...++.. .++|++|++ ++| .+++.+...++.++. ..++|++|++++|. ++
T Consensus 93 ~~L~~L~L~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~-----~n~~L~~L~L~~n~-i~ 164 (185)
T 1io0_A 93 NTLKSLNVES-NFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLE-----KNTTLLKFGYHFTQ-QG 164 (185)
T ss_dssp SSCCEEECCS-SCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHH-----HCSSCCEEECCCSS-HH
T ss_pred CCcCEEECcC-CcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHH-----hCCCcCEEeccCCC-CC
Confidence 4566666666 36666665555433 345666666 555 666666666555444 45667777776665 55
Q ss_pred HHH
Q 011710 382 QLA 384 (479)
Q Consensus 382 ~~~ 384 (479)
..+
T Consensus 165 ~~~ 167 (185)
T 1io0_A 165 PRL 167 (185)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.04 E-value=1.1e-10 Score=117.93 Aligned_cols=168 Identities=23% Similarity=0.242 Sum_probs=121.5
Q ss_pred cCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCC
Q 011710 149 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 228 (479)
Q Consensus 149 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 228 (479)
.+++|+.|+++++ .+... .. +..+++|+.|++++|....... ...+++|+.|+|++| .+... ..+..++
T Consensus 41 ~L~~L~~L~l~~n-~i~~l--~~-l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~l~~l--~~l~~l~ 109 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDEN-KIKDL--SSLKDLK 109 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCC--TT-GGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSS-CCCCC--TTSTTCT
T ss_pred cCCCCCEEECcCC-CCCCC--hH-HccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCC-CCCCC--hhhccCC
Confidence 4678999999985 55543 22 3678999999999876432221 567889999999996 45432 2577899
Q ss_pred CCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCC
Q 011710 229 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 308 (479)
Q Consensus 229 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 308 (479)
+|+.|++++| .+.. +..+..+++|+.|+|++|.++.. ..+. .+++|+.|++++|. ++.... + . .+++
T Consensus 110 ~L~~L~Ls~N-~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~--~l~~L~~L~Ls~N~-l~~~~~--l-~--~l~~ 176 (605)
T 1m9s_A 110 KLKSLSLEHN-GISD--INGLVHLPQLESLYLGNNKITDI--TVLS--RLTKLDTLSLEDNQ-ISDIVP--L-A--GLTK 176 (605)
T ss_dssp TCCEEECTTS-CCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGG--SCTTCSEEECCSSC-CCCCGG--G-T--TCTT
T ss_pred CCCEEEecCC-CCCC--CccccCCCccCEEECCCCccCCc--hhhc--ccCCCCEEECcCCc-CCCchh--h-c--cCCC
Confidence 9999999986 5554 35677899999999999988764 3344 48999999999864 442211 2 2 3389
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCC
Q 011710 309 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 344 (479)
Q Consensus 309 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 344 (479)
|+.|+|++| .++.. .. ...+++|+.|+|++|+
T Consensus 177 L~~L~Ls~N-~i~~l--~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 177 LQNLYLSKN-HISDL--RA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCEEECCSS-CCCBC--GG-GTTCTTCSEEECCSEE
T ss_pred CCEEECcCC-CCCCC--hH-HccCCCCCEEEccCCc
Confidence 999999995 66543 22 3468999999999983
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.99 E-value=4.4e-11 Score=107.61 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=72.3
Q ss_pred CccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccE
Q 011710 204 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVK 283 (479)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~ 283 (479)
+|+.|+++++ .+.......+..+++|++|+++++ .+.......+..+++|+.|++++|.++......+. .+
T Consensus 36 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l----- 106 (251)
T 3m19_A 36 DTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD--HL----- 106 (251)
T ss_dssp TCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TC-----
T ss_pred CCCEEEccCC-CcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChhHhc--cc-----
Confidence 5566666553 333322223445555555555553 34433333344555555555555544422211111 13
Q ss_pred EecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCC
Q 011710 284 LSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDR 363 (479)
Q Consensus 284 L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~ 363 (479)
++|++|+++++ .++..... ....+++|+.|++++| .++......+.
T Consensus 107 -----------------------~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-------- 152 (251)
T 3m19_A 107 -----------------------TQLDKLYLGGN-QLKSLPSG-VFDRLTKLKELRLNTN-QLQSIPAGAFD-------- 152 (251)
T ss_dssp -----------------------TTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTT--------
T ss_pred -----------------------CCCCEEEcCCC-cCCCcChh-HhccCCcccEEECcCC-cCCccCHHHcC--------
Confidence 45555555552 33311111 1124566666666666 44421111111
Q ss_pred cCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 364 WYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 364 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+++|+.|++++|. ++......+. .+++|+.|++++|+
T Consensus 153 -~l~~L~~L~L~~N~-l~~~~~~~~~--~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 153 -KLTNLQTLSLSTNQ-LQSVPHGAFD--RLGKLQTITLFGNQ 190 (251)
T ss_dssp -TCTTCCEEECCSSC-CSCCCTTTTT--TCTTCCEEECCSCC
T ss_pred -cCcCCCEEECCCCc-CCccCHHHHh--CCCCCCEEEeeCCc
Confidence 35667777777665 4432222232 26677777777665
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.98 E-value=5e-11 Score=107.20 Aligned_cols=127 Identities=19% Similarity=0.164 Sum_probs=84.5
Q ss_pred CCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCC
Q 011710 152 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK 231 (479)
Q Consensus 152 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 231 (479)
+.+.+++++ ..+.... . ...++++.|+++++.... ... .....+++|++|+++++ .+.......+..+++|+
T Consensus 15 ~~~~l~~~~-~~l~~~p-~---~~~~~l~~L~L~~n~l~~-~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 15 GKKEVDCQG-KSLDSVP-S---GIPADTEKLDLQSTGLAT-LSD-ATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGTEEECTT-CCCSSCC-S---CCCTTCCEEECTTSCCCC-CCT-TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred CCeEEecCC-CCccccC-C---CCCCCCCEEEccCCCcCc-cCH-hHhcCcccCCEEECCCC-cCCccCHhHhccCCcCC
Confidence 466777776 3444321 1 113589999999876422 111 12346789999999994 56554444567899999
Q ss_pred EEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011710 232 VLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 232 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
.|+++++ .++......+..+++|+.|++++|.++......+. .+++|+.|+++++
T Consensus 87 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N 141 (251)
T 3m19_A 87 TLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD--RLTKLKELRLNTN 141 (251)
T ss_dssp EEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS
T ss_pred EEECCCC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhc--cCCcccEEECcCC
Confidence 9999985 67666556678899999999999988743322222 2566666666653
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.89 E-value=6.4e-11 Score=112.11 Aligned_cols=227 Identities=13% Similarity=0.108 Sum_probs=128.6
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
.+++++|+|+.+.++.....++ ..+++|++|+|++|...+..+ ...+..+++|..+.+..+ +....
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~--------~~~f~~L~~l~~~l~~~~-----N~l~~ 94 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVLEVIE--------ADVFSNLPKLHEIRIEKA-----NNLLY 94 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSS-TTCTTCCEEEEECCTTCCEEC--------TTSBCSCTTCCEEEEEEE-----TTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHH-cCCCCCCEEECcCCCCCCccC--------hhHhhcchhhhhhhcccC-----Ccccc
Confidence 5689999999887764222222 478999999999986432111 112445666665444221 11222
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+....+ ..+++|+.|+++++ .+....... .....++..|++.++..+.......+......++.|++++ +.++
T Consensus 95 l~~~~f----~~l~~L~~L~l~~n-~l~~~~~~~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~ 167 (350)
T 4ay9_X 95 INPEAF----QNLPNLQYLLISNT-GIKHLPDVH-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQ 167 (350)
T ss_dssp ECTTSB----CCCTTCCEEEEEEE-CCSSCCCCT-TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCC
T ss_pred cCchhh----hhcccccccccccc-ccccCCchh-hcccchhhhhhhccccccccccccchhhcchhhhhhcccc-cccc
Confidence 322222 45788999999883 544321111 1234466777776655444332222233334678888887 4554
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011710 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 297 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~ 297 (479)
..+.. .....+|+.|.+++++.++......+..+++|+.|++++|.++.... ..+.+|+.|.+.++.+++...
T Consensus 168 ~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-----~~~~~L~~L~~l~~~~l~~lP- 240 (350)
T 4ay9_X 168 EIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-----YGLENLKKLRARSTYNLKKLP- 240 (350)
T ss_dssp EECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-----SSCTTCCEEECTTCTTCCCCC-
T ss_pred CCChh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-----hhhccchHhhhccCCCcCcCC-
Confidence 32221 12456788888887667766665667788888888888887764221 145667777776655443110
Q ss_pred HHHhccCCCCCccEEecCC
Q 011710 298 SALFDGTSKLQLQELDLSN 316 (479)
Q Consensus 298 ~~l~~~~~~~~L~~L~l~~ 316 (479)
....+++|+.+++++
T Consensus 241 ----~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 ----TLEKLVALMEASLTY 255 (350)
T ss_dssp ----CTTTCCSCCEEECSC
T ss_pred ----CchhCcChhhCcCCC
Confidence 011225666666654
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.85 E-value=8.3e-10 Score=99.82 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=27.0
Q ss_pred CCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 203 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
++|+.|+++++ .++... .+..+++|+.|++++| .+..... +..+++|+.|++++|.++
T Consensus 41 ~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 41 SGVQNFNGDNS-NIQSLA--GMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp TTCSEEECTTS-CCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCS
T ss_pred CcCcEEECcCC-Ccccch--HHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccC
Confidence 45555555553 333221 3444555555555553 3332221 445555555555555444
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.84 E-value=1.8e-09 Score=88.43 Aligned_cols=110 Identities=14% Similarity=0.122 Sum_probs=49.1
Q ss_pred CCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCC
Q 011710 151 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 230 (479)
Q Consensus 151 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 230 (479)
++|+.|++++| .+.+..+......+++|+.|++++|.. ... .....+++|+.|+++++ .++......+..+++|
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~---~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGL-TSI---ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCC-CCC---TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTC
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCC-CCc---hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCC
Confidence 44666666653 333111111223445555555555432 111 12223445555555553 2322111122345556
Q ss_pred CEEecCCCCCCChH-HHHhhhcCCCCcEEEccCCCCch
Q 011710 231 KVLDLRDCKNLGDE-ALRAISSLPQLKILLLDGSDISD 267 (479)
Q Consensus 231 ~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~l~~ 267 (479)
+.|++++| .++.. ....+..+++|+.|++++|.++.
T Consensus 91 ~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 66666553 34432 23445555566666666655443
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.84 E-value=5.6e-10 Score=91.52 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=20.1
Q ss_pred CCCCCEEecCCCCCCCh-HHHHhhhcCCCCcEEEccCCCCch
Q 011710 227 NTGIKVLDLRDCKNLGD-EALRAISSLPQLKILLLDGSDISD 267 (479)
Q Consensus 227 ~~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~ 267 (479)
.++|+.|++++| .+.+ .....+..+++|+.|++++|.++.
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 56 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTS 56 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCC
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCC
Confidence 355666666664 3331 111233455666666666665543
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.79 E-value=2.6e-09 Score=96.54 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=23.4
Q ss_pred cCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCC
Q 011710 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 288 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~ 288 (479)
.+++|+.|++++| .+... ..+..+++|+.|++++|.++.... +. .+++|+.|++++
T Consensus 39 ~l~~L~~L~l~~n-~i~~l--~~l~~l~~L~~L~L~~N~i~~~~~--l~--~l~~L~~L~L~~ 94 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQSL--AGMQFFTNLKELHLSHNQISDLSP--LK--DLTKLEELSVNR 94 (263)
T ss_dssp HHTTCSEEECTTS-CCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GT--TCSSCCEEECCS
T ss_pred hcCcCcEEECcCC-Ccccc--hHHhhCCCCCEEECCCCccCCChh--hc--cCCCCCEEECCC
Confidence 3444455555443 23221 133444455555555444433221 22 244455555544
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.79 E-value=1.2e-09 Score=91.51 Aligned_cols=84 Identities=25% Similarity=0.330 Sum_probs=38.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHH-HHHHhccccCCCcCCCCceEEEccCCCCCCHHHH
Q 011710 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSV-IALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF 385 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~-~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~ 385 (479)
++|++|++++| .+... +......+++|+.|++++| .+++... ..+. .+++|+.|++++|+ ++....
T Consensus 71 ~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~---------~l~~L~~L~l~~N~-l~~~~~ 137 (168)
T 2ell_A 71 PKLKKLELSEN-RIFGG-LDMLAEKLPNLTHLNLSGN-KLKDISTLEPLK---------KLECLKSLDLFNCE-VTNLND 137 (168)
T ss_dssp SSCCEEEEESC-CCCSC-CCHHHHHCTTCCEEECBSS-SCCSSGGGGGGS---------SCSCCCEEECCSSG-GGTSTT
T ss_pred CCCCEEECcCC-cCchH-HHHHHhhCCCCCEEeccCC-ccCcchhHHHHh---------cCCCCCEEEeeCCc-CcchHH
Confidence 45555555553 33221 1112223556666666665 4443211 1111 35666666666665 333221
Q ss_pred ---HHhhccCCCCccEEEecCCC
Q 011710 386 ---RWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 386 ---~~l~~~~~~~L~~L~l~~~~ 405 (479)
..+. .+|+|+.|++++|.
T Consensus 138 ~~~~~~~--~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 138 YRESVFK--LLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHHHHT--TCSSCCEETTEETT
T ss_pred HHHHHHH--hCccCcEecCCCCC
Confidence 1222 36666666666554
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=9.3e-10 Score=103.17 Aligned_cols=255 Identities=13% Similarity=0.115 Sum_probs=135.9
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCC-Cccccccch--------HHH--Hhhhc--------CCC
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIE-PRITFDLTN--------SGL--QQINQ--------HGK 118 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~-~~~~~~~~~--------~~l--~~l~~--------~~~ 118 (479)
++++++|.+.++ +....+..+...+++|+.|+|++|.... ......+.. ..+ ..+.. |++
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 456777777754 3444455555447778888877764320 000000000 001 13345 788
Q ss_pred ccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecC------------
Q 011710 119 LKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSH------------ 186 (479)
Q Consensus 119 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~------------ 186 (479)
|++|.+.. ....+....+ ..|++|+.|++.. +.+.......+ ..+.++..+....
T Consensus 103 L~~l~L~~-------~i~~I~~~aF----~~~~~L~~l~l~~-n~i~~i~~~aF-~~~~~l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 103 LEKVILSE-------KIKNIEDAAF----KGCDNLKICQIRK-KTAPNLLPEAL-ADSVTAIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp CCC-CBCT-------TCCEECTTTT----TTCTTCCEEEBCC-SSCCEECTTSS-CTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred CcEEECCc-------cccchhHHHh----hcCcccceEEcCC-CCccccchhhh-cCCCceEEecCcchhhhhccccccc
Confidence 88888853 2334444433 4578888888876 33321111111 2233333333221
Q ss_pred -----------------CCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhh-cCCCCCEEecCCCCCCChHHHHh
Q 011710 187 -----------------GTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRA 248 (479)
Q Consensus 187 -----------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~ 248 (479)
...+... +........+++.+.+.+ .+.......+. .|++|+.++++++ .++..+...
T Consensus 170 ~~f~~~~~L~~~i~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~a 245 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAMGKLEDE-IMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFT 245 (329)
T ss_dssp SCEEESCCCEEEEEECTTCCHHHH-HHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTT
T ss_pred cccccccccceeEEecCCCcHHHH-HhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCC-CcceecHhh
Confidence 1111000 000011233556666655 24444444444 4899999999874 577777777
Q ss_pred hhcCCCCcEEEccCCCCchHHHHHHHhhcCCCcc-EEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHH
Q 011710 249 ISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV-KLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILT 327 (479)
Q Consensus 249 l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~ 327 (479)
+..|++|+.+++.++ +...+-..+. .|++|+ .+.+.. .++..+-. .+.+| ++|+.++++. +.++.-+-.+
T Consensus 246 F~~~~~L~~l~l~~n-i~~I~~~aF~--~~~~L~~~l~l~~--~l~~I~~~-aF~~c--~~L~~l~l~~-n~i~~I~~~a 316 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN-LKTIGQRVFS--NCGRLAGTLELPA--SVTAIEFG-AFMGC--DNLRYVLATG-DKITTLGDEL 316 (329)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCEEEEECT--TCCEECTT-TTTTC--TTEEEEEECS-SCCCEECTTT
T ss_pred hhCCCCCCEEECCcc-cceehHHHhh--CChhccEEEEEcc--cceEEchh-hhhCC--ccCCEEEeCC-CccCccchhh
Confidence 889999999999887 4433333333 488899 999976 34322211 22233 8999999976 4554332222
Q ss_pred HHhcCCCCcEEec
Q 011710 328 LATCRVPISELRV 340 (479)
Q Consensus 328 l~~~~~~L~~L~l 340 (479)
+.+|++|+.|..
T Consensus 317 -F~~~~~L~~ly~ 328 (329)
T 3sb4_A 317 -FGNGVPSKLIYK 328 (329)
T ss_dssp -TCTTCCCCEEEC
T ss_pred -hcCCcchhhhcc
Confidence 226889998864
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.77 E-value=2.3e-10 Score=114.91 Aligned_cols=101 Identities=27% Similarity=0.315 Sum_probs=54.1
Q ss_pred CCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcE
Q 011710 178 NLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKI 257 (479)
Q Consensus 178 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 257 (479)
.|+.|+++++.. +.. .. ...+++|+.|+++++ .++..+ ..++.+++|+.|+++++ .++.. ..+..+++|+.
T Consensus 442 ~L~~L~Ls~n~l-~~l--p~-~~~l~~L~~L~Ls~N-~l~~lp-~~~~~l~~L~~L~Ls~N-~l~~l--p~l~~l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLAHKDL-TVL--CH-LEQLLLVTHLDLSHN-RLRALP-PALAALRCLEVLQASDN-ALENV--DGVANLPRLQE 512 (567)
T ss_dssp TCSEEECTTSCC-SSC--CC-GGGGTTCCEEECCSS-CCCCCC-GGGGGCTTCCEEECCSS-CCCCC--GGGTTCSSCCE
T ss_pred CceEEEecCCCC-CCC--cC-ccccccCcEeecCcc-cccccc-hhhhcCCCCCEEECCCC-CCCCC--cccCCCCCCcE
Confidence 455566655432 211 11 334456666666663 343221 24556667777777664 44432 25666677777
Q ss_pred EEccCCCCchHH-HHHHHhhcCCCccEEecCCC
Q 011710 258 LLLDGSDISDVG-VSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 258 L~l~~~~l~~~~-l~~l~~~~~~~L~~L~l~~~ 289 (479)
|++++|.++... ...+.. +++|+.|+++++
T Consensus 513 L~Ls~N~l~~~~~p~~l~~--l~~L~~L~L~~N 543 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVS--CPRLVLLNLQGN 543 (567)
T ss_dssp EECCSSCCCSSSTTGGGGG--CTTCCEEECTTS
T ss_pred EECCCCCCCCCCCcHHHhc--CCCCCEEEecCC
Confidence 777777665443 333333 667777777664
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.73 E-value=1.9e-09 Score=90.30 Aligned_cols=131 Identities=16% Similarity=0.103 Sum_probs=60.5
Q ss_pred CCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCC
Q 011710 151 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 230 (479)
Q Consensus 151 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 230 (479)
++|+.|++++| .+.+..+...+..+++|+.|++++|. +... .....+++|+.|+++++ .+.......+..+++|
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCC
Confidence 45566666553 33311111112345555666655544 2211 12234455666666553 2322111122246666
Q ss_pred CEEecCCCCCCChH-HHHhhhcCCCCcEEEccCCCCchHHH--HHHHhhcCCCccEEecCCC
Q 011710 231 KVLDLRDCKNLGDE-ALRAISSLPQLKILLLDGSDISDVGV--SYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 231 ~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~l~~~~l--~~l~~~~~~~L~~L~l~~~ 289 (479)
+.|++++| .++.. .+..+..+++|+.|++++|.++.... ..... .+++|+.|++++|
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~L~~L~l~~n 157 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK-LLPQLTYLDGYDR 157 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT-TCSSCCEETTEET
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH-hCccCcEecCCCC
Confidence 66666664 34432 22455566666666666665543322 11122 3566666666554
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.68 E-value=2.2e-09 Score=101.96 Aligned_cols=108 Identities=24% Similarity=0.200 Sum_probs=61.6
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCc
Q 011710 177 SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 256 (479)
Q Consensus 177 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 256 (479)
+.++.|+++++. ++......+...+++|+.|++++ +.+.......+..+++|+.|+++++ .+.......+..+++|+
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCC
Confidence 357778887764 22221111111556777777776 3554443334556777777777764 45554444556677777
Q ss_pred EEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011710 257 ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 257 ~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
.|+|++|.++......+.. +++|+.|+++++
T Consensus 116 ~L~L~~N~i~~~~~~~~~~--l~~L~~L~L~~N 146 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFED--MAQLQKLYLSQN 146 (361)
T ss_dssp EEECCSSCCCEECTTTTTT--CTTCCEEECCSS
T ss_pred EEECCCCcccEECHHHhCC--cccCCEEECCCC
Confidence 7777777665433232332 666667766663
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.67 E-value=2.4e-09 Score=101.68 Aligned_cols=135 Identities=18% Similarity=0.103 Sum_probs=86.9
Q ss_pred CCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCC
Q 011710 150 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 229 (479)
Q Consensus 150 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 229 (479)
.+.++.|+|++ +.++......+...+++|+.|+++++.. ..... .....+++|++|++++ +.+.......+..+++
T Consensus 38 ~~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N~i-~~i~~-~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~ 113 (361)
T 2xot_A 38 PSYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISS-EAFVPVPNLRYLDLSS-NHLHTLDEFLFSDLQA 113 (361)
T ss_dssp CTTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSSCC-CEECT-TTTTTCTTCCEEECCS-SCCCEECTTTTTTCTT
T ss_pred CCCCCEEECCC-CCCCccChhhhhhcccccCEEECCCCcC-CccCh-hhccCCCCCCEEECCC-CcCCcCCHHHhCCCcC
Confidence 34588999988 5666542222212678899999987653 22111 1234677899999988 4565544445667889
Q ss_pred CCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHh-hcCCCccEEecCCC
Q 011710 230 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRL-TVITSLVKLSLRGC 289 (479)
Q Consensus 230 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~-~~~~~L~~L~l~~~ 289 (479)
|+.|+++++ .+.......+..+++|+.|+|++|.++......+.. ..+++|+.|+++++
T Consensus 114 L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 114 LEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 999999884 666655566778899999999998776532222100 02566666766663
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.65 E-value=2.4e-10 Score=108.17 Aligned_cols=227 Identities=15% Similarity=0.046 Sum_probs=140.0
Q ss_pred CCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCC
Q 011710 150 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 229 (479)
Q Consensus 150 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 229 (479)
.+++++|+|++ +.++.... ..+..+++|++|+++++........ .....+++++++.+.+++.+.......+..+++
T Consensus 29 ~~~l~~L~Ls~-N~i~~i~~-~~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 29 PRNAIELRFVL-TKLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp CTTCSEEEEES-CCCSEECT-TSSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCCCEEEccC-CcCCCcCH-HHHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 36799999999 57764321 2236789999999998874332111 123356677776665556666554445678899
Q ss_pred CCEEecCCCCCCChHHHHhhhcCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCC
Q 011710 230 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 308 (479)
Q Consensus 230 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 308 (479)
|+.|+++++ .+.......+....++..|++.++ .+.......+.. ....++.|+++++ .++......+ ...+
T Consensus 106 L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~-~~~~l~~L~L~~N-~i~~i~~~~f----~~~~ 178 (350)
T 4ay9_X 106 LQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG-LSFESVILWLNKN-GIQEIHNSAF----NGTQ 178 (350)
T ss_dssp CCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT-SBSSCEEEECCSS-CCCEECTTSS----TTEE
T ss_pred ccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhh-cchhhhhhccccc-cccCCChhhc----cccc
Confidence 999999885 454333333345567778888664 444332222222 2346888999884 3442111111 2267
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHHh
Q 011710 309 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 388 (479)
Q Consensus 309 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l 388 (479)
|++|++++++.++..... .+..+++|+.|++++| .++. +... .+.+|+.|.+.++.+++... .+
T Consensus 179 L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N-~l~~-----lp~~-------~~~~L~~L~~l~~~~l~~lP--~l 242 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPND-VFHGASGPVILDISRT-RIHS-----LPSY-------GLENLKKLRARSTYNLKKLP--TL 242 (350)
T ss_dssp EEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTS-CCCC-----CCSS-------SCTTCCEEECTTCTTCCCCC--CT
T ss_pred hhHHhhccCCcccCCCHH-HhccCcccchhhcCCC-CcCc-----cChh-------hhccchHhhhccCCCcCcCC--Cc
Confidence 999999876666532222 1236889999999999 5553 2111 46778888888777655322 23
Q ss_pred hccCCCCccEEEecCC
Q 011710 389 KKPYFPRLRWLGVTGS 404 (479)
Q Consensus 389 ~~~~~~~L~~L~l~~~ 404 (479)
. .+++|+.+++.+.
T Consensus 243 ~--~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 E--KLVALMEASLTYP 256 (350)
T ss_dssp T--TCCSCCEEECSCH
T ss_pred h--hCcChhhCcCCCC
Confidence 2 4789999998653
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.63 E-value=5.1e-09 Score=91.86 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=20.6
Q ss_pred hcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 225 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 225 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
..+++|+.|+++++ .+.......+..+++|+.|++++|.++
T Consensus 53 ~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 53 SPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred hCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 34555555555553 344333344445555555555555444
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=1.1e-08 Score=95.82 Aligned_cols=127 Identities=14% Similarity=0.065 Sum_probs=83.9
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCC
Q 011710 176 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQL 255 (479)
Q Consensus 176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 255 (479)
..+++.+.+.+. +....+..+...+++|+.|+++++ .+...+...+..|++|+.|++..+ +...+..++..|++|
T Consensus 201 ~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L 275 (329)
T 3sb4_A 201 PRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRL 275 (329)
T ss_dssp GGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTC
T ss_pred ccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhc
Confidence 456777777653 455666666667889999999873 465555556778899999999873 666666778888999
Q ss_pred c-EEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEec
Q 011710 256 K-ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDL 314 (479)
Q Consensus 256 ~-~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l 314 (479)
+ .+.+.+ .++..+-..+. .|++|+.+++.+. .++..+-.. +..| ++|+.+..
T Consensus 276 ~~~l~l~~-~l~~I~~~aF~--~c~~L~~l~l~~n-~i~~I~~~a-F~~~--~~L~~ly~ 328 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGAFM--GCDNLRYVLATGD-KITTLGDEL-FGNG--VPSKLIYK 328 (329)
T ss_dssp CEEEEECT-TCCEECTTTTT--TCTTEEEEEECSS-CCCEECTTT-TCTT--CCCCEEEC
T ss_pred cEEEEEcc-cceEEchhhhh--CCccCCEEEeCCC-ccCccchhh-hcCC--cchhhhcc
Confidence 8 999987 44433333333 4889999998652 343222111 2223 77887763
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.63 E-value=5.5e-08 Score=97.21 Aligned_cols=167 Identities=20% Similarity=0.148 Sum_probs=96.8
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
+++|++|+|++|.+.. ++ ..+++|++|++++|. ++. ++.+. .+|++|+++++ .+..
T Consensus 79 ~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~---------l~~--ip~l~--~~L~~L~Ls~N------~l~~ 134 (571)
T 3cvr_A 79 PPQITVLEITQNALIS--LP---ELPASLEYLDACDNR---------LST--LPELP--ASLKHLDVDNN------QLTM 134 (571)
T ss_dssp CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC---------CSC--CCCCC--TTCCEEECCSS------CCSC
T ss_pred cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC---------CCC--cchhh--cCCCEEECCCC------cCCC
Confidence 5678888888777763 22 357788888888874 222 22222 27888888652 2222
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
++. .+++|+.|++++ +.++.. . ..+++|+.|++++|.. +..+. + .++|+.|+++++ .++
T Consensus 135 lp~--------~l~~L~~L~Ls~-N~l~~l--p---~~l~~L~~L~Ls~N~L-~~lp~--l---~~~L~~L~Ls~N-~L~ 193 (571)
T 3cvr_A 135 LPE--------LPALLEYINADN-NQLTML--P---ELPTSLEVLSVRNNQL-TFLPE--L---PESLEALDVSTN-LLE 193 (571)
T ss_dssp CCC--------CCTTCCEEECCS-SCCSCC--C---CCCTTCCEEECCSSCC-SCCCC--C---CTTCCEEECCSS-CCS
T ss_pred CCC--------cCccccEEeCCC-CccCcC--C---CcCCCcCEEECCCCCC-CCcch--h---hCCCCEEECcCC-CCC
Confidence 322 467788888887 355532 1 1467888888877653 22111 1 167888888774 444
Q ss_pred HHHHHHhhcCCCC-------CEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHh
Q 011710 218 NHAIKSLASNTGI-------KVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRL 275 (479)
Q Consensus 218 ~~~~~~l~~~~~L-------~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~ 275 (479)
..+. +.. +| +.|++++| .++.. ...+..+++|+.|++++|.++......+..
T Consensus 194 ~lp~--~~~--~L~~~~~~L~~L~Ls~N-~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 194 SLPA--VPV--RNHHSEETEIFFRCREN-RITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SCCC--CC----------CCEEEECCSS-CCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred chhh--HHH--hhhcccccceEEecCCC-cceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 2221 211 44 78888774 55532 223445778888888888777655544433
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.62 E-value=8.3e-09 Score=91.13 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=19.3
Q ss_pred cCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCC
Q 011710 331 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 331 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 378 (479)
.+++|+.|++++| .++......+ . .+++|+.|++++|+
T Consensus 133 ~l~~L~~L~L~~N-~l~~~~~~~~-~--------~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 133 RLTHLTHLALDQN-QLKSIPHGAF-D--------RLSSLTHAYLFGNP 170 (229)
T ss_dssp GCTTCSEEECCSS-CCCCCCTTTT-T--------TCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCC-cCCccCHHHH-h--------CCCCCCEEEeeCCC
Confidence 4566666666665 4432111111 1 35666666666665
No 125
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.57 E-value=7.1e-07 Score=75.24 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=69.7
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhcc-CCCCCccEEecCCCCCCCHHHHHHHHhcC---CCCcEEecCCCCCCCHHHHHH
Q 011710 278 ITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILTLATCR---VPISELRVRQCPLIGDTSVIA 353 (479)
Q Consensus 278 ~~~L~~L~l~~~~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~~l~~~~~~~ 353 (479)
-+.|++|+++++..+++.+...++.. .....|+.|+|++ +.+.+.+..+++..+ +.|+.|+|+.| .|++.|...
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~a 117 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLAR 117 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHH
Confidence 44455555544334555444443322 1225677777777 367776665554332 56777777777 777777777
Q ss_pred HHhccccCCCcCCCCceEEEccCCC--CCCHHHHHHhhc--cCCCCccEEEecCCC
Q 011710 354 LASMLVDDDRWYGSSIRLLDLYNCG--GITQLAFRWLKK--PYFPRLRWLGVTGSV 405 (479)
Q Consensus 354 l~~~~~~~~~~~~~~L~~L~l~~c~--~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 405 (479)
++.++. ..+.|+.|+|+++. .+.+.+...++. ..-++|+.|+++.+.
T Consensus 118 la~aL~-----~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTL-----VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTT-----TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHh-----hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 777665 45667777776542 356655433322 125677777776554
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.56 E-value=8.4e-09 Score=90.45 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=15.3
Q ss_pred cCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCC
Q 011710 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 265 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 265 (479)
.+++|++|+++++ .+.......+..+++|+.|++++|.+
T Consensus 103 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 103 GLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp TCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred CCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcC
Confidence 3444444444442 23322223333444444444444433
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.55 E-value=8.9e-09 Score=90.31 Aligned_cols=132 Identities=17% Similarity=0.162 Sum_probs=66.2
Q ss_pred CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCC
Q 011710 228 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKL 307 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 307 (479)
++|+.|+++++ .+.......+..+++|+.|++++|.++......+.. +++|+.|+++++
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~--l~~L~~L~Ls~N------------------ 90 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG--LRSLNSLVLYGN------------------ 90 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT--CSSCCEEECCSS------------------
T ss_pred cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC--CcCCCEEECCCC------------------
Confidence 45666666663 454444445556667777777776665432222222 455555555542
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHHH
Q 011710 308 QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRW 387 (479)
Q Consensus 308 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~ 387 (479)
.++.... ..+..+++|+.|++++| .++......+. .+++|+.|++++|. ++......
T Consensus 91 -----------~l~~l~~-~~f~~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~~~~ 147 (220)
T 2v9t_B 91 -----------KITELPK-SLFEGLFSLQLLLLNAN-KINCLRVDAFQ---------DLHNLNLLSLYDNK-LQTIAKGT 147 (220)
T ss_dssp -----------CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTT---------TCTTCCEEECCSSC-CSCCCTTT
T ss_pred -----------cCCccCH-hHccCCCCCCEEECCCC-CCCEeCHHHcC---------CCCCCCEEECCCCc-CCEECHHH
Confidence 2221100 01124556666666665 33322111111 35666777776665 44333223
Q ss_pred hhccCCCCccEEEecCCC
Q 011710 388 LKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 388 l~~~~~~~L~~L~l~~~~ 405 (479)
+. .+++|+.|++++|+
T Consensus 148 ~~--~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 148 FS--PLRAIQTMHLAQNP 163 (220)
T ss_dssp TT--TCTTCCEEECCSSC
T ss_pred Hh--CCCCCCEEEeCCCC
Confidence 33 26677777777665
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.55 E-value=4.3e-08 Score=97.96 Aligned_cols=174 Identities=14% Similarity=0.115 Sum_probs=90.8
Q ss_pred CCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccc
Q 011710 60 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 139 (479)
Q Consensus 60 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 139 (479)
++++|+|+++.++. ++. ..+++|++|++++|. ++. ++ ..+++|++|+++++ .+..++
T Consensus 60 ~L~~L~Ls~n~L~~--lp~--~l~~~L~~L~Ls~N~---------l~~--ip--~~l~~L~~L~Ls~N------~l~~ip 116 (571)
T 3cvr_A 60 QFSELQLNRLNLSS--LPD--NLPPQITVLEITQNA---------LIS--LP--ELPASLEYLDACDN------RLSTLP 116 (571)
T ss_dssp TCSEEECCSSCCSC--CCS--CCCTTCSEEECCSSC---------CSC--CC--CCCTTCCEEECCSS------CCSCCC
T ss_pred CccEEEeCCCCCCc--cCH--hHcCCCCEEECcCCC---------Ccc--cc--cccCCCCEEEccCC------CCCCcc
Confidence 77788887766654 111 124678888888774 221 22 33567777777642 122222
Q ss_pred hHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHH
Q 011710 140 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH 219 (479)
Q Consensus 140 ~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 219 (479)
. + ..+|+.|++++ +.++.. .. .+++|+.|++++|.. +..+ ..+++|+.|+++++ .++..
T Consensus 117 ~-----l---~~~L~~L~Ls~-N~l~~l--p~---~l~~L~~L~Ls~N~l-~~lp-----~~l~~L~~L~Ls~N-~L~~l 175 (571)
T 3cvr_A 117 E-----L---PASLKHLDVDN-NQLTML--PE---LPALLEYINADNNQL-TMLP-----ELPTSLEVLSVRNN-QLTFL 175 (571)
T ss_dssp C-----C---CTTCCEEECCS-SCCSCC--CC---CCTTCCEEECCSSCC-SCCC-----CCCTTCCEEECCSS-CCSCC
T ss_pred h-----h---hcCCCEEECCC-CcCCCC--CC---cCccccEEeCCCCcc-CcCC-----CcCCCcCEEECCCC-CCCCc
Confidence 1 1 12677777777 355431 11 466777777776653 2111 14557777777764 33332
Q ss_pred HHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCC-------cEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011710 220 AIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQL-------KILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 220 ~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L-------~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
+. +. ++|+.|++++| .++.... +.. +| +.|++++|.++... ..+.. +++|+.|+++++
T Consensus 176 p~--l~--~~L~~L~Ls~N-~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp-~~l~~--l~~L~~L~L~~N 240 (571)
T 3cvr_A 176 PE--LP--ESLEALDVSTN-LLESLPA--VPV--RNHHSEETEIFFRCRENRITHIP-ENILS--LDPTCTIILEDN 240 (571)
T ss_dssp CC--CC--TTCCEEECCSS-CCSSCCC--CC----------CCEEEECCSSCCCCCC-GGGGG--SCTTEEEECCSS
T ss_pred ch--hh--CCCCEEECcCC-CCCchhh--HHH--hhhcccccceEEecCCCcceecC-HHHhc--CCCCCEEEeeCC
Confidence 21 22 66777777664 4432211 221 44 77777777665311 11222 666777777664
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.54 E-value=1.7e-08 Score=89.16 Aligned_cols=83 Identities=16% Similarity=0.051 Sum_probs=48.3
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHH
Q 011710 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 386 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~ 386 (479)
++|++|+|+++ .++..... ....+++|+.|++++| .++. +..... .+++|+.|++++|. ++.....
T Consensus 88 ~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N-~l~~--lp~~~~--------~l~~L~~L~L~~N~-l~~~~~~ 153 (229)
T 3e6j_A 88 TQLTVLDLGTN-QLTVLPSA-VFDRLVHLKELFMCCN-KLTE--LPRGIE--------RLTHLTHLALDQNQ-LKSIPHG 153 (229)
T ss_dssp TTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCS--CCTTGG--------GCTTCSEEECCSSC-CCCCCTT
T ss_pred CCcCEEECCCC-cCCccChh-HhCcchhhCeEeccCC-cccc--cCcccc--------cCCCCCEEECCCCc-CCccCHH
Confidence 55556666552 44321111 1124677888888777 5542 111112 57888999998887 6643333
Q ss_pred HhhccCCCCccEEEecCCC
Q 011710 387 WLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 387 ~l~~~~~~~L~~L~l~~~~ 405 (479)
.+. .+++|+.|++++|+
T Consensus 154 ~~~--~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 154 AFD--RLSSLTHAYLFGNP 170 (229)
T ss_dssp TTT--TCTTCCEEECTTSC
T ss_pred HHh--CCCCCCEEEeeCCC
Confidence 333 37888999988876
No 130
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.53 E-value=1.9e-08 Score=87.34 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=17.1
Q ss_pred cCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
.+++|++|+++++ .++......+..+++|+.|++++|.++
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 50 ELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCC
Confidence 4444555555442 333222223334444555555444443
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.53 E-value=3.2e-08 Score=83.40 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=19.7
Q ss_pred cCCCCCEEecCCCCCCChHH-HHhhhcCCCCcEEEccCCCCc
Q 011710 226 SNTGIKVLDLRDCKNLGDEA-LRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~ 266 (479)
.+++|+.|++++| .++... +..+..+++|+.|++++|.++
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 4555555555553 333222 224445555555555555443
No 132
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.53 E-value=1.6e-08 Score=87.91 Aligned_cols=39 Identities=28% Similarity=0.208 Sum_probs=15.6
Q ss_pred cCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCC
Q 011710 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 265 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 265 (479)
.+++|+.|+++++ .+.......+..+++|+.|++++|.+
T Consensus 98 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 98 KLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCcc
Confidence 3444444444442 23322222233444444444444433
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.48 E-value=4.9e-09 Score=105.27 Aligned_cols=123 Identities=22% Similarity=0.174 Sum_probs=85.1
Q ss_pred CccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccE
Q 011710 204 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVK 283 (479)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~ 283 (479)
.|+.|+++++ .++..+ .++.+++|+.|++++| .++. ....+..+++|+.|++++|.++.. +.+.. +++|+.
T Consensus 442 ~L~~L~Ls~n-~l~~lp--~~~~l~~L~~L~Ls~N-~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l--p~l~~--l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLC--HLEQLLLVTHLDLSHN-RLRA-LPPALAALRCLEVLQASDNALENV--DGVAN--LPRLQE 512 (567)
T ss_dssp TCSEEECTTS-CCSSCC--CGGGGTTCCEEECCSS-CCCC-CCGGGGGCTTCCEEECCSSCCCCC--GGGTT--CSSCCE
T ss_pred CceEEEecCC-CCCCCc--CccccccCcEeecCcc-cccc-cchhhhcCCCCCEEECCCCCCCCC--cccCC--CCCCcE
Confidence 6899999985 555432 3778899999999985 5653 234678899999999999988753 34444 899999
Q ss_pred EecCCCCCCCHHH-HHHHhccCCCCCccEEecCCCCCCCHH--HHHHHHhcCCCCcEEec
Q 011710 284 LSLRGCKRLTDKC-ISALFDGTSKLQLQELDLSNLPHLSDN--GILTLATCRVPISELRV 340 (479)
Q Consensus 284 L~l~~~~~l~~~~-~~~l~~~~~~~~L~~L~l~~~~~l~~~--~~~~l~~~~~~L~~L~l 340 (479)
|+++++. ++... ...+. .+++|++|+++++ .++.. ....+...+|+|+.|++
T Consensus 513 L~Ls~N~-l~~~~~p~~l~---~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 513 LLLCNNR-LQQSAAIQPLV---SCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSC-CCSSSTTGGGG---GCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCC-CCCCCCcHHHh---cCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 9999853 44221 11121 2389999999984 55422 23334456899998864
No 134
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.48 E-value=2.4e-08 Score=87.48 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=19.9
Q ss_pred hhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 224 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 224 l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
+..+++|+.|+++++ .+.......+..+++|+.|++++|.++
T Consensus 77 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 77 FEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred hCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCcCC
Confidence 334455555555542 333333333445555555555555444
No 135
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.48 E-value=3.1e-06 Score=71.29 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=38.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcC---CCCcEEecCCCC--CCCHHHHHHHHhccccCCCcCCCCceEEEccCCC
Q 011710 307 LQLQELDLSNLPHLSDNGILTLATCR---VPISELRVRQCP--LIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~--~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 378 (479)
+.|++|+|+. +.|++.+..++++.+ +.|+.|+|+++. .+++.+...++.++. ..++|+.|+++.+.
T Consensus 98 ~tL~~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~-----~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 98 PSLRVLNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE-----ENESLLRVGISFAS 168 (197)
T ss_dssp SSCCEEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH-----HCSSCCEEECCCCC
T ss_pred CccCeEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHH-----hCCCcCeEeccCCC
Confidence 5566666666 466666666665544 346666666441 456666555555544 45667777766544
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.45 E-value=7e-08 Score=81.32 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=49.8
Q ss_pred CCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHH-HHHHhccCCCC
Q 011710 229 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC-ISALFDGTSKL 307 (479)
Q Consensus 229 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~ 307 (479)
+|+.|++++| .++.. ..+..+++|+.|++++|.++......+. .+++|+.|+++++. ++... +..+. .++
T Consensus 43 ~L~~L~Ls~N-~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~-i~~~~~~~~l~---~l~ 113 (176)
T 1a9n_A 43 QFDAIDFSDN-EIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELILTNNS-LVELGDLDPLA---SLK 113 (176)
T ss_dssp CCSEEECCSS-CCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHH--HCTTCCEEECCSCC-CCCGGGGGGGG---GCT
T ss_pred CCCEEECCCC-CCCcc--cccccCCCCCEEECCCCcccccCcchhh--cCCCCCEEECCCCc-CCcchhhHhhh---cCC
Confidence 5555555553 33332 3444555666666666555432211112 25566666665542 32111 11111 125
Q ss_pred CccEEecCCCCCCCHH--HHHHHHhcCCCCcEEecCCC
Q 011710 308 QLQELDLSNLPHLSDN--GILTLATCRVPISELRVRQC 343 (479)
Q Consensus 308 ~L~~L~l~~~~~l~~~--~~~~l~~~~~~L~~L~l~~~ 343 (479)
+|++|+++++ .+... ....+...+++|+.|++++|
T Consensus 114 ~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 114 SLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 6666666663 33211 11122335778888888777
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.40 E-value=1.7e-08 Score=86.88 Aligned_cols=13 Identities=15% Similarity=-0.146 Sum_probs=7.2
Q ss_pred CCCceEEEccCCC
Q 011710 366 GSSIRLLDLYNCG 378 (479)
Q Consensus 366 ~~~L~~L~l~~c~ 378 (479)
+++|+.|++++|+
T Consensus 139 l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 139 LDKLEDLLLAGNP 151 (198)
T ss_dssp TTTCSEEEECSCH
T ss_pred CCCCCEEEecCCc
Confidence 5555555555554
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.34 E-value=5.3e-08 Score=83.82 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=65.7
Q ss_pred HhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCH-HHHHHHh
Q 011710 223 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD-KCISALF 301 (479)
Q Consensus 223 ~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~-~~~~~l~ 301 (479)
.+..+++|+.|++++| .+... ..+..+++|+.|++++|.++. ++.... .+++|+.|+++++. ++. .++..+
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l--~~~~~l~~L~~L~l~~n~l~~--l~~~~~-~~~~L~~L~L~~N~-l~~l~~~~~l- 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKI--SSLSGMENLRILSLGRNLIKK--IENLDA-VADTLEELWISYNQ-IASLSGIEKL- 114 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCC--CCHHHHTTCCEEEEEEEEECS--CSSHHH-HHHHCSEEEEEEEE-CCCHHHHHHH-
T ss_pred HHhcCCCCCEEECCCC-CCccc--cccccCCCCCEEECCCCCccc--ccchhh-cCCcCCEEECcCCc-CCcCCccccC-
Confidence 3456777777777764 34432 255667788888888876653 222222 35678888887753 432 233333
Q ss_pred ccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCC
Q 011710 302 DGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQC 343 (479)
Q Consensus 302 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 343 (479)
++|++|+++++ .++..........+++|+.|++++|
T Consensus 115 -----~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 115 -----VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp -----HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred -----CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence 67888888884 6664332122335788888888888
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.14 E-value=6.8e-08 Score=92.60 Aligned_cols=243 Identities=12% Similarity=0.182 Sum_probs=119.8
Q ss_pred cCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCC
Q 011710 82 GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGF 161 (479)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 161 (479)
.+..++.+.+... ++..+-.++.++ +|+.+.+.. +...+....+. . .+|+.+.+..
T Consensus 111 ~~~~l~~i~ip~~----------i~~I~~~aF~~~-~L~~i~l~~-------~i~~I~~~aF~----~-~~L~~i~lp~- 166 (401)
T 4fdw_A 111 ILKGYNEIILPNS----------VKSIPKDAFRNS-QIAKVVLNE-------GLKSIGDMAFF----N-STVQEIVFPS- 166 (401)
T ss_dssp ECSSCSEEECCTT----------CCEECTTTTTTC-CCSEEECCT-------TCCEECTTTTT----T-CCCCEEECCT-
T ss_pred ecCCccEEEECCc----------cCEehHhhcccC-CccEEEeCC-------CccEECHHhcC----C-CCceEEEeCC-
Confidence 4466666666553 222222233444 677777752 23444444332 2 2577777765
Q ss_pred CccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCC
Q 011710 162 CRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNL 241 (479)
Q Consensus 162 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 241 (479)
.+...+... +..|++|+.+++.++. +...+...+ .+.+|+.+.+.. .+...+..++..|++|+.+.+.. .+
T Consensus 167 -~l~~I~~~a-F~~c~~L~~l~l~~n~-l~~I~~~aF--~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l 237 (401)
T 4fdw_A 167 -TLEQLKEDI-FYYCYNLKKADLSKTK-ITKLPASTF--VYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NV 237 (401)
T ss_dssp -TCCEECSST-TTTCTTCCEEECTTSC-CSEECTTTT--TTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TC
T ss_pred -CccEehHHH-hhCcccCCeeecCCCc-ceEechhhE--eecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--Cc
Confidence 232221111 2567788888876532 111111111 145777777764 34444444556777888888765 34
Q ss_pred ChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCH---HHHHHHhccCCCCCccEEecCCCC
Q 011710 242 GDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD---KCISALFDGTSKLQLQELDLSNLP 318 (479)
Q Consensus 242 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~~~~~~~L~~L~l~~~~ 318 (479)
...+..++.. .+|+.+.+..+ ++..+-..+. .|++|+.+.+.+.....+ .--...+.+| ++|+.+.+.+
T Consensus 238 ~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~--~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c--~~L~~l~l~~-- 309 (401)
T 4fdw_A 238 STIGQEAFRE-SGITTVKLPNG-VTNIASRAFY--YCPELAEVTTYGSTFNDDPEAMIHPYCLEGC--PKLARFEIPE-- 309 (401)
T ss_dssp CEECTTTTTT-CCCSEEEEETT-CCEECTTTTT--TCTTCCEEEEESSCCCCCTTCEECTTTTTTC--TTCCEECCCT--
T ss_pred cCcccccccc-CCccEEEeCCC-ccEEChhHhh--CCCCCCEEEeCCccccCCcccEECHHHhhCC--ccCCeEEeCC--
Confidence 4444444555 57777777543 2222222222 477788777765321100 0001122233 6777777764
Q ss_pred CCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCC
Q 011710 319 HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 319 ~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 378 (479)
.+..-+-.+ +.+|++|+.+.+..+ ++..+-.++. .| +|+.|.+.++.
T Consensus 310 ~i~~I~~~a-F~~c~~L~~l~lp~~--l~~I~~~aF~---------~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 310 SIRILGQGL-LGGNRKVTQLTIPAN--VTQINFSAFN---------NT-GIKEVKVEGTT 356 (401)
T ss_dssp TCCEECTTT-TTTCCSCCEEEECTT--CCEECTTSSS---------SS-CCCEEEECCSS
T ss_pred ceEEEhhhh-hcCCCCccEEEECcc--ccEEcHHhCC---------CC-CCCEEEEcCCC
Confidence 233211111 225677777777543 2211111111 45 67777777664
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.13 E-value=8.7e-07 Score=75.72 Aligned_cols=40 Identities=33% Similarity=0.341 Sum_probs=18.0
Q ss_pred cCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
.+++|+.|+++++ .+.......+..+++|+.|++++|.++
T Consensus 76 ~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 76 NMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp TCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 4444555555442 333333333444455555555554443
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.13 E-value=3.6e-07 Score=78.06 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=17.1
Q ss_pred cCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
.+++|+.|+++++ .+.......+..+++|+.|++++|.++
T Consensus 76 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 76 GASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp TCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred CcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 4444444444442 333333333344444444444444443
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.06 E-value=1.9e-06 Score=73.57 Aligned_cols=80 Identities=24% Similarity=0.286 Sum_probs=42.7
Q ss_pred CccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccE
Q 011710 204 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVK 283 (479)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~ 283 (479)
+|++|++++ +.++..+ ..+..+++|+.|+++++ .++......+..+++|+.|++++|.++......+.. +++|+.
T Consensus 32 ~l~~L~L~~-n~i~~ip-~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~--l~~L~~ 106 (193)
T 2wfh_A 32 DVTELYLDG-NQFTLVP-KELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG--LKSLRL 106 (193)
T ss_dssp TCCEEECCS-SCCCSCC-GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT--CTTCCE
T ss_pred CCCEEECCC-CcCchhH-HHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCC--CCCCCE
Confidence 555555555 2333222 24456667777777663 455444445666677777777776655432222222 455555
Q ss_pred EecCC
Q 011710 284 LSLRG 288 (479)
Q Consensus 284 L~l~~ 288 (479)
|++++
T Consensus 107 L~L~~ 111 (193)
T 2wfh_A 107 LSLHG 111 (193)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 55554
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.99 E-value=9.2e-07 Score=75.53 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=56.0
Q ss_pred HhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCC
Q 011710 174 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLP 253 (479)
Q Consensus 174 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 253 (479)
..+++|++|+++++.. +... ......+++|++|++++ +.+.......+..+++|+.|+++++ .++......+..++
T Consensus 51 ~~l~~L~~L~Ls~N~l-~~~~-~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 126 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQL-TGIE-PNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLN 126 (192)
T ss_dssp GGCTTCCEEECCSSCC-CCBC-TTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCT
T ss_pred ccCCCCCEEECCCCCC-CCcC-HhHcCCcccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCC
Confidence 3455666666655442 1110 01223456777777776 3454433334567889999999884 67665556677889
Q ss_pred CCcEEEccCCCCc
Q 011710 254 QLKILLLDGSDIS 266 (479)
Q Consensus 254 ~L~~L~l~~~~l~ 266 (479)
+|+.|++++|.+.
T Consensus 127 ~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 127 SLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEeCCCCcc
Confidence 9999999998665
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.98 E-value=2.4e-06 Score=71.81 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=16.7
Q ss_pred cCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
.+++|++|+++++ .++......+..+++|+.|++++|.++
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 50 KLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCcc
Confidence 3444444444442 333222222334444444444444443
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.98 E-value=2e-06 Score=72.34 Aligned_cols=62 Identities=27% Similarity=0.270 Sum_probs=29.3
Q ss_pred hcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011710 225 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 225 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
..+++|+.|+++++ .++......+..+++|+.|++++|.++......+. .+++|+.|+++++
T Consensus 73 ~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N 134 (177)
T 2o6r_A 73 DKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTN 134 (177)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSS
T ss_pred cCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCCcceEeCHHHhc--CCcccCEEEecCC
Confidence 34556666666553 34433333344555666666666555422211111 2445555555543
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.86 E-value=1.2e-06 Score=83.79 Aligned_cols=215 Identities=9% Similarity=0.149 Sum_probs=122.1
Q ss_pred CCcEEEeec--CccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011710 60 GIQKLCLSV--DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 60 ~L~~L~L~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
+|+.+.+.. ..+....+ ..|++|+.+++..+. ++...-..+. +.+|+.+.+.. ....
T Consensus 158 ~L~~i~lp~~l~~I~~~aF----~~c~~L~~l~l~~n~---------l~~I~~~aF~-~~~L~~l~lp~-------~l~~ 216 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLKEDIF----YYCYNLKKADLSKTK---------ITKLPASTFV-YAGIEEVLLPV-------TLKE 216 (401)
T ss_dssp CCCEEECCTTCCEECSSTT----TTCTTCCEEECTTSC---------CSEECTTTTT-TCCCSEEECCT-------TCCE
T ss_pred CceEEEeCCCccEehHHHh----hCcccCCeeecCCCc---------ceEechhhEe-ecccCEEEeCC-------chhe
Confidence 688888763 34444332 478899999998753 2221111222 57888888852 2344
Q ss_pred cchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 011710 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+....+ ..|++|+.+.+.. ++...+..++ .. .+|+.+.+...- ...+. .....|++|+.+.+.+. ...
T Consensus 217 I~~~aF----~~~~~L~~l~l~~--~l~~I~~~aF-~~-~~L~~i~lp~~i--~~I~~-~aF~~c~~L~~l~l~~~-~~~ 284 (401)
T 4fdw_A 217 IGSQAF----LKTSQLKTIEIPE--NVSTIGQEAF-RE-SGITTVKLPNGV--TNIAS-RAFYYCPELAEVTTYGS-TFN 284 (401)
T ss_dssp ECTTTT----TTCTTCCCEECCT--TCCEECTTTT-TT-CCCSEEEEETTC--CEECT-TTTTTCTTCCEEEEESS-CCC
T ss_pred ehhhHh----hCCCCCCEEecCC--CccCcccccc-cc-CCccEEEeCCCc--cEECh-hHhhCCCCCCEEEeCCc-ccc
Confidence 444433 4578888888865 2332211222 22 578888875422 11111 12346788888888663 221
Q ss_pred -----HHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCC
Q 011710 218 -----NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRL 292 (479)
Q Consensus 218 -----~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l 292 (479)
..+...+..|++|+.+.+.. .+...+...+..|++|+.+.|..+ ++..+-..+. .| +|+.+.+.+.. +
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~--~~-~L~~l~l~~n~-~ 357 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN--NT-GIKEVKVEGTT-P 357 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS--SS-CCCEEEECCSS-C
T ss_pred CCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC--CC-CCCEEEEcCCC-C
Confidence 12233456888999998874 466666667778889999998664 3332222233 36 89999988743 2
Q ss_pred CHHHHHHHhccCCCCCccEEecCC
Q 011710 293 TDKCISALFDGTSKLQLQELDLSN 316 (479)
Q Consensus 293 ~~~~~~~l~~~~~~~~L~~L~l~~ 316 (479)
.... ...+.++. .+++.|.+..
T Consensus 358 ~~l~-~~~F~~~~-~~l~~l~vp~ 379 (401)
T 4fdw_A 358 PQVF-EKVWYGFP-DDITVIRVPA 379 (401)
T ss_dssp CBCC-CSSCCCSC-TTCCEEEECG
T ss_pred cccc-cccccCCC-CCccEEEeCH
Confidence 2100 01111221 4677888765
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.80 E-value=6.1e-07 Score=86.13 Aligned_cols=148 Identities=12% Similarity=0.162 Sum_probs=71.3
Q ss_pred CCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011710 227 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 306 (479)
Q Consensus 227 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 306 (479)
+.+|+.+.+.. .+...+...+..+.+|+.+.+..+... .+...+. .+..++.+..... .+... .+..|
T Consensus 229 ~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~--~~~~l~~~~~~~~-~i~~~----~F~~~-- 296 (394)
T 4fs7_A 229 KTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFY--NCSGLKKVIYGSV-IVPEK----TFYGC-- 296 (394)
T ss_dssp TCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTT--TCTTCCEEEECSS-EECTT----TTTTC--
T ss_pred cCCCceEEECC--CceecccccccccccceeEEcCCCcce-eeccccc--cccccceeccCce-eeccc----ccccc--
Confidence 45566665543 222223334445666666666554211 0111111 3555665555331 11111 12223
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccCCCcCCCCceEEEccCCCCCCHHHHH
Q 011710 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 386 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~ 386 (479)
.+|+.+.+.. .+..-+-.+ +..|++|+.+.+... ++..+-.++. .|++|+.+.+..+ ++..+-.
T Consensus 297 ~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~~--v~~I~~~aF~---------~c~~L~~i~lp~~--l~~I~~~ 360 (394)
T 4fs7_A 297 SSLTEVKLLD--SVKFIGEEA-FESCTSLVSIDLPYL--VEEIGKRSFR---------GCTSLSNINFPLS--LRKIGAN 360 (394)
T ss_dssp TTCCEEEECT--TCCEECTTT-TTTCTTCCEECCCTT--CCEECTTTTT---------TCTTCCEECCCTT--CCEECTT
T ss_pred cccccccccc--ccceechhh-hcCCCCCCEEEeCCc--ccEEhHHhcc---------CCCCCCEEEECcc--ccEehHH
Confidence 6777777754 232111111 226778888888543 2221111111 5788888888644 4443344
Q ss_pred HhhccCCCCccEEEecCC
Q 011710 387 WLKKPYFPRLRWLGVTGS 404 (479)
Q Consensus 387 ~l~~~~~~~L~~L~l~~~ 404 (479)
++.. |++|+.+.+..+
T Consensus 361 aF~~--C~~L~~i~lp~~ 376 (394)
T 4fs7_A 361 AFQG--CINLKKVELPKR 376 (394)
T ss_dssp TBTT--CTTCCEEEEEGG
T ss_pred HhhC--CCCCCEEEECCC
Confidence 4543 888888887543
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.75 E-value=2.4e-06 Score=88.52 Aligned_cols=12 Identities=8% Similarity=0.193 Sum_probs=1.5
Q ss_pred CCCceEEEccCC
Q 011710 366 GSSIRLLDLYNC 377 (479)
Q Consensus 366 ~~~L~~L~l~~c 377 (479)
...|+.|+++.+
T Consensus 358 p~~l~~l~l~~n 369 (727)
T 4b8c_D 358 PHERRFIEINTD 369 (727)
T ss_dssp CCC---------
T ss_pred ccccceeEeecc
Confidence 355777777766
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.70 E-value=5.4e-07 Score=86.48 Aligned_cols=165 Identities=10% Similarity=0.101 Sum_probs=95.4
Q ss_pred CCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCc
Q 011710 202 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 281 (479)
Q Consensus 202 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L 281 (479)
+.+|+.+.+.. .+...+...+..+..|+.+.+... ........+..++.++.+......+.+..+. .+.+|
T Consensus 229 ~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~-----~~~~L 299 (394)
T 4fs7_A 229 KTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVPEKTFY-----GCSSL 299 (394)
T ss_dssp TCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEECTTTTT-----TCTTC
T ss_pred cCCCceEEECC--CceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeecccccc-----ccccc
Confidence 45677777654 222222223457889999988753 3333444566788888888776655443322 58889
Q ss_pred cEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhccccC
Q 011710 282 VKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDD 361 (479)
Q Consensus 282 ~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 361 (479)
+.+.+... ++..+-. .+..| .+|+.++|.. .++.-+-.+ +.+|.+|+.+.+..+ ++..+-.++.
T Consensus 300 ~~i~l~~~--i~~I~~~-aF~~c--~~L~~i~lp~--~v~~I~~~a-F~~c~~L~~i~lp~~--l~~I~~~aF~------ 363 (394)
T 4fs7_A 300 TEVKLLDS--VKFIGEE-AFESC--TSLVSIDLPY--LVEEIGKRS-FRGCTSLSNINFPLS--LRKIGANAFQ------ 363 (394)
T ss_dssp CEEEECTT--CCEECTT-TTTTC--TTCCEECCCT--TCCEECTTT-TTTCTTCCEECCCTT--CCEECTTTBT------
T ss_pred cccccccc--cceechh-hhcCC--CCCCEEEeCC--cccEEhHHh-ccCCCCCCEEEECcc--ccEehHHHhh------
Confidence 99988652 3321111 12334 7899999965 233222122 237899999999654 2221111111
Q ss_pred CCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEE
Q 011710 362 DRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWL 399 (479)
Q Consensus 362 ~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L 399 (479)
.|++|+.+++..+ ++... ..+ ..|++|+.+
T Consensus 364 ---~C~~L~~i~lp~~--~~~~~-~~F--~~c~~L~~I 393 (394)
T 4fs7_A 364 ---GCINLKKVELPKR--LEQYR-YDF--EDTTKFKWI 393 (394)
T ss_dssp ---TCTTCCEEEEEGG--GGGGG-GGB--CTTCEEEEE
T ss_pred ---CCCCCCEEEECCC--CEEhh-hee--cCCCCCcEE
Confidence 6899999999754 32221 123 248888776
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.67 E-value=1.7e-05 Score=66.32 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=17.1
Q ss_pred cCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
.+++|+.|+++++ .++......+..+++|+.|++++|.++
T Consensus 55 ~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 55 HLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccc
Confidence 4444444444442 333322222334444555555444443
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.67 E-value=1.8e-05 Score=65.96 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=15.7
Q ss_pred cCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCC
Q 011710 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 265 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 265 (479)
.+++|+.|+++++ .+.......+..+++|+.|++++|.+
T Consensus 52 ~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 52 RLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCcc
Confidence 3444444444442 33322222333444444444444433
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.63 E-value=9.5e-06 Score=84.04 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=62.6
Q ss_pred HhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC--HHHHHHH
Q 011710 223 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISAL 300 (479)
Q Consensus 223 ~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~--~~~~~~l 300 (479)
.+..+++|+.|+|+++ .+.... ..+..+++|+.|+|++|.++.. ...+. .+++|+.|+++++. ++ +..+..+
T Consensus 219 ~~~~l~~L~~L~Ls~n-~l~~l~-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~--~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNL-QIFNIS-ANIFKYDFLTRLYLNGNSLTEL-PAEIK--NLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp ---CCCCCCEEECTTS-CCSCCC-GGGGGCCSCSCCBCTTSCCSCC-CGGGG--GGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred hhccCCCCcEEECCCC-CCCCCC-hhhcCCCCCCEEEeeCCcCccc-Chhhh--CCCCCCEEeCcCCc-CCccChhhcCC
Confidence 3456778888888775 343221 2334677888888888877621 12233 37778888887753 33 1122222
Q ss_pred hccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCCHH
Q 011710 301 FDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDT 349 (479)
Q Consensus 301 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 349 (479)
++|++|+|+++ .++.... . ...+++|+.|+|++| .++..
T Consensus 293 ------~~L~~L~L~~N-~l~~lp~-~-~~~l~~L~~L~L~~N-~l~~~ 331 (727)
T 4b8c_D 293 ------FQLKYFYFFDN-MVTTLPW-E-FGNLCNLQFLGVEGN-PLEKQ 331 (727)
T ss_dssp ------TTCSEEECCSS-CCCCCCS-S-TTSCTTCCCEECTTS-CCCSH
T ss_pred ------CCCCEEECCCC-CCCccCh-h-hhcCCCccEEeCCCC-ccCCC
Confidence 67777777774 4441111 1 225677777777777 45533
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.50 E-value=9.1e-06 Score=77.87 Aligned_cols=101 Identities=13% Similarity=0.245 Sum_probs=51.7
Q ss_pred CCcEEEeec--CccChhHHHHHHHcCCCccEEeccCC-CCCCCccccccchHHHHhhhcCCCccEEeccccccccccccc
Q 011710 60 GIQKLCLSV--DYITDAMVGTISQGLVSLTHLDLRDA-PLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 136 (479)
Q Consensus 60 ~L~~L~L~~--~~~~~~~~~~l~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 136 (479)
.|+.+.+-. ..+++..+ ..|.+|+.+.+..+ +. .++..+-.++..|.+|+.+.+.. ...
T Consensus 65 ~L~sI~iP~svt~Ig~~AF----~~C~~L~~i~~~~n~p~-------~l~~Ig~~aF~~c~~L~~i~~~~-------~~~ 126 (394)
T 4gt6_A 65 VLTSVQIPDTVTEIGSNAF----YNCTSLKRVTIQDNKPS-------CVKKIGRQAFMFCSELTDIPILD-------SVT 126 (394)
T ss_dssp CCCEEEECTTCCEECTTTT----TTCTTCCEEEEGGGCCC-------CCCEECTTTTTTCTTCCBCGGGT-------TCS
T ss_pred cCEEEEECCCeeEEhHHHh----hCCccCceEeecCCCCC-------eeeEechhhchhcccceeeccCC-------ccc
Confidence 477777752 45555433 46788888887654 11 12222223445566666665532 122
Q ss_pred ccchHHHHHHHHcCCCCCeEEEcCC-CccCHHHHHHHHHhCCCCceEEecC
Q 011710 137 RVNDLGILLMADKCASMESICLGGF-CRVTDTGFKTILHSCSNLYKLRVSH 186 (479)
Q Consensus 137 ~~~~~~l~~l~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~ 186 (479)
.+....+ ..|.+|+.+.+... ..+.+.. ...|..|+.+.+..
T Consensus 127 ~I~~~aF----~~c~~L~~i~lp~~~~~I~~~~----F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 127 EIDSEAF----HHCEELDTVTIPEGVTSVADGM----FSYCYSLHTVTLPD 169 (394)
T ss_dssp EECTTTT----TTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCT
T ss_pred eehhhhh----hhhcccccccccceeeeecccc----eecccccccccccc
Confidence 3332222 34677777777541 1122211 24566777776653
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.26 E-value=0.00019 Score=68.70 Aligned_cols=282 Identities=12% Similarity=0.174 Sum_probs=123.6
Q ss_pred CCCCcEEEeecC------ccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccc
Q 011710 58 LPGIQKLCLSVD------YITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFL 131 (479)
Q Consensus 58 ~~~L~~L~L~~~------~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 131 (479)
+.+|+.+.+..+ .++...+ ..|.+|+.+.+... ++..+-..+..|.+|+.+.+..
T Consensus 86 C~~L~~i~~~~n~p~~l~~Ig~~aF----~~c~~L~~i~~~~~----------~~~I~~~aF~~c~~L~~i~lp~----- 146 (394)
T 4gt6_A 86 CTSLKRVTIQDNKPSCVKKIGRQAF----MFCSELTDIPILDS----------VTEIDSEAFHHCEELDTVTIPE----- 146 (394)
T ss_dssp CTTCCEEEEGGGCCCCCCEECTTTT----TTCTTCCBCGGGTT----------CSEECTTTTTTCTTCCEEECCT-----
T ss_pred CccCceEeecCCCCCeeeEechhhc----hhcccceeeccCCc----------cceehhhhhhhhcccccccccc-----
Confidence 688999988632 2333222 35677777776543 2222333455788888888852
Q ss_pred cccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCC-CCHHHHHHHHhcCCCccEEEc
Q 011710 132 ITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQ-LTDLVFHDISATSLSLTHVCL 210 (479)
Q Consensus 132 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l 210 (479)
....+.+..+ ..|.+|+.+.+.. .+...+-..+ ....|+.+.+..... +... ....|.+++....
T Consensus 147 --~~~~I~~~~F----~~c~~L~~i~~~~--~~~~I~~~aF--~~~~l~~i~ip~~~~~i~~~----af~~c~~l~~~~~ 212 (394)
T 4gt6_A 147 --GVTSVADGMF----SYCYSLHTVTLPD--SVTAIEERAF--TGTALTQIHIPAKVTRIGTN----AFSECFALSTITS 212 (394)
T ss_dssp --TCCEECTTTT----TTCTTCCEEECCT--TCCEECTTTT--TTCCCSEEEECTTCCEECTT----TTTTCTTCCEEEE
T ss_pred --eeeeecccce----ecccccccccccc--eeeEeccccc--cccceeEEEECCcccccccc----hhhhccccceecc
Confidence 2233333322 3567777777754 2222111111 234677776653221 1111 1223445555544
Q ss_pred cCCCCCC------------HHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcC
Q 011710 211 RWCNLLT------------NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVI 278 (479)
Q Consensus 211 ~~~~~~~------------~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~ 278 (479)
....... ............+..+.+.. .+...+..++..+.+|+.+.+...... .+-..+. .+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~--~c 287 (394)
T 4gt6_A 213 DSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM--NC 287 (394)
T ss_dssp CCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT--TC
T ss_pred cccccccccceeecccccccccccccccccccceEEcCC--cceEcccceeeecccccEEecccccce-ecCcccc--cc
Confidence 3210000 00000000122333444322 222223334556667777766543111 1111112 36
Q ss_pred CCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCC-CCCCHHHHHHHHhcCCCCcEEecCCCCCCCHHHHHHHHhc
Q 011710 279 TSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNL-PHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASM 357 (479)
Q Consensus 279 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 357 (479)
++|+.+.+.. .++..+- ..+..| .+|+.+.|... ..+.+... .+|.+|+.+.+... ++..+-.++.
T Consensus 288 ~~L~~i~l~~--~i~~I~~-~aF~~c--~~L~~i~lp~~v~~I~~~aF----~~C~~L~~i~ip~s--v~~I~~~aF~-- 354 (394)
T 4gt6_A 288 PALQDIEFSS--RITELPE-SVFAGC--ISLKSIDIPEGITQILDDAF----AGCEQLERIAIPSS--VTKIPESAFS-- 354 (394)
T ss_dssp TTCCEEECCT--TCCEECT-TTTTTC--TTCCEEECCTTCCEECTTTT----TTCTTCCEEEECTT--CCBCCGGGGT--
T ss_pred cccccccCCC--cccccCc-eeecCC--CCcCEEEeCCcccEehHhHh----hCCCCCCEEEECcc--cCEEhHhHhh--
Confidence 6677776643 1221111 112233 66777777541 12222222 25777777777543 2211111111
Q ss_pred cccCCCcCCCCceEEEccCCCCCCHHHHHHhhccCCCCccEEEecC
Q 011710 358 LVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTG 403 (479)
Q Consensus 358 ~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~ 403 (479)
.|++|+.+++.++. .....+. .+.+|+.+.+..
T Consensus 355 -------~C~~L~~i~~~~~~----~~~~~~~--~~~~L~~i~i~~ 387 (394)
T 4gt6_A 355 -------NCTALNNIEYSGSR----SQWNAIS--TDSGLQNLPVAP 387 (394)
T ss_dssp -------TCTTCCEEEESSCH----HHHHTCB--CCCCC-------
T ss_pred -------CCCCCCEEEECCce----eehhhhh--ccCCCCEEEeCC
Confidence 57777777776653 1222232 366777776643
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.26 E-value=0.00013 Score=60.55 Aligned_cols=64 Identities=23% Similarity=0.148 Sum_probs=43.8
Q ss_pred cCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 201 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
.+++|+.|++++ +.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+.
T Consensus 52 ~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 52 RLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 445666666666 3444333333557888999999884 666555556778889999999998664
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.24 E-value=0.00014 Score=60.60 Aligned_cols=64 Identities=22% Similarity=0.206 Sum_probs=42.0
Q ss_pred cCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011710 201 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
.+++|+.|++++ +.++......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+.
T Consensus 55 ~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 55 HLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 345666666665 3444333333457888889988884 566544445778889999999988654
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.16 E-value=0.00014 Score=68.16 Aligned_cols=39 Identities=21% Similarity=0.127 Sum_probs=15.8
Q ss_pred cCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCC
Q 011710 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 265 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 265 (479)
.+++|+.|+|+++ .+.......+..+++|+.|+|++|.+
T Consensus 54 ~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 54 GLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp SCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred cccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 3444444444442 33333333334444444444444433
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.07 E-value=0.00027 Score=66.29 Aligned_cols=102 Identities=22% Similarity=0.179 Sum_probs=65.0
Q ss_pred EEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEec
Q 011710 207 HVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSL 286 (479)
Q Consensus 207 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l 286 (479)
.++.++.+.++..+. +..+++|+.|+|++++.+.......+..+++|+.|+|++|.++......+.. +++|+.|+|
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF--TPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS--CSCCCEEEC
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcC--CcCCCEEeC
Confidence 345554224544333 6678889999998645777666667888999999999999887544333443 888999998
Q ss_pred CCCCCCCHHHHHHHhccCCCCCccEEecCCC
Q 011710 287 RGCKRLTDKCISALFDGTSKLQLQELDLSNL 317 (479)
Q Consensus 287 ~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~ 317 (479)
+++ .++..... .+ ....|+.|+|.++
T Consensus 88 ~~N-~l~~~~~~-~~---~~~~L~~l~l~~N 113 (347)
T 2ifg_A 88 SFN-ALESLSWK-TV---QGLSLQELVLSGN 113 (347)
T ss_dssp CSS-CCSCCCST-TT---CSCCCCEEECCSS
T ss_pred CCC-ccceeCHH-Hc---ccCCceEEEeeCC
Confidence 884 34321100 11 1123778888773
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.96 E-value=0.0022 Score=56.97 Aligned_cols=64 Identities=27% Similarity=0.355 Sum_probs=33.9
Q ss_pred hcCCCccEEEccCCCCCCHHH-H-HHhhcCCCCCEEecCCCCCCChH-HHHhhhcCCCCcEEEccCCCCc
Q 011710 200 ATSLSLTHVCLRWCNLLTNHA-I-KSLASNTGIKVLDLRDCKNLGDE-ALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 200 ~~~~~L~~L~l~~~~~~~~~~-~-~~l~~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
..+++|+.|+|++ +.++... + ..+..+++|+.|+|+++ .+.+. .+..+..+ +|++|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCc
Confidence 3456666666666 3443311 1 12235677777777663 44433 23333333 6777777777665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.66 E-value=0.0026 Score=56.58 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=31.7
Q ss_pred HhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHH-HHHHhhcCCCCCEEecCCC
Q 011710 174 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH-AIKSLASNTGIKVLDLRDC 238 (479)
Q Consensus 174 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~ 238 (479)
..+++|+.|++++|....-.++......+++|+.|+|++ +.+... .+..+..+ +|++|.++++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~N 230 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGN 230 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCC
Confidence 445666666666554322222223334556666666666 344432 22222233 7777777774
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.81 E-value=0.04 Score=51.99 Aligned_cols=128 Identities=10% Similarity=0.083 Sum_probs=66.8
Q ss_pred cCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCC
Q 011710 149 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 228 (479)
Q Consensus 149 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 228 (479)
.+.+|+.+.+... +...+... ...+..|+.+.+... ++..+. .....+.+|+.+.+.. .+...+...+..|+
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~~-f~~~~~L~~i~lp~~--v~~I~~-~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~ 286 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDGA-FYGMKALDEIAIPKN--VTSIGS-FLLQNCTALKTLNFYA--KVKTVPYLLCSGCS 286 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTTT-TTTCSSCCEEEECTT--CCEECT-TTTTTCTTCCEEEECC--CCSEECTTTTTTCT
T ss_pred cccccceeeeccc--eeEEcccc-ccCCccceEEEcCCC--ccEeCc-cccceeehhccccccc--cceecccccccccc
Confidence 3566777666541 22111111 245667777776532 111111 1233556777777654 23333333455777
Q ss_pred CCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCC
Q 011710 229 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 288 (479)
Q Consensus 229 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~ 288 (479)
+|+.+.+.+ ..+...+-..+.+|.+|+.+.|..+ ++..+-.++. .|.+|+.+.+..
T Consensus 287 ~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~--~C~~L~~i~ip~ 342 (379)
T 4h09_A 287 NLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK--NCKALSTISYPK 342 (379)
T ss_dssp TCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCCCCCCT
T ss_pred ccccccccc-cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh--CCCCCCEEEECC
Confidence 888887765 2454445556667778888877653 2222222222 377777777743
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.95 E-value=0.034 Score=52.50 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=79.5
Q ss_pred hhcCCCccEEecccccccccccccccchHHHHHHHHcCCCCCeEEEcCCCccCHHHHHHHHHhCCCCceEEecCCCCCCH
Q 011710 113 INQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTD 192 (479)
Q Consensus 113 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 192 (479)
+..+.+|+.+.+.. ....+....+ ..|++|+.+.+... +...+... ...+.+|+.+.+...- ..
T Consensus 213 f~~~~~l~~i~~~~-------~~~~i~~~~f----~~~~~L~~i~lp~~--v~~I~~~a-F~~~~~l~~i~l~~~i--~~ 276 (379)
T 4h09_A 213 FSYGKNLKKITITS-------GVTTLGDGAF----YGMKALDEIAIPKN--VTSIGSFL-LQNCTALKTLNFYAKV--KT 276 (379)
T ss_dssp TTTCSSCSEEECCT-------TCCEECTTTT----TTCSSCCEEEECTT--CCEECTTT-TTTCTTCCEEEECCCC--SE
T ss_pred cccccccceeeecc-------ceeEEccccc----cCCccceEEEcCCC--ccEeCccc-cceeehhccccccccc--ee
Confidence 44577788877742 1223332222 35778888888652 32221111 2567888888875432 11
Q ss_pred HHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCC
Q 011710 193 LVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS 263 (479)
Q Consensus 193 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 263 (479)
.+. .....|.+|+.+.+.. ..+...+-.++..|.+|+.+.|.. .++..+..++.+|.+|+.+.+..+
T Consensus 277 i~~-~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 277 VPY-LLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ECT-TTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccc-cccccccccccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence 111 1334678899998876 344443444566889999999865 355556667788899999888654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=74.32 E-value=2.2 Score=32.83 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=20.3
Q ss_pred CCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCC
Q 011710 229 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS 263 (479)
Q Consensus 229 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 263 (479)
+|+.|+|++ +.++......+..+++|+.|+|++|
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCC
Confidence 566666666 3455444445556666666666666
No 164
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=74.24 E-value=0.74 Score=38.71 Aligned_cols=17 Identities=35% Similarity=0.726 Sum_probs=12.0
Q ss_pred hHHHHHHHhcCCCCCCC
Q 011710 448 VDELEQWLMEGEDESDN 464 (479)
Q Consensus 448 ~~~l~~~~~~~~~~~~~ 464 (479)
...+-.|+.++|+++++
T Consensus 144 ~~pFI~WL~EAEEEs~e 160 (208)
T 2iu1_A 144 AEPFIKWLKEAEEESSG 160 (208)
T ss_dssp HHHHHHHHHCSSCCCCC
T ss_pred HHHHHHHHHcccccccc
Confidence 45678899888776543
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=69.75 E-value=1.5 Score=33.82 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=19.3
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011710 368 SIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 368 ~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
+|+.|+|++|. ++......+.. +++|+.|+|.+|+
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~--l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDA--LPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGG--CTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhh--ccccCEEEecCCC
Confidence 46666666665 44433333332 5666666666665
No 166
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=42.80 E-value=8.1 Score=31.45 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=9.1
Q ss_pred hHHHHHHHhcCCCCC
Q 011710 448 VDELEQWLMEGEDES 462 (479)
Q Consensus 448 ~~~l~~~~~~~~~~~ 462 (479)
...+-.|+.++|+|+
T Consensus 150 ~~pFI~WL~eAEEEs 164 (177)
T 2ful_A 150 AKPFITWLETAESDD 164 (177)
T ss_dssp THHHHHHHHHCC---
T ss_pred HHHHHHHHHcccccc
Confidence 356888998777655
No 167
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=38.14 E-value=8.9 Score=33.83 Aligned_cols=13 Identities=15% Similarity=0.118 Sum_probs=6.5
Q ss_pred ecCcchHHHHHHH
Q 011710 443 HDYDEVDELEQWL 455 (479)
Q Consensus 443 ~~~~~~~~l~~~~ 455 (479)
+..+.++.++..+
T Consensus 247 iT~~Al~~Lee~l 259 (293)
T 3bbo_G 247 FTEGTIQYLNQRY 259 (293)
T ss_dssp CCTTHHHHHHHHS
T ss_pred EEHHHHHHHHHHh
Confidence 3344555555544
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.33 E-value=16 Score=26.38 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=19.6
Q ss_pred hhcCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccC
Q 011710 224 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDG 262 (479)
Q Consensus 224 l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 262 (479)
+..|.+|+.+.|.. .++..+-.++..|.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 34556666666644 24444444555556666665544
No 169
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=25.32 E-value=27 Score=28.66 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=9.0
Q ss_pred hHHHHHHHhcCCCCC
Q 011710 448 VDELEQWLMEGEDES 462 (479)
Q Consensus 448 ~~~l~~~~~~~~~~~ 462 (479)
...+-.|+.++|+|+
T Consensus 170 ~~~Fi~WL~eAEeEs 184 (189)
T 1paq_A 170 TVKWVEWLQNADEES 184 (189)
T ss_dssp HHHHHHHHHHTC---
T ss_pred HHHHHHHHhccCccc
Confidence 456788998777655
Done!