Query 011711
Match_columns 479
No_of_seqs 870 out of 2530
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:23:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 7.8E-48 1.7E-52 339.1 25.3 320 84-469 109-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 1.3E-43 2.8E-48 312.5 24.6 281 147-474 111-442 (480)
3 KOG0319 WD40-repeat-containing 100.0 1.5E-40 3.3E-45 315.7 25.2 367 87-476 101-582 (775)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-40 4.1E-45 296.3 18.0 276 87-429 172-458 (459)
5 KOG0318 WD40 repeat stress pro 100.0 5.8E-37 1.3E-41 280.9 39.7 381 85-475 54-564 (603)
6 KOG0272 U4/U6 small nuclear ri 100.0 2.7E-39 5.9E-44 288.8 23.1 269 154-469 180-458 (459)
7 KOG0273 Beta-transducin family 100.0 6.1E-38 1.3E-42 283.8 29.0 327 87-471 175-523 (524)
8 KOG0281 Beta-TrCP (transducin 100.0 3.3E-39 7.2E-44 281.4 17.1 276 151-476 197-482 (499)
9 KOG0286 G-protein beta subunit 100.0 1.3E-36 2.9E-41 259.6 32.2 279 183-469 46-343 (343)
10 KOG0291 WD40-repeat-containing 100.0 7.9E-36 1.7E-40 284.1 38.9 384 59-474 117-553 (893)
11 KOG0291 WD40-repeat-containing 100.0 5.9E-34 1.3E-38 271.4 38.0 365 88-473 94-510 (893)
12 KOG0279 G protein beta subunit 100.0 8.3E-35 1.8E-39 247.2 26.9 290 84-431 9-313 (315)
13 KOG0265 U5 snRNP-specific prot 100.0 5.2E-35 1.1E-39 250.8 23.9 289 79-470 36-337 (338)
14 KOG0319 WD40-repeat-containing 100.0 1.4E-34 3E-39 275.3 29.3 380 85-472 187-620 (775)
15 KOG0279 G protein beta subunit 100.0 8.5E-34 1.8E-38 241.1 31.0 265 160-472 27-314 (315)
16 KOG0284 Polyadenylation factor 100.0 1.2E-36 2.6E-41 270.7 14.0 240 186-472 132-381 (464)
17 KOG0274 Cdc4 and related F-box 100.0 2.3E-34 4.9E-39 282.4 30.5 308 150-469 207-520 (537)
18 KOG0285 Pleiotropic regulator 100.0 4E-34 8.6E-39 250.7 25.9 284 142-475 142-443 (460)
19 KOG0286 G-protein beta subunit 100.0 4.7E-33 1E-37 238.0 31.5 282 137-429 41-343 (343)
20 KOG0293 WD40 repeat-containing 100.0 7.5E-35 1.6E-39 259.6 21.3 287 85-473 219-515 (519)
21 KOG0645 WD40 repeat protein [G 100.0 1.3E-33 2.9E-38 238.9 24.9 290 85-431 9-311 (312)
22 KOG0281 Beta-TrCP (transducin 100.0 1.5E-35 3.3E-40 258.6 12.9 276 91-436 198-482 (499)
23 KOG0315 G-protein beta subunit 100.0 5.7E-33 1.2E-37 232.2 26.7 283 101-403 9-307 (311)
24 KOG0645 WD40 repeat protein [G 100.0 8.4E-32 1.8E-36 228.0 32.8 278 146-471 9-311 (312)
25 KOG0315 G-protein beta subunit 100.0 1.9E-32 4.1E-37 229.2 28.3 265 204-475 10-292 (311)
26 KOG0295 WD40 repeat-containing 100.0 1E-33 2.2E-38 248.8 21.7 281 86-430 104-405 (406)
27 KOG0285 Pleiotropic regulator 100.0 1.2E-33 2.7E-38 247.6 22.2 247 181-475 140-393 (460)
28 KOG0263 Transcription initiati 100.0 2.9E-33 6.3E-38 269.0 24.3 266 91-433 379-651 (707)
29 KOG0282 mRNA splicing factor [ 100.0 9E-34 1.9E-38 257.8 18.2 282 85-469 209-503 (503)
30 KOG0318 WD40 repeat stress pro 100.0 2.3E-31 4.9E-36 244.3 32.5 354 87-471 232-602 (603)
31 KOG0273 Beta-transducin family 100.0 6.6E-32 1.4E-36 244.8 26.6 284 185-474 172-485 (524)
32 KOG0295 WD40 repeat-containing 100.0 1.4E-32 3.1E-37 241.6 21.6 271 152-470 111-405 (406)
33 KOG0316 Conserved WD40 repeat- 100.0 9.7E-32 2.1E-36 223.1 25.2 272 153-469 21-297 (307)
34 PLN00181 protein SPA1-RELATED; 100.0 3.2E-31 7E-36 280.2 35.9 292 84-430 477-792 (793)
35 KOG0296 Angio-associated migra 100.0 7.9E-31 1.7E-35 230.8 31.5 314 145-471 58-398 (399)
36 KOG0278 Serine/threonine kinas 100.0 6E-33 1.3E-37 232.2 17.0 281 87-476 11-302 (334)
37 KOG0306 WD40-repeat-containing 100.0 9.5E-31 2.1E-35 249.5 32.6 386 80-472 97-665 (888)
38 KOG0306 WD40-repeat-containing 100.0 9E-31 2E-35 249.6 31.2 360 88-475 63-584 (888)
39 KOG0266 WD40 repeat-containing 100.0 1.1E-30 2.3E-35 257.5 31.9 271 157-471 167-454 (456)
40 PLN00181 protein SPA1-RELATED; 100.0 1.2E-29 2.7E-34 268.2 40.1 289 170-470 457-792 (793)
41 KOG0316 Conserved WD40 repeat- 100.0 2.3E-31 5E-36 220.9 20.6 283 79-430 3-298 (307)
42 KOG0266 WD40 repeat-containing 100.0 1.3E-30 2.7E-35 257.0 29.0 283 87-431 155-454 (456)
43 cd00200 WD40 WD40 domain, foun 100.0 1.7E-29 3.7E-34 235.0 35.2 275 185-469 2-289 (289)
44 KOG0276 Vesicle coat complex C 100.0 8.1E-31 1.8E-35 245.1 24.7 244 86-388 9-261 (794)
45 KOG0276 Vesicle coat complex C 100.0 1.3E-30 2.9E-35 243.7 25.6 268 153-467 17-295 (794)
46 KOG0263 Transcription initiati 100.0 7.4E-31 1.6E-35 252.5 22.3 270 188-474 374-652 (707)
47 cd00200 WD40 WD40 domain, foun 100.0 1.2E-29 2.6E-34 236.0 29.5 279 84-429 3-289 (289)
48 KOG0296 Angio-associated migra 100.0 9.1E-30 2E-34 224.1 26.6 323 83-431 57-398 (399)
49 KOG0274 Cdc4 and related F-box 100.0 2.1E-29 4.6E-34 247.5 28.3 279 89-395 207-493 (537)
50 KOG0283 WD40 repeat-containing 100.0 4.1E-30 8.9E-35 249.4 21.4 294 88-432 265-577 (712)
51 KOG1407 WD40 repeat protein [F 100.0 3.2E-29 6.9E-34 211.3 23.5 282 84-472 14-312 (313)
52 KOG0292 Vesicle coat complex C 100.0 6.4E-29 1.4E-33 240.8 28.5 313 87-473 6-350 (1202)
53 KOG0292 Vesicle coat complex C 100.0 2.6E-29 5.5E-34 243.5 25.6 273 153-473 13-323 (1202)
54 KOG0313 Microtubule binding pr 100.0 6.2E-29 1.3E-33 219.9 25.7 272 161-472 115-419 (423)
55 KOG0313 Microtubule binding pr 100.0 5.9E-29 1.3E-33 220.0 23.3 274 87-384 102-418 (423)
56 KOG0640 mRNA cleavage stimulat 100.0 9.7E-30 2.1E-34 219.3 16.9 311 82-471 104-426 (430)
57 KOG0643 Translation initiation 100.0 5.3E-28 1.2E-32 204.6 24.1 285 85-472 5-318 (327)
58 KOG0284 Polyadenylation factor 100.0 2.3E-29 4.9E-34 224.5 14.8 232 192-471 96-337 (464)
59 KOG0265 U5 snRNP-specific prot 100.0 3.6E-28 7.9E-33 208.9 21.3 243 183-472 38-297 (338)
60 KOG0308 Conserved WD40 repeat- 100.0 2.1E-28 4.5E-33 230.2 20.3 323 99-473 34-395 (735)
61 KOG0305 Anaphase promoting com 100.0 2.7E-27 5.8E-32 224.3 27.6 271 158-474 184-464 (484)
62 KOG0973 Histone transcription 100.0 4.2E-28 9.1E-33 241.3 23.0 317 85-474 7-358 (942)
63 KOG0301 Phospholipase A2-activ 100.0 2.1E-27 4.6E-32 225.1 26.6 275 181-473 3-290 (745)
64 KOG0301 Phospholipase A2-activ 100.0 6.6E-28 1.4E-32 228.5 23.1 275 85-431 9-288 (745)
65 KOG0275 Conserved WD40 repeat- 100.0 1.5E-28 3.3E-33 213.1 16.9 280 145-469 209-507 (508)
66 PTZ00421 coronin; Provisional 100.0 2E-26 4.3E-31 226.3 33.9 230 187-454 70-315 (493)
67 KOG1408 WD40 repeat protein [F 100.0 8.2E-27 1.8E-31 221.4 27.7 368 99-472 267-714 (1080)
68 KOG1539 WD repeat protein [Gen 100.0 1.2E-25 2.5E-30 217.4 35.2 351 99-470 121-647 (910)
69 PTZ00420 coronin; Provisional 100.0 1.2E-25 2.5E-30 221.9 35.7 250 166-454 49-318 (568)
70 KOG1446 Histone H3 (Lys4) meth 100.0 4.9E-26 1.1E-30 197.7 28.9 287 82-432 6-304 (311)
71 KOG0300 WD40 repeat-containing 100.0 4.1E-27 8.9E-32 203.7 22.0 299 158-474 157-479 (481)
72 KOG0278 Serine/threonine kinas 100.0 3E-28 6.5E-33 204.1 14.5 241 85-348 54-301 (334)
73 KOG0299 U3 snoRNP-associated p 100.0 2.1E-26 4.6E-31 208.8 24.9 300 85-470 137-455 (479)
74 KOG0288 WD40 repeat protein Ti 100.0 1.6E-27 3.4E-32 213.2 17.1 271 154-469 180-459 (459)
75 KOG0275 Conserved WD40 repeat- 100.0 3.3E-27 7.1E-32 204.9 17.7 248 190-474 211-470 (508)
76 KOG0283 WD40 repeat-containing 100.0 1.3E-26 2.8E-31 225.2 23.3 280 184-474 258-579 (712)
77 KOG1446 Histone H3 (Lys4) meth 100.0 1.3E-24 2.8E-29 188.9 33.2 283 183-474 5-306 (311)
78 KOG0277 Peroxisomal targeting 100.0 1.9E-26 4.2E-31 193.8 20.9 254 170-469 37-307 (311)
79 KOG0277 Peroxisomal targeting 100.0 5.9E-27 1.3E-31 196.9 17.2 225 161-430 73-308 (311)
80 KOG0308 Conserved WD40 repeat- 100.0 3.9E-27 8.5E-32 221.7 18.0 270 161-472 37-328 (735)
81 KOG0288 WD40 repeat protein Ti 99.9 5.5E-27 1.2E-31 209.7 17.0 284 77-381 159-458 (459)
82 KOG0282 mRNA splicing factor [ 99.9 2.2E-27 4.8E-32 216.3 14.2 243 183-473 205-464 (503)
83 KOG0310 Conserved WD40 repeat- 99.9 7E-26 1.5E-30 206.9 22.9 271 153-475 30-313 (487)
84 KOG0641 WD40 repeat protein [G 99.9 8E-24 1.7E-28 175.1 32.5 278 152-471 35-349 (350)
85 PTZ00421 coronin; Provisional 99.9 1.7E-24 3.6E-29 212.8 32.8 253 191-474 19-293 (493)
86 KOG0647 mRNA export protein (c 99.9 3.9E-25 8.5E-30 190.4 23.7 277 78-422 19-315 (347)
87 KOG0294 WD40 repeat-containing 99.9 2.4E-25 5.1E-30 192.9 22.3 237 83-346 36-283 (362)
88 KOG0268 Sof1-like rRNA process 99.9 5.7E-26 1.2E-30 200.0 16.6 278 183-474 57-348 (433)
89 KOG0299 U3 snoRNP-associated p 99.9 3.7E-25 8E-30 200.7 21.7 257 185-473 135-412 (479)
90 KOG0772 Uncharacterized conser 99.9 3.2E-25 7E-30 203.5 20.8 301 85-469 162-485 (641)
91 KOG1036 Mitotic spindle checkp 99.9 1.6E-23 3.4E-28 181.3 28.9 274 191-475 12-320 (323)
92 KOG0294 WD40 repeat-containing 99.9 6.5E-24 1.4E-28 184.0 25.7 258 163-473 3-283 (362)
93 KOG0268 Sof1-like rRNA process 99.9 2.7E-25 5.9E-30 195.8 16.3 272 154-439 71-353 (433)
94 KOG0289 mRNA splicing factor [ 99.9 1.1E-23 2.5E-28 189.7 26.3 271 153-470 221-505 (506)
95 KOG1332 Vesicle coat complex C 99.9 1.4E-24 3.1E-29 181.6 18.7 239 154-431 16-286 (299)
96 PTZ00420 coronin; Provisional 99.9 1.1E-22 2.3E-27 201.0 35.1 220 253-474 55-296 (568)
97 KOG1408 WD40 repeat protein [F 99.9 1.8E-23 3.8E-28 198.9 27.4 377 92-476 167-676 (1080)
98 KOG0300 WD40 repeat-containing 99.9 4.2E-24 9E-29 185.2 20.9 249 182-473 138-430 (481)
99 KOG2048 WD40 repeat protein [G 99.9 2.5E-22 5.5E-27 190.5 34.1 268 92-384 27-319 (691)
100 KOG0310 Conserved WD40 repeat- 99.9 3.1E-24 6.7E-29 196.2 20.5 232 192-472 26-269 (487)
101 KOG0293 WD40 repeat-containing 99.9 9E-25 1.9E-29 195.5 16.6 240 85-385 264-514 (519)
102 KOG0647 mRNA export protein (c 99.9 1.2E-23 2.6E-28 181.3 22.6 237 191-473 26-283 (347)
103 KOG0305 Anaphase promoting com 99.9 3.4E-24 7.3E-29 203.3 20.5 253 72-386 196-463 (484)
104 KOG0264 Nucleosome remodeling 99.9 6.2E-24 1.3E-28 192.9 21.0 251 190-471 122-404 (422)
105 KOG0321 WD40 repeat-containing 99.9 7.1E-24 1.5E-28 199.5 21.7 277 163-475 66-395 (720)
106 KOG2106 Uncharacterized conser 99.9 1.7E-21 3.6E-26 178.9 36.4 358 82-468 96-518 (626)
107 KOG0641 WD40 repeat protein [G 99.9 4.7E-22 1E-26 164.7 29.7 270 183-477 24-309 (350)
108 KOG0289 mRNA splicing factor [ 99.9 4.3E-23 9.3E-28 185.9 25.5 274 92-430 221-505 (506)
109 KOG4283 Transcription-coupled 99.9 4E-23 8.6E-28 177.5 23.6 296 87-472 40-366 (397)
110 KOG0264 Nucleosome remodeling 99.9 2.1E-23 4.5E-28 189.4 21.1 243 156-432 132-405 (422)
111 KOG0646 WD40 repeat protein [G 99.9 6.6E-23 1.4E-27 186.6 23.9 254 210-474 13-310 (476)
112 KOG0643 Translation initiation 99.9 1.6E-22 3.5E-27 171.5 24.5 226 187-460 5-250 (327)
113 KOG2106 Uncharacterized conser 99.9 1.4E-21 3.1E-26 179.3 31.9 315 145-475 98-481 (626)
114 KOG1063 RNA polymerase II elon 99.9 1.1E-22 2.4E-27 193.2 25.5 354 85-473 186-650 (764)
115 KOG2096 WD40 repeat protein [G 99.9 1.7E-22 3.6E-27 175.4 23.8 276 185-469 79-400 (420)
116 KOG1332 Vesicle coat complex C 99.9 4.6E-23 1E-27 172.6 18.9 248 187-472 6-287 (299)
117 KOG2048 WD40 repeat protein [G 99.9 2.3E-21 5E-26 184.1 32.6 362 90-472 69-549 (691)
118 KOG0646 WD40 repeat protein [G 99.9 2.2E-22 4.9E-27 183.1 24.3 282 164-453 10-330 (476)
119 KOG1063 RNA polymerase II elon 99.9 1.8E-22 3.9E-27 191.8 24.1 373 86-471 263-699 (764)
120 KOG1407 WD40 repeat protein [F 99.9 1.2E-22 2.6E-27 171.7 20.5 242 186-474 14-264 (313)
121 KOG1036 Mitotic spindle checkp 99.9 4.2E-22 9.2E-27 172.5 24.0 257 153-420 17-293 (323)
122 KOG1273 WD40 repeat protein [G 99.9 3.3E-22 7.1E-27 173.4 23.2 281 153-475 27-326 (405)
123 KOG0640 mRNA cleavage stimulat 99.9 7.7E-23 1.7E-27 176.8 18.5 261 185-473 105-385 (430)
124 KOG1445 Tumor-specific antigen 99.9 4.7E-22 1E-26 187.0 24.7 196 277-474 633-847 (1012)
125 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.3E-20 4.9E-25 175.8 36.6 278 162-452 2-300 (300)
126 KOG2096 WD40 repeat protein [G 99.9 2.9E-22 6.3E-27 174.0 21.0 286 81-382 77-400 (420)
127 KOG1274 WD40 repeat protein [G 99.9 9.5E-22 2.1E-26 192.6 26.9 241 189-472 10-263 (933)
128 KOG2445 Nuclear pore complex c 99.9 5.4E-22 1.2E-26 171.6 20.3 260 87-384 10-318 (361)
129 KOG0639 Transducin-like enhanc 99.9 6.7E-22 1.5E-26 181.3 19.5 269 190-471 417-704 (705)
130 KOG0270 WD40 repeat-containing 99.9 9.2E-22 2E-26 178.1 19.5 232 162-437 193-455 (463)
131 KOG0973 Histone transcription 99.9 5.5E-21 1.2E-25 190.9 24.6 255 191-472 12-313 (942)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.3E-19 7.1E-24 167.9 35.6 264 204-474 1-282 (300)
133 KOG2445 Nuclear pore complex c 99.9 2E-20 4.4E-25 161.9 24.3 245 189-471 10-318 (361)
134 KOG0302 Ribosome Assembly prot 99.9 5.4E-21 1.2E-25 169.7 19.1 251 87-377 148-432 (440)
135 KOG1539 WD repeat protein [Gen 99.9 8.3E-19 1.8E-23 170.4 34.9 357 89-474 75-526 (910)
136 KOG0639 Transducin-like enhanc 99.9 4.2E-21 9E-26 176.1 16.1 276 87-383 416-703 (705)
137 KOG0650 WD40 repeat nucleolar 99.9 5.9E-20 1.3E-24 172.0 24.0 275 183-468 391-732 (733)
138 KOG1274 WD40 repeat protein [G 99.9 1E-19 2.2E-24 178.5 26.6 257 148-454 12-282 (933)
139 KOG4328 WD40 protein [Function 99.9 7.3E-20 1.6E-24 166.4 23.0 280 151-471 186-495 (498)
140 KOG2055 WD40 repeat protein [G 99.9 1.2E-19 2.5E-24 165.2 24.2 274 153-471 217-512 (514)
141 KOG0269 WD40 repeat-containing 99.9 6.4E-21 1.4E-25 183.5 16.9 286 92-432 41-341 (839)
142 KOG0267 Microtubule severing p 99.9 7.1E-22 1.5E-26 188.6 9.9 241 168-462 11-259 (825)
143 KOG0269 WD40 repeat-containing 99.9 1.9E-20 4.1E-25 180.3 19.5 269 194-472 41-341 (839)
144 KOG0267 Microtubule severing p 99.9 1.1E-21 2.4E-26 187.3 10.6 214 161-422 40-259 (825)
145 KOG0270 WD40 repeat-containing 99.9 4.7E-20 1E-24 167.1 19.7 246 203-474 191-452 (463)
146 KOG0302 Ribosome Assembly prot 99.9 7.5E-20 1.6E-24 162.5 20.5 255 186-469 145-436 (440)
147 KOG1034 Transcriptional repres 99.9 6.1E-20 1.3E-24 160.3 19.0 280 188-471 34-383 (385)
148 COG2319 FOG: WD40 repeat [Gene 99.9 3.1E-17 6.7E-22 161.4 40.5 362 85-472 60-443 (466)
149 KOG1034 Transcriptional repres 99.8 5.7E-20 1.2E-24 160.5 17.7 235 161-431 105-383 (385)
150 KOG0650 WD40 repeat nucleolar 99.8 2E-20 4.3E-25 175.2 15.3 291 85-381 395-732 (733)
151 KOG0772 Uncharacterized conser 99.8 7.7E-20 1.7E-24 168.5 18.4 215 260-475 156-398 (641)
152 KOG0321 WD40 repeat-containing 99.8 2.2E-19 4.9E-24 169.4 20.5 312 98-433 60-393 (720)
153 KOG4378 Nuclear protein COP1 [ 99.8 4.8E-19 1E-23 162.5 21.2 256 211-475 9-284 (673)
154 KOG2055 WD40 repeat protein [G 99.8 7E-19 1.5E-23 160.2 18.4 280 91-431 214-512 (514)
155 KOG4328 WD40 protein [Function 99.8 1.4E-18 3.1E-23 158.1 20.2 251 183-474 177-453 (498)
156 KOG0322 G-protein beta subunit 99.8 5.8E-19 1.3E-23 149.8 16.3 280 183-470 5-322 (323)
157 KOG0303 Actin-binding protein 99.8 1.2E-18 2.6E-23 155.8 19.1 230 185-453 74-320 (472)
158 KOG1517 Guanine nucleotide bin 99.8 4.4E-18 9.6E-23 169.1 24.1 286 151-474 1066-1384(1387)
159 KOG4283 Transcription-coupled 99.8 1.9E-18 4.2E-23 148.8 18.1 205 268-477 40-282 (397)
160 KOG0307 Vesicle coat complex C 99.8 3.9E-19 8.4E-24 178.7 15.7 229 162-434 81-330 (1049)
161 KOG0649 WD40 repeat protein [G 99.8 1.6E-17 3.5E-22 139.5 22.6 247 193-472 11-275 (325)
162 KOG1188 WD40 repeat protein [G 99.8 2.6E-18 5.7E-23 151.0 18.4 263 162-432 41-347 (376)
163 KOG2919 Guanine nucleotide-bin 99.8 7.2E-18 1.6E-22 147.1 20.9 274 92-422 51-361 (406)
164 KOG4378 Nuclear protein COP1 [ 99.8 5.4E-18 1.2E-22 155.7 19.2 256 93-405 37-302 (673)
165 KOG0649 WD40 repeat protein [G 99.8 3.2E-17 6.9E-22 137.7 21.2 248 80-341 52-313 (325)
166 KOG0642 Cell-cycle nuclear pro 99.8 2.5E-18 5.4E-23 160.5 15.9 258 186-474 288-564 (577)
167 KOG1538 Uncharacterized conser 99.8 1.7E-17 3.7E-22 157.5 21.4 265 151-472 14-294 (1081)
168 KOG0307 Vesicle coat complex C 99.8 1E-18 2.2E-23 175.7 14.0 242 192-474 64-330 (1049)
169 KOG0303 Actin-binding protein 99.8 2.8E-17 6.1E-22 147.1 21.1 204 266-474 76-297 (472)
170 KOG4227 WD40 repeat protein [G 99.8 2.3E-17 4.9E-22 147.4 19.2 308 72-472 38-388 (609)
171 KOG2919 Guanine nucleotide-bin 99.8 8E-17 1.7E-21 140.7 21.2 263 195-461 52-360 (406)
172 KOG0642 Cell-cycle nuclear pro 99.7 1.4E-17 3.1E-22 155.4 13.8 256 85-357 289-574 (577)
173 KOG1587 Cytoplasmic dynein int 99.7 6.5E-16 1.4E-20 151.4 25.9 265 171-472 222-517 (555)
174 KOG1963 WD40 repeat protein [G 99.7 5.5E-15 1.2E-19 145.3 31.4 387 83-472 50-539 (792)
175 KOG2110 Uncharacterized conser 99.7 1.9E-14 4.2E-19 128.2 31.6 279 192-477 5-336 (391)
176 COG2319 FOG: WD40 repeat [Gene 99.7 1.1E-13 2.4E-18 136.1 40.0 312 153-475 69-404 (466)
177 KOG1007 WD repeat protein TSSC 99.7 2.1E-16 4.5E-21 136.1 17.5 197 184-385 114-362 (370)
178 KOG1240 Protein kinase contain 99.7 1.5E-15 3.3E-20 153.6 25.8 282 183-469 1039-1431(1431)
179 KOG1009 Chromatin assembly com 99.7 3.5E-16 7.6E-21 140.7 19.0 165 192-384 13-195 (434)
180 KOG0322 G-protein beta subunit 99.7 4.9E-16 1.1E-20 132.2 18.1 264 160-430 24-322 (323)
181 KOG1334 WD40 repeat protein [G 99.7 1.5E-16 3.2E-21 146.2 14.3 285 183-471 133-466 (559)
182 KOG1273 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 131.8 20.2 192 274-472 26-227 (405)
183 KOG0644 Uncharacterized conser 99.7 6.4E-17 1.4E-21 157.3 11.4 280 146-476 185-473 (1113)
184 KOG1517 Guanine nucleotide bin 99.7 4.2E-15 9.1E-20 148.3 24.2 202 270-474 1108-1336(1387)
185 KOG1188 WD40 repeat protein [G 99.7 2.1E-15 4.7E-20 132.9 18.1 263 205-470 41-345 (376)
186 KOG1587 Cytoplasmic dynein int 99.7 8.4E-15 1.8E-19 143.7 22.3 250 154-432 247-517 (555)
187 PRK11028 6-phosphogluconolacto 99.7 6.3E-13 1.4E-17 126.9 34.0 262 164-431 5-304 (330)
188 KOG1007 WD repeat protein TSSC 99.7 7.3E-15 1.6E-19 126.6 18.2 270 169-473 38-363 (370)
189 KOG1538 Uncharacterized conser 99.7 6.8E-14 1.5E-18 133.4 26.2 261 92-384 14-293 (1081)
190 KOG0644 Uncharacterized conser 99.7 2.3E-16 4.9E-21 153.5 8.9 277 85-434 185-471 (1113)
191 KOG0290 Conserved WD40 repeat- 99.7 2.8E-14 6E-19 123.2 20.6 241 190-467 94-361 (364)
192 PF02239 Cytochrom_D1: Cytochr 99.6 4.9E-13 1.1E-17 127.6 30.8 301 164-474 9-350 (369)
193 KOG1963 WD40 repeat protein [G 99.6 2.1E-13 4.5E-18 134.4 28.5 303 163-474 29-378 (792)
194 KOG4227 WD40 repeat protein [G 99.6 1.1E-14 2.4E-19 130.4 17.4 255 185-475 49-326 (609)
195 KOG0290 Conserved WD40 repeat- 99.6 9.2E-14 2E-18 120.1 22.2 221 251-475 72-322 (364)
196 KOG2110 Uncharacterized conser 99.6 3.3E-13 7.2E-18 120.5 25.2 222 242-475 16-252 (391)
197 TIGR03300 assembly_YfgL outer 99.6 2.2E-12 4.8E-17 125.5 33.1 295 161-468 65-376 (377)
198 KOG2111 Uncharacterized conser 99.6 4.2E-12 9.1E-17 111.4 30.4 274 194-476 7-327 (346)
199 KOG1310 WD40 repeat protein [G 99.6 9.2E-15 2E-19 136.3 13.6 238 183-475 41-307 (758)
200 KOG1334 WD40 repeat protein [G 99.6 1.7E-14 3.7E-19 132.8 15.0 293 84-433 136-468 (559)
201 KOG1272 WD40-repeat-containing 99.6 6.4E-15 1.4E-19 134.8 11.8 256 194-463 131-401 (545)
202 PRK11028 6-phosphogluconolacto 99.6 8.7E-12 1.9E-16 119.0 34.0 263 207-472 5-305 (330)
203 KOG1009 Chromatin assembly com 99.6 1.9E-13 4E-18 123.4 20.0 174 91-344 14-195 (434)
204 KOG1524 WD40 repeat-containing 99.6 1.1E-13 2.4E-18 128.9 18.7 252 190-468 12-283 (737)
205 KOG0771 Prolactin regulatory e 99.6 4.9E-14 1.1E-18 127.9 16.1 196 153-385 148-355 (398)
206 KOG2321 WD40 repeat protein [G 99.6 8.7E-13 1.9E-17 124.0 24.4 273 190-472 49-344 (703)
207 KOG1445 Tumor-specific antigen 99.6 2.6E-14 5.6E-19 135.4 14.5 231 166-432 598-845 (1012)
208 KOG1409 Uncharacterized conser 99.6 1.2E-13 2.6E-18 122.1 17.4 329 86-472 20-395 (404)
209 KOG1524 WD40 repeat-containing 99.6 7.4E-14 1.6E-18 130.0 16.3 202 162-427 76-282 (737)
210 KOG1240 Protein kinase contain 99.6 6.4E-13 1.4E-17 135.0 24.1 223 160-386 1060-1336(1431)
211 KOG2111 Uncharacterized conser 99.6 2.5E-11 5.3E-16 106.6 29.7 219 163-387 18-259 (346)
212 KOG1523 Actin-related protein 99.5 4.6E-12 1E-16 111.2 21.5 202 150-387 9-239 (361)
213 KOG0771 Prolactin regulatory e 99.5 2.8E-11 6.1E-16 110.2 23.9 187 275-472 148-355 (398)
214 TIGR03300 assembly_YfgL outer 99.5 1.2E-10 2.6E-15 113.4 29.9 250 161-428 105-376 (377)
215 PRK01742 tolB translocation pr 99.5 1.9E-11 4.1E-16 120.6 23.6 221 169-399 182-418 (429)
216 KOG3881 Uncharacterized conser 99.5 1.4E-11 3.1E-16 111.0 20.1 208 154-395 108-331 (412)
217 KOG1523 Actin-related protein 99.5 5.9E-12 1.3E-16 110.5 17.2 201 270-473 9-238 (361)
218 KOG3881 Uncharacterized conser 99.4 2.3E-11 4.9E-16 109.7 20.4 244 191-472 54-321 (412)
219 PRK11138 outer membrane biogen 99.4 1.1E-09 2.4E-14 107.0 31.8 296 161-470 69-393 (394)
220 KOG1272 WD40-repeat-containing 99.4 9.9E-13 2.1E-17 120.7 7.7 216 241-469 139-360 (545)
221 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.2E-08 2.6E-13 95.5 33.8 260 171-441 27-340 (352)
222 KOG1310 WD40 repeat protein [G 99.4 5.7E-12 1.2E-16 118.0 11.3 160 308-471 42-231 (758)
223 KOG0974 WD-repeat protein WDR6 99.3 2E-10 4.4E-15 115.7 22.6 140 161-301 145-290 (967)
224 KOG2321 WD40 repeat protein [G 99.3 7.7E-11 1.7E-15 111.2 18.2 260 94-388 55-347 (703)
225 KOG0974 WD-repeat protein WDR6 99.3 1.3E-10 2.9E-15 116.9 20.7 180 242-432 99-289 (967)
226 KOG2394 WD40 protein DMR-N9 [G 99.3 2.2E-10 4.7E-15 107.4 19.3 183 283-473 187-454 (636)
227 PRK01742 tolB translocation pr 99.3 4E-10 8.7E-15 111.2 22.6 204 252-471 184-401 (429)
228 PRK04922 tolB translocation pr 99.3 1.9E-09 4.2E-14 106.6 26.8 229 170-452 183-432 (433)
229 KOG2139 WD40 repeat protein [G 99.3 7.3E-10 1.6E-14 99.1 20.9 239 192-473 98-385 (445)
230 PRK03629 tolB translocation pr 99.3 3E-09 6.6E-14 104.7 27.8 229 170-453 178-428 (429)
231 KOG4497 Uncharacterized conser 99.3 8.4E-10 1.8E-14 97.5 20.9 329 95-464 13-425 (447)
232 PF02239 Cytochrom_D1: Cytochr 99.3 3.5E-09 7.6E-14 101.3 26.7 275 155-440 42-356 (369)
233 KOG4547 WD40 repeat-containing 99.3 7.2E-10 1.6E-14 105.4 20.3 215 201-432 2-221 (541)
234 KOG2315 Predicted translation 99.3 1.4E-08 3E-13 96.2 28.4 305 154-472 38-391 (566)
235 PRK05137 tolB translocation pr 99.2 7.7E-09 1.7E-13 102.4 27.9 229 170-452 181-432 (435)
236 PRK02889 tolB translocation pr 99.2 6.1E-09 1.3E-13 102.7 26.5 233 170-453 175-425 (427)
237 PRK04922 tolB translocation pr 99.2 9.3E-09 2E-13 101.7 27.0 208 253-473 185-413 (433)
238 KOG2394 WD40 protein DMR-N9 [G 99.2 4.8E-10 1E-14 105.1 16.5 155 192-366 219-384 (636)
239 KOG0280 Uncharacterized conser 99.2 5.3E-09 1.2E-13 91.2 21.4 193 275-474 125-336 (339)
240 PRK03629 tolB translocation pr 99.2 3.2E-08 6.9E-13 97.6 30.0 207 253-472 180-407 (429)
241 KOG1354 Serine/threonine prote 99.2 2.4E-09 5.1E-14 95.3 19.3 235 153-388 29-363 (433)
242 PRK11138 outer membrane biogen 99.2 2.2E-08 4.8E-13 97.9 28.2 254 161-430 120-393 (394)
243 PRK05137 tolB translocation pr 99.2 2.4E-08 5.2E-13 98.9 27.4 209 252-473 182-414 (435)
244 KOG4190 Uncharacterized conser 99.2 1.2E-10 2.5E-15 109.5 10.0 310 62-467 705-1032(1034)
245 COG5354 Uncharacterized protei 99.2 8.9E-08 1.9E-12 89.8 28.5 268 193-474 72-398 (561)
246 KOG4547 WD40 repeat-containing 99.2 4.8E-09 1E-13 99.8 20.4 198 161-385 5-221 (541)
247 KOG1064 RAVE (regulator of V-A 99.2 3.9E-10 8.4E-15 119.1 14.2 210 154-377 2213-2439(2439)
248 KOG1912 WD40 repeat protein [G 99.2 7E-08 1.5E-12 94.7 28.2 101 328-433 439-553 (1062)
249 KOG1409 Uncharacterized conser 99.2 2E-09 4.3E-14 95.8 16.0 249 182-473 14-272 (404)
250 KOG1064 RAVE (regulator of V-A 99.1 6E-10 1.3E-14 117.7 14.4 209 169-392 2188-2406(2439)
251 PRK02889 tolB translocation pr 99.1 8.9E-08 1.9E-12 94.5 28.9 215 242-469 163-399 (427)
252 PF13360 PQQ_2: PQQ-like domai 99.1 8E-08 1.7E-12 87.1 26.5 214 212-438 1-237 (238)
253 KOG2139 WD40 repeat protein [G 99.1 9.3E-09 2E-13 92.2 18.9 187 272-472 99-310 (445)
254 PF13360 PQQ_2: PQQ-like domai 99.1 1.4E-07 3E-12 85.5 27.2 211 170-390 2-236 (238)
255 KOG4497 Uncharacterized conser 99.1 2.6E-08 5.5E-13 88.3 20.6 265 198-472 14-392 (447)
256 TIGR02800 propeller_TolB tol-p 99.1 1.3E-07 2.9E-12 93.4 27.8 210 169-431 168-397 (417)
257 KOG0280 Uncharacterized conser 99.1 1.1E-08 2.4E-13 89.3 17.0 187 283-473 87-286 (339)
258 KOG1354 Serine/threonine prote 99.1 3.4E-08 7.5E-13 88.0 19.5 162 313-476 161-364 (433)
259 KOG2695 WD40 repeat protein [G 99.0 1.1E-09 2.3E-14 97.5 9.2 151 242-394 224-386 (425)
260 PF10282 Lactonase: Lactonase, 99.0 4.4E-06 9.5E-11 80.0 34.8 276 170-450 12-345 (345)
261 TIGR02800 propeller_TolB tol-p 99.0 3.5E-07 7.7E-12 90.4 28.1 197 253-463 171-386 (417)
262 KOG4190 Uncharacterized conser 99.0 1.2E-09 2.6E-14 102.8 9.4 217 184-437 727-954 (1034)
263 PRK00178 tolB translocation pr 99.0 4E-07 8.7E-12 90.3 27.6 228 172-452 180-427 (430)
264 KOG2314 Translation initiation 99.0 1E-07 2.2E-12 90.2 21.3 269 194-471 251-573 (698)
265 PRK04792 tolB translocation pr 99.0 4.3E-07 9.3E-12 90.0 27.3 230 171-453 198-447 (448)
266 KOG2315 Predicted translation 99.0 3.8E-07 8.1E-12 86.7 24.8 323 93-453 37-411 (566)
267 PF08662 eIF2A: Eukaryotic tra 99.0 6.7E-08 1.5E-12 84.0 18.7 128 337-473 38-181 (194)
268 KOG1275 PAB-dependent poly(A) 99.0 7.2E-09 1.6E-13 103.2 13.5 180 280-469 146-340 (1118)
269 PF08662 eIF2A: Eukaryotic tra 99.0 8.5E-08 1.8E-12 83.3 18.3 134 171-352 37-186 (194)
270 PRK00178 tolB translocation pr 98.9 1.8E-06 3.9E-11 85.6 29.6 206 253-471 180-406 (430)
271 TIGR02658 TTQ_MADH_Hv methylam 98.9 6.2E-06 1.3E-10 77.5 30.9 250 214-474 27-333 (352)
272 PF10282 Lactonase: Lactonase, 98.9 2.3E-05 5E-10 75.1 34.6 266 207-473 2-324 (345)
273 KOG2041 WD40 repeat protein [G 98.9 1E-06 2.2E-11 86.0 22.7 347 92-468 16-405 (1189)
274 KOG2041 WD40 repeat protein [G 98.8 3.3E-07 7.3E-12 89.3 19.3 272 153-472 16-338 (1189)
275 KOG0309 Conserved WD40 repeat- 98.8 4.9E-08 1.1E-12 95.3 13.0 277 91-385 25-340 (1081)
276 cd00216 PQQ_DH Dehydrogenases 98.8 8.9E-06 1.9E-10 81.6 29.8 283 161-454 61-449 (488)
277 PF00400 WD40: WD domain, G-be 98.8 1.4E-08 3.1E-13 63.0 6.3 38 183-220 2-39 (39)
278 COG2706 3-carboxymuconate cycl 98.8 4.7E-05 1E-09 69.2 30.7 280 170-451 15-345 (346)
279 KOG4714 Nucleoporin [Nuclear s 98.8 7.6E-08 1.7E-12 82.7 11.8 206 173-382 70-316 (319)
280 KOG1645 RING-finger-containing 98.8 4E-07 8.8E-12 83.1 16.9 255 173-472 175-462 (463)
281 KOG4532 WD40-like repeat conta 98.8 8.5E-07 1.8E-11 76.8 17.8 186 283-475 86-286 (344)
282 KOG0309 Conserved WD40 repeat- 98.8 1.1E-07 2.5E-12 92.8 14.1 273 192-473 24-341 (1081)
283 COG4946 Uncharacterized protei 98.8 2.9E-05 6.2E-10 72.7 29.0 178 201-387 275-480 (668)
284 KOG3914 WD repeat protein WDR4 98.7 2.4E-07 5.3E-12 84.5 13.6 155 195-353 65-232 (390)
285 KOG4532 WD40-like repeat conta 98.7 3.5E-06 7.5E-11 73.1 19.7 193 161-353 84-291 (344)
286 PRK01029 tolB translocation pr 98.7 8.4E-06 1.8E-10 80.2 25.1 213 253-475 166-407 (428)
287 PF04762 IKI3: IKI3 family; I 98.7 3.5E-05 7.6E-10 82.3 31.1 292 162-474 88-459 (928)
288 PRK01029 tolB translocation pr 98.7 2.6E-05 5.6E-10 76.8 26.5 236 171-453 165-425 (428)
289 KOG2695 WD40 repeat protein [G 98.7 1.1E-07 2.3E-12 85.0 8.6 157 285-452 228-402 (425)
290 PRK04792 tolB translocation pr 98.6 2.3E-05 5.1E-10 77.7 25.9 206 253-471 199-425 (448)
291 PLN02919 haloacid dehalogenase 98.6 5.9E-05 1.3E-09 82.2 30.5 225 243-475 580-892 (1057)
292 KOG3914 WD repeat protein WDR4 98.6 2.6E-07 5.6E-12 84.4 10.4 158 94-303 66-227 (390)
293 KOG1275 PAB-dependent poly(A) 98.6 5.4E-07 1.2E-11 90.3 13.4 177 244-429 149-340 (1118)
294 KOG4714 Nucleoporin [Nuclear s 98.6 3.6E-07 7.9E-12 78.6 10.5 195 274-472 39-255 (319)
295 PLN02919 haloacid dehalogenase 98.6 0.00012 2.6E-09 79.8 32.2 237 196-435 571-892 (1057)
296 KOG1912 WD40 repeat protein [G 98.6 1E-05 2.2E-10 80.0 20.6 237 193-474 16-307 (1062)
297 PF15492 Nbas_N: Neuroblastoma 98.6 5.5E-05 1.2E-09 66.8 23.1 234 162-441 9-269 (282)
298 KOG2066 Vacuolar assembly/sort 98.6 1.1E-05 2.3E-10 80.3 20.0 178 154-384 42-233 (846)
299 cd00216 PQQ_DH Dehydrogenases 98.5 0.00011 2.5E-09 73.7 27.9 256 204-474 61-427 (488)
300 PF06433 Me-amine-dh_H: Methyl 98.5 0.00088 1.9E-08 61.8 32.4 265 171-443 17-332 (342)
301 COG5354 Uncharacterized protei 98.5 0.0002 4.3E-09 67.9 25.6 277 183-472 23-349 (561)
302 KOG0882 Cyclophilin-related pe 98.5 9.4E-07 2E-11 81.8 9.9 198 156-353 15-240 (558)
303 PF15492 Nbas_N: Neuroblastoma 98.5 0.00022 4.7E-09 63.1 23.7 191 268-473 40-261 (282)
304 PF04762 IKI3: IKI3 family; I 98.4 0.00074 1.6E-08 72.4 31.9 271 191-471 74-379 (928)
305 KOG2314 Translation initiation 98.4 0.00015 3.2E-09 69.4 22.9 266 195-472 213-526 (698)
306 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.0014 3E-08 57.2 28.1 295 161-472 23-352 (354)
307 COG5170 CDC55 Serine/threonine 98.4 1.1E-05 2.3E-10 71.5 13.2 207 270-476 25-314 (460)
308 PF08596 Lgl_C: Lethal giant l 98.3 0.00012 2.6E-09 70.6 21.5 268 194-471 3-335 (395)
309 PF00780 CNH: CNH domain; Int 98.3 0.00068 1.5E-08 62.8 25.8 230 156-394 2-265 (275)
310 PF08450 SGL: SMP-30/Gluconola 98.3 0.0027 5.8E-08 57.7 28.9 204 154-365 4-233 (246)
311 COG5170 CDC55 Serine/threonine 98.3 2.9E-05 6.2E-10 68.9 14.4 235 191-429 25-365 (460)
312 PRK04043 tolB translocation pr 98.3 0.0015 3.3E-08 64.0 27.4 189 194-433 189-402 (419)
313 COG4946 Uncharacterized protei 98.3 0.0019 4.1E-08 60.9 25.9 202 239-454 274-500 (668)
314 KOG2066 Vacuolar assembly/sort 98.2 3.1E-05 6.7E-10 77.2 14.8 183 271-473 39-235 (846)
315 KOG3621 WD40 repeat-containing 98.2 0.00016 3.5E-09 71.3 19.1 161 152-345 36-198 (726)
316 COG2706 3-carboxymuconate cycl 98.2 0.0045 9.7E-08 56.7 30.8 260 213-474 15-324 (346)
317 KOG3621 WD40 repeat-containing 98.2 0.00014 3.1E-09 71.6 18.4 295 71-386 11-355 (726)
318 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0043 9.4E-08 62.7 29.6 184 204-389 69-338 (527)
319 KOG2114 Vacuolar assembly/sort 98.2 0.00063 1.4E-08 68.7 22.8 212 153-392 27-251 (933)
320 PF11768 DUF3312: Protein of u 98.2 0.0034 7.3E-08 61.3 26.5 92 379-473 239-331 (545)
321 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0034 7.3E-08 54.9 23.7 261 160-433 62-353 (354)
322 PF08450 SGL: SMP-30/Gluconola 98.1 0.006 1.3E-07 55.4 28.0 211 197-419 4-244 (246)
323 PF00400 WD40: WD domain, G-be 98.1 9.6E-06 2.1E-10 50.0 5.9 35 308-342 3-39 (39)
324 PRK04043 tolB translocation pr 98.1 0.0067 1.4E-07 59.6 28.7 202 253-470 170-397 (419)
325 KOG0882 Cyclophilin-related pe 98.1 2.9E-05 6.3E-10 72.3 10.5 198 270-474 8-234 (558)
326 PF03178 CPSF_A: CPSF A subuni 98.1 0.0029 6.3E-08 60.1 24.5 173 291-468 62-262 (321)
327 KOG1832 HIV-1 Vpr-binding prot 98.0 6.6E-06 1.4E-10 82.5 4.8 186 266-471 1096-1291(1516)
328 PF07433 DUF1513: Protein of u 98.0 0.0077 1.7E-07 55.0 24.0 202 172-378 29-279 (305)
329 KOG1832 HIV-1 Vpr-binding prot 97.9 4.1E-06 8.8E-11 83.9 1.8 212 181-454 1090-1313(1516)
330 PF08596 Lgl_C: Lethal giant l 97.8 0.0077 1.7E-07 58.3 22.9 165 307-472 77-291 (395)
331 KOG2114 Vacuolar assembly/sort 97.8 0.013 2.8E-07 59.6 24.5 201 194-440 27-252 (933)
332 PF03178 CPSF_A: CPSF A subuni 97.8 0.024 5.3E-07 53.7 25.6 207 172-381 3-262 (321)
333 PRK02888 nitrous-oxide reducta 97.8 0.0035 7.6E-08 62.7 19.5 100 366-472 288-405 (635)
334 KOG3617 WD40 and TPR repeat-co 97.8 0.00072 1.6E-08 68.1 14.3 70 153-223 63-132 (1416)
335 smart00320 WD40 WD40 repeats. 97.7 0.00012 2.7E-09 44.0 5.5 38 183-220 3-40 (40)
336 PF11768 DUF3312: Protein of u 97.6 0.016 3.4E-07 56.8 21.3 73 269-348 257-333 (545)
337 KOG1920 IkappaB kinase complex 97.6 0.044 9.4E-07 58.2 25.5 183 160-347 79-325 (1265)
338 KOG1920 IkappaB kinase complex 97.6 0.028 6E-07 59.6 24.1 225 235-472 70-323 (1265)
339 KOG1645 RING-finger-containing 97.6 0.011 2.4E-07 54.8 19.0 223 154-384 198-461 (463)
340 PF07433 DUF1513: Protein of u 97.6 0.056 1.2E-06 49.6 25.4 225 196-465 8-279 (305)
341 PF00780 CNH: CNH domain; Int 97.6 0.064 1.4E-06 49.6 28.4 225 202-441 5-265 (275)
342 PHA02713 hypothetical protein; 97.6 0.0072 1.6E-07 61.8 19.0 189 278-474 300-536 (557)
343 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.14 3.1E-06 51.9 32.7 181 161-349 69-338 (527)
344 PF04053 Coatomer_WDAD: Coatom 97.5 0.0035 7.5E-08 61.5 14.8 211 94-344 36-262 (443)
345 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.016 3.4E-07 44.3 14.9 102 319-427 2-110 (111)
346 PF08553 VID27: VID27 cytoplas 97.4 0.0032 7E-08 65.2 14.6 136 332-471 500-647 (794)
347 PHA02713 hypothetical protein; 97.3 0.029 6.3E-07 57.4 20.1 213 215-434 273-536 (557)
348 PF04053 Coatomer_WDAD: Coatom 97.3 0.058 1.3E-06 53.0 21.0 218 152-384 35-262 (443)
349 KOG2444 WD40 repeat protein [G 97.3 0.00034 7.4E-09 59.9 4.6 138 329-472 33-178 (238)
350 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.037 8E-07 42.3 14.7 97 195-295 2-110 (111)
351 PF04841 Vps16_N: Vps16, N-ter 97.2 0.28 6E-06 48.2 26.0 191 253-454 62-271 (410)
352 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.23 5E-06 47.8 22.9 143 315-460 182-347 (353)
353 KOG1008 Uncharacterized conser 97.1 0.00036 7.7E-09 68.2 3.1 195 272-476 57-280 (783)
354 KOG4441 Proteins containing BT 97.0 0.043 9.3E-07 56.1 17.5 189 275-471 326-546 (571)
355 PF14583 Pectate_lyase22: Olig 97.0 0.35 7.6E-06 46.0 23.5 267 156-431 42-381 (386)
356 PRK02888 nitrous-oxide reducta 97.0 0.22 4.8E-06 50.3 21.1 201 169-374 213-451 (635)
357 PF08553 VID27: VID27 cytoplas 96.9 0.027 5.9E-07 58.6 15.1 101 282-383 543-646 (794)
358 KOG1008 Uncharacterized conser 96.9 0.00057 1.2E-08 66.8 2.4 163 268-431 99-275 (783)
359 TIGR03074 PQQ_membr_DH membran 96.9 0.36 7.8E-06 51.0 22.9 226 204-440 194-486 (764)
360 PF06433 Me-amine-dh_H: Methyl 96.8 0.41 9E-06 44.6 26.1 250 214-474 17-323 (342)
361 KOG2444 WD40 repeat protein [G 96.8 0.0035 7.6E-08 53.9 6.5 103 280-386 69-179 (238)
362 PF04841 Vps16_N: Vps16, N-ter 96.7 0.66 1.4E-05 45.5 27.2 181 172-367 62-270 (410)
363 KOG2079 Vacuolar assembly/sort 96.7 0.011 2.4E-07 61.6 9.8 109 269-383 87-202 (1206)
364 KOG4441 Proteins containing BT 96.7 0.25 5.5E-06 50.6 19.7 211 171-386 301-548 (571)
365 KOG4499 Ca2+-binding protein R 96.7 0.39 8.5E-06 41.8 19.2 196 169-367 35-264 (310)
366 PF05096 Glu_cyclase_2: Glutam 96.5 0.56 1.2E-05 42.2 21.1 166 183-353 34-212 (264)
367 PF05096 Glu_cyclase_2: Glutam 96.5 0.64 1.4E-05 41.8 23.1 184 272-461 45-251 (264)
368 KOG4640 Anaphase-promoting com 96.4 0.017 3.6E-07 56.9 9.0 74 154-229 25-99 (665)
369 PF05694 SBP56: 56kDa selenium 96.4 0.47 1E-05 45.6 18.2 195 283-478 89-349 (461)
370 COG5276 Uncharacterized conser 96.4 0.68 1.5E-05 41.8 25.0 199 187-388 36-245 (370)
371 COG5276 Uncharacterized conser 96.4 0.71 1.5E-05 41.7 25.7 199 269-476 84-290 (370)
372 COG3386 Gluconolactonase [Carb 96.4 0.87 1.9E-05 42.5 23.3 195 166-366 42-264 (307)
373 PF14727 PHTB1_N: PTHB1 N-term 96.4 1.1 2.4E-05 43.7 32.3 259 203-475 36-364 (418)
374 KOG2395 Protein involved in va 96.3 0.07 1.5E-06 51.7 12.2 140 328-471 348-500 (644)
375 KOG2079 Vacuolar assembly/sort 96.3 0.072 1.6E-06 55.9 13.0 74 160-233 98-171 (1206)
376 smart00320 WD40 WD40 repeats. 96.3 0.014 3E-07 34.4 5.3 35 348-382 4-40 (40)
377 PF06977 SdiA-regulated: SdiA- 96.2 0.88 1.9E-05 41.0 23.2 212 186-468 15-247 (248)
378 PF12894 Apc4_WD40: Anaphase-p 96.2 0.018 4E-07 36.6 5.3 34 192-226 11-44 (47)
379 KOG4640 Anaphase-promoting com 96.2 0.015 3.2E-07 57.3 7.0 68 406-475 26-96 (665)
380 TIGR03074 PQQ_membr_DH membran 96.1 2.3 5E-05 45.1 25.0 112 238-354 190-354 (764)
381 PF14781 BBS2_N: Ciliary BBSom 96.0 0.32 7E-06 38.5 12.3 103 198-300 4-126 (136)
382 KOG3617 WD40 and TPR repeat-co 95.9 0.073 1.6E-06 54.4 10.6 67 274-345 62-132 (1416)
383 PHA03098 kelch-like protein; P 95.9 0.5 1.1E-05 48.4 17.4 184 280-472 294-512 (534)
384 PHA03098 kelch-like protein; P 95.8 1.1 2.5E-05 45.8 19.4 148 278-433 340-513 (534)
385 PF12894 Apc4_WD40: Anaphase-p 95.8 0.031 6.7E-07 35.6 5.0 30 442-471 11-41 (47)
386 PHA02790 Kelch-like protein; P 95.8 0.84 1.8E-05 46.0 17.9 177 203-385 271-471 (480)
387 KOG1897 Damage-specific DNA bi 95.7 3.3 7.2E-05 43.8 27.3 252 205-468 685-1001(1096)
388 PF02897 Peptidase_S9_N: Proly 95.6 2.6 5.6E-05 41.5 30.5 240 194-436 125-409 (414)
389 PF02897 Peptidase_S9_N: Proly 95.6 2.6 5.7E-05 41.5 28.0 230 155-388 129-408 (414)
390 COG0823 TolB Periplasmic compo 95.6 1.7 3.7E-05 42.7 18.6 192 253-454 174-381 (425)
391 smart00356 ZnF_C3H1 zinc finge 95.4 0.01 2.2E-07 32.8 1.6 23 57-79 3-26 (27)
392 PRK13616 lipoprotein LpqB; Pro 95.4 1.2 2.5E-05 45.9 17.3 132 169-340 428-564 (591)
393 COG1520 FOG: WD40-like repeat 95.3 3 6.5E-05 40.4 22.4 215 161-384 68-305 (370)
394 COG0823 TolB Periplasmic compo 95.2 1.1 2.3E-05 44.2 15.8 132 336-473 218-360 (425)
395 KOG2395 Protein involved in va 95.0 0.61 1.3E-05 45.5 12.9 137 202-344 343-500 (644)
396 PHA02790 Kelch-like protein; P 94.9 2.9 6.2E-05 42.1 18.6 128 253-386 288-425 (480)
397 KOG1897 Damage-specific DNA bi 94.7 7.1 0.00015 41.5 30.4 299 163-473 271-615 (1096)
398 PF14727 PHTB1_N: PTHB1 N-term 94.7 2.8 6E-05 40.9 16.9 145 326-471 37-204 (418)
399 COG3204 Uncharacterized protei 94.6 3.5 7.7E-05 37.5 21.9 163 188-353 81-271 (316)
400 COG3391 Uncharacterized conser 94.5 5.1 0.00011 39.0 29.9 269 173-453 13-309 (381)
401 COG3823 Glutamine cyclotransfe 94.3 3 6.5E-05 35.9 14.0 150 203-353 55-213 (262)
402 PF14583 Pectate_lyase22: Olig 93.8 6.4 0.00014 37.7 29.7 261 199-472 42-382 (386)
403 PRK13616 lipoprotein LpqB; Pro 93.8 9.3 0.0002 39.5 20.0 184 190-378 347-562 (591)
404 PLN02153 epithiospecifier prot 93.7 6.7 0.00015 37.5 20.4 131 215-348 51-229 (341)
405 COG3490 Uncharacterized protei 93.6 2.3 5E-05 38.4 12.7 201 172-382 92-346 (366)
406 COG3490 Uncharacterized protei 93.6 5.3 0.00011 36.2 14.8 182 154-342 118-346 (366)
407 PF12234 Rav1p_C: RAVE protein 93.1 4.1 8.8E-05 41.9 15.2 101 366-469 41-154 (631)
408 COG3386 Gluconolactonase [Carb 93.0 7.8 0.00017 36.3 24.0 213 199-422 31-277 (307)
409 COG5167 VID27 Protein involved 92.5 2.3 5E-05 41.5 11.8 143 328-472 482-633 (776)
410 COG1520 FOG: WD40-like repeat 92.3 11 0.00025 36.4 28.9 186 205-395 69-279 (370)
411 PLN02193 nitrile-specifier pro 92.2 14 0.0003 37.1 20.1 102 282-387 230-354 (470)
412 COG3823 Glutamine cyclotransfe 92.0 5.1 0.00011 34.5 12.0 176 277-459 51-247 (262)
413 TIGR02276 beta_rpt_yvtn 40-res 91.7 0.84 1.8E-05 27.9 5.7 42 410-451 1-42 (42)
414 PF08728 CRT10: CRT10; InterP 91.7 10 0.00022 39.5 16.1 144 326-471 49-246 (717)
415 TIGR03548 mutarot_permut cycli 91.4 13 0.00028 35.2 20.0 110 320-434 67-197 (323)
416 PF00642 zf-CCCH: Zinc finger 90.7 0.074 1.6E-06 29.3 0.0 24 57-80 2-27 (27)
417 PF15390 DUF4613: Domain of un 90.7 7.6 0.00017 38.9 13.5 149 316-472 19-187 (671)
418 PF10313 DUF2415: Uncharacteri 90.7 1.4 2.9E-05 27.3 5.5 32 193-224 1-35 (43)
419 PF12234 Rav1p_C: RAVE protein 90.3 6.1 0.00013 40.6 13.0 59 163-222 43-104 (631)
420 KOG1898 Splicing factor 3b, su 90.1 22 0.00048 38.3 16.9 169 172-343 854-1047(1205)
421 PLN02153 epithiospecifier prot 89.8 19 0.00041 34.4 23.0 107 277-387 82-228 (341)
422 PF00930 DPPIV_N: Dipeptidyl p 89.4 21 0.00045 34.3 24.8 242 171-421 23-348 (353)
423 PF07569 Hira: TUP1-like enhan 89.4 2.4 5.2E-05 37.5 8.5 60 410-471 20-95 (219)
424 PF06977 SdiA-regulated: SdiA- 89.2 17 0.00036 32.9 20.1 197 153-380 25-246 (248)
425 PF02333 Phytase: Phytase; In 89.1 22 0.00048 34.2 18.0 143 326-471 68-237 (381)
426 KOG3522 Predicted guanine nucl 89.1 13 0.00029 38.8 14.2 114 271-385 581-698 (925)
427 PF14655 RAB3GAP2_N: Rab3 GTPa 89.1 10 0.00023 37.0 13.1 48 184-231 299-346 (415)
428 PF14781 BBS2_N: Ciliary BBSom 89.0 10 0.00022 30.2 11.3 83 368-451 12-101 (136)
429 PLN00033 photosystem II stabil 88.7 25 0.00055 34.3 17.8 144 195-341 241-396 (398)
430 KOG4499 Ca2+-binding protein R 88.3 17 0.00038 32.0 17.2 86 320-405 161-262 (310)
431 COG5167 VID27 Protein involved 88.3 28 0.00061 34.4 15.4 138 283-431 482-632 (776)
432 TIGR03548 mutarot_permut cycli 87.6 26 0.00055 33.2 16.4 111 277-387 69-197 (323)
433 KOG2247 WD40 repeat-containing 87.3 0.23 5E-06 47.9 0.7 225 198-470 40-279 (615)
434 COG3292 Predicted periplasmic 87.2 28 0.00062 34.9 14.6 145 315-467 163-314 (671)
435 PF05694 SBP56: 56kDa selenium 87.2 18 0.00038 35.3 13.0 127 334-460 220-393 (461)
436 PRK10115 protease 2; Provision 87.1 45 0.00097 35.4 27.9 212 167-387 149-397 (686)
437 KOG2280 Vacuolar assembly/sort 86.8 14 0.00031 38.1 12.7 49 254-302 66-115 (829)
438 PF08728 CRT10: CRT10; InterP 86.6 46 0.00099 35.0 18.9 111 319-430 103-245 (717)
439 COG3391 Uncharacterized conser 86.4 34 0.00073 33.3 28.3 186 276-472 78-284 (381)
440 KOG1896 mRNA cleavage and poly 85.8 31 0.00068 37.9 15.0 170 257-428 1014-1210(1366)
441 PF11715 Nup160: Nucleoporin N 85.6 7.9 0.00017 39.8 11.0 75 280-354 157-258 (547)
442 COG3204 Uncharacterized protei 84.9 31 0.00068 31.6 15.3 146 61-222 48-210 (316)
443 PF07569 Hira: TUP1-like enhan 84.8 10 0.00022 33.6 9.8 28 200-227 18-45 (219)
444 TIGR02276 beta_rpt_yvtn 40-res 84.6 6.6 0.00014 23.7 6.3 34 202-235 1-35 (42)
445 PF10313 DUF2415: Uncharacteri 84.2 3.7 7.9E-05 25.4 4.6 30 443-472 1-34 (43)
446 KOG1900 Nuclear pore complex, 84.2 20 0.00043 39.6 13.0 148 169-345 97-273 (1311)
447 PF11715 Nup160: Nucleoporin N 83.6 6.5 0.00014 40.4 9.3 41 193-233 215-259 (547)
448 smart00564 PQQ beta-propeller 83.1 4.7 0.0001 22.9 4.8 27 326-352 6-32 (33)
449 TIGR03118 PEPCTERM_chp_1 conse 83.0 39 0.00085 31.3 21.2 198 154-358 27-293 (336)
450 PF13570 PQQ_3: PQQ-like domai 82.3 5.8 0.00013 24.0 5.2 24 361-384 16-39 (40)
451 KOG4460 Nuclear pore complex, 81.8 54 0.0012 32.7 13.7 121 163-302 54-201 (741)
452 KOG1983 Tomosyn and related SN 81.8 60 0.0013 36.0 15.9 104 193-301 36-146 (993)
453 COG3292 Predicted periplasmic 81.7 62 0.0013 32.7 18.1 264 192-467 164-443 (671)
454 KOG2280 Vacuolar assembly/sort 81.2 75 0.0016 33.2 16.0 191 272-472 44-247 (829)
455 KOG2714 SETA binding protein S 81.0 52 0.0011 31.9 13.0 150 174-349 206-376 (465)
456 KOG1900 Nuclear pore complex, 80.9 32 0.00069 38.2 13.0 134 333-472 96-273 (1311)
457 PF14655 RAB3GAP2_N: Rab3 GTPa 80.6 61 0.0013 31.8 27.1 82 359-440 310-407 (415)
458 KOG2063 Vacuolar assembly/sort 80.5 56 0.0012 35.3 14.5 71 155-226 20-100 (877)
459 PF12768 Rax2: Cortical protei 80.3 45 0.00098 30.8 12.4 57 169-226 14-76 (281)
460 KOG3616 Selective LIM binding 80.0 33 0.00071 35.6 12.0 70 192-261 14-84 (1636)
461 PF01011 PQQ: PQQ enzyme repea 79.4 6.5 0.00014 23.5 4.6 27 328-354 2-28 (38)
462 PRK13684 Ycf48-like protein; P 79.3 59 0.0013 30.9 18.5 174 164-342 146-329 (334)
463 KOG2247 WD40 repeat-containing 79.3 0.21 4.6E-06 48.1 -3.0 133 326-465 46-182 (615)
464 KOG1916 Nuclear protein, conta 79.2 0.45 9.8E-06 49.3 -0.9 57 162-220 196-253 (1283)
465 PF02333 Phytase: Phytase; In 78.7 65 0.0014 31.1 23.1 193 202-432 66-291 (381)
466 KOG1916 Nuclear protein, conta 77.8 3.9 8.4E-05 42.9 5.1 94 290-384 152-265 (1283)
467 KOG3522 Predicted guanine nucl 77.6 22 0.00047 37.4 10.1 182 283-470 549-747 (925)
468 COG4590 ABC-type uncharacteriz 76.6 15 0.00033 35.6 8.3 176 177-388 205-390 (733)
469 KOG3630 Nuclear pore complex, 75.8 59 0.0013 35.7 12.9 98 287-384 120-228 (1405)
470 PF14608 zf-CCCH_2: Zinc finge 75.6 1.6 3.5E-05 21.7 0.9 17 61-79 2-19 (19)
471 KOG1983 Tomosyn and related SN 75.4 1E+02 0.0022 34.4 15.3 220 149-388 35-268 (993)
472 PF10168 Nup88: Nuclear pore c 75.2 1.2E+02 0.0026 32.3 22.1 90 193-301 85-181 (717)
473 PLN02193 nitrile-specifier pro 75.2 96 0.0021 31.2 21.2 100 203-302 228-354 (470)
474 PF08801 Nucleoporin_N: Nup133 74.5 66 0.0014 31.8 12.9 29 444-472 191-220 (422)
475 COG4247 Phy 3-phytase (myo-ino 73.6 69 0.0015 28.8 15.6 148 326-476 67-237 (364)
476 PF12341 DUF3639: Protein of u 73.5 10 0.00022 20.8 3.8 24 273-296 3-26 (27)
477 PRK10115 protease 2; Provision 72.7 1.4E+02 0.003 31.8 29.5 33 193-225 127-164 (686)
478 PF08801 Nucleoporin_N: Nup133 72.5 35 0.00077 33.7 10.4 29 317-345 190-220 (422)
479 smart00564 PQQ beta-propeller 71.5 11 0.00023 21.3 4.0 25 205-229 7-31 (33)
480 PRK14131 N-acetylneuraminic ac 71.3 1E+02 0.0022 29.8 20.1 40 293-335 314-353 (376)
481 PF01011 PQQ: PQQ enzyme repea 70.8 17 0.00036 21.6 4.9 30 206-235 2-31 (38)
482 PF12657 TFIIIC_delta: Transcr 70.3 33 0.00071 29.0 8.4 29 444-472 87-122 (173)
483 PF14761 HPS3_N: Hermansky-Pud 69.6 78 0.0017 27.7 17.3 66 152-219 20-92 (215)
484 TIGR03032 conserved hypothetic 68.7 79 0.0017 29.6 10.6 80 203-282 212-315 (335)
485 PF10433 MMS1_N: Mono-function 68.3 1.4E+02 0.0031 30.3 24.8 243 201-452 219-503 (504)
486 PF14870 PSII_BNR: Photosynthe 68.3 1E+02 0.0023 28.8 30.0 263 192-468 16-301 (302)
487 PF13570 PQQ_3: PQQ-like domai 68.2 14 0.00031 22.2 4.2 25 321-345 16-40 (40)
488 PF14779 BBS1: Ciliary BBSome 67.1 46 0.001 30.1 8.8 65 315-380 175-254 (257)
489 KOG4460 Nuclear pore complex, 67.0 1.4E+02 0.0031 29.9 13.8 24 319-342 106-131 (741)
490 PF15500 Toxin_39: Putative RN 66.7 2.3 5.1E-05 30.3 0.5 19 65-83 24-42 (96)
491 KOG2377 Uncharacterized conser 66.5 1.4E+02 0.003 29.5 17.3 112 190-301 64-187 (657)
492 PF07676 PD40: WD40-like Beta 66.2 24 0.00053 20.9 5.0 29 191-219 7-38 (39)
493 PF14761 HPS3_N: Hermansky-Pud 65.7 40 0.00087 29.5 7.8 56 275-334 21-79 (215)
494 smart00036 CNH Domain found in 64.7 1.2E+02 0.0027 28.3 25.3 220 245-474 15-273 (302)
495 KOG3630 Nuclear pore complex, 64.0 25 0.00054 38.3 7.4 104 370-473 118-230 (1405)
496 KOG0783 Uncharacterized conser 63.7 1.6E+02 0.0035 31.4 12.6 32 271-302 228-259 (1267)
497 PRK14131 N-acetylneuraminic ac 63.6 1.5E+02 0.0032 28.8 23.5 11 292-302 190-200 (376)
498 PF12657 TFIIIC_delta: Transcr 63.4 52 0.0011 27.8 8.3 29 272-300 86-122 (173)
499 PF14870 PSII_BNR: Photosynthe 62.7 1.3E+02 0.0029 28.0 22.5 151 188-341 140-301 (302)
500 TIGR03547 muta_rot_YjhT mutatr 62.7 1.4E+02 0.0031 28.3 22.6 42 291-335 168-210 (346)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.8e-48 Score=339.14 Aligned_cols=320 Identities=23% Similarity=0.395 Sum_probs=281.2
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccC--
Q 011711 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS-- 161 (479)
Q Consensus 84 ~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~-- 161 (479)
..+.||...|.+++|+|+|.+|||||-|-|+|+||+.+..+ ..+..+|..-..|..|..
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-------------------~~t~KgH~~WVlcvawsPDg 169 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-------------------LFTCKGHKNWVLCVAWSPDG 169 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-------------------ceeecCCccEEEEEEECCCc
Confidence 36789999999999999999999999999999998776443 112234455677776654
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeC-----CCCCEEEEEeCCCcEEEEECCCCceEEEEecCCce
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALP-----LRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV 236 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s-----~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~ 236 (479)
..+++|+.||.|++||.+++.+....|.+|+..|++++|. |..++||++|.||+|+|||+..++++..+
T Consensus 170 k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l------ 243 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL------ 243 (480)
T ss_pred chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe------
Confidence 4899999999999999999988899999999999999994 46789999999999999999988877554
Q ss_pred eEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCC
Q 011711 237 GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH 315 (479)
Q Consensus 237 ~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h 315 (479)
.+|...|+|+.|.++ ++++|+.|++|++|+...+. +...+++|
T Consensus 244 -------------------------------sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~-----~~r~lkGH 287 (480)
T KOG0271|consen 244 -------------------------------SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK-----LCRELKGH 287 (480)
T ss_pred -------------------------------ccCccceEEEEEcCCceEEecCCCceEEEEEccchh-----HHHhhccc
Confidence 479999999999966 99999999999999988764 47889999
Q ss_pred CCCeEEEEEc-------------CC-------------------------EEEEEeCCCeEEEEECCC-CcEEEEEeCCC
Q 011711 316 TRPVTCLAVG-------------GK-------------------------RLYSGSMDNTIRVWDLDT-LEAVMTLNGHT 356 (479)
Q Consensus 316 ~~~i~~l~~~-------------~~-------------------------~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~ 356 (479)
...|+.|+.+ ++ .+++|+.|.++.+|+... .+++..+.+|.
T Consensus 288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq 367 (480)
T KOG0271|consen 288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQ 367 (480)
T ss_pred chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchh
Confidence 9999988764 33 499999999999999765 45888999999
Q ss_pred CCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc
Q 011711 357 DAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM 434 (479)
Q Consensus 357 ~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 434 (479)
..|..+.|+ +.++++++.|..|++||.++++.+..+.+|-..+..+++ +.|.+ +|++++.|.++++||+++.+
T Consensus 368 ~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw----saDsR-LlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 368 ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW----SADSR-LLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe----ccCcc-EEEEcCCCceEEEEEeeeee
Confidence 999999988 689999999999999999999999999888887777666 47776 99999999999999999999
Q ss_pred eeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEE
Q 011711 435 ERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWK 469 (479)
Q Consensus 435 ~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~ 469 (479)
....+. |.++|.++.|+||| ++++|+.|..+++|.
T Consensus 443 l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 998888 68999999999999 999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-43 Score=312.50 Aligned_cols=281 Identities=26% Similarity=0.342 Sum_probs=249.7
Q ss_pred eeecCCCeEE--EeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 011711 147 LERTTPKNVC--YHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG 224 (479)
Q Consensus 147 ~~~~~~~~~c--~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~ 224 (479)
+.+|....+| |.+.+..+++|+.|.++|+||+.+. .++++.++|...|.+++|+|||+.||+|+.||+|++||.++|
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 4466666666 4555669999999999999999998 899999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-------EEEEEeCCCcEEEEE
Q 011711 225 QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-------MLFAGAQDGNILVWK 297 (479)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-------~l~~g~~dg~i~iwd 297 (479)
+++.. .+.+|...|++++|.|- +|++++.||.|+|||
T Consensus 190 ~~~g~------------------------------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 190 QQIGR------------------------------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred Ccccc------------------------------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 86632 45689999999999754 899999999999999
Q ss_pred ccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc-----------
Q 011711 298 GIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW----------- 365 (479)
Q Consensus 298 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~----------- 365 (479)
+..+. .+..+.+|+.+|+|+.|. .+++++|+.|++|++|+...|.+...+++|...|+.++.+
T Consensus 234 ~~~~~-----~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~ 308 (480)
T KOG0271|consen 234 TKLGT-----CVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFD 308 (480)
T ss_pred ccCce-----EEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccc
Confidence 98764 478899999999999998 7899999999999999999999999999999999888875
Q ss_pred --CC-------------------------EEEEEeCCCeEEEEEcCCCc-ceEEeccccCccceEEEeeeeCCCCCcEEE
Q 011711 366 --DQ-------------------------YLLSCSLDNTIKVWIMTEEG-NLEVAYTHNEDHGVLALGGLNDPDGNPVLI 417 (479)
Q Consensus 366 --~~-------------------------~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 417 (479)
++ .|++|+.|.++.+|+....+ ++....+|...+..+.+ +||++ +++
T Consensus 309 ~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f----SPd~r-~IA 383 (480)
T KOG0271|consen 309 HTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF----SPDGR-YIA 383 (480)
T ss_pred cccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE----CCCcc-EEE
Confidence 22 49999999999999875543 66677778777766666 59998 999
Q ss_pred EEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 418 CSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 418 s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
+++-|..|++||..+++.+..+. |-..|..++|+.|. +|++|+.|.++++|++.+++
T Consensus 384 SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 384 SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 99999999999999999999998 68999999999999 99999999999999998764
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-40 Score=315.69 Aligned_cols=367 Identities=19% Similarity=0.259 Sum_probs=291.8
Q ss_pred CC-CCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCC--e
Q 011711 87 SN-HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG--N 163 (479)
Q Consensus 87 ~g-h~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~--~ 163 (479)
+. |+.|+.-++|+|.|..+|+|+.||.++|||...... +.+++-+.| ....++|++... .
T Consensus 101 Ka~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~----th~fkG~gG-------------vVssl~F~~~~~~~l 163 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC----THSFKGHGG-------------VVSSLLFHPHWNRWL 163 (775)
T ss_pred hhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE----EEEecCCCc-------------eEEEEEeCCccchhh
Confidence 44 999999999999999999999999999998776543 112111111 224566666555 5
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe--
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-- 241 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-- 241 (479)
+++|+.|+++++||+.+...+++.+..|.+.|++++|++|+..+++++.|..+.|||+.+.+...+++....+.++..
T Consensus 164 L~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~ 243 (775)
T KOG0319|consen 164 LASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLR 243 (775)
T ss_pred eeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEec
Confidence 889999999999999977677999999999999999999999999999999999999976554444433222221111
Q ss_pred --------------------------------------------------------------------------------
Q 011711 242 -------------------------------------------------------------------------------- 241 (479)
Q Consensus 242 -------------------------------------------------------------------------------- 241 (479)
T Consensus 244 ~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~n 323 (775)
T KOG0319|consen 244 EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYN 323 (775)
T ss_pred hhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCc
Confidence
Q ss_pred -----------CCCEE-EEEcCCeEEEEEcCCCceEEecCCCccEEEEE-EcCC-EEEEEeCCCcEEEEEccCCCCCccc
Q 011711 242 -----------EGPWV-FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMV-VANE-MLFAGAQDGNILVWKGIPNTQNPFQ 307 (479)
Q Consensus 242 -----------~~~~l-~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~-~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~ 307 (479)
+..++ ++.+.+.+++|+..+.....+.+|...|.++. ++.. +|++|+.|.++++|.++.+.. ...
T Consensus 324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~-~~~ 402 (775)
T KOG0319|consen 324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS-KSL 402 (775)
T ss_pred hhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc-hhh
Confidence 00112 22344555555555555556778888999998 4444 999999999999999954432 255
Q ss_pred ceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcE-----E----EEEeCCCCCcEEEEEc--CCEEEEEe
Q 011711 308 LAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEA-----V----MTLNGHTDAPMSLLCW--DQYLLSCS 373 (479)
Q Consensus 308 ~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~-----~----~~~~~h~~~v~~~~~~--~~~l~s~s 373 (479)
++....+|...|.+++++ ..+|+++|.|++|++|++...+. + .+...|...|.+++.. ++.+++||
T Consensus 403 ~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S 482 (775)
T KOG0319|consen 403 CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS 482 (775)
T ss_pred hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc
Confidence 667788999999999997 67899999999999999976221 1 1335788889988887 67999999
Q ss_pred CCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECC
Q 011711 374 LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGP 452 (479)
Q Consensus 374 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~ 452 (479)
.|.+.+||+++..+....+.+|...+.++.|+ |..+ +++++|.|++|+||.+.++.++.++. |...|..++|-.
T Consensus 483 qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs----~~dq-~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~ 557 (775)
T KOG0319|consen 483 QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFS----KNDQ-LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR 557 (775)
T ss_pred cccceeeecccCceEEEEeeCCccceEEEEec----cccc-eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee
Confidence 99999999999888889999999988777774 7777 99999999999999999999999999 688999999999
Q ss_pred Cc-eEEEEcCCCcEEEEEeccCCCC
Q 011711 453 DG-LFFTGDGTGMLSVWKILAKPNA 476 (479)
Q Consensus 453 ~g-~l~sg~~dg~v~vw~~~~~~~~ 476 (479)
+| .|++++.||-|++|++++.+..
T Consensus 558 ~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 558 NGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred CCcEEEeccCCCcEEEEeccchhhh
Confidence 99 9999999999999999987653
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-40 Score=296.26 Aligned_cols=276 Identities=24% Similarity=0.338 Sum_probs=244.4
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEE--Eecc--CC
Q 011711 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVC--YHWL--SG 162 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c--~~~~--~~ 162 (479)
.|-..+|....||+|+..+||||-+|.++||+.++- ....++.+|.....+ ++|. ..
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-------------------~~~~~l~gH~~~v~~~~fhP~~~~~ 232 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-------------------NLLQTLRGHTSRVGAAVFHPVDSDL 232 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCc-------------------ceeEEEeccccceeeEEEccCCCcc
Confidence 677789999999999999999999999999954332 223445555555554 5555 23
Q ss_pred eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeC
Q 011711 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
.+++++.||++++|++++. .++..+.+|...|..++|+|+|++|+|++.|.+-++||+.+++.+
T Consensus 233 ~lat~s~Dgtvklw~~~~e-~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El--------------- 296 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQE-TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL--------------- 296 (459)
T ss_pred ceeeeccCCceeeeccCCC-cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhh---------------
Confidence 7899999999999999988 899999999999999999999999999999999999999987654
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeE
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~ 320 (479)
....+|...|.+++|.++ ++++|+.|..-+|||++++.. +..+.+|..+|.
T Consensus 297 ----------------------L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~-----im~L~gH~k~I~ 349 (459)
T KOG0272|consen 297 ----------------------LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC-----IMFLAGHIKEIL 349 (459)
T ss_pred ----------------------HhhcccccccceeEecCCCceeeccCccchhheeecccCcE-----EEEeccccccee
Confidence 234589999999999988 999999999999999999864 788999999999
Q ss_pred EEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceEEeccc
Q 011711 321 CLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395 (479)
Q Consensus 321 ~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (479)
+++|+ |..++||+.|++++|||++..+.+.++.+|.+-|..+.+. |.+|++++.|++++||..++..++..+.+|
T Consensus 350 ~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH 429 (459)
T KOG0272|consen 350 SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH 429 (459)
T ss_pred eEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC
Confidence 99997 8889999999999999999999999999999999999987 689999999999999999999999999999
Q ss_pred cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 011711 396 NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (479)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd 429 (479)
...+.++.+ ++++. .+++++.|.++++|.
T Consensus 430 e~kV~s~Di----s~d~~-~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 430 EGKVISLDI----SPDSQ-AIATSSFDRTIKLWR 458 (459)
T ss_pred ccceEEEEe----ccCCc-eEEEeccCceeeecc
Confidence 998766666 48988 899999999999995
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.8e-37 Score=280.90 Aligned_cols=381 Identities=18% Similarity=0.245 Sum_probs=295.9
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCC------CCCCCccccccCcCC------------------
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRT------VPNKSSLDCSTGSDD------------------ 140 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~------~~~~~~~~~~~~~~~------------------ 140 (479)
.+.+|..+++-.++||.|.|+|||...|++|||+....... .-.+.-.+++|..+.
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~ 133 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL 133 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence 45889999999999999999999999999999998773221 112222333333321
Q ss_pred ------------------------CCCeeeee----------------------ecC--CCeEEEeccCCeeEeCCCCCe
Q 011711 141 ------------------------SGSKRTLE----------------------RTT--PKNVCYHWLSGNCVKGDECRF 172 (479)
Q Consensus 141 ------------------------~~~~~~~~----------------------~~~--~~~~c~~~~~~~~~~g~~d~~ 172 (479)
.+..++.. .|. ...+-+.+.+..+++.+.||+
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK 213 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence 00111111 111 113445677889999999999
Q ss_pred EEEeecCCCceeeEEEe---cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCc-----eeEEEeCCC
Q 011711 173 WHSWFCGEGFTMLAKLE---GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE-----VGSLICEGP 244 (479)
Q Consensus 173 i~vw~~~~~~~~~~~~~---~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~ 244 (479)
|.+||=.++ +.+..+. +|++.|.+|+|+||++.++|+|.|.+++|||+.+++++.++..+.. +.++-..+.
T Consensus 214 i~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~ 292 (603)
T KOG0318|consen 214 IYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH 292 (603)
T ss_pred EEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence 999999999 7888888 8999999999999999999999999999999999999999987654 445556777
Q ss_pred EEEEEcCCeEEEEEcCCCce-EEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 245 WVFVGMPNVVKAWHIESSAE-FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~~-~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
++.++.+|.|..++...... ....+|...|+++..+++ .|++|+.||.|.-|+..++... ...-+.|...|.+
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~----~~~g~~h~nqI~~ 368 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD----RLAGKGHTNQIKG 368 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc----ccccccccceEEE
Confidence 88899999999999988775 367899999999999988 9999999999999999887542 2223779999999
Q ss_pred EEEcC-CEEEEEeCCCeEEEEECCCCcE-------------------------------EEEEeCC----------CCCc
Q 011711 322 LAVGG-KRLYSGSMDNTIRVWDLDTLEA-------------------------------VMTLNGH----------TDAP 359 (479)
Q Consensus 322 l~~~~-~~l~sgs~dg~I~iwd~~~~~~-------------------------------~~~~~~h----------~~~v 359 (479)
++.++ ..+++.+.|.++++.++..... +..++.+ ....
T Consensus 369 ~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~ 448 (603)
T KOG0318|consen 369 MAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSA 448 (603)
T ss_pred EeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccce
Confidence 99984 8899999999999998742110 0111111 1112
Q ss_pred EEEEEcCCEEEEEeCCCeEEEEEcCCCcce--EEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceee
Q 011711 360 MSLLCWDQYLLSCSLDNTIKVWIMTEEGNL--EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERG 437 (479)
Q Consensus 360 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 437 (479)
.++..+++.++.|+.|+.|++|.+...... .....|..++..+++ +||+. +|+++...+.|.+||..+.+...
T Consensus 449 vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vay----Spd~~-yla~~Da~rkvv~yd~~s~~~~~ 523 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAY----SPDGA-YLAAGDASRKVVLYDVASREVKT 523 (603)
T ss_pred EEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEE----CCCCc-EEEEeccCCcEEEEEcccCceec
Confidence 233333789999999999999999875533 345567777777777 59999 99999999999999999877633
Q ss_pred ee--eccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCCC
Q 011711 438 RI--FSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 438 ~~--~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~ 475 (479)
.. .|...|.+++|+|+. +++||+.|-.|.||+++.+..
T Consensus 524 ~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 524 NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 32 478999999999999 999999999999999987654
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.7e-39 Score=288.83 Aligned_cols=269 Identities=22% Similarity=0.344 Sum_probs=244.8
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCC--CCEEEEEeCCCcEEEEECCCCceEEEEe
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR--SDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~--~~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 231 (479)
.+.+...+..++||+-+|.++||+..+. ..+.+|.||++.|.++.|+|. +..||||+.||++++|++++...+..
T Consensus 180 ~~~fS~ds~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~-- 256 (459)
T KOG0272|consen 180 GCSFSRDSKHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD-- 256 (459)
T ss_pred eeEeecCCCeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh--
Confidence 3345556679999999999999999998 899999999999999999997 56899999999999999987665544
Q ss_pred cCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccce
Q 011711 232 LGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLA 309 (479)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~ 309 (479)
+.+|...|..++|+|+ +|++++.|.+-++||+.++.. .
T Consensus 257 -----------------------------------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-----l 296 (459)
T KOG0272|consen 257 -----------------------------------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-----L 296 (459)
T ss_pred -----------------------------------hhcchhhheeeeecCCCceeeecccccchhhcccccchh-----h
Confidence 4578899999999998 999999999999999999754 5
Q ss_pred eeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCC
Q 011711 310 ALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 310 ~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~ 385 (479)
...++|..+|.+++|+ |.+++||+.|..-+|||+++++++..+.+|...|.++.|+ |..|++|+.|++++|||++.
T Consensus 297 L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 297 LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence 5678999999999996 9999999999999999999999999999999999999998 67899999999999999999
Q ss_pred CcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCC
Q 011711 386 EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTG 463 (479)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg 463 (479)
...+..+..|...+..+.+. |....+|++++.|++++||...+..++..+. |++.|.++.+++|+ .++|++.|.
T Consensus 377 r~~ly~ipAH~nlVS~Vk~~----p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 377 RSELYTIPAHSNLVSQVKYS----PQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred cccceecccccchhhheEec----ccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCc
Confidence 99999999998888888774 7666699999999999999999999999887 48899999999999 999999999
Q ss_pred cEEEEE
Q 011711 464 MLSVWK 469 (479)
Q Consensus 464 ~v~vw~ 469 (479)
++++|.
T Consensus 453 T~KLW~ 458 (459)
T KOG0272|consen 453 TIKLWR 458 (459)
T ss_pred eeeecc
Confidence 999995
No 7
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.1e-38 Score=283.75 Aligned_cols=327 Identities=19% Similarity=0.241 Sum_probs=280.4
Q ss_pred CCCCCCCCCCCCCCCce-eccCCCCCCccccccccCCCCCCCC----CCccccccCcCCCCCeeeeeecCCCeEEEecc-
Q 011711 87 SNHKKSPPSYNCPKNNV-RVSSGSEEGTTHVQNRENPDRTVPN----KSSLDCSTGSDDSGSKRTLERTTPKNVCYHWL- 160 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~-~las~~~dg~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~- 160 (479)
.+|+.+|...+|+|--. .+|+|+.|-+.|+|++......... ..+.+..... .+...+..|..|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s---------~~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKS---------VPSNKDVTSLDWNN 245 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhccc---------CCccCCcceEEecC
Confidence 45999999999999887 9999999999999988762111001 1111111111 1223468899998
Q ss_pred -CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEE
Q 011711 161 -SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239 (479)
Q Consensus 161 -~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~ 239 (479)
+..+++|..||.+++|+..- .++.+|..|+++|.++.|+.+|+||++++.|+++.+||..+|+..+.+..
T Consensus 246 ~G~~LatG~~~G~~riw~~~G--~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~------- 316 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDG--NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF------- 316 (524)
T ss_pred CCCeEEEeecCcEEEEEecCc--hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee-------
Confidence 77999999999999999754 47888999999999999999999999999999999999999988776653
Q ss_pred EeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 240 ~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
|...-..+.|-.+ .+++.+.||.|+++.+.... +..++.+|.++
T Consensus 317 ------------------------------~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~-----P~~t~~GH~g~ 361 (524)
T KOG0273|consen 317 ------------------------------HSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR-----PVKTFIGHHGE 361 (524)
T ss_pred ------------------------------ccCCccceEEecCceEeecCCCceEEEEEecCCC-----cceeeecccCc
Confidence 3444456677655 99999999999999998764 47889999999
Q ss_pred eEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc-----------CCEEEEEeCCCeEEEEEcCC
Q 011711 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-----------DQYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 319 i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-----------~~~l~s~s~dg~i~iwd~~~ 385 (479)
|.+|.|+ +.+|++++.|++++||++........+.+|+..|..+.++ +..+++++.|++|++||+..
T Consensus 362 V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~ 441 (524)
T KOG0273|consen 362 VNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES 441 (524)
T ss_pred eEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence 9999998 9999999999999999999999999999999999998886 25899999999999999999
Q ss_pred CcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCc
Q 011711 386 EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGM 464 (479)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~ 464 (479)
+.++..+..|..++..+++ +|+|+ ++++|+.||.|++|+.++++........+.|..++|+.+| +|..+-.||.
T Consensus 442 gv~i~~f~kH~~pVysvaf----S~~g~-ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 442 GVPIHTLMKHQEPVYSVAF----SPNGR-YLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CceeEeeccCCCceEEEEe----cCCCc-EEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCC
Confidence 9999999999999888877 49998 9999999999999999999999999999999999999999 9999999999
Q ss_pred EEEEEec
Q 011711 465 LSVWKIL 471 (479)
Q Consensus 465 v~vw~~~ 471 (479)
+.+-|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9999874
No 8
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.3e-39 Score=281.38 Aligned_cols=276 Identities=24% Similarity=0.360 Sum_probs=246.5
Q ss_pred CCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 011711 151 TPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (479)
Q Consensus 151 ~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~ 230 (479)
.....|.......+++|..|++|+|||..+- .++..+.||++.|.|+.|. .+.+++||.|.+|+|||+++|+++.++
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~-~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSL-ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccH-HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH
Confidence 4468899999999999999999999999777 8899999999999999985 669999999999999999999988665
Q ss_pred ecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCccccee
Q 011711 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (479)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 310 (479)
- .|...|..+.|+++++++++.|.++.+||+..... ..+..
T Consensus 274 i-------------------------------------hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~--it~rr 314 (499)
T KOG0281|consen 274 I-------------------------------------HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTD--ITLRR 314 (499)
T ss_pred h-------------------------------------hhcceeEEEEEeCCEEEEecCCceeEEEeccCchH--HHHHH
Confidence 3 58888999999999999999999999999987653 55677
Q ss_pred eecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceE
Q 011711 311 LLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLE 390 (479)
Q Consensus 311 ~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (479)
.+.+|...|+.+.|+.+++++++.|.+|++|++.+++++.++.+|...|.|+.+.++++++|+.|.+|++||++.+.++.
T Consensus 315 VLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 394 (499)
T ss_pred HHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee----------eccCceEEEEECCCceEEEEc
Q 011711 391 VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI----------FSRREVRVIETGPDGLFFTGD 460 (479)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----------~~~~~v~~l~~s~~g~l~sg~ 460 (479)
.+.+|.+-+.++.| .+. -+++|+.||+|++||+..+...... .|.+.|..+.|..- .+++++
T Consensus 395 vLeGHEeLvRciRF-----d~k--rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-qIvsss 466 (499)
T KOG0281|consen 395 VLEGHEELVRCIRF-----DNK--RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSS 466 (499)
T ss_pred HHhchHHhhhheee-----cCc--eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-EEEecc
Confidence 99999998888887 333 5899999999999999876543211 24678999999643 899999
Q ss_pred CCCcEEEEEeccCCCC
Q 011711 461 GTGMLSVWKILAKPNA 476 (479)
Q Consensus 461 ~dg~v~vw~~~~~~~~ 476 (479)
.|.+|.|||+.+++..
T Consensus 467 HddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 467 HDDTILIWDFLNGPPS 482 (499)
T ss_pred CCCeEEEEEcCCCCcc
Confidence 9999999999887643
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=259.63 Aligned_cols=279 Identities=20% Similarity=0.340 Sum_probs=244.2
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCce---eEEEeCCCEEEEE-cCCeEEEEE
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV---GSLICEGPWVFVG-MPNVVKAWH 258 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~i~v~~ 258 (479)
+..++|+||.+.|.++.|++|+++|+++|.||.+.|||.-+...++.+++...- .++.|.++++++| .|+...+|+
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 456889999999999999999999999999999999999999999998887652 2455789999876 799999999
Q ss_pred cCCC--c-----eEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CC
Q 011711 259 IESS--A-----EFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GK 327 (479)
Q Consensus 259 ~~~~--~-----~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~ 327 (479)
+.+. + ...+.+|.+.+.++.|.++ .|++++.|.+..+||+++++. ...+.+|.+.|.++++. ++
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~-----~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQ-----TQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceE-----EEEecCCcccEEEEecCCCCCC
Confidence 9855 2 1357899999999999988 999999999999999999864 78899999999999985 78
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEe
Q 011711 328 RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALG 405 (479)
Q Consensus 328 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 405 (479)
.+++|+.|+..++||++.+.++++|.+|...|.++.|. |.-+++|+.|++.++||++..+.+..+...... .-..+
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~--~gitS 278 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII--CGITS 278 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc--CCcee
Confidence 99999999999999999999999999999999999998 789999999999999999998877666543322 22233
Q ss_pred eeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEE
Q 011711 406 GLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWK 469 (479)
Q Consensus 406 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~ 469 (479)
+.++..|+ +|.+|..|..+.+||.-.++....+. |++.|+++..+||| .++||+.|..++||.
T Consensus 279 v~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 34468888 88888999999999998888888887 58899999999999 999999999999994
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.9e-36 Score=284.08 Aligned_cols=384 Identities=18% Similarity=0.255 Sum_probs=312.9
Q ss_pred ceeeeeecCccCC--CCCCcccccCCCCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCcccccc
Q 011711 59 VLCVYFLEGRCNR--NPCRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCST 136 (479)
Q Consensus 59 ~~~~~~~~~~~~~--~p~~~l~~~~p~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 136 (479)
.+-.-|+.+.-.+ ++-=-+|+ ++.||.+.|.++.||.|.+++++||.|-++|||........
T Consensus 117 n~lqiw~~P~~~~~~~~pFvl~r-----~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~----------- 180 (893)
T KOG0291|consen 117 NLLQIWHAPGEIKNEFNPFVLHR-----TYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL----------- 180 (893)
T ss_pred ceeEEEecCcchhcccCcceEee-----eecCCccceeEEEeccCCceEEeccccceEEEEEecccccc-----------
Confidence 4556787766666 22111233 67999999999999999999999999999999976554321
Q ss_pred CcCCCCCeeeeeecCCCeE-EEec-cCCeeEeCCCCCeEEEeecCCC-----------------------ce-----e--
Q 011711 137 GSDDSGSKRTLERTTPKNV-CYHW-LSGNCVKGDECRFWHSWFCGEG-----------------------FT-----M-- 184 (479)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~-c~~~-~~~~~~~g~~d~~i~vw~~~~~-----------------------~~-----~-- 184 (479)
....+.+|....+ |+.- ....+.+-++||.+.+|..... .+ .
T Consensus 181 ------~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~ 254 (893)
T KOG0291|consen 181 ------FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWY 254 (893)
T ss_pred ------ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEE
Confidence 1122334444444 3332 3347899999999999998711 01 0
Q ss_pred ---eEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-CceeEEEe--CCCEEEEEcCC--eEEE
Q 011711 185 ---LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG-AEVGSLIC--EGPWVFVGMPN--VVKA 256 (479)
Q Consensus 185 ---~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~--~~~~l~~~~~~--~i~v 256 (479)
..-+......|++.+|++..+.|++|-..|...++++..-.+++.+... .++..+.. .|.+++.++.+ .+.+
T Consensus 255 k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlV 334 (893)
T KOG0291|consen 255 KTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLV 334 (893)
T ss_pred EEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEE
Confidence 1112223378999999999999999999999999999999999999877 56666665 49999998765 9999
Q ss_pred EEcCCCce-EEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEE
Q 011711 257 WHIESSAE-FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYS 331 (479)
Q Consensus 257 ~~~~~~~~-~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~s 331 (479)
|+.++... +..++|...+.+++++|| ++++|++||+|++||...+- +..++..|+..|+.+.|. ++.+++
T Consensus 335 weWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-----C~vTFteHts~Vt~v~f~~~g~~lls 409 (893)
T KOG0291|consen 335 WEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-----CFVTFTEHTSGVTAVQFTARGNVLLS 409 (893)
T ss_pred EEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-----EEEEeccCCCceEEEEEEecCCEEEE
Confidence 99998765 577899999999999999 99999999999999998864 488899999999999997 999999
Q ss_pred EeCCCeEEEEECCCCcEEEEEeCCCCC-cEEEEEc--CCEEEEEeCCC-eEEEEEcCCCcceEEeccccCccceEEEeee
Q 011711 332 GSMDNTIRVWDLDTLEAVMTLNGHTDA-PMSLLCW--DQYLLSCSLDN-TIKVWIMTEEGNLEVAYTHNEDHGVLALGGL 407 (479)
Q Consensus 332 gs~dg~I~iwd~~~~~~~~~~~~h~~~-v~~~~~~--~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (479)
.+.||+|+.||+...+..+++...... -.+++.+ |..+++|+.|. .|.+|++.+++.+..+.+|..++..+++.
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~-- 487 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS-- 487 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc--
Confidence 999999999999999999999865443 4556665 88888888886 69999999999999999999999888884
Q ss_pred eCCCCCcEEEEEeCCCeEEEeecCCC-ceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 408 NDPDGNPVLICSCNDDSVHLYELPSF-MERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 408 ~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
|.+. .|++++.|.+|++||+-.. .....+.....+..++|+|+| .|+++..||.|.+||.+...
T Consensus 488 --~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 488 --PDGS-LLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred --cccC-eEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 8988 9999999999999998654 455666778899999999999 99999999999999987643
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.9e-34 Score=271.37 Aligned_cols=365 Identities=18% Similarity=0.275 Sum_probs=287.5
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCC--eeE
Q 011711 88 NHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG--NCV 165 (479)
Q Consensus 88 gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~--~~~ 165 (479)
..+.++-++.|||||+++|.|. ..-+.||........ .-.+-..-++..++-.+.++..|..+ .++
T Consensus 94 ~fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~-----------~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~ 161 (893)
T KOG0291|consen 94 NFKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKN-----------EFNPFVLHRTYLGHFDDITSIDWSDDSRLLV 161 (893)
T ss_pred eecCccceEEECCCCcEEEEEe-cceeEEEecCcchhc-----------ccCcceEeeeecCCccceeEEEeccCCceEE
Confidence 3567889999999999999998 788899954432220 11122344566677788999999765 788
Q ss_pred eCCCCCeEEEeecCCCc-eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCC---------------------
Q 011711 166 KGDECRFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT--------------------- 223 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~-~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~--------------------- 223 (479)
+|++|...++|+++... -....+.+|++.|.++-|..+...++|.+.||.+.+|....
T Consensus 162 ~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 162 TGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred eccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 99999999999997552 23667889999999999999999999999999999998761
Q ss_pred --Cce---------EEEEecC---CceeEEEe--CCCEEEEE-cCCeEEEEEcCCCceEE-ecCCCccEEEEEEc--CCE
Q 011711 224 --GQS---------ASVINLG---AEVGSLIC--EGPWVFVG-MPNVVKAWHIESSAEFS-LDGPVGEVYSMVVA--NEM 283 (479)
Q Consensus 224 --~~~---------~~~~~~~---~~~~~~~~--~~~~l~~~-~~~~i~v~~~~~~~~~~-~~~~~~~v~~~~~~--~~~ 283 (479)
++. ....-.. ..+.+..+ ..+.++++ ..|...+|.+.....+. +.-....|..+.++ ++.
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDW 321 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDW 321 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCE
Confidence 110 0001111 22333333 34466666 66778899998887764 34445788999998 678
Q ss_pred EEEEeCC-CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcE
Q 011711 284 LFAGAQD-GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPM 360 (479)
Q Consensus 284 l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~ 360 (479)
|+.|+.. |.+.+|+..+.. .+...++|...+++++++ |+++++|+.||+|++||..++-|..++..|++.|+
T Consensus 322 iA~g~~klgQLlVweWqsEs-----YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt 396 (893)
T KOG0291|consen 322 IAFGCSKLGQLLVWEWQSES-----YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT 396 (893)
T ss_pred EEEcCCccceEEEEEeeccc-----eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE
Confidence 8888765 899999998864 366678999999999997 88999999999999999999999999999999999
Q ss_pred EEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCC-eEEEeecCCCceee
Q 011711 361 SLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD-SVHLYELPSFMERG 437 (479)
Q Consensus 361 ~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~ 437 (479)
.+.+. ++.+++.+.||+|+.||+....+.+.+..... .. ..+...+|.|. ++++|+.|. .|.+|++.+|+++.
T Consensus 397 ~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p-~Q--fscvavD~sGe-lV~AG~~d~F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 397 AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP-IQ--FSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQLLD 472 (893)
T ss_pred EEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc-ee--eeEEEEcCCCC-EEEeeccceEEEEEEEeecCeeee
Confidence 99998 89999999999999999998877766655433 22 22233468888 777777665 59999999999998
Q ss_pred eee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 438 RIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 438 ~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
.+. |+++|.+++|+|++ .|++++.|.+|++|++-..
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 887 58999999999999 9999999999999998665
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-35 Score=247.21 Aligned_cols=290 Identities=20% Similarity=0.263 Sum_probs=238.3
Q ss_pred CCCCCCCCCCCCCCCCCC-ceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeee--eecCCCeEEEecc
Q 011711 84 LPVSNHKKSPPSYNCPKN-NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTL--ERTTPKNVCYHWL 160 (479)
Q Consensus 84 ~~~~gh~~~i~~~~~s~~-g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~c~~~~ 160 (479)
.+++||.+.|++++..++ -..+.+++.|.++-+|++..-.. ..| ...+.+ +.|....+.....
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~----------~~G----~~~r~~~GHsH~v~dv~~s~d 74 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI----------KYG----VPVRRLTGHSHFVSDVVLSSD 74 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc----------ccC----ceeeeeeccceEecceEEccC
Confidence 367899999999999666 56788999999999997665421 011 112222 3344556677788
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 240 (479)
+...++++.|+++++||+.++ +..+.|.||...|.+++|++|.+.++|||.|.+|++||+..+... ++.
T Consensus 75 g~~alS~swD~~lrlWDl~~g-~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-t~~--------- 143 (315)
T KOG0279|consen 75 GNFALSASWDGTLRLWDLATG-ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-TIH--------- 143 (315)
T ss_pred CceEEeccccceEEEEEecCC-cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-EEe---------
Confidence 889999999999999999999 899999999999999999999999999999999999998754332 221
Q ss_pred eCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC----EEEEEeCCCcEEEEEccCCCCCcccceeeecCCC
Q 011711 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (479)
Q Consensus 241 ~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~ 316 (479)
-..+.+.|.++.|+|+ .|++++.|++|++||+++- ++...+.+|+
T Consensus 144 --------------------------~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-----~l~~~~~gh~ 192 (315)
T KOG0279|consen 144 --------------------------EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-----QLRTTFIGHS 192 (315)
T ss_pred --------------------------cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-----chhhcccccc
Confidence 1123778999999987 8999999999999999884 4578889999
Q ss_pred CCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEec
Q 011711 317 RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (479)
Q Consensus 317 ~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (479)
..++.++++ |...++|+.||.+.+||++.++.++++. |...|.+++|. +.+.+....+..|+|||+++...+..+.
T Consensus 193 ~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 193 GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELK 271 (315)
T ss_pred ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcc
Confidence 999999996 9999999999999999999999988876 67889999999 5677777778889999999987766655
Q ss_pred cccCc-----cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC
Q 011711 394 THNED-----HGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 394 ~~~~~-----~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 431 (479)
..... ....++++.|+++|. .|.+|..|+.|++|.+.
T Consensus 272 ~d~~g~s~~~~~~~clslaws~dG~-tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 272 LDGIGPSSKAGDPICLSLAWSADGQ-TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccccCCcEEEEEEEcCCCc-EEEeeecCCcEEEEEee
Confidence 43222 256778888999999 78889999999999874
No 13
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.2e-35 Score=250.84 Aligned_cols=289 Identities=21% Similarity=0.297 Sum_probs=243.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEe
Q 011711 79 TESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYH 158 (479)
Q Consensus 79 ~~~p~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 158 (479)
-+.|...+.||++.|+.++|+|+|.++||||.|-.|-+|+..
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~-------------------------------------- 77 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVY-------------------------------------- 77 (338)
T ss_pred ccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecc--------------------------------------
Confidence 456667789999999999999999999999988888777311
Q ss_pred ccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeE
Q 011711 159 WLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (479)
Q Consensus 159 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~ 238 (479)
..-+-...+++|.++|..+.|.+|++.+++++.|++|+.||.++|++...+.
T Consensus 78 ---------------------gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k------- 129 (338)
T KOG0265|consen 78 ---------------------GDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK------- 129 (338)
T ss_pred ---------------------ccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc-------
Confidence 1113345577999999999999999999999999999999999999887654
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEc---CCEEEEEeCCCcEEEEEccCCCCCcccceeeecCC
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVA---NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH 315 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h 315 (479)
+|...|+++... +.++.+|+.||++++||+++... ++++ ..
T Consensus 130 ------------------------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-----~~t~-~~ 173 (338)
T KOG0265|consen 130 ------------------------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-----IKTF-EN 173 (338)
T ss_pred ------------------------------cccceeeecCccccCCeEEEecCCCceEEEEeecccch-----hhcc-cc
Confidence 566667777643 33899999999999999987542 3332 34
Q ss_pred CCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCC----c
Q 011711 316 TRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE----G 387 (479)
Q Consensus 316 ~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~----~ 387 (479)
+.+++++.|. +..+++|+-|+.|++||++.....+.+.+|.+.|+.+... |.++++-+.|.++++||++.. .
T Consensus 174 kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 174 KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence 6678999996 8899999999999999999999999999999999998877 899999999999999998753 3
Q ss_pred ceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc-eEEEEcCCCcE
Q 011711 388 NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG-LFFTGDGTGML 465 (479)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g-~l~sg~~dg~v 465 (479)
++..+.++......-.+.+.|+|++. .+.+|+.|..+++||..+...+..+.+ .+.|.+++|+|.. .|.+++.|.+|
T Consensus 254 ~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred eEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 46666676666666677778899998 888899999999999999888888874 8899999999999 99999999999
Q ss_pred EEEEe
Q 011711 466 SVWKI 470 (479)
Q Consensus 466 ~vw~~ 470 (479)
.+=++
T Consensus 333 ~lgei 337 (338)
T KOG0265|consen 333 YLGEI 337 (338)
T ss_pred Eeecc
Confidence 87443
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=275.35 Aligned_cols=380 Identities=18% Similarity=0.265 Sum_probs=298.1
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCC--CCCCCc----------------cccccCcCCCCCeee
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRT--VPNKSS----------------LDCSTGSDDSGSKRT 146 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~--~~~~~~----------------~~~~~~~~~~~~~~~ 146 (479)
....|...|+++++++|+.-+.++|.|..+-||++..-... .|--.. .....|.. +..+.
T Consensus 187 ~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~--g~~~~ 264 (775)
T KOG0319|consen 187 TMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGS--GVVQY 264 (775)
T ss_pred HHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCC--ceEEE
Confidence 35789999999999999999999999999999998652211 010000 00000100 00000
Q ss_pred eeecC--------------CCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEe-CCCCCEEEEEe
Q 011711 147 LERTT--------------PKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIAL-PLRSDKLYSGS 211 (479)
Q Consensus 147 ~~~~~--------------~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~-s~~~~~l~s~s 211 (479)
..... ..........+.++.-..|..+.+||.++. ++.+.+-|..+.|.+++| .|+.++|+.++
T Consensus 265 ~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~Dm~~lG~e~~~laVAT 343 (775)
T KOG0319|consen 265 WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEILDMKFLGPEESHLAVAT 343 (775)
T ss_pred EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhheeeeecCCccceEEEEe
Confidence 00000 112222223344555556788999998887 889999999999999999 78889999999
Q ss_pred CCCcEEEEECCCCceEEEEecCCceeEEE--eCCCEEEEE-cCCeEEEEEcCCCceE-----EecCCCccEEEEEEcCC-
Q 011711 212 RDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVG-MPNVVKAWHIESSAEF-----SLDGPVGEVYSMVVANE- 282 (479)
Q Consensus 212 ~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~i~v~~~~~~~~~-----~~~~~~~~v~~~~~~~~- 282 (479)
..+.+|++++.+..+.-...+...+.++. ..|.+++++ .|+++++|.++.+... ...+|...|.+++.+..
T Consensus 344 Ns~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~ 423 (775)
T KOG0319|consen 344 NSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG 423 (775)
T ss_pred CCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC
Confidence 99999999999888874444455566666 466566654 7899999999655432 35689999999998644
Q ss_pred --EEEEEeCCCcEEEEEccCCCCCccccee----eecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeC
Q 011711 283 --MLFAGAQDGNILVWKGIPNTQNPFQLAA----LLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNG 354 (479)
Q Consensus 283 --~l~~g~~dg~i~iwd~~~~~~~~~~~~~----~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 354 (479)
.|++++.|+++++|++.........+.. +...|...|+|++++ ..+++|||+|.+.+||++...+.+.++.+
T Consensus 424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG 503 (775)
T KOG0319|consen 424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG 503 (775)
T ss_pred ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC
Confidence 9999999999999999874332222232 556899999999996 78999999999999999999999999999
Q ss_pred CCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 355 HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 355 h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
|...+.++.|. ++.++++|.|++|+||.+.+..++..+.+|...+-...|. .+|+ .|++++.||.|++|++++
T Consensus 504 H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~----~~~~-qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 504 HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFI----RNGK-QLISAGADGLIKLWNIKT 578 (775)
T ss_pred CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeee----eCCc-EEEeccCCCcEEEEeccc
Confidence 99999999998 5799999999999999999999999999998876655553 6676 788899999999999999
Q ss_pred Cceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 433 FMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 433 ~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
.++...+. |.+.|++++.+|.. .++||+.||.|.+|.=.+
T Consensus 579 ~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 579 NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999997 58899999999999 999999999999997443
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-34 Score=241.08 Aligned_cols=265 Identities=22% Similarity=0.330 Sum_probs=219.7
Q ss_pred cCCeeEeCCCCCeEEEeecCCC----ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCc
Q 011711 160 LSGNCVKGDECRFWHSWFCGEG----FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE 235 (479)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~----~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~ 235 (479)
..+.+++++.|.++.+|++... -.+++.|+||...|..+..++||++.++++.|+++++||+.+++..+.+
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f----- 101 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF----- 101 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-----
Confidence 3568899999999999999643 2568999999999999999999999999999999999999999776554
Q ss_pred eeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeec
Q 011711 236 VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLK 313 (479)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 313 (479)
.+|...|.+++++++ ++++|+.|.+|++|+...... ....-.
T Consensus 102 --------------------------------~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck----~t~~~~ 145 (315)
T KOG0279|consen 102 --------------------------------VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK----YTIHED 145 (315)
T ss_pred --------------------------------EecCCceEEEEecCCCceeecCCCcceeeeeeecccEE----EEEecC
Confidence 479999999999988 999999999999999876532 111122
Q ss_pred CCCCCeEEEEEc----CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCc
Q 011711 314 GHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG 387 (479)
Q Consensus 314 ~h~~~i~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~ 387 (479)
.+.+-|.|+.|+ ..++++++.|++|++||+++.+....+.+|+..++.+.++ |..+++|+.||.+.+||++.++
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 237889999996 5589999999999999999999999999999999988887 8899999999999999999988
Q ss_pred ceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec----------cCceEEEEECCCc-eE
Q 011711 388 NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS----------RREVRVIETGPDG-LF 456 (479)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----------~~~v~~l~~s~~g-~l 456 (479)
.++.+. +...+..++| +|+.- .|+ ...+..|+|||+.+...+..+.. .....+++|++|| .|
T Consensus 226 ~lysl~-a~~~v~sl~f----spnry-wL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 226 NLYSLE-AFDIVNSLCF----SPNRY-WLC-AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred eeEecc-CCCeEeeEEe----cCCce-eEe-eccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 754443 3444444444 57653 454 44677799999999888777653 2235678999999 99
Q ss_pred EEEcCCCcEEEEEecc
Q 011711 457 FTGDGTGMLSVWKILA 472 (479)
Q Consensus 457 ~sg~~dg~v~vw~~~~ 472 (479)
++|-.|+.|++|.+..
T Consensus 299 f~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 299 FAGYTDNVIRVWQVAK 314 (315)
T ss_pred EeeecCCcEEEEEeec
Confidence 9999999999999853
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=270.73 Aligned_cols=240 Identities=20% Similarity=0.323 Sum_probs=210.6
Q ss_pred EEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceE
Q 011711 186 AKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEF 265 (479)
Q Consensus 186 ~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~ 265 (479)
..+++|.++|.++.|++++.+++||+.+|.|++|+..-....
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk-------------------------------------- 173 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK-------------------------------------- 173 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH--------------------------------------
Confidence 346789999999999999999999999999999997643211
Q ss_pred Eec-CCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEE
Q 011711 266 SLD-GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRV 340 (479)
Q Consensus 266 ~~~-~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~i 340 (479)
... .|...|.+++|+++ .+++++.||+|+|||....+. ...+.+|.-.|.|++|+ ..++++|+.|..|++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-----e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-----ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-----hheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence 122 34588999999987 999999999999999887654 45679999999999998 778999999999999
Q ss_pred EECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEE
Q 011711 341 WDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLIC 418 (479)
Q Consensus 341 wd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 418 (479)
||.++++++.++.+|...|+.+.|. +++|+++|.|..++++|+++.+.+..+..|...+..+.+ +|-...++++
T Consensus 249 WDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~W----hP~~~~lfts 324 (464)
T KOG0284|consen 249 WDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTW----HPLNESLFTS 324 (464)
T ss_pred ecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecc----ccccccceee
Confidence 9999999999999999999999998 789999999999999999988888888888888766655 5777779999
Q ss_pred EeCCCeEEEeecCCCceeeeee--ccCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 419 SCNDDSVHLYELPSFMERGRIF--SRREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 419 ~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
|+.||.|..|.+...+++..+. |...|++++|+|=| +|++|+.|.++++|.-..
T Consensus 325 gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 9999999999998777776665 58899999999999 999999999999997543
No 17
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.3e-34 Score=282.45 Aligned_cols=308 Identities=32% Similarity=0.503 Sum_probs=259.4
Q ss_pred cCCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 011711 150 TTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (479)
Q Consensus 150 ~~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~ 229 (479)
+....+|..+..+.+.+|+.|++|++|+..+++.+...+.||.+.|.++++...+.+|++|+.|.++++||+.+|++...
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~ 286 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS 286 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE
Confidence 45568899999999999999999999999999666666999999999999988899999999999999999999999999
Q ss_pred EecCCceeEEEeCCCEEEEE--cCCeEEEEEcCCCceEEecC-CCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcc
Q 011711 230 INLGAEVGSLICEGPWVFVG--MPNVVKAWHIESSAEFSLDG-PVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPF 306 (479)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~--~~~~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 306 (479)
+..+..........+...++ .|.+|++|+++++..+.... |.+.|.++..+.+++++|+.||+|++||+.+.
T Consensus 287 l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~----- 361 (537)
T KOG0274|consen 287 LQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTG----- 361 (537)
T ss_pred ecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhc-----
Confidence 99777666655544444444 99999999999999887665 99999999999999999999999999999964
Q ss_pred cceeeecCCCCCeEEEEEcC-CEEEEEeCCCeEEEEECCCC-cEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcC
Q 011711 307 QLAALLKGHTRPVTCLAVGG-KRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 307 ~~~~~~~~h~~~i~~l~~~~-~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~ 384 (479)
+++..+.+|...|+++.+++ +.+++|+.|++|++||+++. +++.++.+|...+..+.+.+++|++++.|++|++||..
T Consensus 362 ~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 362 KCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred eeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecc
Confidence 56899999999999999998 99999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCcceEEeccc-cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCceEEEEcCCC
Q 011711 385 EEGNLEVAYTH-NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDGLFFTGDGTG 463 (479)
Q Consensus 385 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g~l~sg~~dg 463 (479)
+++++..+... ...+..+.. ++..+++++.|+.+++||+++++....+............+.+..+++...+
T Consensus 442 ~~~~~~~~~~~~~~~v~~l~~-------~~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 514 (537)
T KOG0274|consen 442 EGECLRTLEGRHVGGVSALAL-------GKEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAPSSPSFSTANVE 514 (537)
T ss_pred cCceeeeeccCCcccEEEeec-------CcceEEEEecCCeeEEEecccCchhhhhhhcccccccccccCCCcccccccc
Confidence 99999988884 333333322 1337888999999999999999998877543333333333344344444444
Q ss_pred cEEEEE
Q 011711 464 MLSVWK 469 (479)
Q Consensus 464 ~v~vw~ 469 (479)
....|-
T Consensus 515 ~~~~~~ 520 (537)
T KOG0274|consen 515 AVQSWI 520 (537)
T ss_pred ccccce
Confidence 444443
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4e-34 Score=250.67 Aligned_cols=284 Identities=24% Similarity=0.352 Sum_probs=244.8
Q ss_pred CCeeeeeecCCCeEEEe--ccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEE
Q 011711 142 GSKRTLERTTPKNVCYH--WLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLW 219 (479)
Q Consensus 142 ~~~~~~~~~~~~~~c~~--~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vw 219 (479)
...+++.+|.+-.-|.. +...-+++|+.|++|+|||+.++ ++..++.||...|..+++|+...||++++.|+.|+-|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC-eEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 34477778877766654 45558999999999999999999 8999999999999999999999999999999999999
Q ss_pred ECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEE
Q 011711 220 DCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWK 297 (479)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd 297 (479)
|++..+.++.+ .+|-..|++++.+|. .|++|+.|..+++||
T Consensus 221 DLe~nkvIR~Y-------------------------------------hGHlS~V~~L~lhPTldvl~t~grDst~RvWD 263 (460)
T KOG0285|consen 221 DLEYNKVIRHY-------------------------------------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWD 263 (460)
T ss_pred echhhhhHHHh-------------------------------------ccccceeEEEeccccceeEEecCCcceEEEee
Confidence 99988877655 378899999999977 999999999999999
Q ss_pred ccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEe
Q 011711 298 GIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS 373 (479)
Q Consensus 298 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s 373 (479)
+++... +..+.+|..+|.++.+. ...+++|+.|++|++||++.++...++..|...+.++..+ ...+++++
T Consensus 264 iRtr~~-----V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas 338 (460)
T KOG0285|consen 264 IRTRAS-----VHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS 338 (460)
T ss_pred ecccce-----EEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC
Confidence 999764 78899999999999997 8899999999999999999999999999999999999888 35677777
Q ss_pred CCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee---------eccCc
Q 011711 374 LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI---------FSRRE 444 (479)
Q Consensus 374 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---------~~~~~ 444 (479)
.| .|+-|++..+..+..+..|..-+..+.. +.|| ++++|+.+|.+.+||.+++...... ..+..
T Consensus 339 ~d-nik~w~~p~g~f~~nlsgh~~iintl~~----nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEag 411 (460)
T KOG0285|consen 339 PD-NIKQWKLPEGEFLQNLSGHNAIINTLSV----NSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAG 411 (460)
T ss_pred Cc-cceeccCCccchhhccccccceeeeeee----ccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccc
Confidence 66 5999999999888887777776666655 3554 7999999999999999987554443 23667
Q ss_pred eEEEEECCCc-eEEEEcCCCcEEEEEeccCCC
Q 011711 445 VRVIETGPDG-LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 445 v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~ 475 (479)
|.+.+|...| .|++|..|.+|++|+-.....
T Consensus 412 I~as~fDktg~rlit~eadKtIk~~keDe~aT 443 (460)
T KOG0285|consen 412 IFASCFDKTGSRLITGEADKTIKMYKEDEHAT 443 (460)
T ss_pred eeEEeecccCceEEeccCCcceEEEecccccC
Confidence 9999999999 999999999999998665443
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.7e-33 Score=237.96 Aligned_cols=282 Identities=16% Similarity=0.222 Sum_probs=244.4
Q ss_pred CcCCCCCeeeeeecCCCeEEEeccCC--eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCC
Q 011711 137 GSDDSGSKRTLERTTPKNVCYHWLSG--NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG 214 (479)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~c~~~~~~--~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg 214 (479)
+.......+++.+|..++.|++|..+ ++++++.||.+.|||.-+. ..++.+.-....|..++|+|.|+++|.|+.|.
T Consensus 41 ~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN 119 (343)
T KOG0286|consen 41 GRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN 119 (343)
T ss_pred eeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc-cceeEEecCceeEEEEEECCCCCeEEecCcCc
Confidence 34445667999999999999999765 8999999999999999988 56777888899999999999999999999999
Q ss_pred cEEEEECCCCc------eEEEEecCCc-eeEEE--eCCCEEEEEcCCeEEEEEcCCCceE-EecCCCccEEEEEEcC-C-
Q 011711 215 TVQLWDCHTGQ------SASVINLGAE-VGSLI--CEGPWVFVGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVAN-E- 282 (479)
Q Consensus 215 ~v~vwd~~~~~------~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~-~- 282 (479)
...||++.+.+ ..+.+..+.. +.+.. .++.++.++.|.+..+||+++++.. .+.+|.+.|.++.+.| +
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence 99999998652 2233333332 23322 3777888889999999999999875 5789999999999998 3
Q ss_pred -EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCC--CC
Q 011711 283 -MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH--TD 357 (479)
Q Consensus 283 -~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h--~~ 357 (479)
.+++|+-|+..++||++.+. ..+.+.+|...|+++.|. |.-+++|+.|++.++||++..+.+..+... ..
T Consensus 200 ntFvSg~cD~~aklWD~R~~~-----c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQ-----CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred CeEEecccccceeeeeccCcc-----eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 99999999999999999975 488999999999999995 889999999999999999999998888733 34
Q ss_pred CcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 011711 358 APMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (479)
Q Consensus 358 ~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd 429 (479)
+|++++|+ |++|++|..|.++.+||.-.++....+.+|...+.++.++ |||. .+++|+.|..++||.
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----~DG~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----PDGM-AVATGSWDSTLRIWA 343 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----CCCc-EEEecchhHheeecC
Confidence 58888887 8999999999999999999999999999999999888885 9998 899999999999994
No 20
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-35 Score=259.58 Aligned_cols=287 Identities=18% Similarity=0.228 Sum_probs=237.5
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCee
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 164 (479)
.+..|++.|+-+.||++|+||||+|.|.|.-+|..
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v--------------------------------------------- 253 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIV--------------------------------------------- 253 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEE---------------------------------------------
Confidence 56889999999999999999999999999988831
Q ss_pred EeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCC
Q 011711 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (479)
++|.. +++.+++.+|..+|..|.||||.++|++|+.|..+++||+.+|.....+..
T Consensus 254 ----------~~d~~--~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~------------ 309 (519)
T KOG0293|consen 254 ----------VYDVH--FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS------------ 309 (519)
T ss_pred ----------ecCcc--eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc------------
Confidence 11211 377899999999999999999999999999999999999999998876652
Q ss_pred EEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCC-CCCeEE
Q 011711 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH-TRPVTC 321 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h-~~~i~~ 321 (479)
++...+.+++|.|| .+++|+.|+.+..||++.+.. ...++- ...|.+
T Consensus 310 ------------------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~------~~W~gvr~~~v~d 359 (519)
T KOG0293|consen 310 ------------------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL------GNWEGVRDPKVHD 359 (519)
T ss_pred ------------------------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh------hcccccccceeEE
Confidence 24467889999998 999999999999999987643 223332 245788
Q ss_pred EEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccC
Q 011711 322 LAV--GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE 397 (479)
Q Consensus 322 l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 397 (479)
++. +|+++++...|..|++++..+......+. ...+++++..+ ++++++.-.+..|++||++....+....+|..
T Consensus 360 lait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq 438 (519)
T KOG0293|consen 360 LAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ 438 (519)
T ss_pred EEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc
Confidence 887 49999999999999999998766554444 44567887777 78888888999999999998888888888887
Q ss_pred ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc--eEEEEcCCCcEEEEEeccC
Q 011711 398 DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG--LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~~ 473 (479)
....+..++- -.+. .++++|+.|+.|+||+..+++++..+.+ ...|++++|+|.. ++|++++||+|+||.....
T Consensus 439 ~~fiIrSCFg-g~~~-~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 439 GHFIIRSCFG-GGND-KFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cceEEEeccC-CCCc-ceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 7655544432 2333 4999999999999999999999999975 7889999999988 9999999999999998754
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=238.88 Aligned_cols=290 Identities=22% Similarity=0.287 Sum_probs=229.4
Q ss_pred CCCCCCCCCCCCCCCCC-ceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCe
Q 011711 85 PVSNHKKSPPSYNCPKN-NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~-g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 163 (479)
.++||++.+++++|+|. |..|||+|.|..||||+...+.. ..+..-.+ -.++.....+...|.+..
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-------~~ck~vld------~~hkrsVRsvAwsp~g~~ 75 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-------WTCKTVLD------DGHKRSVRSVAWSPHGRY 75 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-------EEEEEecc------ccchheeeeeeecCCCcE
Confidence 46889999999999999 99999999999999997664221 11111111 013334467788889999
Q ss_pred eEeCCCCCeEEEeecCCC-ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeC
Q 011711 164 CVKGDECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~-~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
+++++-|.++.||.-..+ ++++..++||++.|.+++|+++|++|||++.|++|-||.+..+......
T Consensus 76 La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~------------ 143 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI------------ 143 (312)
T ss_pred EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE------------
Confidence 999999999999998754 8999999999999999999999999999999999999998855433222
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcC--CEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeE
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN--EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~ 320 (479)
-.++.|...|..+.|+| ++|++++.|++|++|+-.... .+++.+++.+|...|.
T Consensus 144 ----------------------aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--dW~c~~tl~g~~~TVW 199 (312)
T KOG0645|consen 144 ----------------------AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--DWECVQTLDGHENTVW 199 (312)
T ss_pred ----------------------eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC--CeeEEEEecCccceEE
Confidence 13567999999999999 499999999999999876432 2788999999999999
Q ss_pred EEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCC--cc-eE----E
Q 011711 321 CLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEE--GN-LE----V 391 (479)
Q Consensus 321 ~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~-~~----~ 391 (479)
+++|+ |..|++++.|++++||-..+.- -..|+..+..+.+.+..|++++.|+.|++|.-... ++ .. .
T Consensus 200 ~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~ 275 (312)
T KOG0645|consen 200 SLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK 275 (312)
T ss_pred EEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhh
Confidence 99997 8899999999999999865321 12366778888888889999999999999976532 11 11 1
Q ss_pred eccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC
Q 011711 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 431 (479)
...|...++.+.. +|.....|++++.||.|++|.+.
T Consensus 276 ~~aHe~dVNsV~w----~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 276 EGAHEVDVNSVQW----NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hcccccccceEEE----cCCCCCceeecCCCceEEEEEec
Confidence 2234445555554 58655689999999999999874
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.5e-35 Score=258.57 Aligned_cols=276 Identities=21% Similarity=0.345 Sum_probs=228.0
Q ss_pred CCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCC
Q 011711 91 KSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDEC 170 (479)
Q Consensus 91 ~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d 170 (479)
+.|+.+.. |...++||..|.||+|||..+-. ..+++.+|.+..+|..+....+++|+.|
T Consensus 198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~~~-------------------c~~~L~GHtGSVLCLqyd~rviisGSSD 256 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLE-------------------CLKILTGHTGSVLCLQYDERVIVSGSSD 256 (499)
T ss_pred CceEEEEe--cchhhhcccccCceEEeccccHH-------------------HHHhhhcCCCcEEeeeccceEEEecCCC
Confidence 34455543 44569999999999999744322 2345567888999999999999999999
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEc
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGM 250 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (479)
.+|+|||++++ +++.++-+|.+.|..+.|+ ..+++|+|.|.++.|||+.+...+...
T Consensus 257 sTvrvWDv~tg-e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~r-------------------- 313 (499)
T KOG0281|consen 257 STVRVWDVNTG-EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLR-------------------- 313 (499)
T ss_pred ceEEEEeccCC-chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHH--------------------
Confidence 99999999999 9999999999999999997 668999999999999998764321100
Q ss_pred CCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEE
Q 011711 251 PNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLY 330 (479)
Q Consensus 251 ~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~ 330 (479)
..+.+|...|+.+.|+..++++++.|.+|++|++.+. +.+.++.+|...|.|+.+.+.+++
T Consensus 314 --------------rVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~-----efvRtl~gHkRGIAClQYr~rlvV 374 (499)
T KOG0281|consen 314 --------------RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTC-----EFVRTLNGHKRGIACLQYRDRLVV 374 (499)
T ss_pred --------------HHHhhhhhheeeeccccceEEEecCCceEEEEeccce-----eeehhhhcccccceehhccCeEEE
Confidence 1245899999999999999999999999999999885 458899999999999999999999
Q ss_pred EEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcce---------EEeccccCccce
Q 011711 331 SGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNL---------EVAYTHNEDHGV 401 (479)
Q Consensus 331 sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~ 401 (479)
+|+.|.+|++||+..|.++..+++|+.-|.++.|+++.+++|+.||+|++||+...... ..+..|.+.
T Consensus 375 SGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgR--- 451 (499)
T KOG0281|consen 375 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGR--- 451 (499)
T ss_pred ecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccce---
Confidence 99999999999999999999999999999999999999999999999999999766432 222223333
Q ss_pred EEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCcee
Q 011711 402 LALGGLNDPDGNPVLICSCNDDSVHLYELPSFMER 436 (479)
Q Consensus 402 ~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 436 (479)
.|.+.|+ ...+++++.|.+|.|||+.++...
T Consensus 452 -VFrLQFD---~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 452 -VFRLQFD---EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred -eEEEeec---ceEEEeccCCCeEEEEEcCCCCcc
Confidence 3333332 236788889999999999776543
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.7e-33 Score=232.24 Aligned_cols=283 Identities=18% Similarity=0.275 Sum_probs=232.2
Q ss_pred CceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeee--eecCCCeEEEeccCCeeEeCCCCCeEEEeec
Q 011711 101 NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTL--ERTTPKNVCYHWLSGNCVKGDECRFWHSWFC 178 (479)
Q Consensus 101 ~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~c~~~~~~~~~~g~~d~~i~vw~~ 178 (479)
+--+|+|+|.|-|||+|...++.. .+++ .......++..+....+++++ ...||+||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C-------------------~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGIC-------------------SRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeE-------------------EEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEc
Confidence 346799999999999995444321 1111 112235677777777666654 478999999
Q ss_pred CCCce-eeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe---CCCEEEEEcCCeE
Q 011711 179 GEGFT-MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC---EGPWVFVGMPNVV 254 (479)
Q Consensus 179 ~~~~~-~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~i 254 (479)
.++.. ++.+|.+|++.|+++.|..+|+.++|||+||+++|||++...+.+.+....++.++.. .+.++.+..++.|
T Consensus 69 ~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~i 148 (311)
T KOG0315|consen 69 NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNI 148 (311)
T ss_pred cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcE
Confidence 87744 8999999999999999999999999999999999999999999999999999888875 3446666689999
Q ss_pred EEEEcCCCceE--EecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCC-CCcccceeeecCCCCCeEEEEEc--CC
Q 011711 255 KAWHIESSAEF--SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNT-QNPFQLAALLKGHTRPVTCLAVG--GK 327 (479)
Q Consensus 255 ~v~~~~~~~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~h~~~i~~l~~~--~~ 327 (479)
++||+...... -.......|.++.+.++ +++++...|..++|++.... ..+++++..++.|...+..+.++ ++
T Consensus 149 rvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k 228 (311)
T KOG0315|consen 149 RVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK 228 (311)
T ss_pred EEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc
Confidence 99999987543 23445577889988887 99999999999999987643 23467788899999999998886 89
Q ss_pred EEEEEeCCCeEEEEECCCC-cEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEE
Q 011711 328 RLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLA 403 (479)
Q Consensus 328 ~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 403 (479)
+|++++.|.+++||+.++. +....+.+|...+...+|+ +.||++++.|+.+++||++.++.+....+|.....+.+
T Consensus 229 ~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 229 YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 9999999999999999998 7778889999999999988 78999999999999999999998888887766544433
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.4e-32 Score=228.03 Aligned_cols=278 Identities=25% Similarity=0.385 Sum_probs=220.6
Q ss_pred eeeecCCC--eEEEecc-CCeeEeCCCCCeEEEeecCCC--ceeeEEE-ecccccEEEEEeCCCCCEEEEEeCCCcEEEE
Q 011711 146 TLERTTPK--NVCYHWL-SGNCVKGDECRFWHSWFCGEG--FTMLAKL-EGHKKAVSGIALPLRSDKLYSGSRDGTVQLW 219 (479)
Q Consensus 146 ~~~~~~~~--~~c~~~~-~~~~~~g~~d~~i~vw~~~~~--~~~~~~~-~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vw 219 (479)
.+.++.+. .+|.++. +..+++++.|+.|++|+...+ ..+...+ .+|+..|.+++|+|.|++|+++|.|.++.||
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW 88 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence 33444443 4555555 336999999999999999842 3444444 4799999999999999999999999999999
Q ss_pred ECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEE
Q 011711 220 DCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWK 297 (479)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd 297 (479)
.-..++.... -.+++|..+|.+++|+++ +||+++.|..|-+|.
T Consensus 89 ~k~~~efecv-----------------------------------~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 89 KKEDGEFECV-----------------------------------ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWE 133 (312)
T ss_pred ecCCCceeEE-----------------------------------eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence 8765542221 246789999999999977 999999999999999
Q ss_pred ccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECC---CCcEEEEEeCCCCCcEEEEEc--CCEEE
Q 011711 298 GIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD---TLEAVMTLNGHTDAPMSLLCW--DQYLL 370 (479)
Q Consensus 298 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~---~~~~~~~~~~h~~~v~~~~~~--~~~l~ 370 (479)
+..... +++...++.|...|..+.|+ ..+|++++.|.+|++|+-. ..++++++.+|+..|.+++|+ |..|+
T Consensus 134 ~deddE--fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 134 IDEDDE--FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred ecCCCc--EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 986554 88999999999999999998 4899999999999999766 457899999999999999998 78999
Q ss_pred EEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc------eeeee--ecc
Q 011711 371 SCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM------ERGRI--FSR 442 (479)
Q Consensus 371 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------~~~~~--~~~ 442 (479)
+++.|++++||..... ....|......+.+ . +| +|++++.|+.|++|.-.... .+... .|.
T Consensus 212 s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~W----~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe 280 (312)
T KOG0645|consen 212 SCSDDGTVSIWRLYTD----LSGMHSRALYDVPW----D-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHE 280 (312)
T ss_pred EecCCcceEeeeeccC----cchhcccceEeeee----c-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccc
Confidence 9999999999976522 11123333333333 2 33 79999999999999766431 11111 246
Q ss_pred CceEEEEECCCc--eEEEEcCCCcEEEEEec
Q 011711 443 REVRVIETGPDG--LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 443 ~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~ 471 (479)
..|++++|.|.. +|++|+.||.|++|.+.
T Consensus 281 ~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 281 VDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 789999999953 99999999999999975
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=229.16 Aligned_cols=265 Identities=19% Similarity=0.281 Sum_probs=215.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecCCc-ee--EEEeCCCEEEEEcCCeEEEEEcCCCce---EEecCCCccEEEE
Q 011711 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLGAE-VG--SLICEGPWVFVGMPNVVKAWHIESSAE---FSLDGPVGEVYSM 277 (479)
Q Consensus 204 ~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~i~v~~~~~~~~---~~~~~~~~~v~~~ 277 (479)
.-+|+|+|.|.+||+|...+|.+..++++... +. .+.+++..|+++....|++||++++.. .++.+|...|.++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 35799999999999999999999999998754 33 455799999999999999999998765 5788999999999
Q ss_pred EEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEe
Q 011711 278 VVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (479)
Q Consensus 278 ~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 353 (479)
.|..+ .+++|++||+++|||++... .+....|..+|+++..+ ...|++|..+|.|++||+....+...+.
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~------~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLS------CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcc------cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 99877 99999999999999998843 33445678999999997 6789999999999999999987777665
Q ss_pred CCC-CCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEecc--ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 011711 354 GHT-DAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYT--HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (479)
Q Consensus 354 ~h~-~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iw 428 (479)
... ..+.++... |.+++.+...|..++|++-+......+.. .-.......+.+.++|+++ +|++++.|.+++||
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iw 242 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIW 242 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEE
Confidence 433 346665554 89999999999999999876532221111 1112233456666789999 89999999999999
Q ss_pred ecCCC-ceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCCC
Q 011711 429 ELPSF-MERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 429 d~~~~-~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~ 475 (479)
+.+++ +....+. |...+...+||.|| +|+||+.|+.+++|++..++.
T Consensus 243 n~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 243 NTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred ecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCce
Confidence 99998 3333333 36689999999999 999999999999999988763
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-33 Score=248.75 Aligned_cols=281 Identities=25% Similarity=0.377 Sum_probs=243.9
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeE
Q 011711 86 VSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCV 165 (479)
Q Consensus 86 ~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 165 (479)
+.||..+|+.+-+.|+-..++++++|+++++||..+......-..+ ..+ ...+.++-.+..++
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH----t~s-------------v~di~~~a~Gk~l~ 166 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH----TDS-------------VFDISFDASGKYLA 166 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc----ccc-------------eeEEEEecCccEEE
Confidence 4889999999999999999999999999999998876641111111 111 23556666677899
Q ss_pred eCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCE
Q 011711 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPW 245 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
+.+.|-.+.+||.++.+++++.+.+|+..|.+++|-|.|.++++++.|.+|+.|++.+|.++.++.
T Consensus 167 tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-------------- 232 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-------------- 232 (406)
T ss_pred ecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc--------------
Confidence 999999999999999889999999999999999999999999999999999999999999987765
Q ss_pred EEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEE
Q 011711 246 VFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLA 323 (479)
Q Consensus 246 l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~ 323 (479)
+|...|..+..+.| ++++++.|.+|++|-+.+.+ ....+..|+-+|.|++
T Consensus 233 -----------------------~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~-----~k~~lR~hEh~vEci~ 284 (406)
T KOG0295|consen 233 -----------------------GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ-----CKAELREHEHPVECIA 284 (406)
T ss_pred -----------------------CchHhEEEEEecCCeeEEEecCCCceEEEEEeccch-----hhhhhhccccceEEEE
Confidence 56777888888877 89999999999999988864 3567889999999998
Q ss_pred Ec------------C-----CEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcC
Q 011711 324 VG------------G-----KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 324 ~~------------~-----~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (479)
|- + .++.+++.|++|++||+.++.++.++.+|.+.|..+++. |+||+++..|+++++||++
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 81 2 589999999999999999999999999999999999999 8999999999999999999
Q ss_pred CCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeec
Q 011711 385 EEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 430 (479)
+.++...+..|..-+.++.+ +...+++++|+-|..+++|..
T Consensus 365 ~~~cmk~~~ah~hfvt~lDf-----h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 365 NLQCMKTLEAHEHFVTSLDF-----HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cceeeeccCCCcceeEEEec-----CCCCceEEeccccceeeeeec
Confidence 99999888887776666666 555569999999999999974
No 27
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=247.57 Aligned_cols=247 Identities=25% Similarity=0.465 Sum_probs=223.0
Q ss_pred CceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcC
Q 011711 181 GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIE 260 (479)
Q Consensus 181 ~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~ 260 (479)
.+++.+.+++|.+.|.++++.|.+++|+||+.|++|+|||+.+|+...++
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl------------------------------ 189 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL------------------------------ 189 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee------------------------------
Confidence 34678889999999999999999999999999999999999999877544
Q ss_pred CCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC
Q 011711 261 SSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN 336 (479)
Q Consensus 261 ~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg 336 (479)
.+|...|..+++++. ++++++.|+.|+.||+..++ .+..+.+|-..|.|++.. -+.|++|+.|.
T Consensus 190 -------tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk-----vIR~YhGHlS~V~~L~lhPTldvl~t~grDs 257 (460)
T KOG0285|consen 190 -------TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK-----VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDS 257 (460)
T ss_pred -------cchhheeeeeeecccCceEEEecCCCeeEEEechhhh-----hHHHhccccceeEEEeccccceeEEecCCcc
Confidence 478889999999988 99999999999999998865 478899999999999998 78899999999
Q ss_pred eEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCc
Q 011711 337 TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNP 414 (479)
Q Consensus 337 ~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (479)
++++||+++...+..+.+|..+|.++.+. +..+++|+.|++|++||++.++....+..|+..+.++++ +|...
T Consensus 258 t~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~l----hP~e~- 332 (460)
T KOG0285|consen 258 TIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCL----HPKEN- 332 (460)
T ss_pred eEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEec----CCchh-
Confidence 99999999999999999999999999988 789999999999999999999998888888887776666 47665
Q ss_pred EEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCceEEEEcCCCcEEEEEeccCCC
Q 011711 415 VLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDGLFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 415 ~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~~~ 475 (479)
.+++++.| .|+-|+++.++.+..+.. ..-+.+++...||.+++|+++|.+.+||+.++.+
T Consensus 333 ~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 333 LFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred hhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcc
Confidence 78888766 599999999998888664 6679999999999999999999999999998765
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.9e-33 Score=269.00 Aligned_cols=266 Identities=22% Similarity=0.317 Sum_probs=222.6
Q ss_pred CCCCCCCCCCCceeccCCCCCCccccccccCCC-CCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCC
Q 011711 91 KSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPD-RTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDE 169 (479)
Q Consensus 91 ~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~ 169 (479)
..+++..||+|+..+|.|..|-.|++|.+.... ...+.... ....-+++.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~-----------------------------l~~~d~~sa 429 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASD-----------------------------LSNIDTESA 429 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhh-----------------------------hcccccccc
Confidence 356888999999999999999999999766421 00000000 001112223
Q ss_pred CCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEE
Q 011711 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVG 249 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (479)
|-.+..-|-... ....++.||.++|..+.|+|+.++|+++|.|++||+|.+.+..++..+
T Consensus 430 d~~~~~~D~~~~-~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y------------------- 489 (707)
T KOG0263|consen 430 DVDVDMLDDDSS-GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY------------------- 489 (707)
T ss_pred chhhhhccccCC-ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe-------------------
Confidence 333555555555 456669999999999999999999999999999999999988776544
Q ss_pred cCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--
Q 011711 250 MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-- 325 (479)
Q Consensus 250 ~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-- 325 (479)
.+|..+|..+.|+|. ++|+++.|++-++|..... ++.+.+.+|.+.|.|+.|+
T Consensus 490 ------------------~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-----~PlRifaghlsDV~cv~FHPN 546 (707)
T KOG0263|consen 490 ------------------KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-----KPLRIFAGHLSDVDCVSFHPN 546 (707)
T ss_pred ------------------cCCCcceeeEEecCCceEEEecCCCceeeeeecccC-----CchhhhcccccccceEEECCc
Confidence 479999999999998 9999999999999998774 3578899999999999997
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEE
Q 011711 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLA 403 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 403 (479)
.+++++||.|.+|++||+.+|..++.|.+|.++|.+++++ |.+|++|+.||.|++||+.++..+..+..|...+..+.
T Consensus 547 s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls 626 (707)
T KOG0263|consen 547 SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS 626 (707)
T ss_pred ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEE
Confidence 8899999999999999999999999999999999999998 89999999999999999999999999999977766666
Q ss_pred EeeeeCCCCCcEEEEEeCCCeEEEeecCCC
Q 011711 404 LGGLNDPDGNPVLICSCNDDSVHLYELPSF 433 (479)
Q Consensus 404 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 433 (479)
+ +.+|. +||+|+.|++|++||+...
T Consensus 627 F----S~dg~-vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 627 F----SRDGN-VLASGGADNSVRLWDLTKV 651 (707)
T ss_pred E----ecCCC-EEEecCCCCeEEEEEchhh
Confidence 6 59998 9999999999999998653
No 29
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9e-34 Score=257.80 Aligned_cols=282 Identities=18% Similarity=0.258 Sum_probs=230.9
Q ss_pred CCCCCCCCCCCCCCCC-CceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCe
Q 011711 85 PVSNHKKSPPSYNCPK-NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~-~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 163 (479)
.+.||...|.++.|.| .|..++|+|.|+.|+||
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW---------------------------------------------- 242 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLW---------------------------------------------- 242 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEE----------------------------------------------
Confidence 5678888888888866 77777777776666666
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCC
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
++.....++++|.||..+|.+++|+++|..++|+|.|+.|++||+++|++...+..+.
T Consensus 243 -------------~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~--------- 300 (503)
T KOG0282|consen 243 -------------NVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK--------- 300 (503)
T ss_pred -------------EEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC---------
Confidence 3333337899999999999999999999999999999999999999999998886443
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeE
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~ 320 (479)
.++++.+.|+ .+++|+.|+.|+.||+++++ +++.+..|-+.|.
T Consensus 301 -----------------------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-----vvqeYd~hLg~i~ 346 (503)
T KOG0282|consen 301 -----------------------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-----VVQEYDRHLGAIL 346 (503)
T ss_pred -----------------------------CceeeecCCCCCcEEEEecCCCcEEEEeccchH-----HHHHHHhhhhhee
Confidence 3456666655 89999999999999999975 5788889999999
Q ss_pred EEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEE---eCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEecc-
Q 011711 321 CLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL---NGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYT- 394 (479)
Q Consensus 321 ~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~---~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~- 394 (479)
.+.|- +.++++.+.|++++||+.+..-.++.+ ..|+-+...+...+++++.-+.|+.|.++.+...-.+.....
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f 426 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF 426 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhh
Confidence 99994 999999999999999999987665544 456666666777799999999999999998765433222111
Q ss_pred ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc--eEEEEcCCCcEEEEE
Q 011711 395 HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG--LFFTGDGTGMLSVWK 469 (479)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g--~l~sg~~dg~v~vw~ 469 (479)
....+...++.+.+||||. +|++|+.||.+.+||.++-+++..+.. .+.+..+.|+|.. .+||++.||.|++|+
T Consensus 427 eGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 427 EGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeccCceeeEEEcCCCC-eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 1222344566667799999 999999999999999999999888875 5899999999987 999999999999996
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-31 Score=244.31 Aligned_cols=354 Identities=14% Similarity=0.209 Sum_probs=265.6
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEe
Q 011711 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVK 166 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 166 (479)
.+|++.|.+++||||++.+++.|.|.++||||..+.... .. ...+. ......+-..|..+.+++
T Consensus 232 ~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv----~t--~~~~~----------~v~dqqvG~lWqkd~lIt 295 (603)
T KOG0318|consen 232 DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV----ST--WPMGS----------TVEDQQVGCLWQKDHLIT 295 (603)
T ss_pred CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE----EE--eecCC----------chhceEEEEEEeCCeEEE
Confidence 589999999999999999999999999999987765320 00 00010 111234444566889999
Q ss_pred CCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEE--ecCCceeEEEe--C
Q 011711 167 GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI--NLGAEVGSLIC--E 242 (479)
Q Consensus 167 g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~--~~~~~~~~~~~--~ 242 (479)
-+.+|+|..++.... .+++.+.||...|++++.++++++|+||+.||.|.-|+..+|..-+.. .+...+..+.. .
T Consensus 296 VSl~G~in~ln~~d~-~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 296 VSLSGTINYLNPSDP-SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES 374 (603)
T ss_pred EEcCcEEEEecccCC-ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC
Confidence 999999999999998 599999999999999999999999999999999999999998876654 23445666654 3
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEec--CCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLD--GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~--~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
+.++.++.|.++++.++..+..-... .-..+-.+++..++ .++..+.++.+.+=|...- .... -.-.
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~--------~~~~-~~y~ 445 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV--------SSIP-IGYE 445 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc--------eeec-cccc
Confidence 77888999999999988655432111 11222337777666 5555555544444333321 1111 1223
Q ss_pred eEEEEE--cCCEEEEEeCCCeEEEEECCCCcE--EEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEe
Q 011711 319 VTCLAV--GGKRLYSGSMDNTIRVWDLDTLEA--VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVA 392 (479)
Q Consensus 319 i~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 392 (479)
..++++ +++.+++|+.|+.|++|.+..++. ...+..|..++++++++ +.+|+++...+.+.+||+.+.+.....
T Consensus 446 ~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~ 525 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR 525 (603)
T ss_pred cceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce
Confidence 445555 499999999999999999987654 33567899999999998 789999999999999999887653322
Q ss_pred cc-ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee--ccCceEEEEECCCceEEEEcCCCcEEEEE
Q 011711 393 YT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF--SRREVRVIETGPDGLFFTGDGTGMLSVWK 469 (479)
Q Consensus 393 ~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~l~~s~~g~l~sg~~dg~v~vw~ 469 (479)
.. |...+.+ +.|+|+.. ++|+|+.|..|.||+++.......+. |...|+.+.|-.+..+++.+.|-.|++|+
T Consensus 526 w~FHtakI~~----~aWsP~n~-~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 526 WAFHTAKINC----VAWSPNNK-LVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWN 600 (603)
T ss_pred eeeeeeeEEE----EEeCCCce-EEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEec
Confidence 22 5444444 44579988 99999999999999998866654443 45569999999888999999999999999
Q ss_pred ec
Q 011711 470 IL 471 (479)
Q Consensus 470 ~~ 471 (479)
+.
T Consensus 601 v~ 602 (603)
T KOG0318|consen 601 VT 602 (603)
T ss_pred cc
Confidence 74
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.6e-32 Score=244.75 Aligned_cols=284 Identities=21% Similarity=0.333 Sum_probs=243.8
Q ss_pred eEEEecccccEEEEEeCCCCC-EEEEEeCCCcEEEEECCCC--ce-------------EEEEecCCceeEEEe--CCCEE
Q 011711 185 LAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTG--QS-------------ASVINLGAEVGSLIC--EGPWV 246 (479)
Q Consensus 185 ~~~~~~H~~~V~~l~~s~~~~-~l~s~s~Dg~v~vwd~~~~--~~-------------~~~~~~~~~~~~~~~--~~~~l 246 (479)
.+.+. |+.+|.+.+|+|-.. .+++++.|-+.++|++... .. .+.......+.++.. +|.+|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 34444 999999999999877 8999999999999998751 11 122223355677776 58899
Q ss_pred EEE-cCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEE
Q 011711 247 FVG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLA 323 (479)
Q Consensus 247 ~~~-~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~ 323 (479)
++| .+|.+++|+.......++..|.++|.++.|+.+ +|++++.||++.+||..++.. .+.+.-|..+-..+.
T Consensus 251 atG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-----~q~f~~~s~~~lDVd 325 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-----KQQFEFHSAPALDVD 325 (524)
T ss_pred EEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-----EEeeeeccCCccceE
Confidence 887 899999999999999999999999999999977 999999999999999987653 566777888867788
Q ss_pred Ec-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccc
Q 011711 324 VG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHG 400 (479)
Q Consensus 324 ~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 400 (479)
|- ...|++.+.|+.|+++.+....++.++.+|.+.|.++.|+ +.+|++++.|++++||+.........+..|...+.
T Consensus 326 W~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~ 405 (524)
T KOG0273|consen 326 WQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIY 405 (524)
T ss_pred EecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcccee
Confidence 84 8889999999999999999999999999999999999999 89999999999999999988888888888888776
Q ss_pred eEEEeee----eCCCCCcEEEEEeCCCeEEEeecCCCceeeee-eccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 401 VLALGGL----NDPDGNPVLICSCNDDSVHLYELPSFMERGRI-FSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 401 ~~~~~~~----~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
.+.++.. ++|..+..+++++.|++|++||+..+.++..+ .|..+|.+++|+|+| ++++|+.||.|.+|+.+..+
T Consensus 406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 406 TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred eEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 6655421 23444558999999999999999999999998 689999999999999 99999999999999998754
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=241.57 Aligned_cols=271 Identities=23% Similarity=0.284 Sum_probs=241.1
Q ss_pred CCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCC-ceEEEE
Q 011711 152 PKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-QSASVI 230 (479)
Q Consensus 152 ~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~-~~~~~~ 230 (479)
...+-+++.....+++++|.+|++||..++ ++...++||++.|.+|+|+..|++|++++.|=.+++||.++- ++++
T Consensus 111 vt~v~~hp~~~~v~~as~d~tikv~D~~tg-~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k-- 187 (406)
T KOG0295|consen 111 VTRVIFHPSEALVVSASEDATIKVFDTETG-ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK-- 187 (406)
T ss_pred eeeeeeccCceEEEEecCCceEEEEEccch-hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH--
Confidence 346677888889999999999999999999 889999999999999999999999999999999999998752 2222
Q ss_pred ecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccc
Q 011711 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQL 308 (479)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~ 308 (479)
...+|...|.++++-|. ++++++.|.+|+.|++.++- .
T Consensus 188 -----------------------------------s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-----c 227 (406)
T KOG0295|consen 188 -----------------------------------SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-----C 227 (406)
T ss_pred -----------------------------------HhcCcccceeeEEEEecCCeeeecccccceeEEecccce-----e
Confidence 23467777888887654 99999999999999999975 4
Q ss_pred eeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc------------C-----CEE
Q 011711 309 AALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW------------D-----QYL 369 (479)
Q Consensus 309 ~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~------------~-----~~l 369 (479)
+.++.+|..-|..+..+ |..+++++.|.+|++|-+.++++...+..|.-+|.+++|- + +++
T Consensus 228 v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l 307 (406)
T KOG0295|consen 228 VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVL 307 (406)
T ss_pred EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEE
Confidence 88899999999999996 8889999999999999999999999999999998888873 2 589
Q ss_pred EEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEE
Q 011711 370 LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVI 448 (479)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l 448 (479)
.+++.|++|++||+.++.++..+.+|...+..+++ +|.|+ +|++..+|+++++||+++.++...+. |..-++++
T Consensus 308 ~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af----~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 308 GSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAF----SPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL 382 (406)
T ss_pred EeecccceEEEEeccCCeEEEEEecccceeeeeEE----cCCCe-EEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence 99999999999999999999999999999888888 48888 88888899999999999999888876 47789999
Q ss_pred EECCCc-eEEEEcCCCcEEEEEe
Q 011711 449 ETGPDG-LFFTGDGTGMLSVWKI 470 (479)
Q Consensus 449 ~~s~~g-~l~sg~~dg~v~vw~~ 470 (479)
.|+.+. +++||+-|..+++|.-
T Consensus 383 Dfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 383 DFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ecCCCCceEEeccccceeeeeec
Confidence 999998 9999999999999973
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.7e-32 Score=223.12 Aligned_cols=272 Identities=21% Similarity=0.293 Sum_probs=232.2
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
..+-+.-.++.|++++.|++|++|+...+ .+++++.+|...|.+++.+.|+..+++|+.|+.|.+||+++|+..+.+.
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg-~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r- 98 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRG-ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR- 98 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeeccccc-ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc-
Confidence 34556667789999999999999999999 8999999999999999999999999999999999999999999887654
Q ss_pred CCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCccccee
Q 011711 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (479)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 310 (479)
+|.++|+.+.|+.+ .+++|+-|.++++||.++.. +++++
T Consensus 99 ------------------------------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s---~ePiQ 139 (307)
T KOG0316|consen 99 ------------------------------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS---FEPIQ 139 (307)
T ss_pred ------------------------------------cccceeeEEEecCcceEEEeccccceeEEEEcccCC---CCccc
Confidence 79999999999988 99999999999999999877 46778
Q ss_pred eecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceE
Q 011711 311 LLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLE 390 (479)
Q Consensus 311 ~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (479)
.+....+.|.++...+..+++|+.||+++.||++.|+....+-+|.-...++..+++..+.++.|+++++.|-++++.+.
T Consensus 140 ildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred hhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 88888999999999999999999999999999999998887777654444444448999999999999999999999999
Q ss_pred EeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCc--eEEEEECCCc-eEEEEcCCCcEEE
Q 011711 391 VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRRE--VRVIETGPDG-LFFTGDGTGMLSV 467 (479)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--v~~l~~s~~g-~l~sg~~dg~v~v 467 (479)
...+|......+..++ +... ..+++|+.||.|++||+.....+..+.+.+. +.++.++|.- .|+++... .+..
T Consensus 220 sYkGhkn~eykldc~l--~qsd-thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~ 295 (307)
T KOG0316|consen 220 SYKGHKNMEYKLDCCL--NQSD-THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLF 295 (307)
T ss_pred Hhcccccceeeeeeee--cccc-eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceec
Confidence 8888887665555443 2223 3899999999999999999999888887433 7899999988 66666543 4555
Q ss_pred EE
Q 011711 468 WK 469 (479)
Q Consensus 468 w~ 469 (479)
|.
T Consensus 296 ~~ 297 (307)
T KOG0316|consen 296 WY 297 (307)
T ss_pred ee
Confidence 64
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.2e-31 Score=280.23 Aligned_cols=292 Identities=17% Similarity=0.234 Sum_probs=222.1
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeee-ecCCCeEEEec-cC
Q 011711 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLE-RTTPKNVCYHW-LS 161 (479)
Q Consensus 84 ~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~c~~~-~~ 161 (479)
..+.+|...|.+++|+|+|.++|+|+.||+|+||+....... +.........+. ......+|+.+ ..
T Consensus 477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-----------GRDIHYPVVELASRSKLSGICWNSYIK 545 (793)
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-----------ccccccceEEecccCceeeEEeccCCC
Confidence 345679999999999999999999999999999986532110 000000000011 11122344443 34
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 240 (479)
..+++++.|++|++||+.++ +.+..+.+|.+.|++++|+| ++.+|+||+.|++|++||+.+++.+..+.
T Consensus 546 ~~las~~~Dg~v~lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--------- 615 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK--------- 615 (793)
T ss_pred CEEEEEeCCCeEEEEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---------
Confidence 68999999999999999988 78889999999999999986 78999999999999999999887665543
Q ss_pred eCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcC---CEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC
Q 011711 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN---EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (479)
Q Consensus 241 ~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~ 317 (479)
+...+.++.|.+ ..|++|+.||.|++||++.... ....+.+|..
T Consensus 616 -----------------------------~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~~ 662 (793)
T PLN00181 616 -----------------------------TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHSK 662 (793)
T ss_pred -----------------------------cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCCC
Confidence 223567777743 3899999999999999976532 3456789999
Q ss_pred CeEEEEEc-CCEEEEEeCCCeEEEEECCC------CcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcc
Q 011711 318 PVTCLAVG-GKRLYSGSMDNTIRVWDLDT------LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN 388 (479)
Q Consensus 318 ~i~~l~~~-~~~l~sgs~dg~I~iwd~~~------~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~ 388 (479)
.|.++.|. +.++++++.|++|++||++. .+++.++.+|...+..+.++ +.+|++|+.|+.|++|+......
T Consensus 663 ~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 663 TVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred CEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc
Confidence 99999996 88999999999999999974 36788999999988887776 78999999999999999876543
Q ss_pred eEEeccc-c--------CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeec
Q 011711 389 LEVAYTH-N--------EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 389 ~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 430 (479)
+...... . ........++.|+|++. .+++|+.||.|+||++
T Consensus 743 ~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 743 VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecccCCcccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence 3222110 0 11123345566789988 7888999999999986
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.9e-31 Score=230.81 Aligned_cols=314 Identities=17% Similarity=0.225 Sum_probs=254.9
Q ss_pred eeeeecCCCeEE--EeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 011711 145 RTLERTTPKNVC--YHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH 222 (479)
Q Consensus 145 ~~~~~~~~~~~c--~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~ 222 (479)
..+.+|..+..| .+|....+++|+.|..-.+|+..++ +....+.+|++.|+++.|+.+|.+||||+.+|.|+||+..
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g-e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG-EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC-cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 456677666554 5666778999999999999999999 6899999999999999999999999999999999999999
Q ss_pred CCceEEEEec-CCceeEEE--eCCCEEEEE-cCCeEEEEEcCC-CceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEE
Q 011711 223 TGQSASVINL-GAEVGSLI--CEGPWVFVG-MPNVVKAWHIES-SAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILV 295 (479)
Q Consensus 223 ~~~~~~~~~~-~~~~~~~~--~~~~~l~~~-~~~~i~v~~~~~-~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i 295 (479)
++.....+.. -..+.-+. +.+.++++| .|+.+-+|.+.+ .....+.+|..++++=.|.|+ .+++|..||+|++
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 9998888762 23333333 466777766 789999999999 556678899999999999888 9999999999999
Q ss_pred EEccCCCCCcccceeeec-CCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeC--------CCCCcEEEEE
Q 011711 296 WKGIPNTQNPFQLAALLK-GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNG--------HTDAPMSLLC 364 (479)
Q Consensus 296 wd~~~~~~~~~~~~~~~~-~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------h~~~v~~~~~ 364 (479)
|+..++.. ...+. ....+..++.++ +..++.|+.++.+++-+..+++.+....+ +...+.++.+
T Consensus 217 Wn~ktg~p-----~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 217 WNPKTGQP-----LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred EecCCCce-----eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 99999854 33322 234566777776 88899999999999999999998887773 3333444443
Q ss_pred c---C--CEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee
Q 011711 365 W---D--QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI 439 (479)
Q Consensus 365 ~---~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 439 (479)
. . .+.++|+.||+|.|||+.... ++....|...+..+.+ .+ . .+|++++.+|.|+.||.+++++...+
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~-~R~~c~he~~V~~l~w----~~-t-~~l~t~c~~g~v~~wDaRtG~l~~~y 364 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAAST-LRHICEHEDGVTKLKW----LN-T-DYLLTACANGKVRQWDARTGQLKFTY 364 (399)
T ss_pred cccccccchhhcccccceEEEEecccch-hheeccCCCceEEEEE----cC-c-chheeeccCceEEeeeccccceEEEE
Confidence 3 2 578899999999999997654 4555566665444444 34 3 37888999999999999999999998
Q ss_pred ec-cCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 440 FS-RREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 440 ~~-~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
.+ ...|.+++++|+. +++|++.|++.+||++.
T Consensus 365 ~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 365 TGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 74 7889999999999 99999999999999875
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6e-33 Score=232.20 Aligned_cols=281 Identities=21% Similarity=0.306 Sum_probs=234.3
Q ss_pred CCCCCCCCCCCC---CCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCe
Q 011711 87 SNHKKSPPSYNC---PKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (479)
Q Consensus 87 ~gh~~~i~~~~~---s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 163 (479)
.||+.+|..++| .|+|.+|+|++.||.-++.+-+
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~------------------------------------------- 47 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD------------------------------------------- 47 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC-------------------------------------------
Confidence 689999999999 6899999999999987776311
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCC
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
++ .-+-+|.||+++|.+.+++.+....++++.|-+-+|||.-+|..+..+.
T Consensus 48 ----------------tg-dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~------------ 98 (334)
T KOG0278|consen 48 ----------------TG-DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE------------ 98 (334)
T ss_pred ----------------CC-CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh------------
Confidence 11 3477899999999999999999999999999999999999988777664
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
|..-|.+++|+.+ .|++|+.+..+++||++.... +...+.+|.+.|..
T Consensus 99 --------------------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A----pp~E~~ghtg~Ir~ 148 (334)
T KOG0278|consen 99 --------------------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA----PPKEISGHTGGIRT 148 (334)
T ss_pred --------------------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCC----CchhhcCCCCccee
Confidence 7777889999988 999999999999999988754 35667899999999
Q ss_pred EEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEeccccCc
Q 011711 322 LAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNED 398 (479)
Q Consensus 322 l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 398 (479)
+.|. .+.+++++.|++||+||.+++..++++.- ...|.++..+ +..+++....+.|.+||..+-+.+...... ..
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~n 226 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CN 226 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc-cc
Confidence 9995 77888989999999999999999999984 4557777776 455666677789999999887766544332 22
Q ss_pred cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee--eccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCCC
Q 011711 399 HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI--FSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~ 475 (479)
+...++ +|+.. ++++|+.|..++.||..+++.+... .|.++|.|+.|+|+| ..++|++||+|++|....++.
T Consensus 227 V~SASL----~P~k~-~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 227 VESASL----HPKKE-FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cccccc----cCCCc-eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 223333 47775 8999999999999999999999885 358999999999999 999999999999999987665
Q ss_pred C
Q 011711 476 A 476 (479)
Q Consensus 476 ~ 476 (479)
.
T Consensus 302 ~ 302 (334)
T KOG0278|consen 302 Y 302 (334)
T ss_pred h
Confidence 4
No 37
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.5e-31 Score=249.50 Aligned_cols=386 Identities=18% Similarity=0.283 Sum_probs=302.2
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCC--------------CccccccCcCC-----
Q 011711 80 ESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNK--------------SSLDCSTGSDD----- 140 (479)
Q Consensus 80 ~~p~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~--------------~~~~~~~~~~~----- 140 (479)
+-+...|.||+..|+.+.|...|.+|||||.|+.|-+||+-+........ ...-.+.+.+.
T Consensus 97 ~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~W 176 (888)
T KOG0306|consen 97 EEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFW 176 (888)
T ss_pred CceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEE
Confidence 34555789999999999999999999999999999999988743221111 11122222221
Q ss_pred ----CCCeeeeeecCCCeEEEeccCCeeEeCCCCCeEEEeecCCC--------------------------ceee-----
Q 011711 141 ----SGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEG--------------------------FTML----- 185 (479)
Q Consensus 141 ----~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~--------------------------~~~~----- 185 (479)
.....+.-.+....-.+......+++++.|..+++|++... .++.
T Consensus 177 dL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~ 256 (888)
T KOG0306|consen 177 DLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSD 256 (888)
T ss_pred ecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcc
Confidence 22223333444445555555578999999999999998100 0000
Q ss_pred --------------------------------------------------------------------------------
Q 011711 186 -------------------------------------------------------------------------------- 185 (479)
Q Consensus 186 -------------------------------------------------------------------------------- 185 (479)
T Consensus 257 r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~ 336 (888)
T KOG0306|consen 257 RFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTEN 336 (888)
T ss_pred cEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcce
Confidence
Q ss_pred ------------------------------EEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCc
Q 011711 186 ------------------------------AKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE 235 (479)
Q Consensus 186 ------------------------------~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~ 235 (479)
..+.||...|.+++++.+...++||+. +++++|+..+.++++++.....
T Consensus 337 ~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~ 415 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYI 415 (888)
T ss_pred eEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccE
Confidence 013479999999999988887777765 6899999999999999988744
Q ss_pred eeE-EEeCCCEEEEE-cCCeEEEEEcCCCceE-EecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcc---c
Q 011711 236 VGS-LICEGPWVFVG-MPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPF---Q 307 (479)
Q Consensus 236 ~~~-~~~~~~~l~~~-~~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~---~ 307 (479)
..+ +.+.+++++.| ..|.+.+||+.+.... ....|.+.+.+++..|+ .+++|+.|.+|++||..--...+. +
T Consensus 416 l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k 495 (888)
T KOG0306|consen 416 LASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKK 495 (888)
T ss_pred EEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccce
Confidence 433 44566666666 6789999999988765 45689999999999988 999999999999999643211000 0
Q ss_pred -----ceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeE
Q 011711 308 -----LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTI 378 (479)
Q Consensus 308 -----~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i 378 (479)
...++ .-...|.|+.++ +.+|+++--|.++++|-+++.+..-++-+|.-+|.++..+ ++.+++||.|.+|
T Consensus 496 ~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnV 574 (888)
T KOG0306|consen 496 VLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNV 574 (888)
T ss_pred eeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCce
Confidence 00111 235678899997 9999999999999999999999999999999999888776 7899999999999
Q ss_pred EEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eE
Q 011711 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LF 456 (479)
Q Consensus 379 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l 456 (479)
++|-++-+.+-..+..|...+..+.+. |... ++.+++.|+.|+-||-..++.+..+. |...|++++.+|+| ++
T Consensus 575 KiWGLdFGDCHKS~fAHdDSvm~V~F~----P~~~-~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~v 649 (888)
T KOG0306|consen 575 KIWGLDFGDCHKSFFAHDDSVMSVQFL----PKTH-LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFV 649 (888)
T ss_pred EEeccccchhhhhhhcccCceeEEEEc----ccce-eEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeE
Confidence 999999999999999999987777775 7655 88888999999999999999999887 48899999999999 99
Q ss_pred EEEcCCCcEEEEEecc
Q 011711 457 FTGDGTGMLSVWKILA 472 (479)
Q Consensus 457 ~sg~~dg~v~vw~~~~ 472 (479)
++++.|.+|++|.-..
T Consensus 650 vs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 650 VSSSHDKSIRLWERTD 665 (888)
T ss_pred EeccCCceeEeeeccC
Confidence 9999999999998765
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9e-31 Score=249.65 Aligned_cols=360 Identities=19% Similarity=0.264 Sum_probs=272.7
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEE--EeccCCeeE
Q 011711 88 NHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVC--YHWLSGNCV 165 (479)
Q Consensus 88 gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c--~~~~~~~~~ 165 (479)
.-+.+++.+.-+++.-+||.|-.||.|+||+...... .-++.+|.....| +.-.+.+++
T Consensus 63 ~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-------------------~~tfngHK~AVt~l~fd~~G~rla 123 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI-------------------LITFNGHKAAVTTLKFDKIGTRLA 123 (888)
T ss_pred cccceEEEeeccCCcceEEEEecCceEEeeccCCCce-------------------eeeecccccceEEEEEcccCceEe
Confidence 3445778888899999999999999999997664322 1123344444554 555677999
Q ss_pred eCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-cCCceeEEEeCC-
Q 011711 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGAEVGSLICEG- 243 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~- 243 (479)
+|+.|+.|.+||+-.. .-+..++||++.|+..-|..+.+++++.+.|+.|++||+++..+..+.- +..++..+...+
T Consensus 124 SGskDt~IIvwDlV~E-~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~ 202 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGE-EGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEK 202 (888)
T ss_pred ecCCCccEEEEEeccc-eeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecc
Confidence 9999999999999766 6788999999999999999889999999999999999999988876654 345555555544
Q ss_pred CEEEEEcCCeEEEEEc----------------------------------------------------------------
Q 011711 244 PWVFVGMPNVVKAWHI---------------------------------------------------------------- 259 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~---------------------------------------------------------------- 259 (479)
..++++.+..+++|++
T Consensus 203 ~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~ 282 (888)
T KOG0306|consen 203 LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKI 282 (888)
T ss_pred eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHH
Confidence 3444456666666664
Q ss_pred ---------------------------------------------------------------------CC-Cce-----
Q 011711 260 ---------------------------------------------------------------------ES-SAE----- 264 (479)
Q Consensus 260 ---------------------------------------------------------------------~~-~~~----- 264 (479)
+. ...
T Consensus 283 l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~ 362 (888)
T KOG0306|consen 283 LSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEAD 362 (888)
T ss_pred HHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccc
Confidence 10 000
Q ss_pred ----EEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCe
Q 011711 265 ----FSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNT 337 (479)
Q Consensus 265 ----~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~ 337 (479)
+...+|...|.+++++.+ .++..+..+.+++|+..+.+ .+.++... .+.+..|- ++++++|...|.
T Consensus 363 ~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~k-----ciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Ge 435 (888)
T KOG0306|consen 363 RTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLK-----CIRTITCG--YILASKFVPGDRYIVLGTKNGE 435 (888)
T ss_pred ccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcc-----eeEEeccc--cEEEEEecCCCceEEEeccCCc
Confidence 123466777888888888 44444557899999988754 46665543 56666663 889999999999
Q ss_pred EEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCc-----ceEEec---cccCccceEEEeee
Q 011711 338 IRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG-----NLEVAY---THNEDHGVLALGGL 407 (479)
Q Consensus 338 I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~---~~~~~~~~~~~~~~ 407 (479)
+.+||+.+...+.++++|.+.+.+++.. +..+++||.|.+|++||..-.. ....+. ...-+...-.++..
T Consensus 436 l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~ 515 (888)
T KOG0306|consen 436 LQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS 515 (888)
T ss_pred eEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence 9999999999999999999999988876 7899999999999999864211 101011 11111112234444
Q ss_pred eCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCCC
Q 011711 408 NDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 408 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~ 475 (479)
.||||+ +|+++--|++|++|-+++.+..-.+. |.-+|.||.++||+ +++||+.|.+|++|-++-+.+
T Consensus 516 ~Spdgk-~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 516 VSPDGK-LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC 584 (888)
T ss_pred EcCCCc-EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh
Confidence 579999 89999999999999999988877766 58899999999999 999999999999999887654
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=257.47 Aligned_cols=271 Identities=26% Similarity=0.418 Sum_probs=234.3
Q ss_pred EeccCCeeEeCCCCCeEEEeecCCCc-eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEEC-CCCceEEEEecCC
Q 011711 157 YHWLSGNCVKGDECRFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC-HTGQSASVINLGA 234 (479)
Q Consensus 157 ~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~-~~~~~~~~~~~~~ 234 (479)
+++.+..+++++.++.+++|+..... .+++.+.+|...|.+++|+|+++++++++.|++|+|||+ ..+..++++
T Consensus 167 fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l---- 242 (456)
T KOG0266|consen 167 FSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL---- 242 (456)
T ss_pred EcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe----
Confidence 56677799999999999999996662 277888999999999999999999999999999999999 444555544
Q ss_pred ceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeee
Q 011711 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (479)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 312 (479)
.+|...|++++|+++ ++++|+.|++|++||++++. +...+
T Consensus 243 ---------------------------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-----~~~~l 284 (456)
T KOG0266|consen 243 ---------------------------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-----CVRKL 284 (456)
T ss_pred ---------------------------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-----EEEee
Confidence 479999999999988 99999999999999999854 58889
Q ss_pred cCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCc--EEEEEeCCCCC--cEEEEEc--CCEEEEEeCCCeEEEEEcC
Q 011711 313 KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLE--AVMTLNGHTDA--PMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 313 ~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~~~--v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (479)
.+|.+.|++++|+ +++|++++.|+.|++||+.+++ ++..+..+... +..+.++ +.++++++.|+.+++||+.
T Consensus 285 ~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 285 KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 9999999999997 8999999999999999999999 67888777666 7777776 7899999999999999999
Q ss_pred CCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec--cCceEEEEECCCc-eEEEEc-
Q 011711 385 EEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS--RREVRVIETGPDG-LFFTGD- 460 (479)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~l~~s~~g-~l~sg~- 460 (479)
..........|.... ...+....++.+. ++++|+.|+.|++||+.++..+..+.. ...+..+.++|.. ++++++
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 365 SGKSVGTYTGHSNLV-RCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSF 442 (456)
T ss_pred CCcceeeecccCCcc-eeEecccccCCCC-eEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCc
Confidence 998888888887763 2233344457777 999999999999999999888887775 4788999999998 888887
Q ss_pred -CCCcEEEEEec
Q 011711 461 -GTGMLSVWKIL 471 (479)
Q Consensus 461 -~dg~v~vw~~~ 471 (479)
.|+.|++|...
T Consensus 443 ~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 443 EGDGLIRLWKYD 454 (456)
T ss_pred CCCceEEEecCC
Confidence 79999999864
No 40
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.2e-29 Score=268.17 Aligned_cols=289 Identities=16% Similarity=0.260 Sum_probs=224.1
Q ss_pred CCeEEEeecCCCceeeE-----EEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCC----c----eEEEEecCCce
Q 011711 170 CRFWHSWFCGEGFTMLA-----KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG----Q----SASVINLGAEV 236 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~-----~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~----~----~~~~~~~~~~~ 236 (479)
+|..++|+...- .... .+..|.+.|.+++|+|++++||+|+.|+.|+|||+... . ....+.....+
T Consensus 457 ~gl~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKL-RVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKL 535 (793)
T ss_pred hhhhhhhcccce-EEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCce
Confidence 566777777643 2222 24459999999999999999999999999999997642 1 12223333444
Q ss_pred eEEEe---CCCEEEE-EcCCeEEEEEcCCCceE-EecCCCccEEEEEEcC-C--EEEEEeCCCcEEEEEccCCCCCcccc
Q 011711 237 GSLIC---EGPWVFV-GMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVAN-E--MLFAGAQDGNILVWKGIPNTQNPFQL 308 (479)
Q Consensus 237 ~~~~~---~~~~l~~-~~~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~-~--~l~~g~~dg~i~iwd~~~~~~~~~~~ 308 (479)
.++.+ .+.++++ +.|+.|++||+.+++.. .+.+|...|++++|++ + +|++|+.||.|++||+.++..
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~----- 610 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS----- 610 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-----
Confidence 44443 3455554 58999999999987654 5678999999999985 3 899999999999999987542
Q ss_pred eeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCc-EEEEEeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEc
Q 011711 309 AALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLE-AVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 309 ~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~ 383 (479)
...+..+ ..|.++.|. +.++++|+.||.|++||+++.+ .+..+.+|...|.++.+. +.+|++++.|++|++||+
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeC
Confidence 4445443 678999983 7899999999999999998866 577888999999999986 789999999999999999
Q ss_pred CCC------cceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee--------------eccC
Q 011711 384 TEE------GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI--------------FSRR 443 (479)
Q Consensus 384 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--------------~~~~ 443 (479)
+.. ..+..+..|...+..+.+ +|++. +|++|+.|+.|++|+.......... .+..
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~----s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 764 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGL----SVSDG-YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ 764 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEE----cCCCC-EEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc
Confidence 743 345556666655555544 58887 9999999999999998655433221 1235
Q ss_pred ceEEEEECCCc-eEEEEcCCCcEEEEEe
Q 011711 444 EVRVIETGPDG-LFFTGDGTGMLSVWKI 470 (479)
Q Consensus 444 ~v~~l~~s~~g-~l~sg~~dg~v~vw~~ 470 (479)
.|.+++|+|++ .|++|+.||.|+||++
T Consensus 765 ~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 765 FISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 69999999999 9999999999999996
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-31 Score=220.90 Aligned_cols=283 Identities=18% Similarity=0.237 Sum_probs=221.1
Q ss_pred ccCCCC---CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCe-
Q 011711 79 TESQTL---PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKN- 154 (479)
Q Consensus 79 ~~~p~~---~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (479)
+|+|.. .+.+|+..|.+++|+.||.|-.+++.|.++|+||..... ..++..+|..+.
T Consensus 3 ~e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------------------liktYsghG~EVl 63 (307)
T KOG0316|consen 3 LELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------------------LIKTYSGHGHEVL 63 (307)
T ss_pred ccCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-------------------eeeeecCCCceee
Confidence 466664 347999999999999999999999999999999633321 223333333332
Q ss_pred -EEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc--eEEEEe
Q 011711 155 -VCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ--SASVIN 231 (479)
Q Consensus 155 -~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~--~~~~~~ 231 (479)
.........+++++.|+.+.+||++++ +.++.+.+|.+.|+.++|+.+...+++|+.|.++++||..+.. +++.
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TG-kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi-- 140 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTG-KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI-- 140 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccC-eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch--
Confidence 344556678999999999999999999 9999999999999999999999999999999999999998653 2222
Q ss_pred cCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceee
Q 011711 232 LGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAAL 311 (479)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 311 (479)
+......|.++......|++|+.||+++.||++.+.. .
T Consensus 141 -----------------------------------ldea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l-----~-- 178 (307)
T KOG0316|consen 141 -----------------------------------LDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTL-----S-- 178 (307)
T ss_pred -----------------------------------hhhhcCceeEEEecccEEEeeccCCcEEEEEeeccee-----e--
Confidence 3345677889999999999999999999999998753 2
Q ss_pred ecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc----CCEEEEEeCCCeEEEEEcCC
Q 011711 312 LKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW----DQYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 312 ~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~iwd~~~ 385 (479)
..-...+|+|++|+ ++..+.++.|+++++.|-.+|++++.+++|...-..+.+. ...+++|++||.|++||+.+
T Consensus 179 sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 179 SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 23345689999996 8999999999999999999999999999998876554443 67999999999999999998
Q ss_pred CcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeec
Q 011711 386 EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 430 (479)
...+..+..+... +...+.+.|.-..++.++ ++.+..|--
T Consensus 259 ~~~~sk~~~~~~v---~v~dl~~hp~~~~f~~A~--~~~~~~~~~ 298 (307)
T KOG0316|consen 259 ETQISKLSVVSTV---IVTDLSCHPTMDDFITAT--GHGDLFWYQ 298 (307)
T ss_pred ceeeeeeccCCce---eEEeeecccCccceeEec--CCceeceee
Confidence 8766655554432 233334456655444443 455666643
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-30 Score=256.97 Aligned_cols=283 Identities=24% Similarity=0.385 Sum_probs=229.8
Q ss_pred CCC-CCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeee--eeecCCCeEEEeccCCe
Q 011711 87 SNH-KKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRT--LERTTPKNVCYHWLSGN 163 (479)
Q Consensus 87 ~gh-~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~c~~~~~~~ 163 (479)
.+| ...|..++|+++|+++++++.|+.+++|+...... ...+. -+......+|+.+.+..
T Consensus 155 ~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 155 AGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred cccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEECCCCcE
Confidence 444 77888899999999999999999999997633221 00011 11223357788888889
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCC
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
+++++.|++|+|||+......++++++|...|++++|+|+++++++|+.|++|+|||+.++++...+.
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~------------ 285 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK------------ 285 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee------------
Confidence 99999999999999965558999999999999999999999999999999999999999988887654
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC--e
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP--V 319 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~--i 319 (479)
+|...|.++++.++ .|++++.||.|++||+.++... +...+..+..+ +
T Consensus 286 -------------------------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~ 337 (456)
T KOG0266|consen 286 -------------------------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSAPV 337 (456)
T ss_pred -------------------------ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCCce
Confidence 68889999999988 8999999999999999987521 23455555544 9
Q ss_pred EEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEE---c--CCEEEEEeCCCeEEEEEcCCCcceEEe
Q 011711 320 TCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC---W--DQYLLSCSLDNTIKVWIMTEEGNLEVA 392 (479)
Q Consensus 320 ~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~---~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 392 (479)
+++.|+ +.++++++.|+.+++||+..++++..+.+|...+.++.. . +.++++|+.|+.|++||+.+...+..+
T Consensus 338 ~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 338 TSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred eEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence 999996 899999999999999999999999999999887433321 1 789999999999999999998888888
Q ss_pred ccc-cCccceEEEeeeeCCCCCcEEEEEe--CCCeEEEeecC
Q 011711 393 YTH-NEDHGVLALGGLNDPDGNPVLICSC--NDDSVHLYELP 431 (479)
Q Consensus 393 ~~~-~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~v~iwd~~ 431 (479)
..| ...+.... ++|..+ ++++++ .|+.+++|..+
T Consensus 418 ~~h~~~~~~~~~----~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 EGHSKAAVSDLS----SHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCCCceeccc----cCCCcC-eeeecCcCCCceEEEecCC
Confidence 777 33333333 346665 788877 78999999764
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.7e-29 Score=235.03 Aligned_cols=275 Identities=28% Similarity=0.461 Sum_probs=224.8
Q ss_pred eEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-ceeEEE--eCCCEEEE-EcCCeEEEEEcC
Q 011711 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA-EVGSLI--CEGPWVFV-GMPNVVKAWHIE 260 (479)
Q Consensus 185 ~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~-~~~~~i~v~~~~ 260 (479)
++.+++|.++|++++|+|++++|++++.||.|++|++.+++....+..+. .+..+. ++++.+++ +.++.+++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45678999999999999999999999999999999999888766665443 332444 35555555 469999999999
Q ss_pred CCce-EEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCC
Q 011711 261 SSAE-FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD 335 (479)
Q Consensus 261 ~~~~-~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~d 335 (479)
+++. ..+..|...+.++.+.++ ++++++.||.|.+||+.+.. ....+..|...|.++.++ +.++++++.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-----CLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-----EEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence 8543 456678889999999986 67777779999999998543 356667899999999997 5777777779
Q ss_pred CeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCC
Q 011711 336 NTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGN 413 (479)
Q Consensus 336 g~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (479)
+.|++||+++++.+..+..|...+.++.+. ++.+++++.|+.|++||++.......+..+...+..+.+ +|++.
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~----~~~~~ 232 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF----SPDGY 232 (289)
T ss_pred CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEE----cCCCc
Confidence 999999999999999999999899999998 448999999999999999887766665555554444444 57755
Q ss_pred cEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEE
Q 011711 414 PVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWK 469 (479)
Q Consensus 414 ~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~ 469 (479)
++++++.|+.|++||+.+++....+. +...+.+++|+|++ .|++++.||.|++|+
T Consensus 233 -~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 233 -LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 78888779999999999887777665 46789999999998 999999999999996
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.1e-31 Score=245.14 Aligned_cols=244 Identities=20% Similarity=0.282 Sum_probs=205.4
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeE
Q 011711 86 VSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCV 165 (479)
Q Consensus 86 ~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 165 (479)
+..|+..|.++.++|..-++..+-..|.+.|||-++..- -..+. ....+.....|....+-++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm----Vksfe-------------V~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM----VKSFE-------------VSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee----eeeee-------------ecccchhhheeeeccceEE
Confidence 445788999999999999999999999999997554321 00000 1111223333444556899
Q ss_pred eCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCE
Q 011711 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPW 245 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
+|++|..|+||+..+. +.++.|.+|.+-|.+|+.+|...+++|+|.|-+|++||.+.+-.
T Consensus 72 ~GsDD~~IrVfnynt~-ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa------------------- 131 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTG-EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA------------------- 131 (794)
T ss_pred EecCCceEEEEecccc-eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee-------------------
Confidence 9999999999999999 88999999999999999999999999999999999999875422
Q ss_pred EEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEE
Q 011711 246 VFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (479)
Q Consensus 246 l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l 322 (479)
...++.+|...|.+++|+|+ .+++++-|++|++|.+.+.. +..++++|...|+|+
T Consensus 132 -----------------~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-----~nfTl~gHekGVN~V 189 (794)
T KOG0276|consen 132 -----------------CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-----PNFTLEGHEKGVNCV 189 (794)
T ss_pred -----------------eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-----CceeeeccccCcceE
Confidence 12456789999999999987 99999999999999998865 478899999999999
Q ss_pred EEc----CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcC--CEEEEEeCCCeEEEEEcCCCcc
Q 011711 323 AVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD--QYLLSCSLDNTIKVWIMTEEGN 388 (479)
Q Consensus 323 ~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~ 388 (479)
.+- ..+|++|+.|.+|+|||.++.+|++++.+|...|..+.+.+ ..+++|++||+++||...+-+.
T Consensus 190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence 994 45999999999999999999999999999999999999986 5899999999999998776543
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.3e-30 Score=243.68 Aligned_cols=268 Identities=20% Similarity=0.305 Sum_probs=242.2
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
+.+-++|...-++++-..|.+.||+.++. .+++.+.-..-+|.+..|-+..+.+++|+.|..|+|++..+++.+..+.
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetq-tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~Fe- 94 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQ-TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFE- 94 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccc-eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEee-
Confidence 45667888888889999999999999998 8999999999999999999999999999999999999999999887664
Q ss_pred CCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCccccee
Q 011711 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (479)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 310 (479)
.|...|.+++.+|. ++++++.|-.|++||...+ +.+.+
T Consensus 95 ------------------------------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~----wa~~q 134 (794)
T KOG0276|consen 95 ------------------------------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE----WACEQ 134 (794)
T ss_pred ------------------------------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCc----eeeee
Confidence 68999999999999 9999999999999999876 67789
Q ss_pred eecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc-C---CEEEEEeCCCeEEEEEc
Q 011711 311 LLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-D---QYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 311 ~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-~---~~l~s~s~dg~i~iwd~ 383 (479)
++.+|...|.+++|+ .+.+++++-|++|++|.+.+..+..++++|...|.++.+. + .+|++|+.|.+|+|||.
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy 214 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY 214 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeec
Confidence 999999999999997 7899999999999999999999999999999999999998 3 49999999999999999
Q ss_pred CCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcC
Q 011711 384 TEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDG 461 (479)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~ 461 (479)
.+..+++.+.+|...+....+ +|.-. ++++|+.||+|+||+..+.+....+. ..+.+++++-.+.+ .++.|.+
T Consensus 215 Qtk~CV~TLeGHt~Nvs~v~f----hp~lp-iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 215 QTKSCVQTLEGHTNNVSFVFF----HPELP-IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred chHHHHHHhhcccccceEEEe----cCCCc-EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence 999999999999988877776 35554 99999999999999999988777665 47889999999877 8888888
Q ss_pred CCcEEE
Q 011711 462 TGMLSV 467 (479)
Q Consensus 462 dg~v~v 467 (479)
.|.|.+
T Consensus 290 eg~i~v 295 (794)
T KOG0276|consen 290 EGSVTV 295 (794)
T ss_pred CCcEEE
Confidence 887643
No 46
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=7.4e-31 Score=252.50 Aligned_cols=270 Identities=18% Similarity=0.304 Sum_probs=224.8
Q ss_pred EecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCc-eEE
Q 011711 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSA-EFS 266 (479)
Q Consensus 188 ~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~-~~~ 266 (479)
+.--...++|..|++|+.+||.|-.|..|++|.+...+.. .++......... ..+.|-.+...|..+.. ..+
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~~l~~~d------~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK-KLKDASDLSNID------TESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhc-cccchhhhcccc------ccccchhhhhccccCCceeEE
Confidence 3333567999999999999999999999999998854321 111111100000 00111123334444333 345
Q ss_pred ecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEE
Q 011711 267 LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWD 342 (479)
Q Consensus 267 ~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd 342 (479)
+.+|.++|+...|+|+ +|+++++|++|++|.+.+.. .+..+++|..||..+.|+ |-+|+|++.|++.++|.
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-----~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-----CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccce-----eEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 8899999999999999 99999999999999999864 477889999999999998 88999999999999999
Q ss_pred CCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe
Q 011711 343 LDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (479)
Q Consensus 343 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 420 (479)
....++++.+.+|-+.|-|+.|+ ..++++||.|.++|+||+.++..++.+.+|..++.+++++ |+|. +|++|+
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S----p~Gr-~LaSg~ 596 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS----PCGR-YLASGD 596 (707)
T ss_pred cccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc----CCCc-eEeecc
Confidence 99999999999999999999998 5799999999999999999999999999999998888885 9998 999999
Q ss_pred CCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 421 NDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 421 ~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
.|+.|.+||+.+++.+..+. |.+.|.++.|+.|| .|++|+.|.+|++||+....
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 99999999999998888776 58889999999999 99999999999999987643
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.2e-29 Score=236.02 Aligned_cols=279 Identities=28% Similarity=0.416 Sum_probs=225.7
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCC--CeEEEeccC
Q 011711 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLS 161 (479)
Q Consensus 84 ~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~ 161 (479)
..+.+|..+|.+++|+|++.++++++.||.+++|+..+... ......+.. ..+.+.+..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-------------------~~~~~~~~~~i~~~~~~~~~ 63 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-------------------LRTLKGHTGPVRDVAASADG 63 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-------------------EEEEecCCcceeEEEECCCC
Confidence 35678999999999999999999999999999998665431 011111111 234455555
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 241 (479)
..+++++.++.|++|++.++ +.+..+..|...|.+++|+++++++++++.|+.|++||+.+++....+.
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------- 132 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETG-ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---------- 132 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcc-cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec----------
Confidence 68999999999999999887 6788889999999999999999999999989999999998766554432
Q ss_pred CCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCe
Q 011711 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (479)
Q Consensus 242 ~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i 319 (479)
.|...+.++.++++ ++++++.||.|.+||+.... ....+..|...|
T Consensus 133 ---------------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----~~~~~~~~~~~i 180 (289)
T cd00200 133 ---------------------------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-----CVATLTGHTGEV 180 (289)
T ss_pred ---------------------------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-----cceeEecCcccc
Confidence 46678899999985 66667779999999998653 355667888899
Q ss_pred EEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccc
Q 011711 320 TCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395 (479)
Q Consensus 320 ~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (479)
.++.++ ++.+++++.|+.|++||+++++.+..+..|...+.++.+. +.++++++.||.|++||+.+......+..+
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 260 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH 260 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc
Confidence 999997 5589999999999999999999999998899899999988 467777777999999999987777777666
Q ss_pred cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 011711 396 NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (479)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd 429 (479)
...+..+.+ +|+++ ++++++.|+.|++|+
T Consensus 261 ~~~i~~~~~----~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAW----SPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEE----CCCCC-EEEEecCCCeEEecC
Confidence 555544444 58877 888899999999996
No 48
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=9.1e-30 Score=224.12 Aligned_cols=323 Identities=16% Similarity=0.210 Sum_probs=251.7
Q ss_pred CCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEecc--
Q 011711 83 TLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWL-- 160 (479)
Q Consensus 83 ~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~-- 160 (479)
..+|..|++++.+++.+|+..++|+||.|....||+..+.... -.+.+|....+|..|.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-------------------~eltgHKDSVt~~~Fshd 117 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-------------------GELTGHKDSVTCCSFSHD 117 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-------------------eEecCCCCceEEEEEccC
Confidence 3468999999999999999999999999999999976655432 2233556667775554
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCc---ee
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE---VG 237 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~---~~ 237 (479)
+..+++|+-+|.|+||+..++ .....+.+.-+.|.-+.|+|.+..|+.|+.||.|.+|.+.++...+.+..+.. ..
T Consensus 118 gtlLATGdmsG~v~v~~~stg-~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 118 GTLLATGDMSGKVLVFKVSTG-GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG 196 (399)
T ss_pred ceEEEecCCCccEEEEEcccC-ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence 558999999999999999999 55666666678888999999999999999999999999999877777765433 44
Q ss_pred EEEeCCCEEEEE-cCCeEEEEEcCCCceEEec--CCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcc---cce
Q 011711 238 SLICEGPWVFVG-MPNVVKAWHIESSAEFSLD--GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPF---QLA 309 (479)
Q Consensus 238 ~~~~~~~~l~~~-~~~~i~v~~~~~~~~~~~~--~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~---~~~ 309 (479)
.+.++|+.++++ .|++|++|++.++..+... .......++.++.. .++.|..++.+++-+..+++.... ...
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 577889988876 7899999999999875322 12334455555543 888888888888877665542100 001
Q ss_pred eeecCCCCCeEEEEE---c--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcC-CEEEEEeCCCeEEEEEc
Q 011711 310 ALLKGHTRPVTCLAV---G--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD-QYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 310 ~~~~~h~~~i~~l~~---~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~iwd~ 383 (479)
.....+...+.|+.+ + =.+.++|+.||+|.|||+...++.+... |...|+.+.|.+ .+|++++.+|.|+.||.
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~t~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLNTDYLLTACANGKVRQWDA 355 (399)
T ss_pred cccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcCcchheeeccCceEEeeec
Confidence 111234444555544 3 4578999999999999999877655554 888899999996 89999999999999999
Q ss_pred CCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC
Q 011711 384 TEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 431 (479)
++++.+....+|...+...++ +|+++ ++++++.|++.+||+.+
T Consensus 356 RtG~l~~~y~GH~~~Il~f~l----s~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 356 RTGQLKFTYTGHQMGILDFAL----SPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred cccceEEEEecCchheeEEEE----cCCCc-EEEEecCCCeEEEEecC
Confidence 999999999999988777776 48887 89999999999999875
No 49
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=247.50 Aligned_cols=279 Identities=26% Similarity=0.396 Sum_probs=238.9
Q ss_pred CCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeee-eeecCCCeEEEecc--CCeeE
Q 011711 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRT-LERTTPKNVCYHWL--SGNCV 165 (479)
Q Consensus 89 h~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~c~~~~--~~~~~ 165 (479)
|...+....+. +.++++++.|.++++|+...... ... +.+|.+..-++... .+.++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~-------------------i~~~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL-------------------ILTRLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE-------------------EEeeccCCCCCceeEEEecCCCEEE
Confidence 34455555556 56788888899999997554332 112 34555555555555 88999
Q ss_pred eCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-cCCceeEEEeCCC
Q 011711 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGAEVGSLICEGP 244 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~ 244 (479)
+|+.|++++|||+.++ ++.+.+.+|.+.|.++.. .+.++++||.|.+|++|+++++.++..+. +..++.++..++.
T Consensus 266 sgS~D~t~rvWd~~sg-~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~ 342 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTG-ECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEP 342 (537)
T ss_pred EEecCCcEEeEecCCC-cEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCC
Confidence 9999999999999999 999999999999999986 46678999999999999999999999999 8888999999888
Q ss_pred EEEEE-cCCeEEEEEcCCCceE-EecCCCccEEEEEEcC-CEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 245 WVFVG-MPNVVKAWHIESSAEF-SLDGPVGEVYSMVVAN-EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 245 ~l~~~-~~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
++++| .|+.|++|++.+++.+ .+.+|...|+++.+.+ +.+++|+.|+.|++||+.+.. +++..+.+|..-+.+
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~----~c~~tl~~h~~~v~~ 418 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR----KCIHTLQGHTSLVSS 418 (537)
T ss_pred EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh----hhhhhhcCCcccccc
Confidence 88776 7899999999998876 5789999999999999 899999999999999998862 468899999999999
Q ss_pred EEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeC-CCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccc
Q 011711 322 LAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNG-HTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395 (479)
Q Consensus 322 l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (479)
+.+.++.|++++.|++|++||..++++++++.+ |...+..+......+++++.|+.+++||++++.....+..+
T Consensus 419 l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 419 LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred cccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 999999999999999999999999999999999 66788888777789999999999999999998877766433
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.1e-30 Score=249.42 Aligned_cols=294 Identities=15% Similarity=0.185 Sum_probs=205.7
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccc-cccCcCCCCCeeeeeecCCCeEEEeccCCeeEe
Q 011711 88 NHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLD-CSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVK 166 (479)
Q Consensus 88 gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 166 (479)
.|++.|++++||+||+|||+||+||.||||...+.....-...... ........+. +.......--..-.....-.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~---~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQ---IEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccc---cCcccccccccccccccccc
Confidence 8999999999999999999999999999998887222100000000 0000000000 00000000000000000001
Q ss_pred CCCCCeEEEeecC--CCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCC
Q 011711 167 GDECRFWHSWFCG--EGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (479)
Q Consensus 167 g~~d~~i~vw~~~--~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (479)
+.....+.+-+.. -..++++.|+||.+.|.+|+|+.+ ++|+|+|.|+|||+|++...+++..|.
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~------------- 407 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS------------- 407 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-------------
Confidence 1111111111111 112688999999999999999864 589999999999999999999998886
Q ss_pred EEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
|...|+|++|+|. +|++|+-||+|+||++...+ +.....-..-|++
T Consensus 408 -------------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~------Vv~W~Dl~~lITA 456 (712)
T KOG0283|consen 408 -------------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK------VVDWNDLRDLITA 456 (712)
T ss_pred -------------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCe------eEeehhhhhhhee
Confidence 8889999999975 99999999999999998754 2333334478999
Q ss_pred EEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCC--------CCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcc
Q 011711 322 LAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH--------TDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGN 388 (479)
Q Consensus 322 l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h--------~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~ 388 (479)
+++. |++.++|+.+|.+++|+....+++.....+ ...|+.+.+. .+.+++.+.|..|||||.++...
T Consensus 457 vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l 536 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL 536 (712)
T ss_pred EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhh
Confidence 9995 999999999999999999988877665321 2269999988 35688899999999999988887
Q ss_pred eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 389 LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
+..+.+....... ....++.||+ .|++++.|..|++|+...
T Consensus 537 v~KfKG~~n~~SQ--~~Asfs~Dgk-~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 537 VHKFKGFRNTSSQ--ISASFSSDGK-HIVSASEDSWVYIWKNDS 577 (712)
T ss_pred hhhhcccccCCcc--eeeeEccCCC-EEEEeecCceEEEEeCCC
Confidence 7777766554432 3334467998 888899999999999744
No 51
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.2e-29 Score=211.29 Aligned_cols=282 Identities=16% Similarity=0.197 Sum_probs=234.9
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCe
Q 011711 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (479)
Q Consensus 84 ~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 163 (479)
..+.+|.+++-+++|+.+|.+||+|+.|+++++|+++....
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~--------------------------------------- 54 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF--------------------------------------- 54 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------------------------------
Confidence 46688999999999999999999999999999996443211
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeC
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
..-..+.+|.+.|-.++|+| ..+.|++++.|++|++||+..+++...+...
T Consensus 55 -------------------~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~--------- 106 (313)
T KOG1407|consen 55 -------------------RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK--------- 106 (313)
T ss_pred -------------------hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc---------
Confidence 11223578999999999965 5678999999999999999999998776532
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeE
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~ 320 (479)
+.-.-+.|+|+ +++++..|..|...|.++... .. -......+.
T Consensus 107 -----------------------------~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~-----~~-~~~~~~e~n 151 (313)
T KOG1407|consen 107 -----------------------------GENINITWSPDGEYIAVGNKDDRITFIDARTYKI-----VN-EEQFKFEVN 151 (313)
T ss_pred -----------------------------CcceEEEEcCCCCEEEEecCcccEEEEEecccce-----ee-hhcccceee
Confidence 22234556665 999999999999999887542 22 233455677
Q ss_pred EEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEecccc
Q 011711 321 CLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN 396 (479)
Q Consensus 321 ~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 396 (479)
.++|+ +++++.-...|+|.|......++++++++|.....++.++ |+++++|+.|-.+.+||++..-+++.+..+.
T Consensus 152 e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld 231 (313)
T KOG1407|consen 152 EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD 231 (313)
T ss_pred eeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc
Confidence 78886 6777777777999999999999999999999999999998 8999999999999999999998889999898
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCC---------CcEE
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGT---------GMLS 466 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~d---------g~v~ 466 (479)
-++..++|+ .+|+ +|++++.|..|-|=++++|..+..+.+.++...++|+|.. +|+-+++| |.|+
T Consensus 232 wpVRTlSFS----~dg~-~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vK 306 (313)
T KOG1407|consen 232 WPVRTLSFS----HDGR-MLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVK 306 (313)
T ss_pred CceEEEEec----cCcc-eeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeE
Confidence 888888884 8898 9999999999999999999999999999999999999999 77766553 6788
Q ss_pred EEEecc
Q 011711 467 VWKILA 472 (479)
Q Consensus 467 vw~~~~ 472 (479)
+|-+.+
T Consensus 307 iFG~~~ 312 (313)
T KOG1407|consen 307 IFGLSN 312 (313)
T ss_pred EecCCC
Confidence 876653
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.4e-29 Score=240.76 Aligned_cols=313 Identities=19% Similarity=0.307 Sum_probs=244.5
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEe
Q 011711 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVK 166 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 166 (479)
+--+..+.+++|.|.--++.++--.|.|++||-+=... ...++.+.| +...++|++.+..+++
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl----i~rFdeHdG-------------pVRgv~FH~~qplFVS 68 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL----IDRFDEHDG-------------PVRGVDFHPTQPLFVS 68 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhH----HhhhhccCC-------------ccceeeecCCCCeEEe
Confidence 33456789999999999999999999999997432211 111222223 3368999999999999
Q ss_pred CCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEE
Q 011711 167 GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWV 246 (479)
Q Consensus 167 g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (479)
|++|..|+||+.++. +++.++.||-+-|..+.|++.-..++|+|.|.+|+||+.++++++..+.
T Consensus 69 GGDDykIkVWnYk~r-rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt--------------- 132 (1202)
T KOG0292|consen 69 GGDDYKIKVWNYKTR-RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT--------------- 132 (1202)
T ss_pred cCCccEEEEEecccc-eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe---------------
Confidence 999999999999988 8999999999999999999999999999999999999999999987664
Q ss_pred EEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCC---c----------------
Q 011711 247 FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQN---P---------------- 305 (479)
Q Consensus 247 ~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~---~---------------- 305 (479)
+|...|.|..|+|. .+++++-|.+|++||+..-... +
T Consensus 133 ----------------------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dL 190 (1202)
T KOG0292|consen 133 ----------------------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDL 190 (1202)
T ss_pred ----------------------cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhh
Confidence 68888899999884 8999999999999997532110 0
Q ss_pred -----ccceeeecCCCCCeEEEEEcC--CEEEEEeCCCeEEEEECCCCcE--EEEEeCCCCCcEEEEEcC--CEEEEEeC
Q 011711 306 -----FQLAALLKGHTRPVTCLAVGG--KRLYSGSMDNTIRVWDLDTLEA--VMTLNGHTDAPMSLLCWD--QYLLSCSL 374 (479)
Q Consensus 306 -----~~~~~~~~~h~~~i~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~--~~~~~~h~~~v~~~~~~~--~~l~s~s~ 374 (479)
.-....+.+|...|+-++|++ ..+++|+.|..|++|.+..-+. +.+..+|.+.|.++.|++ +.+++.++
T Consensus 191 fg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsE 270 (1202)
T KOG0292|consen 191 FGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSE 270 (1202)
T ss_pred cCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCC
Confidence 112356789999999999995 7899999999999999876443 456789999999999995 89999999
Q ss_pred CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc
Q 011711 375 DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG 454 (479)
Q Consensus 375 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g 454 (479)
|++|+|||+.....++.+...+.....++. +|..+ ++++| .|+-+.+|.++...+ +.+.+.++
T Consensus 271 DksirVwDm~kRt~v~tfrrendRFW~laa----hP~lN-LfAAg-HDsGm~VFkleRErp-----------a~~v~~n~ 333 (1202)
T KOG0292|consen 271 DKSIRVWDMTKRTSVQTFRRENDRFWILAA----HPELN-LFAAG-HDSGMIVFKLERERP-----------AYAVNGNG 333 (1202)
T ss_pred CccEEEEecccccceeeeeccCCeEEEEEe----cCCcc-eeeee-cCCceEEEEEcccCc-----------eEEEcCCE
Confidence 999999999998888887766665544444 58887 66655 677788887754322 23333333
Q ss_pred eEEEEcCCCcEEEEEeccC
Q 011711 455 LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 455 ~l~sg~~dg~v~vw~~~~~ 473 (479)
++..- |..|+-+|+.+.
T Consensus 334 LfYvk--d~~i~~~d~~t~ 350 (1202)
T KOG0292|consen 334 LFYVK--DRFIRSYDLRTQ 350 (1202)
T ss_pred EEEEc--cceEEeeecccc
Confidence 33332 666666666653
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.6e-29 Score=243.51 Aligned_cols=273 Identities=19% Similarity=0.363 Sum_probs=236.6
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
..+.|+|...-++++-..|.|.+||..-+ .++..|.+|.++|..++|+|++.+++||+.|-.|+||+..+.+++.
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf---- 87 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMG-TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF---- 87 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhh-hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh----
Confidence 57889999999999999999999999988 8999999999999999999999999999999999999999888764
Q ss_pred CCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCccccee
Q 011711 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (479)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 310 (479)
++.+|...|..+.|++. .|++++.|.+|+||+..+.+ ++.
T Consensus 88 ---------------------------------tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-----~ia 129 (1202)
T KOG0292|consen 88 ---------------------------------TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-----CIA 129 (1202)
T ss_pred ---------------------------------hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-----eEE
Confidence 44589999999999998 99999999999999998865 488
Q ss_pred eecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCc-----------------------------EEEEEeCCCCCc
Q 011711 311 LLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLE-----------------------------AVMTLNGHTDAP 359 (479)
Q Consensus 311 ~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-----------------------------~~~~~~~h~~~v 359 (479)
.+.+|...|.|..|+ ...++++|-|.+|++||+...+ ..+.+.+|...|
T Consensus 130 vltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGV 209 (1202)
T KOG0292|consen 130 VLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGV 209 (1202)
T ss_pred EEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccccc
Confidence 999999999999998 7899999999999999985210 124567999999
Q ss_pred EEEEEcC--CEEEEEeCCCeEEEEEcCCCcc--eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCce
Q 011711 360 MSLLCWD--QYLLSCSLDNTIKVWIMTEEGN--LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFME 435 (479)
Q Consensus 360 ~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 435 (479)
..++|.+ ..+++|+.|..|++|.+...+. +....+|...+.++.+ +|..+ ++++.+.|++|++||+.....
T Consensus 210 NwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlf----hp~q~-lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 210 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLF----HPHQD-LILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred ceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEe----cCccc-eeEecCCCccEEEEecccccc
Confidence 9999997 7999999999999999876553 2344556666666555 57766 899999999999999999998
Q ss_pred eeeeec-cCceEEEEECCCceEEEEcCCCcEEEEEeccC
Q 011711 436 RGRIFS-RREVRVIETGPDGLFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 436 ~~~~~~-~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~ 473 (479)
+..+.. ++..+.++.+|..-|++++.|+-+.||.++..
T Consensus 285 v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRE 323 (1202)
T KOG0292|consen 285 VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERE 323 (1202)
T ss_pred eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEccc
Confidence 888876 77899999999996666667777889999844
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=6.2e-29 Score=219.90 Aligned_cols=272 Identities=22% Similarity=0.288 Sum_probs=220.2
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeC---CCCCEEEEEeCCCcEEEEECCCCceEEEEecCCcee
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALP---LRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG 237 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s---~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~ 237 (479)
...+++|+.||.+++||.. | +....+.||.++|.+++|. +....|+++|.|.++++|..+.++......
T Consensus 115 ~~~IltgsYDg~~riWd~~-G-k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~------ 186 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-G-KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL------ 186 (423)
T ss_pred CceEEEeecCCeeEEEecC-C-ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH------
Confidence 5688999999999999984 4 6788999999999999983 333469999999999999988765432211
Q ss_pred EEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCC------------
Q 011711 238 SLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ------------ 303 (479)
Q Consensus 238 ~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~------------ 303 (479)
....+|...|.++...++ .+++|+.|.+|.+|+......
T Consensus 187 ---------------------------~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk 239 (423)
T KOG0313|consen 187 ---------------------------KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRK 239 (423)
T ss_pred ---------------------------hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhh
Confidence 122389999999998877 999999999999999322110
Q ss_pred --------CcccceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEE
Q 011711 304 --------NPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSC 372 (479)
Q Consensus 304 --------~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 372 (479)
....++..+.+|..+|.++.|+ ...+++++.|.+|+.||+.++..+.++... ....++... .++|++|
T Consensus 240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~g 318 (423)
T KOG0313|consen 240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASG 318 (423)
T ss_pred hhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeec
Confidence 1134567789999999999997 788999999999999999999998888754 346677766 6899999
Q ss_pred eCCCeEEEEEcCCCcc---eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc-eeeeee-ccCceEE
Q 011711 373 SLDNTIKVWIMTEEGN---LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM-ERGRIF-SRREVRV 447 (479)
Q Consensus 373 s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~-~~~~v~~ 447 (479)
+.|..|++||.+++.- .+.+.+|+.-+..+. |+|...++|++++.|+++++||+++.+ ++..+. |.+.|.+
T Consensus 319 ssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvk----wsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~ 394 (423)
T KOG0313|consen 319 SSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVK----WSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLS 394 (423)
T ss_pred CCCCceeecCCCCCCCceeEEeeecchhhhhhee----cCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEE
Confidence 9999999999998753 344555666544444 469999999999999999999999877 677665 5788999
Q ss_pred EEECCCceEEEEcCCCcEEEEEecc
Q 011711 448 IETGPDGLFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 448 l~~s~~g~l~sg~~dg~v~vw~~~~ 472 (479)
+.|...+.+++||.|.+|+|+.-..
T Consensus 395 vdW~~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 395 VDWNEGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred EeccCCceEEeccCcceEEEecccc
Confidence 9999877999999999999997543
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=5.9e-29 Score=220.00 Aligned_cols=274 Identities=20% Similarity=0.286 Sum_probs=215.8
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEe-----ccC
Q 011711 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYH-----WLS 161 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-----~~~ 161 (479)
.-|.+-|.+++.. ++++.||++||++|||++.+... .++.+|.+...... ...
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~--------------------~~~~Ght~~ik~v~~v~~n~~~ 159 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI--------------------KTIVGHTGPIKSVAWVIKNSSS 159 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCCceE--------------------EEEecCCcceeeeEEEecCCcc
Confidence 4577888888877 88999999999999998665432 12222222222111 112
Q ss_pred CeeEeCCCCCeEEEeecCCCc---eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCC--------------
Q 011711 162 GNCVKGDECRFWHSWFCGEGF---TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-------------- 224 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~---~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~-------------- 224 (479)
..+++++.|.++++|..+.+. +.++.-+||+..|.+++..++|..+++||.|.+|+||+..+.
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk 239 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRK 239 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhh
Confidence 269999999999999998762 334455699999999999999999999999999999993221
Q ss_pred -----------ceEEEEe-cCCceeEEEe-C-CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEe
Q 011711 225 -----------QSASVIN-LGAEVGSLIC-E-GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA 288 (479)
Q Consensus 225 -----------~~~~~~~-~~~~~~~~~~-~-~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~ 288 (479)
.++..+. +..++.++.+ + +..+.++.|.+|+.||++++...........++++.+.+. +|++|+
T Consensus 240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gs 319 (423)
T KOG0313|consen 240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGS 319 (423)
T ss_pred hhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecC
Confidence 1111222 2233445544 3 3344567999999999999999877777888999999987 999999
Q ss_pred CCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCc-EEEEEeCCCCCcEEEEE
Q 011711 289 QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLE-AVMTLNGHTDAPMSLLC 364 (479)
Q Consensus 289 ~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~h~~~v~~~~~ 364 (479)
.|..+++||.+++.. .-..+.+.+|+.-|.++.|+ ..+|++|+.|+++++||+++.+ ++..+.+|.+.|.++.|
T Consensus 320 sdr~irl~DPR~~~g--s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW 397 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDG--SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW 397 (423)
T ss_pred CCCceeecCCCCCCC--ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEec
Confidence 999999999998854 34567889999999999997 6779999999999999999987 99999999999999999
Q ss_pred c-CCEEEEEeCCCeEEEEEcC
Q 011711 365 W-DQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 365 ~-~~~l~s~s~dg~i~iwd~~ 384 (479)
+ +..|++|+.|.+|+|+.-.
T Consensus 398 ~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 398 NEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCceEEeccCcceEEEeccc
Confidence 9 6699999999999998643
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=9.7e-30 Score=219.28 Aligned_cols=311 Identities=19% Similarity=0.228 Sum_probs=236.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccC
Q 011711 82 QTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (479)
Q Consensus 82 p~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 161 (479)
...-+.-|+.+....+||+||.++|+||.|-+|+|.+.+.-.. +..+.....
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermla---ks~~~em~~------------------------- 155 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLA---KSKPKEMIS------------------------- 155 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhh---hcchhhhcc-------------------------
Confidence 3445578999999999999999999999999999997663211 000000000
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 241 (479)
|+ .......+++|-.|.+.|+++.|+|....|++++.|++|+++|...-...+.++
T Consensus 156 -----~~---------~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K---------- 211 (430)
T KOG0640|consen 156 -----GD---------TQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFK---------- 211 (430)
T ss_pred -----CC---------cccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHH----------
Confidence 10 011125788999999999999999999999999999999999987543322221
Q ss_pred CCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCe
Q 011711 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (479)
Q Consensus 242 ~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i 319 (479)
.......|.++.|+|. +|++|..-..+++||+++-+. +.....-..|.+.|
T Consensus 212 -------------------------~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc--fvsanPd~qht~ai 264 (430)
T KOG0640|consen 212 -------------------------VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC--FVSANPDDQHTGAI 264 (430)
T ss_pred -------------------------HhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE--eeecCcccccccce
Confidence 1224456888888876 999999999999999988653 22233346799999
Q ss_pred EEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCCC-cEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEec
Q 011711 320 TCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDA-PMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (479)
Q Consensus 320 ~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~-v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (479)
+++.++ +++.++|+.||.|++||--+++++.++. +|.+. |.+..|. ++++++.+.|..+++|.+.++..+....
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 999997 8999999999999999999999999984 56554 5666665 8999999999999999999999888776
Q ss_pred cccCc-cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee--eccCceEEEEECCCc-eEEEEcCCCcEEEEE
Q 011711 394 THNED-HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI--FSRREVRVIETGPDG-LFFTGDGTGMLSVWK 469 (479)
Q Consensus 394 ~~~~~-~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~ 469 (479)
+.... .........++....++|.---..+.+.-||.++...+..+ .|.+.++.+.-+|.+ .|++|+.|-.+++|-
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 54211 11122233345666655555556688999999987765444 578999999999999 999999999999997
Q ss_pred ec
Q 011711 470 IL 471 (479)
Q Consensus 470 ~~ 471 (479)
-.
T Consensus 425 rr 426 (430)
T KOG0640|consen 425 RR 426 (430)
T ss_pred ec
Confidence 54
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.3e-28 Score=204.57 Aligned_cols=285 Identities=19% Similarity=0.238 Sum_probs=217.7
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCee
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 164 (479)
.+.||..+++.++++.+|..|.|++.|.+..||
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw----------------------------------------------- 37 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVW----------------------------------------------- 37 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEE-----------------------------------------------
Confidence 458899999999999999999999988877777
Q ss_pred EeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCC
Q 011711 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (479)
-..++ +.+-++.||+++|.++..+-+.++|+||+.|.++++||+++|+++..++.+.++.
T Consensus 38 ------------~s~nG-erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk------- 97 (327)
T KOG0643|consen 38 ------------YSLNG-ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK------- 97 (327)
T ss_pred ------------EecCC-ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE-------
Confidence 22233 6788999999999999999999999999999999999999999999887655543
Q ss_pred EEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEE-----eCCCcEEEEEccCCCC--CcccceeeecCC
Q 011711 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAG-----AQDGNILVWKGIPNTQ--NPFQLAALLKGH 315 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g-----~~dg~i~iwd~~~~~~--~~~~~~~~~~~h 315 (479)
.+.|+.+ +++.. +..+.|.++|++.... ...++...+..+
T Consensus 98 -------------------------------~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 98 -------------------------------RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred -------------------------------EEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 3444433 22222 2345688888874331 113456677788
Q ss_pred CCCeEEEEEc--CCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceE
Q 011711 316 TRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLE 390 (479)
Q Consensus 316 ~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (479)
.+.++..-|+ ++.+++|..||.|.+||++++ +.+.....|...|..+.++ ..++++++.|.+-++||+.+-+.+.
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE
Confidence 8999999997 999999999999999999997 5566778899999999988 6799999999999999998876654
Q ss_pred EeccccCccceEEEeeeeCCCCCcEEEEEeCCCe-EEEeecCCC------------ceeeeee-ccCceEEEEECCCc-e
Q 011711 391 VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS-VHLYELPSF------------MERGRIF-SRREVRVIETGPDG-L 455 (479)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~-v~iwd~~~~------------~~~~~~~-~~~~v~~l~~s~~g-~ 455 (479)
.. ....+++..++. |-...+++.|+.+.. |.-=+.+.+ +++.... |-++|++++|+|+| .
T Consensus 227 ty-~te~PvN~aais----P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks 301 (327)
T KOG0643|consen 227 TY-TTERPVNTAAIS----PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS 301 (327)
T ss_pred Ee-eecccccceecc----cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc
Confidence 44 445566666664 766645555554421 222222222 3333333 46899999999999 9
Q ss_pred EEEEcCCCcEEEEEecc
Q 011711 456 FFTGDGTGMLSVWKILA 472 (479)
Q Consensus 456 l~sg~~dg~v~vw~~~~ 472 (479)
.++|++||.|++.-+..
T Consensus 302 YsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 302 YSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccCCCCceEEEEEecc
Confidence 99999999999987754
No 58
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=2.3e-29 Score=224.52 Aligned_cols=232 Identities=22% Similarity=0.369 Sum_probs=204.0
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCC
Q 011711 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPV 271 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~ 271 (479)
+.+|..+.|.|+|+.|++|+..|.+.+|+..+- ++ +..++.|.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---------------------------------nF----EtilQaHD 138 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---------------------------------NF----ETILQAHD 138 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee---------------------------------eH----HHHhhhhc
Confidence 467999999999999999999999999996321 11 12346799
Q ss_pred ccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCC-CCeEEEEEc--CCEEEEEeCCCeEEEEECCCC
Q 011711 272 GEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT-RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL 346 (479)
Q Consensus 272 ~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~-~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~ 346 (479)
..|.++.|+.+ .+++|..+|.|++|+.+.+. +..+++|. ..|++++|+ ...|++++.||+|+|||....
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred ccceeEEEccCCCEEEEcCCCceEEecccchhh------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 99999999977 99999999999999987653 44555555 899999997 788999999999999999999
Q ss_pred cEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCe
Q 011711 347 EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS 424 (479)
Q Consensus 347 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 424 (479)
+....+.+|.-.|.++.|+ ...|++++.|+.|++||.+++.++..+..|+..+..+.+ +++++ +|++++.|..
T Consensus 213 kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f----~~n~N-~Llt~skD~~ 287 (464)
T KOG0284|consen 213 KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKF----NPNGN-WLLTGSKDQS 287 (464)
T ss_pred chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEE----cCCCC-eeEEccCCce
Confidence 9999999999999999999 468999999999999999999999999888876655555 59996 9999999999
Q ss_pred EEEeecCCCceeeeee-ccCceEEEEECCCc--eEEEEcCCCcEEEEEec
Q 011711 425 VHLYELPSFMERGRIF-SRREVRVIETGPDG--LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 425 v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~ 471 (479)
++++|+++.+++..+. |+..|+++.|+|-. +|.+|+.||.|..|.+.
T Consensus 288 ~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 288 CKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred EEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 9999999998888887 78999999999966 99999999999999998
No 59
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=3.6e-28 Score=208.89 Aligned_cols=243 Identities=22% Similarity=0.370 Sum_probs=205.9
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCC
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS 262 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~ 262 (479)
.++..+.+|++.|..+.|+|+|..||||+.|..|.+|++.... .
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-e----------------------------------- 81 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-E----------------------------------- 81 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-c-----------------------------------
Confidence 4566788999999999999999999999999999999965321 1
Q ss_pred ceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCe
Q 011711 263 AEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNT 337 (479)
Q Consensus 263 ~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~ 337 (479)
....+.+|.+.|..+.+..+ .+++++.|.+|+.||+++++. ....++|..-|+++... ..++.+++.|++
T Consensus 82 N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~-----~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t 156 (338)
T KOG0265|consen 82 NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR-----IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT 156 (338)
T ss_pred ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee-----eehhccccceeeecCccccCCeEEEecCCCce
Confidence 11245589999999999877 999999999999999999864 77889999999999875 556788999999
Q ss_pred EEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcE
Q 011711 338 IRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPV 415 (479)
Q Consensus 338 I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (479)
+++||+++.+.++++.. .-+++++.|. ++.+++|+-|+.|++||++.+.....+.+|...+..+..+ |+|. +
T Consensus 157 ~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls----~~gs-~ 230 (338)
T KOG0265|consen 157 LKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLS----RYGS-F 230 (338)
T ss_pred EEEEeecccchhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEec----cCCC-c
Confidence 99999999988888763 3457888887 6899999999999999999999999999999988888774 9998 7
Q ss_pred EEEEeCCCeEEEeecCCCceeee----eec-----cCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 416 LICSCNDDSVHLYELPSFMERGR----IFS-----RREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 416 l~s~~~dg~v~iwd~~~~~~~~~----~~~-----~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
+.+-+.|.++++||++....-.+ +.. +......+|+|++ .+.+|+.|..+++||...
T Consensus 231 llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 231 LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 88889999999999976543332 222 4557788999999 899999999999999765
No 60
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-28 Score=230.24 Aligned_cols=323 Identities=20% Similarity=0.289 Sum_probs=241.0
Q ss_pred CCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecC--CCeEEEeccCCeeEeCCCCCeEEEe
Q 011711 99 PKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTT--PKNVCYHWLSGNCVKGDECRFWHSW 176 (479)
Q Consensus 99 s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~c~~~~~~~~~~g~~d~~i~vw 176 (479)
-|+++||.|||.||+|++|+...-....... ....++.|. ...+...-.+..+++++.|-+|++|
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W 100 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVW 100 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccc-------------hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEe
Confidence 4677789999999999999766543210000 000111111 1122233345589999999999999
Q ss_pred ecCCCc-eeeEEEecccccEEEEEe-CCCCCEEEEEeCCCcEEEEECCCCce--EEEEecCCceeEEEeCCCEEEEEcCC
Q 011711 177 FCGEGF-TMLAKLEGHKKAVSGIAL-PLRSDKLYSGSRDGTVQLWDCHTGQS--ASVINLGAEVGSLICEGPWVFVGMPN 252 (479)
Q Consensus 177 ~~~~~~-~~~~~~~~H~~~V~~l~~-s~~~~~l~s~s~Dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (479)
+...+. -+..++..|++-|.|+++ -++...+|||+.|+.|.+||++++.. +..+..
T Consensus 101 ~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~-------------------- 160 (735)
T KOG0308|consen 101 NAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN-------------------- 160 (735)
T ss_pred ecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc--------------------
Confidence 998764 567788999999999999 88899999999999999999998843 322221
Q ss_pred eEEEEEcCCCceEEec-CCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CC
Q 011711 253 VVKAWHIESSAEFSLD-GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GK 327 (479)
Q Consensus 253 ~i~v~~~~~~~~~~~~-~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~ 327 (479)
-....+. ++...|++++.++. .|++|+..+.+++||.++... +..+++|...|.++..+ |.
T Consensus 161 ---------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k-----imkLrGHTdNVr~ll~~dDGt 226 (735)
T KOG0308|consen 161 ---------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK-----IMKLRGHTDNVRVLLVNDDGT 226 (735)
T ss_pred ---------cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc-----eeeeeccccceEEEEEcCCCC
Confidence 0001122 78899999999988 899999999999999998754 66678999999999996 99
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcC--CEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEe
Q 011711 328 RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD--QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALG 405 (479)
Q Consensus 328 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 405 (479)
.+++++.||+|++||+...+++.++..|...|.++..+. +.+++|+.||.|..=|+++......+.....++..+...
T Consensus 227 ~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~ 306 (735)
T KOG0308|consen 227 RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLH 306 (735)
T ss_pred eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhc
Confidence 999999999999999999999999999999999999885 579999999999999999976666676666666555552
Q ss_pred eeeCCCCCcEEEEEeCCCeEEEeecCCCc-------eee------------------eeeccCceEEEEECCCc-eEEEE
Q 011711 406 GLNDPDGNPVLICSCNDDSVHLYELPSFM-------ERG------------------RIFSRREVRVIETGPDG-LFFTG 459 (479)
Q Consensus 406 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-------~~~------------------~~~~~~~v~~l~~s~~g-~l~sg 459 (479)
...+. +-+++.|+.|+-|..+-.. ... .+.+..++..-++-.|. .++|=
T Consensus 307 ----~~~~~-~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTk 381 (735)
T KOG0308|consen 307 ----EHDNS-VWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTK 381 (735)
T ss_pred ----cccCC-ceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeee
Confidence 22222 3556788999998654211 110 11122334444455566 89999
Q ss_pred cCCCcEEEEEeccC
Q 011711 460 DGTGMLSVWKILAK 473 (479)
Q Consensus 460 ~~dg~v~vw~~~~~ 473 (479)
...|.+.+||+-..
T Consensus 382 Da~gnv~lwDIl~~ 395 (735)
T KOG0308|consen 382 DAKGNVALWDILAC 395 (735)
T ss_pred cCCCCEEEEEeeee
Confidence 99999999998654
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-27 Score=224.30 Aligned_cols=271 Identities=22% Similarity=0.346 Sum_probs=227.4
Q ss_pred eccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCcee
Q 011711 158 HWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG 237 (479)
Q Consensus 158 ~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~ 237 (479)
.|.....++-+....+.+|+..++ +.......+...|+++.|+++|.+|+.|..+|.|.|||..+.+.+..+..
T Consensus 184 dWss~n~laValg~~vylW~~~s~-~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~----- 257 (484)
T KOG0305|consen 184 DWSSANVLAVALGQSVYLWSASSG-SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG----- 257 (484)
T ss_pred hcccCCeEEEEecceEEEEecCCC-ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-----
Confidence 455556666667789999999988 44555555589999999999999999999999999999988777655431
Q ss_pred EEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC
Q 011711 238 SLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (479)
Q Consensus 238 ~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~ 317 (479)
.|...|-+++|....+.+|+.|+.|..+|++.... ....+.+|..
T Consensus 258 -------------------------------~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~----~~~~~~~H~q 302 (484)
T KOG0305|consen 258 -------------------------------SHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQH----VVSTLQGHRQ 302 (484)
T ss_pred -------------------------------CcCceeEEEeccCceEEEecCCCcEEEEEEecchh----hhhhhhcccc
Confidence 28889999999999999999999999999998754 2335889999
Q ss_pred CeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc---CCEEEEEe--CCCeEEEEEcCCCcceE
Q 011711 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYLLSCS--LDNTIKVWIMTEEGNLE 390 (479)
Q Consensus 318 ~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s--~dg~i~iwd~~~~~~~~ 390 (479)
.|+.+.|+ +.++++|+.|+.+.|||....+++..+..|...|.+++|. ...||+|+ .|+.|++||..++..+.
T Consensus 303 eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~ 382 (484)
T KOG0305|consen 303 EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID 382 (484)
T ss_pred eeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec
Confidence 99999996 9999999999999999999999999999999999999998 57888865 49999999999887766
Q ss_pred EeccccCccceEEEeeeeCCCCCcEEEEE-eCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEE
Q 011711 391 VAYTHNEDHGVLALGGLNDPDGNPVLICS-CNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSV 467 (479)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~v 467 (479)
.+.... ....+.|++..+.++.+. ..++.|.||+.++.+.+..+. |...|..++++||| .+++|+.|.++++
T Consensus 383 ~vdtgs-----QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 383 SVDTGS-----QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRF 457 (484)
T ss_pred ccccCC-----ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEe
Confidence 555432 234555678776555554 467889999999988888776 57889999999999 9999999999999
Q ss_pred EEeccCC
Q 011711 468 WKILAKP 474 (479)
Q Consensus 468 w~~~~~~ 474 (479)
|++-...
T Consensus 458 w~~f~~~ 464 (484)
T KOG0305|consen 458 WNLFDER 464 (484)
T ss_pred ccccCCC
Confidence 9987643
No 62
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=4.2e-28 Score=241.33 Aligned_cols=317 Identities=19% Similarity=0.208 Sum_probs=242.3
Q ss_pred CCCCCC-CCCCCCCCCCCceeccCCC--CCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccC
Q 011711 85 PVSNHK-KSPPSYNCPKNNVRVSSGS--EEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (479)
Q Consensus 85 ~~~gh~-~~i~~~~~s~~g~~las~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 161 (479)
++.+|. .+|.+++++|||..+|+|+ .||.++||+.+.-..
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~------------------------------------- 49 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD------------------------------------- 49 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccc-------------------------------------
Confidence 344444 4578999999999999999 999999996433211
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 241 (479)
...-++.. -.+.+.+...|.+.|+|+.|++||++||+||+|+.|.||+....-.-..+..
T Consensus 50 ----------~~~~~~~~-l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs--------- 109 (942)
T KOG0973|consen 50 ----------EKEEKNEN-LPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGS--------- 109 (942)
T ss_pred ----------hhhhhhcc-cchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccc---------
Confidence 00111111 1256788889999999999999999999999999999999764100000000
Q ss_pred CCCEEEEEcCCeEEEEEcCCCc-eEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 242 EGPWVFVGMPNVVKAWHIESSA-EFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 242 ~~~~l~~~~~~~i~v~~~~~~~-~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
++... +.+.-+ ...+.+|...|..++|+|+ ++++++.|++|.+|+..+ ++.+..+.+|...
T Consensus 110 ------~g~~~-----~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-----F~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 110 ------TGGAK-----NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-----FELLKVLRGHQSL 173 (942)
T ss_pred ------ccccc-----ccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc-----ceeeeeeeccccc
Confidence 00001 111111 2357789999999999988 999999999999999887 4568999999999
Q ss_pred eEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCC------cEEEEEc--CCEEEEEeC----CCeEEEEEcC
Q 011711 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA------PMSLLCW--DQYLLSCSL----DNTIKVWIMT 384 (479)
Q Consensus 319 i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~------v~~~~~~--~~~l~s~s~----dg~i~iwd~~ 384 (479)
|..+.|+ |++|++-+.|++|++|++.+....+.+..+-.. ...+.|+ |++|++... -.++.|.+-.
T Consensus 174 VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~ 253 (942)
T KOG0973|consen 174 VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG 253 (942)
T ss_pred ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC
Confidence 9999999 999999999999999998888888888766442 3455555 788887654 3468888877
Q ss_pred CCcceEEeccccCccceEEEeeeeCCC----CC--------cEEEEEeCCCeEEEeecCCCceeeeeec--cCceEEEEE
Q 011711 385 EEGNLEVAYTHNEDHGVLALGGLNDPD----GN--------PVLICSCNDDSVHLYELPSFMERGRIFS--RREVRVIET 450 (479)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~l~~ 450 (479)
+.+.-..+.+|..+..++.+....-.+ |. .++|+|+.|++|-||.....+++..+.+ ...|..|+|
T Consensus 254 tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsW 333 (942)
T KOG0973|consen 254 TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSW 333 (942)
T ss_pred CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeE
Confidence 777677888899988888775332111 11 1789999999999999988888777765 789999999
Q ss_pred CCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 451 GPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 451 s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
+||| .|++++.||+|.+..+++++
T Consensus 334 spdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 334 SPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred cCCCCeEEEEecCCeEEEEEcchHH
Confidence 9999 99999999999999998754
No 63
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2.1e-27 Score=225.08 Aligned_cols=275 Identities=24% Similarity=0.375 Sum_probs=229.0
Q ss_pred CceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE-------e-CCCEEEEEcCC
Q 011711 181 GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI-------C-EGPWVFVGMPN 252 (479)
Q Consensus 181 ~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~-------~-~~~~l~~~~~~ 252 (479)
.+++-+.+.||+..|..+++.+ +..++++|.||++++|+-..++.+.......+...+. + .+++++.+.|.
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 3477889999999999999764 4479999999999999987777665444333322222 1 34577778999
Q ss_pred eEEEEEcCCCceE-EecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-CCEE
Q 011711 253 VVKAWHIESSAEF-SLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRL 329 (479)
Q Consensus 253 ~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l 329 (479)
.|.+|...+...+ .+.+|...|.++....+ .+++|+.|.++++|.... +...+++|+.+|.++..- .+.+
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~-------l~~~l~gH~asVWAv~~l~e~~~ 154 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE-------LVYSLQGHTASVWAVASLPENTY 154 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh-------hhcccCCcchheeeeeecCCCcE
Confidence 9999999888764 78899999999997766 789999999999998644 355689999999998874 6799
Q ss_pred EEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcC-CEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeee
Q 011711 330 YSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD-QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLN 408 (479)
Q Consensus 330 ~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (479)
+||+.|.+|++|.- ++++++|.+|.+.|..++.-+ ..+++++.||.|+.|++ +++.+....+|..-+.++...
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~--- 228 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMA--- 228 (745)
T ss_pred EeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEec---
Confidence 99999999999975 789999999999999999884 59999999999999999 678888888888777666642
Q ss_pred CCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccC-ceEEEEECCCceEEEEcCCCcEEEEEeccC
Q 011711 409 DPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRR-EVRVIETGPDGLFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 409 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~ 473 (479)
+++. ++++.+.|++++||+.. ++...+.+.. .|+++.+-++|-+++|++||.|+||.....
T Consensus 229 -~~~~-~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 229 -LSDG-LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred -CCCC-eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEeccc
Confidence 5555 79999999999999987 6777777744 899999999999999999999999998754
No 64
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=6.6e-28 Score=228.49 Aligned_cols=275 Identities=24% Similarity=0.367 Sum_probs=216.5
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEecc-CCe
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWL-SGN 163 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~ 163 (479)
.+.||+..|..+++.++. .++++|.||++++|+..+..... .+ .... ..+-....+|+... ..+
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~---~~----~~~~-------~~g~i~~~i~y~e~~~~~ 73 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLE---TH----AFEG-------PKGFIANSICYAESDKGR 73 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccc---ce----eccc-------CcceeeccceeccccCcc
Confidence 468899998877765554 78899999999999765543311 00 0000 00111224777753 346
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCC
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
++.|+.|.+|.+|..... .++..|+||++.|.+++...++. ++|||.|.++++|-...- .
T Consensus 74 l~~g~~D~~i~v~~~~~~-~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~---------------- 133 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQA-EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--V---------------- 133 (745)
T ss_pred eEeecccceEEEEecCCC-CchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--h----------------
Confidence 999999999999999888 89999999999999999877777 999999999999986432 1
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEE
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l 322 (479)
..+++|...|+++..-|+ .+++|+.|..|++|.-.+ .+.++.+|.+-|..+
T Consensus 134 ---------------------~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~-------~l~tf~gHtD~VRgL 185 (745)
T KOG0301|consen 134 ---------------------YSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGT-------LLKTFSGHTDCVRGL 185 (745)
T ss_pred ---------------------cccCCcchheeeeeecCCCcEEeccCcceeeeccCCc-------hhhhhccchhheeee
Confidence 235689999999998877 999999999999998533 478899999999999
Q ss_pred EEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCcc
Q 011711 323 AVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDH 399 (479)
Q Consensus 323 ~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 399 (479)
++- +..|++++.||.|++|++ +++++.++.+|+..+.++... +..++++++|++++||+.. .+.+.+......+
T Consensus 186 ~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsi 262 (745)
T KOG0301|consen 186 AVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSI 262 (745)
T ss_pred EEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccce
Confidence 984 779999999999999999 889999999999999999844 7899999999999999876 4455554443333
Q ss_pred ceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC
Q 011711 400 GVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 431 (479)
....+ -++|. +++|+.||.|+||...
T Consensus 263 Wsa~~----L~NgD--Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 263 WSAKV----LLNGD--IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEEE----eeCCC--EEEeccCceEEEEEec
Confidence 33333 36777 7889999999999876
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.5e-28 Score=213.09 Aligned_cols=280 Identities=19% Similarity=0.281 Sum_probs=233.3
Q ss_pred eeeeecCCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeE--------EEecccccEEEEEeCCCCCEEEEEeCCCcE
Q 011711 145 RTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLA--------KLEGHKKAVSGIALPLRSDKLYSGSRDGTV 216 (479)
Q Consensus 145 ~~~~~~~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~--------~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v 216 (479)
+...+.-.++.-|.+.+..+++|+.||.|.||+..++ ++.+ .|.-|..+|.|++|+.|...||+|+.||.|
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~G-KlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTG-KLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccc-hhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 3334555567778999999999999999999999887 4333 344588999999999999999999999999
Q ss_pred EEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEE
Q 011711 217 QLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNIL 294 (479)
Q Consensus 217 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~ 294 (479)
+||.+.+|++++.+. ..|...|+++.|+.+ .+++++.|.+++
T Consensus 288 KvWri~tG~ClRrFd------------------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvR 331 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFD------------------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVR 331 (508)
T ss_pred EEEEEecchHHHHhh------------------------------------hhhccCeeEEEEccCcchhhcccccceEE
Confidence 999999999988765 358889999999977 999999999999
Q ss_pred EEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCC--CCCcEEEEEc---CC
Q 011711 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH--TDAPMSLLCW---DQ 367 (479)
Q Consensus 295 iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h--~~~v~~~~~~---~~ 367 (479)
+.-+.+++ .+..+++|.+.|+...|. |..+++++.||+|++|+.++.+++.+++.. ..+|.++... ..
T Consensus 332 iHGlKSGK-----~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 332 IHGLKSGK-----CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred Eeccccch-----hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc
Confidence 99998875 478899999999999995 999999999999999999999999998744 3456666655 57
Q ss_pred EEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceE
Q 011711 368 YLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVR 446 (479)
Q Consensus 368 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~ 446 (479)
.++.+...++|+|-++. ++.+..+...+.+.. --+++..+|.|. ++.+.+.|+.++-|...++.....+. |+..+.
T Consensus 407 h~iVCNrsntv~imn~q-GQvVrsfsSGkREgG-dFi~~~lSpkGe-wiYcigED~vlYCF~~~sG~LE~tl~VhEkdvI 483 (508)
T KOG0275|consen 407 HFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGG-DFINAILSPKGE-WIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVI 483 (508)
T ss_pred eEEEEcCCCeEEEEecc-ceEEeeeccCCccCC-ceEEEEecCCCc-EEEEEccCcEEEEEEeecCceeeeeeccccccc
Confidence 89999999999999885 444444443332222 233444579999 88889999999999999998887776 578899
Q ss_pred EEEECCCc-eEEEEcCCCcEEEEE
Q 011711 447 VIETGPDG-LFFTGDGTGMLSVWK 469 (479)
Q Consensus 447 ~l~~s~~g-~l~sg~~dg~v~vw~ 469 (479)
.++-+|.. .|++=++||.+++|.
T Consensus 484 Gl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 484 GLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccccCcccchhhhhcccchhhhcC
Confidence 99999988 999999999999995
No 66
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2e-26 Score=226.33 Aligned_cols=230 Identities=18% Similarity=0.209 Sum_probs=175.4
Q ss_pred EEecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceE
Q 011711 187 KLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEF 265 (479)
Q Consensus 187 ~~~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~ 265 (479)
.+.+|.+.|++++|+| ++++|++|+.|++|++||+.++...... .....
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~------------------------------~~~l~ 119 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI------------------------------SDPIV 119 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc------------------------------CcceE
Confidence 4789999999999999 8899999999999999999765321100 01123
Q ss_pred EecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEE
Q 011711 266 SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRV 340 (479)
Q Consensus 266 ~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~i 340 (479)
.+.+|...|.+++|+|+ +|++|+.|+.|++||+.++. ....+.+|...|.+++|+ +.+|++++.|++|++
T Consensus 120 ~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-----~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrI 194 (493)
T PTZ00421 120 HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-----AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194 (493)
T ss_pred EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-----EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEE
Confidence 45689999999999974 89999999999999998764 356778899999999996 889999999999999
Q ss_pred EECCCCcEEEEEeCCCCCcE-EEEEc--CCEEEEEe----CCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCC
Q 011711 341 WDLDTLEAVMTLNGHTDAPM-SLLCW--DQYLLSCS----LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGN 413 (479)
Q Consensus 341 wd~~~~~~~~~~~~h~~~v~-~~~~~--~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (479)
||+++++.+.++.+|.+... .+.+. +..+++++ .|+.|++||+++............ ........++++++
T Consensus 195 wD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~--~~~~~~~~~d~d~~ 272 (493)
T PTZ00421 195 IDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ--SSALFIPFFDEDTN 272 (493)
T ss_pred EECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC--CCceEEEEEcCCCC
Confidence 99999999999999987643 34444 45666554 479999999987654333222111 12233445678888
Q ss_pred cEEEEEe-CCCeEEEeecCCCceeeeee--ccCceEEEEECCCc
Q 011711 414 PVLICSC-NDDSVHLYELPSFMERGRIF--SRREVRVIETGPDG 454 (479)
Q Consensus 414 ~~l~s~~-~dg~v~iwd~~~~~~~~~~~--~~~~v~~l~~s~~g 454 (479)
++++++ .|+.|++||+.+++...... ...++..++|.|.-
T Consensus 273 -~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 273 -LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred -EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 555554 69999999999988765543 25568888888853
No 67
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=8.2e-27 Score=221.37 Aligned_cols=368 Identities=15% Similarity=0.220 Sum_probs=262.4
Q ss_pred CCCceeccCCCCCCccccccccCCCCC--CCCCCccccccCc--CCCCCe-eeeeecCCCeEE--EeccCCeeEeCCCCC
Q 011711 99 PKNNVRVSSGSEEGTTHVQNRENPDRT--VPNKSSLDCSTGS--DDSGSK-RTLERTTPKNVC--YHWLSGNCVKGDECR 171 (479)
Q Consensus 99 s~~g~~las~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~c--~~~~~~~~~~g~~d~ 171 (479)
+-+.+++++|..+|.|||++..+.... +|-...+...... .+.... ......-++.+. |......+..-..|.
T Consensus 267 cVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndh 346 (1080)
T KOG1408|consen 267 CVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDH 346 (1080)
T ss_pred eeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCc
Confidence 667889999999999999988775543 2222221111100 000000 111112223333 333455666667789
Q ss_pred eEEEeecCCCce--eeEEEecccccEEEEEeCCC-----------CCEEEEEeCCCcEEEEECCCCceEEEEe-------
Q 011711 172 FWHSWFCGEGFT--MLAKLEGHKKAVSGIALPLR-----------SDKLYSGSRDGTVQLWDCHTGQSASVIN------- 231 (479)
Q Consensus 172 ~i~vw~~~~~~~--~~~~~~~H~~~V~~l~~s~~-----------~~~l~s~s~Dg~v~vwd~~~~~~~~~~~------- 231 (479)
.++|||+.+-.+ ....+--|...|.++.--|- ..-++|++.|++||+||++.+..-..+.
T Consensus 347 SlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~ 426 (1080)
T KOG1408|consen 347 SLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN 426 (1080)
T ss_pred eEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence 999999986533 23445568888888876441 2348999999999999997632111100
Q ss_pred ---------------------------------cCCceeEEEeCCCEEEEE-cCCeEEEEEcCCCceE-EecCCCccEEE
Q 011711 232 ---------------------------------LGAEVGSLICEGPWVFVG-MPNVVKAWHIESSAEF-SLDGPVGEVYS 276 (479)
Q Consensus 232 ---------------------------------~~~~~~~~~~~~~~l~~~-~~~~i~v~~~~~~~~~-~~~~~~~~v~~ 276 (479)
.+-...++.++++.|++| .-|.+++|++..-+.. ..+.|..+|.|
T Consensus 427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilc 506 (1080)
T KOG1408|consen 427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILC 506 (1080)
T ss_pred hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEE
Confidence 000123455688899988 5689999999887764 57899999999
Q ss_pred EEEcCC-----EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc----CCEEEEEeCCCeEEEEECCCCc
Q 011711 277 MVVANE-----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTLE 347 (479)
Q Consensus 277 ~~~~~~-----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~----~~~l~sgs~dg~I~iwd~~~~~ 347 (479)
+.++.. +|++++.|..|.+||+..+ +.+.+++.+|...|+++.|- ...+++++.|..|.+--.+...
T Consensus 507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rn----y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~ 582 (1080)
T KOG1408|consen 507 LEYSFPVLTNKLLASASRDRLIHVYDVKRN----YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS 582 (1080)
T ss_pred EeecCchhhhHhhhhccCCceEEEEecccc----cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc
Confidence 999854 8999999999999999876 56789999999999999994 3679999999988653333211
Q ss_pred EEEEEeCCC-----CCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe
Q 011711 348 AVMTLNGHT-----DAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (479)
Q Consensus 348 ~~~~~~~h~-----~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 420 (479)
-...+..|. ..+..+..+ .+++++++.|..|+|||+.+++....+.+.......+ +....+|.|- ++++++
T Consensus 583 ~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l-IKv~lDPSgi-Y~atSc 660 (1080)
T KOG1408|consen 583 SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL-IKVILDPSGI-YLATSC 660 (1080)
T ss_pred CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce-EEEEECCCcc-EEEEee
Confidence 122222222 235555555 5899999999999999999999888887654442222 2333468888 899999
Q ss_pred CCCeEEEeecCCCceeeeeec-cCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 421 NDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 421 ~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
.|.++.++|+.+++++.+..+ ...|+.+.|.+|- .|++.+.||.|.||.+..
T Consensus 661 sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 661 SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 999999999999999998875 6779999999999 999999999999999865
No 68
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-25 Score=217.39 Aligned_cols=351 Identities=15% Similarity=0.206 Sum_probs=266.2
Q ss_pred CCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeec-CCCeEEEec---cCCeeEeCCCCCeEE
Q 011711 99 PKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERT-TPKNVCYHW---LSGNCVKGDECRFWH 174 (479)
Q Consensus 99 s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~c~~~---~~~~~~~g~~d~~i~ 174 (479)
-+=|.++.++..++.+.||+...+.... ++. ..+.+. ...+..... .-+.++.|+..|.+.
T Consensus 121 ~~fGe~lia~d~~~~l~vw~~s~~~~e~----~l~-----------~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lq 185 (910)
T KOG1539|consen 121 LPFGEHLIAVDISNILFVWKTSSIQEEL----YLQ-----------STFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQ 185 (910)
T ss_pred eeecceEEEEEccCcEEEEEeccccccc----ccc-----------ceeeeccCCceeeEecchhheeeEEEeecCCcEE
Confidence 3557778888888999999766652110 110 011111 111222222 345889999999999
Q ss_pred EeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-CceeEEEe--CCCE-EEEE-
Q 011711 175 SWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG-AEVGSLIC--EGPW-VFVG- 249 (479)
Q Consensus 175 vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~--~~~~-l~~~- 249 (479)
+|++.++ +.+.+++++...|+++.=+|-=+.++.|..+|+|.++|++.++.+..++.. ..+..+++ +|+. ++++
T Consensus 186 l~Nvrt~-K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~ 264 (910)
T KOG1539|consen 186 LWNVRTG-KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR 264 (910)
T ss_pred EEEeccC-cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc
Confidence 9999999 999999999999999999999999999999999999999999999999986 88888887 4664 4455
Q ss_pred cCCeEEEEEcCCCceEE--ecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCc--------------------
Q 011711 250 MPNVVKAWHIESSAEFS--LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNP-------------------- 305 (479)
Q Consensus 250 ~~~~i~v~~~~~~~~~~--~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~-------------------- 305 (479)
..|.+.+||++..+... ...|.+.+....+.+. .+++++.|+.+++|=.+++...+
T Consensus 265 ~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~ 344 (910)
T KOG1539|consen 265 SNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYG 344 (910)
T ss_pred CCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeec
Confidence 44889999999988753 4467788888877766 78888888887776443111000
Q ss_pred --------------------------------------------------ccce--------------------------
Q 011711 306 --------------------------------------------------FQLA-------------------------- 309 (479)
Q Consensus 306 --------------------------------------------------~~~~-------------------------- 309 (479)
.+++
T Consensus 345 ~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~ 424 (910)
T KOG1539|consen 345 SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSA 424 (910)
T ss_pred cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceE
Confidence 0000
Q ss_pred ------------eeec-----CCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEE---eCCCCCcEEEEEc--
Q 011711 310 ------------ALLK-----GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL---NGHTDAPMSLLCW-- 365 (479)
Q Consensus 310 ------------~~~~-----~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~---~~h~~~v~~~~~~-- 365 (479)
..+. .-...+++++.+ |++.+.|+..|.|-+|++++|-...++ ..|..+|..++.+
T Consensus 425 ~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~ 504 (910)
T KOG1539|consen 425 YTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT 504 (910)
T ss_pred EEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC
Confidence 0000 011345666665 999999999999999999999998888 5899999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcce-----------------------------------------EEeccccCccceEEE
Q 011711 366 DQYLLSCSLDNTIKVWIMTEEGNL-----------------------------------------EVAYTHNEDHGVLAL 404 (479)
Q Consensus 366 ~~~l~s~s~dg~i~iwd~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~ 404 (479)
++.+++++.+|.+++||..+...+ +.+.+|...++.+.
T Consensus 505 n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~- 583 (910)
T KOG1539|consen 505 NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT- 583 (910)
T ss_pred CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-
Confidence 678999999999999998765321 11223344444444
Q ss_pred eeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCC-CcEEEEEe
Q 011711 405 GGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGT-GMLSVWKI 470 (479)
Q Consensus 405 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~d-g~v~vw~~ 470 (479)
+||||+ +|++++.|++|++||+.++..+-.+....+..++.|+|+| +|+|...| .-|++|.-
T Consensus 584 ---FS~Dgr-WlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 584 ---FSPDGR-WLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ---eCCCCc-EEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 469999 9999999999999999999999999999999999999999 99999888 67999964
No 69
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.2e-25 Score=221.86 Aligned_cols=250 Identities=16% Similarity=0.177 Sum_probs=187.4
Q ss_pred eCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCC-CCEEEEEeCCCcEEEEECCCCce-EEEEecCCceeEEEeCC
Q 011711 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQS-ASVINLGAEVGSLICEG 243 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~-~~~l~s~s~Dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~ 243 (479)
.|+.++.|++|+.... ..+..+.+|.+.|.+++|+|+ +++|+||+.|++|+|||+.++.. ...+.
T Consensus 49 gGG~~gvI~L~~~~r~-~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~------------ 115 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK-PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK------------ 115 (568)
T ss_pred CCCceeEEEeeecCCC-ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc------------
Confidence 4778999999999876 678899999999999999997 78999999999999999986532 11000
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeE
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~ 320 (479)
.....+.+|...|.+++|+|+ .+++++.|+.|++||+.++.. ...+. |...|.
T Consensus 116 ------------------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-----~~~i~-~~~~V~ 171 (568)
T PTZ00420 116 ------------------DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-----AFQIN-MPKKLS 171 (568)
T ss_pred ------------------cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE-----EEEEe-cCCcEE
Confidence 011234578899999999986 567899999999999987642 33333 567899
Q ss_pred EEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEE-------cCCEEEEEeCCC----eEEEEEcCCCc
Q 011711 321 CLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC-------WDQYLLSCSLDN----TIKVWIMTEEG 387 (479)
Q Consensus 321 ~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~-------~~~~l~s~s~dg----~i~iwd~~~~~ 387 (479)
+++|+ |.+|++++.|+.|++||+++++.+.++.+|.+.+....+ ++++|++++.|+ +|+|||+++..
T Consensus 172 SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~ 251 (568)
T PTZ00420 172 SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT 251 (568)
T ss_pred EEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC
Confidence 99996 899999999999999999999999999999887544332 357889888774 79999998643
Q ss_pred ceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCce--eeeeeccCceEEEEECCCc
Q 011711 388 NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFME--RGRIFSRREVRVIETGPDG 454 (479)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~l~~s~~g 454 (479)
.......+...... +...++++...++++|+.|+.|++|++..+.. +....+..++..++|.|..
T Consensus 252 ~pl~~~~ld~~~~~--L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 252 SALVTMSIDNASAP--LIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CceEEEEecCCccc--eEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 32223233222222 22233354344888999999999999976532 2222346778899999964
No 70
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.9e-26 Score=197.73 Aligned_cols=287 Identities=16% Similarity=0.210 Sum_probs=227.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccC
Q 011711 82 QTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (479)
Q Consensus 82 p~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 161 (479)
|.+.|..-...|+++.|+++|.+|+++++|.+++|+|...+.+. ..-...++..+..||....
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~-----------------~ti~skkyG~~~~~Fth~~ 68 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV-----------------KTINSKKYGVDLACFTHHS 68 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee-----------------eEeecccccccEEEEecCC
Confidence 45556566788999999999999999999999999987766541 1111235566799999999
Q ss_pred CeeEeCCC--CCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEE
Q 011711 162 GNCVKGDE--CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239 (479)
Q Consensus 162 ~~~~~g~~--d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~ 239 (479)
..++.++. |.+||.-++.+. +.++.|.||...|++|+.+|-++.+++++.|++|++||++..++...+.....
T Consensus 69 ~~~i~sStk~d~tIryLsl~dN-kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~---- 143 (311)
T KOG1446|consen 69 NTVIHSSTKEDDTIRYLSLHDN-KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR---- 143 (311)
T ss_pred ceEEEccCCCCCceEEEEeecC-ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----
Confidence 98888876 899999999998 99999999999999999999999999999999999999998887766653222
Q ss_pred EeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC
Q 011711 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (479)
Q Consensus 240 ~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~ 317 (479)
...+++|+ .+|++.....|++||++.-...+++......+-..
T Consensus 144 -----------------------------------pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ 188 (311)
T KOG1446|consen 144 -----------------------------------PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA 188 (311)
T ss_pred -----------------------------------cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc
Confidence 24566666 67777777799999999876665655544446677
Q ss_pred CeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCc---EEEE--EcCCEEEEEeCCCeEEEEEcCCCcceE
Q 011711 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAP---MSLL--CWDQYLLSCSLDNTIKVWIMTEEGNLE 390 (479)
Q Consensus 318 ~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v---~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (479)
..+.|.|+ |++++.++..+.+++.|.-+|..+.++..+...- .... ++++++++|+.||+|.+|+++++..+.
T Consensus 189 ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 88999996 9999999999999999999999999998776543 2333 448999999999999999999998888
Q ss_pred Eeccc-cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 391 VAYTH-NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 391 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
.+.+. ..+..++.+ +|.-. +++++ +..+.+|=...
T Consensus 269 ~~~~~~~~~~~~~~f----nP~~~-mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 269 VLRGPNGGPVSCVRF----NPRYA-MFVSA--SSNLVFWLPDE 304 (311)
T ss_pred EecCCCCCCcccccc----CCcee-eeeec--CceEEEEeccc
Confidence 88774 555555553 57644 55554 67788886543
No 71
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.1e-27 Score=203.71 Aligned_cols=299 Identities=20% Similarity=0.275 Sum_probs=229.2
Q ss_pred eccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECC------CCceEEEEe
Q 011711 158 HWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH------TGQSASVIN 231 (479)
Q Consensus 158 ~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~------~~~~~~~~~ 231 (479)
......|.+++.|.+.+||.++++ .++.++.||.+.|++|+|++.+.+++|++.|++..||... .........
T Consensus 157 ~~tqpi~gtASADhTA~iWs~Esg-~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hS 235 (481)
T KOG0300|consen 157 DSTQPICGTASADHTARIWSLESG-ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHS 235 (481)
T ss_pred hcCCcceeecccccceeEEeeccc-cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCC
Confidence 334557889999999999999999 8999999999999999999999999999999999999732 111111111
Q ss_pred cCCceeEEEeCCCEEEEE--cC-CeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcc
Q 011711 232 LGAEVGSLICEGPWVFVG--MP-NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPF 306 (479)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~--~~-~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~ 306 (479)
...+..+-.-+++..-.+ .| .+|++ ....+.+|.+.|.+..|... .+++++.|.+-.+||+.++.
T Consensus 236 sEeE~e~sDe~~~d~d~~~~sD~~tiRv------Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge---- 305 (481)
T KOG0300|consen 236 SEEEEEHSDEHNRDTDSSEKSDGHTIRV------PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE---- 305 (481)
T ss_pred chhhhhcccccccccccccccCCceeee------eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc----
Confidence 111111111111111100 11 12222 12457789999999988644 99999999999999999975
Q ss_pred cceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCC-CcEEEEEeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEE
Q 011711 307 QLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT-LEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWI 382 (479)
Q Consensus 307 ~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd 382 (479)
++..+.+|....+.++-+ ..++++.+.|-+.++||.+. -+.+..|++|.+.|++..|. +..+++|+.|.+|++||
T Consensus 306 -~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 306 -VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWD 384 (481)
T ss_pred -eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEee
Confidence 588899999999988876 77889999999999999984 34577899999999999998 89999999999999999
Q ss_pred cCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee------ccCceEEEEECCCc--
Q 011711 383 MTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF------SRREVRVIETGPDG-- 454 (479)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------~~~~v~~l~~s~~g-- 454 (479)
+++............+++.+.++ .|.++|+.--.+..|++||++.... ..+. |...|.|.+|..+.
T Consensus 385 LrNMRsplATIRtdS~~NRvavs-----~g~~iIAiPhDNRqvRlfDlnG~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~ 458 (481)
T KOG0300|consen 385 LRNMRSPLATIRTDSPANRVAVS-----KGHPIIAIPHDNRQVRLFDLNGNRL-ARLPRTSRQGHRRMVTCCAWLEEHPA 458 (481)
T ss_pred eccccCcceeeecCCccceeEee-----cCCceEEeccCCceEEEEecCCCcc-ccCCcccccccceeeeeeeccccCcc
Confidence 99887655555566666777773 4555888888889999999976443 2332 46779999999876
Q ss_pred -eEEEEcCCCcEEEEEeccCC
Q 011711 455 -LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 455 -~l~sg~~dg~v~vw~~~~~~ 474 (479)
-|++++.|..+.-|++....
T Consensus 459 cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 459 CNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cccccccccceeeeeEecccC
Confidence 79999999999999997643
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=3e-28 Score=204.13 Aligned_cols=241 Identities=22% Similarity=0.277 Sum_probs=213.2
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCee
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 164 (479)
+|+||++.|++...++|-.+-||++.|=+.+|||.-+... ....-++|....+.|......+
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde------------------lhsf~hkhivk~~af~~ds~~l 115 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE------------------LHSFEHKHIVKAVAFSQDSNYL 115 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh------------------hhhhhhhheeeeEEecccchhh
Confidence 7899999999999999999999999999999997554432 1122346777788898899999
Q ss_pred EeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE--eC
Q 011711 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CE 242 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~ 242 (479)
++|+.++.+||||++....+...+.+|.+.|..+-|....+.+++++.|++||+||..++..++.+..+.++.++. .+
T Consensus 116 ltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~d 195 (334)
T KOG0278|consen 116 LTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQD 195 (334)
T ss_pred hccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccC
Confidence 9999999999999998878899999999999999998888899999999999999999999999999998887755 69
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceee-ecCCCCCe
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAAL-LKGHTRPV 319 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~h~~~i 319 (479)
|+++.....+.|.+||..+-..+....-...|.+...+|+ .+++|++|+.++.||..++.. +.. .++|.++|
T Consensus 196 G~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE-----i~~~nkgh~gpV 270 (334)
T KOG0278|consen 196 GRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE-----IGSYNKGHFGPV 270 (334)
T ss_pred CCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCce-----eeecccCCCCce
Confidence 9999999999999999999988877777778888888888 899999999999999999864 333 48999999
Q ss_pred EEEEEc--CCEEEEEeCCCeEEEEECCCCcE
Q 011711 320 TCLAVG--GKRLYSGSMDNTIRVWDLDTLEA 348 (479)
Q Consensus 320 ~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~ 348 (479)
.|+.|+ |...++||+||+|++|.+..++.
T Consensus 271 hcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 271 HCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 999997 88899999999999999876554
No 73
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.1e-26 Score=208.75 Aligned_cols=300 Identities=20% Similarity=0.241 Sum_probs=223.8
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCee
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 164 (479)
....|..++.+++.+|++++..+++.||+|.=|+..+.... .. .+-++ .++..+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~----~~---i~~~~-----ev~k~~-------------- 190 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKD----RY---IIERD-----EVLKSH-------------- 190 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCccc----cc---ccccc-----hhhhhc--------------
Confidence 34779999999999999999999999999999965554320 00 00000 000000
Q ss_pred EeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCC
Q 011711 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (479)
+ ...++-. ++|...|.+++.++||++||+|+.|..|.||+.++.+.+..+
T Consensus 191 -----------~---~~~k~~r--~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-------------- 240 (479)
T KOG0299|consen 191 -----------G---NPLKESR--KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-------------- 240 (479)
T ss_pred -----------c---CCCCccc--ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcc--------------
Confidence 0 0001111 489999999999999999999999999999999998877654
Q ss_pred EEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEE
Q 011711 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l 322 (479)
.+|.+.|.+++|-.. .+++++.|+.|++|++... ..+.++.+|++.|..|
T Consensus 241 -----------------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-----s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 241 -----------------------KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-----SYVETLYGHQDGVLGI 292 (479)
T ss_pred -----------------------cccccceeeeeeecCccceeeeecCCceEEEehhHh-----HHHHHHhCCccceeee
Confidence 478999999999755 9999999999999998874 4578899999999999
Q ss_pred EEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEeccccCcc
Q 011711 323 AVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDH 399 (479)
Q Consensus 323 ~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 399 (479)
... +..+-+|+.|+++++|++. .+....+.+|.+.+-++++- ...+++|+.+|.|.+|++...+++........-.
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred chhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 885 5556667799999999994 45556778888889888887 7899999999999999998887765544321111
Q ss_pred ce--------EEEeeeeCCCCCcEEEEEeCCCeEEEeecCCC----ceeeeeeccCceEEEEECCCc-eEEE-EcCCCcE
Q 011711 400 GV--------LALGGLNDPDGNPVLICSCNDDSVHLYELPSF----MERGRIFSRREVRVIETGPDG-LFFT-GDGTGML 465 (479)
Q Consensus 400 ~~--------~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~v~~l~~s~~g-~l~s-g~~dg~v 465 (479)
.. ...++...|..+ ++++|+.+|.|++|-+..+ .++..+.-.+-|++++|+++| .+++ .+..-.+
T Consensus 372 ~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred CCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccccccc
Confidence 11 222222235555 9999999999999998876 445555568899999999999 4544 4555555
Q ss_pred EEEEe
Q 011711 466 SVWKI 470 (479)
Q Consensus 466 ~vw~~ 470 (479)
--|-.
T Consensus 451 GRW~~ 455 (479)
T KOG0299|consen 451 GRWWC 455 (479)
T ss_pred ceeeE
Confidence 55543
No 74
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.6e-27 Score=213.16 Aligned_cols=271 Identities=16% Similarity=0.219 Sum_probs=220.0
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecCCC-ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
.+-+....+.+++|+.|+.|++|++... .+.+.++.|-.++|+++.|.+++.++++++.|+.+++|++...+...++
T Consensus 180 ~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-- 257 (459)
T KOG0288|consen 180 DVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-- 257 (459)
T ss_pred eeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh--
Confidence 4445555679999999999999999654 3477889999999999999999999999999999999999988766554
Q ss_pred CCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCccccee
Q 011711 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (479)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 310 (479)
.+|.+.|+++.+... .+++|+.|.+|+.||+..... ..
T Consensus 258 -----------------------------------sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C-----~k 297 (459)
T KOG0288|consen 258 -----------------------------------SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC-----SK 297 (459)
T ss_pred -----------------------------------cccccceeeehhhccccceeeccccchhhhhhhhhhhe-----ec
Confidence 479999999998765 589999999999999987532 22
Q ss_pred eecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcc
Q 011711 311 LLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN 388 (479)
Q Consensus 311 ~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~ 388 (479)
+.. ....+..|..+...+++|-.|++|++||.++..+..+...+. .|.++... +..|++++.|.++.+.|+++.+.
T Consensus 298 t~l-~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI 375 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI 375 (459)
T ss_pred ccc-ccccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence 211 233455566667789999999999999999999999998776 78877766 78899999999999999998876
Q ss_pred eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec---cCceEEEEECCCc-eEEEEcCCCc
Q 011711 389 LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS---RREVRVIETGPDG-LFFTGDGTGM 464 (479)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~l~~s~~g-~l~sg~~dg~ 464 (479)
...+.........-.....++|++. ++++|+.||.|+||++.+++....+.. ...|++++|+|.| .+++++.++.
T Consensus 376 ~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~ 454 (459)
T KOG0288|consen 376 RQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKA 454 (459)
T ss_pred EEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcc
Confidence 6655543322222222334579998 899999999999999999988877764 3369999999999 9999999999
Q ss_pred EEEEE
Q 011711 465 LSVWK 469 (479)
Q Consensus 465 v~vw~ 469 (479)
+.+|.
T Consensus 455 v~lW~ 459 (459)
T KOG0288|consen 455 VTLWT 459 (459)
T ss_pred eEecC
Confidence 99993
No 75
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=3.3e-27 Score=204.87 Aligned_cols=248 Identities=23% Similarity=0.320 Sum_probs=205.2
Q ss_pred cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecC
Q 011711 190 GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDG 269 (479)
Q Consensus 190 ~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~ 269 (479)
+.++-+.|..|+|||++|++||.||.|.+||..+|+....++.... -.+--
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq-----------------------------d~fMM 261 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ-----------------------------DNFMM 261 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh-----------------------------cceee
Confidence 4567788999999999999999999999999999987765543222 12234
Q ss_pred CCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeec-CCCCCeEEEEEc--CCEEEEEeCCCeEEEEECC
Q 011711 270 PVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLK-GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD 344 (479)
Q Consensus 270 ~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~ 344 (479)
+...|.|+.|+.+ ++++|+.||.|++|.+.++.. +..+. +|...|+|+.|+ +..+++++.|.++++.-++
T Consensus 262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C-----lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK 336 (508)
T KOG0275|consen 262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC-----LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK 336 (508)
T ss_pred cccceEEEeecccHHHhhccCcCCcEEEEEEecchH-----HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc
Confidence 6788999999988 999999999999999999864 44454 899999999997 7889999999999999999
Q ss_pred CCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCC
Q 011711 345 TLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND 422 (479)
Q Consensus 345 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 422 (479)
+|++++.+.+|++.|....+. |..+++++.||+|++|+..+.+++..+...........+... |.+...++.+...
T Consensus 337 SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~--PKnpeh~iVCNrs 414 (508)
T KOG0275|consen 337 SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILL--PKNPEHFIVCNRS 414 (508)
T ss_pred cchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEc--CCCCceEEEEcCC
Confidence 999999999999999998887 889999999999999999999998887776655444433332 5444466667788
Q ss_pred CeEEEeecCCCceeeeeec----cCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 423 DSVHLYELPSFMERGRIFS----RREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 423 g~v~iwd~~~~~~~~~~~~----~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
++|.|.++. ++.+..+.. .+...+...+|.| ++.+.++|+.++-|.+.++.
T Consensus 415 ntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 415 NTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred CeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence 999999885 455555543 5668888999999 99999999999999988765
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=225.24 Aligned_cols=280 Identities=14% Similarity=0.212 Sum_probs=197.4
Q ss_pred eeEEEe-cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-----------CceeEEEeC-----CCEE
Q 011711 184 MLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG-----------AEVGSLICE-----GPWV 246 (479)
Q Consensus 184 ~~~~~~-~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~-----------~~~~~~~~~-----~~~l 246 (479)
..+.+. +|+++|.++.|++||+|||+|+.|+.|+||.+...+....-... ..+..+... ++..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345566 89999999999999999999999999999998763331110000 000000000 0111
Q ss_pred EE--E-cCCeE----EEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 247 FV--G-MPNVV----KAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 247 ~~--~-~~~~i----~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
.. + ....+ +++-+.......+.+|.+.|..+.|+.+ +|++++.|.+|++|++.... ++.. ..|.+.
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~-----CL~~-F~Hndf 411 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKE-----CLKV-FSHNDF 411 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcc-----eeeE-EecCCe
Confidence 00 0 00111 1122222333467899999999999988 99999999999999998754 3444 459999
Q ss_pred eEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEec
Q 011711 319 VTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (479)
Q Consensus 319 i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (479)
|+|++|+ .++|++|+-||.|+||++...+.+.-...+ .-|+++.+. |+..+.|+.+|.+++|+....+......
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 9999996 899999999999999999987766544444 667777776 8999999999999999988765433322
Q ss_pred ccc--------CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec---cCceEEEEECCCc-eEEEEcC
Q 011711 394 THN--------EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS---RREVRVIETGPDG-LFFTGDG 461 (479)
Q Consensus 394 ~~~--------~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~l~~s~~g-~l~sg~~ 461 (479)
.+. ..++.+.+ .|....-+++.++|..|+|||.++...+..+.+ ...-....|+.|| +|+++++
T Consensus 491 I~~~~~Kk~~~~rITG~Q~----~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQF----FPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE 566 (712)
T ss_pred EeeccCccccCceeeeeEe----cCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec
Confidence 211 12222322 233222344566899999999988888888775 4456778899999 9999999
Q ss_pred CCcEEEEEeccCC
Q 011711 462 TGMLSVWKILAKP 474 (479)
Q Consensus 462 dg~v~vw~~~~~~ 474 (479)
|..|++|++....
T Consensus 567 Ds~VYiW~~~~~~ 579 (712)
T KOG0283|consen 567 DSWVYIWKNDSFN 579 (712)
T ss_pred CceEEEEeCCCCc
Confidence 9999999985543
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-24 Score=188.89 Aligned_cols=283 Identities=13% Similarity=0.197 Sum_probs=222.7
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC---CceeEEEeC-CCEEEEE--cCCeEEE
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG---AEVGSLICE-GPWVFVG--MPNVVKA 256 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~---~~~~~~~~~-~~~l~~~--~~~~i~v 256 (479)
++.+.+..-.+.|+++.|+++|.+|++++.|.++++||..++++++++... ....++... ...+.++ .|.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 455667777889999999999999999999999999999999999988765 344445444 4444444 4789999
Q ss_pred EEcCCCceEE-ecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEe
Q 011711 257 WHIESSAEFS-LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGS 333 (479)
Q Consensus 257 ~~~~~~~~~~-~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs 333 (479)
.++.+++.+. +.+|...|++++.+|. .+++++.|++|++||++..+. ...+.....+|.+....|-++|++.
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-----qg~l~~~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-----QGLLNLSGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-----ceEEecCCCcceeECCCCcEEEEec
Confidence 9999998775 7899999999999876 999999999999999996543 3444444556655555588888888
Q ss_pred CCCeEEEEECCCC--cEEEEEeC---CCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEee
Q 011711 334 MDNTIRVWDLDTL--EAVMTLNG---HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGG 406 (479)
Q Consensus 334 ~dg~I~iwd~~~~--~~~~~~~~---h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 406 (479)
....|++||+++. .+..++.. .......+.|+ |++|+.+...+.+++.|.-++..+..+..+.... .+...+
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~-~~~~~a 238 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG-NLPLSA 238 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC-CcceeE
Confidence 8889999999974 34444433 34556677776 8999999999999999999988766666655443 233666
Q ss_pred eeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec--cCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 407 LNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS--RREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 407 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
.++||++ ++++|+.||+|++|+++++.....+.. ..++.++.|+|.. .+++++ ..+.+|=....+
T Consensus 239 ~ftPds~-Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 239 TFTPDSK-FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDEDA 306 (311)
T ss_pred EECCCCc-EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEeccccc
Confidence 7789999 888999999999999999999988876 6889999999997 666665 457777655433
No 78
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-26 Score=193.82 Aligned_cols=254 Identities=16% Similarity=0.203 Sum_probs=203.2
Q ss_pred CCeEEEeecCCC--ceeeEEEecccccEEEEEeCCC-CCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEE
Q 011711 170 CRFWHSWFCGEG--FTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWV 246 (479)
Q Consensus 170 d~~i~vw~~~~~--~~~~~~~~~H~~~V~~l~~s~~-~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (479)
.|.+.|-++..+ ......+. -++.+.+++|+++ .+.+++++.||++++||+....
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------------------- 94 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--------------------- 94 (311)
T ss_pred CceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCC---------------------
Confidence 478888888533 33333343 4688999999886 5678999999999999953221
Q ss_pred EEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEE
Q 011711 247 FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLA 323 (479)
Q Consensus 247 ~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~ 323 (479)
+....++.|..+|.++.|++. .+++++.|++|++|+...... +.++.+|..-|....
T Consensus 95 ---------------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-----v~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 95 ---------------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-----VQTFNGHNSCIYQAA 154 (311)
T ss_pred ---------------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc-----eEeecCCccEEEEEe
Confidence 111245679999999999865 888889999999999877653 788999999999999
Q ss_pred Ec---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCc-ceEEecccc
Q 011711 324 VG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEG-NLEVAYTHN 396 (479)
Q Consensus 324 ~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~ 396 (479)
|+ ++.++++|.|+++++||++..-....+..|...+.++.|+ ...+++|+.|+.|++||+++-+ ++..+.+|.
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~ 234 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG 234 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc
Confidence 97 8999999999999999999755555599999999999987 6789999999999999998754 455666676
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc-eeeeee-ccCceEEEEECCCc--eEEEEcCCCcEEEEE
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM-ERGRIF-SRREVRVIETGPDG--LFFTGDGTGMLSVWK 469 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~-~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~ 469 (479)
-.+..+.+ +|....+|++++.|-+++|||..... .+.+.. |.+-+..+.|++-. ++++++-|+.++||+
T Consensus 235 ~AVRkvk~----Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 235 LAVRKVKF----SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred eEEEEEec----CcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 66666665 57777799999999999999998543 333444 35668889999854 999999999999998
No 79
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.9e-27 Score=196.90 Aligned_cols=225 Identities=19% Similarity=0.284 Sum_probs=186.6
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~ 239 (479)
.+.+++++.||.+++||......+++.++.|+..|.++.|++ +.+.++++|.|++|++|+...++.+.++
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf--------- 143 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF--------- 143 (311)
T ss_pred cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee---------
Confidence 447788999999999999877789999999999999999987 4567888899999999999887776654
Q ss_pred EeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCC
Q 011711 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (479)
Q Consensus 240 ~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~ 316 (479)
.+|...|+...|+|. .+++++.||.+++||++.... ...+..|.
T Consensus 144 ----------------------------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-----~~~i~ah~ 190 (311)
T KOG0277|consen 144 ----------------------------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-----FMSIEAHN 190 (311)
T ss_pred ----------------------------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-----eeEEEecc
Confidence 468888999999865 999999999999999987643 33488999
Q ss_pred CCeEEEEEc---CCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcce
Q 011711 317 RPVTCLAVG---GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNL 389 (479)
Q Consensus 317 ~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~ 389 (479)
.+|.|+.|+ .+.++||+.|+.|++||+++. .++..+.+|.-.|..+.++ ...|++++.|-+++|||...+...
T Consensus 191 ~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~ 270 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA 270 (311)
T ss_pred ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence 999999996 788999999999999999984 4688899999999999998 468999999999999999865443
Q ss_pred EEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeec
Q 011711 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 430 (479)
.....+. ....+.+.|++-....+++.+.|+.++||+.
T Consensus 271 ~e~~~~H---tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 271 IETVDHH---TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhhcc---ceEEeccccccccCceeeecccccceeeecc
Confidence 3333322 2234444455544458999999999999984
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.9e-27 Score=221.70 Aligned_cols=270 Identities=23% Similarity=0.319 Sum_probs=220.9
Q ss_pred CCeeEeCCCCCeEEEeecCCCce-----eeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc--eEEEEecC
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFT-----MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ--SASVINLG 233 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~-----~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~--~~~~~~~~ 233 (479)
...+.+|+.||.|++|+...... .+..++.|.+.|.+++...+++.|+++|.|-+|++|+...+. +..
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s----- 111 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS----- 111 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh-----
Confidence 34699999999999999975422 478899999999999999999999999999999999988763 222
Q ss_pred CceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEE-cCC--EEEEEeCCCcEEEEEccCCCC-----Cc
Q 011711 234 AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVV-ANE--MLFAGAQDGNILVWKGIPNTQ-----NP 305 (479)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~-~~~--~l~~g~~dg~i~iwd~~~~~~-----~~ 305 (479)
.+..|...|.|+++ .++ ++|+|+-|+.|.+||++++.. ..
T Consensus 112 --------------------------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 112 --------------------------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred --------------------------------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc
Confidence 34468999999999 444 999999999999999997632 00
Q ss_pred ccceeeec-CCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEE
Q 011711 306 FQLAALLK-GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKV 380 (479)
Q Consensus 306 ~~~~~~~~-~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~i 380 (479)
......+. ++..+|++++.+ +..+++|+.++.|++||.++.+.+..+.+|...|..+..+ |..+++++.||+|++
T Consensus 160 ~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 160 NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEe
Confidence 11222333 889999999998 6689999999999999999999999999999999998887 889999999999999
Q ss_pred EEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee-eccCceEEEEECCCc-eEEE
Q 011711 381 WIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI-FSRREVRVIETGPDG-LFFT 458 (479)
Q Consensus 381 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~l~~s~~g-~l~s 458 (479)
||+....++..+..|.+.+..+.. +|+=. .+++|+.||.|..=|+.+......+ ....+|..+..+... -+-+
T Consensus 240 WdLgqQrCl~T~~vH~e~VWaL~~----~~sf~-~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 240 WDLGQQRCLATYIVHKEGVWALQS----SPSFT-HVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWV 314 (735)
T ss_pred eeccccceeeeEEeccCceEEEee----CCCcc-eEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCcee
Confidence 999999999998888887555444 35555 8999999999999999986443333 346778888887544 5577
Q ss_pred EcCCCcEEEEEecc
Q 011711 459 GDGTGMLSVWKILA 472 (479)
Q Consensus 459 g~~dg~v~vw~~~~ 472 (479)
+..|+.|+-|....
T Consensus 315 tTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 315 TTTDSSIKRWKLEP 328 (735)
T ss_pred eeccccceecCCcc
Confidence 77889999997654
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=5.5e-27 Score=209.70 Aligned_cols=284 Identities=18% Similarity=0.257 Sum_probs=229.7
Q ss_pred ccccCCCC---CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCC
Q 011711 77 AHTESQTL---PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK 153 (479)
Q Consensus 77 l~~~~p~~---~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (479)
+-..+|.. .+..|...+..+.|-++...|++|+.|..|++|+...... .....+.-+.| ...
T Consensus 159 v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~--~~~~tLaGs~g-------------~it 223 (459)
T KOG0288|consen 159 VEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS--ELISTLAGSLG-------------NIT 223 (459)
T ss_pred hhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh--hhhhhhhccCC-------------Ccc
Confidence 44455555 3378999999999999999999999999999998666542 11111111111 113
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 233 (479)
.+-+......+++.+.|+.+++|+++.. +..++|.||++.|+++.|......+++|+.|.+|++||+....+..++-..
T Consensus 224 ~~d~d~~~~~~iAas~d~~~r~Wnvd~~-r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~ 302 (459)
T KOG0288|consen 224 SIDFDSDNKHVIAASNDKNLRLWNVDSL-RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG 302 (459)
T ss_pred eeeecCCCceEEeecCCCceeeeeccch-hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc
Confidence 4556666778999999999999999988 889999999999999999887777999999999999999999999998888
Q ss_pred CceeEEEeCCCEEEEE-cCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCccccee
Q 011711 234 AEVGSLICEGPWVFVG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (479)
Q Consensus 234 ~~~~~~~~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 310 (479)
.....+.+....+++| .|+.|++||+++........-.+.|+++..+.+ .+++.+.|..+.+.|+++... ..
T Consensus 303 S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-----~~ 377 (459)
T KOG0288|consen 303 SQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-----RQ 377 (459)
T ss_pred ccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccE-----EE
Confidence 8888887766666666 789999999999988776666679999999877 888889999999999988653 33
Q ss_pred eecCC----CCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCC--cEEEEEc--CCEEEEEeCCCeEEE
Q 011711 311 LLKGH----TRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA--PMSLLCW--DQYLLSCSLDNTIKV 380 (479)
Q Consensus 311 ~~~~h----~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~--v~~~~~~--~~~l~s~s~dg~i~i 380 (479)
.+.+. ....+.+.|+ +.|+++|+.||.|+||++.++++...+...... |+++.|+ |..+++++.++.+.+
T Consensus 378 ~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 378 TFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred EeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence 33221 1235667776 899999999999999999999999988765554 9999998 899999999999999
Q ss_pred E
Q 011711 381 W 381 (479)
Q Consensus 381 w 381 (479)
|
T Consensus 458 W 458 (459)
T KOG0288|consen 458 W 458 (459)
T ss_pred c
Confidence 9
No 82
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=2.2e-27 Score=216.33 Aligned_cols=243 Identities=20% Similarity=0.335 Sum_probs=199.3
Q ss_pred eeeEEEecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCC-CceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcC
Q 011711 183 TMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHT-GQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIE 260 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~ 260 (479)
+.++.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf------------------------------ 254 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF------------------------------ 254 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh------------------------------
Confidence 67889999999999999999 899999999999999999865 5666554
Q ss_pred CCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCC
Q 011711 261 SSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMD 335 (479)
Q Consensus 261 ~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~d 335 (479)
.+|...|.+++|+++ .+++++.|+.|++||++++.. ...+. ....++|+.|+ .+.+++|+.|
T Consensus 255 -------~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~-----~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd 321 (503)
T KOG0282|consen 255 -------KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV-----LSRFH-LDKVPTCVKFHPDNQNIFLVGGSD 321 (503)
T ss_pred -------hcchhhhhhhhccccCCeeeeeecceeeeeeccccceE-----EEEEe-cCCCceeeecCCCCCcEEEEecCC
Confidence 479999999999987 999999999999999999863 33332 34567889886 4899999999
Q ss_pred CeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccc-cCccceEEEeeeeCCCC
Q 011711 336 NTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALGGLNDPDG 412 (479)
Q Consensus 336 g~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 412 (479)
+.|+.||+++++.++++..|-+.|..+.|. +..+++.+.|++++||+.+.+-.+...... .....++.. +|++
T Consensus 322 ~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~----~P~~ 397 (503)
T KOG0282|consen 322 KKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTL----HPNG 397 (503)
T ss_pred CcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceec----CCCC
Confidence 999999999999999999999999999997 789999999999999999877655433322 222333333 5888
Q ss_pred CcEEEEEeCCCeEEEeecCCCceee---eee---ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 413 NPVLICSCNDDSVHLYELPSFMERG---RIF---SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 413 ~~~l~s~~~dg~v~iwd~~~~~~~~---~~~---~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
+ ++++-+.|+.|.+|.+...-... .+. ..+--..+.||||| +|++|+.||.+.+||+.+-
T Consensus 398 ~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 398 K-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred C-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence 8 88889999999999875432221 111 15667889999999 9999999999999999763
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7e-26 Score=206.90 Aligned_cols=271 Identities=22% Similarity=0.336 Sum_probs=219.8
Q ss_pred CeEEEeccCC--eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 011711 153 KNVCYHWLSG--NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (479)
Q Consensus 153 ~~~c~~~~~~--~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~ 230 (479)
..+|+.+... ..++++ -.+.+|+..+. ...+++.--+..|.++.|-.||++|+.|+..|.|+|+|..+...++
T Consensus 30 ssl~fsp~~P~d~aVt~S--~rvqly~~~~~-~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR-- 104 (487)
T KOG0310|consen 30 SSLCFSPKHPYDFAVTSS--VRVQLYSSVTR-SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR-- 104 (487)
T ss_pred eeEecCCCCCCceEEecc--cEEEEEecchh-hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH--
Confidence 5778777554 344443 67889998776 5666666678999999999999999999999999999966533332
Q ss_pred ecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCccc
Q 011711 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQ 307 (479)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~ 307 (479)
.+.+|..++....|++. .+++|+.|+.+++||+.+..
T Consensus 105 -----------------------------------~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----- 144 (487)
T KOG0310|consen 105 -----------------------------------QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----- 144 (487)
T ss_pred -----------------------------------HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-----
Confidence 34578889999998876 89999999999999998864
Q ss_pred ceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEE
Q 011711 308 LAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVW 381 (479)
Q Consensus 308 ~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iw 381 (479)
....+.+|++.|.|.++. +..++||+.||+|++||+++. ..+.++. |..+|..+.+- |..+++++ ...|++|
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVW 222 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVW 222 (487)
T ss_pred EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEE
Confidence 256789999999999996 568999999999999999987 6666666 88888888877 46777666 5689999
Q ss_pred EcCCCcceEEe-ccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEE
Q 011711 382 IMTEEGNLEVA-YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTG 459 (479)
Q Consensus 382 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg 459 (479)
|+.++...... ..|...++++.+. .++. -|++++-|+.|++||+.+.+.+..+.-.++|.+++.+|++ .++.|
T Consensus 223 Dl~~G~qll~~~~~H~KtVTcL~l~----s~~~-rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 223 DLTTGGQLLTSMFNHNKTVTCLRLA----SDST-RLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EecCCceehhhhhcccceEEEEEee----cCCc-eEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEe
Confidence 99866554444 4488888888775 5665 7889999999999999999999999889999999999999 99999
Q ss_pred cCCCcEEEEEeccCCC
Q 011711 460 DGTGMLSVWKILAKPN 475 (479)
Q Consensus 460 ~~dg~v~vw~~~~~~~ 475 (479)
-.||.+.+=+...+++
T Consensus 298 msnGlv~~rr~~~k~k 313 (487)
T KOG0310|consen 298 MSNGLVSIRRREVKKK 313 (487)
T ss_pred cccceeeeehhhcccC
Confidence 9999998875544443
No 84
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8e-24 Score=175.10 Aligned_cols=278 Identities=18% Similarity=0.232 Sum_probs=221.0
Q ss_pred CCeEEEeccCCeeEeCCCCCeEEEeecCCC--------------ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEE
Q 011711 152 PKNVCYHWLSGNCVKGDECRFWHSWFCGEG--------------FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQ 217 (479)
Q Consensus 152 ~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~--------------~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~ 217 (479)
...+.|++.++..+.|+..++.+|-....- .-..+.-+.|++.|.|.+|+|+|++|+||+.|++|+
T Consensus 35 irav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik 114 (350)
T KOG0641|consen 35 IRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK 114 (350)
T ss_pred eeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEE
Confidence 357889999999999999999998765311 112233456899999999999999999999999999
Q ss_pred EEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC------EEEEE-eCC
Q 011711 218 LWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE------MLFAG-AQD 290 (479)
Q Consensus 218 vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~------~l~~g-~~d 290 (479)
+.-.+...+.. ++..+.+.-|.+.|..++|..+ +|+++ ..|
T Consensus 115 ~l~fn~dt~~~--------------------------------~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 115 VLPFNADTCNA--------------------------------TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred EEecccccccc--------------------------------cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 98765443221 2334566678999999999654 55554 457
Q ss_pred CcEEEEEccCCCCCcccceeeecCCCCCeEEE-EEcCCEEEEEeCCCeEEEEECCCCcEEEEEeC--C-----CCCcEEE
Q 011711 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCL-AVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNG--H-----TDAPMSL 362 (479)
Q Consensus 291 g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--h-----~~~v~~~ 362 (479)
..|++-|...++ ....+.+|.+.|.++ .|++-++++|+.|.+|++||++-..++.++.. | ++.|.++
T Consensus 163 c~iy~tdc~~g~-----~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 163 CKIYITDCGRGQ-----GFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred ceEEEeecCCCC-----cceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 778877877664 377889999999987 46799999999999999999999988888742 2 2446666
Q ss_pred EEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCC-----ce
Q 011711 363 LCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSF-----ME 435 (479)
Q Consensus 363 ~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~ 435 (479)
+.+ |++|++|-.|....+||++.+..++.+..|..++.++.++ |.. .++.+++.|..|++-|+... ..
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs----p~a-~yllt~syd~~ikltdlqgdla~el~~ 312 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS----PGA-HYLLTCSYDMKIKLTDLQGDLAHELPI 312 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC----CCc-eEEEEecccceEEEeecccchhhcCce
Confidence 665 8999999999999999999999999999999998888883 654 48999999999999998642 11
Q ss_pred eeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 436 RGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 436 ~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
...-.|+..+..+.|+|.. -+++.+.|.++.+|-+.
T Consensus 313 ~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 313 MVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 2223468889999999999 99999999999999764
No 85
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.7e-24 Score=212.78 Aligned_cols=253 Identities=17% Similarity=0.223 Sum_probs=192.2
Q ss_pred ccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCc----eEE
Q 011711 191 HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSA----EFS 266 (479)
Q Consensus 191 H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~----~~~ 266 (479)
|-..|.....++++..+++++.+.....|+...+..+ +. .-+.++ ...
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v--~~--------------------------~~~~G~~~~~~~~ 70 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV--LK--------------------------HTDYGKLASNPPI 70 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEE--ee--------------------------ccccccCCCCCce
Confidence 4455666667778888999999999999987655322 11 111111 123
Q ss_pred ecCCCccEEEEEEcC-C--EEEEEeCCCcEEEEEccCCCC--CcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeE
Q 011711 267 LDGPVGEVYSMVVAN-E--MLFAGAQDGNILVWKGIPNTQ--NPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTI 338 (479)
Q Consensus 267 ~~~~~~~v~~~~~~~-~--~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I 338 (479)
+.+|.+.|.+++|+| + +|++|+.||.|++||+..... ....++..+.+|...|.+++|+ +++|++++.|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 568999999999997 3 899999999999999976531 1123466789999999999997 4689999999999
Q ss_pred EEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEE
Q 011711 339 RVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVL 416 (479)
Q Consensus 339 ~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 416 (479)
++||+++++.+..+.+|...|.++.|+ +.+|++++.|+.|++||++++..+..+..|...... ...|.+++..++
T Consensus 151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~---~~~w~~~~~~iv 227 (493)
T PTZ00421 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQ---RCLWAKRKDLII 227 (493)
T ss_pred EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcce---EEEEcCCCCeEE
Confidence 999999999999999999999999987 789999999999999999998877777666543321 223457776455
Q ss_pred EEE---eCCCeEEEeecCCCceeeeee---ccCceEEEEECCCc-eEEEEc-CCCcEEEEEeccCC
Q 011711 417 ICS---CNDDSVHLYELPSFMERGRIF---SRREVRVIETGPDG-LFFTGD-GTGMLSVWKILAKP 474 (479)
Q Consensus 417 ~s~---~~dg~v~iwd~~~~~~~~~~~---~~~~v~~l~~s~~g-~l~sg~-~dg~v~vw~~~~~~ 474 (479)
.+| +.|+.|++||+++........ ....+....|++++ +|++++ .||.|++||+.++.
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 544 358999999998765433322 23456667899999 777766 59999999998754
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.9e-25 Score=190.44 Aligned_cols=277 Identities=18% Similarity=0.260 Sum_probs=209.6
Q ss_pred cccCCCCCCCCCCCCCCCCCCCC-CceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeE-
Q 011711 78 HTESQTLPVSNHKKSPPSYNCPK-NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNV- 155 (479)
Q Consensus 78 ~~~~p~~~~~gh~~~i~~~~~s~-~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 155 (479)
-.|+|.++ .+.|..++||| ...+++.||-||+||+|.++..+...|+.. ..+....+
T Consensus 19 d~ev~~pP----~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~-----------------~~~~~PvL~ 77 (347)
T KOG0647|consen 19 DYEVPNPP----EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ-----------------QSHDGPVLD 77 (347)
T ss_pred ceecCCCc----ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh-----------------hccCCCeEE
Confidence 35666665 78899999999 666677999999999998887655444321 12233444
Q ss_pred -EEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCC--EEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 156 -CYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSD--KLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 156 -c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~--~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
|..-.+..+.+|+.|+.+++||+.++ .+..+..|.++|..+.|-+... .|+|||.|++|+.||.+....+.++.+
T Consensus 78 v~WsddgskVf~g~~Dk~~k~wDL~S~--Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L 155 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGGCDKQAKLWDLASG--QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL 155 (347)
T ss_pred EEEccCCceEEeeccCCceEEEEccCC--CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence 44445669999999999999999998 4677889999999999966554 899999999999999998888877764
Q ss_pred CCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeee
Q 011711 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (479)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 312 (479)
+ ..++++.....+++++..+..|.+|+++..... ++.. .
T Consensus 156 P--------------------------------------eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te-~k~~--~ 194 (347)
T KOG0647|consen 156 P--------------------------------------ERVYAADVLYPMAVVATAERHIAVYNLENPPTE-FKRI--E 194 (347)
T ss_pred c--------------------------------------ceeeehhccCceeEEEecCCcEEEEEcCCCcch-hhhh--c
Confidence 3 456777777789999999999999999776432 1111 1
Q ss_pred cCCCCCeEEEEE--cCCEEEEEeCCCeEEEEECCCC--cEEEEEeCCCC---------CcEEEEEc--CCEEEEEeCCCe
Q 011711 313 KGHTRPVTCLAV--GGKRLYSGSMDNTIRVWDLDTL--EAVMTLNGHTD---------APMSLLCW--DQYLLSCSLDNT 377 (479)
Q Consensus 313 ~~h~~~i~~l~~--~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~---------~v~~~~~~--~~~l~s~s~dg~ 377 (479)
..-+-.+.|++. +.+..+.|+-+|.+.|..++.+ +.-.+|+.|.. .|.+++|+ ...|++++.||+
T Consensus 195 SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt 274 (347)
T KOG0647|consen 195 SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT 274 (347)
T ss_pred CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce
Confidence 122334667766 3566699999999999999876 44556676653 25667777 578999999999
Q ss_pred EEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCC
Q 011711 378 IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND 422 (479)
Q Consensus 378 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 422 (479)
..+||-.....+.....+..++.+..+ +.+|..+..+.+.|
T Consensus 275 f~FWDkdar~kLk~s~~~~qpItcc~f----n~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 275 FSFWDKDARTKLKTSETHPQPITCCSF----NRNGSIFAYALGYD 315 (347)
T ss_pred EEEecchhhhhhhccCcCCCccceeEe----cCCCCEEEEEeecc
Confidence 999999888777777788888777666 58888555555544
No 87
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=192.86 Aligned_cols=237 Identities=19% Similarity=0.247 Sum_probs=194.5
Q ss_pred CCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEec--c
Q 011711 83 TLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW--L 160 (479)
Q Consensus 83 ~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~--~ 160 (479)
.-.|..|..+|+++|++ |.|+||||.|-+|+|+|.+...+. .. +-.|.+.+.|..+ .
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql----g~---------------ll~HagsitaL~F~~~ 94 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL----GI---------------LLSHAGSITALKFYPP 94 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh----cc---------------eeccccceEEEEecCC
Confidence 34568899999999974 789999999999999987765431 11 1122233444333 3
Q ss_pred CC--eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCce--
Q 011711 161 SG--NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV-- 236 (479)
Q Consensus 161 ~~--~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~-- 236 (479)
.+ .+++|++||.|.+|+...- +++..+++|++.|+.++.+|.+++.++.+.|+.++.||+-.|+.-...++....
T Consensus 95 ~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~ 173 (362)
T KOG0294|consen 95 LSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATL 173 (362)
T ss_pred cchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCccee
Confidence 33 7999999999999999776 999999999999999999999999999999999999999999887777765543
Q ss_pred eEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCC
Q 011711 237 GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH 315 (479)
Q Consensus 237 ~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h 315 (479)
..+.+.|..++.+..+.|-+|.+++...+........+.++.|... .|++|..|+.|.+||.+... +...+.+|
T Consensus 174 v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~-----~~~~~~AH 248 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDT-----PLTEFLAH 248 (362)
T ss_pred eEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCc-----cceeeecc
Confidence 4445689999999999999999999887765555567788888766 99999999999999987743 57888999
Q ss_pred CCCeEEEEEc----CCEEEEEeCCCeEEEEECCCC
Q 011711 316 TRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTL 346 (479)
Q Consensus 316 ~~~i~~l~~~----~~~l~sgs~dg~I~iwd~~~~ 346 (479)
...|..+.+- +.+|+|++.||.|++||++..
T Consensus 249 ~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 249 ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred hhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9999999962 579999999999999999875
No 88
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.7e-26 Score=200.03 Aligned_cols=278 Identities=17% Similarity=0.267 Sum_probs=215.1
Q ss_pred eeeEEEecccccEEEEEeCCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCC-ceeEEEe-CCCEEEEEcCCeEEEEEc
Q 011711 183 TMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGA-EVGSLIC-EGPWVFVGMPNVVKAWHI 259 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~-~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~i~v~~~ 259 (479)
..+..|.||.+.|.+++=+|.. ..++||+.||.|+|||+...++...+..+. .+..+.. .+.++.+|.|++|+.|.+
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence 4567789999999999999987 789999999999999999999999998766 5555554 466788899999999998
Q ss_pred CCCceEEecCCCccEEEEEEc--CCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeC
Q 011711 260 ESSAEFSLDGPVGEVYSMVVA--NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSM 334 (479)
Q Consensus 260 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~ 334 (479)
+.....+.. ....+..+.-+ .+.+++++++ |.|||..... ++..+.--.+.|.++.|+ ...|+++.+
T Consensus 137 ~~~p~~til-g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-----Pv~smswG~Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 137 DGPPLHTIL-GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-----PVSSMSWGADSISSVKFNPVETSILASCAS 208 (433)
T ss_pred cCCcceeee-ccccccccccccccccccccCce--eeecccccCC-----ccceeecCCCceeEEecCCCcchheeeecc
Confidence 875333222 23344445443 3377777764 9999987654 466777778889999998 567888999
Q ss_pred CCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcc-eEEeccccCccceEEEeeeeCCC
Q 011711 335 DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN-LEVAYTHNEDHGVLALGGLNDPD 411 (479)
Q Consensus 335 dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 411 (479)
|+.|.+||+++.++++.+.. .-....++|+ .-.++++++|..++.||++.... +.....|. ...+...++|.
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv----sAV~dVdfspt 283 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV----SAVMDVDFSPT 283 (433)
T ss_pred CCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccc----eeEEEeccCCC
Confidence 99999999999999877652 2234556666 45688999999999999986543 22222333 33455666899
Q ss_pred CCcEEEEEeCCCeEEEeecCCCceeeeeec--cCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 412 GNPVLICSCNDDSVHLYELPSFMERGRIFS--RREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 412 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
|+ -+++|+.|.+|+||..+.+........ ...|.++.|+.|. ++++|++|+.|++|.-...+
T Consensus 284 G~-EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 284 GQ-EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred cc-hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 98 788999999999999988766544433 5779999999999 99999999999999976543
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.7e-25 Score=200.75 Aligned_cols=257 Identities=24% Similarity=0.391 Sum_probs=206.2
Q ss_pred eEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCce
Q 011711 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (479)
Q Consensus 185 ~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~ 264 (479)
...+..|.-+|++++++|++++.++++.|++|.-|++.+++....+-....+.. ......
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k--------------------~~~~~~ 194 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLK--------------------SHGNPL 194 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhh--------------------hccCCC
Confidence 567788999999999999999999999999999999999986532211111100 000000
Q ss_pred EEe-cCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEE
Q 011711 265 FSL-DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIR 339 (479)
Q Consensus 265 ~~~-~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~ 339 (479)
... ..|...+.+++.+++ +|++|+.|..|.||+..+.. .+..+.+|.+.|.+++|- .+.+++++.|++|+
T Consensus 195 k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e-----hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvk 269 (479)
T KOG0299|consen 195 KESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE-----HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVK 269 (479)
T ss_pred CcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc-----hhhcccccccceeeeeeecCccceeeeecCCceE
Confidence 111 378999999999988 99999999999999998854 477799999999999995 67899999999999
Q ss_pred EEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEE
Q 011711 340 VWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLI 417 (479)
Q Consensus 340 iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 417 (479)
+|+++....+.++-+|.+.|..+... +..+-+|+.|.++++|++.... ...+..+...+.++++. +.. .++
T Consensus 270 vw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~I-----n~~-Hfv 342 (479)
T KOG0299|consen 270 VWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFI-----NDE-HFV 342 (479)
T ss_pred EEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEe-----ccc-cee
Confidence 99999999999999999999999887 5566667799999999995433 33444555556666663 333 689
Q ss_pred EEeCCCeEEEeecCCCceeeeeec-----c--------CceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 418 CSCNDDSVHLYELPSFMERGRIFS-----R--------REVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 418 s~~~dg~v~iwd~~~~~~~~~~~~-----~--------~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
+|+.+|.|.+|++-..+++..... . ..|++++..|.. ++++|+.+|.|++|.+.++
T Consensus 343 sGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 999999999999998887766541 1 268999999988 9999999999999999886
No 90
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=3.2e-25 Score=203.53 Aligned_cols=301 Identities=17% Similarity=0.249 Sum_probs=221.1
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCee
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 164 (479)
.+++|+.-|.++++.|.|-+++|||.|.+++.||+.+-....+.
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~------------------------------------ 205 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS------------------------------------ 205 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh------------------------------------
Confidence 55888888999999999999999999999999975543220000
Q ss_pred EeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCC
Q 011711 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (479)
++.+... ....|.++.|++.|..|+..+.....+|+|-...+.........-+.
T Consensus 206 -----------------fr~l~P~--E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~------- 259 (641)
T KOG0772|consen 206 -----------------FRQLQPC--ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIR------- 259 (641)
T ss_pred -----------------hhccCcc--cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhh-------
Confidence 0222222 24578999999999999999999999999965444443333222221
Q ss_pred EEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceee--ecCCCCCe
Q 011711 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAAL--LKGHTRPV 319 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~--~~~h~~~i 319 (479)
|+ ....+|...+++-+|+|. .+++++.||++++||+...... .+.+.. ..+..-++
T Consensus 260 -------------Dm-----~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 260 -------------DM-----YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-LQVIKTKPAGGKRVPV 320 (641)
T ss_pred -------------hh-----hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-eeEEeeccCCCcccCc
Confidence 11 235689999999999987 8999999999999999876432 222222 22445678
Q ss_pred EEEEEc--CCEEEEEeCCCeEEEEECCCCcE---EEEEeCCCC--CcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceE
Q 011711 320 TCLAVG--GKRLYSGSMDNTIRVWDLDTLEA---VMTLNGHTD--APMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLE 390 (479)
Q Consensus 320 ~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (479)
++++|+ ++.+++|..||.|.+|+..+... ...-.+|.. .|+++.|+ |++|++-+.|+++++||+++.+...
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL 400 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccch
Confidence 899997 89999999999999999865322 333457777 79999988 8999999999999999999765432
Q ss_pred Eec-cccCccceEEEeeeeCCCCCcEEEEEe------CCCeEEEeecCCCceeeeeec-cCceEEEEECCCc-eEEEEcC
Q 011711 391 VAY-THNEDHGVLALGGLNDPDGNPVLICSC------NDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG-LFFTGDG 461 (479)
Q Consensus 391 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g-~l~sg~~ 461 (479)
... ..... .-...+.|+|+.+ +|++|. ..|.+.+||..+.+.+..+.- ...|..+.|+|.- .|++|+.
T Consensus 401 ~~~tgL~t~--~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 401 NVRTGLPTP--FPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred hhhcCCCcc--CCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence 222 21111 1122344579988 888874 357899999999999888875 7789999999987 9999999
Q ss_pred CCcEEEEE
Q 011711 462 TGMLSVWK 469 (479)
Q Consensus 462 dg~v~vw~ 469 (479)
||.+++|=
T Consensus 478 dG~~~vyY 485 (641)
T KOG0772|consen 478 DGTAHVYY 485 (641)
T ss_pred CCceEEEE
Confidence 99999873
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.6e-23 Score=181.28 Aligned_cols=274 Identities=15% Similarity=0.229 Sum_probs=213.5
Q ss_pred ccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCC--CEEEEEcCCeEEEEEcCCCceEEec
Q 011711 191 HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG--PWVFVGMPNVVKAWHIESSAEFSLD 268 (479)
Q Consensus 191 H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~i~v~~~~~~~~~~~~ 268 (479)
.++.|+++.|+|.++.|+.+++||++++||+...+....+.+..++....+.+ ..++.+.|+.|+.+|++++....+.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec
Confidence 36789999999999999999999999999999999999999999988777643 5666779999999999999999999
Q ss_pred CCCccEEEEEEcC--CEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCC
Q 011711 269 GPVGEVYSMVVAN--EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTL 346 (479)
Q Consensus 269 ~~~~~v~~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~ 346 (479)
.|...|.++...+ +.+++|+.|++|++||.+.... ...+. ....|.|+...++.|++|+.|..|.+||+++.
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~-----~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV-----VGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEecccccc-----ccccc-cCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 9999999999984 4999999999999999886322 22222 34489999999999999999999999999986
Q ss_pred cEEEEEeC--CCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCC----cceEEeccccC---------ccceEEEeeeeC
Q 011711 347 EAVMTLNG--HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE----GNLEVAYTHNE---------DHGVLALGGLND 409 (479)
Q Consensus 347 ~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~---------~~~~~~~~~~~~ 409 (479)
....+... -.-.+.+++.. +.=.+.++-||.|.+=.++.. .....+..|.. ++..+++ +
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F----h 241 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF----H 241 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe----c
Confidence 65442221 12235566655 466888899999988777655 22223333322 2333333 5
Q ss_pred CCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc-eEEEEcC-----CCc-------EEEEEeccCCC
Q 011711 410 PDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG-LFFTGDG-----TGM-------LSVWKILAKPN 475 (479)
Q Consensus 410 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g-~l~sg~~-----dg~-------v~vw~~~~~~~ 475 (479)
|--. .+++|+.||.|.+||+.+.+.+..+.. +..|.+++|+.+| .||.++. ... |.|.++.+.+.
T Consensus 242 p~~~-tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~e~ 320 (323)
T KOG1036|consen 242 PIHG-TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLTDYET 320 (323)
T ss_pred cccc-eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEEecccccc
Confidence 6544 799999999999999999888888776 5779999999999 8888764 223 66666655443
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.5e-24 Score=183.97 Aligned_cols=258 Identities=19% Similarity=0.315 Sum_probs=198.6
Q ss_pred eeEeCCCCCeEEEeecCCC-----------ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 011711 163 NCVKGDECRFWHSWFCGEG-----------FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~-----------~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 231 (479)
.++.|+....|.-+++... +.++..+..|.++|++++.+ +.++||||.|.+|+|||+.+......+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l- 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL- 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-
Confidence 3556666666666665422 23467788999999999985 999999999999999999887766543
Q ss_pred cCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC----EEEEEeCCCcEEEEEccCCCCCccc
Q 011711 232 LGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQ 307 (479)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~ 307 (479)
..|.+.|+++.|.+. .|++|+.||.|.+|+... ++
T Consensus 80 ------------------------------------l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-----W~ 118 (362)
T KOG0294|consen 80 ------------------------------------LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-----WE 118 (362)
T ss_pred ------------------------------------eccccceEEEEecCCcchhheeeecCCCcEEEEEcCC-----eE
Confidence 358889999999876 799999999999999766 77
Q ss_pred ceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEc
Q 011711 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 308 ~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (479)
....+++|...|+.++.+ +++.++.+.|+.+++||+-+|+.-..++..... ..+.|. |++++.++.+ .|-+|.+
T Consensus 119 ~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a-t~v~w~~~Gd~F~v~~~~-~i~i~q~ 196 (362)
T KOG0294|consen 119 LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA-TLVSWSPQGDHFVVSGRN-KIDIYQL 196 (362)
T ss_pred EeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc-eeeEEcCCCCEEEEEecc-EEEEEec
Confidence 899999999999999997 888899999999999999998876655432221 225555 7877777765 5899988
Q ss_pred CCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEEC--CCc-eEEEE
Q 011711 384 TEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETG--PDG-LFFTG 459 (479)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s--~~g-~l~sg 459 (479)
.+......+... ...++.. + -++. .+++|+.|+.|.+||.++..+...+. |...|.++.+- |++ +|+|+
T Consensus 197 d~A~v~~~i~~~---~r~l~~~--~-l~~~-~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTa 269 (362)
T KOG0294|consen 197 DNASVFREIENP---KRILCAT--F-LDGS-ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTA 269 (362)
T ss_pred ccHhHhhhhhcc---ccceeee--e-cCCc-eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEe
Confidence 776544333322 1222221 1 3444 78889999999999999877777665 57889998853 456 99999
Q ss_pred cCCCcEEEEEeccC
Q 011711 460 DGTGMLSVWKILAK 473 (479)
Q Consensus 460 ~~dg~v~vw~~~~~ 473 (479)
++||.|+|||+...
T Consensus 270 SSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 270 SSDGFIKVWDIDME 283 (362)
T ss_pred ccCceEEEEEcccc
Confidence 99999999999775
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.7e-25 Score=195.77 Aligned_cols=272 Identities=15% Similarity=0.179 Sum_probs=211.0
Q ss_pred eEEEeccC-CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 154 NVCYHWLS-GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 154 ~~c~~~~~-~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
++..++.. ..+++|+.||.|++||+.+. .++..+++|.+.|..|++.. ..++|++.|.+|+.|.++- ....++..
T Consensus 71 ~lakhp~~ls~~aSGs~DG~VkiWnlsqR-~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg 146 (433)
T KOG0268|consen 71 CLAKHPNKLSTVASGSCDGEVKIWNLSQR-ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG 146 (433)
T ss_pred hhhcCcchhhhhhccccCceEEEEehhhh-hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec
Confidence 33344544 57899999999999999888 88999999999999999976 7799999999999999875 46666666
Q ss_pred CCceeEEEe-CCCEEEEEcCCeEEEEEcCCCceE-EecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCccc
Q 011711 233 GAEVGSLIC-EGPWVFVGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQ 307 (479)
Q Consensus 233 ~~~~~~~~~-~~~~l~~~~~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~ 307 (479)
...+..+.. ...-+++.....|.+||.+....+ ++.-....|.++.++|. .|++++.|+.|.+||++++... .+
T Consensus 147 ~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl-~K 225 (433)
T KOG0268|consen 147 KSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPL-KK 225 (433)
T ss_pred cccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcc-ce
Confidence 655555554 334456667778999999776654 45566778999999986 8888999999999999988652 11
Q ss_pred ceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEE
Q 011711 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWI 382 (479)
Q Consensus 308 ~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd 382 (479)
.+. ...-+.|+|+ .-.|++|++|..++.||++.. +++....+|.+.|+++.++ |+-+++||.|.+|+||.
T Consensus 226 Vi~-----~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 226 VIL-----TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFP 300 (433)
T ss_pred eee-----eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEee
Confidence 111 1223567887 566889999999999999874 5678889999999999998 89999999999999999
Q ss_pred cCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee
Q 011711 383 MTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI 439 (479)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 439 (479)
++.+......... . ..-.++..|+.|.+ ++++|++|+.|++|..+..+.+..+
T Consensus 301 ~~~~~SRdiYhtk-R--Mq~V~~Vk~S~Dsk-yi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 301 VNHGHSRDIYHTK-R--MQHVFCVKYSMDSK-YIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred cCCCcchhhhhHh-h--hheeeEEEEecccc-EEEecCCCcceeeeecchhhhcCCC
Confidence 9876543333222 1 12345556778887 9999999999999998766555443
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=189.65 Aligned_cols=271 Identities=17% Similarity=0.259 Sum_probs=216.9
Q ss_pred CeEEEeccC--CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 011711 153 KNVCYHWLS--GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (479)
Q Consensus 153 ~~~c~~~~~--~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~ 230 (479)
....+.... +.+.+|+.|..+.++|...+ +.+..|+||...|+++.|+++...+++++.|..|+||.........
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~-- 297 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT-- 297 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc--
Confidence 344444444 68899999999999999888 8999999999999999999999999999999999999987654332
Q ss_pred ecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccc
Q 011711 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQL 308 (479)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~ 308 (479)
....|...|+.+..++. +|++++.||+..+.|++++.. +
T Consensus 298 -----------------------------------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~----l 338 (506)
T KOG0289|consen 298 -----------------------------------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ----L 338 (506)
T ss_pred -----------------------------------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE----E
Confidence 23458888988888766 999999999999999998864 1
Q ss_pred eeee-cCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEc
Q 011711 309 AALL-KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 309 ~~~~-~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (479)
.... +...-.+++.+|+ |..|.+|..||.|+|||+.++..+..|.+|+++|..+.|. |-+|++++.|+.|++||+
T Consensus 339 t~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 339 TVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred EEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 2211 1234568899996 8889999999999999999999999999999999999998 668999999999999999
Q ss_pred CCCcceEEeccccC-ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC--CCceeeeee-ccCceEEEEECCCc-eEEE
Q 011711 384 TEEGNLEVAYTHNE-DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP--SFMERGRIF-SRREVRVIETGPDG-LFFT 458 (479)
Q Consensus 384 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~-~~~~v~~l~~s~~g-~l~s 458 (479)
+..+....+..... ++..+.+ ++.|. +|+.++.|=+|++++-. +..++..+. +.+..+.+.|.... ++++
T Consensus 419 RKl~n~kt~~l~~~~~v~s~~f----D~SGt-~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s 493 (506)
T KOG0289|consen 419 RKLKNFKTIQLDEKKEVNSLSF----DQSGT-YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLAS 493 (506)
T ss_pred hhhcccceeeccccccceeEEE----cCCCC-eEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEee
Confidence 98876665554332 3444444 58888 67777777667776643 334444443 35688999999888 9999
Q ss_pred EcCCCcEEEEEe
Q 011711 459 GDGTGMLSVWKI 470 (479)
Q Consensus 459 g~~dg~v~vw~~ 470 (479)
++.|..++++.+
T Consensus 494 ~smd~~l~~~a~ 505 (506)
T KOG0289|consen 494 TSMDAILRLYAL 505 (506)
T ss_pred ccchhheEEeec
Confidence 999999988865
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-24 Score=181.62 Aligned_cols=239 Identities=23% Similarity=0.280 Sum_probs=189.6
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecCCCc--eeeEEEecccccEEEEEeCC--CCCEEEEEeCCCcEEEEECCCCceEEE
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGF--TMLAKLEGHKKAVSGIALPL--RSDKLYSGSRDGTVQLWDCHTGQSASV 229 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~~~~--~~~~~~~~H~~~V~~l~~s~--~~~~l~s~s~Dg~v~vwd~~~~~~~~~ 229 (479)
..-..+.+.+++|++.|++|+|+.+.... +++.+|.||.++|..++|.. -|.+||+++.||.|.||.-+.++-.+.
T Consensus 16 da~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~ 95 (299)
T KOG1332|consen 16 DAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA 95 (299)
T ss_pred HhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh
Confidence 34456678899999999999999998664 78999999999999999943 799999999999999999887743222
Q ss_pred EecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC----EEEEEeCCCcEEEEEccCCCCCc
Q 011711 230 INLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNP 305 (479)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~ 305 (479)
.....|...|++++|.|. .|++++.||.|.+.+.+....
T Consensus 96 -----------------------------------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-- 138 (299)
T KOG1332|consen 96 -----------------------------------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-- 138 (299)
T ss_pred -----------------------------------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC--
Confidence 234468999999999987 899999999999999887622
Q ss_pred ccceeeecCCCCCeEEEEEc-----C-----------CEEEEEeCCCeEEEEECCCCc--EEEEEeCCCCCcEEEEEcC-
Q 011711 306 FQLAALLKGHTRPVTCLAVG-----G-----------KRLYSGSMDNTIRVWDLDTLE--AVMTLNGHTDAPMSLLCWD- 366 (479)
Q Consensus 306 ~~~~~~~~~h~~~i~~l~~~-----~-----------~~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~~~v~~~~~~~- 366 (479)
.........|...|+++++. | ..|++|+.|..|+||+..+++ ...++.+|.+.|..+++.+
T Consensus 139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence 33455678899999999984 2 569999999999999998753 4456899999999998873
Q ss_pred -----CEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC
Q 011711 367 -----QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 367 -----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 431 (479)
.+|++++.||++.||..+......... ...+.........|+..|+ +|+.++.|+.|.+|.-+
T Consensus 219 ~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~t-ll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 219 VGLPKSTIASCSQDGTVIIWTKDEEYEPWKKT-LLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cCCCceeeEEecCCCcEEEEEecCccCccccc-ccccCCcceEEEEEecccc-EEEEecCCcEEEEEEeC
Confidence 589999999999999876432221111 1122344456666788898 88888899999999754
No 96
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.1e-22 Score=200.97 Aligned_cols=220 Identities=14% Similarity=0.206 Sum_probs=162.7
Q ss_pred eEEEEEcCCCce-EEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCC---cccceeeecCCCCCeEEEEEc
Q 011711 253 VVKAWHIESSAE-FSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQN---PFQLAALLKGHTRPVTCLAVG 325 (479)
Q Consensus 253 ~i~v~~~~~~~~-~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~---~~~~~~~~~~h~~~i~~l~~~ 325 (479)
.+++|+...... ..+.+|.+.|.+++|+|+ +|++|+.||.|++||+.+.... ...+...+.+|...|.+++|+
T Consensus 55 vI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~ 134 (568)
T PTZ00420 55 AIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWN 134 (568)
T ss_pred EEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEEC
Confidence 344454433322 346689999999999974 8999999999999999764311 012345678999999999997
Q ss_pred --CC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccc
Q 011711 326 --GK-RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHG 400 (479)
Q Consensus 326 --~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 400 (479)
+. .+++++.|++|++||+++++.+..+. |...|.++.|+ |.+|++++.|+.|+|||++++..+..+..|.....
T Consensus 135 P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~ 213 (568)
T PTZ00420 135 PMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKN 213 (568)
T ss_pred CCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCce
Confidence 44 46799999999999999999888876 56779999887 78999999999999999999988877777776544
Q ss_pred eEEEe-eeeCCCCCcEEEEEeCC----CeEEEeecCC-CceeeeeeccCc---eEEEEECCCc-eEEEEcCCCcEEEEEe
Q 011711 401 VLALG-GLNDPDGNPVLICSCND----DSVHLYELPS-FMERGRIFSRRE---VRVIETGPDG-LFFTGDGTGMLSVWKI 470 (479)
Q Consensus 401 ~~~~~-~~~~~~~~~~l~s~~~d----g~v~iwd~~~-~~~~~~~~~~~~---v~~l~~s~~g-~l~sg~~dg~v~vw~~ 470 (479)
...+. ..+++++. ++++++.| ++|+|||++. .+.+........ +......++| ++++|+.|+.|++|++
T Consensus 214 s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 214 TKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred eEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 33332 23457777 55555555 3799999985 455555444332 2333334557 8899999999999999
Q ss_pred ccCC
Q 011711 471 LAKP 474 (479)
Q Consensus 471 ~~~~ 474 (479)
..+.
T Consensus 293 ~~~~ 296 (568)
T PTZ00420 293 SLGS 296 (568)
T ss_pred cCCc
Confidence 7653
No 97
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.8e-23 Score=198.92 Aligned_cols=377 Identities=15% Similarity=0.198 Sum_probs=262.8
Q ss_pred CCCCCCCCCCceeccCCCCCCccccccccCCCCCC---CCCCc-cccccCcC--------CCC--Ceeeeeec-------
Q 011711 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTV---PNKSS-LDCSTGSD--------DSG--SKRTLERT------- 150 (479)
Q Consensus 92 ~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~---~~~~~-~~~~~~~~--------~~~--~~~~~~~~------- 150 (479)
.|.+++|+-||.|..+.+ ...|++|.++...... |.... -.+...++ ..+ ...++.-.
T Consensus 167 ~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvE 245 (1080)
T KOG1408|consen 167 VVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVE 245 (1080)
T ss_pred eEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceee
Confidence 556788999999999998 8899999988865221 11100 00000000 000 00111100
Q ss_pred --------------CCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEe--------------------ccc----
Q 011711 151 --------------TPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLE--------------------GHK---- 192 (479)
Q Consensus 151 --------------~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~--------------------~H~---- 192 (479)
....-|.......++.|..+|+|++++.++- ..+.++. +-.
T Consensus 246 FSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL-~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f 324 (1080)
T KOG1408|consen 246 FSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETL-DYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF 324 (1080)
T ss_pred echhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchh-hhccccccccccccchhhcccccccccccCcccC
Confidence 1113345556678889999999999998753 2222211 111
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceE----EEEecCC--------------ceeEEEeCCCEEEEEcCCeE
Q 011711 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA----SVINLGA--------------EVGSLICEGPWVFVGMPNVV 254 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~----~~~~~~~--------------~~~~~~~~~~~l~~~~~~~i 254 (479)
-...++.|++..+.|...-.|..+.|||+..-+.+ ..+.+.. +..+..+.+-++.++.|++|
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI 404 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI 404 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence 12356778989999999999999999999764322 2222222 22223346678888999999
Q ss_pred EEEEcCCCc---eE-----------------------------------EecCCCccEEEEEEcCC--EEEEEeCCCcEE
Q 011711 255 KAWHIESSA---EF-----------------------------------SLDGPVGEVYSMVVANE--MLFAGAQDGNIL 294 (479)
Q Consensus 255 ~v~~~~~~~---~~-----------------------------------~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~ 294 (479)
++|+++... .+ ..-+....+.+++++|+ +|++|..-|.++
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR 484 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence 999987621 10 11123346889999998 999999999999
Q ss_pred EEEccCCCCCcccceeeecCCCCCeEEEEEc-----CCEEEEEeCCCeEEEEECCC-CcEEEEEeCCCCCcEEEEEc--C
Q 011711 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-----GKRLYSGSMDNTIRVWDLDT-LEAVMTLNGHTDAPMSLLCW--D 366 (479)
Q Consensus 295 iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-----~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~v~~~~~~--~ 366 (479)
+|++..- +....+++|..+|.|+.++ .++|++++.|.-|.+||+.. ..+++++.+|+..|+++.|- |
T Consensus 485 Vy~Lq~l-----~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g 559 (1080)
T KOG1408|consen 485 VYDLQEL-----EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG 559 (1080)
T ss_pred EEEehhh-----hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC
Confidence 9999774 3466789999999999997 56899999999999999864 67789999999999999987 2
Q ss_pred --CEEEEEeCCCeEEEEEcCCCcceEEeccccCcc-ceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec--
Q 011711 367 --QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDH-GVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-- 441 (479)
Q Consensus 367 --~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-- 441 (479)
..+++++.|..|.+=.......-..+..+.... .........+|..+ ++++++.|..|+|||+.+++....+..
T Consensus 560 ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sgKq~k~FKgs~ 638 (1080)
T KOG1408|consen 560 LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESGKQVKSFKGSR 638 (1080)
T ss_pred CceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccccceeeeecccc
Confidence 679999999877654333222222222222211 11122233357777 899999999999999999999988874
Q ss_pred --cCceEEEEECCCc-eEEEEcCCCcEEEEEeccCCCC
Q 011711 442 --RREVRVIETGPDG-LFFTGDGTGMLSVWKILAKPNA 476 (479)
Q Consensus 442 --~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~~ 476 (479)
++...-+...|.| +|++.+.|.++.++|+.+++..
T Consensus 639 ~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 639 DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV 676 (1080)
T ss_pred cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh
Confidence 5778999999999 9999999999999999987754
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.2e-24 Score=185.18 Aligned_cols=249 Identities=20% Similarity=0.351 Sum_probs=205.6
Q ss_pred ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCC
Q 011711 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIES 261 (479)
Q Consensus 182 ~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~ 261 (479)
+.+++.|.||++.|..++-......+.+++.|.+.+||.+++|.|+..+.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~------------------------------ 187 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT------------------------------ 187 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec------------------------------
Confidence 37788999999999999998888899999999999999999999987664
Q ss_pred CceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEc------cCCCC-----------------------------C
Q 011711 262 SAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKG------IPNTQ-----------------------------N 304 (479)
Q Consensus 262 ~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~------~~~~~-----------------------------~ 304 (479)
+|.+.|+++.|++. ++++++.|++-.||.. ..+.. .
T Consensus 188 -------GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t 260 (481)
T KOG0300|consen 188 -------GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT 260 (481)
T ss_pred -------ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence 68888888888876 7788888888888862 11000 0
Q ss_pred cccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEE
Q 011711 305 PFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKV 380 (479)
Q Consensus 305 ~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~i 380 (479)
-..++..+.+|...|.+..|- ++.+++++.|.+..+||+++++++..+.+|....+.+... .+++++.+.|.+.++
T Consensus 261 iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRL 340 (481)
T KOG0300|consen 261 IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRL 340 (481)
T ss_pred eeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEe
Confidence 012345678899999998884 8999999999999999999999999999999988777666 568889999999999
Q ss_pred EEcCCC-cceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc-eeeeeeccCceEEEEECCCc-eEE
Q 011711 381 WIMTEE-GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM-ERGRIFSRREVRVIETGPDG-LFF 457 (479)
Q Consensus 381 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~v~~l~~s~~g-~l~ 457 (479)
||++.. ..+..+.+|...+....|. .+.+ +++|+.|.+|++||++++. .+..+....+++.++++..+ .|+
T Consensus 341 WDFReaI~sV~VFQGHtdtVTS~vF~----~dd~--vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIA 414 (481)
T KOG0300|consen 341 WDFREAIQSVAVFQGHTDTVTSVVFN----TDDR--VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIA 414 (481)
T ss_pred ccchhhcceeeeecccccceeEEEEe----cCCc--eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEE
Confidence 999854 3455677788877776663 5554 8999999999999998864 57777789999999999988 888
Q ss_pred EEcCCCcEEEEEeccC
Q 011711 458 TGDGTGMLSVWKILAK 473 (479)
Q Consensus 458 sg~~dg~v~vw~~~~~ 473 (479)
.--++..|++||++-.
T Consensus 415 iPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 415 IPHDNRQVRLFDLNGN 430 (481)
T ss_pred eccCCceEEEEecCCC
Confidence 8888999999999754
No 99
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.5e-22 Score=190.49 Aligned_cols=268 Identities=18% Similarity=0.226 Sum_probs=210.6
Q ss_pred CCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecC---CCeEEEeccCCeeEeCC
Q 011711 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTT---PKNVCYHWLSGNCVKGD 168 (479)
Q Consensus 92 ~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~c~~~~~~~~~~g~ 168 (479)
.|.++|+|.+...||.+.+||+|.||++...-+. ..++++.. .+.+|.. .+.++.+.+
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~------------------~~vi~g~~drsIE~L~W~-e~~RLFS~g 87 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL------------------EPVIHGPEDRSIESLAWA-EGGRLFSSG 87 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCcee------------------eEEEecCCCCceeeEEEc-cCCeEEeec
Confidence 4599999999999999999999999987664331 11222211 1344544 477999999
Q ss_pred CCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC---CceeEEEe--CC
Q 011711 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG---AEVGSLIC--EG 243 (479)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~---~~~~~~~~--~~ 243 (479)
-+|.|.-||+.+. +....+....++|.+++.+|.+..++.|+.||.+...+...++......+. ..+.++.+ ++
T Consensus 88 ~sg~i~EwDl~~l-k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 88 LSGSITEWDLHTL-KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG 166 (691)
T ss_pred CCceEEEEecccC-ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc
Confidence 9999999999998 788888889999999999999999999999998888898888776655543 44566665 45
Q ss_pred CEEEEE-cCCeEEEEEcCCCceEE-----ecC----CCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeee
Q 011711 244 PWVFVG-MPNVVKAWHIESSAEFS-----LDG----PVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (479)
Q Consensus 244 ~~l~~~-~~~~i~v~~~~~~~~~~-----~~~----~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 312 (479)
..+++| .|+.|++||..++.... ..+ ...-|+++.+-.+ .|++|...|+|.+||...++ +.+..
T Consensus 167 ~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT-----LiqS~ 241 (691)
T KOG2048|consen 167 TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT-----LIQSH 241 (691)
T ss_pred cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc-----hhhhh
Confidence 545555 78889999999988764 221 3345677776655 99999999999999988865 47778
Q ss_pred cCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcE----EEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcC
Q 011711 313 KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA----VMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 313 ~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~ 384 (479)
..|...|.||+.+ ++++++++.|+.|..|...+.+. ......|...+.+++..+..+++|+.|..+.+-..+
T Consensus 242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 242 SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSR 319 (691)
T ss_pred hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEcccc
Confidence 8999999999996 78999999999999998877644 223356788899999988899999999887776443
No 100
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.1e-24 Score=196.23 Aligned_cols=232 Identities=21% Similarity=0.293 Sum_probs=188.4
Q ss_pred cccEEEEEeCCCCCE-EEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCC
Q 011711 192 KKAVSGIALPLRSDK-LYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGP 270 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~-l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~ 270 (479)
.+.|++++|+|...+ +|+.+. -.+.+|+..+......+ ...
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-------------------------------------srF 67 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-------------------------------------SRF 67 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-------------------------------------Hhh
Confidence 478999999996654 333332 46889987765544333 234
Q ss_pred CccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCC
Q 011711 271 VGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDT 345 (479)
Q Consensus 271 ~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~ 345 (479)
...++++.|-.| ++++|...|.|++||+.+. .++..+.+|+.+|..+.|+ +..+++|+.|+.+++||+.+
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-----~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-----VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccH-----HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 566788888755 8999999999999996552 3577889999999999986 77899999999999999999
Q ss_pred CcEEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCC
Q 011711 346 LEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND 422 (479)
Q Consensus 346 ~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 422 (479)
...+..+.+|++.|.+.++. +.++++|+.||.|++||.+..........|..++..+.+. |.|. ++++++ .
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~l----psgs-~iasAg-G 216 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLAL----PSGS-LIASAG-G 216 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEc----CCCC-EEEEcC-C
Confidence 98877999999999999998 4589999999999999999886666666777777766664 8877 677664 5
Q ss_pred CeEEEeecC-CCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 423 DSVHLYELP-SFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 423 g~v~iwd~~-~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
+.|++||+. .++.+.... |...|+|+.+..++ .|++|+-||.|++|++.+
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccc
Confidence 689999998 455666665 79999999999999 999999999999999654
No 101
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9e-25 Score=195.48 Aligned_cols=240 Identities=17% Similarity=0.218 Sum_probs=192.0
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCee
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 164 (479)
++.||..+|.-+.||||.+||.+++.|..+++||..+......... + .+....++|..+.+-.+
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~------~----------~~~S~~sc~W~pDg~~~ 327 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS------G----------LGFSVSSCAWCPDGFRF 327 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc------C----------cCCCcceeEEccCCcee
Confidence 6799999999999999999999999999999998877653111110 0 02233466667777799
Q ss_pred EeCCCCCeEEEeecCCCceeeEEEeccc-ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCC
Q 011711 165 VKGDECRFWHSWFCGEGFTMLAKLEGHK-KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (479)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~~~~H~-~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
++|+.|+.|..||++.. .+...++-. ..|.+++.++||+++++...|..|++++.++......+.
T Consensus 328 V~Gs~dr~i~~wdlDgn--~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis------------ 393 (519)
T KOG0293|consen 328 VTGSPDRTIIMWDLDGN--ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS------------ 393 (519)
T ss_pred EecCCCCcEEEecCCcc--hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc------------
Confidence 99999999999999754 344455533 569999999999999999999999999988765443332
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeE-
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT- 320 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~- 320 (479)
....|+++..+.+ ++++--.+..+.+||+.... ++..+.+|+..-.
T Consensus 394 --------------------------e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~-----lv~kY~Ghkq~~fi 442 (519)
T KOG0293|consen 394 --------------------------EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK-----LVRKYFGHKQGHFI 442 (519)
T ss_pred --------------------------ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh-----HHHHhhcccccceE
Confidence 4456778888877 78888899999999998543 4677888876533
Q ss_pred -EEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCC
Q 011711 321 -CLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 321 -~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~ 385 (479)
.-+|. ..++++||+|+.|+||+..+++++..+.+|...|.+++++ ..++++++.||+|+||....
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 33443 5789999999999999999999999999999999999998 46899999999999997654
No 102
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.2e-23 Score=181.32 Aligned_cols=237 Identities=18% Similarity=0.243 Sum_probs=182.7
Q ss_pred ccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCC-ceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEec
Q 011711 191 HKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTG-QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLD 268 (479)
Q Consensus 191 H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~ 268 (479)
-++.|.+|+||| ...+++.+|.|++||+|+++.. ..+. ....
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------------------------ka~~ 69 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------------------------KAQQ 69 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------------------------hhhh
Confidence 568899999999 5556669999999999999763 3221 1234
Q ss_pred CCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc----CCEEEEEeCCCeEEEEE
Q 011711 269 GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSMDNTIRVWD 342 (479)
Q Consensus 269 ~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~----~~~l~sgs~dg~I~iwd 342 (479)
.|.++|.+++|+.+ .+++|+.|+.+++||+.+++ ......|..+|.++.|- -..|+|||-|.+|+.||
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC------eeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 58899999999988 99999999999999999985 56678899999999994 34689999999999999
Q ss_pred CCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCC
Q 011711 343 LDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND 422 (479)
Q Consensus 343 ~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 422 (479)
++...++.++.. .+.+.++.....+++.+..+..|.+|+++++................++++. .+.+ ..+.|+-+
T Consensus 144 ~R~~~pv~t~~L-PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f--~d~~-~~alGsiE 219 (347)
T KOG0647|consen 144 TRSSNPVATLQL-PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACF--QDKD-GFALGSIE 219 (347)
T ss_pred cCCCCeeeeeec-cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEE--ecCC-ceEeeeec
Confidence 999999998874 4567787777899999999999999999876433322222222222233333 4444 34778999
Q ss_pred CeEEEeecCCC--ceeeeeec----------cCceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 423 DSVHLYELPSF--MERGRIFS----------RREVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 423 g~v~iwd~~~~--~~~~~~~~----------~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
|.+.|..++.+ +.-..+.. --.|++++|+|.. .|+|.|.||++.+||-+..
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence 99999998876 22233322 1258899999977 9999999999999996543
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.4e-24 Score=203.30 Aligned_cols=253 Identities=19% Similarity=0.289 Sum_probs=206.2
Q ss_pred CCCCcccccCCCCCC---CCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeee
Q 011711 72 NPCRFAHTESQTLPV---SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLE 148 (479)
Q Consensus 72 ~p~~~l~~~~p~~~~---~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (479)
.+|-||......... .-+...|+++.|+++|.+||.|-.+|++.|||..+...... +.
T Consensus 196 g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~-------------------~~ 256 (484)
T KOG0305|consen 196 GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT-------------------LR 256 (484)
T ss_pred cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc-------------------cc
Confidence 345566655554422 22378899999999999999999999999998777554111 11
Q ss_pred e-cCCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceE
Q 011711 149 R-TTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA 227 (479)
Q Consensus 149 ~-~~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~ 227 (479)
. |.....|..|....+.+|+.|+.|..+|+.........+.+|...|..++|++|+.+||+|+.|+.+.|||....+..
T Consensus 257 ~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 257 GSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 2 566789999999999999999999999998875555569999999999999999999999999999999998554444
Q ss_pred EEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEE--eCCCcEEEEEccCCC
Q 011711 228 SVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAG--AQDGNILVWKGIPNT 302 (479)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g--~~dg~i~iwd~~~~~ 302 (479)
. .+..|.+.|.+++|.|- +||+| +.|+.|++||..++.
T Consensus 337 ~-------------------------------------~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 337 F-------------------------------------TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred E-------------------------------------EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 3 34579999999999876 88886 479999999998775
Q ss_pred CCcccceeeecCCCCCeEEEEEc--CCEEEE--EeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCC
Q 011711 303 QNPFQLAALLKGHTRPVTCLAVG--GKRLYS--GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN 376 (479)
Q Consensus 303 ~~~~~~~~~~~~h~~~i~~l~~~--~~~l~s--gs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg 376 (479)
. +.. ..-...|++|.|+ .+.|++ |..++.|.||+..+.+.+..+.+|...|..++.+ +..+++|+.|.
T Consensus 380 ~-----i~~-vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 380 R-----IDS-VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADE 453 (484)
T ss_pred E-----ecc-cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccC
Confidence 3 332 3346789999998 334544 5678899999999999999999999999999988 78999999999
Q ss_pred eEEEEEcCCC
Q 011711 377 TIKVWIMTEE 386 (479)
Q Consensus 377 ~i~iwd~~~~ 386 (479)
++++|++-..
T Consensus 454 Tlrfw~~f~~ 463 (484)
T KOG0305|consen 454 TLRFWNLFDE 463 (484)
T ss_pred cEEeccccCC
Confidence 9999998764
No 104
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=6.2e-24 Score=192.85 Aligned_cols=251 Identities=18% Similarity=0.276 Sum_probs=199.6
Q ss_pred cccccEEEEEeCCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEec
Q 011711 190 GHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLD 268 (479)
Q Consensus 190 ~H~~~V~~l~~s~~~-~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~ 268 (479)
-|.+.|..+.+-|.. ..+++.+..+.|.|||..+......... +-...+.+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------------------------~~~Pdl~L~ 174 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG---------------------------ECRPDLRLK 174 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc---------------------------cCCCceEEE
Confidence 589999999997765 5666778889999999865432221110 001124566
Q ss_pred CCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCC--cccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEE
Q 011711 269 GPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQN--PFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRV 340 (479)
Q Consensus 269 ~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~i 340 (479)
+|...-++++|+.. .+++++.|+.|++||+...... ...+...+.+|...|..++|+ .+.|++++.|+.+.|
T Consensus 175 gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i 254 (422)
T KOG0264|consen 175 GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI 254 (422)
T ss_pred eecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE
Confidence 77777788999876 9999999999999999876541 245667789999999999996 788999999999999
Q ss_pred EECC--CCcEEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCc-ceEEeccccCccceEEEeeeeCCCCCc
Q 011711 341 WDLD--TLEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEG-NLEVAYTHNEDHGVLALGGLNDPDGNP 414 (479)
Q Consensus 341 wd~~--~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (479)
||++ +.++.....+|...+.++.|+ +..||+||.|++|++||+++.. ++..+..|...+..+ .|+|....
T Consensus 255 wD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V----~WSPh~et 330 (422)
T KOG0264|consen 255 WDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQV----EWSPHNET 330 (422)
T ss_pred EEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEE----EeCCCCCc
Confidence 9999 667778889999999999998 5789999999999999998764 455666676665444 45699888
Q ss_pred EEEEEeCCCeEEEeecCCCceeee------------ee---ccCceEEEEECCCc--eEEEEcCCCcEEEEEec
Q 011711 415 VLICSCNDDSVHLYELPSFMERGR------------IF---SRREVRVIETGPDG--LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 415 ~l~s~~~dg~v~iwd~~~~~~~~~------------~~---~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~ 471 (479)
+|++++.|+.+.+||+..-..... +. |...|..+.|+|+. .+++.++|+.+.||+..
T Consensus 331 vLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 331 VLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999999999999999975322221 22 36779999999999 89999999999999987
No 105
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=7.1e-24 Score=199.49 Aligned_cols=277 Identities=21% Similarity=0.240 Sum_probs=203.3
Q ss_pred eeEeCCCCCeEEEeecCCCc-----eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCcee
Q 011711 163 NCVKGDECRFWHSWFCGEGF-----TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG 237 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~-----~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~ 237 (479)
.++.+.+||.|.++|..... ..+.....|.++|.++.|-|....|++++.|.++++||++++++...-
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~------- 138 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR------- 138 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-------
Confidence 56778899999999987431 124567789999999999998889999999999999999988766431
Q ss_pred EEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcc--------
Q 011711 238 SLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPF-------- 306 (479)
Q Consensus 238 ~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~-------- 306 (479)
...+|.+.|.+++|.+. .|++|+.||.|.|||++.+....+
T Consensus 139 ----------------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~ 190 (720)
T KOG0321|consen 139 ----------------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIY 190 (720)
T ss_pred ----------------------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhh
Confidence 23479999999999765 999999999999999876542110
Q ss_pred ----------c----ceeeecCCCCC----eEEEEE-cCCEEEEEeC-CCeEEEEECCCCcEEEE--------EeCC---
Q 011711 307 ----------Q----LAALLKGHTRP----VTCLAV-GGKRLYSGSM-DNTIRVWDLDTLEAVMT--------LNGH--- 355 (479)
Q Consensus 307 ----------~----~~~~~~~h~~~----i~~l~~-~~~~l~sgs~-dg~I~iwd~~~~~~~~~--------~~~h--- 355 (479)
+ -.....++... |+.+.| +...|++++. |+.|++||+++...... +..|
T Consensus 191 ~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skr 270 (720)
T KOG0321|consen 191 GRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKR 270 (720)
T ss_pred ccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccc
Confidence 0 01112233333 555666 4888999887 99999999997554332 2233
Q ss_pred CCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCC
Q 011711 356 TDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSF 433 (479)
Q Consensus 356 ~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 433 (479)
.-.+.++..+ |.+|++.+.|+.|++|++.....-................-..+|++. ++++|+.|...++|.+.+.
T Consensus 271 s~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 271 SVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred eeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc-eEeccCCCcceeeeeecCc
Confidence 2235666666 789888888999999999865432222222222233333334469998 8999999999999999887
Q ss_pred ceeeeee--ccCceEEEEECCCc--eEEEEcCCCcEEEEEeccCCC
Q 011711 434 MERGRIF--SRREVRVIETGPDG--LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 434 ~~~~~~~--~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~~~~ 475 (479)
+....+. |..+|++++|.|.. -++|+++|-.+++|++.++-.
T Consensus 350 e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 350 EAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred cCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 6654443 57789999999966 889999999999999976543
No 106
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=1.7e-21 Score=178.85 Aligned_cols=358 Identities=15% Similarity=0.228 Sum_probs=255.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCceeccCCCCCCc--------cccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCC
Q 011711 82 QTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGT--------THVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK 153 (479)
Q Consensus 82 p~~~~~gh~~~i~~~~~s~~g~~las~~~dg~--------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (479)
...-..||...|.+++.+||-..+|+|-.-|+ +|||+..+... ..++..-...
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T-------------------L~V~g~f~~G 156 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST-------------------LHVIGFFDRG 156 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee-------------------eeeecccccc
Confidence 44456899999999999999999999877775 67775322110 0111111112
Q ss_pred eEEEec--cCC----eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceE
Q 011711 154 NVCYHW--LSG----NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA 227 (479)
Q Consensus 154 ~~c~~~--~~~----~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~ 227 (479)
..|..+ ..+ ..+..+.+..+.|||...+ ......+.-++.|....|+|.+..|+.....+.+..|+.+.+...
T Consensus 157 V~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~-~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~ 235 (626)
T KOG2106|consen 157 VTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKK-AKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLV 235 (626)
T ss_pred ceeeeecccCCCceEEEecCCCccccchhhchhh-hccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceE
Confidence 333332 222 2234566788999999887 556666777888999999997665555555589999999988766
Q ss_pred EEEec---C--CceeEEEe--CCCEEEEEcCCeEEEEEcCCCceE-EecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEc
Q 011711 228 SVINL---G--AEVGSLIC--EGPWVFVGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKG 298 (479)
Q Consensus 228 ~~~~~---~--~~~~~~~~--~~~~l~~~~~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~ 298 (479)
+.... . ..+.++.+ ++..+...++|.|.+|+..+.+.. ....|.+.|.+++...+ .|++|+.|.+|..||-
T Consensus 236 k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~ 315 (626)
T KOG2106|consen 236 KRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDD 315 (626)
T ss_pred EEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccc
Confidence 54432 2 33455554 778888889999999999877653 34489999999999888 8888999999999993
Q ss_pred cCCCCCccc-----------------------------------ceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEE
Q 011711 299 IPNTQNPFQ-----------------------------------LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVW 341 (479)
Q Consensus 299 ~~~~~~~~~-----------------------------------~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iw 341 (479)
.-.+..+.+ ......+|......++.+ .++++|++.|+.+++|
T Consensus 316 ~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW 395 (626)
T KOG2106|consen 316 NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLW 395 (626)
T ss_pred cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEc
Confidence 322111000 012234566666666664 7789999999999999
Q ss_pred ECCCCcEEEEEeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe
Q 011711 342 DLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (479)
Q Consensus 342 d~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 420 (479)
+ ..+++.+.. -..++.++.++ ...++.|...|...+.|.++...+.. ...+++..++.+ +|+|. +||.|+
T Consensus 396 ~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~-~~d~~~ls~v~y----sp~G~-~lAvgs 466 (626)
T KOG2106|consen 396 N--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTI-HTDNEQLSVVRY----SPDGA-FLAVGS 466 (626)
T ss_pred c--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEecccceeEEE-EecCCceEEEEE----cCCCC-EEEEec
Confidence 9 556665554 23456677766 23999999999999999998554443 333667666666 59999 999999
Q ss_pred CCCeEEEeecCCCceeeeee---ccCceEEEEECCCc-eEEEEcCCCcEEEE
Q 011711 421 NDDSVHLYELPSFMERGRIF---SRREVRVIETGPDG-LFFTGDGTGMLSVW 468 (479)
Q Consensus 421 ~dg~v~iwd~~~~~~~~~~~---~~~~v~~l~~s~~g-~l~sg~~dg~v~vw 468 (479)
.|+.|+||.+.......... +..+|+.+.|++|+ +|.+-+.|-.|..|
T Consensus 467 ~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 467 HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 99999999987654333322 25889999999999 99999999999999
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.7e-22 Score=164.67 Aligned_cols=270 Identities=19% Similarity=0.195 Sum_probs=205.7
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEE-ecCCceeEEEeCCCEEEEEcCCeEEEEEcCC
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI-NLGAEVGSLICEGPWVFVGMPNVVKAWHIES 261 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~ 261 (479)
+.+..+. ....|.+++|+|.|.+.+.|+..++.+|-....-..++.- +.....-.+.
T Consensus 24 ~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~--------------------- 81 (350)
T KOG0641|consen 24 EAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVL--------------------- 81 (350)
T ss_pred EEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEE---------------------
Confidence 3444443 4678999999999999999999999998754332111100 0000000000
Q ss_pred CceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc------CCEEEEEe
Q 011711 262 SAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG------GKRLYSGS 333 (479)
Q Consensus 262 ~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~------~~~l~sgs 333 (479)
....+.|.+.|+|.+|++. ++++|+.|.+|++..++.......-....+..|.+.|..++|- +..|++++
T Consensus 82 --~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 82 --CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred --eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence 1233468999999999988 9999999999999887766544344455678899999999992 55677654
Q ss_pred -CCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEecccc--Ccc-ceEEEeeee
Q 011711 334 -MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN--EDH-GVLALGGLN 408 (479)
Q Consensus 334 -~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~-~~~~~~~~~ 408 (479)
.|..|++-|..+++..+.+.+|.+.|.++-.+ +-++++|+.|.+|++||++-+.++..+.... ... .....+...
T Consensus 160 agdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred CCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 57788999999999999999999999998766 7899999999999999999887777665422 221 122233344
Q ss_pred CCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCCCCC
Q 011711 409 DPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKPNAE 477 (479)
Q Consensus 409 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~~~ 477 (479)
+|.|+ +|++|-.|....+||++.++.+..+. |...|+++.|+|.. ++++++.|..|++=|++-....+
T Consensus 240 dpsgr-ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e 309 (350)
T KOG0641|consen 240 DPSGR-LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE 309 (350)
T ss_pred CCCcc-eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhc
Confidence 79998 99999999999999999999998876 57889999999998 99999999999999987654433
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=4.3e-23 Score=185.94 Aligned_cols=274 Identities=20% Similarity=0.264 Sum_probs=211.7
Q ss_pred CCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCC--CeEEEeccCCeeEeCCC
Q 011711 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSGNCVKGDE 169 (479)
Q Consensus 92 ~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~~g~~ 169 (479)
.+.++...+....+.+|+.|.++-+.|....... .++.+|.. ..+-++.....+++++.
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-------------------~~~~Gh~kki~~v~~~~~~~~v~~aSa 281 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-------------------ATLKGHTKKITSVKFHKDLDTVITASA 281 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhh-------------------hhccCcceEEEEEEeccchhheeecCC
Confidence 3466666666678999999999999975544321 12222221 24456777788999999
Q ss_pred CCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEE
Q 011711 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVG 249 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (479)
|..|+||..... ........|+++|+.+..+|.|.||++++.||+....|++++.++......
T Consensus 282 d~~i~vws~~~~-s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---------------- 344 (506)
T KOG0289|consen 282 DEIIRVWSVPLS-SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE---------------- 344 (506)
T ss_pred cceEEeeccccc-cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec----------------
Confidence 999999999887 567778899999999999999999999999999999999999887655421
Q ss_pred cCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--
Q 011711 250 MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-- 325 (479)
Q Consensus 250 ~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-- 325 (479)
...-.+++.+|+|| +|.+|..||.|++||+.+... ...+.+|.++|..++|+
T Consensus 345 -------------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~-----~a~Fpght~~vk~i~FsEN 400 (506)
T KOG0289|consen 345 -------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN-----VAKFPGHTGPVKAISFSEN 400 (506)
T ss_pred -------------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc-----cccCCCCCCceeEEEeccC
Confidence 12345789999999 888899999999999988764 67789999999999996
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCC-CcEEEEEc--CCEEEEEeCCCeEEEEEcCC--CcceEEeccccCccc
Q 011711 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD-APMSLLCW--DQYLLSCSLDNTIKVWIMTE--EGNLEVAYTHNEDHG 400 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~ 400 (479)
|-+|++++.|+.|++||++..+..+++..... .+.++.++ |.+|+.++.|=+|++++-.+ ..++..+..+.+...
T Consensus 401 GY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st 480 (506)
T KOG0289|consen 401 GYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLST 480 (506)
T ss_pred ceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccc
Confidence 78899999999999999999998888875443 57788887 89999998877777766332 233444444444444
Q ss_pred eEEEeeeeCCCCCcEEEEEeCCCeEEEeec
Q 011711 401 VLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 401 ~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 430 (479)
.+.| .... .++++++.|..++++.+
T Consensus 481 ~v~F----g~~a-q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 481 GVRF----GEHA-QYLASTSMDAILRLYAL 505 (506)
T ss_pred eeee----cccc-eEEeeccchhheEEeec
Confidence 4444 2344 48999999999888754
No 109
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=4e-23 Score=177.46 Aligned_cols=296 Identities=24% Similarity=0.304 Sum_probs=214.3
Q ss_pred CCCCCCCCCCCC-CCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeE
Q 011711 87 SNHKKSPPSYNC-PKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCV 165 (479)
Q Consensus 87 ~gh~~~i~~~~~-s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 165 (479)
..|.+.|+++.. .-.|+|+.||+.||.|-|||++......... ...+..|.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~--------------------li~k~~c~-------- 91 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG--------------------LIAKHKCI-------- 91 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc--------------------ceeheeee--------
Confidence 558899999999 7789999999999999999877654311111 00011111
Q ss_pred eCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCC
Q 011711 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (479)
+. ...-.+|+-.|.++.|-| |...+.++|-|.+++|||..+.+....+....
T Consensus 92 ------------v~-----~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~---------- 144 (397)
T KOG4283|consen 92 ------------VA-----KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG---------- 144 (397)
T ss_pred ------------cc-----ccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCc----------
Confidence 00 112347888999999966 66688899999999999999988877776433
Q ss_pred EEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcC-----CEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCe
Q 011711 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-----EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i 319 (479)
.|++-+++| -++++|..|-.|++-|+.++.. ...+.+|.+.|
T Consensus 145 ----------------------------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-----sH~LsGHr~~v 191 (397)
T KOG4283|consen 145 ----------------------------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-----SHTLSGHRDGV 191 (397)
T ss_pred ----------------------------eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-----eeeeccccCce
Confidence 334433333 3899999999999999999864 78899999999
Q ss_pred EEEEEc---CCEEEEEeCCCeEEEEECCCC-cEEEEE--------------eCCCCCcEEEEEc--CCEEEEEeCCCeEE
Q 011711 320 TCLAVG---GKRLYSGSMDNTIRVWDLDTL-EAVMTL--------------NGHTDAPMSLLCW--DQYLLSCSLDNTIK 379 (479)
Q Consensus 320 ~~l~~~---~~~l~sgs~dg~I~iwd~~~~-~~~~~~--------------~~h~~~v~~~~~~--~~~l~s~s~dg~i~ 379 (479)
.++.|+ .-.|++|+.||.|++||++.. .+...+ ..|.+.+..+++. +.++++++.|..++
T Consensus 192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR 271 (397)
T ss_pred EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence 999997 445899999999999999864 333333 3566778888887 78999999999999
Q ss_pred EEEcCCCcceEEeccccCcc--ceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc-e
Q 011711 380 VWIMTEEGNLEVAYTHNEDH--GVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG-L 455 (479)
Q Consensus 380 iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g-~ 455 (479)
+|+..+++.....+...... ....+... +.+.. .++---.++.+.++++-+++.+..+.. ...+.+.++.|+- .
T Consensus 272 ~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~-vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~ 349 (397)
T KOG4283|consen 272 VWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSD-VFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQ 349 (397)
T ss_pred EeecccCcccccccccccccccccceEEEe-ecccc-eEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhh
Confidence 99998876543333211111 11111111 12222 333334568889999888888877764 5678899999988 9
Q ss_pred EEEEcCCCcEEEEEecc
Q 011711 456 FFTGDGTGMLSVWKILA 472 (479)
Q Consensus 456 l~sg~~dg~v~vw~~~~ 472 (479)
..+|+.|+.|..|-...
T Consensus 350 ~~tg~~d~ni~~w~p~l 366 (397)
T KOG4283|consen 350 CFTGDMNGNIYMWSPAL 366 (397)
T ss_pred hhccccCCccccccccc
Confidence 99999999999998743
No 110
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=2.1e-23 Score=189.44 Aligned_cols=243 Identities=20% Similarity=0.311 Sum_probs=190.4
Q ss_pred EEeccCCeeEeCCCCCeEEEeecCCCc---------eeeEEEecccccEEEEEeCCCC-CEEEEEeCCCcEEEEECCCCc
Q 011711 156 CYHWLSGNCVKGDECRFWHSWFCGEGF---------TMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQ 225 (479)
Q Consensus 156 c~~~~~~~~~~g~~d~~i~vw~~~~~~---------~~~~~~~~H~~~V~~l~~s~~~-~~l~s~s~Dg~v~vwd~~~~~ 225 (479)
+.-.....++++...+.+.|||..+-. .+-..+.||++.=++++|++.. -.|++++.|++|++||+....
T Consensus 132 ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~ 211 (422)
T KOG0264|consen 132 YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAES 211 (422)
T ss_pred hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccc
Confidence 333444566678889999999997432 2223789999988899998754 479999999999999997654
Q ss_pred eEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCC
Q 011711 226 SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNT 302 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~ 302 (479)
..... ......+.+|...|..++|++. +|++++.|+.+.|||++++.
T Consensus 212 ~~~~~------------------------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 212 KEDKV------------------------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred cCCcc------------------------------ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 32000 0112346689999999999865 89999999999999999742
Q ss_pred CCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCCCcEEEEEc---CCEEEEEeCC
Q 011711 303 QNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW---DQYLLSCSLD 375 (479)
Q Consensus 303 ~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~v~~~~~~---~~~l~s~s~d 375 (479)
.++.....+|..+|.|++|+ +..||||+.|++|.+||+|+. +++.++.+|...|..+.|+ ...|++++.|
T Consensus 262 ---~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 262 ---SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD 338 (422)
T ss_pred ---CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Confidence 45677789999999999997 788999999999999999984 5789999999999999998 4789999999
Q ss_pred CeEEEEEcCCCcc-----------eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 376 NTIKVWIMTEEGN-----------LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 376 g~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
+.+.+||+..-.. ...++.|.+. ......+.|+|.....|++.+.|+.+.||+...
T Consensus 339 ~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 339 RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CcEEEEeccccccccChhhhccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999975432 2333444333 222344567899999999999999999999863
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.6e-23 Score=186.58 Aligned_cols=254 Identities=23% Similarity=0.372 Sum_probs=197.7
Q ss_pred EeCC-CcEEEEECCCCceEEEEecCCceeEEE---eCCCEEEEE--cCCeEEEEEcCCCceEE-ecCCCccEEEEEEcCC
Q 011711 210 GSRD-GTVQLWDCHTGQSASVINLGAEVGSLI---CEGPWVFVG--MPNVVKAWHIESSAEFS-LDGPVGEVYSMVVANE 282 (479)
Q Consensus 210 ~s~D-g~v~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~--~~~~i~v~~~~~~~~~~-~~~~~~~v~~~~~~~~ 282 (479)
++.| .++.+||+.+|.....+........-. -.+.+++++ ....+.+|.+....... ..-..+.|.+++-+|.
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL 92 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCC
Confidence 3444 459999999999998888663322211 245566655 45689999998776654 3345677999999888
Q ss_pred --EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECC---------CCcEE
Q 011711 283 --MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD---------TLEAV 349 (479)
Q Consensus 283 --~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~---------~~~~~ 349 (479)
+++.|+..|.|++|.+.++. ++..+.+|..+|+|+.|+ +.+|+||+.||.|.+|++- +-+++
T Consensus 93 G~~l~ag~i~g~lYlWelssG~-----LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGI-----LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ceEEEeecccCcEEEEEecccc-----HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 66666699999999999986 467779999999999996 8999999999999999863 35678
Q ss_pred EEEeCCCCCcEEEEEc----CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeE
Q 011711 350 MTLNGHTDAPMSLLCW----DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSV 425 (479)
Q Consensus 350 ~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v 425 (479)
+.+..|.-+|+++... ..+++++|.|.++++||+..+..+..+. ....+.++++ +|.+. .+.+|+.+|.|
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~l----Dpae~-~~yiGt~~G~I 241 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVAL----DPAER-VVYIGTEEGKI 241 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEE----ccccc-EEEecCCcceE
Confidence 9999999999999987 3699999999999999998876554443 3344455555 57776 88889999999
Q ss_pred EEeecCCCc----------------eeeeee-cc--CceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 426 HLYELPSFM----------------ERGRIF-SR--REVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 426 ~iwd~~~~~----------------~~~~~~-~~--~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
.+.++.... .+..+. |. .+|+|++++-|| +|++|+.||.|.|||+.+.+
T Consensus 242 ~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 242 FQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred EeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 998875433 111111 33 489999999999 99999999999999998754
No 112
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-22 Score=171.53 Aligned_cols=226 Identities=19% Similarity=0.297 Sum_probs=189.9
Q ss_pred EEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEE
Q 011711 187 KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFS 266 (479)
Q Consensus 187 ~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~ 266 (479)
.++||+.+++.|.++.+|.+|.|++.|.++.||-..+|+.+.++.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~----------------------------------- 49 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD----------------------------------- 49 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-----------------------------------
Confidence 478999999999999999999999999999999988888877664
Q ss_pred ecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeC-----CCe
Q 011711 267 LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM-----DNT 337 (479)
Q Consensus 267 ~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~-----dg~ 337 (479)
+|.+.|+++..+.+ .+++|+.|.++++||+.++++ +..++ ...+|..+.|+ +++++.... .+.
T Consensus 50 --GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~-----la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~ 121 (327)
T KOG0643|consen 50 --GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ-----LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCF 121 (327)
T ss_pred --CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE-----EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceE
Confidence 79999999998866 999999999999999999864 33333 46788888887 666555543 357
Q ss_pred EEEEECC-------CCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcce-EEeccccCccceEEEeee
Q 011711 338 IRVWDLD-------TLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNL-EVAYTHNEDHGVLALGGL 407 (479)
Q Consensus 338 I~iwd~~-------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~ 407 (479)
|.++|++ +.++...+..+.+.++...|. +++|++|..||.|.+||++++..+ .....|...++.+.+
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~--- 198 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF--- 198 (327)
T ss_pred EEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccc---
Confidence 9999998 466788888888888888887 899999999999999999997544 333556666666666
Q ss_pred eCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEc
Q 011711 408 NDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGD 460 (479)
Q Consensus 408 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~ 460 (479)
+++.. ++++++.|.+-++||..+.+.+.++....+|++.+++|.. .++.|+
T Consensus 199 -s~d~T-~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 199 -SRDRT-YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGG 250 (327)
T ss_pred -cCCcc-eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecC
Confidence 48887 8999999999999999999999999999999999999976 444443
No 113
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=1.4e-21 Score=179.33 Aligned_cols=315 Identities=17% Similarity=0.259 Sum_probs=232.3
Q ss_pred eeeeecCCCeEEEeccCC--eeEeCCCCC--------eEEEeecCCCceeeEEEecccccEEEEEeCC--CCCEEEEE--
Q 011711 145 RTLERTTPKNVCYHWLSG--NCVKGDECR--------FWHSWFCGEGFTMLAKLEGHKKAVSGIALPL--RSDKLYSG-- 210 (479)
Q Consensus 145 ~~~~~~~~~~~c~~~~~~--~~~~g~~d~--------~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~--~~~~l~s~-- 210 (479)
+...+|..+..|+.-..+ .+++|-..+ .+++||..+- ..+..+..-...|++++|++ .|.+|...
T Consensus 98 r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L-~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~ 176 (626)
T KOG2106|consen 98 RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTL-STLHVIGFFDRGVTCVAFSKINGGSLLCAVDD 176 (626)
T ss_pred ccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccc-eeeeeeccccccceeeeecccCCCceEEEecC
Confidence 344566667777665554 455554444 5999998665 66777777788999999976 35555554
Q ss_pred eCCCcEEEEECCCCceEEEEecCCceeEEE---e-CCCEEEEEcCCeEEEEEcCCCceEEec-----CCCccEEEEEEcC
Q 011711 211 SRDGTVQLWDCHTGQSASVINLGAEVGSLI---C-EGPWVFVGMPNVVKAWHIESSAEFSLD-----GPVGEVYSMVVAN 281 (479)
Q Consensus 211 s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~---~-~~~~l~~~~~~~i~v~~~~~~~~~~~~-----~~~~~v~~~~~~~ 281 (479)
+.+..+.|||.+.+..........++.... + +.+++++...+.+.+|+.+++...... .....|.|++|.+
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e 256 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE 256 (626)
T ss_pred CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcC
Confidence 456789999999988877777655544333 3 677888889999999999998765322 2336799999998
Q ss_pred C-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEE----------
Q 011711 282 E-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAV---------- 349 (479)
Q Consensus 282 ~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~---------- 349 (479)
+ .+++|..+|.|.||+..+.. ..+....|.+.|.+++.- ...|++|+.|..|..||-. .+.+
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~~-----~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTNR-----ISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPEQFG 330 (626)
T ss_pred CCCEEeecCCceEEEEeCCCce-----EEeEeeecCCceEEEEEecCccEeecCccceEEecccc-ccccccccCchhcC
Confidence 8 99999999999999986654 344445999999999985 5667779999999999832 1111
Q ss_pred -------------------------------EEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEecccc
Q 011711 350 -------------------------------MTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN 396 (479)
Q Consensus 350 -------------------------------~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 396 (479)
....+|......++.. .+.+++++.|+.+++|+ ..+. .-.....
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~-~wt~~~~ 407 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL-EWTKIIE 407 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce-eEEEEec
Confidence 1123455555555554 57899999999999998 2222 2222233
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCCC
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~ 475 (479)
.+..+. .++|.| .++.|...|...+.|.++...+..-....+++++.|+|+| .|+.|+.|+.|+||.++....
T Consensus 408 d~~~~~----~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 408 DPAECA----DFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred CceeEe----eccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 333333 346888 7899999999999999996666555558899999999999 999999999999999987654
No 114
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=1.1e-22 Score=193.17 Aligned_cols=354 Identities=19% Similarity=0.196 Sum_probs=251.8
Q ss_pred CCCCCCCCCCCCCCCCCc---eeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccC
Q 011711 85 PVSNHKKSPPSYNCPKNN---VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g---~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 161 (479)
.++||.+.|.+++|...| .+|||+|.|..||||++.-..-............ ....
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~---------------------~~~~ 244 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTT---------------------LSNL 244 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccc---------------------ccCC
Confidence 579999999999996555 4999999999999997665432110110000000 0001
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc--eEEEEecCCce---
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ--SASVINLGAEV--- 236 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~--~~~~~~~~~~~--- 236 (479)
...... ..+. |.+ ..-..+.||++.|.++.|+|.+..|+++|.|.++.+|...+.. -+.....+...
T Consensus 245 ~~f~~l---~~i~-~~i----s~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a 316 (764)
T KOG1063|consen 245 PVFMIL---EEIQ-YRI----SFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSA 316 (764)
T ss_pred ceeeee---eeEE-EEE----ehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccc
Confidence 111111 1111 111 2224467999999999999999999999999999999887653 33333332211
Q ss_pred ----eEE-EeCCCEEE-EEcCCeEEEEEcCCCce----EEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCC
Q 011711 237 ----GSL-ICEGPWVF-VGMPNVVKAWHIESSAE----FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQN 304 (479)
Q Consensus 237 ----~~~-~~~~~~l~-~~~~~~i~v~~~~~~~~----~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~ 304 (479)
.++ .+++..++ -+..|..++|..+.... ....+|...|.+++|+|. +|++.+.|.+-++|-.-..+.
T Consensus 317 ~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~- 395 (764)
T KOG1063|consen 317 GGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ- 395 (764)
T ss_pred cceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccccc-
Confidence 122 23444444 46889999999444332 346689999999999966 999999999999987653322
Q ss_pred cccceeeecCCCCCeEEEEE-c-CCEEEEEeCCCeEEEEECCC-------------------------------------
Q 011711 305 PFQLAALLKGHTRPVTCLAV-G-GKRLYSGSMDNTIRVWDLDT------------------------------------- 345 (479)
Q Consensus 305 ~~~~~~~~~~h~~~i~~l~~-~-~~~l~sgs~dg~I~iwd~~~------------------------------------- 345 (479)
.+..+...+-|...++|+++ + ...+++|..+..+|+|+...
T Consensus 396 ~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~ 475 (764)
T KOG1063|consen 396 EWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFF 475 (764)
T ss_pred ceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCc
Confidence 25556667788899999998 4 56788888899999998620
Q ss_pred ------CcE---------------------------------EEEEeCCCCCcEEEEEc--CCEEEEEeCCC-----eEE
Q 011711 346 ------LEA---------------------------------VMTLNGHTDAPMSLLCW--DQYLLSCSLDN-----TIK 379 (479)
Q Consensus 346 ------~~~---------------------------------~~~~~~h~~~v~~~~~~--~~~l~s~s~dg-----~i~ 379 (479)
|.. ++++-+|.-.|.+++.+ ++++++++... .|+
T Consensus 476 ~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~ 555 (764)
T KOG1063|consen 476 PGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIR 555 (764)
T ss_pred ccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEE
Confidence 000 12233677889999888 78999988753 599
Q ss_pred EEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceee-----eeeccCceEEEEECCCc
Q 011711 380 VWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERG-----RIFSRREVRVIETGPDG 454 (479)
Q Consensus 380 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-----~~~~~~~v~~l~~s~~g 454 (479)
+|+..+....+.+..|.-.+..+.+ +|||+ +|++.+.|.++.+|......... .-.|..-|.+..|+|++
T Consensus 556 lw~t~~W~~~~~L~~HsLTVT~l~F----Spdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 556 LWNTANWLQVQELEGHSLTVTRLAF----SPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred EEeccchhhhheecccceEEEEEEE----CCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc
Confidence 9999988888888888888777777 59999 88889999999999875432211 12356779999999999
Q ss_pred -eEEEEcCCCcEEEEEeccC
Q 011711 455 -LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 455 -~l~sg~~dg~v~vw~~~~~ 473 (479)
+|+|++.|.+|++|...+.
T Consensus 631 ~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 631 KYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ceeEEecCCceEEEEeccCc
Confidence 8999999999999999876
No 115
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=175.42 Aligned_cols=276 Identities=16% Similarity=0.222 Sum_probs=189.4
Q ss_pred eEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCce-----E-EEEecCCc-eeEEEeCCCEEE--EEcCCeEE
Q 011711 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS-----A-SVINLGAE-VGSLICEGPWVF--VGMPNVVK 255 (479)
Q Consensus 185 ~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~-----~-~~~~~~~~-~~~~~~~~~~l~--~~~~~~i~ 255 (479)
+..|++|.+.|++++|+.||++|+|++.|++|++|++..-.. + ..++.+.+ ...+.++-.-++ +...+.++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 456899999999999999999999999999999999976431 1 12222222 222334444333 33677899
Q ss_pred EEEcCCCceE-------------EecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeE
Q 011711 256 AWHIESSAEF-------------SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (479)
Q Consensus 256 v~~~~~~~~~-------------~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~ 320 (479)
+|.+...+.- -...|...+..+-..++ +|++++.|..|.+|++.. + .+..+......-+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q-----~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-Q-----LLQSIDTNQSSNY 232 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-c-----eeeeecccccccc
Confidence 9987654421 11234555666666555 999999999999999983 2 2444444333333
Q ss_pred E--EEEcCCEEEEEeCCCeEEEEECC---C-----CcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCC--
Q 011711 321 C--LAVGGKRLYSGSMDNTIRVWDLD---T-----LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE-- 386 (479)
Q Consensus 321 ~--l~~~~~~l~sgs~dg~I~iwd~~---~-----~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~-- 386 (479)
. +..+|.++++++..--|++|.+- . -..+.++++|...|..++|+ ...+++.+.||++++||.+-.
T Consensus 233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 3 44459999999999999999863 2 23467889999999999998 578999999999999997532
Q ss_pred --cceEEecc---ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee--ccCceEEEEECCCc-eEEE
Q 011711 387 --GNLEVAYT---HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF--SRREVRVIETGPDG-LFFT 458 (479)
Q Consensus 387 --~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~l~~s~~g-~l~s 458 (479)
+....+.. .......-.+.+..+|+|+ .|+.+ ....+++|..++++....+. |...|.+++|+++| +++|
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee
Confidence 11111111 1111111112333469998 55544 46679999999988777665 58899999999999 6666
Q ss_pred EcCCCcEEEEE
Q 011711 459 GDGTGMLSVWK 469 (479)
Q Consensus 459 g~~dg~v~vw~ 469 (479)
++ |..+++..
T Consensus 391 cG-dr~vrv~~ 400 (420)
T KOG2096|consen 391 CG-DRYVRVIR 400 (420)
T ss_pred ec-ceeeeeec
Confidence 65 67788776
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.6e-23 Score=172.61 Aligned_cols=248 Identities=19% Similarity=0.250 Sum_probs=194.1
Q ss_pred EEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEE
Q 011711 187 KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFS 266 (479)
Q Consensus 187 ~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~ 266 (479)
.-.+|++.|.++...--|++|||++.|++|+|+.++.+..... +.+
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~l----------------------------------l~~ 51 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKL----------------------------------LAE 51 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCcee----------------------------------eeE
Confidence 3457999999999888899999999999999999987654221 246
Q ss_pred ecCCCccEEEEEEcC-C---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc----CCEEEEEeCCCeE
Q 011711 267 LDGPVGEVYSMVVAN-E---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSMDNTI 338 (479)
Q Consensus 267 ~~~~~~~v~~~~~~~-~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~----~~~l~sgs~dg~I 338 (479)
+.+|.++|..++|.. . +|++++.||+|.||.-..+. +........|...|++++|- |-.|++++.||.|
T Consensus 52 L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~---w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v 128 (299)
T KOG1332|consen 52 LTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR---WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV 128 (299)
T ss_pred ecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc---hhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence 779999999999964 3 99999999999999977763 56677788999999999994 7789999999999
Q ss_pred EEEECCCC---cEEEEEeCCCCCcEEEEEc-----C-----------CEEEEEeCCCeEEEEEcCCCc--ceEEeccccC
Q 011711 339 RVWDLDTL---EAVMTLNGHTDAPMSLLCW-----D-----------QYLLSCSLDNTIKVWIMTEEG--NLEVAYTHNE 397 (479)
Q Consensus 339 ~iwd~~~~---~~~~~~~~h~~~v~~~~~~-----~-----------~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~ 397 (479)
.+.+.++. ...+....|...|.++++. | +.|++|+.|+.|+||+..+.. .-..+..|..
T Consensus 129 svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d 208 (299)
T KOG1332|consen 129 SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD 208 (299)
T ss_pred EEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch
Confidence 99998764 2234456888889888876 1 469999999999999998753 1223556766
Q ss_pred ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceee--eeec--cCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 398 DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERG--RIFS--RREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~--~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
-+.-++.+.... -.+..|+++++||+|.||..+...... ++.+ ...+..+.||..| .|+.++.|..|.+|.-+.
T Consensus 209 wVRDVAwaP~~g-l~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 209 WVRDVAWAPSVG-LPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred hhhhhhhccccC-CCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 666666653221 124489999999999999876322222 2222 5679999999999 999999999999998544
No 117
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.3e-21 Score=184.05 Aligned_cols=362 Identities=15% Similarity=0.166 Sum_probs=244.8
Q ss_pred CCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCC
Q 011711 90 KKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDE 169 (479)
Q Consensus 90 ~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~ 169 (479)
...|-+++|++.|+ |.|.+.+|+|.-||+.+..+ ...++...+ ..-.+|.++....++.|++
T Consensus 69 drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~----~~~~d~~gg-------------~IWsiai~p~~~~l~Igcd 130 (691)
T KOG2048|consen 69 DRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQ----KYNIDSNGG-------------AIWSIAINPENTILAIGCD 130 (691)
T ss_pred CCceeeEEEccCCe-EEeecCCceEEEEecccCce----eEEecCCCc-------------ceeEEEeCCccceEEeecC
Confidence 44678899995555 66666699999999887654 122222222 2257888889999999999
Q ss_pred CCeEEEeecCCCc-eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec-----CC--c--eeEE
Q 011711 170 CRFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL-----GA--E--VGSL 239 (479)
Q Consensus 170 d~~i~vw~~~~~~-~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~-----~~--~--~~~~ 239 (479)
||.+...+...+. +..+.|.-.++.|.+++|+|++..|++|+.||.|++||..++..+..... .. + +.++
T Consensus 131 dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv 210 (691)
T KOG2048|consen 131 DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSV 210 (691)
T ss_pred CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEE
Confidence 9988888887662 22334555679999999999999999999999999999999988873332 22 1 2233
Q ss_pred Ee--CCCEEEEEcCCeEEEEEcCCCceE-EecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecC
Q 011711 240 IC--EGPWVFVGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (479)
Q Consensus 240 ~~--~~~~l~~~~~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 314 (479)
.+ ++.++.+...|.|++||...+... ....|.+.|.+++..++ .+++++.|+.|..|...++... +........
T Consensus 211 ~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-wv~~~~r~~ 289 (691)
T KOG2048|consen 211 LFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-WVINSRRDL 289 (691)
T ss_pred EEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-eeeeccccC
Confidence 32 566666668899999999999875 46689999999999876 9999999999999998776542 444555678
Q ss_pred CCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEeCC----------------
Q 011711 315 HTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLE-----------------------AVMTLNGH---------------- 355 (479)
Q Consensus 315 h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~-----------------------~~~~~~~h---------------- 355 (479)
|...|.+++.-+..+++|+.|..+.+-..+..+ ++.....|
T Consensus 290 h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~ 369 (691)
T KOG2048|consen 290 HAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEY 369 (691)
T ss_pred CcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCccccccc
Confidence 889999999988899999999888776543210 00001111
Q ss_pred ------------CCCcEE--EEEcCCEEEEEeC-----------------------------------------------
Q 011711 356 ------------TDAPMS--LLCWDQYLLSCSL----------------------------------------------- 374 (479)
Q Consensus 356 ------------~~~v~~--~~~~~~~l~s~s~----------------------------------------------- 374 (479)
...|.+ ++++|+.|+.+.-
T Consensus 370 ~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~ 449 (691)
T KOG2048|consen 370 NYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKN 449 (691)
T ss_pred ChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecc
Confidence 111222 2222555554441
Q ss_pred CCeEEEEEcCCCcceEEeccc-cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee-eccCceEEEEECC
Q 011711 375 DNTIKVWIMTEEGNLEVAYTH-NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI-FSRREVRVIETGP 452 (479)
Q Consensus 375 dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~l~~s~ 452 (479)
+..+.++++++....+..... ...... ...+..+|+|+ ++++.+.+|.|.+|++++.+..... .....++.++++|
T Consensus 450 ~~~le~~el~~ps~kel~~~~~~~~~~~-I~~l~~SsdG~-yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~ 527 (691)
T KOG2048|consen 450 IFSLEEFELETPSFKELKSIQSQAKCPS-ISRLVVSSDGN-YIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSP 527 (691)
T ss_pred cceeEEEEecCcchhhhhccccccCCCc-ceeEEEcCCCC-EEEEEeccceEEEEEcccceeecchhccCcceeeeeccc
Confidence 111222222111110000000 001111 11223469999 7777779999999999987765544 2368899999997
Q ss_pred Cc--eEEEEcCCCcEEEEEecc
Q 011711 453 DG--LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 453 ~g--~l~sg~~dg~v~vw~~~~ 472 (479)
.. .|+....|+.|.-||++.
T Consensus 528 ~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 528 FVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred cccCcEEEEecCCeEEEEecch
Confidence 65 899999999999999944
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.2e-22 Score=183.13 Aligned_cols=282 Identities=20% Similarity=0.323 Sum_probs=217.1
Q ss_pred eEeCCCCC-eEEEeecCCCceeeEEEecc-cccEEEEEeCCCCCEEEEEeC-CCcEEEEECCCCceEE-EEecCCceeEE
Q 011711 164 CVKGDECR-FWHSWFCGEGFTMLAKLEGH-KKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTGQSAS-VINLGAEVGSL 239 (479)
Q Consensus 164 ~~~g~~d~-~i~vw~~~~~~~~~~~~~~H-~~~V~~l~~s~~~~~l~s~s~-Dg~v~vwd~~~~~~~~-~~~~~~~~~~~ 239 (479)
|.+++.|. .+.+||+.++ ..+.++++- ...-.++.. -.+.+++++.. -..|.+|.+....... .+-.+.++.++
T Consensus 10 ~sssS~d~~~~~~~dl~TG-t~~~~ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al 87 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTG-TSLLQYKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL 87 (476)
T ss_pred EeccCCCCcceeEEecCCC-ceeEEecCcccccchhhhh-hchhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence 33444444 5999999999 556666664 222222222 12466776654 4579999997766554 45566777777
Q ss_pred Ee--CCCEEEEE-cCCeEEEEEcCCCceEE-ecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCC----CCCcccce
Q 011711 240 IC--EGPWVFVG-MPNVVKAWHIESSAEFS-LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPN----TQNPFQLA 309 (479)
Q Consensus 240 ~~--~~~~l~~~-~~~~i~v~~~~~~~~~~-~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~----~~~~~~~~ 309 (479)
.. .|.++++| ..+.|++|.+.++..+. +..|...|+++.|+.| +|++|+.||.|.+|++..- .....++.
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 64 78899988 89999999999999864 5789999999999988 9999999999999987431 11124677
Q ss_pred eeecCCCCCeEEEEEc----CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEc
Q 011711 310 ALLKGHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 310 ~~~~~h~~~i~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (479)
..+..|.-+|+.+... ..+++|+|.|.++++||+..+.++.++.- ...+.+++.+ +..++.|+.+|.|.+.++
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeeh
Confidence 8899999999999996 46899999999999999999999988873 4557777777 789999999999999877
Q ss_pred CCCc----------------ceEEeccccC--ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCc
Q 011711 384 TEEG----------------NLEVAYTHNE--DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRRE 444 (479)
Q Consensus 384 ~~~~----------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~ 444 (479)
.... ....+.+|.. .+++++++ -||. +|++|+.||.|+|||+.+.+.+.++. ..++
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais----~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgp 321 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS----TDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGP 321 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEe----cCcc-EEEeeCCCCCEEEEecchHHHHHHHhhhccc
Confidence 5432 2334455555 56666664 7888 99999999999999999999999998 5899
Q ss_pred eEEEEECCC
Q 011711 445 VRVIETGPD 453 (479)
Q Consensus 445 v~~l~~s~~ 453 (479)
|+.+.+.|-
T Consensus 322 VtnL~i~~~ 330 (476)
T KOG0646|consen 322 VTNLQINPL 330 (476)
T ss_pred cceeEeecc
Confidence 999999653
No 119
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.8e-22 Score=191.79 Aligned_cols=373 Identities=18% Similarity=0.195 Sum_probs=255.4
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCC--CeEEEeccCCe
Q 011711 86 VSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSGN 163 (479)
Q Consensus 86 ~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~ 163 (479)
+.||.+-|.++.|+|.+..|.|+|.|.+..+|...+...-+-..-. -|-. .+... -..-+.++.+.
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR----lGe~--------gg~a~GF~g~lw~~n~~~ 330 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR----LGEV--------GGSAGGFWGGLWSPNSNV 330 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE----eecc--------cccccceeeEEEcCCCCE
Confidence 3699999999999999999999999999999954332110000000 0000 00010 12234444556
Q ss_pred eEeCCCCCeEEEeecCCC--ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCce-EEEE----ecCCce
Q 011711 164 CVKGDECRFWHSWFCGEG--FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS-ASVI----NLGAEV 236 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~--~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~-~~~~----~~~~~~ 236 (479)
+++-+.-|-.++|..++. ..+.....||.+.|++++|+|.|.+|+|+|.|.+-|++-.-..+. -+++ .++...
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl 410 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL 410 (764)
T ss_pred EEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccc
Confidence 788889999999994332 345566789999999999999999999999999999987551111 1222 134455
Q ss_pred eEEEeCC-C--EEEEEcCCeEEEEEcCCCceEE-------------ecCCCccEEEEEEcCCEEEE-EeCCCcE---EEE
Q 011711 237 GSLICEG-P--WVFVGMPNVVKAWHIESSAEFS-------------LDGPVGEVYSMVVANEMLFA-GAQDGNI---LVW 296 (479)
Q Consensus 237 ~~~~~~~-~--~l~~~~~~~i~v~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~l~~-g~~dg~i---~iw 296 (479)
.++.+-+ + ++..+....+|+|+....-... .......|..+-.+++-++- -..+|.. ..=
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 5666522 3 3333466788999876543211 11112334444444442221 1112221 111
Q ss_pred EccCCC-----C----------CcccceeeecCCCCCeEEEEEc--CCEEEEEeCC-----CeEEEEECCCCcEEEEEeC
Q 011711 297 KGIPNT-----Q----------NPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD-----NTIRVWDLDTLEAVMTLNG 354 (479)
Q Consensus 297 d~~~~~-----~----------~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~ 354 (479)
...... . ..+.....+.+|...|++++.+ ++++++++.. ..|++|+..+...++.+.+
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~ 570 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG 570 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence 110000 0 0122345678999999999998 8999998754 4699999999999999999
Q ss_pred CCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 355 HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 355 h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
|+-.|+.+.|+ +++|++.+.|.++.+|..........-+.....+..+.+.+.|+|++. ++++++.|.+|++|..+.
T Consensus 571 HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPD 649 (764)
T ss_pred cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccC
Confidence 99999999998 899999999999999988655444444445667788899999999998 699999999999999887
Q ss_pred C--ceeee---eeccCceEEEEECCC-----c-eEEEEcCCCcEEEEEec
Q 011711 433 F--MERGR---IFSRREVRVIETGPD-----G-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 433 ~--~~~~~---~~~~~~v~~l~~s~~-----g-~l~sg~~dg~v~vw~~~ 471 (479)
. +.+.. +....+|+.+++.|- + .++.|-+.|.|.+|+..
T Consensus 650 ~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 650 LRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred chhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 7 43333 345888999999872 2 67889999999999976
No 120
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.2e-22 Score=171.74 Aligned_cols=242 Identities=17% Similarity=0.225 Sum_probs=195.3
Q ss_pred EEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceE
Q 011711 186 AKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEF 265 (479)
Q Consensus 186 ~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~ 265 (479)
+.+++|...|.+++|+.+|..|++|+.|+++++|+++..+.... .
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-----------------------------------~ 58 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-----------------------------------L 58 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-----------------------------------h
Confidence 56789999999999999999999999999999999987643322 2
Q ss_pred EecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEE--cCCEEEEEeCCCeEEE
Q 011711 266 SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIRV 340 (479)
Q Consensus 266 ~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~--~~~~l~sgs~dg~I~i 340 (479)
...+|.+.|-.++|++. .+++++.|.+|++||++..+. ........+.|. +.| +|++++.++.|..|.+
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~-----~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~ 132 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC-----TARIETKGENIN-ITWSPDGEYIAVGNKDDRITF 132 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE-----EEEeeccCcceE-EEEcCCCCEEEEecCcccEEE
Confidence 34568888888888754 999999999999999998753 444444444444 444 3999999999999999
Q ss_pred EECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEE
Q 011711 341 WDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLIC 418 (479)
Q Consensus 341 wd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 418 (479)
.|.++.+.+...+- .-.+..+.++ +++++....-|.|.|.....-++++.+..|.... ++..++|+|+ ++++
T Consensus 133 id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC----icI~f~p~Gr-yfA~ 206 (313)
T KOG1407|consen 133 IDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC----ICIEFDPDGR-YFAT 206 (313)
T ss_pred EEecccceeehhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce----EEEEECCCCc-eEee
Confidence 99999887766653 2335556665 6777777778999999999888888888887543 4444579999 9999
Q ss_pred EeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 419 SCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 419 ~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
|+.|..+.+||++..-+...+.. .-+|+.++|+.|| +|+++++|-.|-|=+++++.
T Consensus 207 GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 207 GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred ccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence 99999999999998888777764 7889999999999 99999999888776666543
No 121
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=4.2e-22 Score=172.49 Aligned_cols=257 Identities=14% Similarity=0.173 Sum_probs=203.6
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
..+-+.+..+.++.++-||.+++|++... .+...+ .|..++.+++|.+ ...+++|+.||.|+.+|+.+++....-.+
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth 93 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTH 93 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEeccch-hhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceeeccC
Confidence 45666677788889999999999999877 444555 4899999999975 56799999999999999999998888888
Q ss_pred CCceeEEEe---CCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccce
Q 011711 233 GAEVGSLIC---EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLA 309 (479)
Q Consensus 233 ~~~~~~~~~---~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 309 (479)
...+.++.. .+.+++++.|++|++||.+.............|+++....+.|++|+.|..|.+||+++..... .
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~---q 170 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF---Q 170 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchh---h
Confidence 888888775 6778888999999999999755554445556999999999999999999999999998865421 1
Q ss_pred eeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCC----cEEEEEeCCCC---------CcEEEEEc--CCEEEEE
Q 011711 310 ALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL----EAVMTLNGHTD---------APMSLLCW--DQYLLSC 372 (479)
Q Consensus 310 ~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~---------~v~~~~~~--~~~l~s~ 372 (479)
..-..-+-.+.|++.- +.-+++++-||.|.+=.++.. +....|+.|.. +|.+++|+ .+.|+||
T Consensus 171 ~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTg 250 (323)
T KOG1036|consen 171 RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATG 250 (323)
T ss_pred hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEec
Confidence 1122334467777774 667888999999988777665 34456666643 47888888 4789999
Q ss_pred eCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe
Q 011711 373 SLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (479)
Q Consensus 373 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 420 (479)
+.||.|.+||+.+.+.+..+......+..+++ +.+|. .||.++
T Consensus 251 GsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsf----s~dG~-~LAia~ 293 (323)
T KOG1036|consen 251 GSDGIVNIWDLFNRKRLKQLAKYETSISSLSF----SMDGS-LLAIAS 293 (323)
T ss_pred CCCceEEEccCcchhhhhhccCCCCceEEEEe----ccCCC-eEEEEe
Confidence 99999999999998888777777665666666 48888 677764
No 122
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.3e-22 Score=173.39 Aligned_cols=281 Identities=15% Similarity=0.175 Sum_probs=196.3
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
.++-|...+..++.|..+|.|.|||..+. ..-+.+.+|..+|++++||+||++|+|+|.|..|++||+..|.+++.+..
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTF-RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEcccc-chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 34456667789999999999999999887 67888999999999999999999999999999999999999999998887
Q ss_pred CCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccce
Q 011711 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLA 309 (479)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~ 309 (479)
..++.... |+|. ..++.-.+..-.+-++...... . +.
T Consensus 106 ~spv~~~q--------------------------------------~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~-Lp 145 (405)
T KOG1273|consen 106 DSPVWGAQ--------------------------------------WHPRKRNKCVATIMEESPVVIDFSDPKHS-V-LP 145 (405)
T ss_pred cCccceee--------------------------------------eccccCCeEEEEEecCCcEEEEecCCcee-e-cc
Confidence 66654433 2222 1111111212222222211100 0 00
Q ss_pred eeecCCCC-CeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCC-CCcEEEEEc--CCEEEEEeCCCeEEEEEc
Q 011711 310 ALLKGHTR-PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT-DAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 310 ~~~~~h~~-~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (479)
..-.+... .-.+..|+ |+++++|...|.+.++|..+.+++..++... ..|..+.+. +++|+.-+.|..||.|++
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 00000000 11112454 9999999999999999999999999888666 667777766 899999999999999998
Q ss_pred CCCc------ceEEeccccCccceEEE-eeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec--cCceEEEEECCCc
Q 011711 384 TEEG------NLEVAYTHNEDHGVLAL-GGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS--RREVRVIETGPDG 454 (479)
Q Consensus 384 ~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~l~~s~~g 454 (479)
+.-. .+........-++...+ .+.++.+|.+++++......++||....|.++..+.+ ......+.|+|-.
T Consensus 226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~r 305 (405)
T KOG1273|consen 226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVR 305 (405)
T ss_pred hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccce
Confidence 6321 11111111222222222 2334679996666666677899999999999887776 3578899999998
Q ss_pred -eEEEEcCCCcEEEEEeccCCC
Q 011711 455 -LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 455 -~l~sg~~dg~v~vw~~~~~~~ 475 (479)
.+++- ..|.|++|.....++
T Consensus 306 p~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 306 PIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred eeeeec-cCCceEEEEeecccc
Confidence 55555 899999999877654
No 123
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=7.7e-23 Score=176.84 Aligned_cols=261 Identities=16% Similarity=0.229 Sum_probs=190.5
Q ss_pred eEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc---eEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCC
Q 011711 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ---SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIES 261 (479)
Q Consensus 185 ~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~ 261 (479)
...+..|++++.+-+|++||.+++|||.|.+|+|.|++..- ....+..+.. +...
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~----------------------qa~h 162 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT----------------------QARH 162 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc----------------------ccCC
Confidence 34567899999999999999999999999999999987321 1111110000 0000
Q ss_pred CceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCe
Q 011711 262 SAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNT 337 (479)
Q Consensus 262 ~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~ 337 (479)
....++..|..+|+++.|+|. .|++|+.|++|++||+..... +..........+|.++.|+ |.++++|....+
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa---KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~ 239 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA---KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPT 239 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHH---HHHHHHhhccceeeeEeecCCCceEEEecCCCc
Confidence 112356679999999999998 999999999999999876432 1122222345689999997 999999999999
Q ss_pred EEEEECCCCcEEEEE---eCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCC
Q 011711 338 IRVWDLDTLEAVMTL---NGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDG 412 (479)
Q Consensus 338 I~iwd~~~~~~~~~~---~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (479)
+++||+.+.++...- ..|.+.|.++.++ +++.++++.||.|++||--+++++..+....+. .-..+..+..+|
T Consensus 240 ~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g--sevcSa~Ftkn~ 317 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG--SEVCSAVFTKNG 317 (430)
T ss_pred eeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC--ceeeeEEEccCC
Confidence 999999999887654 3688899999998 789999999999999998888887766543332 223445567888
Q ss_pred CcEEEEEeCCCeEEEeecCCCceeeeeecc------CceEEEEECCCc-eEEEE-cCCCcEEEEEeccC
Q 011711 413 NPVLICSCNDDSVHLYELPSFMERGRIFSR------REVRVIETGPDG-LFFTG-DGTGMLSVWKILAK 473 (479)
Q Consensus 413 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------~~v~~l~~s~~g-~l~sg-~~dg~v~vw~~~~~ 473 (479)
+ ++++++.|..|++|++.+++.+..+.+. .--+...|.... +++.- -..+.+.-||-.+.
T Consensus 318 k-yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 318 K-YILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred e-EEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 8 7888889999999999999998887652 112334454444 33333 23566677776553
No 124
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=4.7e-22 Score=186.98 Aligned_cols=196 Identities=21% Similarity=0.301 Sum_probs=145.0
Q ss_pred EEEcCC---EEEEEeCCCcEEEEEccCCCC--CcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcE
Q 011711 277 MVVANE---MLFAGAQDGNILVWKGIPNTQ--NPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEA 348 (479)
Q Consensus 277 ~~~~~~---~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~ 348 (479)
+.|+|- .|++++.||.|++|.+..+.. ....+...+..|...|+++.|+ .+.|++++.|-+|++||+++++.
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~ 712 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL 712 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh
Confidence 445432 899999999999999877543 2245667789999999999998 78999999999999999999999
Q ss_pred EEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe---CCC
Q 011711 349 VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC---NDD 423 (479)
Q Consensus 349 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~dg 423 (479)
...+.+|.+.|..++|+ |+.+++.+.||+|++|..++.+.. ++.....+........|.-+|..++++|- ...
T Consensus 713 ~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p--v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeR 790 (1012)
T KOG1445|consen 713 YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP--VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSER 790 (1012)
T ss_pred hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc--cccCCCCccCcceeEEEEecCcEEEEecccccchh
Confidence 99999999999999998 899999999999999998876532 33333333344444455578885555552 235
Q ss_pred eEEEeecCCCc--eeeeeec--cCceEEEEECCCc--eEEEEcCCCcEEEEEeccCC
Q 011711 424 SVHLYELPSFM--ERGRIFS--RREVRVIETGPDG--LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 424 ~v~iwd~~~~~--~~~~~~~--~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~~~ 474 (479)
+|.+||..+.. .+....- ...+.--.+.+|. +|++|-.|..|.+|++..+.
T Consensus 791 Qv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 791 QVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred hhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 68888876543 2222211 1222222344555 88999999999999986543
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.3e-20 Score=175.82 Aligned_cols=278 Identities=14% Similarity=0.091 Sum_probs=195.7
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEE-EEEeCCCcEEEEECCCCceEEEEecCCceeE--
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKL-YSGSRDGTVQLWDCHTGQSASVINLGAEVGS-- 238 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l-~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~-- 238 (479)
..+++++.|+.+++||+.++ +.+..+.+|.. +.+++|+|+++.+ ++++.|+.|++||..+++....+........
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEE
Confidence 35678899999999999887 67788877654 6789999999976 5677889999999999988777665443333
Q ss_pred EEeCCCEEEEE--cCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCC-cEEEEEccCCCCCcccceeeec
Q 011711 239 LICEGPWVFVG--MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDG-NILVWKGIPNTQNPFQLAALLK 313 (479)
Q Consensus 239 ~~~~~~~l~~~--~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~ 313 (479)
+.++++.++++ .++.+++||+.+...+........+.+++++++ .++++..++ .+.+||..+... .....
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-----~~~~~ 154 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-----VDNVL 154 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-----EEEEE
Confidence 33577766554 478999999998776544333445678888877 777777665 467788766432 22222
Q ss_pred CCCCCeEEEEEc--CCEEEE-EeCCCeEEEEECCCCcEEEEEeCCCC-------CcEEEEEc--CCEEEE-EeCCCeEEE
Q 011711 314 GHTRPVTCLAVG--GKRLYS-GSMDNTIRVWDLDTLEAVMTLNGHTD-------APMSLLCW--DQYLLS-CSLDNTIKV 380 (479)
Q Consensus 314 ~h~~~i~~l~~~--~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~h~~-------~v~~~~~~--~~~l~s-~s~dg~i~i 380 (479)
......++.|+ +.++++ +..++.|++||+++++.+..+..+.. ....+.++ +++++. .+.++.+.+
T Consensus 155 -~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 155 -VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred -cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 12234567775 777754 45699999999999988777653321 12345554 666444 455778999
Q ss_pred EEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECC
Q 011711 381 WIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGP 452 (479)
Q Consensus 381 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~ 452 (479)
||+++.+...... +..... .+.++|+|+.+++++..++.|.+||+.+++.+..+........++++|
T Consensus 234 ~d~~~~~~~~~~~-~~~~~~----~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 234 VDAKTYEVLDYLL-VGQRVW----QLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred EECCCCcEEEEEE-eCCCcc----eEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 9998776554332 222223 334579999544445679999999999999998888777788888875
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.9e-22 Score=173.96 Aligned_cols=286 Identities=16% Similarity=0.203 Sum_probs=202.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEecc
Q 011711 81 SQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWL 160 (479)
Q Consensus 81 ~p~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 160 (479)
+-...++||++.|+.++||.||++||+.+.|++||||++++-.. ....+++..- +-..+..+.|.+.
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~--~eHr~~R~nv-----------e~dhpT~V~FapD 143 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN--KEHRCIRQNV-----------EYDHPTRVVFAPD 143 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh--hhhhHhhccc-----------cCCCceEEEECCC
Confidence 55668899999999999999999999999999999998877221 1111111111 1112346666666
Q ss_pred CCeeE-eCCCCCeEEEeecCCCc--e---------eeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEE
Q 011711 161 SGNCV-KGDECRFWHSWFCGEGF--T---------MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS 228 (479)
Q Consensus 161 ~~~~~-~g~~d~~i~vw~~~~~~--~---------~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~ 228 (479)
...++ +.-...++++|...... . .+..-+-|+-.|..+-...++.+|+|++.|..|.+|++. |+.+.
T Consensus 144 c~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~ 222 (420)
T KOG2096|consen 144 CKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ 222 (420)
T ss_pred cceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee
Confidence 65443 33345678888774220 0 111223467778888888889999999999999999998 99888
Q ss_pred EEecCCc---eeEEEeCCCEEEEE-cCCeEEEEEcCCCc---------eEEecCCCccEEEEEEcCC--EEEEEeCCCcE
Q 011711 229 VINLGAE---VGSLICEGPWVFVG-MPNVVKAWHIESSA---------EFSLDGPVGEVYSMVVANE--MLFAGAQDGNI 293 (479)
Q Consensus 229 ~~~~~~~---~~~~~~~~~~l~~~-~~~~i~v~~~~~~~---------~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i 293 (479)
.+..+.. ...++++|++++++ ..-.+++|.+--++ .+++.+|...|.+++|+++ .+++.+.||++
T Consensus 223 ~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~w 302 (420)
T KOG2096|consen 223 SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKW 302 (420)
T ss_pred eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcE
Confidence 8876543 45677899998865 67899999874322 3578999999999999998 99999999999
Q ss_pred EEEEccCCCCCc--ccceeee----cCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCCCcEEEEE
Q 011711 294 LVWKGIPNTQNP--FQLAALL----KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDAPMSLLC 364 (479)
Q Consensus 294 ~iwd~~~~~~~~--~~~~~~~----~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~v~~~~~ 364 (479)
++||.+-.-... .+++... ....+.-.-+..+ ++.|+. +....++++..++++...+++ .|...|.++++
T Consensus 303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~ 381 (420)
T KOG2096|consen 303 RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISY 381 (420)
T ss_pred EEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEe
Confidence 999976432110 1111111 1112222245554 555554 456789999999988877774 68888999999
Q ss_pred c--CCEEEEEeCCCeEEEEE
Q 011711 365 W--DQYLLSCSLDNTIKVWI 382 (479)
Q Consensus 365 ~--~~~l~s~s~dg~i~iwd 382 (479)
+ |+++++++ |..++++-
T Consensus 382 ~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 382 SSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cCCCcEEeeec-ceeeeeec
Confidence 8 78888887 56787774
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.5e-22 Score=192.62 Aligned_cols=241 Identities=19% Similarity=0.299 Sum_probs=199.2
Q ss_pred ecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEe
Q 011711 189 EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL 267 (479)
Q Consensus 189 ~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~ 267 (479)
.+|+..-+.|+|.|+|++|++++.||.|++|+..... ....+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti------------------------------------- 52 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI------------------------------------- 52 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-------------------------------------
Confidence 4789999999999999999999999999999976542 11111
Q ss_pred cCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCC
Q 011711 268 DGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT 345 (479)
Q Consensus 268 ~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~ 345 (479)
..+...|.+++...+.|++|+.+++|.+|.+..+.. -..+....-++.+++++ |++++.|+.|-.|++-++.+
T Consensus 53 ~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~-----~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D 127 (933)
T KOG1274|consen 53 DISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE-----DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD 127 (933)
T ss_pred hccCceeEEEeecccceEEeeccceEEEeeCCCCCc-----cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc
Confidence 125667888888888999999999999999988754 22344456788899997 77999999999999999999
Q ss_pred CcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccc---cCcc-ceEEEeeeeCCCCCcEEEEE
Q 011711 346 LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH---NEDH-GVLALGGLNDPDGNPVLICS 419 (479)
Q Consensus 346 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~l~s~ 419 (479)
......+.+|..+|.++.++ +++|++.+-||.|++||+.++.....+... .+.. ..++....|+|+|.. ++..
T Consensus 128 ~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~ 206 (933)
T KOG1274|consen 128 SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVP 206 (933)
T ss_pred cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-EEee
Confidence 99999999999999999999 789999999999999999987665544432 2222 556667788999773 4555
Q ss_pred eCCCeEEEeecCCCceeeeeec---cCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 420 CNDDSVHLYELPSFMERGRIFS---RREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 420 ~~dg~v~iwd~~~~~~~~~~~~---~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
+.|+.|.+|+..+.+....+.. ...+..++|+|+| +||+++.||.|.|||+++
T Consensus 207 ~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 6799999999999988887764 4449999999999 999999999999999984
No 128
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.4e-22 Score=171.62 Aligned_cols=260 Identities=17% Similarity=0.196 Sum_probs=187.7
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEecc-CCeeE
Q 011711 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWL-SGNCV 165 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~~ 165 (479)
.+|++-|..+.|.+-|+++|++|.|++++||+.+.+.....-+. .++...+..-..+-.++. +..++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts------------~Wrah~~Si~rV~WAhPEfGqvvA 77 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTS------------SWRAHDGSIWRVVWAHPEFGQVVA 77 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEee------------eEEecCCcEEEEEecCccccceEE
Confidence 78999999999999999999999999999998655443211111 112211111122333333 34677
Q ss_pred eCCCCCeEEEeecCC--------CceeeEEEecccccEEEEEeCCC--CCEEEEEeCCCcEEEEECCCCceEEEEecCCc
Q 011711 166 KGDECRFWHSWFCGE--------GFTMLAKLEGHKKAVSGIALPLR--SDKLYSGSRDGTVQLWDCHTGQSASVINLGAE 235 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~--------~~~~~~~~~~H~~~V~~l~~s~~--~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~ 235 (479)
+.+.|+++.||.-.. ......++....+.|+++.|.|. |-.||+++.||++|||+...--.+....+..+
T Consensus 78 ~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 78 TCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred EEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence 899999999998731 13455677788899999999875 77899999999999999765433333222221
Q ss_pred eeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-----EEEEEeCC-----CcEEEEEccCCCCCc
Q 011711 236 VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-----MLFAGAQD-----GNILVWKGIPNTQNP 305 (479)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~g~~d-----g~i~iwd~~~~~~~~ 305 (479)
+..+. .....+.....|+.|++. +|++|+.+ +.++||....+..+
T Consensus 158 i~~~~------------------------~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK- 212 (361)
T KOG2445|consen 158 IQNVI------------------------DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK- 212 (361)
T ss_pred hhhcc------------------------CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-
Confidence 11100 112235566778888765 78888766 58999988766532
Q ss_pred ccceeeecCCCCCeEEEEEc------CCEEEEEeCCCeEEEEECCCC--------------------cEEEEEeCCCCCc
Q 011711 306 FQLAALLKGHTRPVTCLAVG------GKRLYSGSMDNTIRVWDLDTL--------------------EAVMTLNGHTDAP 359 (479)
Q Consensus 306 ~~~~~~~~~h~~~i~~l~~~------~~~l~sgs~dg~I~iwd~~~~--------------------~~~~~~~~h~~~v 359 (479)
+..+..+.+|..+|+.|+|. -..|++++.|| |+||.+... +.+..+..|.+.|
T Consensus 213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V 291 (361)
T KOG2445|consen 213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV 291 (361)
T ss_pred eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce
Confidence 55677788999999999995 35699999999 999998731 2355677899999
Q ss_pred EEEEEc--CCEEEEEeCCCeEEEEEcC
Q 011711 360 MSLLCW--DQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 360 ~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (479)
..+.++ |..|.+.+.||.||+|...
T Consensus 292 Wrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 292 WRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEEeeeeeEEeecCCCceeeehhhh
Confidence 999998 9999999999999999654
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=6.7e-22 Score=181.26 Aligned_cols=269 Identities=20% Similarity=0.377 Sum_probs=212.2
Q ss_pred cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc---eEEEEecC---Ccee--EEEeCCCEEEEE-cCCeEEEEEcC
Q 011711 190 GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ---SASVINLG---AEVG--SLICEGPWVFVG-MPNVVKAWHIE 260 (479)
Q Consensus 190 ~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~---~~~~~~~~---~~~~--~~~~~~~~l~~~-~~~~i~v~~~~ 260 (479)
.|..-|.++..+...++++||+. |.|+|||+.... .+..+..- .-+. .+.++++.|++| .-.++.+||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58889999999999999999997 789999996532 22222221 1222 234578777665 66799999998
Q ss_pred CCceE---EecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEe
Q 011711 261 SSAEF---SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGS 333 (479)
Q Consensus 261 ~~~~~---~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs 333 (479)
..... .+....-.+++++.++| ..+++..||.|.|||+.... ++..+++|.+.+.||.++ |..|.||+
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-----~VrqfqGhtDGascIdis~dGtklWTGG 570 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-----LVRQFQGHTDGASCIDISKDGTKLWTGG 570 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-----eeecccCCCCCceeEEecCCCceeecCC
Confidence 76643 23333345778888888 88899999999999998854 588899999999999997 99999999
Q ss_pred CCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCC
Q 011711 334 MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPD 411 (479)
Q Consensus 334 ~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (479)
-|.+|+.||+++++.+.... ..+.|+++.+. +++++.|-..+.+-|......+. ..+..|.. ..+++.|.+.
T Consensus 571 lDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlhlheS----cVLSlKFa~c 644 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLHLHES----CVLSLKFAYC 644 (705)
T ss_pred Cccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc-eeeccccc----EEEEEEeccc
Confidence 99999999999987765443 34668888776 78999999999998887755433 23333333 3455556689
Q ss_pred CCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 412 GNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 412 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
|+ ++++.+.|+.+..|...-+..+.+......|.++.++.|. +|+||+.|..-.||.+.
T Consensus 645 Gk-wfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 645 GK-WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred Cc-eeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 98 8888889999999999999999998889999999999999 99999999999999863
No 130
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=9.2e-22 Score=178.08 Aligned_cols=232 Identities=20% Similarity=0.217 Sum_probs=181.7
Q ss_pred CeeEeCCCCCeEEEeecCCC--ceeeEE------------------EecccccEEEEEeCCC-CCEEEEEeCCCcEEEEE
Q 011711 162 GNCVKGDECRFWHSWFCGEG--FTMLAK------------------LEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWD 220 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~--~~~~~~------------------~~~H~~~V~~l~~s~~-~~~l~s~s~Dg~v~vwd 220 (479)
+.++.|..|..|.|||+.-- ..+..+ -.+|+++|.+++|+.. .+.|||||.|.+|++||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 37889999999999999621 111122 2379999999999765 46799999999999999
Q ss_pred CCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEE
Q 011711 221 CHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWK 297 (479)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd 297 (479)
+.++++..++. .|...|.++.|++. .|++|+.|++|.+.|
T Consensus 273 ~~~g~p~~s~~-------------------------------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 273 VDTGKPKSSIT-------------------------------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred cCCCCcceehh-------------------------------------hcCCceeEEEecCCCceEEEeccccceEEeee
Confidence 99999887664 47888999999876 999999999999999
Q ss_pred ccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCCCcEEEEEc---CCEEE
Q 011711 298 GIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW---DQYLL 370 (479)
Q Consensus 298 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~v~~~~~~---~~~l~ 370 (479)
.+..... -. .-...+.|-.++|+ ...++++..||+|+-+|+|.. +++.++++|.+.|.++.++ ..+++
T Consensus 316 ~R~~~~s----~~-~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 316 CRDPSNS----GK-EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred ccCcccc----Cc-eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCccee
Confidence 9863321 11 11235678888886 678999999999999999985 9999999999999999998 57999
Q ss_pred EEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceee
Q 011711 371 SCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERG 437 (479)
Q Consensus 371 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 437 (479)
+++.|+.+++|++..... .....+....+. ..++...|+-..+++.|+..+.+++||+.+...+.
T Consensus 391 t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~r-l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSP-KSVKEHSFKLGR-LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred eccccceEEEEeecCCCC-cccccccccccc-eeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 999999999999875443 223333333332 34445568877789999999999999998765543
No 131
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=5.5e-21 Score=190.94 Aligned_cols=255 Identities=21% Similarity=0.330 Sum_probs=201.0
Q ss_pred ccccEEEEEeCCCCCEEEEEe--CCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcC-CCceEEe
Q 011711 191 HKKAVSGIALPLRSDKLYSGS--RDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIE-SSAEFSL 267 (479)
Q Consensus 191 H~~~V~~l~~s~~~~~l~s~s--~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~-~~~~~~~ 267 (479)
++..|.+|..+||+..++||+ .|+.++||+.+.--.. . ..++.. .......
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~--~------------------------~~~~~~l~k~l~~m 65 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE--K------------------------EEKNENLPKHLCTM 65 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccch--h------------------------hhhhcccchhheee
Confidence 356699999999999999999 9999999997532100 0 001221 2223456
Q ss_pred cCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccC-------------CCCCcccceeeecCCCCCeEEEEEc--CCEEE
Q 011711 268 DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIP-------------NTQNPFQLAALLKGHTRPVTCLAVG--GKRLY 330 (479)
Q Consensus 268 ~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~-------------~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~ 330 (479)
..|.+.|.|+.|++| +||+|+.|+.|.+|+... .....++....+.+|...|..++|+ +.+++
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV 145 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence 789999999999998 999999999999999873 0112355678899999999999997 89999
Q ss_pred EEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccC--ccceEEEee
Q 011711 331 SGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE--DHGVLALGG 406 (479)
Q Consensus 331 sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~ 406 (479)
+++.|++|.+||.++.+.+..+.+|.+.|..+.|+ |+||++-+.|++|+||+..+.+....+..+-+ ........+
T Consensus 146 S~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~Rl 225 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRL 225 (942)
T ss_pred EecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeec
Confidence 99999999999999999999999999999999999 89999999999999999877666555555433 334455667
Q ss_pred eeCCCCCcEEEEE-e---CCCeEEEeecCCCceeeeee-ccCceEEEEECCC------c------------eEEEEcCCC
Q 011711 407 LNDPDGNPVLICS-C---NDDSVHLYELPSFMERGRIF-SRREVRVIETGPD------G------------LFFTGDGTG 463 (479)
Q Consensus 407 ~~~~~~~~~l~s~-~---~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~------g------------~l~sg~~dg 463 (479)
.|+|||+ +|++. + .-.++.|.+-.+.+.-..+. |..++.++.|+|. . .+++|+.|+
T Consensus 226 SWSPDG~-~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 226 SWSPDGH-HLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR 304 (942)
T ss_pred ccCCCcC-eecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence 7899999 66654 2 23468888887776544444 6889999999971 1 468899999
Q ss_pred cEEEEEecc
Q 011711 464 MLSVWKILA 472 (479)
Q Consensus 464 ~v~vw~~~~ 472 (479)
+|.||....
T Consensus 305 SlSVW~T~~ 313 (942)
T KOG0973|consen 305 SLSVWNTAL 313 (942)
T ss_pred cEEEEecCC
Confidence 999999744
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=3.3e-19 Score=167.90 Aligned_cols=264 Identities=14% Similarity=0.131 Sum_probs=184.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE--eCCCEEE-E-EcCCeEEEEEcCCCceEEecCCCccEEEEEE
Q 011711 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVF-V-GMPNVVKAWHIESSAEFSLDGPVGEVYSMVV 279 (479)
Q Consensus 204 ~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~-~-~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~ 279 (479)
++.++|++.|+.|++||+.+++.+..+........+. +++..++ + +.++.|++||..+++..........+..+++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 3578899999999999999999888887655444443 4677654 3 3678999999998876542222233567788
Q ss_pred cCC--EEEE-EeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC-eEEEEECCCCcEEEEEe
Q 011711 280 ANE--MLFA-GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN-TIRVWDLDTLEAVMTLN 353 (479)
Q Consensus 280 ~~~--~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~ 353 (479)
+++ .+++ +..++.|++||+.+.. .+..+.. ...+.+++++ +.++++++.++ .+.+||.++++.+..+.
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~~~-----~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIETRK-----VLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCe-----EEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 876 4544 4568999999997743 2333332 2345678876 78888888765 56788999888776554
Q ss_pred CCCCCcEEEEEc--CCEEE-EEeCCCeEEEEEcCCCcceEEeccccCc---cceEEEeeeeCCCCCcEEEEEeCCCeEEE
Q 011711 354 GHTDAPMSLLCW--DQYLL-SCSLDNTIKVWIMTEEGNLEVAYTHNED---HGVLALGGLNDPDGNPVLICSCNDDSVHL 427 (479)
Q Consensus 354 ~h~~~v~~~~~~--~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~dg~v~i 427 (479)
.. ..+..+.++ +++++ ++..++.|++||+++.+.+..+..+... .......+.++|+++.++++.+.++.+.+
T Consensus 155 ~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 155 VD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred cC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 32 234455554 67775 4456999999999987665544322111 01111223457999865565566778999
Q ss_pred eecCCCceeeeeeccCceEEEEECCCc-eEEEE-cCCCcEEEEEeccCC
Q 011711 428 YELPSFMERGRIFSRREVRVIETGPDG-LFFTG-DGTGMLSVWKILAKP 474 (479)
Q Consensus 428 wd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg-~~dg~v~vw~~~~~~ 474 (479)
||+.+++....+.+...+.+++|+|+| .|+++ +.+|.|.+||+...+
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 999998887766667789999999999 77765 569999999998765
No 133
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2e-20 Score=161.95 Aligned_cols=245 Identities=16% Similarity=0.291 Sum_probs=180.8
Q ss_pred ecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEec
Q 011711 189 EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLD 268 (479)
Q Consensus 189 ~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~ 268 (479)
.+|++-|.++.|.+.|+.+|||+.|++|+|||..+........ -...
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T---------------------------------s~Wr 56 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT---------------------------------SSWR 56 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe---------------------------------eeEE
Confidence 4799999999999999999999999999999975543221111 1234
Q ss_pred CCCccEEEEEEcCC----EEEEEeCCCcEEEEEccCCCC----CcccceeeecCCCCCeEEEEEc----CCEEEEEeCCC
Q 011711 269 GPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQ----NPFQLAALLKGHTRPVTCLAVG----GKRLYSGSMDN 336 (479)
Q Consensus 269 ~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~~h~~~i~~l~~~----~~~l~sgs~dg 336 (479)
.|.+.|..+.|.+- .+|+++.|+++.||.-..... ..+....++......|+.+.|. |-.+++++.||
T Consensus 57 ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG 136 (361)
T KOG2445|consen 57 AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG 136 (361)
T ss_pred ecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc
Confidence 68889999999643 899999999999998532211 1244556777888999999996 77899999999
Q ss_pred eEEEEECCC------CcEEEEEe-------CCCCCcEEEEEc-----CCEEEEEeCC-----CeEEEEEcCCCc----ce
Q 011711 337 TIRVWDLDT------LEAVMTLN-------GHTDAPMSLLCW-----DQYLLSCSLD-----NTIKVWIMTEEG----NL 389 (479)
Q Consensus 337 ~I~iwd~~~------~~~~~~~~-------~h~~~v~~~~~~-----~~~l~s~s~d-----g~i~iwd~~~~~----~~ 389 (479)
.+|||+.-. ..+..+++ .+.....|+.|. ..+|+.|+.+ +.++||...... .+
T Consensus 137 ~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv 216 (361)
T KOG2445|consen 137 ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV 216 (361)
T ss_pred EEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee
Confidence 999998654 23333333 455667788877 4677777766 589999876654 23
Q ss_pred EEeccccCccceEEEeeeeCCCC---CcEEEEEeCCCeEEEeecCCCc--------------------eeeee-eccCce
Q 011711 390 EVAYTHNEDHGVLALGGLNDPDG---NPVLICSCNDDSVHLYELPSFM--------------------ERGRI-FSRREV 445 (479)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~dg~v~iwd~~~~~--------------------~~~~~-~~~~~v 445 (479)
..+..+..++..++++ |+- -.+|++++.|| |+||.+.... .+..+ .|.++|
T Consensus 217 a~L~d~~dpI~di~wA----Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V 291 (361)
T KOG2445|consen 217 AELPDHTDPIRDISWA----PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV 291 (361)
T ss_pred hhcCCCCCcceeeeec----cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce
Confidence 3444566666666665 432 24899999999 9999987411 11112 146799
Q ss_pred EEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 446 RVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 446 ~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
..+.|.-.| .|.+.|.||.|++|+..
T Consensus 292 Wrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 292 WRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEEeeeeeEEeecCCCceeeehhhh
Confidence 999999999 99999999999999854
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=5.4e-21 Score=169.67 Aligned_cols=251 Identities=20% Similarity=0.262 Sum_probs=184.9
Q ss_pred CCCCCCCCCCCCCCC--ceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccC---
Q 011711 87 SNHKKSPPSYNCPKN--NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS--- 161 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~--g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~--- 161 (479)
.+|.+.++.+..++- ..+.||-++.|.++||++............. ... ......-.+.+|........|..
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~-~~~--s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLE-VKD--SEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcccc-ccc--cccCceEEecccCccceeeecccccc
Confidence 457777777777554 4778888999999999988866543332211 111 12234455666666655555543
Q ss_pred CeeEeCCCCCeEEEeecCCCc--eeeEEEecccccEEEEEeCCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCceeE
Q 011711 162 GNCVKGDECRFWHSWFCGEGF--TMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~--~~~~~~~~H~~~V~~l~~s~~~-~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~ 238 (479)
+.+++|+--+.|++|...++. .-...|.+|+..|.+|+|||.. ..|+|||.||+|+|||++.+.....
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~--------- 295 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA--------- 295 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce---------
Confidence 478999999999999998762 1234577899999999999964 5799999999999999998743322
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCC
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~ 316 (479)
+..+.|.+.|+.+.|+.. +|++|+.||++.|||++.-+. .+++..++-|.
T Consensus 296 --------------------------~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~--~~pVA~fk~Hk 347 (440)
T KOG0302|consen 296 --------------------------VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS--GQPVATFKYHK 347 (440)
T ss_pred --------------------------eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC--CCcceeEEecc
Confidence 223568889999999977 899999999999999998765 36788999999
Q ss_pred CCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcE----------------EEEEeCCCC--CcEEEEEc---CCEEEEE
Q 011711 317 RPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEA----------------VMTLNGHTD--APMSLLCW---DQYLLSC 372 (479)
Q Consensus 317 ~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~----------------~~~~~~h~~--~v~~~~~~---~~~l~s~ 372 (479)
.+|+|+.|+ ...|++++.|.+|.+||+....- -+-+-.|.+ .+..+.|. +.++++.
T Consensus 348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsT 427 (440)
T KOG0302|consen 348 APITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVST 427 (440)
T ss_pred CCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEe
Confidence 999999998 77899999999999999853211 011122322 35556666 5688888
Q ss_pred eCCCe
Q 011711 373 SLDNT 377 (479)
Q Consensus 373 s~dg~ 377 (479)
+.||.
T Consensus 428 a~dGf 432 (440)
T KOG0302|consen 428 AIDGF 432 (440)
T ss_pred cccce
Confidence 88884
No 135
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=8.3e-19 Score=170.38 Aligned_cols=357 Identities=17% Similarity=0.224 Sum_probs=257.1
Q ss_pred CCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCC
Q 011711 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGD 168 (479)
Q Consensus 89 h~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~ 168 (479)
+.+.|.+++-..+-.|.|+|. .|-+|.+.. -...+...+....--..+.+..++++.
T Consensus 75 lp~~I~alas~~~~vy~A~g~---~i~~~~rgk--------------------~i~~~~~~~~a~v~~l~~fGe~lia~d 131 (910)
T KOG1539|consen 75 LPDKITALASDKDYVYVASGN---KIYAYARGK--------------------HIRHTTLLHGAKVHLLLPFGEHLIAVD 131 (910)
T ss_pred CCCceEEEEecCceEEEecCc---EEEEEEccc--------------------eEEEEeccccceEEEEeeecceEEEEE
Confidence 445668888788877777775 344442110 112233344445666677888999999
Q ss_pred CCCeEEEeecCCCcee----eEEEecccccEEEEEeCCC--CCEEEEEeCCCcEEEEECCCCceEEEEecCC-ceeEEEe
Q 011711 169 ECRFWHSWFCGEGFTM----LAKLEGHKKAVSGIALPLR--SDKLYSGSRDGTVQLWDCHTGQSASVINLGA-EVGSLIC 241 (479)
Q Consensus 169 ~d~~i~vw~~~~~~~~----~~~~~~H~~~V~~l~~s~~--~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~ 241 (479)
.++.+.||+.....+. +..++...+.|+++.- |. =+.++.|+.+|.+++||+++++.+.+++... .+.++..
T Consensus 132 ~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieq 210 (910)
T KOG1539|consen 132 ISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQ 210 (910)
T ss_pred ccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEecc
Confidence 9999999999874111 2333333344888874 43 3569999999999999999999999998654 3444443
Q ss_pred C--CCEEEEE-cCCeEEEEEcCCCceEEecCC-CccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecC
Q 011711 242 E--GPWVFVG-MPNVVKAWHIESSAEFSLDGP-VGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (479)
Q Consensus 242 ~--~~~l~~~-~~~~i~v~~~~~~~~~~~~~~-~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 314 (479)
. =..++.| .+|+|.+++++.++.+....+ .+.|++++|..| .+++|+..|.+.+||++.... .......
T Consensus 211 sPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl----~~v~~na 286 (910)
T KOG1539|consen 211 SPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL----INVTRNA 286 (910)
T ss_pred CCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee----eeeeecc
Confidence 2 2355555 899999999999998765555 599999999855 899999999999999988653 2334458
Q ss_pred CCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCC----cEEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCC
Q 011711 315 HTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL----EAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 315 h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~ 385 (479)
|.+.|....+- ...+++++.|..+++|=.+++ +.++.-.+|..+..++.+. +.++.+++.|++.+.+++..
T Consensus 287 h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~ 366 (910)
T KOG1539|consen 287 HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVIS 366 (910)
T ss_pred ccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhH
Confidence 88888888884 678899999999998865543 4566667888888888887 56788888888777775431
Q ss_pred C-----------------------------------------------------------------cceEEecccc--Cc
Q 011711 386 E-----------------------------------------------------------------GNLEVAYTHN--ED 398 (479)
Q Consensus 386 ~-----------------------------------------------------------------~~~~~~~~~~--~~ 398 (479)
. ..=+....+. ..
T Consensus 367 e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~ 446 (910)
T KOG1539|consen 367 ESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK 446 (910)
T ss_pred HHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc
Confidence 1 0000000000 00
Q ss_pred cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee----eccCceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 399 HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI----FSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
....+.++..++.|+ +.+.|...|.|.+|++.++-....+ .|+.+|+.++...-+ .+++++.+|.+.+|+++++
T Consensus 447 ~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 447 DDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK 525 (910)
T ss_pred cCcceEEEEEeccCc-eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc
Confidence 112223334467788 7788999999999999999998888 579999999999888 9999999999999999875
Q ss_pred C
Q 011711 474 P 474 (479)
Q Consensus 474 ~ 474 (479)
.
T Consensus 526 ~ 526 (910)
T KOG1539|consen 526 V 526 (910)
T ss_pred c
Confidence 4
No 136
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=4.2e-21 Score=176.11 Aligned_cols=276 Identities=18% Similarity=0.272 Sum_probs=216.3
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEE-EeccCCeeE
Q 011711 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVC-YHWLSGNCV 165 (479)
Q Consensus 87 ~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c-~~~~~~~~~ 165 (479)
..|..-|-++..|...+++.+|+ .|-|+|||+..|.. ..+..+++|- .....-+.| +.+.+..++
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~-k~PvsqLdcl------------~rdnyiRSckL~pdgrtLi 481 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGN-KSPVSQLDCL------------NRDNYIRSCKLLPDGRTLI 481 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCC-CCcccccccc------------CcccceeeeEecCCCceEE
Confidence 45666667788899999999999 89999999998843 2223333332 111223445 566777999
Q ss_pred eCCCCCeEEEeecCCCc-eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCc---eeEEEe
Q 011711 166 KGDECRFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE---VGSLIC 241 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~-~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~---~~~~~~ 241 (479)
+|++-.++.|||+.... ..-..+..-.-...+++.+||.+..+++..||.|.|||+.+...++.++.+.. ...+..
T Consensus 482 vGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~ 561 (705)
T KOG0639|consen 482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK 561 (705)
T ss_pred eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC
Confidence 99999999999998652 22234444445678899999999999999999999999999999999986544 333445
Q ss_pred CCCEEEEE-cCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 242 EGPWVFVG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 242 ~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
+|.-|-+| -|++++.||++++...........|.++...|+ .+++|-+++.+.+....... ...+..|..-
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~------kyqlhlheSc 635 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE------KYQLHLHESC 635 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc------ceeecccccE
Confidence 68777664 899999999999998877778889999988876 99999999999998876543 3556779999
Q ss_pred eEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEE--cCCEEEEEeCCCeEEEEEc
Q 011711 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 319 i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~s~dg~i~iwd~ 383 (479)
|.++.|. |+++++.+.|.-+..|..--|..+...+. .+.|.+... ++++|++|+.|....||.+
T Consensus 636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999996 99999999999999999988888877764 344555544 4899999999998888865
No 137
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=5.9e-20 Score=172.04 Aligned_cols=275 Identities=16% Similarity=0.176 Sum_probs=205.8
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe----CCCEEEEEcCCeEEEEE
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC----EGPWVFVGMPNVVKAWH 258 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~i~v~~ 258 (479)
.+-..++||++.|.+|+..|.|.+|++|+.||+|+||.+.+|.++..+.....+.++.+ +..+|+++....+.+.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 34557899999999999999999999999999999999999999999999999988886 33455555444444443
Q ss_pred cCCC---------------------------------ce-----EEecCCCccEEEEEEcCC--EEEEEeCC---CcEEE
Q 011711 259 IESS---------------------------------AE-----FSLDGPVGEVYSMVVANE--MLFAGAQD---GNILV 295 (479)
Q Consensus 259 ~~~~---------------------------------~~-----~~~~~~~~~v~~~~~~~~--~l~~g~~d---g~i~i 295 (479)
..-+ .+ .....|...|..+.|+.. +|++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2211 00 123346678888999865 88886653 56889
Q ss_pred EEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEE
Q 011711 296 WKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLS 371 (479)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s 371 (479)
+++..... ...+....+.|.++.|+ ..+|++++. ..|+|||+...++++++......|..++.+ |+.|+.
T Consensus 551 HQLSK~~s-----Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 551 HQLSKRKS-----QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred Eecccccc-----cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 99876543 23344556778999997 556777664 689999999988888887777777777777 799999
Q ss_pred EeCCCeEEEEEcCCC-cceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC------CCcee---eeee-
Q 011711 372 CSLDNTIKVWIMTEE-GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP------SFMER---GRIF- 440 (479)
Q Consensus 372 ~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~------~~~~~---~~~~- 440 (479)
++.|+.+..+|+.-. +..+.+..|...+..+++. +.- +++++|+.||++.||.-. ....+ ..+.
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H----~ry-PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g 699 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFH----KRY-PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG 699 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhc----ccc-ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC
Confidence 999999999999765 3455566677777666662 443 499999999999998532 11112 2222
Q ss_pred c----cCceEEEEECCCc-eEEEEcCCCcEEEE
Q 011711 441 S----RREVRVIETGPDG-LFFTGDGTGMLSVW 468 (479)
Q Consensus 441 ~----~~~v~~l~~s~~g-~l~sg~~dg~v~vw 468 (479)
| ...|....|+|.. +|++++.||+|++|
T Consensus 700 H~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 700 HEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ceeecccceEeecccCCCceEEecCCCceEEee
Confidence 1 3448888999999 99999999999998
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1e-19 Score=178.50 Aligned_cols=257 Identities=19% Similarity=0.198 Sum_probs=200.3
Q ss_pred eecCCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceE
Q 011711 148 ERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA 227 (479)
Q Consensus 148 ~~~~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~ 227 (479)
+...-..+|+.+.+..+.+++.|+.|++|+.....+.-..+.-|...|.+++.. +.+|++|+.+++|.+|...+++.-
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc
Confidence 333446899999999999999999999999976634444454488889988864 559999999999999999887643
Q ss_pred EEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCc
Q 011711 228 SVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNP 305 (479)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~ 305 (479)
..+. ...-++..++++.+ +++.|+.|-.|++.++.....
T Consensus 90 ~iL~-------------------------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-- 130 (933)
T KOG1274|consen 90 TILA-------------------------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-- 130 (933)
T ss_pred ceee-------------------------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccch--
Confidence 2221 12345667777766 999999999999999888654
Q ss_pred ccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCC--------CCCcEEEEEc--CCEEEEEe
Q 011711 306 FQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH--------TDAPMSLLCW--DQYLLSCS 373 (479)
Q Consensus 306 ~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h--------~~~v~~~~~~--~~~l~s~s 373 (479)
...+.+|.++|.++.++ +++|++.+.||.|++||+.++.+..++.+- ...+..++|. +..++..+
T Consensus 131 ---~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 131 ---EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred ---heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec
Confidence 67789999999999998 899999999999999999999887776532 2224455666 56888888
Q ss_pred CCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCC
Q 011711 374 LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPD 453 (479)
Q Consensus 374 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~ 453 (479)
.|+.|++|+.........+........ ...+.|+|+|+ +||+++.||.|.|||.++.+. -.....|.+++|.|+
T Consensus 208 ~d~~Vkvy~r~~we~~f~Lr~~~~ss~--~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 208 VDNTVKVYSRKGWELQFKLRDKLSSSK--FSDLQWSPNGK-YIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPN 281 (933)
T ss_pred cCCeEEEEccCCceeheeecccccccc--eEEEEEcCCCc-EEeeeccCCcEEEEecccchh---ccccceeEEEecCCC
Confidence 999999999988776655554333222 34456789999 899999999999999998322 122678999999998
Q ss_pred c
Q 011711 454 G 454 (479)
Q Consensus 454 g 454 (479)
.
T Consensus 282 ~ 282 (933)
T KOG1274|consen 282 A 282 (933)
T ss_pred C
Confidence 7
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=7.3e-20 Score=166.39 Aligned_cols=280 Identities=21% Similarity=0.258 Sum_probs=202.8
Q ss_pred CCCeEE--EeccCC--eeEeCCCCCeEEEeecC---CCceeeEEEecccccEEEEEeCCC-CCEEEEEeCCCcEEEEECC
Q 011711 151 TPKNVC--YHWLSG--NCVKGDECRFWHSWFCG---EGFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCH 222 (479)
Q Consensus 151 ~~~~~c--~~~~~~--~~~~g~~d~~i~vw~~~---~~~~~~~~~~~H~~~V~~l~~s~~-~~~l~s~s~Dg~v~vwd~~ 222 (479)
...+.| +++... .+++|++-|.|-+||+. ....-+..+..|..+|.+|.|+|. ...+++.|.||+|+.-|++
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 334445 444443 67899999999999994 334567778899999999999885 4689999999999999998
Q ss_pred CCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccC
Q 011711 223 TGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIP 300 (479)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~ 300 (479)
.+.....+... .....+.++.++.+ .++.|..=|...+||+++
T Consensus 266 ~~i~e~v~s~~-----------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 266 GNISEEVLSLD-----------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred chhhHHHhhcC-----------------------------------ccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence 76543333211 12233445555544 667777777999999998
Q ss_pred CCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcE----EEEEeCCCCCcEEEEEc--CCEEEE
Q 011711 301 NTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEA----VMTLNGHTDAPMSLLCW--DQYLLS 371 (479)
Q Consensus 301 ~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~----~~~~~~h~~~v~~~~~~--~~~l~s 371 (479)
+... ...+..|...|++++++ ..+|+|++.|++.+|||++.... +.....|.-.|.+..|+ +..|++
T Consensus 311 ~~s~----~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~T 386 (498)
T KOG4328|consen 311 DGSE----YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLT 386 (498)
T ss_pred CCcc----chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEe
Confidence 7542 44567788899999997 77899999999999999987432 23345688888888887 455999
Q ss_pred EeCCCeEEEEEcC----CCcceEEeccccCc--cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec--cC
Q 011711 372 CSLDNTIKVWIMT----EEGNLEVAYTHNED--HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS--RR 443 (479)
Q Consensus 372 ~s~dg~i~iwd~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~ 443 (479)
.+.|..|+|||.. ...+...+ .|+.. .....+.+.|.|+.. ++++|-.-..|-|+|-+.++.+..+.. ..
T Consensus 387 T~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~P~~~ 464 (498)
T KOG4328|consen 387 TCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHDPESS 464 (498)
T ss_pred eccCCceEEeecccccccCCcccee-eccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccCcccc
Confidence 9999999999984 22233333 33322 334456677889877 889898888999999999887777654 22
Q ss_pred ceE-EEEECCCc--eEEEEcCCCcEEEEEec
Q 011711 444 EVR-VIETGPDG--LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 444 ~v~-~l~~s~~g--~l~sg~~dg~v~vw~~~ 471 (479)
.|. -..|+|-+ +++.++..|.|+||--+
T Consensus 465 tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 465 TIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccceeecccccceeccCCccceEEEEecC
Confidence 333 45899977 44455567888888643
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-19 Score=165.23 Aligned_cols=274 Identities=12% Similarity=0.156 Sum_probs=205.5
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCC-ceeeEEEecccccEEEEEeCCCCC-EEEEEeCCCcEEEEECCCCceEEEE
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVI 230 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~H~~~V~~l~~s~~~~-~l~s~s~Dg~v~vwd~~~~~~~~~~ 230 (479)
.++-|++....+++++.|+++++|.++-. .+.++.+.--..+|.+.+|.|+|. .+++++.-..+..||+.+.+....-
T Consensus 217 ~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 217 TSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK 296 (514)
T ss_pred eEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccccc
Confidence 46778888999999999999999999643 356677766789999999999999 8999999999999999887755433
Q ss_pred ecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccc
Q 011711 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQL 308 (479)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~ 308 (479)
..... ....+....++++ +|+..+..|.|.+....++. .
T Consensus 297 ~~~g~----------------------------------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e-----l 337 (514)
T KOG2055|consen 297 PPYGV----------------------------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE-----L 337 (514)
T ss_pred CCCCc----------------------------------ccchhheeEecCCCCeEEEcccCceEEeehhhhhh-----h
Confidence 21110 1122334444444 89999999999999877754 3
Q ss_pred eeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCC---CcEEEEEcCCEEEEEeCCCeEEEEEc
Q 011711 309 AALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD---APMSLLCWDQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 309 ~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~---~v~~~~~~~~~l~s~s~dg~i~iwd~ 383 (479)
+..++ -.+.|..++|+ +..|++.+.+|.|.+||+++..+++.+....+ .-.+++.++.+|++|+..|.|.|||.
T Consensus 338 i~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 338 ITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred hheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 44433 35678888885 88899999999999999999999999874322 23444455899999999999999996
Q ss_pred CCC------cceEEeccccCccceEEEeeeeCCCCCcEEEEEe--CCCeEEEeecCCCceeeeeec----cCceEEEEEC
Q 011711 384 TEE------GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC--NDDSVHLYELPSFMERGRIFS----RREVRVIETG 451 (479)
Q Consensus 384 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~----~~~v~~l~~s 451 (479)
++. +++..+......+..+. |+++.+ +|+.++ .+..+++-.+++......++. -+.|+||+|+
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~----Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQ----FNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeee----eCcchh-hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence 542 22333333333334444 469988 666554 467899999888766666554 4669999999
Q ss_pred CCc-eEEEEcCCCcEEEEEec
Q 011711 452 PDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 452 ~~g-~l~sg~~dg~v~vw~~~ 471 (479)
|.+ +|+.|..+|.|.+|.+.
T Consensus 492 P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 492 PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCceEEeecCCCceeeEeec
Confidence 988 99999999999999975
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=6.4e-21 Score=183.49 Aligned_cols=286 Identities=15% Similarity=0.199 Sum_probs=200.4
Q ss_pred CCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCCC
Q 011711 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECR 171 (479)
Q Consensus 92 ~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d~ 171 (479)
..++++.+++-.-++.++ --..+|+......+.++ -.+ .. +.+....-...+...-....+.+++.+..|
T Consensus 41 ~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~-~~~---~~-----k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG 110 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEK-CNH---RF-----KTKQNKFYSAADVKWGQLYSNLIATCSTNG 110 (839)
T ss_pred ccceEeecCCcceeEEec-ccceeeEeeCcccCCcc-eee---ec-----ccccceeeehhhcccccchhhhheeecCCC
Confidence 346677777777777777 55667775444433111 000 00 111111111222222333455778999999
Q ss_pred eEEEeecCC--CceeeEEEecccccEEEEEeCCC-CCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEE
Q 011711 172 FWHSWFCGE--GFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFV 248 (479)
Q Consensus 172 ~i~vw~~~~--~~~~~~~~~~H~~~V~~l~~s~~-~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (479)
.|.+||+.. ..+.+..|..|+..|+++.|++. ..+|+|||.||+|++||++..+...++.
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~----------------- 173 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR----------------- 173 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-----------------
Confidence 999999987 34777889999999999999764 5789999999999999998876654443
Q ss_pred EcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc
Q 011711 249 GMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG 325 (479)
Q Consensus 249 ~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~ 325 (479)
+....|..+.|+|. .++++...|.+++||++.... ....+.+|.++|.|+.|+
T Consensus 174 --------------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r----~~~k~~AH~GpV~c~nwh 229 (839)
T KOG0269|consen 174 --------------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR----CEKKLTAHNGPVLCLNWH 229 (839)
T ss_pred --------------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchh----HHHHhhcccCceEEEeec
Confidence 35566778888765 999999999999999998753 566788999999999997
Q ss_pred --CCEEEEEeCCCeEEEEECCCCcEEEEEeCCC-CCcEEEEEc---CCEEEEEeC--CCeEEEEEcCCCcceE-Eecccc
Q 011711 326 --GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT-DAPMSLLCW---DQYLLSCSL--DNTIKVWIMTEEGNLE-VAYTHN 396 (479)
Q Consensus 326 --~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~v~~~~~~---~~~l~s~s~--dg~i~iwd~~~~~~~~-~~~~~~ 396 (479)
+.+|+||+.|+.|+|||+.+.+.......++ .++..+.|- ...|++++. |-.|+|||++..-... .+..|.
T Consensus 230 Pnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 230 PNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred CCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence 8899999999999999998765543333333 346667776 356777765 7899999998775443 344455
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
...+.+++. ......+.+++.|++|..-.+++
T Consensus 310 ~~vt~i~W~----~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 310 DSVTGIAWD----SGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ccccceecc----CCCceeeEeecCccHHHHhhhhc
Confidence 555555552 22334788889999887655544
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=7.1e-22 Score=188.59 Aligned_cols=241 Identities=24% Similarity=0.381 Sum_probs=202.4
Q ss_pred CCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEE
Q 011711 168 DECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247 (479)
Q Consensus 168 ~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (479)
..+..+++|+.. .+..|...|.++..-..++.+++|+.|..+-+|.+..-..+.
T Consensus 11 ~~~t~Lr~~~~~-------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~------------------- 64 (825)
T KOG0267|consen 11 KRATKLRVWDTR-------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT------------------- 64 (825)
T ss_pred eeeeccccccch-------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-------------------
Confidence 334556677753 355789999999887788999999999999999886543332
Q ss_pred EEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc
Q 011711 248 VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG 325 (479)
Q Consensus 248 ~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~ 325 (479)
.+.+|...|.++.++.. +|++|+.+|+|++||+.... .+.++.+|...+.++.|+
T Consensus 65 ------------------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk-----~vrtLtgh~~~~~sv~f~ 121 (825)
T KOG0267|consen 65 ------------------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK-----IVRTLTGHLLNITSVDFH 121 (825)
T ss_pred ------------------eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh-----hhhhhhccccCcceeeec
Confidence 34679999999999977 89999999999999999764 477899999999999998
Q ss_pred --CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccce
Q 011711 326 --GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGV 401 (479)
Q Consensus 326 --~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 401 (479)
+.+++.|+.|..+++||.+..-+.+.+.+|...+..+.+. |.++++++.|..++|||...++....+..|...+..
T Consensus 122 P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~s 201 (825)
T KOG0267|consen 122 PYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQS 201 (825)
T ss_pred cceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccc
Confidence 8889999999999999999999999999998888777776 789999999999999999988888888878777666
Q ss_pred EEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc-eEEEEcCC
Q 011711 402 LALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG-LFFTGDGT 462 (479)
Q Consensus 402 ~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g-~l~sg~~d 462 (479)
+.+ +|.. .+++.|+.|++|++||+++++.+..... ...|.+..|+|++ .+.+|..+
T Consensus 202 le~----hp~e-~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 202 LEF----HPLE-VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccc----Cchh-hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 664 3544 4899999999999999999988877765 6789999999999 66666544
No 143
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.9e-20 Score=180.29 Aligned_cols=269 Identities=13% Similarity=0.225 Sum_probs=198.2
Q ss_pred cEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEE--EEecCCcee------EE---EeCCCEEEE-EcCCeEEEEEcCC
Q 011711 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS--VINLGAEVG------SL---ICEGPWVFV-GMPNVVKAWHIES 261 (479)
Q Consensus 194 ~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~--~~~~~~~~~------~~---~~~~~~l~~-~~~~~i~v~~~~~ 261 (479)
...+|+..++-..++.++. ..++|+.+....... .+....... .+ ....++|++ +..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3455566678777887776 467788765443211 111111111 11 124455554 5789999999987
Q ss_pred ---Cce-EEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEE
Q 011711 262 ---SAE-FSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYS 331 (479)
Q Consensus 262 ---~~~-~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~s 331 (479)
++. ..+..|...++++.|+.. +|++|+.||.|++||++..+. ..++.+....|..+.|+ ++.|++
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-----~~t~~~nSESiRDV~fsp~~~~~F~s 194 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-----KSTFRSNSESIRDVKFSPGYGNKFAS 194 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-----cccccccchhhhceeeccCCCceEEE
Confidence 222 357789999999999854 999999999999999998765 56677788899999997 889999
Q ss_pred EeCCCeEEEEECCCC-cEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEec-cccCccceEEEeee
Q 011711 332 GSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY-THNEDHGVLALGGL 407 (479)
Q Consensus 332 gs~dg~I~iwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~ 407 (479)
+...|.+++||++.. ++...+.+|.++|.++.++ ..+|++|+.|+.|+|||..+........ ....++..+.+
T Consensus 195 ~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkW--- 271 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKW--- 271 (839)
T ss_pred ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeee---
Confidence 999999999999874 5678899999999999998 5799999999999999998654332222 22334455555
Q ss_pred eCCCCCcEEEEEe--CCCeEEEeecCCCceeeeee--ccCceEEEEECCCc--eEEEEcCCCcEEEEEecc
Q 011711 408 NDPDGNPVLICSC--NDDSVHLYELPSFMERGRIF--SRREVRVIETGPDG--LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 408 ~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~--~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~ 472 (479)
-|+..+.|++++ .|-.|+|||+.......... |...++.++|.... .+.+++.||.|..-.+++
T Consensus 272 -RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 272 -RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred -ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 488777788765 57889999998766554443 57788999998743 899999999986655544
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.1e-21 Score=187.25 Aligned_cols=214 Identities=23% Similarity=0.404 Sum_probs=181.9
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 240 (479)
...+++|+.|-.+.+|.+... ..+..|.+|+.+|.++.|+++..+|++|+.+|+|++||++.++.++++
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp-~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL---------- 108 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKP-NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL---------- 108 (825)
T ss_pred ceeeccCCCceeeccccccCC-chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh----------
Confidence 357789999999999999877 455569999999999999999999999999999999999988766543
Q ss_pred eCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 241 ~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
.+|...+.++.|+|- +++.|+.|+.+++||.+... +...+.+|...
T Consensus 109 ---------------------------tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-----c~~~~~s~~~v 156 (825)
T KOG0267|consen 109 ---------------------------TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-----CSHTYKSHTRV 156 (825)
T ss_pred ---------------------------hccccCcceeeeccceEEeccccccccceehhhhccC-----ceeeecCCcce
Confidence 468888899999987 77889999999999998643 47888899999
Q ss_pred eEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEecc
Q 011711 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (479)
Q Consensus 319 i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (479)
|.++.|+ |.++++|+.|.+++|||+..|+.+.+|+.|...+.++.++ +-.+++|+.|+++++||+++.+.+.....
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 9999997 8899999999999999999999999999999999999987 45678999999999999998766555555
Q ss_pred ccCccceEEEeeeeCCCCCcEEEEEeCC
Q 011711 395 HNEDHGVLALGGLNDPDGNPVLICSCND 422 (479)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d 422 (479)
....+.+..+ +|++. .+.+|..+
T Consensus 237 ~~~~v~~~~f----n~~~~-~~~~G~q~ 259 (825)
T KOG0267|consen 237 ETDGVRSLAF----NPDGK-IVLSGEQI 259 (825)
T ss_pred ccCCceeeee----cCCce-eeecCchh
Confidence 5455544444 69988 67776544
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4.7e-20 Score=167.14 Aligned_cols=246 Identities=15% Similarity=0.212 Sum_probs=182.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceE-EEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcC
Q 011711 203 RSDKLYSGSRDGTVQLWDCHTGQSA-SVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN 281 (479)
Q Consensus 203 ~~~~l~s~s~Dg~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~ 281 (479)
-|+++|.|+.|..|.|||+.-...+ ..+.++.... .. -.....+.....+|...|.++.|+.
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~s---------------k~--~~k~~k~~~~~~gHTdavl~Ls~n~ 253 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKAS---------------KK--KKKKGKRSNSASGHTDAVLALSWNR 253 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhh---------------hh--hhhhcccccccccchHHHHHHHhcc
Confidence 3689999999999999998643211 1111110000 00 0000011123457888888998886
Q ss_pred C---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCC
Q 011711 282 E---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH 355 (479)
Q Consensus 282 ~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h 355 (479)
. .||+|+.|.+|++||+.+++. ..++..|...|.++.|+ ...|++|+.|++|.+.|.+........-.-
T Consensus 254 ~~~nVLaSgsaD~TV~lWD~~~g~p-----~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~ 328 (463)
T KOG0270|consen 254 NFRNVLASGSADKTVKLWDVDTGKP-----KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF 328 (463)
T ss_pred ccceeEEecCCCceEEEEEcCCCCc-----ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe
Confidence 6 999999999999999999864 67778899999999997 789999999999999999953322222223
Q ss_pred CCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCC-cceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC
Q 011711 356 TDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEE-GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 356 ~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 431 (479)
.+.|-.+.|+ ...++++..||+++-+|+++. +++..+..|..++..+.+. +.-..++++++.|+.|++|++.
T Consensus 329 ~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n----~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 329 DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVN----IQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEec----CCCCcceeeccccceEEEEeec
Confidence 4557777776 567888899999999999987 7788899999999888885 5555589999999999999987
Q ss_pred CCceeeeeec---cCceEEEEECCCc--eEEEEcCCCcEEEEEeccCC
Q 011711 432 SFMERGRIFS---RREVRVIETGPDG--LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 432 ~~~~~~~~~~---~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~~~ 474 (479)
.-.......+ -+...|.++.|+- .++.|+..+.++|||+.+..
T Consensus 405 ~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 405 VDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred CCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 6544333332 3447788888877 89999999999999987654
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=7.5e-20 Score=162.46 Aligned_cols=255 Identities=20% Similarity=0.273 Sum_probs=189.6
Q ss_pred EEEecccccEEEEEeCCCC--CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCc
Q 011711 186 AKLEGHKKAVSGIALPLRS--DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSA 263 (479)
Q Consensus 186 ~~~~~H~~~V~~l~~s~~~--~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~ 263 (479)
...-.|.+.|..+.-++-+ .+.++-+..|.|.|||+...- ..+. +..+.+-+.+...
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l~-------------------~~~~~~~~s~~~P 203 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NALS-------------------EPGLEVKDSEFRP 203 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhhc-------------------CccccccccccCc
Confidence 3344677888877776544 566666788999999985421 1111 0011111233344
Q ss_pred eEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCe
Q 011711 264 EFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNT 337 (479)
Q Consensus 264 ~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~ 337 (479)
.++..+|...=++++|+|- .|++|.--+.|++|...++.-. .-...+.+|+..|-.|+|+ .+.|++||.||+
T Consensus 204 l~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~--vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs 281 (440)
T KOG0302|consen 204 LFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK--VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS 281 (440)
T ss_pred eEEecccCccceeeecccccccccccCccccceEeeeeccCcee--ecCccccccccchhhhccCCccCceEEeeecCce
Confidence 5678889999999999985 7899988999999998875421 1123456799999999996 789999999999
Q ss_pred EEEEECCCC---cEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCC---cceEEeccccCccceEEEeeeeC
Q 011711 338 IRVWDLDTL---EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE---GNLEVAYTHNEDHGVLALGGLND 409 (479)
Q Consensus 338 I~iwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 409 (479)
|+|||++.+ .++.+ ++|.+.|..++|+ ..+|++|+.||+++|||+++- +++..+..|..+++++.+ +
T Consensus 282 IrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW----~ 356 (440)
T KOG0302|consen 282 IRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW----H 356 (440)
T ss_pred EEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe----c
Confidence 999999997 34444 8899999999998 348999999999999999864 456677788888877777 4
Q ss_pred CCCCcEEEEEeCCCeEEEeecCCCce--------e---------eeeec--cCceEEEEECCCc--eEEEEcCCCcEEEE
Q 011711 410 PDGNPVLICSCNDDSVHLYELPSFME--------R---------GRIFS--RREVRVIETGPDG--LFFTGDGTGMLSVW 468 (479)
Q Consensus 410 ~~~~~~l~s~~~dg~v~iwd~~~~~~--------~---------~~~~~--~~~v~~l~~s~~g--~l~sg~~dg~v~vw 468 (479)
|.....|++++.|.+|.|||+....- . .-+.| ...+..+.|++.- ++++.+.|| +.||
T Consensus 357 p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 357 PHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 77777899999999999999853211 0 11123 6679999999965 999999998 4555
Q ss_pred E
Q 011711 469 K 469 (479)
Q Consensus 469 ~ 469 (479)
.
T Consensus 436 k 436 (440)
T KOG0302|consen 436 K 436 (440)
T ss_pred E
Confidence 4
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=6.1e-20 Score=160.31 Aligned_cols=280 Identities=16% Similarity=0.262 Sum_probs=201.5
Q ss_pred EecccccEEEEEeCC-----CCCEEEEEeCCCcEEEEECCCCceE---EEEecC---CceeEEE--e----CCCEEEE-E
Q 011711 188 LEGHKKAVSGIALPL-----RSDKLYSGSRDGTVQLWDCHTGQSA---SVINLG---AEVGSLI--C----EGPWVFV-G 249 (479)
Q Consensus 188 ~~~H~~~V~~l~~s~-----~~~~l~s~s~Dg~v~vwd~~~~~~~---~~~~~~---~~~~~~~--~----~~~~l~~-~ 249 (479)
.+.|+.+|..++|++ ..+.++|++. ..+.+|+....--+ +.+... +...... . .++++++ |
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 457889999999963 2345666665 57888887654322 232222 1222222 1 2455554 5
Q ss_pred cCCeEEEEEcCCCceE-EecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc
Q 011711 250 MPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG 325 (479)
Q Consensus 250 ~~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~ 325 (479)
.-|.|++.|+.+++.. .+.+|...|+.+.+.|. ++++++.|..|++|++++... .-+..-..+|.+.|.++.|+
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C--v~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC--VAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--EEEecccccccCcEEEEEEc
Confidence 7899999999998875 57799999999999877 899999999999999998754 33344567899999999997
Q ss_pred --CCEEEEEeCCCeEEEEECCCCcE------E----------------------EEEeCCCCCcEEEEEcCCEEEEEeCC
Q 011711 326 --GKRLYSGSMDNTIRVWDLDTLEA------V----------------------MTLNGHTDAPMSLLCWDQYLLSCSLD 375 (479)
Q Consensus 326 --~~~l~sgs~dg~I~iwd~~~~~~------~----------------------~~~~~h~~~v~~~~~~~~~l~s~s~d 375 (479)
+.++++++.|.+|++|++...+. . .+-..|...|-|+.|.|+++++-+-+
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSksce 270 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCE 270 (385)
T ss_pred CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccC
Confidence 88999999999999999973211 0 02235777788888889999999999
Q ss_pred CeEEEEEcC-CCcceEEeccc----------c-CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCcee--eeeec
Q 011711 376 NTIKVWIMT-EEGNLEVAYTH----------N-EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMER--GRIFS 441 (479)
Q Consensus 376 g~i~iwd~~-~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~ 441 (479)
+.|..|..- -.+.+...... . ......-+...++|-++ +||.|.+.|.|.+||++..++. .++.+
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~ep~~~ttl~~ 349 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNNEPPKCTTLTH 349 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCCCCccCceEEe
Confidence 999999762 11111111110 0 11122233344567776 8999999999999999887663 22222
Q ss_pred ---cCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 442 ---RREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 442 ---~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
...|+..+|+.|| .|+..++||+|.-||..
T Consensus 350 s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 350 SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 6779999999999 99999999999999864
No 148
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=3.1e-17 Score=161.42 Aligned_cols=362 Identities=26% Similarity=0.397 Sum_probs=264.8
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEE-eccCC-
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCY-HWLSG- 162 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-~~~~~- 162 (479)
...+|...+..+.+.+.+..++.++.|+.+.+|+...+... .... .+... ......+. .....
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~---~~~~~---------~~~~~~~~~~~~~~~ 124 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL---IKSL---EGLHD---------SSVSKLALSSPDGNS 124 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee---EEEE---eccCC---------CceeeEEEECCCcce
Confidence 45779999999999999999999999999999986665410 0000 00000 00112222 33344
Q ss_pred eeEe-CCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeC-CCcEEEEECCCCceEEEEec-CCceeEE
Q 011711 163 NCVK-GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTGQSASVINL-GAEVGSL 239 (479)
Q Consensus 163 ~~~~-g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~-Dg~v~vwd~~~~~~~~~~~~-~~~~~~~ 239 (479)
.+.. +..|+.+.+|+..........+..|...|.+++|+|++..+++++. |+.+++|++..+..+..+.. ...+..+
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 204 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence 3444 3459999999998834788999999999999999999999999986 99999999999888877775 4445444
Q ss_pred E--eCCC-EEEE-EcCCeEEEEEcCCCceEE--ecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceee
Q 011711 240 I--CEGP-WVFV-GMPNVVKAWHIESSAEFS--LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAAL 311 (479)
Q Consensus 240 ~--~~~~-~l~~-~~~~~i~v~~~~~~~~~~--~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 311 (479)
. +++. +++. +.++.+++||...+.... ...|.... ...+.++ .+++++.|+.+++|+...... ....
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~ 279 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----LLRT 279 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----EEEE
Confidence 4 3555 4455 688999999988776654 66676664 3366655 788899999999999987643 1233
Q ss_pred ecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEe--CCCCCcEEEEEc-C-CEEEEE-eCCCeEEEEEcC
Q 011711 312 LKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN--GHTDAPMSLLCW-D-QYLLSC-SLDNTIKVWIMT 384 (479)
Q Consensus 312 ~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~v~~~~~~-~-~~l~s~-s~dg~i~iwd~~ 384 (479)
...|...+.++.++ +..+++++.|+.+.+||..+........ .|...+..+.+. + ..++.+ ..|+.+.+|+..
T Consensus 280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence 36788999999997 5778889999999999999888777776 787777777773 1 455555 688999999998
Q ss_pred CCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeecc-CceEEEEECCCc-eEEEEcCC
Q 011711 385 EEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSR-REVRVIETGPDG-LFFTGDGT 462 (479)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~v~~l~~s~~g-~l~sg~~d 462 (479)
............. ...+ .+.+ .......+..++.+.+|+............. ..+....+++++ .+++++.+
T Consensus 360 ~~~~~~~~~~~~~-~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (466)
T COG2319 360 TGKPLKTLEGHSN-VLSV----SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSD 433 (466)
T ss_pred CCceeEEecCCce-EEEE----EECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCC
Confidence 7762222211111 2222 2334 3323333788999999999998888777776 899999999999 88889999
Q ss_pred CcEEEEEecc
Q 011711 463 GMLSVWKILA 472 (479)
Q Consensus 463 g~v~vw~~~~ 472 (479)
+.+.+|+...
T Consensus 434 ~~~~~~~~~~ 443 (466)
T COG2319 434 NTIRLWDLKT 443 (466)
T ss_pred CcEEEEeccC
Confidence 9999999876
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=5.7e-20 Score=160.52 Aligned_cols=235 Identities=17% Similarity=0.218 Sum_probs=176.2
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~-~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~ 239 (479)
...++.|+.-|.|+|.|+.++ +....+.+|..+|..|.+.|+. ++++++|.|.+||+||+++..++..+.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~-~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG-------- 175 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSG-QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG-------- 175 (385)
T ss_pred CeeEEeecceeEEEEEecchh-hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec--------
Confidence 347888889999999999998 8899999999999999999875 789999999999999999999988774
Q ss_pred EeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCC-------------
Q 011711 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQN------------- 304 (479)
Q Consensus 240 ~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~------------- 304 (479)
-..+|.+.|.++.|+.+ .|++++.|.++++|++...+..
T Consensus 176 --------------------------G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~ 229 (385)
T KOG1034|consen 176 --------------------------GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNK 229 (385)
T ss_pred --------------------------ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCC
Confidence 24579999999999977 9999999999999998842210
Q ss_pred ----------cccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECC-CCcE-------------EEEEeCCCCCcE
Q 011711 305 ----------PFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLD-TLEA-------------VMTLNGHTDAPM 360 (479)
Q Consensus 305 ----------~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~-~~~~-------------~~~~~~h~~~v~ 360 (479)
++....+-..|...|.|+.|-|+++++-+-++.|..|-.- -.+. +.++......+.
T Consensus 230 t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW 309 (385)
T KOG1034|consen 230 TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW 309 (385)
T ss_pred ccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE
Confidence 0111123456888888888889999999999999999872 1221 223333333444
Q ss_pred EEEEc----CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC
Q 011711 361 SLLCW----DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 361 ~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 431 (479)
-+.+. .++|+.|...|.|.+||++..++...............-...++.|+. +|+..+.|++|.-||..
T Consensus 310 firf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 310 FIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence 44433 689999999999999999987763222111111122222233468888 77778899999999854
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2e-20 Score=175.19 Aligned_cols=291 Identities=17% Similarity=0.150 Sum_probs=204.6
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCC--CCCCCcc-ccccCcCCCCCeeeeeecCCCeEEE-e--
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRT--VPNKSSL-DCSTGSDDSGSKRTLERTTPKNVCY-H-- 158 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~c~-~-- 158 (479)
.+.||++.|.++...|.|.+|||||+||++|||-+.+...- .+-.... .+.+... +...++.......+.+ .
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~--~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPL--SDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCC--CCceeEEEEecCceEEeCcc
Confidence 44999999999999999999999999999999977764321 0000000 1111111 1111221111111111 0
Q ss_pred --------ccCCeeEeC----CCCCeEEEeecCCC---ceeeEEEecccccEEEEEeCCCCCEEEEEeCC---CcEEEEE
Q 011711 159 --------WLSGNCVKG----DECRFWHSWFCGEG---FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GTVQLWD 220 (479)
Q Consensus 159 --------~~~~~~~~g----~~d~~i~vw~~~~~---~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D---g~v~vwd 220 (479)
+....+.++ ..+..+..|.-... ..-+...-.|...|..+.|+..|.||+|...+ ..|.|++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 111122222 34667778877522 12234555689999999999999999998764 5789999
Q ss_pred CCCCceEEEEe-cCCceeEEE--eCCCEEEEEcCCeEEEEEcCCCceE-EecCCCccEEEEEEcC--CEEEEEeCCCcEE
Q 011711 221 CHTGQSASVIN-LGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVAN--EMLFAGAQDGNIL 294 (479)
Q Consensus 221 ~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~~~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~--~~l~~g~~dg~i~ 294 (479)
+.......-+. ....+.++. +...+++++....|++||+..+... .+......|..++.++ +.|+.|+.|+.+.
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~ 632 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMC 632 (733)
T ss_pred cccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeE
Confidence 98776655552 334444444 4677999999999999999886654 3445566788888887 5999999999999
Q ss_pred EEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECC------CC---cEEEEEeCCCCC----c
Q 011711 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD------TL---EAVMTLNGHTDA----P 359 (479)
Q Consensus 295 iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~------~~---~~~~~~~~h~~~----v 359 (479)
.+|+.-+. ++.+.+..|...+++++++ -.++++|+.||++.|+.-. .. -+++.+.+|... |
T Consensus 633 WfDldlss----kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gV 708 (733)
T KOG0650|consen 633 WFDLDLSS----KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGV 708 (733)
T ss_pred EEEcccCc----chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccce
Confidence 99998764 3578889999999999998 4579999999999998432 21 246777888765 7
Q ss_pred EEEEEc--CCEEEEEeCCCeEEEE
Q 011711 360 MSLLCW--DQYLLSCSLDNTIKVW 381 (479)
Q Consensus 360 ~~~~~~--~~~l~s~s~dg~i~iw 381 (479)
....|+ ..+|++++.||+|++|
T Consensus 709 Ld~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 709 LDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeecccCCCceEEecCCCceEEee
Confidence 777787 5799999999999998
No 151
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.84 E-value=7.7e-20 Score=168.47 Aligned_cols=215 Identities=18% Similarity=0.251 Sum_probs=162.2
Q ss_pred CCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCC
Q 011711 260 ESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD 335 (479)
Q Consensus 260 ~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~d 335 (479)
-...++.+.+|...|.++++.+. .|++|+.|..|++||+..-.................|.++.|+ ++.|++.+..
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 33445678889999999999988 9999999999999998764332111112222344578899997 8888888888
Q ss_pred CeEEEEECCCCcEEEEE------------eCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceEEeccc--cCc
Q 011711 336 NTIRVWDLDTLEAVMTL------------NGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH--NED 398 (479)
Q Consensus 336 g~I~iwd~~~~~~~~~~------------~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~ 398 (479)
...+++|-...+.+... ++|...+++-.|. .+.+++++.||++|+||+.+.+.......+ ...
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 89999997655443332 4787788888887 368999999999999999876543333322 223
Q ss_pred cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee----c--cCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 399 HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF----S--RREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----~--~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
..+....+.|+++|+ +||+|+.||.|.+|+..+......+. | ...|+++.||+|| +|++-+.|+++++||+.
T Consensus 316 ~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred cccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 445566778899999 79999999999999986544433332 3 3479999999999 99999999999999998
Q ss_pred cCCC
Q 011711 472 AKPN 475 (479)
Q Consensus 472 ~~~~ 475 (479)
+-+.
T Consensus 395 q~kk 398 (641)
T KOG0772|consen 395 QFKK 398 (641)
T ss_pred cccc
Confidence 7554
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=2.2e-19 Score=169.44 Aligned_cols=312 Identities=16% Similarity=0.235 Sum_probs=191.6
Q ss_pred CCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEecc--CCeeEeCCCCCeEEE
Q 011711 98 CPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWL--SGNCVKGDECRFWHS 175 (479)
Q Consensus 98 ~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~~~g~~d~~i~v 175 (479)
.+.+...||-+-+||.|.+.|...-.+.... . .......|.+.++=..|. ...+++.+.|.++++
T Consensus 60 ~~n~eHiLavadE~G~i~l~dt~~~~fr~ee-~------------~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 60 APNKEHILAVADEDGGIILFDTKSIVFRLEE-R------------QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRP 126 (720)
T ss_pred CCCccceEEEecCCCceeeecchhhhcchhh-h------------hhcccccccceeEeeccCCCceeEEEccCCceeee
Confidence 3556677999999999999987665442100 0 001111222233333443 448899999999999
Q ss_pred eecCCCceeeEE--EecccccEEEEEeCCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCC
Q 011711 176 WFCGEGFTMLAK--LEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPN 252 (479)
Q Consensus 176 w~~~~~~~~~~~--~~~H~~~V~~l~~s~~~-~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (479)
||++++ +++.. +.||+..|.++||.+.. ..|++|+.||.|.|||+.-...-........+....-.++.=..-...
T Consensus 127 Wdvk~s-~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 127 WDVKTS-RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeccc-eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999987 66655 89999999999998865 578999999999999987544111000000000000000000000000
Q ss_pred eEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeC-CCcEEEEEccCCCCCc-ccceee--ecCC---CCCeEEEEE
Q 011711 253 VVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQ-DGNILVWKGIPNTQNP-FQLAAL--LKGH---TRPVTCLAV 324 (479)
Q Consensus 253 ~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~-dg~i~iwd~~~~~~~~-~~~~~~--~~~h---~~~i~~l~~ 324 (479)
.++-|-.. .......|+.+.|..+ .|++++. |+.|++||++.....- .++... +..| .-.++++..
T Consensus 206 r~~k~kA~------s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 206 RIRKWKAA------SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred cccccccc------cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 00001100 0111233666666655 8888777 9999999998764311 111221 2222 335777777
Q ss_pred c--CCEEEEEeCCCeEEEEECCCCc--EEEEEeCCCCC---c-EEEEEcCCEEEEEeCCCeEEEEEcCCCcc-eEEeccc
Q 011711 325 G--GKRLYSGSMDNTIRVWDLDTLE--AVMTLNGHTDA---P-MSLLCWDQYLLSCSLDNTIKVWIMTEEGN-LEVAYTH 395 (479)
Q Consensus 325 ~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~h~~~---v-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~ 395 (479)
+ |.+|++.+.|+.|++||+.+.. ++..+.++... + ..+.+++.++++|+.|...++|.+.+.+. ...+.+|
T Consensus 280 DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Gh 359 (720)
T KOG0321|consen 280 DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGH 359 (720)
T ss_pred cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCc
Confidence 6 8998888889999999998743 34444444332 2 23445589999999999999999987654 3444556
Q ss_pred cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCC
Q 011711 396 NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSF 433 (479)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 433 (479)
..++..+.+. .++... +++++.|..++||++..+
T Consensus 360 t~eVt~V~w~--pS~~t~--v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 360 TREVTTVRWL--PSATTP--VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ceEEEEEeec--cccCCC--ceeeccCcceEEEeccCc
Confidence 6555554443 455665 455599999999999654
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=4.8e-19 Score=162.50 Aligned_cols=256 Identities=15% Similarity=0.181 Sum_probs=191.4
Q ss_pred eCCCcEEEEECCCCceEEEEecCCc---eeEEEeC-CC-EEEE--EcCCeEEEEEcCCC--ceEEe-cCCCccEEEEEEc
Q 011711 211 SRDGTVQLWDCHTGQSASVINLGAE---VGSLICE-GP-WVFV--GMPNVVKAWHIESS--AEFSL-DGPVGEVYSMVVA 280 (479)
Q Consensus 211 s~Dg~v~vwd~~~~~~~~~~~~~~~---~~~~~~~-~~-~l~~--~~~~~i~v~~~~~~--~~~~~-~~~~~~v~~~~~~ 280 (479)
+....+++||....+....+....+ +.++.+. .. ++++ +.|..+++|.-... +.... ......-.|++..
T Consensus 9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~ 88 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACA 88 (673)
T ss_pred ccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhh
Confidence 3334799999987766555543322 3333332 22 3333 36778888876554 11111 1111122333333
Q ss_pred CC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCC
Q 011711 281 NE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT 356 (479)
Q Consensus 281 ~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 356 (479)
.. ++++|+..+.|+|||++.. .+.+.+++|...|+++.++ ..+|++++..|.|.|..+.++..-.+|....
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~k-----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAK-----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred hcceeeeccCcCceeeehhhHHH-----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence 33 8999999999999999853 3577789999999999997 8899999999999999999998888888665
Q ss_pred CCcE-EEEEc---CCEEEEEeCCCeEEEEEcCCCcceEEe-ccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC
Q 011711 357 DAPM-SLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVA-YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 357 ~~v~-~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 431 (479)
+.+. -+.++ -.+|.+++.+|.|.+||+....++... ..|..+...++++ |..+.+|++.+.|..|.+||..
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfs----psne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFS----PSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceec----CCccceEEEecccceEEEeecc
Confidence 6655 44555 346778999999999999877655443 3466666666664 8888899999999999999999
Q ss_pred CCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCCC
Q 011711 432 SFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 432 ~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~ 475 (479)
.......+....+.+.++|+++| +|++|...|.|..||+...+.
T Consensus 240 s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 240 SQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred cccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 88888888889999999999999 999999999999999987654
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7e-19 Score=160.22 Aligned_cols=280 Identities=17% Similarity=0.184 Sum_probs=208.8
Q ss_pred CCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCC-eeEeCCC
Q 011711 91 KSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG-NCVKGDE 169 (479)
Q Consensus 91 ~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~~ 169 (479)
..|+++.|.|.-..|.+++.||+++|+.+++.... ... .-.+.+-+....|+++.+. .+++++.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~lq-------------S~~l~~fPi~~a~f~p~G~~~i~~s~r 278 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--KLQ-------------SIHLEKFPIQKAEFAPNGHSVIFTSGR 278 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccCh--hhe-------------eeeeccCccceeeecCCCceEEEeccc
Confidence 47899999999999999999999999976664321 111 1223444556888999888 8899999
Q ss_pred CCeEEEeecCCC-ceeeEEEeccc-ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEE
Q 011711 170 CRFWHSWFCGEG-FTMLAKLEGHK-KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247 (479)
Q Consensus 170 d~~i~vw~~~~~-~~~~~~~~~H~-~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (479)
....++||+.+. ...+..+.|+. ..+.....++++++|+..+..|.|.+-...+++.+..++.
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki--------------- 343 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--------------- 343 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee---------------
Confidence 999999999876 33455556665 4577888899999999999999999999999988877763
Q ss_pred EEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCe--EEEE
Q 011711 248 VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV--TCLA 323 (479)
Q Consensus 248 ~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i--~~l~ 323 (479)
.+.|..+.|+.+ .|++.+.+|.|++||++.... +..+.. .+.| ++++
T Consensus 344 -----------------------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~-----~~rf~D-~G~v~gts~~ 394 (514)
T KOG2055|consen 344 -----------------------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC-----LHRFVD-DGSVHGTSLC 394 (514)
T ss_pred -----------------------ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce-----EEEEee-cCccceeeee
Confidence 455667777665 788888899999999988642 333332 2222 3344
Q ss_pred --EcCCEEEEEeCCCeEEEEECCC------CcEEEEEeCCCCCcEEEEEc--CCEEEEEeC--CCeEEEEEcCCCcceEE
Q 011711 324 --VGGKRLYSGSMDNTIRVWDLDT------LEAVMTLNGHTDAPMSLLCW--DQYLLSCSL--DNTIKVWIMTEEGNLEV 391 (479)
Q Consensus 324 --~~~~~l~sgs~dg~I~iwd~~~------~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~--dg~i~iwd~~~~~~~~~ 391 (479)
.++.+|++|+..|.|.|||.++ .+++.++..-...|.++.|+ .+.|+.+|. +..+++--+.+......
T Consensus 395 ~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsN 474 (514)
T KOG2055|consen 395 ISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSN 474 (514)
T ss_pred ecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeecc
Confidence 4599999999999999999764 56777777777889999998 566666654 67888887776554444
Q ss_pred eccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC
Q 011711 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 431 (479)
+...+..+. ...++.|+|.+. +++.|..+|.|.+|.+.
T Consensus 475 fP~~n~~vg-~vtc~aFSP~sG-~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 475 FPTSNTKVG-HVTCMAFSPNSG-YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCCCCccc-ceEEEEecCCCc-eEEeecCCCceeeEeec
Confidence 444333322 233445579888 89999999999999874
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=1.4e-18 Score=158.06 Aligned_cols=251 Identities=18% Similarity=0.237 Sum_probs=190.4
Q ss_pred eeeEEEecccccEEEEEeCCCCC--EEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcC
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSD--KLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIE 260 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~--~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~ 260 (479)
......+-|...|++++|+|..+ ++|+|+.-|.|-+||+.+.+...
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-------------------------------- 224 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-------------------------------- 224 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc--------------------------------
Confidence 55667788999999999999764 78888999999999996332210
Q ss_pred CCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCC
Q 011711 261 SSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD 335 (479)
Q Consensus 261 ~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~d 335 (479)
...+.+..|..+|.++.|+|. .+++.+.||+|++-|+.... ++.+..+......+.++.++ ...++.+..=
T Consensus 225 -d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i---~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~ 300 (498)
T KOG4328|consen 225 -DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI---SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNV 300 (498)
T ss_pred -CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchh---hHHHhhcCccceeeeeccccCCCccEEEeecc
Confidence 112345578899999999976 99999999999999998875 33444444445556667775 5567777777
Q ss_pred CeEEEEECCCCcE-EEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceE----EeccccCccceEEEeee
Q 011711 336 NTIRVWDLDTLEA-VMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLE----VAYTHNEDHGVLALGGL 407 (479)
Q Consensus 336 g~I~iwd~~~~~~-~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~ 407 (479)
|...+||++++.. ...+..|...|.+++++ ..+|++++.|++.+|||++.-.... ....|...+.. ..
T Consensus 301 G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~s----Ay 376 (498)
T KOG4328|consen 301 GNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNS----AY 376 (498)
T ss_pred cceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeee----eE
Confidence 7999999998665 67778888899999998 5789999999999999998654332 23344444443 44
Q ss_pred eCCCCCcEEEEEeCCCeEEEeec----CCCceeeeeeccC------ceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 408 NDPDGNPVLICSCNDDSVHLYEL----PSFMERGRIFSRR------EVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 408 ~~~~~~~~l~s~~~dg~v~iwd~----~~~~~~~~~~~~~------~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
++|.+.. |++.+.|..|+|||. ...+....+.|.. ......|.|+. ++++|-.-..|-|+|-+.++
T Consensus 377 FSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 377 FSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred EcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 5698884 888889999999998 4556677777622 25567999988 99999998889998866554
No 156
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=5.8e-19 Score=149.80 Aligned_cols=280 Identities=19% Similarity=0.275 Sum_probs=194.3
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-cCC-ceeEEE--eCCCEEEEEcCCeEEEEE
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGA-EVGSLI--CEGPWVFVGMPNVVKAWH 258 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~-~~~-~~~~~~--~~~~~l~~~~~~~i~v~~ 258 (479)
.+...+++|.+.|+++.|..+++ |.+|..-|.|++|++++......+. .+. .+..+. +++.+..-+.|..+.+|+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWT 83 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEE
Confidence 45667889999999999977665 9999999999999999988777776 222 233333 356677778999999999
Q ss_pred cCCCceEEecCCCccEEEEEEcCCEEEEEeCCC-cEEEEEccC---------CCCCcccc-eeeecCCCCCeEEEEEc--
Q 011711 259 IESSAEFSLDGPVGEVYSMVVANEMLFAGAQDG-NILVWKGIP---------NTQNPFQL-AALLKGHTRPVTCLAVG-- 325 (479)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg-~i~iwd~~~---------~~~~~~~~-~~~~~~h~~~i~~l~~~-- 325 (479)
+.....+... .-.++++.|.+.-+...+... ....++-+. +...+... .....+..+.+.|..+.
T Consensus 84 ia~s~~i~i~--Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 84 IAYSAFISIH--SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred ccCcceEEEe--eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 9886655432 234444444433333222221 111221111 11000000 00112345677787763
Q ss_pred -C--CEEEEEeCCCeEEEEECCCCcE----------EEEEeCCCCCcEEEEEcC--CEEEEEeCCCeEEEEEcCCCc-ce
Q 011711 326 -G--KRLYSGSMDNTIRVWDLDTLEA----------VMTLNGHTDAPMSLLCWD--QYLLSCSLDNTIKVWIMTEEG-NL 389 (479)
Q Consensus 326 -~--~~l~sgs~dg~I~iwd~~~~~~----------~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~i~iwd~~~~~-~~ 389 (479)
+ -++++|.++|.+.+||+.++.. +.....|..+|+++.+.. +.=++|+.+..+..|++.... .+
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 3 3477889999999999999733 344457889999999882 445677888889999887541 11
Q ss_pred ---EEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCc
Q 011711 390 ---EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGM 464 (479)
Q Consensus 390 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~ 464 (479)
......+..+..+.+. ||++ ++++++.|+.|++|+.+++.++..+. |...|++++|+|+. ++++++.|+.
T Consensus 242 q~~~e~~lknpGv~gvrIR----pD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 242 QIRKEITLKNPGVSGVRIR----PDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred cccceEEecCCCccceEEc----cCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 1222334445556664 8988 99999999999999999999998886 68899999999996 9999999999
Q ss_pred EEEEEe
Q 011711 465 LSVWKI 470 (479)
Q Consensus 465 v~vw~~ 470 (479)
|.+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
No 157
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.2e-18 Score=155.77 Aligned_cols=230 Identities=18% Similarity=0.212 Sum_probs=174.0
Q ss_pred eEEEecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCc
Q 011711 185 LAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSA 263 (479)
Q Consensus 185 ~~~~~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~ 263 (479)
.-.+.||+++|.+++|+| +...+||||.|.+|+||++..+.....+. ..
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------------------------ep 123 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------------------------EP 123 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------------------------cc
Confidence 334679999999999988 45679999999999999998765443332 12
Q ss_pred eEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeE
Q 011711 264 EFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTI 338 (479)
Q Consensus 264 ~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I 338 (479)
...+.+|...|--+.|+|. .|++++.|..|.+|++.++.. ...+. |.+.|.++.|+ |.++++.+.|..|
T Consensus 124 vv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea-----li~l~-hpd~i~S~sfn~dGs~l~TtckDKkv 197 (472)
T KOG0303|consen 124 VVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA-----LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKV 197 (472)
T ss_pred eEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce-----eeecC-CCCeEEEEEeccCCceeeeeccccee
Confidence 3457789999999999987 899999999999999999864 34445 99999999997 9999999999999
Q ss_pred EEEECCCCcEEEEEeCCCCCc-EEEEEc--CCEEEEEe----CCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCC
Q 011711 339 RVWDLDTLEAVMTLNGHTDAP-MSLLCW--DQYLLSCS----LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPD 411 (479)
Q Consensus 339 ~iwd~~~~~~~~~~~~h~~~v-~~~~~~--~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (479)
+|||.++++.+..-.+|.+.- ....|. +. +++.+ .+.++-+||..+-+....+...... .-.+..+++++
T Consensus 198 Rv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS--nGvl~PFyD~d 274 (472)
T KOG0303|consen 198 RVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS--NGVLLPFYDPD 274 (472)
T ss_pred EEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccC--CceEEeeecCC
Confidence 999999999999998888753 333333 45 54443 3678999998766544333333322 22345567899
Q ss_pred CCcEEEEEeCCCeEEEeecCCCceeee----eeccCceEEEEECCC
Q 011711 412 GNPVLICSCNDDSVHLYELPSFMERGR----IFSRREVRVIETGPD 453 (479)
Q Consensus 412 ~~~~l~s~~~dg~v~iwd~~~~~~~~~----~~~~~~v~~l~~s~~ 453 (479)
.+.+.++|-.|+.|+.|.+........ +....+-+.+.+.|.
T Consensus 275 t~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 275 TSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred CCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 887788888999999999987653322 233566666777664
No 158
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=4.4e-18 Score=169.09 Aligned_cols=286 Identities=18% Similarity=0.263 Sum_probs=196.7
Q ss_pred CCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEeccc---ccEEEEEeC--CCCCEEEEEeCCCcEEEEECCCC-
Q 011711 151 TPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHK---KAVSGIALP--LRSDKLYSGSRDGTVQLWDCHTG- 224 (479)
Q Consensus 151 ~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~---~~V~~l~~s--~~~~~l~s~s~Dg~v~vwd~~~~- 224 (479)
.+..+-+++....++++++.-.|+|||.+.+ +.+..|..+. ..|+++.+- .|..++++|+.||.||||+-...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~-~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKG-RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccC-ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 4667888999999999998999999999988 6666666543 579999983 35678999999999999974322
Q ss_pred -ceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcC--CEEEEEeCCCcEEEEEccCC
Q 011711 225 -QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN--EMLFAGAQDGNILVWKGIPN 301 (479)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~g~~dg~i~iwd~~~~ 301 (479)
+..... .-|..-++...... ..+ .-+.|.. .+|++++.-..|+|||....
T Consensus 1145 ~~~~eLV------------------------Taw~~Ls~~~~~~r-~~~--~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E 1197 (1387)
T KOG1517|consen 1145 WKKPELV------------------------TAWSSLSDQLPGAR-GTG--LVVDWQQQSGHLLVTGDVRSIRIWDAHKE 1197 (1387)
T ss_pred cCCceeE------------------------EeeccccccCccCC-CCC--eeeehhhhCCeEEecCCeeEEEEEecccc
Confidence 111111 11211111111111 111 2233433 37777777889999998876
Q ss_pred CCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCc---EEEEEeCCCCC--cEEEEEc--C-CEEE
Q 011711 302 TQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLE---AVMTLNGHTDA--PMSLLCW--D-QYLL 370 (479)
Q Consensus 302 ~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~h~~~--v~~~~~~--~-~~l~ 370 (479)
.. ......+....|+++.-+ |+.+++|..||.|++||.+... .+...+.|+.. |+.+.+. | ..|+
T Consensus 1198 ~~----~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1198 QV----VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred ee----EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCccee
Confidence 42 222333456678888775 8999999999999999998743 46777888887 8887776 3 3699
Q ss_pred EEeCCCeEEEEEcCCCcceEE--ecccc--C-ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-----
Q 011711 371 SCSLDNTIKVWIMTEEGNLEV--AYTHN--E-DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF----- 440 (479)
Q Consensus 371 s~s~dg~i~iwd~~~~~~~~~--~~~~~--~-~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----- 440 (479)
+|+.||.|++||++....... ...+- + ..+.+.+ ++... ++++|+. +.|+||++...+......
T Consensus 1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V----H~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTV----HEHAP-IIASGSA-QLIKIYSLSGEQLNIIKYNPGFM 1347 (1387)
T ss_pred eeccCCeEEEEecccCcccccceeeeccccCccceeeee----ccCCC-eeeecCc-ceEEEEecChhhhcccccCcccc
Confidence 999999999999987522111 11111 1 1233333 34444 9999987 999999986533221111
Q ss_pred --ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 441 --SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 441 --~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
..+.+.+++|+|.. ++++|+.|..|.||...+..
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 15678999999999 99999999999999876643
No 159
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=1.9e-18 Score=148.81 Aligned_cols=205 Identities=16% Similarity=0.188 Sum_probs=161.9
Q ss_pred cCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCc--c-----cc---eeeecCCCCCeEEEEE---cCCEEEE
Q 011711 268 DGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNP--F-----QL---AALLKGHTRPVTCLAV---GGKRLYS 331 (479)
Q Consensus 268 ~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~--~-----~~---~~~~~~h~~~i~~l~~---~~~~l~s 331 (479)
..|.+.|+++.+.+. ++++|+.||.|.+||+....... . .. .....+|.-.|.++.| +...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 357899999998865 99999999999999997754211 0 00 1123467888999888 4788999
Q ss_pred EeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc-----CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEee
Q 011711 332 GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-----DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGG 406 (479)
Q Consensus 332 gs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 406 (479)
++.|.++++||..+.+....|+- ++.|.+-+++ ..++++|..|-+|++-|+.++.....+.+|...+..+.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~--- 195 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE--- 195 (397)
T ss_pred ccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE---
Confidence 99999999999999888777762 3344443333 45788888899999999999999999999988765444
Q ss_pred eeCCCCCcEEEEEeCCCeEEEeecCCC-ceee---------------eeeccCceEEEEECCCc-eEEEEcCCCcEEEEE
Q 011711 407 LNDPDGNPVLICSCNDDSVHLYELPSF-MERG---------------RIFSRREVRVIETGPDG-LFFTGDGTGMLSVWK 469 (479)
Q Consensus 407 ~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~---------------~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~ 469 (479)
|+|..+.+|++|+.||.|++||++.. .+.. ...|.+.|..++|+.++ ++++++.|..+++|+
T Consensus 196 -Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 196 -WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred -eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 46999999999999999999999764 1111 12246779999999999 999999999999999
Q ss_pred eccCCCCC
Q 011711 470 ILAKPNAE 477 (479)
Q Consensus 470 ~~~~~~~~ 477 (479)
..++.+.+
T Consensus 275 ~~~G~ntl 282 (397)
T KOG4283|consen 275 MESGRNTL 282 (397)
T ss_pred cccCcccc
Confidence 99987754
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3.9e-19 Score=178.69 Aligned_cols=229 Identities=21% Similarity=0.279 Sum_probs=181.5
Q ss_pred CeeEeCCCCCeEEEeecCC-----CceeeEEEecccccEEEEEeCCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCc
Q 011711 162 GNCVKGDECRFWHSWFCGE-----GFTMLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAE 235 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~-----~~~~~~~~~~H~~~V~~l~~s~~~~-~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~ 235 (479)
+.++.|.+||.|.+||... ....+.++..|++.|..+.|++.+. .||+|+.||.|.|||+..-+.-....
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---- 156 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---- 156 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC----
Confidence 4588889999999999965 2466788899999999999999766 99999999999999998644322211
Q ss_pred eeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeee
Q 011711 236 VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (479)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 312 (479)
.......|.+++|+.. .|++++.+|.+.|||++.++. +..+
T Consensus 157 -------------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-----ii~l 200 (1049)
T KOG0307|consen 157 -------------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-----IIKL 200 (1049)
T ss_pred -------------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-----cccc
Confidence 1235678999999977 899999999999999998743 3333
Q ss_pred cCCC--CCeEEEEEc---CCEEEEEeCCC---eEEEEECCC-CcEEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEE
Q 011711 313 KGHT--RPVTCLAVG---GKRLYSGSMDN---TIRVWDLDT-LEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKV 380 (479)
Q Consensus 313 ~~h~--~~i~~l~~~---~~~l~sgs~dg---~I~iwd~~~-~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~i 380 (479)
..+. ..+..+.|+ ...+++++.|. .|.+||+|. ..+++.+.+|...|.++.|. ..+|++++.|+.|.+
T Consensus 201 s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~ 280 (1049)
T KOG0307|consen 201 SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIIC 280 (1049)
T ss_pred ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeE
Confidence 4343 346788997 55677777654 699999986 45678889999999999998 479999999999999
Q ss_pred EEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc
Q 011711 381 WIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM 434 (479)
Q Consensus 381 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 434 (479)
|+.++++.+..+..... ..+...|.|....++++++-||.|.||.+.+..
T Consensus 281 wN~~tgEvl~~~p~~~n----W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 281 WNPNTGEVLGELPAQGN----WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCceEeeecCCCCc----ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999887776666433 345555568877799999999999999987654
No 161
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.6e-17 Score=139.50 Aligned_cols=247 Identities=15% Similarity=0.191 Sum_probs=180.0
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCc
Q 011711 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVG 272 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~ 272 (479)
..|.+-+++|.+++|+.|..+|+|-+..+++-..-...+ ......+..++|.+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~---------------------------~gk~~iv~eqahdg 63 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEP---------------------------PGKLKIVPEQAHDG 63 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCC---------------------------CCCcceeeccccCC
Confidence 456667889999999999999999999986532111111 00112234578999
Q ss_pred cEEEEEEcCCEEEEEeCCCcEEEEEccCCCCC-ccccee--eecCC-----CCCeEEEEEc--CCEEEEEeCCCeEEEEE
Q 011711 273 EVYSMVVANEMLFAGAQDGNILVWKGIPNTQN-PFQLAA--LLKGH-----TRPVTCLAVG--GKRLYSGSMDNTIRVWD 342 (479)
Q Consensus 273 ~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~--~~~~h-----~~~i~~l~~~--~~~l~sgs~dg~I~iwd 342 (479)
+++.++|..++|++|+. |.|+-|..+..... ..+... ....| -..|+++-.+ .+-++.++.|+.++.||
T Consensus 64 piy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~d 142 (325)
T KOG0649|consen 64 PIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVD 142 (325)
T ss_pred CeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEE
Confidence 99999999888888875 99999987654320 011110 01112 2457777775 56667777999999999
Q ss_pred CCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCc------cceEEEeeeeCCCCCc
Q 011711 343 LDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNED------HGVLALGGLNDPDGNP 414 (479)
Q Consensus 343 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 414 (479)
+++|+..+++.+|++.+.++.-- ...+++|++||++|+||.++.+.+..+...+.+ ......++. -+..
T Consensus 143 lE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~ed- 219 (325)
T KOG0649|consen 143 LEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNED- 219 (325)
T ss_pred ecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCc-
Confidence 99999999999999999998874 678999999999999999999887776553322 122222221 2333
Q ss_pred EEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCceEEEEcCCCcEEEEEecc
Q 011711 415 VLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDGLFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 415 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~ 472 (479)
.+++|+ ...+.+|++++.+....+.-...+..+.|..| .+++++....|.-|.+.-
T Consensus 220 WlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 220 WLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eEEecC-CCceeEEeccCCCceEEEecccceeEeeeecc-eEEEeccccceeeeeecc
Confidence 788775 56799999999999999988999999999877 677777777788887653
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.6e-18 Score=151.01 Aligned_cols=263 Identities=15% Similarity=0.182 Sum_probs=187.2
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCC--CCCEEEEEeCCCcEEEEECCCCceEEEEecC----Cc
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL--RSDKLYSGSRDGTVQLWDCHTGQSASVINLG----AE 235 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~--~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~----~~ 235 (479)
..++++-..+.|++||..++ +.+..+++|...+..+.|.. ....+.+|+.||+|++||+++......+... .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg-~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccch-hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 56888889999999999997 88999999999999999965 5678999999999999999987766655532 23
Q ss_pred eeEEEe--CCCEEEEE-----cCCeEEEEEcCCCce-E--EecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCC
Q 011711 236 VGSLIC--EGPWVFVG-----MPNVVKAWHIESSAE-F--SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNT 302 (479)
Q Consensus 236 ~~~~~~--~~~~l~~~-----~~~~i~v~~~~~~~~-~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~ 302 (479)
..++.. .++++++| .+-.+.+||++..+. + -...|...|+++.|+|+ +|++|+.||.|.+||+....
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 444443 56677776 356899999998877 3 35689999999999876 99999999999999997764
Q ss_pred CCcccceeeecCCCCCeEEEEEc-C--CEEEEEeCCCeEEEEECCCCcEEEEEeCCC------------CCcEEEEEc--
Q 011711 303 QNPFQLAALLKGHTRPVTCLAVG-G--KRLYSGSMDNTIRVWDLDTLEAVMTLNGHT------------DAPMSLLCW-- 365 (479)
Q Consensus 303 ~~~~~~~~~~~~h~~~i~~l~~~-~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~------------~~v~~~~~~-- 365 (479)
. -..+...-.|...|.++.|. . +.+.+-+...+..+|+++.+.+...+.... ..+......
T Consensus 200 E--eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~ 277 (376)
T KOG1188|consen 200 E--EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGD 277 (376)
T ss_pred c--hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCC
Confidence 3 23344455688889999997 2 369999999999999999887655554221 112222211
Q ss_pred CCEEEEEeC-CCeEEEEEcC---CCc---ceEEecc-ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 366 DQYLLSCSL-DNTIKVWIMT---EEG---NLEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 366 ~~~l~s~s~-dg~i~iwd~~---~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
....+.++. -|...++-+. ++. .+..+.+ +..-+..+. +...+. ++.+|+.||.+.+|..+.
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~----~~~~~~-~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDIL----FDVKND-VLYTGGEDGLLQAWKVED 347 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHh----hhcccc-eeeccCCCceEEEEecCC
Confidence 234444443 5555555443 222 2222333 222222222 233444 899999999999998643
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=7.2e-18 Score=147.14 Aligned_cols=274 Identities=20% Similarity=0.276 Sum_probs=194.3
Q ss_pred CCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCCC
Q 011711 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECR 171 (479)
Q Consensus 92 ~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d~ 171 (479)
-..+..|||||..+.+-+.|...++|++..... +.... .. ..+..+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dly----------s~~~~-~~--~~~~~~--------------------- 96 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLY----------SKKAD-GP--LNFSKH--------------------- 96 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhc----------ccCCC-Cc--cccccc---------------------
Confidence 346889999999999999999999997554332 11100 00 000000
Q ss_pred eEEEeecCCCceeeEEEecccccEEEEEe-------CCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC--------ce
Q 011711 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIAL-------PLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA--------EV 236 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H~~~V~~l~~-------s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~--------~~ 236 (479)
..++.. ....|.+.+| -|+..++++.+.|.-|++||.-+|+....+..-. ..
T Consensus 97 -----------~~~r~~--eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhs 163 (406)
T KOG2919|consen 97 -----------LSYRYQ--EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHS 163 (406)
T ss_pred -----------eeEEec--cCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhee
Confidence 000000 1123344444 3778899999999999999999999887775332 23
Q ss_pred eEEEeCCCEEEEEcCCeEEEEEc-CCCceE---E-----ecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCC
Q 011711 237 GSLICEGPWVFVGMPNVVKAWHI-ESSAEF---S-----LDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQN 304 (479)
Q Consensus 237 ~~~~~~~~~l~~~~~~~i~v~~~-~~~~~~---~-----~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~ 304 (479)
.++.++|..|++|.+..|+++|+ +.+... . ..+..+.+.+++++|- .+++|+....+-||.-...
T Consensus 164 L~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~--- 240 (406)
T KOG2919|consen 164 LQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR--- 240 (406)
T ss_pred EEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC---
Confidence 44556999999999999999999 444321 1 2344677889999876 8999999999888876554
Q ss_pred cccceeeecCCCCCeEEEEEc--CCEEEEEeC-CCeEEEEECCC-CcEEEEEeCCCC-CcEEEEEc----CCEEEEEeCC
Q 011711 305 PFQLAALLKGHTRPVTCLAVG--GKRLYSGSM-DNTIRVWDLDT-LEAVMTLNGHTD-APMSLLCW----DQYLLSCSLD 375 (479)
Q Consensus 305 ~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~-dg~I~iwd~~~-~~~~~~~~~h~~-~v~~~~~~----~~~l~s~s~d 375 (479)
.+...+.+|.+.|+.+.|. |+.|++|+. |-.|..||++. ..++..+..|.. .-..+.|+ +++|++|+.|
T Consensus 241 --~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td 318 (406)
T KOG2919|consen 241 --RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD 318 (406)
T ss_pred --CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCC
Confidence 3577788999999999996 889999874 78999999986 556778877766 34445554 8999999999
Q ss_pred CeEEEEEcCCCcc-eEEeccccCccceEEEeeeeCCCCCcEEEEEeCC
Q 011711 376 NTIKVWIMTEEGN-LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND 422 (479)
Q Consensus 376 g~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 422 (479)
|.|++||+..... +..+..+...++.+++ +|- .+++++++..
T Consensus 319 G~V~vwdlk~~gn~~sv~~~~sd~vNgvsl----nP~-mpilatssGq 361 (406)
T KOG2919|consen 319 GSVRVWDLKDLGNEVSVTGNYSDTVNGVSL----NPI-MPILATSSGQ 361 (406)
T ss_pred ccEEEEecCCCCCcccccccccccccceec----Ccc-cceeeeccCc
Confidence 9999999988443 5555556665666665 365 3477776543
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=5.4e-18 Score=155.67 Aligned_cols=256 Identities=15% Similarity=0.197 Sum_probs=192.5
Q ss_pred CCCCCCCCCc-eeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCCC
Q 011711 93 PPSYNCPKNN-VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECR 171 (479)
Q Consensus 93 i~~~~~s~~g-~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d~ 171 (479)
+.++.|+... --+|+.+.|..+++|-..++....|-..- ..| ....++......-.+++|+..+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k---~~g------------d~~~Cv~~~s~S~y~~sgG~~~ 101 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK---LTG------------DNAFCVACASQSLYEISGGQSG 101 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeec---ccc------------chHHHHhhhhcceeeeccCcCc
Confidence 5899997776 55777788999999966655332222111 111 1112222333346889999999
Q ss_pred eEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcC
Q 011711 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMP 251 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (479)
+|+|||+... .+.+.+++|++.|+++.++-...+||+++..|.|.|..+.++.....+..+
T Consensus 102 ~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~------------------ 162 (673)
T KOG4378|consen 102 CVKIWDLRAK-LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID------------------ 162 (673)
T ss_pred eeeehhhHHH-HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC------------------
Confidence 9999999855 677889999999999999999999999999999999999998876665432
Q ss_pred CeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---
Q 011711 252 NVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--- 325 (479)
Q Consensus 252 ~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--- 325 (479)
....|.-+.+++. +|.+++.+|.|.+||+..... .......|..+...|+|+
T Consensus 163 ------------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~HsAP~~gicfspsn 220 (673)
T KOG4378|consen 163 ------------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHSAPCRGICFSPSN 220 (673)
T ss_pred ------------------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhccCCcCcceecCCc
Confidence 1122345566655 788899999999999877543 355677899999999996
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCc-ceEEeccccCccceE
Q 011711 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG-NLEVAYTHNEDHGVL 402 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~ 402 (479)
..+|++.+.|..|.+||.++.+....+.. ..+..++++. |.+|+.|...|.|..||++..+ ++..+..|...+..+
T Consensus 221 e~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 221 EALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred cceEEEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEE
Confidence 67899999999999999998877776653 3445666665 8899999999999999998654 556666677766666
Q ss_pred EEe
Q 011711 403 ALG 405 (479)
Q Consensus 403 ~~~ 405 (479)
++.
T Consensus 300 afq 302 (673)
T KOG4378|consen 300 AFQ 302 (673)
T ss_pred Eee
Confidence 654
No 165
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.2e-17 Score=137.73 Aligned_cols=248 Identities=14% Similarity=0.152 Sum_probs=177.4
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEec
Q 011711 80 ESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW 159 (479)
Q Consensus 80 ~~p~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 159 (479)
..|.-++.+|..+++.++|. ..+|.||+ ||-++-|.-.+-... ..+ .-.+-..+.......+-.....+...+
T Consensus 52 k~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es---~~~-K~lwe~~~P~~~~~~evPeINam~ldP 124 (325)
T KOG0649|consen 52 KLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEES---LAT-KRLWEVKIPMQVDAVEVPEINAMWLDP 124 (325)
T ss_pred CcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhh---ccc-hhhhhhcCccccCcccCCccceeEecc
Confidence 34444668999999999999 45788888 799987743332110 000 001111111111111112224667777
Q ss_pred cCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-----
Q 011711 160 LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA----- 234 (479)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~----- 234 (479)
..+.++.++.|+.++.||++++ +..++++||++-|.++.--.....++||+.||++|+||+++++++..+....
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~l 203 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLL 203 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhc
Confidence 7888888889999999999999 8999999999999999986666679999999999999999999998886432
Q ss_pred ------ceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccc
Q 011711 235 ------EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQL 308 (479)
Q Consensus 235 ------~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 308 (479)
-+.++..+..++++|....+.+|++...+..........+..+.|..+.++++++.+.|.-|.+..- +
T Consensus 204 Rp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gv------l 277 (325)
T KOG0649|consen 204 RPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGV------L 277 (325)
T ss_pred CcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeeccE------E
Confidence 2456666889999999999999999999988777778889999999999999999999999987642 2
Q ss_pred eeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEE
Q 011711 309 AALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVW 341 (479)
Q Consensus 309 ~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iw 341 (479)
...........++..++ -+.+-.++....+.++
T Consensus 278 ~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 278 QANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 22333334445555554 2334444555555554
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.5e-18 Score=160.51 Aligned_cols=258 Identities=21% Similarity=0.338 Sum_probs=182.5
Q ss_pred EEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceE
Q 011711 186 AKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEF 265 (479)
Q Consensus 186 ~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~ 265 (479)
.++..|.+.|.+++|++....|++++.||++++|+++....-... .-....
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~-----------------------------~~epi~ 338 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEK-----------------------------DVEPIL 338 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCcccc-----------------------------ceeeeE
Confidence 367789999999999999999999999999999999441110000 001224
Q ss_pred EecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCC-----CcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC
Q 011711 266 SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ-----NPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN 336 (479)
Q Consensus 266 ~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~-----~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg 336 (479)
++.+|.++|.|+++..+ .+++|+-||+|+.|++..+.. .+..+...+.||.+.|..++++ ...|++++.||
T Consensus 339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg 418 (577)
T KOG0642|consen 339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG 418 (577)
T ss_pred EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCc
Confidence 67789999999999877 999999999999998763221 1123456788999999999997 67899999999
Q ss_pred eEEEEECCCCcEEEEEeCC--CCCcEEEEEcCC---EEEEEeCCCeEEEEEcCCCcceEEeccccCccc---eEEEeeee
Q 011711 337 TIRVWDLDTLEAVMTLNGH--TDAPMSLLCWDQ---YLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHG---VLALGGLN 408 (479)
Q Consensus 337 ~I~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~ 408 (479)
++++|+.....+ .++... .+...++.+... +.++...-+.--+++......+..+.....+.. ...-...+
T Consensus 419 Tvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs 497 (577)
T KOG0642|consen 419 TVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS 497 (577)
T ss_pred eEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEe
Confidence 999999877665 344332 233445555433 233333333333344443333333322111111 11122233
Q ss_pred CCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 409 DPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 409 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
.|.+. +.+++..|+.|+++|..+++.+.... |...++++++.|+| +|++|+.||.|++|++..+.
T Consensus 498 ~~~~~-~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 498 HPTAD-ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cCCCC-eeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 46665 88999999999999999999887765 58899999999999 99999999999999986543
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=1.7e-17 Score=157.47 Aligned_cols=265 Identities=14% Similarity=0.229 Sum_probs=197.4
Q ss_pred CCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 011711 151 TPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (479)
Q Consensus 151 ~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~ 230 (479)
....+|+.+.++.++-+.. ..+.+||..+| .++.++++|++.|.+++|+.||+.++||+.|+.|.+|+.+-...+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG-~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L--- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDG-TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL--- 88 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCc-ccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee---
Confidence 4568899999996664432 57889999999 899999999999999999999999999999999999986432211
Q ss_pred ecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccc
Q 011711 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQL 308 (479)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~ 308 (479)
...|...|.||.|+|- .|++++-+ ..-+|.......
T Consensus 89 ------------------------------------kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V----- 126 (1081)
T KOG1538|consen 89 ------------------------------------KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV----- 126 (1081)
T ss_pred ------------------------------------eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-----
Confidence 1248888999999987 66666543 567787654321
Q ss_pred eeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEe---CCCCCcEEEEEc-------CCEEEEEeCCC
Q 011711 309 AALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN---GHTDAPMSLLCW-------DQYLLSCSLDN 376 (479)
Q Consensus 309 ~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~---~h~~~v~~~~~~-------~~~l~s~s~dg 376 (479)
. -......|.+.+|. |.+++.|-.||+|.+-+- +++....+. +..++|.++.+. .+.++......
T Consensus 127 -~-K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q 203 (1081)
T KOG1538|consen 127 -S-KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ 203 (1081)
T ss_pred -H-hhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc
Confidence 1 11224467788885 999999999999999874 444433443 467789999997 25788899999
Q ss_pred eEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc-
Q 011711 377 TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG- 454 (479)
Q Consensus 377 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g- 454 (479)
++.++.+.. +.+.......-+.-++.. -++|+ ++..|+.|+.+++|.- .+-.+.+... ...|+.++..|++
T Consensus 204 TLSFy~LsG-~~Igk~r~L~FdP~CisY----f~NGE-y~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ 276 (1081)
T KOG1538|consen 204 TLSFYQLSG-KQIGKDRALNFDPCCISY----FTNGE-YILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQ 276 (1081)
T ss_pred eeEEEEecc-eeecccccCCCCchhhee----ccCCc-EEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCc
Confidence 999998853 333322222223233333 39999 6667888999999964 4555555544 6789999999999
Q ss_pred eEEEEcCCCcEEEEEecc
Q 011711 455 LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 455 ~l~sg~~dg~v~vw~~~~ 472 (479)
.++.|+.||+|.-|++..
T Consensus 277 ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 277 YVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eEEEEEccCeeehhhhHH
Confidence 999999999999998754
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1e-18 Score=175.68 Aligned_cols=242 Identities=19% Similarity=0.280 Sum_probs=189.0
Q ss_pred cccEEEEEeCCCCCE----EEEEeCCCcEEEEECCCC---ceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCce
Q 011711 192 KKAVSGIALPLRSDK----LYSGSRDGTVQLWDCHTG---QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~----l~s~s~Dg~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~ 264 (479)
...-..++|.+.+.. ||.|..||.|.+||...- .... ..
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------------------------~l 109 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------------------------VL 109 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------------------------HH
Confidence 456788999887765 888999999999998652 1111 11
Q ss_pred EEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeE
Q 011711 265 FSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTI 338 (479)
Q Consensus 265 ~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I 338 (479)
.+...|.+.|..+.|++. .|++|+.||.|.|||++.... ++..- -....+.|.+++|+ ...|++++.+|.+
T Consensus 110 a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t-P~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 110 ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET-PFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC-CCCCC--CCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 245579999999999865 999999999999999987432 22221 23356789999998 6789999999999
Q ss_pred EEEECCCCcEEEEEeCCCCC--cEEEEEcC---CEEEEEeCCC---eEEEEEcCCCcc-eEEeccccCccceEEEeeeeC
Q 011711 339 RVWDLDTLEAVMTLNGHTDA--PMSLLCWD---QYLLSCSLDN---TIKVWIMTEEGN-LEVAYTHNEDHGVLALGGLND 409 (479)
Q Consensus 339 ~iwd~~~~~~~~~~~~h~~~--v~~~~~~~---~~l~s~s~dg---~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 409 (479)
.|||++..+.+-.+..+... +..+.|+. ..|++++.|. .|.+||++.... ++.+..|...+..+.+ .
T Consensus 187 ~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsW----c 262 (1049)
T KOG0307|consen 187 VIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSW----C 262 (1049)
T ss_pred eeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeecc----C
Confidence 99999999998888877664 55677773 4566666653 699999886643 4444567766554444 4
Q ss_pred CCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc--eEEEEcCCCcEEEEEeccCC
Q 011711 410 PDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG--LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 410 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~~~ 474 (479)
+.+..++++++.|+.|.+|+.++++.+..+.. .+.+..+.|.|.. .+++.+-||.|.|+.+....
T Consensus 263 ~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 263 PQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 77766999999999999999999999999886 6779999999988 88899999999999987654
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=2.8e-17 Score=147.09 Aligned_cols=204 Identities=20% Similarity=0.292 Sum_probs=167.5
Q ss_pred EecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCC--CcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCe
Q 011711 266 SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQ--NPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNT 337 (479)
Q Consensus 266 ~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~ 337 (479)
...+|.+.|..++|.|- .||+|++|.+|.+|++..+.. ...+++..+.+|...|--+.|+ .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 45689999999999865 999999999999999876543 2246678899999999999998 789999999999
Q ss_pred EEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcE
Q 011711 338 IRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPV 415 (479)
Q Consensus 338 I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (479)
|.+||+.+++.+.++. |.+.|.++.|+ |.+|++.+.|..|+|||.++++.+..-..|.+....-++. -.+|. +
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif---l~~g~-i 230 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF---LASGK-I 230 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE---eccCc-e
Confidence 9999999999999988 99999999988 8999999999999999999998887776666654433332 26776 6
Q ss_pred EEEEe---CCCeEEEeecCCCceeee---eeccCceEEEEECCCc--eEEEEcCCCcEEEEEeccCC
Q 011711 416 LICSC---NDDSVHLYELPSFMERGR---IFSRREVRVIETGPDG--LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 416 l~s~~---~dg~v~iwd~~~~~~~~~---~~~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~~~ 474 (479)
+.+|- .+.++-+||..+.+.... +.....|.---+.||. ..++|-.||.|+.|++.+++
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 66663 578899999887665433 3346667777778887 66788889999999998765
No 170
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.3e-17 Score=147.42 Aligned_cols=308 Identities=16% Similarity=0.149 Sum_probs=212.7
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecC
Q 011711 72 NPCRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTT 151 (479)
Q Consensus 72 ~p~~~l~~~~p~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (479)
|.-+|+|..+-.+.+.+|.+-|+++.||.+|++||||++|-.++||+.+..-.. .
T Consensus 38 F~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~----------k--------------- 92 (609)
T KOG4227|consen 38 FRPDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR----------K--------------- 92 (609)
T ss_pred hchhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh----------c---------------
Confidence 344567776667788999999999999999999999999999999965432110 0
Q ss_pred CCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEe-cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 011711 152 PKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (479)
Q Consensus 152 ~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~-~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~ 230 (479)
+. +++.... .|.+.|.+++|.....+|++|..+++|...|+++.+.+..+
T Consensus 93 ----------------------------~~-KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~ 143 (609)
T KOG4227|consen 93 ----------------------------TP-KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA 143 (609)
T ss_pred ----------------------------CC-CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee
Confidence 00 2333332 35689999999999999999999999999999998877665
Q ss_pred ecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccc
Q 011711 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQL 308 (479)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~ 308 (479)
... ...+.|+.+..+|. .|++.+.++.|.+||.+..... ..+
T Consensus 144 ~~~-----------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~-~~~ 187 (609)
T KOG4227|consen 144 NEN-----------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP-ISL 187 (609)
T ss_pred ccc-----------------------------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCC-Cce
Confidence 422 24457888887765 8999999999999998876531 222
Q ss_pred eeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcE-EEEE------eCCCCCcEEEEEc--CCEEEEEeCCC
Q 011711 309 AALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEA-VMTL------NGHTDAPMSLLCW--DQYLLSCSLDN 376 (479)
Q Consensus 309 ~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~-~~~~------~~h~~~v~~~~~~--~~~l~s~s~dg 376 (479)
. .+........++-|+ ..+|++.+..+-+-+||.+..+. +... +.....-+...|+ |+.+++--...
T Consensus 188 ~-~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~ 266 (609)
T KOG4227|consen 188 V-LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK 266 (609)
T ss_pred e-eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC
Confidence 2 223344556677776 67899999999999999986432 2211 1111122455555 67777766666
Q ss_pred eEEEEEcCCCcceEEeccccCcc--ceEE-EeeeeCCCCCcEEEEEeCCCeEEEeecCCCce------eee---------
Q 011711 377 TIKVWIMTEEGNLEVAYTHNEDH--GVLA-LGGLNDPDGNPVLICSCNDDSVHLYELPSFME------RGR--------- 438 (479)
Q Consensus 377 ~i~iwd~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------~~~--------- 438 (479)
.-.+||+.+..+......|+... .... -++.+ .+ .+-+++|+.+=.|++|.++.... +..
T Consensus 267 ~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F-~~-D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 267 CPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTF-ID-DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred CCEEeeeecccceeEeccCCCCcceeeeeeeeeee-ec-ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 67788888766655554444311 1111 11222 22 23589999999999999864211 111
Q ss_pred --------ee-ccCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 439 --------IF-SRREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 439 --------~~-~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
+. |..-+..+.|+|.. +|++.+-...+++|.--.
T Consensus 345 ~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 345 FIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred eecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 11 35568889999988 889999999999997433
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=8e-17 Score=140.70 Aligned_cols=263 Identities=18% Similarity=0.206 Sum_probs=185.6
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEECCCCc--------------eEEEEecCCceeEEE---------eCCCEEE-EEc
Q 011711 195 VSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ--------------SASVINLGAEVGSLI---------CEGPWVF-VGM 250 (479)
Q Consensus 195 V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~--------------~~~~~~~~~~~~~~~---------~~~~~l~-~~~ 250 (479)
...+.|+|||..|++-+.|..+.+|++...- ....+..+..+.... ++..+++ ++.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4457899999999999999999999985321 111112222222111 2334444 457
Q ss_pred CCeEEEEEcCCCceEE---ecCCC---ccEEEEEEcCC--EEEEEeCCCcEEEEEc-cCCCCCcccc--eeeecCCCCCe
Q 011711 251 PNVVKAWHIESSAEFS---LDGPV---GEVYSMVVANE--MLFAGAQDGNILVWKG-IPNTQNPFQL--AALLKGHTRPV 319 (479)
Q Consensus 251 ~~~i~v~~~~~~~~~~---~~~~~---~~v~~~~~~~~--~l~~g~~dg~i~iwd~-~~~~~~~~~~--~~~~~~h~~~i 319 (479)
+.-|++||.-+++... ...|. ....+++|+++ .|++| ....|++||+ +.+...+... ...-.+..+-|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 8999999999998752 22233 34568899998 56555 5679999998 4443211111 11123446778
Q ss_pred EEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeC-CCeEEEEEcCCCc-ceEEe
Q 011711 320 TCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL-DNTIKVWIMTEEG-NLEVA 392 (479)
Q Consensus 320 ~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~-dg~i~iwd~~~~~-~~~~~ 392 (479)
.|++++ ...++.|+....+-|+.-..+.++..+-+|.+.|+.+.+. |+.|++|+. |..|..||++... .+..+
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L 290 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL 290 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence 889997 5689999999999999999999999999999999999997 788888876 7899999998754 34444
Q ss_pred ccccC-ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC-Cceeeee-eccCceEEEEECCCc-eEEEEcC
Q 011711 393 YTHNE-DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS-FMERGRI-FSRREVRVIETGPDG-LFFTGDG 461 (479)
Q Consensus 393 ~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~-~~~~~v~~l~~s~~g-~l~sg~~ 461 (479)
..|.. ....+.| ...|+++ +|++|+.||.|++||++. +.....+ .+...++.++++|-- ++++++.
T Consensus 291 ~rhv~~TNQRI~F--Dld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 291 ERHVGDTNQRILF--DLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhccCccceEEE--ecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 44444 2223333 3368888 999999999999999988 5544443 357889999999987 6666654
No 172
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.4e-17 Score=155.45 Aligned_cols=256 Identities=20% Similarity=0.270 Sum_probs=183.6
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEE--eccCC
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCY--HWLSG 162 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~--~~~~~ 162 (479)
++.-|.+.|..++|.+-.-.++++++||++++|++.... + .........-.+.+|.+..+|. .....
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~----~-------s~~~~~epi~tfraH~gPVl~v~v~~n~~ 357 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK----K-------SAEKDVEPILTFRAHEGPVLCVVVPSNGE 357 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC----C-------ccccceeeeEEEecccCceEEEEecCCce
Confidence 667799999999999999999999999999999884311 1 1111224456677787776664 44566
Q ss_pred eeEeCCCCCeEEEeecC------CCc---eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 011711 163 NCVKGDECRFWHSWFCG------EGF---TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~------~~~---~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 233 (479)
.|.+|+-||+|+.|++. +.. .+...+.||++.|..+++++....|++++.||+|+.|+...... .++...
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~ 436 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP 436 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc
Confidence 99999999999999553 222 45678899999999999999999999999999999999877665 333221
Q ss_pred C---ceeEEEeC-CC--EE-EEEcCCeEEEEEcCCCceEEec--------CCCccEEEEEEcCC--EEEEEeCCCcEEEE
Q 011711 234 A---EVGSLICE-GP--WV-FVGMPNVVKAWHIESSAEFSLD--------GPVGEVYSMVVANE--MLFAGAQDGNILVW 296 (479)
Q Consensus 234 ~---~~~~~~~~-~~--~l-~~~~~~~i~v~~~~~~~~~~~~--------~~~~~v~~~~~~~~--~l~~g~~dg~i~iw 296 (479)
. -...+... .+ .. +....+.-.+++++....+.+. .....+.-+..+++ ..+++..|+.|+++
T Consensus 437 ~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~ 516 (577)
T KOG0642|consen 437 KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF 516 (577)
T ss_pred cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence 1 11222221 11 11 1112222233333333322111 12244666677766 89999999999999
Q ss_pred EccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCC
Q 011711 297 KGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357 (479)
Q Consensus 297 d~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 357 (479)
|..++. ++.....|...+++++++ |.+|++++.|+.+++|.+....++.....|..
T Consensus 517 dn~~~~-----~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 517 DNKTGK-----ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cccccc-----cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence 988864 577888999999999996 89999999999999999998888877776643
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=6.5e-16 Score=151.41 Aligned_cols=265 Identities=17% Similarity=0.170 Sum_probs=186.8
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCC-CCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEE
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVG 249 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~-~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (479)
+.+.+|++.....+-..+. -...|++++|+|. ..+++.|..+|.|.+||+..+.....
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------------- 280 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------------- 280 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC--------------------
Confidence 4899999988755555554 4688999999885 56788888999999999987764210
Q ss_pred cCCeEEEEEcCCCceEEecCCCccEEEEEEcCC----EEEEEeCCCcEEEEEccCCCCCcccceeeec-------CCCCC
Q 011711 250 MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLK-------GHTRP 318 (479)
Q Consensus 250 ~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-------~h~~~ 318 (479)
.........|...+..+.|..+ .+++++.||.|..|+++.-............ .-...
T Consensus 281 -----------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~ 349 (555)
T KOG1587|consen 281 -----------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVG 349 (555)
T ss_pred -----------cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccc
Confidence 0111223458888888888755 5999999999999987654321111111111 12346
Q ss_pred eEEEEEc---CCEEEEEeCCCeEEEEECCCC--------cEEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcC
Q 011711 319 VTCLAVG---GKRLYSGSMDNTIRVWDLDTL--------EAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 319 i~~l~~~---~~~l~sgs~dg~I~iwd~~~~--------~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~ 384 (479)
+++++|. .+.+++|+.+|.|.-=+.... +.+..+..|.+.|.++.++ .+.+++++ |.+++||.-.
T Consensus 350 ~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~ 428 (555)
T KOG1587|consen 350 ATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSED 428 (555)
T ss_pred eeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEecccc
Confidence 7888884 778999999999987443322 2234566788889998887 45666666 9999999876
Q ss_pred -CCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee---ccCceEEEEECCCc-eEEEE
Q 011711 385 -EEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF---SRREVRVIETGPDG-LFFTG 459 (479)
Q Consensus 385 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~l~~s~~g-~l~sg 459 (479)
...++..+..+... .....|+|-...+++++..||.+.+||+.......... +....+.+.|+++| .|+.|
T Consensus 429 ~~~~Pl~~~~~~~~~----v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavG 504 (555)
T KOG1587|consen 429 VIASPLLSLDSSPDY----VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVG 504 (555)
T ss_pred CCCCcchhhhhccce----eeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEe
Confidence 44444333333332 44556678888899999999999999997544332222 25567788888889 99999
Q ss_pred cCCCcEEEEEecc
Q 011711 460 DGTGMLSVWKILA 472 (479)
Q Consensus 460 ~~dg~v~vw~~~~ 472 (479)
+..|.+.+|++..
T Consensus 505 d~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 505 DANGTTHILKLSE 517 (555)
T ss_pred cCCCcEEEEEcCc
Confidence 9999999999964
No 174
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.5e-15 Score=145.31 Aligned_cols=387 Identities=14% Similarity=0.166 Sum_probs=237.7
Q ss_pred CCCCCCCCCCCCCCCCCCCc---eeccCCCCCCccccccccCCCCCC------CCCC------c-----cccccCcCC--
Q 011711 83 TLPVSNHKKSPPSYNCPKNN---VRVSSGSEEGTTHVQNRENPDRTV------PNKS------S-----LDCSTGSDD-- 140 (479)
Q Consensus 83 ~~~~~gh~~~i~~~~~s~~g---~~las~~~dg~i~iw~~~~~~~~~------~~~~------~-----~~~~~~~~~-- 140 (479)
...+.+|..++.++.+-|.. .++.+++.||.|++|+-.++.... +... . ....+..+.
T Consensus 50 i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~ 129 (792)
T KOG1963|consen 50 ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSI 129 (792)
T ss_pred hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeeccccee
Confidence 33778899999999984443 577789999999999887754220 0000 0 000000000
Q ss_pred --------CCCeee-----eeecCCCeEEE--------eccCCeeEeCCCCCeEEEeecCCCceeeEE---EecccccEE
Q 011711 141 --------SGSKRT-----LERTTPKNVCY--------HWLSGNCVKGDECRFWHSWFCGEGFTMLAK---LEGHKKAVS 196 (479)
Q Consensus 141 --------~~~~~~-----~~~~~~~~~c~--------~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~---~~~H~~~V~ 196 (479)
....+. ......+..|- .-..+.+..--.+-.+++|+..+..+.... -..|.-.++
T Consensus 130 ~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t 209 (792)
T KOG1963|consen 130 LTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNIT 209 (792)
T ss_pred eeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccce
Confidence 000000 00000011111 111122222223456788888764211111 124777799
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCC--Cc--eEEEEe-cCCceeEEE--eCCCEEEEE-cCCeEEEEEcCCCceEEec
Q 011711 197 GIALPLRSDKLYSGSRDGTVQLWDCHT--GQ--SASVIN-LGAEVGSLI--CEGPWVFVG-MPNVVKAWHIESSAEFSLD 268 (479)
Q Consensus 197 ~l~~s~~~~~l~s~s~Dg~v~vwd~~~--~~--~~~~~~-~~~~~~~~~--~~~~~l~~~-~~~~i~v~~~~~~~~~~~~ 268 (479)
+.+++|+++++|++..||.|.+|.--. +. ....+. +..++.++. .+|.+|++| ..+.+.+|.+++++..-+.
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLP 289 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLP 289 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccc
Confidence 999999999999999999999996432 21 222233 345666555 478877765 7789999999999977777
Q ss_pred CCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeee--------cCCCCCeEEEEEc--CCEEEEEeCCC
Q 011711 269 GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL--------KGHTRPVTCLAVG--GKRLYSGSMDN 336 (479)
Q Consensus 269 ~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--------~~h~~~i~~l~~~--~~~l~sgs~dg 336 (479)
.-.+.|..+.++++ ..+...+|+.|.+....+.... ..+..+ ....+-.+.++++ .+.++-.+..|
T Consensus 290 RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k--~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g 367 (792)
T KOG1963|consen 290 RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK--STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPG 367 (792)
T ss_pred ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh--hhccCccCCCccccccccccceeEEEcCCCCceeecCCCc
Confidence 88899999999988 7888888999999987543210 001111 1123334556666 56677788999
Q ss_pred eEEEEECCCCcEEEEEe-----CCCCC------cEEEEEc--CCEEEEEeC--------C--CeEEEEEcCCCcceEEec
Q 011711 337 TIRVWDLDTLEAVMTLN-----GHTDA------PMSLLCW--DQYLLSCSL--------D--NTIKVWIMTEEGNLEVAY 393 (479)
Q Consensus 337 ~I~iwd~~~~~~~~~~~-----~h~~~------v~~~~~~--~~~l~s~s~--------d--g~i~iwd~~~~~~~~~~~ 393 (479)
.|.+||+.+.+.+..+. .+.+. ++++... |.++++.-. | -.+++|-......-..+.
T Consensus 368 ~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~ 447 (792)
T KOG1963|consen 368 HVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILN 447 (792)
T ss_pred eEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEE
Confidence 99999999988776663 12222 3333333 777777532 3 357889776554322222
Q ss_pred c---ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee-----------eccCceEEEEECCCceEEEE
Q 011711 394 T---HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI-----------FSRREVRVIETGPDGLFFTG 459 (479)
Q Consensus 394 ~---~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-----------~~~~~v~~l~~s~~g~l~sg 459 (479)
. ........+.+.. ++......++++.||.++||-+...+.+... .+..++++++|+.||.+++.
T Consensus 448 T~I~~PH~~~~vat~~~-~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~ 526 (792)
T KOG1963|consen 448 TKINNPHGNAFVATIFL-NPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV 526 (792)
T ss_pred EEEecCCCceeEEEEEe-cCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE
Confidence 1 2222222222222 2332227889999999999998543222111 25788999999999988888
Q ss_pred cCCCcEEEEEecc
Q 011711 460 DGTGMLSVWKILA 472 (479)
Q Consensus 460 ~~dg~v~vw~~~~ 472 (479)
+.|++|.+||..+
T Consensus 527 s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 527 SFDDTITIWDYDT 539 (792)
T ss_pred ecCCEEEEecCCC
Confidence 8999999999877
No 175
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.9e-14 Score=128.25 Aligned_cols=279 Identities=16% Similarity=0.195 Sum_probs=199.1
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCce-EEEEecCCceeEEEeCCCEEEE-Ec--CCeEEEEEcCCCceEEe
Q 011711 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS-ASVINLGAEVGSLICEGPWVFV-GM--PNVVKAWHIESSAEFSL 267 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-~~--~~~i~v~~~~~~~~~~~ 267 (479)
...+..+.|+.+...|..|+.|| .++++.+.... ......+..+..+.+...+++. +. ...++++++.....+--
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence 34567777999999999999988 68888766443 2222233445555666665553 33 34699999988877655
Q ss_pred cCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEE--eCCCeEEEEEC
Q 011711 268 DGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSG--SMDNTIRVWDL 343 (479)
Q Consensus 268 ~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sg--s~dg~I~iwd~ 343 (479)
..-...|.++..+.+.|++.-++. |+|||++.-.. ..-+.....+...+..++++ +.+++-- ...|.|.+||+
T Consensus 84 ~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mkl--LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 84 IFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKL--LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred EecCCceEEEEEccceEEEEEccc-EEEEeccccee--ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 556678999999999888888775 99999987543 22223333456667778876 4566653 24689999999
Q ss_pred CCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCe-EEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe
Q 011711 344 DTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNT-IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (479)
Q Consensus 344 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 420 (479)
.+.+.+..+..|.+.+.+++++ |.+|+++|..|+ |||+.+.+++.+.++...... +...++.|+|+++ +|++.+
T Consensus 161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~--~~IySL~Fs~ds~-~L~~sS 237 (391)
T KOG2110|consen 161 INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYP--VSIYSLSFSPDSQ-FLAASS 237 (391)
T ss_pred ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCcee--eEEEEEEECCCCC-eEEEec
Confidence 9999999999999999999998 899999999986 789999999877777654443 3344556789998 888889
Q ss_pred CCCeEEEeecCCCceee---------------------------ee------------eccCceEEEEEC--CCc-eEEE
Q 011711 421 NDDSVHLYELPSFMERG---------------------------RI------------FSRREVRVIETG--PDG-LFFT 458 (479)
Q Consensus 421 ~dg~v~iwd~~~~~~~~---------------------------~~------------~~~~~v~~l~~s--~~g-~l~s 458 (479)
+.++|++|.++...... .. ...+.-..+.+. +.. ++..
T Consensus 238 ~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~v 317 (391)
T KOG2110|consen 238 NTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLV 317 (391)
T ss_pred CCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEE
Confidence 99999999886421000 00 001111223333 344 8888
Q ss_pred EcCCCcEEEEEeccCCCCC
Q 011711 459 GDGTGMLSVWKILAKPNAE 477 (479)
Q Consensus 459 g~~dg~v~vw~~~~~~~~~ 477 (479)
++.||.++.|.+..++..+
T Consensus 318 as~dG~~y~y~l~~~~gGe 336 (391)
T KOG2110|consen 318 ASYDGHLYSYRLPPKEGGE 336 (391)
T ss_pred EEcCCeEEEEEcCCCCCce
Confidence 9999999999998875554
No 176
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=1.1e-13 Score=136.07 Aligned_cols=312 Identities=26% Similarity=0.425 Sum_probs=224.6
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccc-cEEEEEe-CCCCC-EEEEEeC-CCcEEEEECCC-CceE
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKK-AVSGIAL-PLRSD-KLYSGSR-DGTVQLWDCHT-GQSA 227 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~-~V~~l~~-s~~~~-~l~s~s~-Dg~v~vwd~~~-~~~~ 227 (479)
..+++......+..++.|+.+.+|+...+...+..+.++.. .+..+.+ .+++. .++..+. |+.+.+||... ....
T Consensus 69 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 148 (466)
T COG2319 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI 148 (466)
T ss_pred EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE
Confidence 35556666777888889999999999888547777777554 7888887 78887 5555455 99999999998 5665
Q ss_pred EEEecC-CceeEEE--eCCCEEEEEc--CCeEEEEEcCCCce-EEecCCCccEEEEEEcCC--EEEEE-eCCCcEEEEEc
Q 011711 228 SVINLG-AEVGSLI--CEGPWVFVGM--PNVVKAWHIESSAE-FSLDGPVGEVYSMVVANE--MLFAG-AQDGNILVWKG 298 (479)
Q Consensus 228 ~~~~~~-~~~~~~~--~~~~~l~~~~--~~~i~v~~~~~~~~-~~~~~~~~~v~~~~~~~~--~l~~g-~~dg~i~iwd~ 298 (479)
..+..+ ..+..+. +++..++.+. ++.+++|+...... .....|...+.++++.++ .++++ +.|+.|.+||.
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~ 228 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228 (466)
T ss_pred EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEEC
Confidence 555544 3444343 4666666653 89999999998554 456668999999999977 24554 89999999987
Q ss_pred cCCCCCccccee-eecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCCCcEEEEEc--CCEEEEE
Q 011711 299 IPNTQNPFQLAA-LLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA-VMTLNGHTDAPMSLLCW--DQYLLSC 372 (479)
Q Consensus 299 ~~~~~~~~~~~~-~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~v~~~~~~--~~~l~s~ 372 (479)
..+. ... .+..|.... ...|+ +..+++++.|+.+++||++.... +..+..|...+.++.+. +..++++
T Consensus 229 ~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 229 STGK-----LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred CCCc-----EEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 7432 344 577887774 32454 67888999999999999997665 55557788889988887 4778889
Q ss_pred eCCCeEEEEEcCCCcceEEec--cccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEE
Q 011711 373 SLDNTIKVWIMTEEGNLEVAY--THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIET 450 (479)
Q Consensus 373 s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~ 450 (479)
+.|+.+.+||........... .+...+..+.+ .+++..+...+..|+.+.+|+...............+..+.+
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF----SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSF 378 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCCceEEEEE----CCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEE
Confidence 999999999988776655554 34332222222 244343455446889999999988873333333333889999
Q ss_pred CCCc-eEEE-EcCCCcEEEEEeccCCC
Q 011711 451 GPDG-LFFT-GDGTGMLSVWKILAKPN 475 (479)
Q Consensus 451 s~~g-~l~s-g~~dg~v~vw~~~~~~~ 475 (479)
.+ . .++. +..++.+.+|+......
T Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 379 SP-DGRVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred CC-CCCEEEEecCCCceEEEecccCee
Confidence 88 5 4444 78999999999877543
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=2.1e-16 Score=136.05 Aligned_cols=197 Identities=17% Similarity=0.234 Sum_probs=156.9
Q ss_pred eeEEEe-cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCce-EEEEecCCcee---EE-----E--eCCCEEEEEcC
Q 011711 184 MLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS-ASVINLGAEVG---SL-----I--CEGPWVFVGMP 251 (479)
Q Consensus 184 ~~~~~~-~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~-~~~~~~~~~~~---~~-----~--~~~~~l~~~~~ 251 (479)
.+..+. .|-+.|.|+.|.|++..|++-. |..|.+|+++.+.. +..+....... .+ . .+++.+++..+
T Consensus 114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d 192 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD 192 (370)
T ss_pred HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC
Confidence 344444 4667999999999999999877 78999999988776 44444332211 11 1 27889999999
Q ss_pred CeEEEEEcCCCceEE--ecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-
Q 011711 252 NVVKAWHIESSAEFS--LDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG- 325 (479)
Q Consensus 252 ~~i~v~~~~~~~~~~--~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~- 325 (479)
+++..||.++..+.. -..|...|..+.|+|+ +|++++.||.|++||.+..+ .++..+.+|..-|.++.|+
T Consensus 193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk----~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK----FPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC----ccccccCCCceEEEEEEecC
Confidence 999999999877642 3568888999999998 89999999999999998764 4688899999999999997
Q ss_pred --CCEEEEEeCCCeEEEEECCCC-----------------------------cEEEEEeCCCCCcEEEEEc---CCEEEE
Q 011711 326 --GKRLYSGSMDNTIRVWDLDTL-----------------------------EAVMTLNGHTDAPMSLLCW---DQYLLS 371 (479)
Q Consensus 326 --~~~l~sgs~dg~I~iwd~~~~-----------------------------~~~~~~~~h~~~v~~~~~~---~~~l~s 371 (479)
.+++++|+.|..|.+|...+- ..+.++..|.+.|.+++|+ +=.+++
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 788999999999999976321 1245677899999999998 346788
Q ss_pred EeCCCeEEEEEcCC
Q 011711 372 CSLDNTIKVWIMTE 385 (479)
Q Consensus 372 ~s~dg~i~iwd~~~ 385 (479)
-+.||.+.|=.+..
T Consensus 349 LSYDGRviIs~V~r 362 (370)
T KOG1007|consen 349 LSYDGRVIISSVPR 362 (370)
T ss_pred eccCceEEeecCCh
Confidence 99999998876543
No 178
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=1.5e-15 Score=153.61 Aligned_cols=282 Identities=17% Similarity=0.229 Sum_probs=190.3
Q ss_pred eeeEEEecccccEEEEEeCCCC-CEEEEEeCCCcEEEEECCCCc-------eEEEEe-cCCceeEEE--eCCCEEE-EEc
Q 011711 183 TMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQ-------SASVIN-LGAEVGSLI--CEGPWVF-VGM 250 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~-~~l~s~s~Dg~v~vwd~~~~~-------~~~~~~-~~~~~~~~~--~~~~~l~-~~~ 250 (479)
.++..+..|...|..++.++.. .+++|||.||+|++||+..-. ...++. .+..+..+. ..+..++ ++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 6788899999999999996654 999999999999999986422 223333 344444443 3555554 558
Q ss_pred CCeEEEEEcCCCc--eEE------e-cCCCccEEEEE-Ec---CC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCC
Q 011711 251 PNVVKAWHIESSA--EFS------L-DGPVGEVYSMV-VA---NE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (479)
Q Consensus 251 ~~~i~v~~~~~~~--~~~------~-~~~~~~v~~~~-~~---~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~ 316 (479)
||.|.+.+++... ... . ....+.+.+|. +. .. .++.+...+.|..||++..... + ........
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-w--~lk~~~~h 1195 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-W--RLKNQLRH 1195 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-H--hhhcCccc
Confidence 9999999987722 110 1 12233444443 22 22 7888899999999998875421 1 11233456
Q ss_pred CCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCCCcEEEEEc---C--CEEEEEe--CCCeEEEEEcCCC
Q 011711 317 RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDAPMSLLCW---D--QYLLSCS--LDNTIKVWIMTEE 386 (479)
Q Consensus 317 ~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~v~~~~~~---~--~~l~s~s--~dg~i~iwd~~~~ 386 (479)
+.|++++.+ ++++++|+..|.+.+||++-+.++..+. ++..++..+... + ...++++ ..+.|.+|++.++
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 789999998 8899999999999999999988887775 334556665554 3 4555544 4788999999988
Q ss_pred cceEEeccccC---------------cc-ceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCcee--------------
Q 011711 387 GNLEVAYTHNE---------------DH-GVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMER-------------- 436 (479)
Q Consensus 387 ~~~~~~~~~~~---------------~~-~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-------------- 436 (479)
.+...+....+ +. ....++.. ++++.++.+|+.|..|+.||....+..
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~--~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGV--CEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeec--ccCCceeeecCCccceeeccCCCcccccccccCcccccccc
Confidence 66555443311 00 01111111 455568999999999999997642211
Q ss_pred -------------------------------------------eeeeccCceEEEEECCCc--eEEEEcCCCcEEEEE
Q 011711 437 -------------------------------------------GRIFSRREVRVIETGPDG--LFFTGDGTGMLSVWK 469 (479)
Q Consensus 437 -------------------------------------------~~~~~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~ 469 (479)
....|+.+|++|++.... +|++++.||.|+||.
T Consensus 1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000135668888877655 999999999999994
No 179
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=3.5e-16 Score=140.70 Aligned_cols=165 Identities=22% Similarity=0.352 Sum_probs=130.6
Q ss_pred cccEEEEEeCCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCC
Q 011711 192 KKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGP 270 (479)
Q Consensus 192 ~~~V~~l~~s~~~~-~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~ 270 (479)
..+|.++.|.++.. .|+||+.|..|++|.+..++.-..- ..|. ..-.+..|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------------~~V~-------y~s~Ls~H 64 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------------MKVE-------YLSSLSRH 64 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------------eeEE-------EeecccCC
Confidence 46799999987766 9999999999999998765432100 0000 01245679
Q ss_pred CccEEEEEEcCC--EEEEEeCCCcEEEEEccC------CC-----CCcccceeeecCCCCCeEEEEEc--CCEEEEEeCC
Q 011711 271 VGEVYSMVVANE--MLFAGAQDGNILVWKGIP------NT-----QNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD 335 (479)
Q Consensus 271 ~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~------~~-----~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~d 335 (479)
...|+.+.|+++ +|++|+.+|.|.+|.... .. ...+.....+.+|...|..++|. ++++++++.|
T Consensus 65 ~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~d 144 (434)
T KOG1009|consen 65 TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVD 144 (434)
T ss_pred cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeecc
Confidence 999999999988 999999999999998761 11 11245567788999999999996 8899999999
Q ss_pred CeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcC
Q 011711 336 NTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 336 g~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (479)
..+++||+..|+.+..+..|...+..++++ ++++++-+.|...+.+++.
T Consensus 145 ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 145 NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 999999999999999999999999999988 6788888777766655543
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=4.9e-16 Score=132.20 Aligned_cols=264 Identities=16% Similarity=0.220 Sum_probs=181.1
Q ss_pred cCCeeEeCCCCCeEEEeecCCCceeeEEEe-cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec--CCce
Q 011711 160 LSGNCVKGDECRFWHSWFCGEGFTMLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL--GAEV 236 (479)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~-~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~--~~~~ 236 (479)
..+++.+|..-|.+++|++.+. ..+..++ .|...|+.+.--|+ ..|.+-+.|..+.+|++.-+..+..-.. +.--
T Consensus 24 a~~rL~sg~~~G~V~~w~lqt~-r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslg 101 (323)
T KOG0322|consen 24 ANERLMSGLSVGIVKMWVLQTE-RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLG 101 (323)
T ss_pred cchhhhcccccceEEEEEeecC-ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccc
Confidence 3457999999999999999888 5556666 57888999998887 5699999999999999987654433221 1100
Q ss_pred e---EEEeCC----CEEEEEcCC--eEEEEEcCCCceEE-----ecCCCccEEEEEEcCC-----EEEEEeCCCcEEEEE
Q 011711 237 G---SLICEG----PWVFVGMPN--VVKAWHIESSAEFS-----LDGPVGEVYSMVVANE-----MLFAGAQDGNILVWK 297 (479)
Q Consensus 237 ~---~~~~~~----~~l~~~~~~--~i~v~~~~~~~~~~-----~~~~~~~v~~~~~~~~-----~l~~g~~dg~i~iwd 297 (479)
. ++...+ ..++.-..+ .+.+-|........ .....+.+.+..+.-+ ++++|.++|.|.+||
T Consensus 102 FCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd 181 (323)
T KOG0322|consen 102 FCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWD 181 (323)
T ss_pred cccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEE
Confidence 0 011110 111111111 11112221111111 1234456777765432 788999999999999
Q ss_pred ccCCCCC-----cccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCC--cE----EEEEeCCCCCcEEEEE
Q 011711 298 GIPNTQN-----PFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL--EA----VMTLNGHTDAPMSLLC 364 (479)
Q Consensus 298 ~~~~~~~-----~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~--~~----~~~~~~h~~~v~~~~~ 364 (479)
+.++... ..+.......|..+|.++.+. -+.=++|+.+..+..|+++.. .+ ..+++.....-..+..
T Consensus 182 ~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp 261 (323)
T KOG0322|consen 182 LSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP 261 (323)
T ss_pred ccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc
Confidence 9886321 123344456799999999996 445678888889999988642 22 2233323333456777
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeec
Q 011711 365 WDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 365 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 430 (479)
+++.+++++.|+.||||+.++..++..+..|...+..+++ +|+.+ ++++++.|++|.+|++
T Consensus 262 D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAf----spd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 262 DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF----SPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEe----CCCCc-hhhhccCCceEEeeec
Confidence 7999999999999999999999999999999988888877 48766 8999999999999986
No 181
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.5e-16 Score=146.20 Aligned_cols=285 Identities=16% Similarity=0.190 Sum_probs=209.2
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeE----EE---eCCCEEEEEcCCeEE
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS----LI---CEGPWVFVGMPNVVK 255 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~----~~---~~~~~l~~~~~~~i~ 255 (479)
.+...|..|.+.|..+.|+..|..|+|+|.|..|.+||..+++....+..+..... +. .+..++..+.|+.++
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 55677899999999999999999999999999999999999988877764432211 22 255566678999999
Q ss_pred EEEcCCCceE----EecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC---CeEEEEEc
Q 011711 256 AWHIESSAEF----SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR---PVTCLAVG 325 (479)
Q Consensus 256 v~~~~~~~~~----~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~---~i~~l~~~ 325 (479)
+=.+.....+ .+..|.+.|.-++..|+ .|.+++.|+.+.-+|++.+... .....-..+.. ....++.+
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa--~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA--EKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcc--ceeeeeccCCccceeeeeEecC
Confidence 8776544432 35678999999998877 8999999999999999887542 22223333333 45567775
Q ss_pred ---CCEEEEEeCCCeEEEEECCCCcE------EEEEeCC------CCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCc-
Q 011711 326 ---GKRLYSGSMDNTIRVWDLDTLEA------VMTLNGH------TDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG- 387 (479)
Q Consensus 326 ---~~~l~sgs~dg~I~iwd~~~~~~------~~~~~~h------~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~- 387 (479)
.+++++|+.|..+++||.+.... +.++..| ...|+++.+. +.-|+++..|-.|+++.-..+.
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 56899999999999999876322 2333222 3358888888 4566666778889999433221
Q ss_pred -----------ceEE-eccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc
Q 011711 388 -----------NLEV-AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG 454 (479)
Q Consensus 388 -----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g 454 (479)
.... +.+|....+ +.-.-+|-|..+ ++++|+.-|.|.||+-.+++.+..+.. ..-|+|+.-+|--
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~T-VKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRT-VKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred CCCCCCcchhhccchhhcccccccc-cceeeeccCccc-eEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence 1111 334443333 222223457777 999999999999999999999888876 4579999999988
Q ss_pred -eEEEEcCCCcEEEEEec
Q 011711 455 -LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 455 -~l~sg~~dg~v~vw~~~ 471 (479)
.|++.|-|..|+||--.
T Consensus 449 PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTPL 466 (559)
T ss_pred chhhccCCccceeeecCC
Confidence 99999999999999763
No 182
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.9e-15 Score=131.76 Aligned_cols=192 Identities=15% Similarity=0.252 Sum_probs=149.8
Q ss_pred EEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEE
Q 011711 274 VYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349 (479)
Q Consensus 274 v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 349 (479)
..++.|++. +||+|+.||.|.+||+.+.. +...+.+|..+|+|++|+ |..|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-----hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence 667888765 99999999999999998854 577889999999999997 999999999999999999999999
Q ss_pred EEEeCCCCCcEEEEEcC---CEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEE
Q 011711 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVH 426 (479)
Q Consensus 350 ~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 426 (479)
+.+. ..++|....+.+ +..++.-.+..-.+-++..+.....-..........+-...+++.|+ ++++|...|.+.
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkll 178 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLL 178 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEecCcceEE
Confidence 8887 456788888772 34444444444556666543221111112222233333335678888 899999999999
Q ss_pred EeecCCCceeeeeec--cCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 427 LYELPSFMERGRIFS--RREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 427 iwd~~~~~~~~~~~~--~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
++|..+.+.+..+.- ...|..+.++..| .|+.-+.|..|+.|+++.
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 999999988887764 4689999999999 999999999999999874
No 183
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=6.4e-17 Score=157.27 Aligned_cols=280 Identities=17% Similarity=0.272 Sum_probs=212.1
Q ss_pred eeeecCCCeEEEec--cCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 011711 146 TLERTTPKNVCYHW--LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT 223 (479)
Q Consensus 146 ~~~~~~~~~~c~~~--~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~ 223 (479)
.+.+|.....|..+ .+.++++|+.|..++||..+++ .++....||.+.|+.++.+.+..+++++|.|..|++|.+.+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccch-hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 33455544556444 4559999999999999999888 88999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCC
Q 011711 224 GQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQ 303 (479)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 303 (479)
+..+..+ .+|.+.|++++|+|-. +.+.||++++||.+-...
T Consensus 264 ~~pvsvL-------------------------------------rghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~ 304 (1113)
T KOG0644|consen 264 GAPVSVL-------------------------------------RGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPR 304 (1113)
T ss_pred CchHHHH-------------------------------------hccccceeeeccCccc--cCCCCCceEecccccccc
Confidence 8877544 4799999999999955 788999999999872111
Q ss_pred CcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEE---cCCEEEEEeCCCeE
Q 011711 304 NPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC---WDQYLLSCSLDNTI 378 (479)
Q Consensus 304 ~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~s~s~dg~i 378 (479)
. +.+.-.-......+.++.+. +..++|++.|+.-..|.+..... +...+.-+.. .+.+.+++-.+-.+
T Consensus 305 ~-y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~ 377 (1113)
T KOG0644|consen 305 I-YVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRL 377 (1113)
T ss_pred c-cCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEe
Confidence 0 00000011123445566664 77899999999998887653221 1111111111 13566777778899
Q ss_pred EEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCc-eE
Q 011711 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDG-LF 456 (479)
Q Consensus 379 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g-~l 456 (479)
++|++.++.....+..|.....++.+ +|-+..+..+++.||...|||+-.+.++.... .+..+..-.||+|| .+
T Consensus 378 ~vwnl~~g~l~H~l~ghsd~~yvLd~----Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~ 453 (1113)
T KOG0644|consen 378 CVWNLYTGQLLHNLMGHSDEVYVLDV----HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSI 453 (1113)
T ss_pred eeeecccchhhhhhcccccceeeeee----cCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceE
Confidence 99999999888888888888777766 47777688889999999999998887766654 47789999999999 88
Q ss_pred EEEcCCCcEEEEEeccCCCC
Q 011711 457 FTGDGTGMLSVWKILAKPNA 476 (479)
Q Consensus 457 ~sg~~dg~v~vw~~~~~~~~ 476 (479)
+....-|.++|.....++..
T Consensus 454 ~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 454 ALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred ecCCCCCceEEeccCCCccc
Confidence 88888899999887665443
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=4.2e-15 Score=148.28 Aligned_cols=202 Identities=15% Similarity=0.232 Sum_probs=139.2
Q ss_pred CCccEEEEEEcCC----EEEEEeCCCcEEEEEccCCCCCcccceeeecCCC-------CCeEEEEEc--CCEEEEEeCCC
Q 011711 270 PVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT-------RPVTCLAVG--GKRLYSGSMDN 336 (479)
Q Consensus 270 ~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~-------~~i~~l~~~--~~~l~sgs~dg 336 (479)
....|..+.+-++ ++++|+.||.|+||+--.....+.+++....+-+ +.=.-+.|. ..+|++++.-.
T Consensus 1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee
Confidence 4567888887655 8999999999999985443212233333322211 111223453 45566666688
Q ss_pred eEEEEECCCCcEEEEEeCCC-CCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcc---eEEeccccCccceEEEeeeeC
Q 011711 337 TIRVWDLDTLEAVMTLNGHT-DAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGN---LEVAYTHNEDHGVLALGGLND 409 (479)
Q Consensus 337 ~I~iwd~~~~~~~~~~~~h~-~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 409 (479)
.|+|||....+++..+...+ ..+++++.+ |+.+++|..||.|++||.+.... +.....|+....++...+.
T Consensus 1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq-- 1265 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ-- 1265 (1387)
T ss_pred EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEee--
Confidence 99999999988888876544 347777776 79999999999999999886543 4445556665344444433
Q ss_pred CCCCcEEEEEeCCCeEEEeecCCCceeeee--ec----cCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 410 PDGNPVLICSCNDDSVHLYELPSFMERGRI--FS----RREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 410 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~----~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
+.|-.-|++|+.||.|++||++.......+ .. .+..++|..+++. .+++|+. +.|+||++...+
T Consensus 1266 ~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1266 RQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred cCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence 444435899999999999999874222222 11 3359999999999 8888888 999999987543
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.1e-15 Score=132.86 Aligned_cols=263 Identities=17% Similarity=0.237 Sum_probs=178.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEecCCce---eEEEe--C-CCEEEEEcCCeEEEEEcCCCceE---EecCCC-ccE
Q 011711 205 DKLYSGSRDGTVQLWDCHTGQSASVINLGAEV---GSLIC--E-GPWVFVGMPNVVKAWHIESSAEF---SLDGPV-GEV 274 (479)
Q Consensus 205 ~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~---~~~~~--~-~~~l~~~~~~~i~v~~~~~~~~~---~~~~~~-~~v 274 (479)
..+|++-..|+|++||..+++.+..+...... ..++. . ..++.++.||.|++||++...+. ....+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 56788888899999999999999888765432 22222 2 23555679999999999987764 233333 456
Q ss_pred EEEEEc--CCEEEEEe----CCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCC
Q 011711 275 YSMVVA--NEMLFAGA----QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDT 345 (479)
Q Consensus 275 ~~~~~~--~~~l~~g~----~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~ 345 (479)
.+++.. ...+++|+ .+-.|.+||++..++. +......|.+.|+++.|+ .++|++||.||.|.+||+..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~---l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL---LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccch---hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 677765 23677765 3667999999987642 344567899999999996 78999999999999999976
Q ss_pred CcE---EEEEeCCCCCcEEEEEcC---CEEEEEeCCCeEEEEEcCCCcceEEeccccCc-------cceEEEeeeeCCCC
Q 011711 346 LEA---VMTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNED-------HGVLALGGLNDPDG 412 (479)
Q Consensus 346 ~~~---~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 412 (479)
... +...-.|...|..+.|.+ +.|.+-+......+|+++.+.+...+...... ..+--+.-..+|.+
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~ 277 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGD 277 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCC
Confidence 432 222234666788888884 36889999999999999887643333222110 00111111123544
Q ss_pred CcEEEEEeC-CCeEEEeecCC---C---ceeeeee--ccCceEEEEECCCc-eEEEEcCCCcEEEEEe
Q 011711 413 NPVLICSCN-DDSVHLYELPS---F---MERGRIF--SRREVRVIETGPDG-LFFTGDGTGMLSVWKI 470 (479)
Q Consensus 413 ~~~l~s~~~-dg~v~iwd~~~---~---~~~~~~~--~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~ 470 (479)
..+.+.++. -+...++-+.. + +.+..+. +..-|+++.|...+ .+.|||+||.+.+|..
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 445555544 56666665542 2 2222222 24558888888777 9999999999999995
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=8.4e-15 Score=143.66 Aligned_cols=250 Identities=15% Similarity=0.156 Sum_probs=168.7
Q ss_pred eEEEeccCC-eeEeCCCCCeEEEeecCCCcee-e----EEEecccccEEEEEeCCC--CCEEEEEeCCCcEEEEECCCCc
Q 011711 154 NVCYHWLSG-NCVKGDECRFWHSWFCGEGFTM-L----AKLEGHKKAVSGIALPLR--SDKLYSGSRDGTVQLWDCHTGQ 225 (479)
Q Consensus 154 ~~c~~~~~~-~~~~g~~d~~i~vw~~~~~~~~-~----~~~~~H~~~V~~l~~s~~--~~~l~s~s~Dg~v~vwd~~~~~ 225 (479)
++++++... .|+.|..+|.|-+||+..+... . .....|..+|+.+.|..+ +.-+++++.||.|..|+++.-.
T Consensus 247 ~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~ 326 (555)
T KOG1587|consen 247 CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLS 326 (555)
T ss_pred EEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccc
Confidence 455555544 6777889999999999865321 1 223458899999999544 3459999999999999876443
Q ss_pred eEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCC
Q 011711 226 SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNT 302 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~ 302 (479)
............ ...........++++.|.+. .+++|+++|.|.--+-....
T Consensus 327 ~P~e~~~~~~~~-------------------------~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 327 LPVEGLLLESKK-------------------------HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cchhhccccccc-------------------------ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 311111000000 00001123345677777644 99999999999873322221
Q ss_pred C---CcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECC-CCcEEEEEeCCCCCcEEEEEc---CCEEEEE
Q 011711 303 Q---NPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLD-TLEAVMTLNGHTDAPMSLLCW---DQYLLSC 372 (479)
Q Consensus 303 ~---~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~v~~~~~~---~~~l~s~ 372 (479)
. ..++....+..|.++|+++.++ ...+++++ |-+++||... ...++..+..+...+.+++|+ ...++++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 1 1124455677889999999997 44555555 9999999988 778888888888889999999 4689999
Q ss_pred eCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 373 SLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 373 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
..||.|.+||+.....-......-. ........++++|+ +|++|...|.+++|++..
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGK-LLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCCceehhhhhccccCCccccccc--ccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence 9999999999976533221111111 12222334457787 999999999999999964
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=6.3e-13 Score=126.89 Aligned_cols=262 Identities=16% Similarity=0.197 Sum_probs=162.5
Q ss_pred eEeCCCCCeEEEeecCCC--ceeeEEEecccccEEEEEeCCCCCEEEEEe-CCCcEEEEECC-CCce--EEEEecCCcee
Q 011711 164 CVKGDECRFWHSWFCGEG--FTMLAKLEGHKKAVSGIALPLRSDKLYSGS-RDGTVQLWDCH-TGQS--ASVINLGAEVG 237 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~--~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s-~Dg~v~vwd~~-~~~~--~~~~~~~~~~~ 237 (479)
.++...++.|++|++.+. .+.+..+. +.+....++++|++++|+.++ .++.|.+|++. +++. ...........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 456677899999999643 23555554 346677899999999987765 57899999997 3432 23333332333
Q ss_pred --EEEeCCCEEEEE--cCCeEEEEEcCCCc----eEEecCCCccEEEEEEcCC--EE-EEEeCCCcEEEEEccCCCCCcc
Q 011711 238 --SLICEGPWVFVG--MPNVVKAWHIESSA----EFSLDGPVGEVYSMVVANE--ML-FAGAQDGNILVWKGIPNTQNPF 306 (479)
Q Consensus 238 --~~~~~~~~l~~~--~~~~i~v~~~~~~~----~~~~~~~~~~v~~~~~~~~--~l-~~g~~dg~i~iwd~~~~~~~~~ 306 (479)
.+.+++++++++ .++.|.+|++++.. .............++++++ ++ ++...++.|.+||+.+......
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 334578888776 47899999997432 1221122234567778877 55 5556679999999976321100
Q ss_pred c--ceeeecCCCCCeEEEEEc--CCEEEEEeC-CCeEEEEECCC--C--cEEEEEeCCCC------CcEEEEE--cCCEE
Q 011711 307 Q--LAALLKGHTRPVTCLAVG--GKRLYSGSM-DNTIRVWDLDT--L--EAVMTLNGHTD------APMSLLC--WDQYL 369 (479)
Q Consensus 307 ~--~~~~~~~h~~~i~~l~~~--~~~l~sgs~-dg~I~iwd~~~--~--~~~~~~~~h~~------~v~~~~~--~~~~l 369 (479)
. ....... ......+.|+ +++++++.. +++|.+||++. + +.+.++..+.. ....+.+ +++++
T Consensus 164 ~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 0 0011111 2334567776 778888776 89999999973 3 33444433211 1223444 47788
Q ss_pred EEEeC-CCeEEEEEcCCCcceEEeccccC---ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC
Q 011711 370 LSCSL-DNTIKVWIMTEEGNLEVAYTHNE---DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 370 ~s~s~-dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 431 (479)
+++.. ++.|.+|++........+..+.. ....+ .++|+|+.++++...+++|.+|+++
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~----~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGF----NIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCce----EECCCCCEEEEEEccCCcEEEEEEc
Confidence 88754 78999999976543222222211 11223 3469999666666669999999875
No 188
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.67 E-value=7.3e-15 Score=126.64 Aligned_cols=270 Identities=16% Similarity=0.155 Sum_probs=180.9
Q ss_pred CCCeEEEeecCCCc--eeeEEEecccccEEEEEeCCCCC-EEEEEeCC-------CcEEEEECCCCceEEEEecCCceeE
Q 011711 169 ECRFWHSWFCGEGF--TMLAKLEGHKKAVSGIALPLRSD-KLYSGSRD-------GTVQLWDCHTGQSASVINLGAEVGS 238 (479)
Q Consensus 169 ~d~~i~vw~~~~~~--~~~~~~~~H~~~V~~l~~s~~~~-~l~s~s~D-------g~v~vwd~~~~~~~~~~~~~~~~~~ 238 (479)
.|..|++-+++.+. -.-..|..|.+.|..|+-+|-.+ .|+|+-.| -.+.||.+..........
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~------- 110 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS------- 110 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccc-------
Confidence 35778887776542 23356777889999999988655 55555432 135577665432110000
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCCceE-Eec-CCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccce-eeec
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESSAEF-SLD-GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLA-ALLK 313 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~~~~-~~~-~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~ 313 (479)
+-+.+ .+. .+.+.|.|+.|.|+ .+++-. |..|.+|++........++. ..-.
T Consensus 111 ----------------------tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~ 167 (370)
T KOG1007|consen 111 ----------------------TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA 167 (370)
T ss_pred ----------------------hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccc
Confidence 00000 111 35568999999998 555544 88999999987754211111 1112
Q ss_pred CCCCCeEEEEEc----CCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCCCcEEEEEcC---CEEEEEeCCCeEEEEEcCC
Q 011711 314 GHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 314 ~h~~~i~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~v~~~~~~~---~~l~s~s~dg~i~iwd~~~ 385 (479)
.+....++-+|+ ++.+++. .|+++..||+++.++...+. +|...|..+.++. .+|++|+.||.|++||.+.
T Consensus 168 e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~ 246 (370)
T KOG1007|consen 168 EMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK 246 (370)
T ss_pred cccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence 345566777775 5666664 68999999999988887774 6777788999883 4799999999999999987
Q ss_pred Cc-ceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc--------------------e---------
Q 011711 386 EG-NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM--------------------E--------- 435 (479)
Q Consensus 386 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--------------------~--------- 435 (479)
.+ ++..+..|..-+.. .-++|.-..++.+|+.|..|.+|...+-. +
T Consensus 247 tk~pv~el~~HsHWvW~----VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~ 322 (370)
T KOG1007|consen 247 TKFPVQELPGHSHWVWA----VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQ 322 (370)
T ss_pred CCccccccCCCceEEEE----EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccc
Confidence 64 44555555554433 34467777799999999999999654311 0
Q ss_pred eeee-eccCceEEEEECCCc--eEEEEcCCCcEEEEEeccC
Q 011711 436 RGRI-FSRREVRVIETGPDG--LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 436 ~~~~-~~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~~ 473 (479)
+.++ .|++.|.+++|+.-. .|++-+.||.+.|=++...
T Consensus 323 l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 323 LETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred cccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 0011 247889999999877 8899999999998776553
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.66 E-value=6.8e-14 Score=133.37 Aligned_cols=261 Identities=11% Similarity=0.156 Sum_probs=190.1
Q ss_pred CCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEec--cCCeeEeCCC
Q 011711 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW--LSGNCVKGDE 169 (479)
Q Consensus 92 ~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~--~~~~~~~g~~ 169 (479)
.|..++|-|||.-|.-+. +..+-|+|..++.. ...+.+|.+..-|..| .+.++++|+.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~l-------------------lqtLKgHKDtVycVAys~dGkrFASG~a 73 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTL-------------------LQPLKGHKDTVYCVAYAKDGKRFASGSA 73 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccc-------------------ccccccccceEEEEEEccCCceeccCCC
Confidence 789999999999887776 55667776544433 2334455555566555 5569999999
Q ss_pred CCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE--eCCCEEE
Q 011711 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVF 247 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~ 247 (479)
|+.+.+|+..-. -+-.+ .|.+.|.|+.|+|-...|+|++.. ..-+|..+... +........+.+.+ .+|.+++
T Consensus 74 DK~VI~W~~klE--G~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~kss~R~~~CsWtnDGqyla 148 (1081)
T KOG1538|consen 74 DKSVIIWTSKLE--GILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLA 148 (1081)
T ss_pred ceeEEEeccccc--ceeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhhhheeEEEeeecCCCcEEE
Confidence 999999997533 12222 599999999999999999999874 46788865432 22233333344433 3889999
Q ss_pred EE-cCCeEEEEEcCCCceEEec---CCCccEEEEEEcCC-------EEEEEeCCCcEEEEEccCCCCCcccceeeecCCC
Q 011711 248 VG-MPNVVKAWHIESSAEFSLD---GPVGEVYSMVVANE-------MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (479)
Q Consensus 248 ~~-~~~~i~v~~~~~~~~~~~~---~~~~~v~~~~~~~~-------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~ 316 (479)
.| .+|+|.+-+-...+....+ +...+|.+++|+|. .+++.....++.+|.+..... ..-+.-.
T Consensus 149 lG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I------gk~r~L~ 222 (1081)
T KOG1538|consen 149 LGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI------GKDRALN 222 (1081)
T ss_pred EeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee------cccccCC
Confidence 88 7899999877666655544 47889999999865 889999999999998865421 1111222
Q ss_pred CCeEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcC
Q 011711 317 RPVTCLAV--GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 317 ~~i~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (479)
-.-.|+.+ +|.+++.|+.|+.+++|- +.|-.+.++......|.++... +++++.|+.||+|..|++.
T Consensus 223 FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 223 FDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 23346665 599999999999999996 5677777777777778877765 7899999999999999764
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=2.3e-16 Score=153.49 Aligned_cols=277 Identities=17% Similarity=0.218 Sum_probs=193.4
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEE--eccCC
Q 011711 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCY--HWLSG 162 (479)
Q Consensus 85 ~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~--~~~~~ 162 (479)
.+.||...|+++.|...|+|+++|++|.-++||..++... +. ...+|.+++.-. .....
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~-------lA------------s~rGhs~ditdlavs~~n~ 245 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC-------LA------------SCRGHSGDITDLAVSSNNT 245 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh-------hc------------cCCCCccccchhccchhhh
Confidence 3489999999999999999999999999999997554332 11 111222232222 22334
Q ss_pred eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeC
Q 011711 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
.+++++.|..|++|.+.++ .++..+.||+++|++|+|+|-. +.+.||++++||..- ......+ .+
T Consensus 246 ~iaaaS~D~vIrvWrl~~~-~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~p--rp------- 310 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDG-APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVP--RP------- 310 (1113)
T ss_pred hhhhcccCceEEEEecCCC-chHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCC--CC-------
Confidence 6778999999999999999 8999999999999999999865 788999999999761 1110000 00
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeE
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~ 320 (479)
... ....-+.++.+..+ .+++|+.|+.-..|.+... ..+...+.
T Consensus 311 ----------------------~~~-~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l-----------~~~~~~li 356 (1113)
T KOG0644|consen 311 ----------------------LKF-TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL-----------AWRSNLLI 356 (1113)
T ss_pred ----------------------CCc-ccccceeeeeccccccccccccCCcccccchhhHh-----------hhhccceE
Confidence 000 01123344444433 7889999998888875432 12222222
Q ss_pred EEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceEEecc
Q 011711 321 CLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (479)
Q Consensus 321 ~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (479)
-+... ..+.+++-.+-.+.+|++.++..++.+.+|...+..+.++ .....+++.||...|||+-.+.+++....
T Consensus 357 f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~ 436 (1113)
T KOG0644|consen 357 FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI 436 (1113)
T ss_pred EEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec
Confidence 12221 4567778888899999999999999999999998888877 45667999999999999988877766653
Q ss_pred ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCc
Q 011711 395 HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFM 434 (479)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 434 (479)
.. .-.+...|+++|. -++....-|.++|.....++
T Consensus 437 gh----~kl~d~kFSqdgt-s~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 437 GH----GKLVDGKFSQDGT-SIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cc----ceeeccccCCCCc-eEecCCCCCceEEeccCCCc
Confidence 22 2234455679988 56666667888888765443
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=2.8e-14 Score=123.22 Aligned_cols=241 Identities=15% Similarity=0.160 Sum_probs=173.0
Q ss_pred cccccEEEEEeCCCC-----CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCce
Q 011711 190 GHKKAVSGIALPLRS-----DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (479)
Q Consensus 190 ~H~~~V~~l~~s~~~-----~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~ 264 (479)
.|.-+++.+.|.|+. ++|||++. .+|+|.+...+....... .+.+.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~-------------------------~L~~~-- 144 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQS-------------------------VLNNN-- 144 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhh-------------------------hhccC--
Confidence 688999999999886 35666653 799999874321111100 00000
Q ss_pred EEecCCCccEEEEEEc---CCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeE
Q 011711 265 FSLDGPVGEVYSMVVA---NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTI 338 (479)
Q Consensus 265 ~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I 338 (479)
....+..+++++.|+ ++++.+.+-|-+..|||+.++.. ......+-+|..+|..++|. -+.|++.+.||.+
T Consensus 145 -kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSv 221 (364)
T KOG0290|consen 145 -KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSV 221 (364)
T ss_pred -cccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc--cceeeEEEecCcceeEEEeccCccceEEEecCCCcE
Confidence 012355678888886 55999999999999999998732 33456688999999999996 4689999999999
Q ss_pred EEEECCCCcEEEEE---eCCCCCcEEEEEc---CCEEEEEeCC-CeEEEEEcCCCc-ceEEeccccCccceEEEeeeeCC
Q 011711 339 RVWDLDTLEAVMTL---NGHTDAPMSLLCW---DQYLLSCSLD-NTIKVWIMTEEG-NLEVAYTHNEDHGVLALGGLNDP 410 (479)
Q Consensus 339 ~iwd~~~~~~~~~~---~~h~~~v~~~~~~---~~~l~s~s~d-g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 410 (479)
++||++..+.-..+ .....+...++++ .+++++-..| ..|.|.|++... .+..+..|...++.+++. |
T Consensus 222 RmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWa----P 297 (364)
T KOG0290|consen 222 RMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWA----P 297 (364)
T ss_pred EEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEec----C
Confidence 99999986643333 2224456778777 4677776655 579999998764 566778899988888886 7
Q ss_pred CCCcEEEEEeCCCeEEEeecCCCce------eeeeeccCceEEEEECCCc--eEEEEcCCCcEEE
Q 011711 411 DGNPVLICSCNDDSVHLYELPSFME------RGRIFSRREVRVIETGPDG--LFFTGDGTGMLSV 467 (479)
Q Consensus 411 ~~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~v~~l~~s~~g--~l~sg~~dg~v~v 467 (479)
.....|++++.|.++.|||+.+.-. +......++|+.+.|++.. .|+.+. +.++.+
T Consensus 298 hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 298 HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred CCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 7777899999999999999987543 2222347899999999755 555554 334444
No 192
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=4.9e-13 Score=127.64 Aligned_cols=301 Identities=18% Similarity=0.205 Sum_probs=191.1
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE--e
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--C 241 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~ 241 (479)
+++-..++.+.+.|..+. +.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.++..+.....+. .
T Consensus 9 ~V~~~~~~~v~viD~~t~-~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATN-KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCC-eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 345667899999999887 8888998765555567899999999999999999999999999999999887766554 5
Q ss_pred CCCEEEEE--cCCeEEEEEcCCCceEEec--------CCCccEEEEEEcCC--EEE-EEeCCCcEEEEEccCCCCCcccc
Q 011711 242 EGPWVFVG--MPNVVKAWHIESSAEFSLD--------GPVGEVYSMVVANE--MLF-AGAQDGNILVWKGIPNTQNPFQL 308 (479)
Q Consensus 242 ~~~~l~~~--~~~~i~v~~~~~~~~~~~~--------~~~~~v~~~~~~~~--~l~-~g~~dg~i~iwd~~~~~~~~~~~ 308 (479)
+|++++++ .++.+.++|.++.+.+... .....+.++..++. .++ +--+.+.|.+.|...... +
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~----~ 163 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN----L 163 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC----E
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc----c
Confidence 99999877 5899999999998875321 13456777766655 444 445558888888766532 1
Q ss_pred eeeecCCCCCeEEEEEc--CCEEEE-EeCCCeEEEEECCCCcEEEEEeC----CCCCcEEEEE-----------cCCEEE
Q 011711 309 AALLKGHTRPVTCLAVG--GKRLYS-GSMDNTIRVWDLDTLEAVMTLNG----HTDAPMSLLC-----------WDQYLL 370 (479)
Q Consensus 309 ~~~~~~h~~~i~~l~~~--~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~----h~~~v~~~~~-----------~~~~l~ 370 (479)
...............|+ ++++++ ...+..|-++|.++++.+..+.. |......+.. .+...+
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEE
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceec
Confidence 11222233455667776 677655 45677999999999988776642 3333322221 123333
Q ss_pred EEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEE---EeCCCeEEEeecCCCceeeeeecc--Cce
Q 011711 371 SCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLIC---SCNDDSVHLYELPSFMERGRIFSR--REV 445 (479)
Q Consensus 371 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s---~~~dg~v~iwd~~~~~~~~~~~~~--~~v 445 (479)
+.-....+.+||..+.+.+..+...... -.+.. +|+++++.+. +...++|.++|.++.+....+... ..+
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t----hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~ 318 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT----HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRV 318 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS---EE------TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--E
T ss_pred ccccCCccccchhhcCeEEEEEECCCCc-ceeec----CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcE
Confidence 3333345667888888777777765554 22222 5999855554 355689999999999887777653 349
Q ss_pred EEEEECCCc--eEEE-EcCCCcEEEEEeccCC
Q 011711 446 RVIETGPDG--LFFT-GDGTGMLSVWKILAKP 474 (479)
Q Consensus 446 ~~l~~s~~g--~l~s-g~~dg~v~vw~~~~~~ 474 (479)
..+.|+++| ..+| -..+|.|.+||..+.+
T Consensus 319 ~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 319 VHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp EEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred eccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 999999999 3334 3444589999987654
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.1e-13 Score=134.38 Aligned_cols=303 Identities=18% Similarity=0.229 Sum_probs=211.1
Q ss_pred eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCC---CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEE
Q 011711 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRS---DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~---~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~ 239 (479)
+.+-+..+..|.||...++ .+++.+.+|..+++.+.+.|.. .++++++.||+|++||...++.++++..+.++..+
T Consensus 29 k~l~~~~~~~V~VyS~~Tg-~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~ 107 (792)
T KOG1963|consen 29 KFLFLCTGNFVKVYSTATG-ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHAL 107 (792)
T ss_pred cEEEEeeCCEEEEEecchH-hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEE
Confidence 3333444589999999999 8888999999999999996654 47889999999999999999999999887776655
Q ss_pred Ee-----CCC-EEEEEcC-------------CeEEEEEcCCCceEE---ecCCCccEEEEEEcCC-EEEEEeCCCcEEEE
Q 011711 240 IC-----EGP-WVFVGMP-------------NVVKAWHIESSAEFS---LDGPVGEVYSMVVANE-MLFAGAQDGNILVW 296 (479)
Q Consensus 240 ~~-----~~~-~l~~~~~-------------~~i~v~~~~~~~~~~---~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iw 296 (479)
.. +-. .+..+.+ ++++-+.+.+..... ...+.. -.++...+. .+.....+..+.+|
T Consensus 108 ~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~ 186 (792)
T KOG1963|consen 108 VYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIY 186 (792)
T ss_pred EechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEE
Confidence 43 111 1112211 111112221111110 111111 234555555 56666667789999
Q ss_pred EccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCC----CcEEEEEeCCCCCcEEEEEc--CCE
Q 011711 297 KGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT----LEAVMTLNGHTDAPMSLLCW--DQY 368 (479)
Q Consensus 297 d~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~----~~~~~~~~~h~~~v~~~~~~--~~~ 368 (479)
+...... ..-....-..|...++|.+++ ++++++|..||.|.+|.--. ......+.-|...|.+++|. |.+
T Consensus 187 ~v~~~~~-~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~ 265 (792)
T KOG1963|consen 187 FVPKHTK-HTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY 265 (792)
T ss_pred Eecccce-eeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce
Confidence 9877541 111222234577778888886 99999999999999995322 22346678899999999998 899
Q ss_pred EEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-------
Q 011711 369 LLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS------- 441 (479)
Q Consensus 369 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------- 441 (479)
|++|+..+.+.+|.+.+++ .+.+......+ ..+..+||+. +.+....|+.|++....+.+....+.+
T Consensus 266 LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I----~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~ 339 (792)
T KOG1963|consen 266 LLSGGREGVLVLWQLETGK-KQFLPRLGSPI----LHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS 339 (792)
T ss_pred EeecccceEEEEEeecCCC-cccccccCCee----EEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence 9999999999999999887 34444444443 3344469998 566667899999999988776666654
Q ss_pred -----cCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 442 -----RREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 442 -----~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
.+-.+.++++|.- .++-.+..|.|++||+.+..
T Consensus 340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred ccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 2336778999944 88888999999999987653
No 194
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.1e-14 Score=130.42 Aligned_cols=255 Identities=11% Similarity=0.085 Sum_probs=175.0
Q ss_pred eEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCce
Q 011711 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (479)
Q Consensus 185 ~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~ 264 (479)
.+.+.+|.+.|.+|.|+.++++|++|+.|..+++|+++..-..++ .+.
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~--------------------------------~KP 96 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT--------------------------------PKP 96 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC--------------------------------CCC
Confidence 345678999999999999999999999999999999864211111 111
Q ss_pred --EEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeE
Q 011711 265 --FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTI 338 (479)
Q Consensus 265 --~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I 338 (479)
+.-..|...|.+++|.-. .+++|..+++|...|+.+.+. --+..-....+.|+.+..+ .+.|++.+.++.|
T Consensus 97 I~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qs---i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V 173 (609)
T KOG4227|consen 97 IGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQS---IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLV 173 (609)
T ss_pred ceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccccee---eeeecccCcccceeecccCCCCceEEEEecCceE
Confidence 122346688999999855 999999999999999988653 0111222334589988887 8899999999999
Q ss_pred EEEECCCCc-EEE--EEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccce---EEEeeeeC
Q 011711 339 RVWDLDTLE-AVM--TLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGV---LALGGLND 409 (479)
Q Consensus 339 ~iwd~~~~~-~~~--~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 409 (479)
.+||.+..+ .+. .+........++.|. +.+|++.+..+-+-+||.+........+........ --+...|+
T Consensus 174 ~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~ 253 (609)
T KOG4227|consen 174 SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS 253 (609)
T ss_pred EEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence 999998754 221 112222334555565 578999999999999999876533222221111111 11455678
Q ss_pred CCCCcEEEEEeCCCeEEEeecCCCce-eeeeec-------cCceEEEEECCCceEEEEcCCCcEEEEEeccCCC
Q 011711 410 PDGNPVLICSCNDDSVHLYELPSFME-RGRIFS-------RREVRVIETGPDGLFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 410 ~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~-------~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~~~ 475 (479)
|+|..+++.- ....-.+||+-+..+ +.+..| ...+.+++|..|..+++|+.+-.|++|.+...+.
T Consensus 254 ~~G~Q~msiR-R~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 254 PSGNQFMSIR-RGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred CCCCeehhhh-ccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCcc
Confidence 9998555443 344455677766332 333332 2457889998887999999999999999976543
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=9.2e-14 Score=120.06 Aligned_cols=221 Identities=14% Similarity=0.190 Sum_probs=161.1
Q ss_pred CCeEEEEEc--CCCceEEe--cCCCccEEEEEEcCC-------EEEEEeCCCcEEEEEccCCCCCcccceeee-----cC
Q 011711 251 PNVVKAWHI--ESSAEFSL--DGPVGEVYSMVVANE-------MLFAGAQDGNILVWKGIPNTQNPFQLAALL-----KG 314 (479)
Q Consensus 251 ~~~i~v~~~--~~~~~~~~--~~~~~~v~~~~~~~~-------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-----~~ 314 (479)
.+.|.+..+ ++++.... ..|..+++.+.|.|+ +||+. +-.+++|.+...... .++...+ ..
T Consensus 72 ~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~-~~~~~~L~~~kns~ 148 (364)
T KOG0290|consen 72 NNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESR-VELQSVLNNNKNSE 148 (364)
T ss_pred CCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCc-eehhhhhccCcccc
Confidence 455555444 34444332 368888999999877 34333 347999998753221 2222222 34
Q ss_pred CCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCc---EEEEEeCCCCCcEEEEEcC---CEEEEEeCCCeEEEEEcCC
Q 011711 315 HTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLE---AVMTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 315 h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~iwd~~~ 385 (479)
+..+++++.|+ .+++.+.+-|-+..|||++++. ....+.+|...|..++|.. +.+++.+.||.+|+||++.
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence 56799999997 7899999999999999999863 3667889999999999983 6899999999999999998
Q ss_pred CcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCC-CeEEEeecCCC-ceeeeee-ccCceEEEEECCCc--eEEEEc
Q 011711 386 EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND-DSVHLYELPSF-MERGRIF-SRREVRVIETGPDG--LFFTGD 460 (479)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~-~~~~~~~-~~~~v~~l~~s~~g--~l~sg~ 460 (479)
.+....++...... ...+.+.|++....++++-..| ..|.|.|++.. ..+.++. |.+.|+.++|.|.. .|+|+|
T Consensus 229 leHSTIIYE~p~~~-~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG 307 (364)
T KOG0290|consen 229 LEHSTIIYEDPSPS-TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG 307 (364)
T ss_pred cccceEEecCCCCC-CcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence 87666666554422 2233445566666677765544 56999999764 3344444 68899999999987 999999
Q ss_pred CCCcEEEEEeccCCC
Q 011711 461 GTGMLSVWKILAKPN 475 (479)
Q Consensus 461 ~dg~v~vw~~~~~~~ 475 (479)
+|..+.+||+..-..
T Consensus 308 DD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 308 DDCQALIWDLQQMPR 322 (364)
T ss_pred CcceEEEEecccccc
Confidence 999999999987655
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=3.3e-13 Score=120.46 Aligned_cols=222 Identities=14% Similarity=0.184 Sum_probs=172.0
Q ss_pred CCCEEEEEcCCeEEEEEcCCCceE-EecCCCccEEEEEEcCCEEEEEeCCCc--EEEEEccCCCCCcccceeeecCCCCC
Q 011711 242 EGPWVFVGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGN--ILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 242 ~~~~l~~~~~~~i~v~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
+...|..|.....++|+.+..... ........|..+-|+..+++..+.+.. +++++...... +..+ ....+
T Consensus 16 d~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~-----ICe~-~fpt~ 89 (391)
T KOG2110|consen 16 DSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTT-----ICEI-FFPTS 89 (391)
T ss_pred ceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCce-----EEEE-ecCCc
Confidence 445666777778888887765543 233445567788888887776665543 88888766532 2222 24568
Q ss_pred eEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeC---CCCCcEEEEEc--CCEEEEEe--CCCeEEEEEcCCCcceEE
Q 011711 319 VTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNG---HTDAPMSLLCW--DQYLLSCS--LDNTIKVWIMTEEGNLEV 391 (479)
Q Consensus 319 i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~v~~~~~~--~~~l~s~s--~dg~i~iwd~~~~~~~~~ 391 (479)
|.++.++.+.|+++=.+. |+|||+++.++++++.. +...+.+++++ +.+++--+ ..|.|.+||..+-+....
T Consensus 90 IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~ 168 (391)
T KOG2110|consen 90 ILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNT 168 (391)
T ss_pred eEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeE
Confidence 999999988888876655 99999999999998864 44456777777 44777433 368999999999999999
Q ss_pred eccccCccceEEEeeeeCCCCCcEEEEEeCCCe-EEEeecCCCceeeeeec---cCceEEEEECCCc-eEEEEcCCCcEE
Q 011711 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS-VHLYELPSFMERGRIFS---RREVRVIETGPDG-LFFTGDGTGMLS 466 (479)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~---~~~v~~l~~s~~g-~l~sg~~dg~v~ 466 (479)
+..|.....++++ +++|. +||+++..|+ ||+|.+++++.+.++.. ...|.+++|+|++ +|++.+..++|+
T Consensus 169 I~aH~~~lAalaf----s~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 169 INAHKGPLAALAF----SPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred EEecCCceeEEEE----CCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence 9999998888877 59998 9999999887 79999999999988875 5668999999999 999999999999
Q ss_pred EEEeccCCC
Q 011711 467 VWKILAKPN 475 (479)
Q Consensus 467 vw~~~~~~~ 475 (479)
+|+++....
T Consensus 244 iFKL~~~~~ 252 (391)
T KOG2110|consen 244 IFKLEKVSN 252 (391)
T ss_pred EEEeccccc
Confidence 999987543
No 197
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.62 E-value=2.2e-12 Score=125.49 Aligned_cols=295 Identities=16% Similarity=0.126 Sum_probs=194.9
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeE--
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS-- 238 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~-- 238 (479)
.+.+..++.++.+..+|..++ +.+..++-......... .++..++.++.|+.+..+|..+|+.+........+.+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETG-KRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCC-cEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 567778888899999999888 66665554433222232 2467888899999999999999999888776654432
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccE------EEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccce-ee
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEV------YSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLA-AL 311 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v------~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~ 311 (479)
+..++.+++...++.+..+|.++++..-........ .+....++.++++..+|.+..+|..++... ++.. ..
T Consensus 142 ~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~-W~~~~~~ 220 (377)
T TIGR03300 142 LVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPL-WEQRVAL 220 (377)
T ss_pred EEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEe-eeecccc
Confidence 223555556668899999999988765322111111 122333457888889999999998877531 1100 00
Q ss_pred ecCCCC-----Ce-EEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCC
Q 011711 312 LKGHTR-----PV-TCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 312 ~~~h~~-----~i-~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~ 385 (479)
..+... .+ .+..+.++.+++++.+|.++.+|.++++.+...... ........+..++.++.||.+..+|..+
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAVDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceEeCCEEEEECCCCeEEEEECCC
Confidence 000000 01 122234778888999999999999999988777622 2234445688899999999999999988
Q ss_pred CcceEEeccccCc-cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccC-ceEEEEECCCceEEEEcCCC
Q 011711 386 EGNLEVAYTHNED-HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRR-EVRVIETGPDGLFFTGDGTG 463 (479)
Q Consensus 386 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~v~~l~~s~~g~l~sg~~dg 463 (479)
++.+......... .....+ .+. .+++++.+|.|+++|..+++.+.++.... .+..--...++.|+.++.||
T Consensus 299 G~~~W~~~~~~~~~~ssp~i------~g~-~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG 371 (377)
T TIGR03300 299 GSELWKNDELKYRQLTAPAV------VGG-YLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDG 371 (377)
T ss_pred CcEEEccccccCCccccCEE------ECC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCc
Confidence 8765443221111 111111 233 67778899999999999999998887533 33332222345788888999
Q ss_pred cEEEE
Q 011711 464 MLSVW 468 (479)
Q Consensus 464 ~v~vw 468 (479)
.|..|
T Consensus 372 ~l~~~ 376 (377)
T TIGR03300 372 DLYAF 376 (377)
T ss_pred eEEEe
Confidence 99876
No 198
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=4.2e-12 Score=111.39 Aligned_cols=274 Identities=13% Similarity=0.181 Sum_probs=189.1
Q ss_pred cEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe---cCCceeEEEeCCCEEE-EEc-------CCeEEEEEcCCC
Q 011711 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN---LGAEVGSLICEGPWVF-VGM-------PNVVKAWHIESS 262 (479)
Q Consensus 194 ~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~-~~~-------~~~i~v~~~~~~ 262 (479)
...+++|+.|..-++.|..+| .+||+++.-+....-. .+-.+..+.+..++++ +|+ .+.+.+||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 344599999998888888776 8999987644322221 2222333444455544 332 258999997777
Q ss_pred ceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeec--CCCCCeEEEEEc-C-CEEEE-EeCCCe
Q 011711 263 AEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLK--GHTRPVTCLAVG-G-KRLYS-GSMDNT 337 (479)
Q Consensus 263 ~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--~h~~~i~~l~~~-~-~~l~s-gs~dg~ 337 (479)
.++....-..+|.++.+.++.|++.- .+.|++|....+.. .+..+. .....+.+++.. + .+|+. |-.-|.
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k----~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPK----LLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChh----heeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 77766677889999999999888876 45899999876532 233222 223446666664 3 33433 556799
Q ss_pred EEEEECCCCcE--EEEEeCCCCCcEEEEEc--CCEEEEEeCCCe-EEEEEcCCCcceEEeccccCccceEEEeeeeCCCC
Q 011711 338 IRVWDLDTLEA--VMTLNGHTDAPMSLLCW--DQYLLSCSLDNT-IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDG 412 (479)
Q Consensus 338 I~iwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (479)
|+|-|+...+. -..+.+|.+.|.+++.. |..++++|..|+ |||||..+++.+.++........ ..++.++|+.
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~--iy~iaFSp~~ 238 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD--IYCIAFSPNS 238 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe--EEEEEeCCCc
Confidence 99999987665 47889999999999888 899999999996 78999999998888765443322 3333457998
Q ss_pred CcEEEEEeCCCeEEEeecCCCceeee--------------ee-----------ccCceEEEEECCC-ceEEEEcCCCcEE
Q 011711 413 NPVLICSCNDDSVHLYELPSFMERGR--------------IF-----------SRREVRVIETGPD-GLFFTGDGTGMLS 466 (479)
Q Consensus 413 ~~~l~s~~~dg~v~iwd~~~~~~~~~--------------~~-----------~~~~v~~l~~s~~-g~l~sg~~dg~v~ 466 (479)
. +|+++|+.|+++||.+........ +. ..+....++|..+ ..++..+.||.-+
T Consensus 239 s-~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~ 317 (346)
T KOG2111|consen 239 S-WLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYY 317 (346)
T ss_pred c-EEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEE
Confidence 8 899999999999998865321111 10 1345566777777 3677777788877
Q ss_pred EEEeccCCCC
Q 011711 467 VWKILAKPNA 476 (479)
Q Consensus 467 vw~~~~~~~~ 476 (479)
=+.+...+..
T Consensus 318 k~~f~~~~~g 327 (346)
T KOG2111|consen 318 KFKFDPKNGG 327 (346)
T ss_pred EEEecccccc
Confidence 6666655433
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=9.2e-15 Score=136.31 Aligned_cols=238 Identities=18% Similarity=0.227 Sum_probs=158.5
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCC
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS 262 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~ 262 (479)
.+.+.+.||++-|.++.|+.+|.+|++||.|-.+.|||.-..+.+..+.
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~------------------------------- 89 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS------------------------------- 89 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-------------------------------
Confidence 4567799999999999999999999999999999999998877776654
Q ss_pred ceEEecCCCccEEEEEEcCC----EEEEEeCCCcEEEEEccCCCC-----CcccceeeecCCCCCeEEEEEc---CCEEE
Q 011711 263 AEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQ-----NPFQLAALLKGHTRPVTCLAVG---GKRLY 330 (479)
Q Consensus 263 ~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~-----~~~~~~~~~~~h~~~i~~l~~~---~~~l~ 330 (479)
.+|...|.++.|-|. ++++|..|..|+++|+...+. ...+....+..|...|.-|+.. .+.+.
T Consensus 90 -----TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfw 164 (758)
T KOG1310|consen 90 -----TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFW 164 (758)
T ss_pred -----cccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEE
Confidence 468899999999765 899999999999999985321 1133455677888888888884 47899
Q ss_pred EEeCCCeEEEEECCCCcEE-E---------EEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceEEeccccC
Q 011711 331 SGSMDNTIRVWDLDTLEAV-M---------TLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE 397 (479)
Q Consensus 331 sgs~dg~I~iwd~~~~~~~-~---------~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 397 (479)
++++||+|+-+|++....- . .+...--...++..+ +.+|+.|+.|-..++||.+...+ .+. .
T Consensus 165 sasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lk--s~~---s 239 (758)
T KOG1310|consen 165 SASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLK--SFR---S 239 (758)
T ss_pred EecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhcc--CCC---C
Confidence 9999999999999863210 0 111111123444444 57899999999999999643211 110 0
Q ss_pred ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCce-eeeeec-cCceEEEEECCCc--eEEEEcCCCcEEEEEeccC
Q 011711 398 DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFME-RGRIFS-RREVRVIETGPDG--LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~-~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~~ 473 (479)
......+ |.. .++.|+-|-....+. ...+.. ...++-+.|+|+| +|++-+. -.|+++++..+
T Consensus 240 -~~~~~~~----pp~--------~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~g-EhVYlfdvn~~ 305 (758)
T KOG1310|consen 240 -DGTMNTC----PPK--------DCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGG-EHVYLFDVNED 305 (758)
T ss_pred -CccccCC----CCc--------ccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCC-eEEEEEeecCC
Confidence 0111110 110 122222222211100 000111 2346788999999 5555444 47999999876
Q ss_pred CC
Q 011711 474 PN 475 (479)
Q Consensus 474 ~~ 475 (479)
+.
T Consensus 306 ~~ 307 (758)
T KOG1310|consen 306 KS 307 (758)
T ss_pred CC
Confidence 54
No 200
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=132.80 Aligned_cols=293 Identities=16% Similarity=0.120 Sum_probs=202.4
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCC--eEEEeccC
Q 011711 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWLS 161 (479)
Q Consensus 84 ~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~~~~~ 161 (479)
..+.+|++-|+.+.|+..|..|+|||+|-.+.+|+-.....-. +.. .+|... ..-|.+..
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l-----------~f~-------SGH~~NvfQaKFiP~s 197 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKL-----------SFE-------SGHCNNVFQAKFIPFS 197 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCccc-----------ccc-------cccccchhhhhccCCC
Confidence 3668999999999999999999999999999999644432210 000 011100 11133333
Q ss_pred --CeeEeCCCCCeEEEeecCCC-c-eeeEEEecccccEEEEEeCCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCce
Q 011711 162 --GNCVKGDECRFWHSWFCGEG-F-TMLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAEV 236 (479)
Q Consensus 162 --~~~~~g~~d~~i~vw~~~~~-~-~~~~~~~~H~~~V~~l~~s~~~~-~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~ 236 (479)
..+++.+.||.+++=.+... . +....+..|.++|..++.-|+.. -|.|++.|+.+.-.|+..+.....+..
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c---- 273 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC---- 273 (559)
T ss_pred CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee----
Confidence 37889999999999877543 2 22456778999999999988754 599999999999999887765443320
Q ss_pred eEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCC---ccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCC------
Q 011711 237 GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPV---GEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQN------ 304 (479)
Q Consensus 237 ~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~---~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~------ 304 (479)
...+. -..++++.+|. .+++|+.|..+++||.+.-...
T Consensus 274 ------------------------------r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~ 323 (559)
T KOG1334|consen 274 ------------------------------READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVL 323 (559)
T ss_pred ------------------------------eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchh
Confidence 00111 23456666654 8999999999999998654321
Q ss_pred -cccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCC--C----------cEEEE-EeCCCC--CcEEEEEcC
Q 011711 305 -PFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT--L----------EAVMT-LNGHTD--APMSLLCWD 366 (479)
Q Consensus 305 -~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~--~----------~~~~~-~~~h~~--~v~~~~~~~ 366 (479)
.+-+........-.|+|++++ +.-++++..|-.|+++.-.. + ..++. +++|.. .|..+.|+|
T Consensus 324 ~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG 403 (559)
T KOG1334|consen 324 DKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG 403 (559)
T ss_pred hhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeecc
Confidence 011111122334579999997 66778888899999995432 2 23333 788865 478888885
Q ss_pred ---CEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCC
Q 011711 367 ---QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSF 433 (479)
Q Consensus 367 ---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 433 (479)
.|+++|+.=|.|.||+-.+.+.+..+.+...-+ -++-.+|--. +||+++-|..|+||...+.
T Consensus 404 PrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VV----NCLEpHP~~P-vLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 404 PRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVV----NCLEPHPHLP-VLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred CccceEEecCccceEEEEecchhHHHHHhhcccceE----eccCCCCCCc-hhhccCCccceeeecCCcc
Confidence 799999999999999998887776665544422 2333345554 9999999999999987443
No 201
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=6.4e-15 Score=134.77 Aligned_cols=256 Identities=16% Similarity=0.188 Sum_probs=200.0
Q ss_pred cEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe--CCCEEEEEcCCeEEEEEcCCCceEEecCCC
Q 011711 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC--EGPWVFVGMPNVVKAWHIESSAEFSLDGPV 271 (479)
Q Consensus 194 ~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~ 271 (479)
.-..+.++.+|++|+.|+.-|.|-.+|..+++....+.....+..+.+ +..++++...+-+.+||-...+..-+. ..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk-~~ 209 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLK-RH 209 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehh-hc
Confidence 345688899999999999999999999999999999988887776654 777888999999999998766654444 44
Q ss_pred ccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCc
Q 011711 272 GEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLE 347 (479)
Q Consensus 272 ~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 347 (479)
..|..+.|.|- +|++++..|.+..-|+.++.. +..+..-.+.+..+.-+ +..+-+|...|+|.+|...+.+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl-----Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL-----VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhh-----hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 67888999988 788889999999999998753 66666677778888877 6778899999999999999999
Q ss_pred EEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeE
Q 011711 348 AVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSV 425 (479)
Q Consensus 348 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v 425 (479)
++..+..|.++|.+++++ |.++++.+.|..++|||++....+..... ..+...++++ ..| +|+.+ ....|
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~S----qkg--lLA~~-~G~~v 356 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLS----QKG--LLALS-YGDHV 356 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccc----ccc--ceeee-cCCee
Confidence 999999999999999998 89999999999999999998876666655 3334445552 333 45554 56689
Q ss_pred EEeec-CCC---ceeeeeec--cCceEEEEECCCc-eEEEEcCCC
Q 011711 426 HLYEL-PSF---MERGRIFS--RREVRVIETGPDG-LFFTGDGTG 463 (479)
Q Consensus 426 ~iwd~-~~~---~~~~~~~~--~~~v~~l~~s~~g-~l~sg~~dg 463 (479)
.||.- -.+ ....-+.| .+.|..+.|.|-. .|-.|-..|
T Consensus 357 ~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 357 QIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred eeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 99952 221 11112223 5689999999965 555444443
No 202
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.60 E-value=8.7e-12 Score=119.04 Aligned_cols=263 Identities=13% Similarity=0.232 Sum_probs=158.3
Q ss_pred EEEEeCCCcEEEEECCC-Cc--eEEEEecCCce--eEEEeCCCEEEEE--cCCeEEEEEcCC-CceE--EecCCCccEEE
Q 011711 207 LYSGSRDGTVQLWDCHT-GQ--SASVINLGAEV--GSLICEGPWVFVG--MPNVVKAWHIES-SAEF--SLDGPVGEVYS 276 (479)
Q Consensus 207 l~s~s~Dg~v~vwd~~~-~~--~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~i~v~~~~~-~~~~--~~~~~~~~v~~ 276 (479)
.++...|+.|.+||+.+ ++ .+..+...... ..+.+++++|+++ .++.|.+|+++. +... ......+....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 34446789999999964 33 44555543333 3445688888765 468899999973 3321 11122335667
Q ss_pred EEEcCC--EEEEEe-CCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEE-EeCCCeEEEEECCCCcEEE
Q 011711 277 MVVANE--MLFAGA-QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYS-GSMDNTIRVWDLDTLEAVM 350 (479)
Q Consensus 277 ~~~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~s-gs~dg~I~iwd~~~~~~~~ 350 (479)
+.++++ .+++++ .++.|.+|++.+.... .+....+. +.....+++++ ++++++ ...++.|.+||+++...+.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~-~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIP-VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCC-CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 888877 555554 5899999999643211 11222222 22335566665 667755 4567999999998743221
Q ss_pred -------EEeCCCCCcEEEEEc--CCEEEEEeC-CCeEEEEEcCCC-cce---EEeccccC--ccceEEEeeeeCCCCCc
Q 011711 351 -------TLNGHTDAPMSLLCW--DQYLLSCSL-DNTIKVWIMTEE-GNL---EVAYTHNE--DHGVLALGGLNDPDGNP 414 (479)
Q Consensus 351 -------~~~~h~~~v~~~~~~--~~~l~s~s~-dg~i~iwd~~~~-~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~ 414 (479)
.... ......+.++ +++++++.. ++.|.+|+++.. ..+ ..+..... ........+.++|+++.
T Consensus 163 ~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred ccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 1111 2234455655 678877776 899999999742 122 22211111 11112223445799985
Q ss_pred EEEEEeCCCeEEEeecCCCce----eeeeeccCceEEEEECCCc-eEEEEc-CCCcEEEEEecc
Q 011711 415 VLICSCNDDSVHLYELPSFME----RGRIFSRREVRVIETGPDG-LFFTGD-GTGMLSVWKILA 472 (479)
Q Consensus 415 ~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~l~~s~~g-~l~sg~-~dg~v~vw~~~~ 472 (479)
++++...++.|.+|++..... ...+........+.++|+| +|+++. .+++|.+|+++.
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 555445678999999865432 2222224456789999999 665544 599999999864
No 203
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.59 E-value=1.9e-13 Score=123.36 Aligned_cols=174 Identities=19% Similarity=0.294 Sum_probs=125.3
Q ss_pred CCCCCCCCCCCce-eccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCC
Q 011711 91 KSPPSYNCPKNNV-RVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDE 169 (479)
Q Consensus 91 ~~i~~~~~s~~g~-~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~ 169 (479)
.++.++.|.+++. .+|||+.|..||||....... . +.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~---~--------~~------------------------------- 51 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEP---G--------GG------------------------------- 51 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCC---C--------CC-------------------------------
Confidence 3557777766666 899998899999995443221 0 00
Q ss_pred CCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEE
Q 011711 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVG 249 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (479)
+.. .+.+..|..|..+|+.+.|+|+|++||||+.+|.|.+|....-... ....+
T Consensus 52 ~~~---------V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~e-------------- 105 (434)
T KOG1009|consen 52 DMK---------VEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF---DADTE-------------- 105 (434)
T ss_pred cee---------EEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc---cccch--------------
Confidence 001 1567788999999999999999999999999999999987641110 00000
Q ss_pred cCCeEEEEEcCCC---ceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEE
Q 011711 250 MPNVVKAWHIESS---AEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV 324 (479)
Q Consensus 250 ~~~~i~v~~~~~~---~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~ 324 (479)
-+.... ......+|...++.++|.++ .+++++.|+.+++||+..+. ....+..|...+..++|
T Consensus 106 -------~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-----l~~~~~dh~~yvqgvaw 173 (434)
T KOG1009|consen 106 -------ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-----LLAILDDHEHYVQGVAW 173 (434)
T ss_pred -------hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-----eEeeccccccccceeec
Confidence 000000 01345679999999999988 89999999999999999875 47778889999999999
Q ss_pred c--CCEEEEEeCCCeEEEEECC
Q 011711 325 G--GKRLYSGSMDNTIRVWDLD 344 (479)
Q Consensus 325 ~--~~~l~sgs~dg~I~iwd~~ 344 (479)
+ ++++++-+.|...+.+++.
T Consensus 174 Dpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 174 DPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred chhhhhhhhhccCcccceeeee
Confidence 7 7778887777766665543
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.59 E-value=1.1e-13 Score=128.88 Aligned_cols=252 Identities=14% Similarity=0.174 Sum_probs=182.1
Q ss_pred cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCc-e------eEEE-----eCCCEEEEEcCCeEEEE
Q 011711 190 GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE-V------GSLI-----CEGPWVFVGMPNVVKAW 257 (479)
Q Consensus 190 ~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~-~------~~~~-----~~~~~l~~~~~~~i~v~ 257 (479)
-|...|.++.|+.+...+.+++.+..++-||+.+.. ......... + .... ....+++++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 466777899998888777766665555555554432 222222111 1 1111 13347778899999999
Q ss_pred EcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEE
Q 011711 258 HIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSG 332 (479)
Q Consensus 258 ~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sg 332 (479)
+-....+.....|.+.+.+-.|+++ -|+++++||.|++|.-..- +..++.....+|.|++|. .+.+++.
T Consensus 91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM------LRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM------LRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch------HHHHHhhcCceeEEEEECCCCCceEEec
Confidence 8887777888899999999999998 8999999999999984321 234455567899999996 4555554
Q ss_pred eCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCC
Q 011711 333 SMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDP 410 (479)
Q Consensus 333 s~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (479)
.+.+.|=.+.....+-..++|.+-|.++.|+ ++.+++|++|-..++||.. +..+.....|..++..+++ +|
T Consensus 165 --g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~----np 237 (737)
T KOG1524|consen 165 --GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAF----NP 237 (737)
T ss_pred --CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeee----cc
Confidence 4667777777777788899999999999998 7899999999999999975 4555555666677666666 58
Q ss_pred CCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEE
Q 011711 411 DGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVW 468 (479)
Q Consensus 411 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw 468 (479)
+ + .++.++. ++.++ .-...+.|..++||+|| .++.|...|.|.+=
T Consensus 238 d-~-~~~v~S~-nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 238 E-K-DYLLWSY-NTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred c-c-ceeeeee-eeeee----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 8 4 4555543 34441 11235789999999999 99999999987653
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4.9e-14 Score=127.92 Aligned_cols=196 Identities=19% Similarity=0.181 Sum_probs=140.6
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
..+|+...++.+++|+.||++|||+.... ..+.....|.+.|.++.|+|||++|++-+.| ..+||+.++|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 57888888899999999999999997666 5667778899999999999999999999999 999999999965544331
Q ss_pred CCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC------EEEE-EeCCCcEEEEEccCCCCCc
Q 011711 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE------MLFA-GAQDGNILVWKGIPNTQNP 305 (479)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~------~l~~-g~~dg~i~iwd~~~~~~~~ 305 (479)
.. .......+.|..+ ++++ ...-+.|..||+..-....
T Consensus 226 ~~-----------------------------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~ 270 (398)
T KOG0771|consen 226 FS-----------------------------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN 270 (398)
T ss_pred cc-----------------------------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence 10 0011111222111 1222 2233445555543322111
Q ss_pred ccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCCCcEEEEEc--CCEEEEEeCCCeEEE
Q 011711 306 FQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL-NGHTDAPMSLLCW--DQYLLSCSLDNTIKV 380 (479)
Q Consensus 306 ~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~i 380 (479)
+-...........|.+++.+ |++++.|+.||.|-|++..+.+.++-. +.|...|+.+.|. .+++++.+.|..+.+
T Consensus 271 ~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 271 FLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred ccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 11222223334578999996 999999999999999999998887665 5788999999998 578888899998888
Q ss_pred EEcCC
Q 011711 381 WIMTE 385 (479)
Q Consensus 381 wd~~~ 385 (479)
..+.-
T Consensus 351 ~~l~v 355 (398)
T KOG0771|consen 351 TKLAV 355 (398)
T ss_pred EEEee
Confidence 87654
No 206
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=8.7e-13 Score=124.03 Aligned_cols=273 Identities=12% Similarity=0.118 Sum_probs=189.5
Q ss_pred cccccEEEEEeCCCCCEEE-EEeCCCcEEEEECCCCceEEEEecCCceeEEEe----CCCEEEEEcCCeEEEEEcCCCce
Q 011711 190 GHKKAVSGIALPLRSDKLY-SGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC----EGPWVFVGMPNVVKAWHIESSAE 264 (479)
Q Consensus 190 ~H~~~V~~l~~s~~~~~l~-s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~i~v~~~~~~~~ 264 (479)
+|...-+.|..+|||+|++ ||..--.|++||+..-.....-.+..++..+.+ -.+.++...|..|.+-.- .+..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCee
Confidence 4778889999999999854 566678999999987766655555565555443 123344445555443221 1111
Q ss_pred EEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEE
Q 011711 265 FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRV 340 (479)
Q Consensus 265 ~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~i 340 (479)
.... ....-..|+++.- -|+.++....|+-+++..+.- +..+....+.++++..+ ..+|++|+.+|.|..
T Consensus 128 y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf-----L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 128 YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF-----LNPFETDSGELNVVSINEEHGLLACGTEDGVVEF 201 (703)
T ss_pred eeee-cCcCCccccccCCCccEEEeecCcceEEEEcccccc-----ccccccccccceeeeecCccceEEecccCceEEE
Confidence 1111 0111223444322 455555566788899888753 45566667889999997 788999999999999
Q ss_pred EECCCCcEEEEEeC------CCC-----CcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeee
Q 011711 341 WDLDTLEAVMTLNG------HTD-----APMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGL 407 (479)
Q Consensus 341 wd~~~~~~~~~~~~------h~~-----~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (479)
||.++...+.++.. |.+ .|+++.|. |=.+++|..+|.+.|||++..+++. ...|........+.+.
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQ 280 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeeccc
Confidence 99998877766642 322 38899998 4579999999999999999887654 3445554444444433
Q ss_pred eCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 408 NDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 408 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
.. +++..+++. ....++|||-.+++....+.....+..+++-|++ +++++-+++.+..|=+..
T Consensus 281 ~~-~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 281 DT-DQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cc-CCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 33 333355544 5678999999999999999988889999999998 999999999888776654
No 207
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.58 E-value=2.6e-14 Score=135.41 Aligned_cols=231 Identities=19% Similarity=0.216 Sum_probs=164.0
Q ss_pred eCCCCCeEEEeecCCCceee-EEEec--ccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe
Q 011711 166 KGDECRFWHSWFCGEGFTML-AKLEG--HKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~-~~~~~--H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 241 (479)
-.+..|.|-||++....++- ..+.+ ....|+++.|.| |...|+.++.||.|++|.+..+.......
T Consensus 598 L~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~---------- 667 (1012)
T KOG1445|consen 598 LAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM---------- 667 (1012)
T ss_pred ecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC----------
Confidence 34567999999997542221 11221 457799999988 67789999999999999998765432221
Q ss_pred CCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 242 ~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
..+..+..|...|+++.|+|= .|++++.|-+|++||+.+... ...+.+|.+.
T Consensus 668 --------------------tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-----~~~l~gHtdq 722 (1012)
T KOG1445|consen 668 --------------------TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-----YSRLVGHTDQ 722 (1012)
T ss_pred --------------------CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-----hheeccCcCc
Confidence 112345578899999999975 999999999999999998653 6778999999
Q ss_pred eEEEEEc--CCEEEEEeCCCeEEEEECCCCc-EEEEEeCCC---CCcEEEEEcCCEEEEEeCC----CeEEEEEcCCCcc
Q 011711 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLE-AVMTLNGHT---DAPMSLLCWDQYLLSCSLD----NTIKVWIMTEEGN 388 (479)
Q Consensus 319 i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~h~---~~v~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~ 388 (479)
|..++|+ |..+++.+.||+|++|+.++++ .++.-++.. +.-.-.+++|.++++.+.| .+|.+||..+-..
T Consensus 723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~ 802 (1012)
T KOG1445|consen 723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL 802 (1012)
T ss_pred eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC
Confidence 9999997 9999999999999999998764 344333322 2223444568888887765 4678887754321
Q ss_pred eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 389 LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
..++...-.+....+...+++|...++++|-.|..|.+|.+-.
T Consensus 803 -~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 803 -RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred -CcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 1111111112222333455788888999999999999998754
No 208
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.58 E-value=1.2e-13 Score=122.13 Aligned_cols=329 Identities=20% Similarity=0.243 Sum_probs=221.7
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeE
Q 011711 86 VSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCV 165 (479)
Q Consensus 86 ~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 165 (479)
.+||.+.++..-.-|...-+.+.++|.++|||-..+.++.+|+..+.. ........+......++
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m---------------P~~~~~~~y~~e~~~L~ 84 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM---------------PSPCSAMEYVSESRRLY 84 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC---------------CCCceEeeeeccceEEE
Confidence 389999988888877778899999999999998888887777765431 11223444555666888
Q ss_pred eCCCCCeEEEeecCCCc---eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeC
Q 011711 166 KGDECRFWHSWFCGEGF---TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~---~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
.|-..|++.-+.+...+ ..++.+..|...|..+-|+.....+++.+.|..+.---.+.+..+..+......
T Consensus 85 vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~------ 158 (404)
T KOG1409|consen 85 VGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA------ 158 (404)
T ss_pred EEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccC------
Confidence 88888999988887543 456677789999999999999999999999987765555665554333211110
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEE
Q 011711 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l 322 (479)
.++.+.-...+.|...|.|.+..+.... ..++..+.+|.++++++
T Consensus 159 --------------------------------t~~~~d~~~~fvGd~~gqvt~lr~~~~~---~~~i~~~~~h~~~~~~l 203 (404)
T KOG1409|consen 159 --------------------------------SALQFDALYAFVGDHSGQITMLKLEQNG---CQLITTFNGHTGEVTCL 203 (404)
T ss_pred --------------------------------CCCceeeEEEEecccccceEEEEEeecC---CceEEEEcCcccceEEE
Confidence 0111111156667777888777766554 35688899999999999
Q ss_pred EEc--CCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEecc---
Q 011711 323 AVG--GKRLYSGSMDNTIRVWDLDTLEA-VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYT--- 394 (479)
Q Consensus 323 ~~~--~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--- 394 (479)
+|+ ...+++|+.|..+.+||+--.+- ...+.+|...|..+..- -..+++++.||.|.+|+.+..........
T Consensus 204 ~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~ 283 (404)
T KOG1409|consen 204 KWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSD 283 (404)
T ss_pred EEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccc
Confidence 998 77899999999999999976543 46778899988887766 57899999999999999875421100000
Q ss_pred --------------------------ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC-------Cceeeeeec
Q 011711 395 --------------------------HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS-------FMERGRIFS 441 (479)
Q Consensus 395 --------------------------~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~ 441 (479)
|.-..-.-+++...+.+.. ....-+..-.+++-|.-. ...+. +.|
T Consensus 284 ~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~-~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA-~ph 361 (404)
T KOG1409|consen 284 SCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRS-SYPTMGFEFSVRVCDSCYPTIKDEERTPLA-IPH 361 (404)
T ss_pred hhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcc-ccccccceeEEEEecccchhhhcCCCCccc-ccc
Confidence 0000000011111111111 122222333444444211 11122 222
Q ss_pred --cCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 442 --RREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 442 --~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
+..|+.|.+..+- +|+|+|.|..|+|||+..
T Consensus 362 ei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 362 EIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred ccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 6679999998876 999999999999999875
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=7.4e-14 Score=130.01 Aligned_cols=202 Identities=15% Similarity=0.132 Sum_probs=148.1
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 241 (479)
+.++..+.||.+.+-+-. + +..+...+|.++|.+-.|+|||.-|+|++.||.|++|.- +|-...+
T Consensus 76 d~~~i~s~DGkf~il~k~-~-rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRSt------------ 140 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-A-RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRST------------ 140 (737)
T ss_pred ceEEEEcCCceEEEeccc-c-hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHH------------
Confidence 356667788888887643 2 456678899999999999999999999999999999983 3322111
Q ss_pred CCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 242 ~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
+......|+|++|.|+ .+++. .+.+.+=.+..+.. ....++|.+-
T Consensus 141 -------------------------l~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~k-----~i~WkAHDGi 188 (737)
T KOG1524|consen 141 -------------------------VVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANSK-----IIRWRAHDGL 188 (737)
T ss_pred -------------------------HhhcCceeEEEEECCCCCceEEec--CCeEEEeecccccc-----eeEEeccCcE
Confidence 1234567899999988 44443 34566555544432 4557899999
Q ss_pred eEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEecccc
Q 011711 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN 396 (479)
Q Consensus 319 i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 396 (479)
|.|+.|+ .+.+++|++|-..++||-. |+.+.+-..|.-+|++++|..+.++..+.-+++++=
T Consensus 189 iL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~--------------- 252 (737)
T KOG1524|consen 189 VLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFS--------------- 252 (737)
T ss_pred EEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccceeeeeeeeeeec---------------
Confidence 9999998 8899999999999999954 677888888999999999995544443334455521
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCCCeEEE
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCNDDSVHL 427 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~i 427 (479)
.+.....+.+.|++||. .+++|+..|.+.+
T Consensus 253 ~p~~GSifnlsWS~DGT-Q~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 253 SPRVGSIFNLSWSADGT-QATCGTSTGQLIV 282 (737)
T ss_pred CCCccceEEEEEcCCCc-eeeccccCceEEE
Confidence 12223356677889998 7888888887654
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.57 E-value=6.4e-13 Score=134.99 Aligned_cols=223 Identities=16% Similarity=0.197 Sum_probs=152.8
Q ss_pred cCCeeEeCCCCCeEEEeecCCC------ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-------e
Q 011711 160 LSGNCVKGDECRFWHSWFCGEG------FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-------S 226 (479)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~------~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~-------~ 226 (479)
..+.+++|+.||+|++|+...- .+...++.--.+.+.++.+.+.++.+|.++.||.|++.+++..+ +
T Consensus 1060 ~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~ 1139 (1431)
T KOG1240|consen 1060 HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQ 1139 (1431)
T ss_pred CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeee
Confidence 3467888999999999988532 12233343346789999999999999999999999999987632 1
Q ss_pred EEEEec--CCceeEEEe----CCC-E-EEEEcCCeEEEEEcCCCceE---EecCCCccEEEEEEcCC--EEEEEeCCCcE
Q 011711 227 ASVINL--GAEVGSLIC----EGP-W-VFVGMPNVVKAWHIESSAEF---SLDGPVGEVYSMVVANE--MLFAGAQDGNI 293 (479)
Q Consensus 227 ~~~~~~--~~~~~~~~~----~~~-~-l~~~~~~~i~v~~~~~~~~~---~~~~~~~~v~~~~~~~~--~l~~g~~dg~i 293 (479)
....+. ...+..+.. .+. . +++...+.|..||+...... ......+.|++++.++. .++.|+..|.+
T Consensus 1140 ~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l 1219 (1431)
T KOG1240|consen 1140 VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQL 1219 (1431)
T ss_pred eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceE
Confidence 111111 122333321 222 3 34456788999999887643 34456788999999987 99999999999
Q ss_pred EEEEccCCCCCcccceeeecCCCCCeEEEEEc---C--CEEEEEe--CCCeEEEEECCCCcEEEEEeCCC----------
Q 011711 294 LVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---G--KRLYSGS--MDNTIRVWDLDTLEAVMTLNGHT---------- 356 (479)
Q Consensus 294 ~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~--~~l~sgs--~dg~I~iwd~~~~~~~~~~~~h~---------- 356 (479)
.+||++-+.. .......+..+|..+..+ + ...++++ ..+.|.+|++.++.+...+....
T Consensus 1220 ~lWDLRF~~~----i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~P 1295 (1431)
T KOG1240|consen 1220 VLWDLRFRVP----ILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALP 1295 (1431)
T ss_pred EEEEeecCce----eecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcc
Confidence 9999987642 233334556778777765 3 4444444 57899999999988777664331
Q ss_pred -------C---CcEEEEEc-CCEEEEEeCCCeEEEEEcCCC
Q 011711 357 -------D---APMSLLCW-DQYLLSCSLDNTIKVWIMTEE 386 (479)
Q Consensus 357 -------~---~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~ 386 (479)
. .+.+.... +.++++|+.|+.|+.||....
T Consensus 1296 s~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1296 SNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 0 11222222 578999999999999998654
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=2.5e-11 Score=106.65 Aligned_cols=219 Identities=14% Similarity=0.240 Sum_probs=159.3
Q ss_pred eeEeCCCCCeEEEeecCCCceeeEEEeccccc--EEEEEeCCCCCEEEE-EeCC------CcEEEEECCCCceEEEEecC
Q 011711 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKA--VSGIALPLRSDKLYS-GSRD------GTVQLWDCHTGQSASVINLG 233 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~--V~~l~~s~~~~~l~s-~s~D------g~v~vwd~~~~~~~~~~~~~ 233 (479)
.|.+...|.-.+||+++.- +....-+-+.+. +..+-| ..++|+- |+.+ ..|.|||-...+++.++...
T Consensus 18 ScFava~~~Gfriyn~~P~-ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~ 94 (346)
T KOG2111|consen 18 SCFAVATDTGFRIYNCDPF-KESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFN 94 (346)
T ss_pred ceEEEEecCceEEEecCch-hhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecccCcEEEEEEec
Confidence 4555566677899999652 222222222222 222223 2344443 3332 47999998889999999999
Q ss_pred CceeEEEeCCCEEEEEcCCeEEEEEcCCCce-E---EecCCCccEEEEEEcCC--EEEE-EeCCCcEEEEEccCCCCCcc
Q 011711 234 AEVGSLICEGPWVFVGMPNVVKAWHIESSAE-F---SLDGPVGEVYSMVVANE--MLFA-GAQDGNILVWKGIPNTQNPF 306 (479)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~-~---~~~~~~~~v~~~~~~~~--~l~~-g~~dg~i~iwd~~~~~~~~~ 306 (479)
.++.++......+++..++.|.+|....+.. + ..........+++...+ .|+. |-.-|.|++-|+......
T Consensus 95 ~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-- 172 (346)
T KOG2111|consen 95 SEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-- 172 (346)
T ss_pred cceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC--
Confidence 9999999999999999999999999985432 2 22222233555554444 3333 667799999999876531
Q ss_pred cceeeecCCCCCeEEEEEc--CCEEEEEeCCCe-EEEEECCCCcEEEEEeCC--CCCcEEEEEc--CCEEEEEeCCCeEE
Q 011711 307 QLAALLKGHTRPVTCLAVG--GKRLYSGSMDNT-IRVWDLDTLEAVMTLNGH--TDAPMSLLCW--DQYLLSCSLDNTIK 379 (479)
Q Consensus 307 ~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~h--~~~v~~~~~~--~~~l~s~s~dg~i~ 379 (479)
....+.+|...|.|++.+ |..+||+|..|+ |||||..+++.++++.-. ...+.+++++ ..+|+++|..|++.
T Consensus 173 -~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlH 251 (346)
T KOG2111|consen 173 -APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLH 251 (346)
T ss_pred -CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEE
Confidence 346688999999999997 999999999998 789999999999999643 3458899988 67999999999999
Q ss_pred EEEcCCCc
Q 011711 380 VWIMTEEG 387 (479)
Q Consensus 380 iwd~~~~~ 387 (479)
|+.++...
T Consensus 252 iF~l~~~~ 259 (346)
T KOG2111|consen 252 IFSLRDTE 259 (346)
T ss_pred EEEeecCC
Confidence 99987643
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.52 E-value=4.6e-12 Score=111.17 Aligned_cols=202 Identities=16% Similarity=0.106 Sum_probs=155.3
Q ss_pred cCCCeEEEeccCC--eeEeCCCCCeEEEeecCCC--ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEEC-CCC
Q 011711 150 TTPKNVCYHWLSG--NCVKGDECRFWHSWFCGEG--FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC-HTG 224 (479)
Q Consensus 150 ~~~~~~c~~~~~~--~~~~g~~d~~i~vw~~~~~--~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~-~~~ 224 (479)
....+.|..|..+ .++.+-....++||..... .+..++++.|...|+.|+|+|..+.|++|+.|..-.||.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 3445677777655 6777888889999998644 5789999999999999999999999999999999999998 444
Q ss_pred ceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCC
Q 011711 225 QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNT 302 (479)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~ 302 (479)
+-..+ +.+..+....+++.|+|. .|++|+....|.+|-++...
T Consensus 89 ~Wkpt-----------------------------------lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN 133 (361)
T KOG1523|consen 89 TWKPT-----------------------------------LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN 133 (361)
T ss_pred eeccc-----------------------------------eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc
Confidence 32222 223456778899999987 99999999999999887654
Q ss_pred CCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECC-----C-------------CcEEEEEeCCCCCcEEE
Q 011711 303 QNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD-----T-------------LEAVMTLNGHTDAPMSL 362 (479)
Q Consensus 303 ~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~-----~-------------~~~~~~~~~h~~~v~~~ 362 (479)
.- +-....-+.+.+.|++++|+ +-++++|+.|+..++|..- . |+++.++....+.+..+
T Consensus 134 dW-WVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v 212 (361)
T KOG1523|consen 134 DW-WVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGV 212 (361)
T ss_pred ce-ehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeee
Confidence 31 11222345677889999997 5578889999999999642 1 23344444455678888
Q ss_pred EEc--CCEEEEEeCCCeEEEEEcCCCc
Q 011711 363 LCW--DQYLLSCSLDNTIKVWIMTEEG 387 (479)
Q Consensus 363 ~~~--~~~l~s~s~dg~i~iwd~~~~~ 387 (479)
.|. |..|+-.+.|..+.+-|.....
T Consensus 213 ~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 213 LFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred EeCCCCCEeeEecCCCceEEeecCCCc
Confidence 887 8999999999999999987664
No 213
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.8e-11 Score=110.20 Aligned_cols=187 Identities=20% Similarity=0.177 Sum_probs=136.6
Q ss_pred EEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEE
Q 011711 275 YSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVM 350 (479)
Q Consensus 275 ~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~ 350 (479)
..++++.+ .+++|+.||++++|+..... .+.....|...|.+|.|+ ++.|++-+.| ..+||+.+++..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-----t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-----TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-----hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence 55667665 99999999999999976643 356677899999999997 8899999999 99999999997776
Q ss_pred EEeCCCC--CcEEEEEc--C---C-EEEE-EeCCCeEEEEEcCCCcc-----eEEeccccCccceEEEeeeeCCCCCcEE
Q 011711 351 TLNGHTD--APMSLLCW--D---Q-YLLS-CSLDNTIKVWIMTEEGN-----LEVAYTHNEDHGVLALGGLNDPDGNPVL 416 (479)
Q Consensus 351 ~~~~h~~--~v~~~~~~--~---~-~l~s-~s~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l 416 (479)
....... ....+.|. + . ++++ ...-+.|+.||+..... ..........+.++.+ +++|+ ++
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V----S~dGk-f~ 296 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV----SDDGK-FL 296 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE----cCCCc-EE
Confidence 6653221 12333333 2 2 2222 22345566666543321 1122222334555555 58998 99
Q ss_pred EEEeCCCeEEEeecCCCceeeeee--ccCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 417 ICSCNDDSVHLYELPSFMERGRIF--SRREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 417 ~s~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
+.|+.||.|-|++..+.+...... |...|+.+.|+||. .+++.+.|....|..+.-
T Consensus 297 AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999988887776 47789999999999 999999999999998876
No 214
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.47 E-value=1.2e-10 Score=113.37 Aligned_cols=250 Identities=13% Similarity=0.074 Sum_probs=165.1
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEE-EEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCcee--
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSG-IALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG-- 237 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~-l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~-- 237 (479)
.+.+..++.++.+..+|..++ +.+...... +.+.+ ... .+..++.++.++.|..||.++|+.+..+....+..
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG-~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDG-KELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCC-cEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 567778888999999999888 555554432 22221 111 35567778889999999999999888776654321
Q ss_pred -----EEEeCCCEEEEEcCCeEEEEEcCCCceEEecC---CCc---------cEEEEEEcCCEEEEEeCCCcEEEEEccC
Q 011711 238 -----SLICEGPWVFVGMPNVVKAWHIESSAEFSLDG---PVG---------EVYSMVVANEMLFAGAQDGNILVWKGIP 300 (479)
Q Consensus 238 -----~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~---~~~---------~v~~~~~~~~~l~~g~~dg~i~iwd~~~ 300 (479)
....++.+++...++.+..+|.++++..-... ..+ ...+..+.++.+++++.+|.++.+|..+
T Consensus 181 ~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t 260 (377)
T TIGR03300 181 RGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS 260 (377)
T ss_pred cCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC
Confidence 12234444444567899999998887642111 000 0112234466888899999999999987
Q ss_pred CCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC-CCcEEEEEcCCEEEEEeCCCeEE
Q 011711 301 NTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT-DAPMSLLCWDQYLLSCSLDNTIK 379 (479)
Q Consensus 301 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~l~s~s~dg~i~ 379 (479)
++. ..... ..........++.+++++.||.|..+|..+++.+....... ....+....+..+++++.+|.|+
T Consensus 261 G~~-----~W~~~--~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~ 333 (377)
T TIGR03300 261 GRV-----LWKRD--ASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLH 333 (377)
T ss_pred CcE-----EEeec--cCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEE
Confidence 643 22222 11223344568889999999999999999999887663222 22333344688999999999999
Q ss_pred EEEcCCCcceEEeccccCccc-eEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 011711 380 VWIMTEEGNLEVAYTHNEDHG-VLALGGLNDPDGNPVLICSCNDDSVHLY 428 (479)
Q Consensus 380 iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~dg~v~iw 428 (479)
++|..+++.+.....+..... ...+ .+++ |+.++.||.|+.|
T Consensus 334 ~~d~~tG~~~~~~~~~~~~~~~sp~~-----~~~~--l~v~~~dG~l~~~ 376 (377)
T TIGR03300 334 WLSREDGSFVARLKTDGSGIASPPVV-----VGDG--LLVQTRDGDLYAF 376 (377)
T ss_pred EEECCCCCEEEEEEcCCCccccCCEE-----ECCE--EEEEeCCceEEEe
Confidence 999999887776665443221 1122 3443 5567789988765
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.9e-11 Score=120.57 Aligned_cols=221 Identities=13% Similarity=0.041 Sum_probs=147.1
Q ss_pred CCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCC---CcEEEEECCCCceEEEEec--CCceeEEEeCC
Q 011711 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GTVQLWDCHTGQSASVINL--GAEVGSLICEG 243 (479)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D---g~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~ 243 (479)
.+..|.+||.+.. . .+.+..|...|.+.+|+|||+.|+.++.+ ..|.+||+.+++....... ......+.++|
T Consensus 182 ~~~~i~i~d~dg~-~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG 259 (429)
T PRK01742 182 QPYEVRVADYDGF-N-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDG 259 (429)
T ss_pred ceEEEEEECCCCC-C-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCC
Confidence 3579999998654 2 45677888899999999999999988754 3699999998865433322 22334566788
Q ss_pred CEEEEE--cCCe--EEEEEcCCCceEEecCCCccEEEEEEcCC--EEE-EEeCCCcEEEEEccCCCCCcccceeeecCCC
Q 011711 244 PWVFVG--MPNV--VKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF-AGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (479)
Q Consensus 244 ~~l~~~--~~~~--i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~ 316 (479)
+.++.+ .++. |.+||+.++....+..+...+....|+++ .|+ ++..+|...+|++...... ...+ .+.
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~----~~~l-~~~ 334 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG----ASLV-GGR 334 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEe-cCC
Confidence 877654 4565 44557777777767677777888999988 444 4556788899987654321 1112 233
Q ss_pred CCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcC--CCcceEEe
Q 011711 317 RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMT--EEGNLEVA 392 (479)
Q Consensus 317 ~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~ 392 (479)
. .+..|+ ++.++..+.++ +.+||+.+++.......+...-.+++.++++|+.++.++.+.+|++. ++.....+
T Consensus 335 ~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 335 G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 2 334554 88888877765 55699998876533333322223444458899999999988888753 45555555
Q ss_pred ccccCcc
Q 011711 393 YTHNEDH 399 (479)
Q Consensus 393 ~~~~~~~ 399 (479)
..+...+
T Consensus 412 ~~~~g~~ 418 (429)
T PRK01742 412 PGSDGQV 418 (429)
T ss_pred cCCCCCC
Confidence 5554433
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=1.4e-11 Score=110.96 Aligned_cols=208 Identities=14% Similarity=0.192 Sum_probs=151.8
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecCCCc---eeeEEEecccccEEEEEeCCCCC-EEEEEeCC--CcEEEEECCCCceE
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGF---TMLAKLEGHKKAVSGIALPLRSD-KLYSGSRD--GTVQLWDCHTGQSA 227 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~~~~---~~~~~~~~H~~~V~~l~~s~~~~-~l~s~s~D--g~v~vwd~~~~~~~ 227 (479)
..-.....+.++++-.+|.+.+|..+.+. ..+..+.-| ..+..+.-++... .+++|+.. ..++|||++..+.+
T Consensus 108 I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi 186 (412)
T KOG3881|consen 108 IKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI 186 (412)
T ss_pred ccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee
Confidence 44455567788899999999999998441 334444444 4566666655544 45568888 88999999887554
Q ss_pred EEEecC-CceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC----EEEEEeCCCcEEEEEccCCC
Q 011711 228 SVINLG-AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNT 302 (479)
Q Consensus 228 ~~~~~~-~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~ 302 (479)
..-..- .... +=.+-+| ++++.|.+. .|++++.-+.+++||.+.+.
T Consensus 187 w~aKNvpnD~L-------------~LrVPvW----------------~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR 237 (412)
T KOG3881|consen 187 WSAKNVPNDRL-------------GLRVPVW----------------ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR 237 (412)
T ss_pred eeccCCCCccc-------------cceeeee----------------eccceecCCCCCceEEEEecceeEEEecCcccC
Confidence 332210 0000 0112223 334455433 89999999999999998664
Q ss_pred CCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEE-EeCCCCCcEEEEEcC--CEEEEEeCCCe
Q 011711 303 QNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT-LNGHTDAPMSLLCWD--QYLLSCSLDNT 377 (479)
Q Consensus 303 ~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~v~~~~~~~--~~l~s~s~dg~ 377 (479)
.++..+.-...+|+++... ++++++|..-|.+..||+++++.... +.+-.+.+.++..++ +++++++.|..
T Consensus 238 ----RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy 313 (412)
T KOG3881|consen 238 ----RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY 313 (412)
T ss_pred ----cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee
Confidence 3566677778888888774 99999999999999999999998877 889999999999995 59999999999
Q ss_pred EEEEEcCCCcceEEeccc
Q 011711 378 IKVWIMTEEGNLEVAYTH 395 (479)
Q Consensus 378 i~iwd~~~~~~~~~~~~~ 395 (479)
+||+|+.+.+.+...+..
T Consensus 314 vRIhD~ktrkll~kvYvK 331 (412)
T KOG3881|consen 314 VRIHDIKTRKLLHKVYVK 331 (412)
T ss_pred EEEeecccchhhhhhhhh
Confidence 999999987666555543
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.45 E-value=5.9e-12 Score=110.53 Aligned_cols=201 Identities=12% Similarity=0.070 Sum_probs=164.3
Q ss_pred CCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCC
Q 011711 270 PVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT 345 (479)
Q Consensus 270 ~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~ 345 (479)
-..+|+|.+|+++ .++++..+..|.||.....+. ++...++..|...|++++|+ .+.|++++.|..-++|....
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC--ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 4568999999988 899999999999999887664 67889999999999999997 78999999999999999843
Q ss_pred -C--cEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe
Q 011711 346 -L--EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (479)
Q Consensus 346 -~--~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 420 (479)
+ ++...+..+.....++.|. ++.+++|+.-..|.||-++....-........++.....++.|.|++- ++++|+
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs 165 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGS 165 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccc
Confidence 3 4455566788889999998 689999999999999988776655555555666777778888889887 899999
Q ss_pred CCCeEEEeecC-----C-------------Cceeeee-eccCceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 421 NDDSVHLYELP-----S-------------FMERGRI-FSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 421 ~dg~v~iwd~~-----~-------------~~~~~~~-~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
.|+..++|..- . ++.+.+. ...+.+..+.|+|+| .|+-.+.|+.|.+=|-..+
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 99999999642 1 1222222 236779999999999 9999999999999887654
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=2.3e-11 Score=109.67 Aligned_cols=244 Identities=11% Similarity=0.123 Sum_probs=171.4
Q ss_pred ccccEEEEEeCCCC--CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEec
Q 011711 191 HKKAVSGIALPLRS--DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLD 268 (479)
Q Consensus 191 H~~~V~~l~~s~~~--~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~ 268 (479)
-...|+.++|..++ +.|...+.|..+....+......... |++. ...
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~--------------------------~~~~-----~~~ 102 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL--------------------------DDAK-----TVS 102 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccc--------------------------cccc-----ccc
Confidence 44677788885443 34555656767777776655544332 1111 223
Q ss_pred CCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCC--CeEEEEEC
Q 011711 269 GPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMD--NTIRVWDL 343 (479)
Q Consensus 269 ~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~d--g~I~iwd~ 343 (479)
.....|..+...+..|+++..+|.+.+|....+..... ....+..+ .++..+.-+ ...+++|+.. ..+.+||+
T Consensus 103 l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss-~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 103 LGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSS-KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred cccccccchhhcCCEEEEEecCCcEEEEeccCCccccc-cceeeecC-CceeeeccCCCCCceEecCchhcccceeeeec
Confidence 45667788888888999999999999999876542111 12222222 334444433 6678889999 89999999
Q ss_pred CCCcEEEEEeCCCC---------CcEEEEEc----CCEEEEEeCCCeEEEEEcCCCcce-EEeccccCccceEEEeeeeC
Q 011711 344 DTLEAVMTLNGHTD---------APMSLLCW----DQYLLSCSLDNTIKVWIMTEEGNL-EVAYTHNEDHGVLALGGLND 409 (479)
Q Consensus 344 ~~~~~~~~~~~h~~---------~v~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 409 (479)
.+.+.+.+-+.-.. .++++.|. ...|++++.-+++++||.+.+... ..+......+..+.. .
T Consensus 181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l----~ 256 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL----T 256 (412)
T ss_pred ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee----c
Confidence 98866655442221 23555554 358999999999999999876543 334444445555555 3
Q ss_pred CCCCcEEEEEeCCCeEEEeecCCCceeeeee-c-cCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 410 PDGNPVLICSCNDDSVHLYELPSFMERGRIF-S-RREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 410 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~-~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
|.++ ++++|..-+.+..||++.++...... . .+.|+++..+|.+ +++++|-|..|+|+|+++
T Consensus 257 p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 257 PSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 8888 78889999999999999999988844 3 8899999999999 999999999999999987
No 219
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.40 E-value=1.1e-09 Score=107.00 Aligned_cols=296 Identities=12% Similarity=0.040 Sum_probs=189.1
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEeccc--c--------cE-EEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHK--K--------AV-SGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~--~--------~V-~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~ 229 (479)
.+.+..++.++.+..+|.+++ +.+...+-.. . .+ ..+.. ++..++.++.+|.+.-+|.++|+.+..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTG-KEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCC-cEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 456667777888899998888 5555543221 0 00 01111 356788888999999999999999988
Q ss_pred EecCCceeE--EEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCcc------EEEEEEcCCEEEEEeCCCcEEEEEccCC
Q 011711 230 INLGAEVGS--LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGE------VYSMVVANEMLFAGAQDGNILVWKGIPN 301 (479)
Q Consensus 230 ~~~~~~~~~--~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~------v~~~~~~~~~l~~g~~dg~i~iwd~~~~ 301 (479)
.+......+ +..++.+++...++.+..+|.++++..-....... ..+-....+.++.++.+|.+..+|..++
T Consensus 146 ~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G 225 (394)
T PRK11138 146 TKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQG 225 (394)
T ss_pred ccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCC
Confidence 877655432 33456666666788999999999987532211111 0112233457888889999999998877
Q ss_pred CCCcccc-eeeecC-CC----CC-eEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeC
Q 011711 302 TQNPFQL-AALLKG-HT----RP-VTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSL 374 (479)
Q Consensus 302 ~~~~~~~-~~~~~~-h~----~~-i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~ 374 (479)
+.. ++. .....+ +. .. ..+-...++.++.++.+|.+..+|+.+++.+.+.... ....+...+..++.++.
T Consensus 226 ~~~-W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~~~~vy~~~~ 302 (394)
T PRK11138 226 QLI-WQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAVDGGRIYLVDQ 302 (394)
T ss_pred hhh-heeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEEECCEEEEEcC
Confidence 532 110 000000 00 00 0112234677888889999999999999988766422 22234556888899999
Q ss_pred CCeEEEEEcCCCcceEEeccccCc-cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEE-EEEC
Q 011711 375 DNTIKVWIMTEEGNLEVAYTHNED-HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRV-IETG 451 (479)
Q Consensus 375 dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~-l~~s 451 (479)
+|.+..+|..+++.+......... .....+ .++ .++.++.||.++..|..+++.+.+... ...+.+ ..+
T Consensus 303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-----~~g--~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~- 374 (394)
T PRK11138 303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVL-----YNG--YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV- 374 (394)
T ss_pred CCeEEEEECCCCcEEEcccccCCCcccCCEE-----ECC--EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-
Confidence 999999999888654433221111 111111 233 567788999999999999998887754 222332 222
Q ss_pred CCceEEEEcCCCcEEEEEe
Q 011711 452 PDGLFFTGDGTGMLSVWKI 470 (479)
Q Consensus 452 ~~g~l~sg~~dg~v~vw~~ 470 (479)
.++.|+.++.||.|..++.
T Consensus 375 ~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 375 ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ECCEEEEEeCCceEEEEeC
Confidence 2558888999999988764
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.38 E-value=9.9e-13 Score=120.67 Aligned_cols=216 Identities=16% Similarity=0.189 Sum_probs=174.4
Q ss_pred eCCCEEEE-EcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 241 CEGPWVFV-GMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 241 ~~~~~l~~-~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
-+|+.++. |..|.+..+|..+.....-..-...|.++.|-.+ .+++......+++||-..-. +..++.| ..
T Consensus 139 rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE------lHClk~~-~~ 211 (545)
T KOG1272|consen 139 RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE------LHCLKRH-IR 211 (545)
T ss_pred CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE------Eeehhhc-Cc
Confidence 36665554 5789999999999988766666777888888766 66666778899999954321 3334433 45
Q ss_pred eEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEecc
Q 011711 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (479)
Q Consensus 319 i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (479)
|..+.|- .-+|++++..|.++.-|+.+|+.+..+..-.+.+..+..+ +..+-+|...|+|.+|.....+++..+..
T Consensus 212 v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc 291 (545)
T KOG1272|consen 212 VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC 291 (545)
T ss_pred hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh
Confidence 7777775 5568889999999999999999999888776666555554 67888999999999999999999999999
Q ss_pred ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCceEEEEcCCCcEEEEE
Q 011711 395 HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDGLFFTGDGTGMLSVWK 469 (479)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g~l~sg~~dg~v~vw~ 469 (479)
|..++..+++ +++|. ++++++.|..++|||++....+..+....+...+++|..|+|+.+-.| .|.||.
T Consensus 292 H~g~V~siAv----~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~-~v~iw~ 360 (545)
T KOG1272|consen 292 HRGPVSSIAV----DRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGD-HVQIWK 360 (545)
T ss_pred cCCCcceEEE----CCCCc-EEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCC-eeeeeh
Confidence 9999999998 48888 889999999999999999998888877788999999999877766544 689996
No 221
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.36 E-value=1.2e-08 Score=95.47 Aligned_cols=260 Identities=13% Similarity=0.090 Sum_probs=166.7
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeC----------CCcEEEEECCCCceEEEEecCCc-----
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR----------DGTVQLWDCHTGQSASVINLGAE----- 235 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~----------Dg~v~vwd~~~~~~~~~~~~~~~----- 235 (479)
+.|.+.|..+. +.+..+..-..+-- + ++||++.|+.+.. +..|.+||..+++.+..+..+..
T Consensus 27 ~~v~ViD~~~~-~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAG-RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCC-EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 89999999887 77777775444433 4 8999999888766 78999999999999999987654
Q ss_pred -----eeEEEeCCCEEEEEc---CCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCccc
Q 011711 236 -----VGSLICEGPWVFVGM---PNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307 (479)
Q Consensus 236 -----~~~~~~~~~~l~~~~---~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 307 (479)
...+.++|+++++.. ++.+.+.|+.+++.+....-.+...-+...++...+-+.||......+.........
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 556778999999764 789999999999887533333333333344444445556666665544433221111
Q ss_pred ceeeecCC-----CCCeEEEEE-cCCEEEEEeCCCeEEEEECCCC-----cEEEEEeC-------CCCCcEEEEEc--CC
Q 011711 308 LAALLKGH-----TRPVTCLAV-GGKRLYSGSMDNTIRVWDLDTL-----EAVMTLNG-------HTDAPMSLLCW--DQ 367 (479)
Q Consensus 308 ~~~~~~~h-----~~~i~~l~~-~~~~l~sgs~dg~I~iwd~~~~-----~~~~~~~~-------h~~~v~~~~~~--~~ 367 (479)
....+..- ..+ .... ++.++++..+ |+|.+.|+... +....+.. ..+...-++++ ++
T Consensus 184 ~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 184 PTEVFHPEDEYLINHP--AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred eeeeecCCccccccCC--ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11111110 112 1122 4777777666 99999996443 33333221 11222224444 67
Q ss_pred EEEEEe----------CCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEE-EEeCCCeEEEeecCCCcee
Q 011711 368 YLLSCS----------LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLI-CSCNDDSVHLYELPSFMER 436 (479)
Q Consensus 368 ~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~ 436 (479)
.++... ..+.|.++|..+.+.+..+.... ....+.+ +||+++.|+ +...++.|.++|..+++.+
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~-~~~~iav----S~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH-EIDSINV----SQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC-ceeeEEE----CCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 666642 12579999999888777665433 2233344 699994444 4447889999999999999
Q ss_pred eeeec
Q 011711 437 GRIFS 441 (479)
Q Consensus 437 ~~~~~ 441 (479)
..+..
T Consensus 336 ~~i~~ 340 (352)
T TIGR02658 336 SSVNQ 340 (352)
T ss_pred eeecc
Confidence 88744
No 222
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=5.7e-12 Score=117.95 Aligned_cols=160 Identities=23% Similarity=0.321 Sum_probs=127.7
Q ss_pred ceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCCCcEEEEEc----CCEEEEEeCCCeEEE
Q 011711 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL-NGHTDAPMSLLCW----DQYLLSCSLDNTIKV 380 (479)
Q Consensus 308 ~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~v~~~~~~----~~~l~s~s~dg~i~i 380 (479)
....+.+|++-|.|+.|+ |.+|++|+.|-.+.|||.-..++++.+ .+|...|.++.|. +..+++|+.|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 356689999999999997 999999999999999999998888887 5899999999886 568999999999999
Q ss_pred EEcCCC----------cceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeee-----------
Q 011711 381 WIMTEE----------GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRI----------- 439 (479)
Q Consensus 381 wd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----------- 439 (479)
+|+... ........|...+..++.+ |++...+.+++.||+|+-+|++.......-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~----p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATA----PNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecC----CCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 999852 2223333455555666664 888779999999999999999763211110
Q ss_pred eccCceEEEEECCCc--eEEEEcCCCcEEEEEec
Q 011711 440 FSRREVRVIETGPDG--LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 440 ~~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~ 471 (479)
..--...++.++|.. +|+.|+.|-..++||..
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 013457899999987 99999999999999953
No 223
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=2e-10 Score=115.66 Aligned_cols=140 Identities=16% Similarity=0.241 Sum_probs=111.4
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEE--EecCCceeE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV--INLGAEVGS 238 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~--~~~~~~~~~ 238 (479)
.-++++|..-+.|.+|+......+. .+.||++.|.++.|+.||.++++.|+|.++|+|++++.+.... +.+...+..
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred EEEEEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 3378899999999999998543333 7899999999999999999999999999999999999987763 333344443
Q ss_pred EE-eCCCEEEEEcCCeEEEEEcCCCceEEecCCC-ccEEEEEEcCC--EEEEEeCCCcEEEEEccCC
Q 011711 239 LI-CEGPWVFVGMPNVVKAWHIESSAEFSLDGPV-GEVYSMVVANE--MLFAGAQDGNILVWKGIPN 301 (479)
Q Consensus 239 ~~-~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~-~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~ 301 (479)
.. .++.++.++.|-+.++|+.+..+.....+|. ..+..++..++ .+++++.||.+++||+...
T Consensus 224 ~~~~~n~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 224 CCFLPNRIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEeccceeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 33 3556777789999999987776665666665 45788888877 8899999999999997653
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=7.7e-11 Score=111.16 Aligned_cols=260 Identities=15% Similarity=0.220 Sum_probs=179.5
Q ss_pred CCCCCCCCceec-cCCCCCCccccccccCCCCCCCCCCccccc-----cCcCCCC------Ceeeee-------------
Q 011711 94 PSYNCPKNNVRV-SSGSEEGTTHVQNRENPDRTVPNKSSLDCS-----TGSDDSG------SKRTLE------------- 148 (479)
Q Consensus 94 ~~~~~s~~g~~l-as~~~dg~i~iw~~~~~~~~~~~~~~~~~~-----~~~~~~~------~~~~~~------------- 148 (479)
+.+.++|||+|+ |+|-.-=.|+++++.....- -..|++.. ..+++-. .-+.++
T Consensus 55 t~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RI 132 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRI 132 (703)
T ss_pred ceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeec
Confidence 899999999985 66777788899987763210 01111100 0000000 001111
Q ss_pred ecCCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEE
Q 011711 149 RTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS 228 (479)
Q Consensus 149 ~~~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~ 228 (479)
...+..+|++...-.+..++....|.-.+++.| ..+..|.-..+.+++|..++-..+|++|+.||.|..||..+...+.
T Consensus 133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred CcCCccccccCCCccEEEeecCcceEEEEcccc-ccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhe
Confidence 123345666666666666666678888899998 7888888888999999999999999999999999999999888877
Q ss_pred EEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcc
Q 011711 229 VINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPF 306 (479)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~ 306 (479)
.+.....+.+. ........|+++.|.++ .+++|+.+|.|.+||+++...
T Consensus 212 ~l~~~~~v~s~--------------------------pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--- 262 (703)
T KOG2321|consen 212 TLDAASSVNSH--------------------------PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--- 262 (703)
T ss_pred eeecccccCCC--------------------------ccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc---
Confidence 77644332211 01123346999999987 899999999999999998754
Q ss_pred cceeeecCCCCCeEEEEEc----CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEE
Q 011711 307 QLAALLKGHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKV 380 (479)
Q Consensus 307 ~~~~~~~~h~~~i~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~i 380 (479)
+...-.+..-+|..+.|. ++.+++ .....++|||-.+|+....+..-.+ +..+++. +.+++++-.++.+..
T Consensus 263 -l~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 263 -LLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTSD-LNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred -eeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccCC-cCceeeecCCceEEEecCCCccee
Confidence 233233445688888884 344544 3557899999999999888875443 5555444 678889988888887
Q ss_pred EEcCCCcc
Q 011711 381 WIMTEEGN 388 (479)
Q Consensus 381 wd~~~~~~ 388 (479)
|=+..-++
T Consensus 340 yyiP~LGP 347 (703)
T KOG2321|consen 340 YYIPSLGP 347 (703)
T ss_pred EEccccCC
Confidence 76665444
No 225
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.3e-10 Score=116.90 Aligned_cols=180 Identities=24% Similarity=0.315 Sum_probs=137.7
Q ss_pred CCCEEEEEcCCeEEEEEcCCCceEEecCCCccEE--EE---EEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecC
Q 011711 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVY--SM---VVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (479)
Q Consensus 242 ~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~--~~---~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 314 (479)
+.+..++..++.+.+||...........+..... ++ ..+++ ++++|+.-+.|.+|+...... ...+.+
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~-----p~~l~G 173 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK-----PIRLKG 173 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-----cceecc
Confidence 3445556789999999998887765444433322 21 12333 899999999999999884322 226899
Q ss_pred CCCCeEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE-EEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEE
Q 011711 315 HTRPVTCLAV--GGKRLYSGSMDNTIRVWDLDTLEAVM-TLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEV 391 (479)
Q Consensus 315 h~~~i~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 391 (479)
|.+.|.++.+ +|.++++.|+|.++++|++++.+... +.-+|+..+..+.+.+..+++++.|-+.++|+.+. ..+..
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~-~~l~~ 252 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG-TQLEV 252 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEeccc-ceehh
Confidence 9999999999 49999999999999999999988876 77789999999999988999999999999997653 33444
Q ss_pred eccccCc-cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 392 AYTHNED-HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 392 ~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
+..|... +..+.. +.+..++++++.|+.+++||+..
T Consensus 253 y~~h~g~~iw~~~~-----~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 253 YDEHSGKGIWKIAV-----PIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhhhhcceeEEEE-----cCCceEEEeeccCcchhhhhhhc
Confidence 4444432 333333 56666999999999999999865
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.31 E-value=2.2e-10 Score=107.39 Aligned_cols=183 Identities=16% Similarity=0.159 Sum_probs=132.8
Q ss_pred EEEEEeCCCcEEEEEccCCCCCcccceee--ecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCC------------
Q 011711 283 MLFAGAQDGNILVWKGIPNTQNPFQLAAL--LKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDT------------ 345 (479)
Q Consensus 283 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~--~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~------------ 345 (479)
-+++|-..|.|++.|...... ..+.. ..-.+..|+|+.|- ...++++-.+|.++++|..-
T Consensus 187 dllIGf~tGqvq~idp~~~~~---sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEV---SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred ceEEeeccCceEEecchhhHH---HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 788899999999998765321 11111 11234789999993 67888888999999997631
Q ss_pred --Cc--------------EEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeee
Q 011711 346 --LE--------------AVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGL 407 (479)
Q Consensus 346 --~~--------------~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (479)
+. ++..+..-.+.|..++++ +++|++.+.||.+||||..+.+.+......-.. .+++.
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG----LLCvc 339 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG----LLCVC 339 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc----eEEEE
Confidence 11 111222223456666665 789999999999999999887655444443333 35566
Q ss_pred eCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECC----------------------------------
Q 011711 408 NDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGP---------------------------------- 452 (479)
Q Consensus 408 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~---------------------------------- 452 (479)
|+|||+ +|++|+.|..|.||.+...+.+..-. |+..|+.++|.|
T Consensus 340 WSPDGK-yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S 418 (636)
T KOG2394|consen 340 WSPDGK-YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGS 418 (636)
T ss_pred EcCCcc-EEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCC
Confidence 789999 99999999999999999888877755 477888888872
Q ss_pred --------------Cc-eEEEEcCCCcEEEEEeccC
Q 011711 453 --------------DG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 453 --------------~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
.. +|.+.+.|-.+.+||+..+
T Consensus 419 ~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 419 AEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred cCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 11 5778899999999999764
No 227
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=4e-10 Score=111.19 Aligned_cols=204 Identities=16% Similarity=0.148 Sum_probs=130.7
Q ss_pred CeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCC---CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-
Q 011711 252 NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD---GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG- 325 (479)
Q Consensus 252 ~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~- 325 (479)
..|.+||........+..+...+.+..|+|+ .|+..+.+ ..|++||+.++.. +.+..+.+|. ..++|+
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~---~~l~~~~g~~---~~~~wSP 257 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR---KVVASFRGHN---GAPAFSP 257 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce---EEEecCCCcc---CceeECC
Confidence 4677777766665556667778999999988 66665543 4699999977642 2233334443 356775
Q ss_pred -CCEEEEE-eCCCeEEE--EECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEe-CCCeEEEEEcCCCcceEEeccccCc
Q 011711 326 -GKRLYSG-SMDNTIRV--WDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS-LDNTIKVWIMTEEGNLEVAYTHNED 398 (479)
Q Consensus 326 -~~~l~sg-s~dg~I~i--wd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~ 398 (479)
++.|+.+ +.+|.+.| ||+.+++. ..+..+...+....|+ ++.|+..+ .+|...||+++..........+..
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~- 335 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG- 335 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-
Confidence 7777765 46786555 46666654 4555566666666666 66666544 578888888754332222222221
Q ss_pred cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 399 HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
....++|+|+ .++..+.++ +.+||+.+++..... .........|+||| .|++++.+|.+.+|.+.
T Consensus 336 -----~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~~~lt-~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 -----YSAQISADGK-TLVMINGDN-VVKQDLTSGSTEVLS-STFLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred -----CCccCCCCCC-EEEEEcCCC-EEEEECCCCCeEEec-CCCCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 1234679999 455555554 666999887654322 22234578899999 88888889999988864
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.9e-09 Score=106.58 Aligned_cols=229 Identities=16% Similarity=0.015 Sum_probs=139.2
Q ss_pred CCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCC---CcEEEEECCCCceEEEEecCCceeEEEeCCCEE
Q 011711 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GTVQLWDCHTGQSASVINLGAEVGSLICEGPWV 246 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (479)
...|.+||.... ..+.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++......
T Consensus 183 ~~~l~i~D~~g~--~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~--------------- 245 (433)
T PRK04922 183 RYALQVADSDGY--NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS--------------- 245 (433)
T ss_pred eEEEEEECCCCC--CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc---------------
Confidence 346889998543 345566778889999999999999988743 368888887776432211
Q ss_pred EEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EE-EEEeCCC--cEEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 247 FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--ML-FAGAQDG--NILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 247 ~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l-~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
..+...+..|+++ .+ ++.+.+| .|++||+.++. ...+..+......
T Consensus 246 -----------------------~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~------~~~lt~~~~~~~~ 296 (433)
T PRK04922 246 -----------------------FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ------LTRLTNHFGIDTE 296 (433)
T ss_pred -----------------------CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC------eEECccCCCCccc
Confidence 1222335677766 34 4445555 58999987764 2334444444556
Q ss_pred EEEc--CCEEEEEeC-CCe--EEEEECCCCcEEEEEeCCCCCcEEEEE--cCCEEEEEeCCC---eEEEEEcCCCcceEE
Q 011711 322 LAVG--GKRLYSGSM-DNT--IRVWDLDTLEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDN---TIKVWIMTEEGNLEV 391 (479)
Q Consensus 322 l~~~--~~~l~sgs~-dg~--I~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~s~dg---~i~iwd~~~~~~~~~ 391 (479)
.+|+ ++.++..+. +|. |+++|+.+++... +..+........+ ++++|+..+.++ .|.+||+.+++.. .
T Consensus 297 ~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~ 374 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-T 374 (433)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-E
Confidence 7775 777776653 444 7777887766432 2222222333444 478887665443 6999999776543 3
Q ss_pred eccccCccceEEEeeeeCCCCCcEEEEEeCC--CeEEEeecCCCceeeeee-ccCceEEEEECC
Q 011711 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCND--DSVHLYELPSFMERGRIF-SRREVRVIETGP 452 (479)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~ 452 (479)
+. +..... ...++|+|+.++++.... +.+.++++... ....+. +.+.+...+|+|
T Consensus 375 Lt-~~~~~~----~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 375 LT-PGSLDE----SPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC-CCCCCC----CceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccCCCCCCCCccCC
Confidence 32 221112 234579999655555433 45777787544 333333 356677778876
No 229
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=7.3e-10 Score=99.11 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=154.7
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCC
Q 011711 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPV 271 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~ 271 (479)
+..+..++|++.-..++++..|-+|++||-.. ++...++ ....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lk------------------------------------s~sQ 140 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK------------------------------------SVSQ 140 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceec------------------------------------chhh
Confidence 34577889988777789999999999999765 3333222 1234
Q ss_pred ccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcc---------cceeeecCCCCCeEEEEEc--CCEEEEEeC-CC
Q 011711 272 GEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPF---------QLAALLKGHTRPVTCLAVG--GKRLYSGSM-DN 336 (479)
Q Consensus 272 ~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~---------~~~~~~~~h~~~i~~l~~~--~~~l~sgs~-dg 336 (479)
..|.+++|-|. .|++|+..| |.+|.......... ..+....+| .+|++|.|+ |..+++++. |.
T Consensus 141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence 56889999876 788887664 88897643221100 011223344 689999996 788888774 67
Q ss_pred eEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCc
Q 011711 337 TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNP 414 (479)
Q Consensus 337 ~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (479)
.|.|||.+++..+.-.....+.+.-+.|+ +++|+++.-|+..++|+....-.........+ ..-...|+|+|..
T Consensus 219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg----rvqtacWspcGsf 294 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG----RVQTACWSPCGSF 294 (445)
T ss_pred eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC----ceeeeeecCCCCE
Confidence 89999999988766554444556666666 78999999999999996544322222222222 2334557899998
Q ss_pred EEEEEeCCCeEEEeecCCCcee-------------eeee----------ccCceEEEEECCCc-eEEEEcCC--------
Q 011711 415 VLICSCNDDSVHLYELPSFMER-------------GRIF----------SRREVRVIETGPDG-LFFTGDGT-------- 462 (479)
Q Consensus 415 ~l~s~~~dg~v~iwd~~~~~~~-------------~~~~----------~~~~v~~l~~s~~g-~l~sg~~d-------- 462 (479)
+|++.+..-.++--........ ..+. ..+++.+++|.|.| +|++.-..
T Consensus 295 LLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k 374 (445)
T KOG2139|consen 295 LLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCK 374 (445)
T ss_pred EEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhh
Confidence 8888776655443333221110 0010 15779999999999 77764432
Q ss_pred CcEEEEEeccC
Q 011711 463 GMLSVWKILAK 473 (479)
Q Consensus 463 g~v~vw~~~~~ 473 (479)
+.|.+||....
T Consensus 375 ~~i~~fdtr~s 385 (445)
T KOG2139|consen 375 LHISRFDTRKS 385 (445)
T ss_pred hhhhhhccccc
Confidence 34666665543
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=3e-09 Score=104.75 Aligned_cols=229 Identities=10% Similarity=-0.021 Sum_probs=137.0
Q ss_pred CCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeC---CCcEEEEECCCCceEEEEecCCceeEEEeCCCEE
Q 011711 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR---DGTVQLWDCHTGQSASVINLGAEVGSLICEGPWV 246 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~---Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (479)
...|.+||.+.. . .+.+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++......
T Consensus 178 ~~~l~~~d~dg~-~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~--------------- 240 (429)
T PRK03629 178 PYELRVSDYDGY-N-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--------------- 240 (429)
T ss_pred ceeEEEEcCCCC-C-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC---------------
Confidence 347888888654 2 3444556788999999999999987653 3468888887765432221
Q ss_pred EEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEE-EeCCC--cEEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 247 FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFA-GAQDG--NILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 247 ~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~-g~~dg--~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
..+.+....|+|+ .|+. ...+| .|++||+.++.. ..+..+...+..
T Consensus 241 -----------------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~------~~lt~~~~~~~~ 291 (429)
T PRK03629 241 -----------------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI------RQVTDGRSNNTE 291 (429)
T ss_pred -----------------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE------EEccCCCCCcCc
Confidence 1122334677777 4443 34455 488899876542 233334455677
Q ss_pred EEEc--CCEEEEEeCC-C--eEEEEECCCCcEEEEEeCCCCCcEEEEE--cCCEEEEEeCC---CeEEEEEcCCCcceEE
Q 011711 322 LAVG--GKRLYSGSMD-N--TIRVWDLDTLEAVMTLNGHTDAPMSLLC--WDQYLLSCSLD---NTIKVWIMTEEGNLEV 391 (479)
Q Consensus 322 l~~~--~~~l~sgs~d-g--~I~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~s~d---g~i~iwd~~~~~~~~~ 391 (479)
..|+ ++.|+..+.+ + .|.++|+.+++. ..+..+........+ ++++|+..+.+ ..|.+||+.++... .
T Consensus 292 ~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~ 369 (429)
T PRK03629 292 PTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-V 369 (429)
T ss_pred eEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-E
Confidence 7886 7777666654 4 455557777654 333333333333444 47788766543 35888998776533 3
Q ss_pred eccccCccceEEEeeeeCCCCCcEEEEEeCCCe---EEEeecCCCceeeeee-ccCceEEEEECCC
Q 011711 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS---VHLYELPSFMERGRIF-SRREVRVIETGPD 453 (479)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~---v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~ 453 (479)
+... ... ....++|||+ .|+.++.++. +.+++++... ...+. +.+.+...+|+|-
T Consensus 370 Lt~~-~~~----~~p~~SpDG~-~i~~~s~~~~~~~l~~~~~~G~~-~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 370 LTDT-FLD----ETPSIAPNGT-MVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eCCC-CCC----CCceECCCCC-EEEEEEcCCCceEEEEEECCCCC-eEECccCCCCcCCcccCCC
Confidence 3221 111 2344579999 4555555543 6777775443 33343 4677888888873
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.30 E-value=8.4e-10 Score=97.49 Aligned_cols=329 Identities=12% Similarity=0.069 Sum_probs=186.9
Q ss_pred CCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCC---eeEeCCCCC
Q 011711 95 SYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG---NCVKGDECR 171 (479)
Q Consensus 95 ~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~---~~~~g~~d~ 171 (479)
-..|||+|+|+|+.+ +..+-|.|..+-.. . ++.. - ...+.-..|..+ .+-....++
T Consensus 13 ~c~fSp~g~yiAs~~-~yrlviRd~~tlq~----~-qlf~--c-------------ldki~yieW~ads~~ilC~~yk~~ 71 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-RYRLVIRDSETLQL----H-QLFL--C-------------LDKIVYIEWKADSCHILCVAYKDP 71 (447)
T ss_pred ceeECCCCCeeeeee-eeEEEEeccchhhH----H-HHHH--H-------------HHHhhheeeeccceeeeeeeeccc
Confidence 456899999999998 55666665443221 0 0000 0 001222223222 223456789
Q ss_pred eEEEeecCCCceeeEEEecccccEEEEEeCCCCCE-EEEEeCCCcEEEEECCCCceEEEEe--cCCceeEEEeCCCEEEE
Q 011711 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDK-LYSGSRDGTVQLWDCHTGQSASVIN--LGAEVGSLICEGPWVFV 248 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~-l~s~s~Dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 248 (479)
.|.+|++... +-...+..-..++.+++|||||+. |.+..-|-.|.||.+.+.+....-. ......++..+|++.+.
T Consensus 72 ~vqvwsl~Qp-ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 72 KVQVWSLVQP-EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAI 150 (447)
T ss_pred eEEEEEeecc-eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeee
Confidence 9999999877 677778888899999999999965 5566678899999998876554332 22333344446665543
Q ss_pred Ec-------------------------------------CCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeC
Q 011711 249 GM-------------------------------------PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ 289 (479)
Q Consensus 249 ~~-------------------------------------~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~ 289 (479)
.. ++.+.+||---...+-.-...-.+..++|+|. .|++|+.
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeecc
Confidence 21 23444555332222212222345778888884 9999999
Q ss_pred CCcEEEEEccCCCCCcccceeeecCCCC--------------------CeEEEEEcCCEEEEEeCCCeEEEEECC-----
Q 011711 290 DGNILVWKGIPNTQNPFQLAALLKGHTR--------------------PVTCLAVGGKRLYSGSMDNTIRVWDLD----- 344 (479)
Q Consensus 290 dg~i~iwd~~~~~~~~~~~~~~~~~h~~--------------------~i~~l~~~~~~l~sgs~dg~I~iwd~~----- 344 (479)
|+++++.+--+=+ +... ..|-. ...|+.|-. .|-...+|...
T Consensus 231 D~~lrvlnh~tWk-----~f~e-flhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p-------~~~~a~~~~~se~~YE 297 (447)
T KOG4497|consen 231 DQMLRVLNHFTWK-----PFGE-FLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP-------TDLEAHIWEESETIYE 297 (447)
T ss_pred chhhhhhceeeee-----ehhh-hccchhccCchhhhhhhhhcchhhhcccccccCC-------CccccCccccchhhhh
Confidence 9999986533211 1100 01111 112333321 11112222211
Q ss_pred ---CCcEEEEEe------CCCCCcEEEEEc--CCEEEEEeC--CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCC
Q 011711 345 ---TLEAVMTLN------GHTDAPMSLLCW--DQYLLSCSL--DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPD 411 (479)
Q Consensus 345 ---~~~~~~~~~------~h~~~v~~~~~~--~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (479)
+...++.++ .....+--++|+ ..++++-.. -+.+-+||++..+....+. ..+++ ..+.|+|.
T Consensus 298 ~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~pi----raf~WdP~ 372 (447)
T KOG4497|consen 298 QQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPI----RAFEWDPG 372 (447)
T ss_pred hhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccce----eEEEeCCC
Confidence 122223333 222335556666 344544333 2468899998755433332 22332 33445777
Q ss_pred CCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCc
Q 011711 412 GNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGM 464 (479)
Q Consensus 412 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~ 464 (479)
...++++. ....+++|.......+......-.|..+.|..+| .++-.+.|-.
T Consensus 373 ~prL~vct-g~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 373 RPRLVVCT-GKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CceEEEEc-CCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 66555544 4567999998776666655556789999999999 7777777753
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.29 E-value=3.5e-09 Score=101.33 Aligned_cols=275 Identities=15% Similarity=0.108 Sum_probs=170.4
Q ss_pred EEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEe-CCCcEEEEECCCCceEEEEecC
Q 011711 155 VCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS-RDGTVQLWDCHTGQSASVINLG 233 (479)
Q Consensus 155 ~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s-~Dg~v~vwd~~~~~~~~~~~~~ 233 (479)
.++.+.+..+...+.|+.|.++|+.+. +.+.+++.... -.++++++||++++++. .++.+.++|.++.+.++.++..
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~-~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATG-KVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSS-SEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcc-cEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 455666666666678999999999999 78888876544 57799999999998775 6899999999999999988754
Q ss_pred C--------ceeEEE--eCCC-EEEEEc-CCeEEEEEcCCCceE--EecCCCccEEEEEEcCC--E-EEEEeCCCcEEEE
Q 011711 234 A--------EVGSLI--CEGP-WVFVGM-PNVVKAWHIESSAEF--SLDGPVGEVYSMVVANE--M-LFAGAQDGNILVW 296 (479)
Q Consensus 234 ~--------~~~~~~--~~~~-~l~~~~-~~~i~v~~~~~~~~~--~~~~~~~~v~~~~~~~~--~-l~~g~~dg~i~iw 296 (479)
. .+..+. +.++ ++++-. .+.|.+.|....... .............++++ + +++...++.|.++
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi 199 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI 199 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEE
Confidence 2 233443 3445 555554 478888887765433 23334456677888887 4 4445667789999
Q ss_pred EccCCCCCcccceeee----cCCCCCeEEEE-------E----cCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEE
Q 011711 297 KGIPNTQNPFQLAALL----KGHTRPVTCLA-------V----GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMS 361 (479)
Q Consensus 297 d~~~~~~~~~~~~~~~----~~h~~~i~~l~-------~----~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~ 361 (479)
|..++.. ...+ ..|..++..+- | .+...++.-....+.+||..+.+.++++...... .-
T Consensus 200 D~~~~k~-----v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lF 273 (369)
T PF02239_consen 200 DTKTGKL-----VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LF 273 (369)
T ss_dssp ETTTTEE-----EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---
T ss_pred eeccceE-----EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ce
Confidence 9877542 1111 22333333322 2 1333333333446678999999999999976666 44
Q ss_pred EEEc--CCEEEEE----eCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCC-eEEEeecCCCc
Q 011711 362 LLCW--DQYLLSC----SLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD-SVHLYELPSFM 434 (479)
Q Consensus 362 ~~~~--~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~ 434 (479)
+..+ +++++.. ...++|.++|.++.+....+..... .......++++|+.+.++.-.++ .|.+||..+.+
T Consensus 274 i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~---~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 274 IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG---KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC---CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 4444 6788887 4468999999988755444432222 11344456799997777776655 89999999999
Q ss_pred eeeeee
Q 011711 435 ERGRIF 440 (479)
Q Consensus 435 ~~~~~~ 440 (479)
+..++.
T Consensus 351 ~~~~i~ 356 (369)
T PF02239_consen 351 EKKRIP 356 (369)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998877
No 233
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=7.2e-10 Score=105.36 Aligned_cols=215 Identities=16% Similarity=0.134 Sum_probs=155.9
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEc
Q 011711 201 PLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVA 280 (479)
Q Consensus 201 s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~ 280 (479)
+|...++|....||.+++||..+++....+..... .+..++-..|.+.-.................-.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~------------~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS------------LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchh------------ccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 45678999999999999999999988877753222 112233334442111100000000011111112
Q ss_pred CCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCC
Q 011711 281 NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA 358 (479)
Q Consensus 281 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 358 (479)
...++-|...|.|.+|++..+.. .-...-..|.+.|.++.++ -..|.+++.|+.+..|+....+.+..++.....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~i---t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEI---TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeE---EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 22889999999999999988753 2223335799999999986 567999999999999999999999999988888
Q ss_pred cEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCC-CCcEEEEEeCCCeEEEeecCC
Q 011711 359 PMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPD-GNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 359 v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~ 432 (479)
+.++.+. +..+++++ ++|++||+++.+.+..+.+|..++..+.+....+.. |.++|.+...+..+.+|-...
T Consensus 147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 8888877 45888776 589999999999999999999999999887654433 777787777778888887655
No 234
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.4e-08 Score=96.20 Aligned_cols=305 Identities=12% Similarity=0.127 Sum_probs=194.3
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEE-----eCC-----CcEEEEECCC
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSG-----SRD-----GTVQLWDCHT 223 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~-----s~D-----g~v~vwd~~~ 223 (479)
.++.+...+.+.+-+.+..++|++..... .+..... ..+.++.|+|-+.+|.|- ..| -.+++|++++
T Consensus 38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~-~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet 114 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQVVKVFEIATLK-VVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET 114 (566)
T ss_pred eeEEEcCCCcEEEEEcCCeEEEEEccCCc-EEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence 45556666777777788999999998874 3333322 289999999999998863 122 3577999999
Q ss_pred CceEEEEecCCce---eEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC----EEEE-----EeCCC
Q 011711 224 GQSASVINLGAEV---GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFA-----GAQDG 291 (479)
Q Consensus 224 ~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~-----g~~dg 291 (479)
+.....+...... ..+..+..+.+--..+.+.+|++.........-|...|..+.+++. .+++ ++.-+
T Consensus 115 ~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa 194 (566)
T KOG2315|consen 115 GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPA 194 (566)
T ss_pred ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCc
Confidence 6655555433222 2233344444445788999999998776666667788888888866 4444 34556
Q ss_pred cEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CC-EEEEEe--C---------CCeEEEEECCCCcEEEEEeCCCC
Q 011711 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GK-RLYSGS--M---------DNTIRVWDLDTLEAVMTLNGHTD 357 (479)
Q Consensus 292 ~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~-~l~sgs--~---------dg~I~iwd~~~~~~~~~~~~h~~ 357 (479)
.|++|........ +.+..-.-....=..+.|+ +. +|+.++ - +.++++.+++...+.-.+. ..+
T Consensus 195 ~vri~~~~~~~~~--~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~G 271 (566)
T KOG2315|consen 195 SVRIYKYPEEGQH--QPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEG 271 (566)
T ss_pred EEEEecccccccc--chhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCC
Confidence 7999987633221 1111111112222345565 22 232222 2 3468888887444443333 478
Q ss_pred CcEEEEEc--CCE--EEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeC--CCeEEEeecC
Q 011711 358 APMSLLCW--DQY--LLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN--DDSVHLYELP 431 (479)
Q Consensus 358 ~v~~~~~~--~~~--l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--dg~v~iwd~~ 431 (479)
+|.++.|+ +.- ++-|-.=-.+.|||++-. .......++...+.+ +|.|+.++++|-. .|.|.|||+.
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v~df~egpRN~~~f----np~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---PVFDFPEGPRNTAFF----NPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEEcCCCC---EeEeCCCCCccceEE----CCCCCEEEEeecCCCCCceEEEecc
Confidence 89999998 433 334445678999998643 222233334344444 6999966666533 4889999999
Q ss_pred CCceeeeeeccCceEEEEECCCc-eEEEEcC------CCcEEEEEecc
Q 011711 432 SFMERGRIFSRREVRVIETGPDG-LFFTGDG------TGMLSVWKILA 472 (479)
Q Consensus 432 ~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~------dg~v~vw~~~~ 472 (479)
+.+++..+... .-+-..|+||| +|+|+.. |..++||++.-
T Consensus 345 n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 345 NRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred chhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 98888777653 35678999999 7777654 78899999864
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=7.7e-09 Score=102.43 Aligned_cols=229 Identities=14% Similarity=0.036 Sum_probs=141.7
Q ss_pred CCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeC---CCcEEEEECCCCceEEEEecCCceeEEEeCCCEE
Q 011711 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR---DGTVQLWDCHTGQSASVINLGAEVGSLICEGPWV 246 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~---Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (479)
...|.++|.+.. ..+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.....
T Consensus 181 ~~~l~~~d~dg~--~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~---------------- 242 (435)
T PRK05137 181 IKRLAIMDQDGA--NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG---------------- 242 (435)
T ss_pred ceEEEEECCCCC--CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee----------------
Confidence 357888887543 45667788899999999999999988764 457888988877643221
Q ss_pred EEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EE-EEEeCCCc--EEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 247 FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--ML-FAGAQDGN--ILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 247 ~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l-~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
...+.+....|+|+ .| ++.+.++. |++||+.++. ...+..+......
T Consensus 243 ----------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~------~~~Lt~~~~~~~~ 294 (435)
T PRK05137 243 ----------------------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT------TTRLTDSPAIDTS 294 (435)
T ss_pred ----------------------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc------eEEccCCCCccCc
Confidence 22334556677776 44 45555555 7777877654 2334445555566
Q ss_pred EEEc--CCEEEEEeC-CC--eEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCC---CeEEEEEcCCCcceEE
Q 011711 322 LAVG--GKRLYSGSM-DN--TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD---NTIKVWIMTEEGNLEV 391 (479)
Q Consensus 322 l~~~--~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d---g~i~iwd~~~~~~~~~ 391 (479)
..|+ ++.++..+. +| .|+++|+.+++.. .+..+...+....++ ++.|+..+.+ ..|.+||+..... ..
T Consensus 295 ~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~ 372 (435)
T PRK05137 295 PSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RI 372 (435)
T ss_pred eeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Ee
Confidence 7775 777776653 33 6888898776543 343333334444444 7888776543 3688888755432 22
Q ss_pred eccccCccceEEEeeeeCCCCCcEEEEEeCC-----CeEEEeecCCCceeeeeeccCceEEEEECC
Q 011711 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCND-----DSVHLYELPSFMERGRIFSRREVRVIETGP 452 (479)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~v~~l~~s~ 452 (479)
+. ...... ...|+|||+.++++.... ..+.++|+..+.. ..+.....+...+|+|
T Consensus 373 lt-~~~~~~----~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp 432 (435)
T PRK05137 373 LT-SGFLVE----GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSP 432 (435)
T ss_pred cc-CCCCCC----CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCC
Confidence 22 222222 334579999655555433 3578888876554 3444445567777776
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=6.1e-09 Score=102.71 Aligned_cols=233 Identities=15% Similarity=0.033 Sum_probs=136.6
Q ss_pred CCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCC---CcEEEEECCCCceEEEEecCCceeEEEeCCCEE
Q 011711 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GTVQLWDCHTGQSASVINLGAEVGSLICEGPWV 246 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (479)
...|.++|.+ + ...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.....
T Consensus 175 ~~~L~~~D~d-G-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---------------- 236 (427)
T PRK02889 175 RYQLQISDAD-G-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---------------- 236 (427)
T ss_pred ccEEEEECCC-C-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee----------------
Confidence 3467777763 3 3345566788899999999999999887743 35888898877654321
Q ss_pred EEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEE-EEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEE
Q 011711 247 FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF-AGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLA 323 (479)
Q Consensus 247 ~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~ 323 (479)
...+.+....|+|+ .|+ +.+.+|...+|.++.... ....+..+........
T Consensus 237 ----------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~ 290 (427)
T PRK02889 237 ----------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS----GLRRLTQSSGIDTEPF 290 (427)
T ss_pred ----------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC----CcEECCCCCCCCcCeE
Confidence 12233456778877 444 567788766666543221 1233444444555667
Q ss_pred Ec--CCEEEEEeC-CCeEEEE--ECCCCcEEE-EEeCCCCCcEEEEEcCCEEEEEeCCC---eEEEEEcCCCcceEEecc
Q 011711 324 VG--GKRLYSGSM-DNTIRVW--DLDTLEAVM-TLNGHTDAPMSLLCWDQYLLSCSLDN---TIKVWIMTEEGNLEVAYT 394 (479)
Q Consensus 324 ~~--~~~l~sgs~-dg~I~iw--d~~~~~~~~-~~~~h~~~v~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~ 394 (479)
|+ |+.++..+. +|...+| ++.+++... ++.+....-..++.+|++|+..+.++ .|.+||+.+++... +..
T Consensus 291 wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~ 369 (427)
T PRK02889 291 FSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD 369 (427)
T ss_pred EcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC
Confidence 75 777765553 4555565 445544322 22222111223344488888776654 69999998765432 222
Q ss_pred ccCccceEEEeeeeCCCCCcEEEEEeCCCe--EEEeecCCCceeeeee-ccCceEEEEECCC
Q 011711 395 HNEDHGVLALGGLNDPDGNPVLICSCNDDS--VHLYELPSFMERGRIF-SRREVRVIETGPD 453 (479)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~--v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~ 453 (479)
. ... -...|+|+|+.++++....|. +.+.++. +.....+. +.+.+...+|+|-
T Consensus 370 ~-~~~----~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 370 T-TRD----ESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred C-CCc----cCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCCC
Confidence 1 111 234557999966666654544 5555563 44444443 3566777888873
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=9.3e-09 Score=101.71 Aligned_cols=208 Identities=13% Similarity=0.081 Sum_probs=129.2
Q ss_pred eEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeC---CCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--
Q 011711 253 VVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ---DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-- 325 (479)
Q Consensus 253 ~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-- 325 (479)
.|.+||........+..+...+.+..|+|+ .|+..+. +..|++||+.++.. ..+........+..|+
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~------~~l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR------ELVASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE------EEeccCCCCccCceECCC
Confidence 688999887776666667778899999988 6666553 34699999977642 2222333344466775
Q ss_pred CCEEE-EEeCCC--eEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeC-CCe--EEEEEcCCCcceEEeccccC
Q 011711 326 GKRLY-SGSMDN--TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL-DNT--IKVWIMTEEGNLEVAYTHNE 397 (479)
Q Consensus 326 ~~~l~-sgs~dg--~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~ 397 (479)
++.++ +.+.+| .|++||+.+++. ..+..+........|+ ++.|+..+. +|. |.++|+.+++.. .+.....
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~ 336 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGN 336 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCC
Confidence 66654 556655 599999998875 3455454444455555 677776664 444 666677655432 2222222
Q ss_pred ccceEEEeeeeCCCCCcEEEEEeCCC--eEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcC-C--CcEEEEEec
Q 011711 398 DHGVLALGGLNDPDGNPVLICSCNDD--SVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDG-T--GMLSVWKIL 471 (479)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~-d--g~v~vw~~~ 471 (479)
... ...++|+|+.++++...++ .|.+||+.+++.. .+.+........|+||| .|+..+. . +.|.++++.
T Consensus 337 ~~~----~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 337 YNA----RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred Ccc----CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 222 2345799995555443333 6999999887655 33333345677999999 5554443 2 356666664
Q ss_pred cC
Q 011711 472 AK 473 (479)
Q Consensus 472 ~~ 473 (479)
..
T Consensus 412 g~ 413 (433)
T PRK04922 412 GR 413 (433)
T ss_pred CC
Confidence 43
No 238
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.22 E-value=4.8e-10 Score=105.11 Aligned_cols=155 Identities=20% Similarity=0.271 Sum_probs=113.0
Q ss_pred cccEEEEEeCCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEE------cCCeEEEEEcCCCce
Q 011711 192 KKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVG------MPNVVKAWHIESSAE 264 (479)
Q Consensus 192 ~~~V~~l~~s~~~-~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~i~v~~~~~~~~ 264 (479)
+..|+++.|-|.+ ..++.+-.+|.+.++|.+-. .....+......++..+... .++-+.-|.+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~----- 288 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----CGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHI----- 288 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeecccc-----ccCCCCcccccCCCCeeEEeeeeccccCCccceeEe-----
Confidence 4789999997654 45666678899999987211 11111111122233322221 1122222322
Q ss_pred EEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEE
Q 011711 265 FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRV 340 (479)
Q Consensus 265 ~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~i 340 (479)
..+.|+.++|++| +||+.+.||.++|||..+. ++...++..-+...|++|+ |+++++|++|.-|.|
T Consensus 289 -----~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-----eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 289 -----GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-----ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTV 358 (636)
T ss_pred -----ccccccceeEcCCCceEEEEecCceEEEeeccHH-----HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEE
Confidence 3447888999988 9999999999999998874 4566667777899999997 999999999999999
Q ss_pred EECCCCcEEEEEeCCCCCcEEEEEcC
Q 011711 341 WDLDTLEAVMTLNGHTDAPMSLLCWD 366 (479)
Q Consensus 341 wd~~~~~~~~~~~~h~~~v~~~~~~~ 366 (479)
|.+...+.+..=++|.+.|..++|+.
T Consensus 359 wSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 359 WSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEeccceEEEeccccccceeeEeecc
Confidence 99999999999999999999999985
No 239
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.22 E-value=5.3e-09 Score=91.21 Aligned_cols=193 Identities=15% Similarity=0.176 Sum_probs=123.8
Q ss_pred EEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECC-CCcE
Q 011711 275 YSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLD-TLEA 348 (479)
Q Consensus 275 ~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~-~~~~ 348 (479)
.++.|+.. .++++..+|.+.+-+..... .+..+..+.|.-++....|+ .+.+++|+.|+.+..||++ .++.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~---le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMV---LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceee---eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 34555443 89999999999955543332 44566789999999999996 7889999999999999999 4455
Q ss_pred EEE-EeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCe
Q 011711 349 VMT-LNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS 424 (479)
Q Consensus 349 ~~~-~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 424 (479)
+.. .+.|...|.++..+ +.+|++|+.|-.|++||.++...........+.+ +.+.++|.-...+..++.-+-
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGV----WRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGV----WRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccce----EEEEecchhhhHHHHHHHhcC
Confidence 554 56788999999888 4599999999999999998654332222222322 222233443323344445555
Q ss_pred EEEeecCCCceeeee--eccCceEEEEECCC-----ceEEEEc-CCCcEE-EEEeccCC
Q 011711 425 VHLYELPSFMERGRI--FSRREVRVIETGPD-----GLFFTGD-GTGMLS-VWKILAKP 474 (479)
Q Consensus 425 v~iwd~~~~~~~~~~--~~~~~v~~l~~s~~-----g~l~sg~-~dg~v~-vw~~~~~~ 474 (479)
.+|-+.+.......+ .....-.++++..| +.|+|++ .|..++ +|-.-++.
T Consensus 278 ~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 278 AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 677666554333222 11223334444332 2678765 466644 88655443
No 240
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=3.2e-08 Score=97.55 Aligned_cols=207 Identities=12% Similarity=0.076 Sum_probs=127.8
Q ss_pred eEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEe---CCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--
Q 011711 253 VVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA---QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-- 325 (479)
Q Consensus 253 ~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-- 325 (479)
.|.++|........+..+...+.+..|+|+ .|+..+ .+..|++|++.++.. +.+..+.++ +....|+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~---~~l~~~~~~---~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---RQVASFPRH---NGAPAFSPD 253 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe---EEccCCCCC---cCCeEECCC
Confidence 799999988776666666778999999998 555433 345799999877642 122223333 3456775
Q ss_pred CCEEEEE-eCCC--eEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCC-Ce--EEEEEcCCCcceEEeccccC
Q 011711 326 GKRLYSG-SMDN--TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD-NT--IKVWIMTEEGNLEVAYTHNE 397 (479)
Q Consensus 326 ~~~l~sg-s~dg--~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d-g~--i~iwd~~~~~~~~~~~~~~~ 397 (479)
|+.|+.. +.+| .|++||+++++... +..+...+....|+ ++.|+..+.+ +. |.++|+.++.. ..+.....
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~ 331 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGS 331 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCC
Confidence 7776654 4455 59999999887644 33344445566665 6777766654 44 44456655433 33322222
Q ss_pred ccceEEEeeeeCCCCCcEEEEEeCC--CeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCc---EEEEEec
Q 011711 398 DHGVLALGGLNDPDGNPVLICSCND--DSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGM---LSVWKIL 471 (479)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~---v~vw~~~ 471 (479)
... ...++|+|+.+++++..+ ..|.+||+.+++.. .+..........|+||| .|+..+.++. +.++++.
T Consensus 332 ~~~----~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 332 QNQ----DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred Ccc----CEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 222 234579999655555444 35888999887643 23222234567899999 7777776664 5666664
Q ss_pred c
Q 011711 472 A 472 (479)
Q Consensus 472 ~ 472 (479)
.
T Consensus 407 G 407 (429)
T PRK03629 407 G 407 (429)
T ss_pred C
Confidence 3
No 241
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=2.4e-09 Score=95.28 Aligned_cols=235 Identities=14% Similarity=0.219 Sum_probs=156.0
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCce----eeEEEeccc------------ccEEEEEeCCCCC--EEEEEeCCC
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFT----MLAKLEGHK------------KAVSGIALPLRSD--KLYSGSRDG 214 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~----~~~~~~~H~------------~~V~~l~~s~~~~--~l~s~s~Dg 214 (479)
..+-+...+..+++|+.+|.+-++.-+...+ ....++.|+ ..|..|.|.++++ .++..+.|+
T Consensus 29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdk 108 (433)
T KOG1354|consen 29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDK 108 (433)
T ss_pred eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCc
Confidence 4556777888999999999999998765433 555666665 5788999977654 577888999
Q ss_pred cEEEEECCCCceEE--------------------EEecC-----------------CceeEEE--eCCCEEEEEcCCeEE
Q 011711 215 TVQLWDCHTGQSAS--------------------VINLG-----------------AEVGSLI--CEGPWVFVGMPNVVK 255 (479)
Q Consensus 215 ~v~vwd~~~~~~~~--------------------~~~~~-----------------~~~~~~~--~~~~~l~~~~~~~i~ 255 (479)
+|++|.+....... .+... -.+.+++ .+...+.++.|-.|.
T Consensus 109 tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRIN 188 (433)
T KOG1354|consen 109 TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRIN 188 (433)
T ss_pred ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeee
Confidence 99999875432111 00000 0122222 366677788888999
Q ss_pred EEEcCCCce-E---EecC-----CCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCc-----ccce------eee
Q 011711 256 AWHIESSAE-F---SLDG-----PVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNP-----FQLA------ALL 312 (479)
Q Consensus 256 v~~~~~~~~-~---~~~~-----~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~-----~~~~------~~~ 312 (479)
+|+++-... + -.+. -..-|++..|+|. .++-.+..|+|++-|++...... ++.. .-+
T Consensus 189 LWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsff 268 (433)
T KOG1354|consen 189 LWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFF 268 (433)
T ss_pred eccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhH
Confidence 999875432 2 1222 2235777888877 78888999999999998543210 0000 001
Q ss_pred cCCCCCeEEEEEc--CCEEEEEeCCCeEEEEEC-CCCcEEEEEeCCCC------------Cc---EEEEEcC--CEEEEE
Q 011711 313 KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDL-DTLEAVMTLNGHTD------------AP---MSLLCWD--QYLLSC 372 (479)
Q Consensus 313 ~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~-~~~~~~~~~~~h~~------------~v---~~~~~~~--~~l~s~ 372 (479)
..--..|..+.|+ |+++++-.. -+|++||+ ...+++.+++.|.. .| ..+.++| .++++|
T Consensus 269 seiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TG 347 (433)
T KOG1354|consen 269 SEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTG 347 (433)
T ss_pred HHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecc
Confidence 1122456778886 788877543 68999999 45677888876642 22 3455665 499999
Q ss_pred eCCCeEEEEEcCCCcc
Q 011711 373 SLDNTIKVWIMTEEGN 388 (479)
Q Consensus 373 s~dg~i~iwd~~~~~~ 388 (479)
+..+..+++++..+..
T Consensus 348 sy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 348 SYNNVFRVFNLARGSK 363 (433)
T ss_pred cccceEEEecCCCCcc
Confidence 9999999999765543
No 242
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.20 E-value=2.2e-08 Score=97.89 Aligned_cols=254 Identities=15% Similarity=0.112 Sum_probs=164.6
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCce----
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV---- 236 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~---- 236 (479)
.+.+..++.++.+..+|.+++ +.+.+.+.......+... .+..++.++.++.|.-+|.++|+.+.......+.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG-~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDG-EVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCC-CCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 456777788899999999998 666655543221111111 2456777888999999999999999888754321
Q ss_pred ---eEEEeCCCEEEEEcCCeEEEEEcCCCceEEec---CCCc--c-------EEEEEEcCCEEEEEeCCCcEEEEEccCC
Q 011711 237 ---GSLICEGPWVFVGMPNVVKAWHIESSAEFSLD---GPVG--E-------VYSMVVANEMLFAGAQDGNILVWKGIPN 301 (479)
Q Consensus 237 ---~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~---~~~~--~-------v~~~~~~~~~l~~g~~dg~i~iwd~~~~ 301 (479)
.....++..++...++.+..+|.++++..-.. ...+ . ..+-...++.+++++.+|.+..+|..++
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 12233555666678889999999888754211 1100 0 1122234567888889999999999887
Q ss_pred CCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC-CCcEEEEEcCCEEEEEeCCCeEEE
Q 011711 302 TQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT-DAPMSLLCWDQYLLSCSLDNTIKV 380 (479)
Q Consensus 302 ~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~l~s~s~dg~i~i 380 (479)
+. ..... ......+...++.++.++.+|.+..+|..+++.+.+...-. ....+....+..|+.++.||.+.+
T Consensus 277 ~~-----~W~~~--~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 277 QI-----VWKRE--YGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHW 349 (394)
T ss_pred CE-----EEeec--CCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEE
Confidence 53 11111 11122345568888899999999999999998876554221 122333445788999999999999
Q ss_pred EEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeec
Q 011711 381 WIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 381 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 430 (479)
.|..+++.+..............+ . .++ .|+.++.||.|+.++.
T Consensus 350 ld~~tG~~~~~~~~~~~~~~s~P~---~-~~~--~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 350 INREDGRFVAQQKVDSSGFLSEPV---V-ADD--KLLIQARDGTVYAITR 393 (394)
T ss_pred EECCCCCEEEEEEcCCCcceeCCE---E-ECC--EEEEEeCCceEEEEeC
Confidence 999998766655443222111111 1 233 4666788999888765
No 243
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=2.4e-08 Score=98.93 Aligned_cols=209 Identities=11% Similarity=-0.002 Sum_probs=132.5
Q ss_pred CeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeC---CCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-
Q 011711 252 NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ---DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG- 325 (479)
Q Consensus 252 ~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~- 325 (479)
..|.++|..+.....+..+...+.+..|+|+ .|+..+. +..|++||+.++.. ..+..+...+....|+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~------~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR------ELVGNFPGMTFAPRFSP 255 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE------EEeecCCCcccCcEECC
Confidence 3788999988877777778889999999988 5655542 46899999987642 2334455566677786
Q ss_pred -CCEE-EEEeCCCe--EEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeC-CC--eEEEEEcCCCcceEEecccc
Q 011711 326 -GKRL-YSGSMDNT--IRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL-DN--TIKVWIMTEEGNLEVAYTHN 396 (479)
Q Consensus 326 -~~~l-~sgs~dg~--I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~ 396 (479)
|+.| ++.+.++. |.+||+.+++. ..+..+........++ ++.|+..+. +| .|+++|+..+.. ..+....
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~ 333 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGG 333 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCC
Confidence 7665 45566655 77889988765 4455555444445555 777776664 33 688888765543 3333222
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCC--CeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEE-EcCC-----CcEEE
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCND--DSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFT-GDGT-----GMLSV 467 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~s-g~~d-----g~v~v 467 (479)
.... ...|+|+|+.++++.... ..|.+||+.++.. ..+.....+....|+||| .|+. .... ..+.+
T Consensus 334 ~~~~----~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 334 GRYS----TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred Cccc----CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 2222 234579999555554333 3688888865543 333334457789999999 5444 3333 24666
Q ss_pred EEeccC
Q 011711 468 WKILAK 473 (479)
Q Consensus 468 w~~~~~ 473 (479)
.++..+
T Consensus 409 ~dl~g~ 414 (435)
T PRK05137 409 VDLTGR 414 (435)
T ss_pred EECCCC
Confidence 676544
No 244
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.2e-10 Score=109.47 Aligned_cols=310 Identities=15% Similarity=0.206 Sum_probs=191.7
Q ss_pred eeeec----CccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccC
Q 011711 62 VYFLE----GRCNRNPCRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTG 137 (479)
Q Consensus 62 ~~~~~----~~~~~~p~~~l~~~~p~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 137 (479)
.||++ ..|..--..|-|.. -..|.||+..|..++--.+..-..|+|.|.|+++|.+....- . .
T Consensus 705 A~W~~ets~~e~dt~~ln~~~ir--L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD---~-------~- 771 (1034)
T KOG4190|consen 705 AVWCAETSAAECDTDNLNFDHIR--LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD---E-------I- 771 (1034)
T ss_pred HHHHhhhhHhhcCCcccccceee--eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC---c-------c-
Confidence 35654 23333334444432 335678888888877755556667777788888885443221 0 0
Q ss_pred cCCCCCeeeeeecCCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEE
Q 011711 138 SDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQ 217 (479)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~ 217 (479)
.+. .+..+++.|+.+|.++.|-.+-++++++ ||-|.
T Consensus 772 -----------------------------------------~ts-aCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH 807 (1034)
T KOG4190|consen 772 -----------------------------------------GTS-ACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH 807 (1034)
T ss_pred -----------------------------------------ccc-eeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence 011 4567789999999999999888888765 78999
Q ss_pred EEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EE-EEEeCCCcEEE
Q 011711 218 LWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-ML-FAGAQDGNILV 295 (479)
Q Consensus 218 vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l-~~g~~dg~i~i 295 (479)
+||.--+..+.... |+. ..+..+.|.++.--.. .+ +.++...+|++
T Consensus 808 lWDPFigr~Laq~~-------------------------dap-------k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl 855 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQME-------------------------DAP-------KEGAGGNIKCLENVDRHILIAGCSAESTVKL 855 (1034)
T ss_pred eecccccchhHhhh-------------------------cCc-------ccCCCceeEecccCcchheeeeccchhhhee
Confidence 99987776654332 111 1122333444433222 34 44478889999
Q ss_pred EEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEE-cCCEEEEE
Q 011711 296 WKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC-WDQYLLSC 372 (479)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~s~ 372 (479)
+|.+...-...-.+....+...-+.+++.- |+.++.+-.+|.|.+.|.++|+.+..+....-....++. +++.++..
T Consensus 856 ~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~s 935 (1034)
T KOG4190|consen 856 FDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQS 935 (1034)
T ss_pred eecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhh
Confidence 998876421111111123445667888874 999999999999999999999998887765544444443 36778888
Q ss_pred eCCCeEEE-EEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC----Cceeeeee---ccCc
Q 011711 373 SLDNTIKV-WIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS----FMERGRIF---SRRE 444 (479)
Q Consensus 373 s~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~----~~~~~~~~---~~~~ 444 (479)
..|.++.+ |-...+..........++.. +. ..-|. -+++....+.+.+|.-.. ...+.++. -.+.
T Consensus 936 aldHslaVnWhaldgimh~q~kpppepah---fl---qsvgp-SLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~ 1008 (1034)
T KOG4190|consen 936 ALDHSLAVNWHALDGIMHLQDKPPPEPAH---FL---QSVGP-SLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGT 1008 (1034)
T ss_pred cccceeEeeehhcCCeeeeccCCCCcchh---hh---hccCc-eeEEeccCcEEEEEecchhhhhhhhhccccccccCCc
Confidence 88888888 86554432222222222111 11 02233 466666677778874321 11111221 2577
Q ss_pred eEEEEECCCc-eEEEEcCCCcEEE
Q 011711 445 VRVIETGPDG-LFFTGDGTGMLSV 467 (479)
Q Consensus 445 v~~l~~s~~g-~l~sg~~dg~v~v 467 (479)
.++++.-|-+ -+++|.+.|.|.+
T Consensus 1009 lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1009 LTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cceeeeccccchhhccCCCCceee
Confidence 8899999977 8889999998875
No 245
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.17 E-value=8.9e-08 Score=89.76 Aligned_cols=268 Identities=12% Similarity=0.111 Sum_probs=166.9
Q ss_pred ccEEEEEeCCCCCEEEEEeCCC---------------cEEEEECCCCceEEEEecCCc------eeEEEeCCCEEEEEcC
Q 011711 193 KAVSGIALPLRSDKLYSGSRDG---------------TVQLWDCHTGQSASVINLGAE------VGSLICEGPWVFVGMP 251 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg---------------~v~vwd~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~ 251 (479)
..|..+.|+|.+++|.|-+... .+.+||+.+|..+..+..... +.....+..+++--..
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 4577788888888888865443 499999999999988874332 4455567777776677
Q ss_pred CeEEEEEcCCCceEEecCC---CccEEEEEEcCC----EEEE-----EeCCCcEEEEEccCCCCCcccceeeecCCCCCe
Q 011711 252 NVVKAWHIESSAEFSLDGP---VGEVYSMVVANE----MLFA-----GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (479)
Q Consensus 252 ~~i~v~~~~~~~~~~~~~~---~~~v~~~~~~~~----~l~~-----g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i 319 (479)
..+.++++ +........+ ...|....++|. .|+. ....+++++|.+..+... ....+. ...=
T Consensus 152 ~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l---~tk~lf--k~~~ 225 (561)
T COG5354 152 SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL---VTKNLF--KVSG 225 (561)
T ss_pred CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee---eeeeeE--eecc
Confidence 88999997 4333222111 244666667665 3333 456788899988754321 111111 1112
Q ss_pred EEEEEc--CCEEEEEe-----------CCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCE--EEEEeCCCeEEEEE
Q 011711 320 TCLAVG--GKRLYSGS-----------MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQY--LLSCSLDNTIKVWI 382 (479)
Q Consensus 320 ~~l~~~--~~~l~sgs-----------~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~--l~s~s~dg~i~iwd 382 (479)
..+.|+ |++++.-- ....++++++....+ .....-.++|..+.|. ++. +++|-.+..+.++|
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeecc
Confidence 335554 55543321 235678888874333 2222557889999995 443 34456788999999
Q ss_pred cCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe--CCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEE
Q 011711 383 MTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC--NDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTG 459 (479)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg 459 (479)
++.. ...+........+.+ +|.++++|+.|- ..|.|.+||.........-......+-+.|+||+ .+.+.
T Consensus 305 lr~N---l~~~~Pe~~rNT~~f----sp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 305 LRGN---LRFYFPEQKRNTIFF----SPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTD 377 (561)
T ss_pred cccc---eEEecCCcccccccc----cCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEec
Confidence 9866 233334444444555 588885555442 3477999998876665544445566778999999 44443
Q ss_pred c------CCCcEEEEEeccCC
Q 011711 460 D------GTGMLSVWKILAKP 474 (479)
Q Consensus 460 ~------~dg~v~vw~~~~~~ 474 (479)
. .|..|.||++...+
T Consensus 378 ~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 378 TTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CCCcccccCcceEEEEecCch
Confidence 2 27899999987543
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.17 E-value=4.8e-09 Score=99.84 Aligned_cols=198 Identities=17% Similarity=0.214 Sum_probs=131.1
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecc---cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCcee
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGH---KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG 237 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H---~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~ 237 (479)
...++....||.+++|+...+ ++...|..- ++.-++..| .+.-+.............
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~-~~~~e~~p~~~~s~t~~~~~w-------------------~L~~~~s~~k~~~~~~~~ 64 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKN-QLQQEFAPIASLSGTCTYTKW-------------------GLSADYSPMKWLSLEKAK 64 (541)
T ss_pred hheEeecCCCCeEEEEEccCc-eeeeeeccchhccCcceeEEE-------------------EEEeccchHHHHhHHHHh
Confidence 346777888999999999887 555555321 222333333 311110000000000000
Q ss_pred EEEeCCCEEEEE-cCCeEEEEEcCCCceE---EecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceee
Q 011711 238 SLICEGPWVFVG-MPNVVKAWHIESSAEF---SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAAL 311 (479)
Q Consensus 238 ~~~~~~~~l~~~-~~~~i~v~~~~~~~~~---~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 311 (479)
....+...++-| ..|.|.+|+...++.. ....|.+.|.++.++.+ .|.+++.|+.+..|+..... ....
T Consensus 65 ~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~ 139 (541)
T KOG4547|consen 65 KASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRI 139 (541)
T ss_pred hccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeee
Confidence 011122223323 4566666666666643 34579999999998888 89999999999999987754 4667
Q ss_pred ecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc-------CCEEEEE-eCCCeEEEE
Q 011711 312 LKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-------DQYLLSC-SLDNTIKVW 381 (479)
Q Consensus 312 ~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-------~~~l~s~-s~dg~i~iw 381 (479)
.......+.++++. +..+++++ ++|++||+++++.+.+|.+|.++|.+++|. |.+++++ ..+..+.+|
T Consensus 140 ~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 140 WKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred eccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 77778888888886 66888876 689999999999999999999999998885 4565544 446668888
Q ss_pred EcCC
Q 011711 382 IMTE 385 (479)
Q Consensus 382 d~~~ 385 (479)
-++.
T Consensus 218 ~v~~ 221 (541)
T KOG4547|consen 218 VVEK 221 (541)
T ss_pred EEEc
Confidence 6654
No 247
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=3.9e-10 Score=119.12 Aligned_cols=210 Identities=15% Similarity=0.226 Sum_probs=149.2
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-c
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-L 232 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~-~ 232 (479)
++-.++.....++|+.||.+++|....+.+.+..-.+-...|+.+.|+.+|+.+..+..||.+.+|.... +.....+ +
T Consensus 2213 r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k~~~s~qch 2291 (2439)
T KOG1064|consen 2213 RMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-KPYTSWQCH 2291 (2439)
T ss_pred eecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-cceeccccC
Confidence 3345667778999999999999999988443333334458999999999999999999999999999873 3332222 2
Q ss_pred CCceeEEEeCCCEEEEE----cCCeEEEEEcCCCc--eEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCC
Q 011711 233 GAEVGSLICEGPWVFVG----MPNVVKAWHIESSA--EFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQN 304 (479)
Q Consensus 233 ~~~~~~~~~~~~~l~~~----~~~~i~v~~~~~~~--~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~ 304 (479)
......+.+-+..+++. .++.+.+||..-.. ......|.+.++++++.|+ .|++|+.+|.|++||++..+
T Consensus 2292 nk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq-- 2369 (2439)
T KOG1064|consen 2292 NKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ-- 2369 (2439)
T ss_pred CccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH--
Confidence 33334444444444432 45789999975443 3344789999999999998 89999999999999998754
Q ss_pred cccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCC-----c--EEEEEc-CCEEEEEeCCC
Q 011711 305 PFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA-----P--MSLLCW-DQYLLSCSLDN 376 (479)
Q Consensus 305 ~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~-----v--~~~~~~-~~~l~s~s~dg 376 (479)
+.+.++. +. ...++++|+..|.|+||++.....++++...... . +.+... .+.|++|+.||
T Consensus 2370 ---l~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2370 ---LRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred ---HHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCC
Confidence 2333332 22 3778999999999999999998887777532110 1 122222 46777777776
Q ss_pred e
Q 011711 377 T 377 (479)
Q Consensus 377 ~ 377 (479)
+
T Consensus 2439 ~ 2439 (2439)
T KOG1064|consen 2439 T 2439 (2439)
T ss_pred C
Confidence 3
No 248
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=7e-08 Score=94.71 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=74.4
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCC-EEEEEeC----------CCeEEEEEcCCCcceEEe--cc
Q 011711 328 RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQ-YLLSCSL----------DNTIKVWIMTEEGNLEVA--YT 394 (479)
Q Consensus 328 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~s~----------dg~i~iwd~~~~~~~~~~--~~ 394 (479)
+++.|...|+|.++|+.++..-..+..|...|.++.|.|. .+++.+. -+.+.+-|++++...... ..
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 5888999999999999999999999999999999999853 4554433 345778888887543322 11
Q ss_pred -ccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCC
Q 011711 395 -HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSF 433 (479)
Q Consensus 395 -~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 433 (479)
...++..+.. +..++ +++..-.|.-+.+||+++.
T Consensus 519 ~despI~~irv----S~~~~-yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 519 PDESPIRAIRV----SSSGR-YLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred CCcCcceeeee----cccCc-eEEEEecccchHHHhhccc
Confidence 2233444444 36666 8888889999999999653
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.15 E-value=2e-09 Score=95.80 Aligned_cols=249 Identities=16% Similarity=0.198 Sum_probs=174.1
Q ss_pred ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEEC-CCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcC
Q 011711 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC-HTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIE 260 (479)
Q Consensus 182 ~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~ 260 (479)
+.+++.++||.+.|++...-|...-+++.+.|.++|||-- +.++.-..+.+
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~---------------------------- 65 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH---------------------------- 65 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh----------------------------
Confidence 3678889999999999999888889999999999999953 33332222211
Q ss_pred CCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC
Q 011711 261 SSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN 336 (479)
Q Consensus 261 ~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg 336 (479)
.....+.++.+..+ .|++|-.+|++.-+.+...-.. ....+....|...+..+.|+ ...+++.+.|.
T Consensus 66 --------~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnk-m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk 136 (404)
T KOG1409|consen 66 --------YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNK-MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDK 136 (404)
T ss_pred --------hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhh-cchhhhhhhhhcceeeEEecCCceeEEEecccc
Confidence 23456777888777 8999999999999887654322 34456677899999999997 77899999998
Q ss_pred eEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCC--cceEEeccccCccceEEEeeeeCCCCCc
Q 011711 337 TIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEE--GNLEVAYTHNEDHGVLALGGLNDPDGNP 414 (479)
Q Consensus 337 ~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (479)
.+.---.+.+..+..+.-. ....++.++=.+...|...|.|.+-.+... ..+..+..|...+.... |++...
T Consensus 137 ~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~----Wd~~~~- 210 (404)
T KOG1409|consen 137 QFAWHCTESGNRLGGYNFE-TPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLK----WDPGQR- 210 (404)
T ss_pred ceEEEeeccCCcccceEee-ccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEE----EcCCCc-
Confidence 8765555655544332211 111222222115666777777776655433 33444455555544443 456555
Q ss_pred EEEEEeCCCeEEEeecCCCceee--eeeccCceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 415 VLICSCNDDSVHLYELPSFMERG--RIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 415 ~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
++.++..|..|.+||+...+.+. ...|.+.|..+...+-- .+++++.||.|.+|+++..
T Consensus 211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 89999999999999997654433 33457888888888777 9999999999999999764
No 250
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=6e-10 Score=117.72 Aligned_cols=209 Identities=17% Similarity=0.230 Sum_probs=160.0
Q ss_pred CCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCc--eeEEE--eC-C
Q 011711 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE--VGSLI--CE-G 243 (479)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~--~~~~~--~~-~ 243 (479)
-++...-|..+-+ -..++.|-..|.++.=+|...+-+||+.||.|++|....++.+..+..... +..+. .. +
T Consensus 2188 ~~~~~~tq~~~~~---~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn 2264 (2439)
T KOG1064|consen 2188 LPWLGSTQTSRGA---SVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN 2264 (2439)
T ss_pred CCccccceecccc---eeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC
Confidence 3444444544332 122344567788888889999999999999999999999999988876554 22222 24 4
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEe---CCCcEEEEEccCCCCCcccceeeecCCCCCeE
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGA---QDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~ 320 (479)
++-++..||.+.+|..........+.|......+.|-...+++++ .++.+.+||..-.... ..+. ..|.+.++
T Consensus 2265 k~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~--s~v~--~~H~~gaT 2340 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMN--SLVH--TCHDGGAT 2340 (2439)
T ss_pred ceeeeccCCceeecccCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCccc--ceee--eecCCCce
Confidence 455667999999999997777778889988999998888777764 5688999997655431 2222 78999999
Q ss_pred EEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEe
Q 011711 321 CLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVA 392 (479)
Q Consensus 321 ~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 392 (479)
++++- .+.|++|+.+|.|++||++..+++++++. +. ...++++++..|.|+||++.....+..+
T Consensus 2341 ~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred EEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 99996 77899999999999999999888877775 22 4678999999999999999887555443
No 251
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=8.9e-08 Score=94.48 Aligned_cols=215 Identities=10% Similarity=0.036 Sum_probs=126.1
Q ss_pred CCCEEEEEcC---CeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeC-C--CcEEEEEccCCCCCcccceeeec
Q 011711 242 EGPWVFVGMP---NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ-D--GNILVWKGIPNTQNPFQLAALLK 313 (479)
Q Consensus 242 ~~~~l~~~~~---~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~-d--g~i~iwd~~~~~~~~~~~~~~~~ 313 (479)
.+++.++... ..|.++|........+..+...+.+..|+|+ .|+..+. + ..|++||+.++.. ..+.
T Consensus 163 ~~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~------~~l~ 236 (427)
T PRK02889 163 STRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR------RVVA 236 (427)
T ss_pred ccEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE------EEee
Confidence 4555555532 4677888766665556667778889999988 6665543 2 3599999987642 1222
Q ss_pred CCCCCeEEEEEc--CCEEE-EEeCCCeEEEE--ECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeC-CCeEEEEEcC-
Q 011711 314 GHTRPVTCLAVG--GKRLY-SGSMDNTIRVW--DLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL-DNTIKVWIMT- 384 (479)
Q Consensus 314 ~h~~~i~~l~~~--~~~l~-sgs~dg~I~iw--d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~-dg~i~iwd~~- 384 (479)
.....+.+..|+ ++.++ +.+.+|...+| |+.+++ ...+..+........|+ |+.|+..+. +|...+|.+.
T Consensus 237 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 237 NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA 315 (427)
T ss_pred cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence 233445567786 66665 56778776665 455444 45555554444445555 777776554 4666666553
Q ss_pred -CCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCC--eEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEc
Q 011711 385 -EEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD--SVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGD 460 (479)
Q Consensus 385 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~ 460 (479)
++. ...+....... ....++|+|+.+++++..++ .|.+||+.+++... +..........|+||| .|+..+
T Consensus 316 ~~g~-~~~lt~~g~~~----~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 316 SGGA-AQRVTFTGSYN----TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred CCCc-eEEEecCCCCc----CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEE
Confidence 332 22222222111 12345799995444443333 69999998876543 3333345678999999 554444
Q ss_pred -CCCcEEEEE
Q 011711 461 -GTGMLSVWK 469 (479)
Q Consensus 461 -~dg~v~vw~ 469 (479)
..|.-.++-
T Consensus 390 ~~~g~~~l~~ 399 (427)
T PRK02889 390 QQGGRSVLAA 399 (427)
T ss_pred ecCCCEEEEE
Confidence 444433443
No 252
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.13 E-value=8e-08 Score=87.08 Aligned_cols=214 Identities=17% Similarity=0.108 Sum_probs=140.1
Q ss_pred CCCcEEEEECCCCceEEEEecCCc---ee-EEE-eCCCEEEEEcCCeEEEEEcCCCceEEecCCCccE-EEEEEcCCEEE
Q 011711 212 RDGTVQLWDCHTGQSASVINLGAE---VG-SLI-CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEV-YSMVVANEMLF 285 (479)
Q Consensus 212 ~Dg~v~vwd~~~~~~~~~~~~~~~---~~-~~~-~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~ 285 (479)
.+|+|..||..+|+.+........ .. ... .++.+++...++.+..||..+++..-.......+ .......+.++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 368999999999999999986432 22 123 3444555569999999999988875322212221 11356677888
Q ss_pred EEeCCCcEEEEEccCCCCCcccceee-ecCC----C-CCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCc
Q 011711 286 AGAQDGNILVWKGIPNTQNPFQLAAL-LKGH----T-RPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAP 359 (479)
Q Consensus 286 ~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~h----~-~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v 359 (479)
+++.++.++.+|..++.. ... .... . .......+.++.++.+..++.|..+|+++|+.+..........
T Consensus 81 v~~~~~~l~~~d~~tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKV-----LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEETTSEEEEEETTTSCE-----EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccceeeeEecccCCcce-----eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 888999999999888764 222 1111 1 1222344558999999999999999999999999887754331
Q ss_pred -----------EEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 011711 360 -----------MSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (479)
Q Consensus 360 -----------~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iw 428 (479)
..+...+..++.++.++.+.-+|+.+++.+.... ....... . ..++. .+++++.++.|..|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~----~~~~~-~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-P----SVDGG-TLYVTSSDGRLYAL 227 (238)
T ss_dssp S--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-E----ECCCT-EEEEEETTTEEEEE
T ss_pred CcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-c----eeeCC-EEEEEeCCCEEEEE
Confidence 2333345588888888864444999887553222 2221111 1 25566 55556689999999
Q ss_pred ecCCCceeee
Q 011711 429 ELPSFMERGR 438 (479)
Q Consensus 429 d~~~~~~~~~ 438 (479)
|+.+++...+
T Consensus 228 d~~tG~~~W~ 237 (238)
T PF13360_consen 228 DLKTGKVVWQ 237 (238)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCCEEeE
Confidence 9999987654
No 253
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=9.3e-09 Score=92.19 Aligned_cols=187 Identities=19% Similarity=0.281 Sum_probs=128.2
Q ss_pred ccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCC-
Q 011711 272 GEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDT- 345 (479)
Q Consensus 272 ~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~- 345 (479)
..+..++|++. .++++..|-.|++||-..... .......+..|+|++|- +..|++|+.. .|.+|....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-----t~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~t 172 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-----TKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRT 172 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCC-----ceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcc
Confidence 45667888877 688899999999999665321 12222345689999994 6778888765 588997643
Q ss_pred ---CcE----------EEEEeCCCCCcEEEEEc--CCEEEEEeC-CCeEEEEEcCCCcceEEeccccCccceEEEeeeeC
Q 011711 346 ---LEA----------VMTLNGHTDAPMSLLCW--DQYLLSCSL-DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLND 409 (479)
Q Consensus 346 ---~~~----------~~~~~~h~~~v~~~~~~--~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (479)
... +....+| ..|+++.+. +..+++++. |..|.|||.+++............... +.|+
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~sl----LkwS 247 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSL----LKWS 247 (445)
T ss_pred cccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceee----EEEc
Confidence 111 1222344 568999987 667777776 678999999998766555333333333 3457
Q ss_pred CCCCcEEEEEeCCCeEEEeec-CCCceeeeeeccCceEEEEECCCc--eEEEEcCCCcEEEEEecc
Q 011711 410 PDGNPVLICSCNDDSVHLYEL-PSFMERGRIFSRREVRVIETGPDG--LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 410 ~~~~~~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~ 472 (479)
|||. ++.++.-|+..++|+. ++.....-....+.|...+|+|+| +|++.+..-. +|.+..
T Consensus 248 Pdgd-~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f 310 (445)
T KOG2139|consen 248 PDGD-VLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTF 310 (445)
T ss_pred CCCC-EEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCce--EEEEee
Confidence 9999 6667778999999954 444444445557799999999999 6666665544 454433
No 254
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.11 E-value=1.4e-07 Score=85.53 Aligned_cols=211 Identities=15% Similarity=0.069 Sum_probs=144.9
Q ss_pred CCeEEEeecCCCceeeEEEec---ccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCcee--EEEeCCC
Q 011711 170 CRFWHSWFCGEGFTMLAKLEG---HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG--SLICEGP 244 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~~---H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~--~~~~~~~ 244 (479)
++.|..||..++ +.+....- ....+ +. ..+++..+++++.++.|..||..+|+.+..+....... ....++.
T Consensus 2 ~g~l~~~d~~tG-~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTG-KELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGR 78 (238)
T ss_dssp TSEEEEEETTTT-EEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTE
T ss_pred CCEEEEEECCCC-CEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccc
Confidence 688999999988 66666643 22222 11 22357788888999999999999999999988765532 3445666
Q ss_pred EEEEEcCCeEEEEEcCCCceEEe--cCC-----CccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC
Q 011711 245 WVFVGMPNVVKAWHIESSAEFSL--DGP-----VGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~~~~~~--~~~-----~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~ 317 (479)
+++...++.+..+|..+++..-. ... ........+..+.++++..++.|..+|+.+++. +........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-----~w~~~~~~~ 153 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-----LWKYPVGEP 153 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE-----EEEEESSTT
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE-----EEEeecCCC
Confidence 66677888999999999887543 111 112334555677899999999999999988753 233322221
Q ss_pred C----e-------EEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEE-EEEcCCEEEEEeCCCeEEEEEcCC
Q 011711 318 P----V-------TCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMS-LLCWDQYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 318 ~----i-------~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~-~~~~~~~l~s~s~dg~i~iwd~~~ 385 (479)
. + ..+.+.+..++.++.++.+..+|+.+++.+.+.. ...... ....+..|+.++.++.|..||+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred CCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 1 1 2333445588888888864444999999776444 223333 555688888888999999999999
Q ss_pred CcceE
Q 011711 386 EGNLE 390 (479)
Q Consensus 386 ~~~~~ 390 (479)
++.+.
T Consensus 232 G~~~W 236 (238)
T PF13360_consen 232 GKVVW 236 (238)
T ss_dssp TEEEE
T ss_pred CCEEe
Confidence 87553
No 255
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.10 E-value=2.6e-08 Score=88.30 Aligned_cols=265 Identities=15% Similarity=0.106 Sum_probs=165.2
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE--eCCCEEEEE--cCCeEEEEEcCCCceE-EecCCCc
Q 011711 198 IALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVG--MPNVVKAWHIESSAEF-SLDGPVG 272 (479)
Q Consensus 198 l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~--~~~~i~v~~~~~~~~~-~~~~~~~ 272 (479)
.+|||+|+++|+++.- .+.|-|.++-+..+.+..-..+..+. .+..++.++ .++.|.+|++...+-. .++....
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a 92 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA 92 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence 5789999999999876 78888888877655544333333333 355555544 6779999999887754 5667778
Q ss_pred cEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCC------------
Q 011711 273 EVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD------------ 335 (479)
Q Consensus 273 ~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~d------------ 335 (479)
.+.++.|+|+ .|.+..-+-.|.+|.+.+... ..++-.+..+..++|+ |++.+..+.-
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~------~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG------YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEecccee------EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence 8999999998 677788899999999987642 1122222334455554 5555444321
Q ss_pred ------------------------CeEEEEECCCCcEEEEEeCCC-CCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcc
Q 011711 336 ------------------------NTIRVWDLDTLEAVMTLNGHT-DAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN 388 (479)
Q Consensus 336 ------------------------g~I~iwd~~~~~~~~~~~~h~-~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~ 388 (479)
..+.+||---.-.+. .-|. -.+..+.+. +++|+.|+.|+.+|+.+--+-+.
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~ 244 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP 244 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee--eeeeccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence 123333321111111 1111 235555665 78999999999988754211100
Q ss_pred ------------------------------------------------------------eEEecc--ccCccceEEEee
Q 011711 389 ------------------------------------------------------------LEVAYT--HNEDHGVLALGG 406 (479)
Q Consensus 389 ------------------------------------------------------------~~~~~~--~~~~~~~~~~~~ 406 (479)
+..+.. .......-+-.+
T Consensus 245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l 324 (447)
T KOG4497|consen 245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL 324 (447)
T ss_pred hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence 000000 000001111122
Q ss_pred eeCCCCCcEEEEEeC--CCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 407 LNDPDGNPVLICSCN--DDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 407 ~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
.|++|.. ++++-.. -+.+-+||+...+.-..+....+|+...|.|.. .|+.+.....+++|..+-
T Consensus 325 afs~Ds~-y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 325 AFSCDST-YAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred eecCCce-EEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 3467765 6665422 256899999998888888889999999999998 777777777799997643
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.08 E-value=1.3e-07 Score=93.39 Aligned_cols=210 Identities=16% Similarity=0.039 Sum_probs=126.4
Q ss_pred CCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCC---CcEEEEECCCCceEEEEecCCceeEEEeCCCE
Q 011711 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GTVQLWDCHTGQSASVINLGAEVGSLICEGPW 245 (479)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
....|.++|.... ..+.+..+...+...+|+|||++|+.++.+ ..|.+||+.+++.....
T Consensus 168 ~~~~l~~~d~~g~--~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~--------------- 230 (417)
T TIGR02800 168 RRYELQVADYDGA--NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA--------------- 230 (417)
T ss_pred CcceEEEEcCCCC--CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee---------------
Confidence 3456788887533 345566677789999999999999987654 37888888877543221
Q ss_pred EEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEE-EEeCCC--cEEEEEccCCCCCcccceeeecCCCCCeE
Q 011711 246 VFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF-AGAQDG--NILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (479)
Q Consensus 246 l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~-~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~h~~~i~ 320 (479)
.+...+.++.|+++ .|+ +...++ .|++||+.++.. ..+..+.....
T Consensus 231 -----------------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~------~~l~~~~~~~~ 281 (417)
T TIGR02800 231 -----------------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL------TRLTNGPGIDT 281 (417)
T ss_pred -----------------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE------EECCCCCCCCC
Confidence 12233445677776 443 444444 588888876542 22333444444
Q ss_pred EEEEc--CCEEEEEeC-CC--eEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCC---eEEEEEcCCCcceE
Q 011711 321 CLAVG--GKRLYSGSM-DN--TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN---TIKVWIMTEEGNLE 390 (479)
Q Consensus 321 ~l~~~--~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg---~i~iwd~~~~~~~~ 390 (479)
...|+ ++.|+..+. ++ .|+++|+.+++.. .+..+........++ +++++.++.++ .|.+||+.++.. .
T Consensus 282 ~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~ 359 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-R 359 (417)
T ss_pred CEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-E
Confidence 55664 777766554 33 6888898877643 344344444555554 78888887776 788999877432 3
Q ss_pred EeccccCccceEEEeeeeCCCCCcEEEEEeCCC--eEEEeecC
Q 011711 391 VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD--SVHLYELP 431 (479)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~ 431 (479)
.+.... ... ...++|+|+.++++...++ .+.+.+..
T Consensus 360 ~l~~~~-~~~----~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 360 VLTDTG-LDE----SPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EccCCC-CCC----CceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 332221 111 2245799985555554443 35555543
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.08 E-value=1.1e-08 Score=89.28 Aligned_cols=187 Identities=10% Similarity=0.073 Sum_probs=123.7
Q ss_pred EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC---CeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEE--EEEeCC
Q 011711 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR---PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV--MTLNGH 355 (479)
Q Consensus 283 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~---~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~h 355 (479)
.++-+..+|.|.++........ -.+..+..-.- ...++.|+ +..++++-.+|.+.+-+....... ++++.|
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss--~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H 164 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESS--VHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVH 164 (339)
T ss_pred eeeeccccceEEEEeeccceee--eeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccc
Confidence 6777888899999976543220 00111111111 22345554 778999999999997776655444 488999
Q ss_pred CCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC
Q 011711 356 TDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 356 ~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 432 (479)
.-......++ ++.+.+|+.|+.+..||++.+.. .+..+...+..-..+...+|....++++|+.|..|++||.++
T Consensus 165 e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~--~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 165 EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT--FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred ceeeeeeecccCCCceEEecCCCceEEEEEecCCcc--eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 9988888887 67899999999999999994432 222222222222233333566666999999999999999984
Q ss_pred -CceeeeeeccCceEEEEECCCc--eEEEEcCCCcEEEEEeccC
Q 011711 433 -FMERGRIFSRREVRVIETGPDG--LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 433 -~~~~~~~~~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~~ 473 (479)
++++..-...+.|+.+..+|.- .++.++.-.-.+|-+.+.+
T Consensus 243 m~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 243 MGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred ccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 5666666667899999999965 4444444334566666554
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.06 E-value=3.4e-08 Score=88.04 Aligned_cols=162 Identities=12% Similarity=0.151 Sum_probs=99.7
Q ss_pred cCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEE---EEeCCC-----CCcEEEEEc---CCEEEEEeCCCeEEE
Q 011711 313 KGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVM---TLNGHT-----DAPMSLLCW---DQYLLSCSLDNTIKV 380 (479)
Q Consensus 313 ~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~---~~~~h~-----~~v~~~~~~---~~~l~s~s~dg~i~i 380 (479)
.+|.-.|.+|.++ ....+..+.|=.|.+|++.--..-. .++.+. ..|++..|+ .+.++-.+..|+|++
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 4688889999997 4444445578899999987433222 222222 235566665 467888888999999
Q ss_pred EEcCCCcceE---Eecc-ccCc--------cceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC-Cceeeeee-c-----
Q 011711 381 WIMTEEGNLE---VAYT-HNED--------HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS-FMERGRIF-S----- 441 (479)
Q Consensus 381 wd~~~~~~~~---~~~~-~~~~--------~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~-~----- 441 (479)
-|++...... .+.. ...+ +........++++|+ ++++- .=-+|++||++. .+++..+. |
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr-yilsR-Dyltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR-YILSR-DYLTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc-EEEEe-ccceeEEEeccccCCcceEEeehHhHHH
Confidence 9998432111 0111 0000 111112234468888 56544 237899999954 33333332 1
Q ss_pred -------cCc---eEEEEECCCc-eEEEEcCCCcEEEEEeccCCCC
Q 011711 442 -------RRE---VRVIETGPDG-LFFTGDGTGMLSVWKILAKPNA 476 (479)
Q Consensus 442 -------~~~---v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~~ 476 (479)
.+. -..++|+.++ .++||+....++++++..+.+.
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence 222 3467899888 9999999999999997665543
No 259
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=1.1e-09 Score=97.49 Aligned_cols=151 Identities=23% Similarity=0.331 Sum_probs=120.4
Q ss_pred CCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcC--CEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCe
Q 011711 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN--EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (479)
Q Consensus 242 ~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i 319 (479)
.+..+++|.+..+-+-|++++....+. ..+.|.++.|.. ++++.|+.+|.|..+|++...+....+...+ -|...|
T Consensus 224 ~gyhfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssv 301 (425)
T KOG2695|consen 224 MGYHFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSV 301 (425)
T ss_pred ceeeecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcch
Confidence 344566788899999999999887776 677888888876 3999999999999999998755434444443 488899
Q ss_pred EEEEE---cCCEEEEEeCCCeEEEEECCCCcE---EEEEeCCCCCcEEEEEc----CCEEEEEeCCCeEEEEEcCCCcce
Q 011711 320 TCLAV---GGKRLYSGSMDNTIRVWDLDTLEA---VMTLNGHTDAPMSLLCW----DQYLLSCSLDNTIKVWIMTEEGNL 389 (479)
Q Consensus 320 ~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~ 389 (479)
+|+.. ++.+|++.+.+|+|++||++--++ +.++.+|...-.-+.+. +..+++++.|-..+||.++.+..+
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 98765 689999999999999999998777 99999997654443333 678999999999999999988766
Q ss_pred EEecc
Q 011711 390 EVAYT 394 (479)
Q Consensus 390 ~~~~~ 394 (479)
..+..
T Consensus 382 ~tipf 386 (425)
T KOG2695|consen 382 CTIPF 386 (425)
T ss_pred eccCC
Confidence 55544
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.03 E-value=4.4e-06 Score=80.04 Aligned_cols=276 Identities=16% Similarity=0.188 Sum_probs=162.1
Q ss_pred CCeEEEeecCCCceeeEEEe--cccccEEEEEeCCCCCEEEEEeC----CCcEEEEECCCC--c--eEEEEe-cCCceeE
Q 011711 170 CRFWHSWFCGEGFTMLAKLE--GHKKAVSGIALPLRSDKLYSGSR----DGTVQLWDCHTG--Q--SASVIN-LGAEVGS 238 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~~~--~H~~~V~~l~~s~~~~~l~s~s~----Dg~v~vwd~~~~--~--~~~~~~-~~~~~~~ 238 (479)
.+.|.+|++++....+.... .-...-..++++|++++|+++.. ++.|..|++... + .+.... .+.....
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 37899999833212222222 23455677889999999999987 479999988764 2 333333 2333333
Q ss_pred EE--eCCCEEEEE--cCCeEEEEEcCCCceE-Ee---c-----------CCCccEEEEEEcCC--EEEEE-eCCCcEEEE
Q 011711 239 LI--CEGPWVFVG--MPNVVKAWHIESSAEF-SL---D-----------GPVGEVYSMVVANE--MLFAG-AQDGNILVW 296 (479)
Q Consensus 239 ~~--~~~~~l~~~--~~~~i~v~~~~~~~~~-~~---~-----------~~~~~v~~~~~~~~--~l~~g-~~dg~i~iw 296 (479)
+. +++++++++ .++.+.++++.....+ .. . .......++.++|+ ++++. -....|.+|
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 33 488888877 6899999999874322 11 1 22355788999988 45443 445689999
Q ss_pred EccCCCCCcccceeeec-CCCCCeEEEEEc--CCEEEEE-eCCCeEEEEECC--CCc--EEEEEeCC----C--CCcEEE
Q 011711 297 KGIPNTQNPFQLAALLK-GHTRPVTCLAVG--GKRLYSG-SMDNTIRVWDLD--TLE--AVMTLNGH----T--DAPMSL 362 (479)
Q Consensus 297 d~~~~~~~~~~~~~~~~-~h~~~i~~l~~~--~~~l~sg-s~dg~I~iwd~~--~~~--~~~~~~~h----~--~~v~~~ 362 (479)
++...... +.....+. .....-..+.|+ ++++++. -.+++|.++++. +++ .+..+... . .....+
T Consensus 172 ~~~~~~~~-l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 172 DIDDDTGK-LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp EE-TTS-T-EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred EEeCCCce-EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 99776521 11122222 334556788886 6676554 467889999988 442 33333321 1 134455
Q ss_pred EEc--CCEEEEEe-CCCeEEEEEcCC-CcceEEeccc---cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC--CC
Q 011711 363 LCW--DQYLLSCS-LDNTIKVWIMTE-EGNLEVAYTH---NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP--SF 433 (479)
Q Consensus 363 ~~~--~~~l~s~s-~dg~i~iwd~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~ 433 (479)
.++ +++|+++. .++.|.+|+++. ...+...... ......+. .+|+|+.++++...++.|.+|+++ ++
T Consensus 251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~----~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 251 AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFA----FSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEE----E-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEE----EeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 555 77776655 578999999943 2333333221 12122333 369999777777788899999774 55
Q ss_pred ceeeee--eccCceEEEEE
Q 011711 434 MERGRI--FSRREVRVIET 450 (479)
Q Consensus 434 ~~~~~~--~~~~~v~~l~~ 450 (479)
.+...- ..-....|+.|
T Consensus 327 ~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 327 KLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEEEEESSSEEEEEE
T ss_pred cEEEecccccCCCCEEEeC
Confidence 543332 23455666655
No 261
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.03 E-value=3.5e-07 Score=90.41 Aligned_cols=197 Identities=14% Similarity=0.066 Sum_probs=120.1
Q ss_pred eEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCC---CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--
Q 011711 253 VVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD---GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-- 325 (479)
Q Consensus 253 ~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-- 325 (479)
.|.++|........+..+...+....|+++ .|+.+..+ ..|++||+.++.. ..+..+...+.++.|+
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~------~~~~~~~~~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR------EKVASFPGMNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE------EEeecCCCCccceEECCC
Confidence 688888876666666666677888899988 66655533 4799999887642 2233344555667775
Q ss_pred CCEEE-EEeCCC--eEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeC-CC--eEEEEEcCCCcceEEeccccC
Q 011711 326 GKRLY-SGSMDN--TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL-DN--TIKVWIMTEEGNLEVAYTHNE 397 (479)
Q Consensus 326 ~~~l~-sgs~dg--~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~ 397 (479)
++.|+ +.+.++ .|++||+.+++.. .+..+........+. ++.|+..+. ++ .|.++|+.+.+. ..+.....
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~ 322 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGG 322 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCC
Confidence 66655 445444 5899999887643 344444333344444 777776554 33 577788776543 23332222
Q ss_pred ccceEEEeeeeCCCCCcEEEEEeCCC---eEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCC
Q 011711 398 DHGVLALGGLNDPDGNPVLICSCNDD---SVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTG 463 (479)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg 463 (479)
... ...++|+|+. ++.++.++ .|.+||+.++... .+..........|+||| .|+..+.++
T Consensus 323 ~~~----~~~~spdg~~-i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNA----SPSWSPDGDL-IAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred Ccc----CeEECCCCCE-EEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeCC
Confidence 222 2345799984 44454554 7889998875442 22223334566899999 666555543
No 262
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1.2e-09 Score=102.78 Aligned_cols=217 Identities=18% Similarity=0.216 Sum_probs=147.4
Q ss_pred eeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCC
Q 011711 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS 262 (479)
Q Consensus 184 ~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~ 262 (479)
.+..+.||+..|..++--.+.+.+++++.|++|++|.++..- ...+ +.
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t-------------------------------sa 775 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT-------------------------------SA 775 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc-------------------------------ce
Confidence 356788999999999887788899999999999999986431 1100 01
Q ss_pred ceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEE-cCCEEEEE-eCCCeEEE
Q 011711 263 AEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV-GGKRLYSG-SMDNTIRV 340 (479)
Q Consensus 263 ~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~-~~~~l~sg-s~dg~I~i 340 (479)
-+++...|...|.++.+-.+.-.+++.||-|.+||.--+.......-..-.+....|.|+.- +...++.| +...+|++
T Consensus 776 CQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl 855 (1034)
T KOG4190|consen 776 CQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKL 855 (1034)
T ss_pred eeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhhee
Confidence 12456789999999999988666677899999999765543100001111222344555544 34455544 78999999
Q ss_pred EECCCCcEEEEEeC-----CCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCC
Q 011711 341 WDLDTLEAVMTLNG-----HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGN 413 (479)
Q Consensus 341 wd~~~~~~~~~~~~-----h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (479)
+|.+..+....++. ....+.+++.- |+.++.+-..|.|.+.|.+++..+..........-.++. |..+
T Consensus 856 ~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-----psdq 930 (1034)
T KOG4190|consen 856 FDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-----PSDQ 930 (1034)
T ss_pred eecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-----chhH
Confidence 99999887766642 23345555554 899999999999999999998766555444333222222 5555
Q ss_pred cEEEEEeCCCeEEE-eecCCCceee
Q 011711 414 PVLICSCNDDSVHL-YELPSFMERG 437 (479)
Q Consensus 414 ~~l~s~~~dg~v~i-wd~~~~~~~~ 437 (479)
.++....|.++.+ |..-++....
T Consensus 931 -~L~~saldHslaVnWhaldgimh~ 954 (1034)
T KOG4190|consen 931 -ALAQSALDHSLAVNWHALDGIMHL 954 (1034)
T ss_pred -HHHhhcccceeEeeehhcCCeeee
Confidence 6777777888888 8766554433
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=4e-07 Score=90.27 Aligned_cols=228 Identities=14% Similarity=0.060 Sum_probs=132.3
Q ss_pred eEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCC---CcEEEEECCCCceEEEEecCCceeEEEeCCCEEEE
Q 011711 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFV 248 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (479)
.|.++|.+.. ..+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++......
T Consensus 180 ~l~~~d~~g~--~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~----------------- 240 (430)
T PRK00178 180 TLQRSDYDGA--RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN----------------- 240 (430)
T ss_pred EEEEECCCCC--CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-----------------
Confidence 4667776543 245566677889999999999999877644 357888887775433211
Q ss_pred EcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEE-EEeCCC--cEEEEEccCCCCCcccceeeecCCCCCeEEEE
Q 011711 249 GMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF-AGAQDG--NILVWKGIPNTQNPFQLAALLKGHTRPVTCLA 323 (479)
Q Consensus 249 ~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~-~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~ 323 (479)
..+.+....|+|+ .|+ +...+| .|+++|+.++.. ..+..+........
T Consensus 241 ---------------------~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~------~~lt~~~~~~~~~~ 293 (430)
T PRK00178 241 ---------------------FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL------SRVTNHPAIDTEPF 293 (430)
T ss_pred ---------------------CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe------EEcccCCCCcCCeE
Confidence 1122334667766 444 444454 588888877542 22334444455567
Q ss_pred Ec--CCEEEEEeC-CC--eEEEEECCCCcEEEEE-eCCCCCcEEEEEcCCEEEEEeCC-C--eEEEEEcCCCcceEEecc
Q 011711 324 VG--GKRLYSGSM-DN--TIRVWDLDTLEAVMTL-NGHTDAPMSLLCWDQYLLSCSLD-N--TIKVWIMTEEGNLEVAYT 394 (479)
Q Consensus 324 ~~--~~~l~sgs~-dg--~I~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~ 394 (479)
|+ ++.++..+. +| .|+++|+.+++..... .+.......+..+++.|+..+.+ + .|.++|+.+++.. .+..
T Consensus 294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~ 372 (430)
T PRK00178 294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD 372 (430)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC
Confidence 75 666655543 33 5888888887753322 22222223344457787766643 3 5888998876532 2222
Q ss_pred ccCccceEEEeeeeCCCCCcEEEEEeCCC--eEEEeecCCCceeeeee-ccCceEEEEECC
Q 011711 395 HNEDHGVLALGGLNDPDGNPVLICSCNDD--SVHLYELPSFMERGRIF-SRREVRVIETGP 452 (479)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~ 452 (479)
..... ...++|+|+.++++...++ .+.+++++.... ..+. ..+.+...+|+|
T Consensus 373 -~~~~~----~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~-~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 373 -TSLDE----SPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR-LPLPTAQGEVREPSWSP 427 (430)
T ss_pred -CCCCC----CceECCCCCEEEEEEecCCceEEEEEECCCCce-EECcCCCCCcCCCccCC
Confidence 11111 2345799996666655444 466667754333 2332 245567777776
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1e-07 Score=90.24 Aligned_cols=269 Identities=9% Similarity=0.070 Sum_probs=154.3
Q ss_pred cEEEEEeCCCCCEEEEEeC-----------CCcEEEEECCCCceEEEEecCC------ceeEEEeCCCEEEEEcCCeEEE
Q 011711 194 AVSGIALPLRSDKLYSGSR-----------DGTVQLWDCHTGQSASVINLGA------EVGSLICEGPWVFVGMPNVVKA 256 (479)
Q Consensus 194 ~V~~l~~s~~~~~l~s~s~-----------Dg~v~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~i~v 256 (479)
.|.-+.|||..+||+|-|. ...++|||+.+|...+.+.... ++...+.++++++.-..+.|.+
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisI 330 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISI 330 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEE
Confidence 4777899999999998763 1579999999999988887622 2334456899999888899999
Q ss_pred EEcCCCceEEec-CCCccEEEEEEcCC--EEEEEeC-----CCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--C
Q 011711 257 WHIESSAEFSLD-GPVGEVYSMVVANE--MLFAGAQ-----DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--G 326 (479)
Q Consensus 257 ~~~~~~~~~~~~-~~~~~v~~~~~~~~--~l~~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~ 326 (479)
|+..+-..+... -....|....|+|. .||-=.. -..+.+..+.+.. .+.+..-|.-.=..|.|. |
T Consensus 331 yEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~-----~iRt~nlfnVsDckLhWQk~g 405 (698)
T KOG2314|consen 331 YETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-----EIRTKNLFNVSDCKLHWQKSG 405 (698)
T ss_pred EecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc-----eeeeccceeeeccEEEeccCC
Confidence 998775544322 23345777788887 2221111 0123333333321 122222222222234442 6
Q ss_pred CEEEEE----------eCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEE-eC--CCeEEEEEcCC-CcceE
Q 011711 327 KRLYSG----------SMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSC-SL--DNTIKVWIMTE-EGNLE 390 (479)
Q Consensus 327 ~~l~sg----------s~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~-s~--dg~i~iwd~~~-~~~~~ 390 (479)
.+|+.- +.-..+.|+.++....--..-.-...|..++|. |+.+++- +. ..++.+|.+++ .....
T Consensus 406 dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 406 DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 665542 112234555555433222222244567777776 5544433 32 45788998874 22222
Q ss_pred EeccccCccceEEEeeeeCCCCCcEEEEE--eCCCeEEEeecCCCc--eeeeeeccCceEEEEECCCc-eEEEEcC----
Q 011711 391 VAYTHNEDHGVLALGGLNDPDGNPVLICS--CNDDSVHLYELPSFM--ERGRIFSRREVRVIETGPDG-LFFTGDG---- 461 (479)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~--~~dg~v~iwd~~~~~--~~~~~~~~~~v~~l~~s~~g-~l~sg~~---- 461 (479)
....... ..+-.+.|+|.|+.+++.+ |..|.+.++|+.-.. ..... .+...+.+.|.|.| +++|++.
T Consensus 486 lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-eh~~at~veWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 486 LVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-EHFAATEVEWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred hhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-cccccccceECCCCCEEEEeeehhhh
Confidence 2222221 2233345679999554443 457899999987422 22222 24567889999999 8888776
Q ss_pred --CCcEEEEEec
Q 011711 462 --TGMLSVWKIL 471 (479)
Q Consensus 462 --dg~v~vw~~~ 471 (479)
|.--++|++.
T Consensus 562 k~d~GYri~tfq 573 (698)
T KOG2314|consen 562 KVDNGYRIFTFQ 573 (698)
T ss_pred ccccceEEEEee
Confidence 3445666654
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=4.3e-07 Score=90.00 Aligned_cols=230 Identities=14% Similarity=0.013 Sum_probs=131.2
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCC-C--cEEEEECCCCceEEEEecCCceeEEEeCCCEEE
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD-G--TVQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D-g--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (479)
..|.++|.+.. . .+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++......
T Consensus 198 ~~l~i~d~dG~-~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~---------------- 259 (448)
T PRK04792 198 YQLMIADYDGY-N-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS---------------- 259 (448)
T ss_pred eEEEEEeCCCC-C-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC----------------
Confidence 35666676443 2 34455667889999999999998876543 2 57778887765432211
Q ss_pred EEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EE-EEEeCCCc--EEEEEccCCCCCcccceeeecCCCCCeEEE
Q 011711 248 VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--ML-FAGAQDGN--ILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (479)
Q Consensus 248 ~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l-~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l 322 (479)
..+......|+|+ .| ++...+|. |+++|+.++. ...+..+.......
T Consensus 260 ----------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~------~~~lt~~~~~~~~p 311 (448)
T PRK04792 260 ----------------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA------LTRITRHRAIDTEP 311 (448)
T ss_pred ----------------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC------eEECccCCCCccce
Confidence 1112234567776 34 44566665 7777876653 22334444455666
Q ss_pred EEc--CCEEEEEeC-CC--eEEEEECCCCcEEEE-EeCCCCCcEEEEEcCCEEEEEeC-CC--eEEEEEcCCCcceEEec
Q 011711 323 AVG--GKRLYSGSM-DN--TIRVWDLDTLEAVMT-LNGHTDAPMSLLCWDQYLLSCSL-DN--TIKVWIMTEEGNLEVAY 393 (479)
Q Consensus 323 ~~~--~~~l~sgs~-dg--~I~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~ 393 (479)
.|+ ++.++..+. ++ .|.++|+.+++.... +.++...-..+..++++|+..+. ++ .|.++|+.++.. ..+.
T Consensus 312 ~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt 390 (448)
T PRK04792 312 SWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLT 390 (448)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEcc
Confidence 775 666655443 33 577778887765432 23322222233444777766554 34 455677766543 2222
Q ss_pred cccCccceEEEeeeeCCCCCcEEEEEeCCCe--EEEeecCCCceeeeeec-cCceEEEEECCC
Q 011711 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDS--VHLYELPSFMERGRIFS-RREVRVIETGPD 453 (479)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~--v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~ 453 (479)
.... . ....++|+|+.++++...++. +.+++.+ +.....+.. .+.+...+|+|-
T Consensus 391 ~~~~-d----~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 391 STRL-D----ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCCC-C----CCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 2111 1 123457999977666655554 6677764 444444433 456777888873
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=3.8e-07 Score=86.68 Aligned_cols=323 Identities=11% Similarity=0.097 Sum_probs=181.4
Q ss_pred CCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEe------
Q 011711 93 PPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVK------ 166 (479)
Q Consensus 93 i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~------ 166 (479)
.+..++|++|+++|.+. ++.++|.+...... .....+ . ..-.+-+.+.+..+.+
T Consensus 37 ~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~----------~lt~~~--------~-~~~~L~fSP~g~yL~T~e~~~i 96 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSD-NQVVKVFEIATLKV----------VLCVEL--------K-KTYDLLFSPKGNYLLTWEPWAI 96 (566)
T ss_pred ceeEEEcCCCcEEEEEc-CCeEEEEEccCCcE----------EEEecc--------c-eeeeeeeccccccccccccccc
Confidence 46777799999999987 77888875333210 000000 0 0011222222222221
Q ss_pred -CC---CCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEE--E
Q 011711 167 -GD---ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL--I 240 (479)
Q Consensus 167 -g~---~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~--~ 240 (479)
+. ..-.+.+|+++++ .....++.-...=.+..|++|..+.+=-. .+.+.+|++...+....--....+..+ .
T Consensus 97 ~~~~~~~~pn~~v~~vet~-~~~s~~q~k~Q~~W~~qfs~dEsl~arlv-~nev~f~~~~~f~~~~~kl~~~~i~~f~lS 174 (566)
T KOG2315|consen 97 YGPKNASNPNVLVYNVETG-VQRSQIQKKMQNGWVPQFSIDESLAARLV-SNEVQFYDLGSFKTIQHKLSVSGITMLSLS 174 (566)
T ss_pred ccCCCCCCCceeeeeeccc-eehhheehhhhcCcccccccchhhhhhhh-cceEEEEecCCccceeeeeeccceeeEEec
Confidence 11 1345789999986 44444544332226889998887543222 367999998875433322222233322 2
Q ss_pred eC--CCEEEE------EcCCeEEEEEcCCCceEEecC----CCccEEEEEEcCC---EEEEE--eCC---------CcEE
Q 011711 241 CE--GPWVFV------GMPNVVKAWHIESSAEFSLDG----PVGEVYSMVVANE---MLFAG--AQD---------GNIL 294 (479)
Q Consensus 241 ~~--~~~l~~------~~~~~i~v~~~~~~~~~~~~~----~~~~v~~~~~~~~---~l~~g--~~d---------g~i~ 294 (479)
+. ...+++ |....+++|............ ....=..+.|++. +|+.+ .-| .+++
T Consensus 175 pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Ly 254 (566)
T KOG2315|consen 175 PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLY 254 (566)
T ss_pred CCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEE
Confidence 22 334444 345689999877332221111 1122234566644 33333 223 3577
Q ss_pred EEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEE--EEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCE
Q 011711 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLY--SGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQY 368 (479)
Q Consensus 295 iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~--sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~ 368 (479)
++++.... ...--.-.++|.++.|+ +..++ -|-+=-++.|||++ +.++..+. .++-.++.|+ |++
T Consensus 255 ll~t~g~s------~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 255 LLATQGES------VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNI 325 (566)
T ss_pred EEEecCce------EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCE
Confidence 77766321 12222347899999997 55444 46677899999987 46666654 3444555565 888
Q ss_pred EEEEeC---CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeC-----CCeEEEeecCCCceeeeee
Q 011711 369 LLSCSL---DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN-----DDSVHLYELPSFMERGRIF 440 (479)
Q Consensus 369 l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~ 440 (479)
|+.++- .|.|-|||+.+.+.+....... +..+.|+|||++++.+.+. |+.++||+... ..+....
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~------tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG-~~l~~~~ 398 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG-SLLHEKM 398 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhccccccCC------ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC-ceeehhh
Confidence 887776 4789999999866554443332 2334567999955554444 78899999854 3333222
Q ss_pred ccCceEEEEECCC
Q 011711 441 SRREVRVIETGPD 453 (479)
Q Consensus 441 ~~~~v~~l~~s~~ 453 (479)
-..+...+.|-|-
T Consensus 399 f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 399 FKSELLQVEWRPF 411 (566)
T ss_pred hhHhHhheeeeec
Confidence 2225667777653
No 267
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.99 E-value=6.7e-08 Score=83.95 Aligned_cols=128 Identities=10% Similarity=0.160 Sum_probs=85.2
Q ss_pred eEEEEECCC-CcEEEEEeC-CCCCcEEEEEc--CCEEEE--EeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCC
Q 011711 337 TIRVWDLDT-LEAVMTLNG-HTDAPMSLLCW--DQYLLS--CSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDP 410 (479)
Q Consensus 337 ~I~iwd~~~-~~~~~~~~~-h~~~v~~~~~~--~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (479)
...+|.++. ...+..+.. ..++|.+++|+ ++.+++ |..++.|.+||++ .+.+..+. ...... +.|+|
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~----i~wsP 110 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNT----ISWSP 110 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceE----EEECC
Confidence 344554422 234444543 34569999998 555443 4467899999996 33333332 223333 34679
Q ss_pred CCCcEEEEEe---CCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcC------CCcEEEEEeccC
Q 011711 411 DGNPVLICSC---NDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDG------TGMLSVWKILAK 473 (479)
Q Consensus 411 ~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~------dg~v~vw~~~~~ 473 (479)
+|+ ++++++ ..|.|.+||.++.+.+....+. .++.++|+||| +|+++.. |..++||++.-.
T Consensus 111 ~G~-~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 111 DGR-FLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCC-EEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 999 555554 3467999999988888777665 47899999999 7777654 889999998643
No 268
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.98 E-value=7.2e-09 Score=103.21 Aligned_cols=180 Identities=14% Similarity=0.247 Sum_probs=138.3
Q ss_pred cCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCc
Q 011711 280 ANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAP 359 (479)
Q Consensus 280 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v 359 (479)
.++.++.|+-...+..+|+++... .+...-..+.|+-+..+++++.+|...|+|.+-|+++.+.++++.+|++.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e-----~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKE-----TRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeeccccee-----eeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccce
Confidence 566888888888999999988653 333333444588888899999999999999999999999999999999999
Q ss_pred EEEEEcCCEEEEEeC---------CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeec
Q 011711 360 MSLLCWDQYLLSCSL---------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 360 ~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 430 (479)
..+...|+.|++++. |..|+|||++..+.+..+..+..+ ..+.+ .|.-...+++.+..|...+-|.
T Consensus 221 SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf----~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 221 SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRF----HPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred eeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhh----cccccceEEEEecccceeeccc
Confidence 999999999999986 556899999987665555444443 22222 2443346777788999999883
Q ss_pred ---CCCceeeeee--ccCceEEEEECCCc-eEEEEcCCCcEEEEE
Q 011711 431 ---PSFMERGRIF--SRREVRVIETGPDG-LFFTGDGTGMLSVWK 469 (479)
Q Consensus 431 ---~~~~~~~~~~--~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~ 469 (479)
.+........ ....+..+.+++++ .++.|..+|.|.+|.
T Consensus 296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3322211222 24559999999999 999999999999998
No 269
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.96 E-value=8.5e-08 Score=83.34 Aligned_cols=134 Identities=13% Similarity=0.220 Sum_probs=90.1
Q ss_pred CeEEEeecCCCceeeEEEec-ccccEEEEEeCCCCCEEEEE--eCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEE
Q 011711 171 RFWHSWFCGEGFTMLAKLEG-HKKAVSGIALPLRSDKLYSG--SRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~-H~~~V~~l~~s~~~~~l~s~--s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (479)
+...+|.++........+.- ..++|.+++|+|+|+.|+.. ..++.|.+||++ ++.+..+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~----------------- 98 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF----------------- 98 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee-----------------
Confidence 44555555433234444443 34579999999999987654 456799999986 4433332
Q ss_pred EEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeC---CCcEEEEEccCCCCCcccceeeecCCCCCeEEE
Q 011711 248 VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ---DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (479)
Q Consensus 248 ~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l 322 (479)
+...++.+.|+|+ ++++|+. .|.|.+||.++.. .+... +...++.+
T Consensus 99 ----------------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-----~i~~~--~~~~~t~~ 149 (194)
T PF08662_consen 99 ----------------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-----KISTF--EHSDATDV 149 (194)
T ss_pred ----------------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE-----Eeecc--ccCcEEEE
Confidence 2345678999988 7777653 4679999998542 23332 23457889
Q ss_pred EEc--CCEEEEEeC------CCeEEEEECCCCcEEEEE
Q 011711 323 AVG--GKRLYSGSM------DNTIRVWDLDTLEAVMTL 352 (479)
Q Consensus 323 ~~~--~~~l~sgs~------dg~I~iwd~~~~~~~~~~ 352 (479)
+|+ |+++++++. |..++||+.. |+.+...
T Consensus 150 ~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 150 EWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 997 999998874 7889999975 5555443
No 270
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=1.8e-06 Score=85.63 Aligned_cols=206 Identities=14% Similarity=0.078 Sum_probs=122.5
Q ss_pred eEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCC---CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--
Q 011711 253 VVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD---GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-- 325 (479)
Q Consensus 253 ~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-- 325 (479)
.|.++|.+......+..+...+....|+|+ .|+..+.+ ..|.+||+.++.. ..+......+....|+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~------~~l~~~~g~~~~~~~SpD 253 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR------EQITNFEGLNGAPAWSPD 253 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE------EEccCCCCCcCCeEECCC
Confidence 477888887776666667778899999988 56554433 3688999887642 1122223334456775
Q ss_pred CCEEE-EEeCCC--eEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeC-CC--eEEEEEcCCCcceEEeccccC
Q 011711 326 GKRLY-SGSMDN--TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL-DN--TIKVWIMTEEGNLEVAYTHNE 397 (479)
Q Consensus 326 ~~~l~-sgs~dg--~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~ 397 (479)
|+.++ +.+.+| .|+++|+.+++.. .+..+........|+ ++.|+..+. +| .|+++|+.+++...... ...
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~ 331 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGN 331 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCC
Confidence 67665 455555 6888899987654 344444444445554 666665554 33 57777877665332222 111
Q ss_pred ccceEEEeeeeCCCCCcEEEEEeCCC--eEEEeecCCCceeeeeeccCceEEEEECCCc-eE-EEEcCCCc--EEEEEec
Q 011711 398 DHGVLALGGLNDPDGNPVLICSCNDD--SVHLYELPSFMERGRIFSRREVRVIETGPDG-LF-FTGDGTGM--LSVWKIL 471 (479)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l-~sg~~dg~--v~vw~~~ 471 (479)
.. ....++|+|+.++++...++ .|.++|+.+++... +..........|+||| .+ ++...+|. |.++++.
T Consensus 332 ~~----~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 332 YN----ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred Cc----cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 11 12345799996655554444 58889998876432 2222233356899999 44 44444444 5555553
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.94 E-value=6.2e-06 Score=77.50 Aligned_cols=250 Identities=8% Similarity=0.041 Sum_probs=149.1
Q ss_pred CcEEEEECCCCceEEEEecCCcee-EEEeCCCEEEEEc-----------CCeEEEEEcCCCceEEecCC--------Ccc
Q 011711 214 GTVQLWDCHTGQSASVINLGAEVG-SLICEGPWVFVGM-----------PNVVKAWHIESSAEFSLDGP--------VGE 273 (479)
Q Consensus 214 g~v~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~-----------~~~i~v~~~~~~~~~~~~~~--------~~~ 273 (479)
++|.+.|..+++.+..+..+.... .++++++.++++. ++.|.+||..+.+....... ...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY 106 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence 899999999999999988654322 3567888776653 48999999999987632211 112
Q ss_pred EEEEEEcCC--EEEEEe-C-CCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCC-CcE
Q 011711 274 VYSMVVANE--MLFAGA-Q-DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDT-LEA 348 (479)
Q Consensus 274 v~~~~~~~~--~l~~g~-~-dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~-~~~ 348 (479)
-..++++++ .+++.. . +..|.+.|+.+++. +..+.- .+...-...+...+.+-+.||......+.+ ++.
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-----v~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-----VRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP 180 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-----EEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCce
Confidence 225556665 666554 3 78999999988753 333332 111111222222222334455544433322 221
Q ss_pred -EEE---EeCCCCCcE---EEEE-cCCEEEEEeCCCeEEEEEcCCCcc-----eEEeccc-------cCccceEEEeeee
Q 011711 349 -VMT---LNGHTDAPM---SLLC-WDQYLLSCSLDNTIKVWIMTEEGN-----LEVAYTH-------NEDHGVLALGGLN 408 (479)
Q Consensus 349 -~~~---~~~h~~~v~---~~~~-~~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~-------~~~~~~~~~~~~~ 408 (479)
..+ +......+. .+.. ++.+++...+ |+|.+.|+..... ...+... ......+++
T Consensus 181 ~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~---- 255 (352)
T TIGR02658 181 KIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY---- 255 (352)
T ss_pred EEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE----
Confidence 111 111011110 1223 4666666666 9999999654321 1111111 011112333
Q ss_pred CCCCCcEEEEE---------eCCCeEEEeecCCCceeeeeeccCceEEEEECCCc--eEE-EEcCCCcEEEEEeccCC
Q 011711 409 DPDGNPVLICS---------CNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG--LFF-TGDGTGMLSVWKILAKP 474 (479)
Q Consensus 409 ~~~~~~~l~s~---------~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g--~l~-sg~~dg~v~vw~~~~~~ 474 (479)
+++++.+++.. ...+.|.++|..+++.+..+.....+..++++||+ +|+ +...++.|.+.|..+.+
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 68888666633 12258999999999999999999999999999999 444 44468999999987764
No 272
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.91 E-value=2.3e-05 Score=75.12 Aligned_cols=266 Identities=17% Similarity=0.245 Sum_probs=154.7
Q ss_pred EEEEeCC----CcEEEEEC--CCCceE--EEEecCCcee--EEEeCCCEEEEEc-----CCeEEEEEcCCC--ceE---E
Q 011711 207 LYSGSRD----GTVQLWDC--HTGQSA--SVINLGAEVG--SLICEGPWVFVGM-----PNVVKAWHIESS--AEF---S 266 (479)
Q Consensus 207 l~s~s~D----g~v~vwd~--~~~~~~--~~~~~~~~~~--~~~~~~~~l~~~~-----~~~i~v~~~~~~--~~~---~ 266 (479)
++.|+.. +.|.+|++ ++++.. .......... .+.+++++|++.. .+.|..|.+... ... .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4455555 68888887 444432 2222333333 3445888888763 468999998875 221 1
Q ss_pred ecCCCccEEEEEEcCC--EEEEE-eCCCcEEEEEccCCCCCcccceeee----------cCCCCCeEEEEEc--CCEEEE
Q 011711 267 LDGPVGEVYSMVVANE--MLFAG-AQDGNILVWKGIPNTQNPFQLAALL----------KGHTRPVTCLAVG--GKRLYS 331 (479)
Q Consensus 267 ~~~~~~~v~~~~~~~~--~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~----------~~h~~~i~~l~~~--~~~l~s 331 (479)
.......-..++++++ +|+++ ..+|.|.++++...... ....... ........++.++ ++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l-~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSL-GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEE-EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccc-ceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 2223344556788766 55555 46999999999874221 1111111 1123456788886 777776
Q ss_pred Ee-CCCeEEEEECCCCc--E--EEEEeCC-CCCcEEEEEc--CCEEEEE-eCCCeEEEEEcCC-CcceEE---eccccC-
Q 011711 332 GS-MDNTIRVWDLDTLE--A--VMTLNGH-TDAPMSLLCW--DQYLLSC-SLDNTIKVWIMTE-EGNLEV---AYTHNE- 397 (479)
Q Consensus 332 gs-~dg~I~iwd~~~~~--~--~~~~~~h-~~~v~~~~~~--~~~l~s~-s~dg~i~iwd~~~-~~~~~~---~~~~~~- 397 (479)
.. ....|.+|+++... + ...+... ......+.++ +++++.. -.++.|.++++.. ...+.. ......
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 54 34589999997654 3 2333322 3345667776 5666554 4588999999882 222222 221111
Q ss_pred -ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC--Cc--eeeeeec-cCceEEEEECCCc-eE-EEEcCCCcEEEEE
Q 011711 398 -DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS--FM--ERGRIFS-RREVRVIETGPDG-LF-FTGDGTGMLSVWK 469 (479)
Q Consensus 398 -~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~--~~~~~~~-~~~v~~l~~s~~g-~l-~sg~~dg~v~vw~ 469 (479)
........+..+|+|+.+.++...++.|.+|+++. +. .+..+.. ....+.++++|+| +| ++.-.++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 11112223334699997777777889999999943 22 2333333 4458999999999 44 4556788999999
Q ss_pred eccC
Q 011711 470 ILAK 473 (479)
Q Consensus 470 ~~~~ 473 (479)
++..
T Consensus 321 ~d~~ 324 (345)
T PF10282_consen 321 IDPD 324 (345)
T ss_dssp EETT
T ss_pred EeCC
Confidence 8643
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=1e-06 Score=86.02 Aligned_cols=347 Identities=10% Similarity=0.092 Sum_probs=210.4
Q ss_pred CCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCC--eeEeCCC
Q 011711 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG--NCVKGDE 169 (479)
Q Consensus 92 ~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~--~~~~g~~ 169 (479)
....+.|+.+.-|+|+||.||-++|-.+.+......... +. ....-.-..++++|........|+.. .+-+.+.
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-la---a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-LA---AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-cc---cccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 447889999999999999999999987766433111111 00 00111223567788888888888765 7889999
Q ss_pred CCeEEEeecCCCceeeEE--EecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-CceeEE--EeCCC
Q 011711 170 CRFWHSWFCGEGFTMLAK--LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG-AEVGSL--ICEGP 244 (479)
Q Consensus 170 d~~i~vw~~~~~~~~~~~--~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~-~~~~~~--~~~~~ 244 (479)
+|.|.||-+-.+ .-... -.-.++.|.+++|+.||..+...-.||.|.|=.++.++. .--.+. .....+ +.+.+
T Consensus 92 ~GlIiVWmlykg-sW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 92 SGLIIVWMLYKG-SWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELKGQLLAHVLWSEDLE 169 (1189)
T ss_pred CceEEEEeeecc-cHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcchheccceeecccHH
Confidence 999999998766 11111 122467799999999999999999999988766654321 111111 111111 12333
Q ss_pred -EEEEEcCCeEEEEEcCCCceEE------------ecCCCccEEEEEEc--------CC--EEEEEeCCCcEEEEEccCC
Q 011711 245 -WVFVGMPNVVKAWHIESSAEFS------------LDGPVGEVYSMVVA--------NE--MLFAGAQDGNILVWKGIPN 301 (479)
Q Consensus 245 -~l~~~~~~~i~v~~~~~~~~~~------------~~~~~~~v~~~~~~--------~~--~l~~g~~dg~i~iwd~~~~ 301 (479)
.++.-.++.+.++|.+.+-... +......+..+.|. |+ .|+++..+|.+.+..-...
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 3334467888888877654321 11112235555553 34 8999999999988764443
Q ss_pred CCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC---------eEEEEECCCCcEEEEEeCCCCCcEEEEEcCC-EE
Q 011711 302 TQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN---------TIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQ-YL 369 (479)
Q Consensus 302 ~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg---------~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l 369 (479)
.. +...- ..-.|....|+ |..|++++.|. .|.+|. .-|+.+.+++.....|++++|.|. +=
T Consensus 250 ~~----Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 250 PE----PVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLR 322 (1189)
T ss_pred CC----CeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceE
Confidence 22 22211 22457778886 78888877542 445444 346778888888888999999853 43
Q ss_pred EEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEE
Q 011711 370 LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIE 449 (479)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~ 449 (479)
+.-..|+.|.+=+++..-....+ .. + +.+ .+..... ..-.|.+||..+.+..... -....+++
T Consensus 323 iA~AvdsfiyfanIRP~ykWgy~---e~--T-vVy--~y~~~e~-------p~y~i~Fwdtk~nek~vK~--V~~~~~~a 385 (1189)
T KOG2041|consen 323 IAIAVDSFIYFANIRPEYKWGYI---EE--T-VVY--VYQKEEL-------PQYGIMFWDTKTNEKTVKT--VTHFENMA 385 (1189)
T ss_pred EEEEecceEEEEeecccceEEEe---ee--E-EEE--EEccCCC-------cceEEEEEecccChhhhhh--hcceeehh
Confidence 44556888988887643211100 00 0 011 0111111 1224788998876553322 23456777
Q ss_pred ECCCc-eEEEEcCCCcEEEE
Q 011711 450 TGPDG-LFFTGDGTGMLSVW 468 (479)
Q Consensus 450 ~s~~g-~l~sg~~dg~v~vw 468 (479)
+..+. .|+.-..||.|.-+
T Consensus 386 ~~~ehCvL~~~~d~~~i~e~ 405 (1189)
T KOG2041|consen 386 FYREHCVLINRQDDGVIPEY 405 (1189)
T ss_pred eecccEEEEeccccCCCcch
Confidence 77776 77777777766544
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=3.3e-07 Score=89.28 Aligned_cols=272 Identities=17% Similarity=0.167 Sum_probs=171.0
Q ss_pred CeEEEecc--CCeeEeCCCCCeEEEeecCCC--------------ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcE
Q 011711 153 KNVCYHWL--SGNCVKGDECRFWHSWFCGEG--------------FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTV 216 (479)
Q Consensus 153 ~~~c~~~~--~~~~~~g~~d~~i~vw~~~~~--------------~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v 216 (479)
.--|..|+ .+.++.|+.||.++|-.+++. ...-+++.||.+.|.-+.|+.+.+.|-|+..+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 45577776 458999999999999998743 12345688999999999999999999999999999
Q ss_pred EEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEE
Q 011711 217 QLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNIL 294 (479)
Q Consensus 217 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~ 294 (479)
.||-+-.|.-.... .-....+.|.+++|+.+ .+.....||.|.
T Consensus 96 iVWmlykgsW~EEM-----------------------------------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 96 IVWMLYKGSWCEEM-----------------------------------INNRNKSVVVSMSWNLDGTKICIVYEDGAVI 140 (1189)
T ss_pred EEEeeecccHHHHH-----------------------------------hhCcCccEEEEEEEcCCCcEEEEEEccCCEE
Confidence 99998777533221 11224455677777655 777777777777
Q ss_pred EEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCC-------cEEEEE----eCCCCCcEE
Q 011711 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL-------EAVMTL----NGHTDAPMS 361 (479)
Q Consensus 295 iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~-------~~~~~~----~~h~~~v~~ 361 (479)
+=.+..+..-..++ ++. ....+.|+ ...++.+-.+|.+.++|.+.. .+.-.. ......+..
T Consensus 141 VGsvdGNRIwgKeL----kg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~ 214 (1189)
T KOG2041|consen 141 VGSVDGNRIWGKEL----KGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE 214 (1189)
T ss_pred EEeeccceecchhc----chh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence 66655543211111 111 12245565 445666677899999997541 111111 111122444
Q ss_pred EEEc----------CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCC---------
Q 011711 362 LLCW----------DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND--------- 422 (479)
Q Consensus 362 ~~~~----------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--------- 422 (479)
+.+. -..|+.+-..|.+.+-.-.+......+.. ........|+++|. +|+.++.+
T Consensus 215 i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt-----gm~~vgakWnh~G~-vLAvcG~~~da~~~~d~ 288 (1189)
T KOG2041|consen 215 IEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT-----GMKIVGAKWNHNGA-VLAVCGNDSDADEPTDS 288 (1189)
T ss_pred eeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec-----ccEeecceecCCCc-EEEEccCcccccCcccc
Confidence 4444 25788898899888875544433333322 12344556789998 66665543
Q ss_pred CeEEEeecCCCceeeeeec-cCceEEEEECCCceEEEEcCCCcEEEEEecc
Q 011711 423 DSVHLYELPSFMERGRIFS-RREVRVIETGPDGLFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 423 g~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~ 472 (479)
+.|++|.. -|+....+.. ...|+.++|-..|+-++-..|+.|.+=++..
T Consensus 289 n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 289 NKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRP 338 (1189)
T ss_pred ceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecc
Confidence 35666643 4555666654 6779999998888333333566666655543
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.83 E-value=4.9e-08 Score=95.26 Aligned_cols=277 Identities=17% Similarity=0.190 Sum_probs=169.8
Q ss_pred CCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCC
Q 011711 91 KSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDEC 170 (479)
Q Consensus 91 ~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d 170 (479)
.++.++..+|-|+-+|.++.-|-. +-|+..|..+.--..++.--...+ .. ...++....-+..-..
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad-----~q--------ws~h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVAD-----VQ--------WSPHPAKPYWIVSTSN 90 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcc-----ee--------cccCCCCceeEEecCc
Confidence 345788889999999999866643 445555543211111110000000 01 1111111111111122
Q ss_pred CeEEEeecCCC--ceeeEEEecccccEEEEEeCCC-CCEEEEEeCCCcEEEEECCCCce-EEEEec---CCceeEEE-eC
Q 011711 171 RFWHSWFCGEG--FTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQS-ASVINL---GAEVGSLI-CE 242 (479)
Q Consensus 171 ~~i~vw~~~~~--~~~~~~~~~H~~~V~~l~~s~~-~~~l~s~s~Dg~v~vwd~~~~~~-~~~~~~---~~~~~~~~-~~ 242 (479)
..-.+|++... ...-..+.||..+|+++.|+|. ...|++++.|-.|..||+.+-.. +..... ........ .+
T Consensus 91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD 170 (1081)
T ss_pred chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence 34457777533 3455667899999999999875 45799999999999999987542 222221 12222222 26
Q ss_pred CCEEEEEcCCeEEEEEcCCCce--EEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC
Q 011711 243 GPWVFVGMPNVVKAWHIESSAE--FSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (479)
Q Consensus 243 ~~~l~~~~~~~i~v~~~~~~~~--~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~ 317 (479)
+..++.+..+.|.+||.+.+.. ..+++|...|+.+.|..- .+.+.+.||+|+.||........ .. ......
T Consensus 171 p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~---~~-~vtt~~ 246 (1081)
T KOG0309|consen 171 PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES---KR-TVTTNF 246 (1081)
T ss_pred cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc---ce-eccccC
Confidence 7788888999999999988764 567789999999988755 89999999999999987654321 11 111222
Q ss_pred CeEE-----------EEEc--CCEEEEEeCCCeEEEEECCC-CcEEEEEeCCCCCcEEEEEc------------CCEEEE
Q 011711 318 PVTC-----------LAVG--GKRLYSGSMDNTIRVWDLDT-LEAVMTLNGHTDAPMSLLCW------------DQYLLS 371 (479)
Q Consensus 318 ~i~~-----------l~~~--~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~v~~~~~~------------~~~l~s 371 (479)
+|.- +-+. ++.+.---.+.....|+..+ .+++++|.+|.+.|..+.|- +-.|++
T Consensus 247 piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVT 326 (1081)
T KOG0309|consen 247 PIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVT 326 (1081)
T ss_pred cceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEE
Confidence 2222 2221 22111122233334444433 46899999999998877764 126999
Q ss_pred EeCCCeEEEEEcCC
Q 011711 372 CSLDNTIKVWIMTE 385 (479)
Q Consensus 372 ~s~dg~i~iwd~~~ 385 (479)
-+.|..+++|-+.+
T Consensus 327 WSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 327 WSKDQTLRLWPIDS 340 (1081)
T ss_pred eecCCceEeeeccH
Confidence 99999999997754
No 276
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.83 E-value=8.9e-06 Score=81.61 Aligned_cols=283 Identities=13% Similarity=0.146 Sum_probs=166.5
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccc------cEE--EEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKK------AVS--GIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~------~V~--~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 232 (479)
.+.+..++.++.+.-.|..++ +.+..++.... .+. .++.. ++..++.++.|+.|.-+|.++|+.+..+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG-KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC-hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 445666777899999999888 55555543322 110 11111 226788888999999999999999988876
Q ss_pred CCce------e-EEEeCCCEEEEE----------cCCeEEEEEcCCCceEEec-CC-C-------------------ccE
Q 011711 233 GAEV------G-SLICEGPWVFVG----------MPNVVKAWHIESSAEFSLD-GP-V-------------------GEV 274 (479)
Q Consensus 233 ~~~~------~-~~~~~~~~l~~~----------~~~~i~v~~~~~~~~~~~~-~~-~-------------------~~v 274 (479)
.... . .....+..++++ .++.+..+|.++++..-.. .. . ..+
T Consensus 139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 218 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS 218 (488)
T ss_pred CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence 6541 1 111223444443 2578899999988865221 10 0 011
Q ss_pred E-EEEEc--CCEEEEEeCCC------------------cEEEEEccCCCCCcccceee------ecCCCCCe-EEEE-Ec
Q 011711 275 Y-SMVVA--NEMLFAGAQDG------------------NILVWKGIPNTQNPFQLAAL------LKGHTRPV-TCLA-VG 325 (479)
Q Consensus 275 ~-~~~~~--~~~l~~g~~dg------------------~i~iwd~~~~~~~~~~~~~~------~~~h~~~i-~~l~-~~ 325 (479)
. ..+++ .+.+++++.++ .|..+|..+++.. ++.... +.....++ ..+. .+
T Consensus 219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~-W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK-WFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE-EEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 22333 34788887665 6888998887642 111000 01111111 1121 33
Q ss_pred CC---EEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEE------------------eCCCeEEEEEcC
Q 011711 326 GK---RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSC------------------SLDNTIKVWIMT 384 (479)
Q Consensus 326 ~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~------------------s~dg~i~iwd~~ 384 (479)
+. .++.++.+|.+...|.++++.+.+...... .+...++.++.+ ..+|.+.-.|+.
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~---~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ---PMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc---ccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 33 688889999999999999999887653211 111222333332 246788888988
Q ss_pred CCcceEEeccccC--------ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEE--EEECCCc
Q 011711 385 EEGNLEVAYTHNE--------DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRV--IETGPDG 454 (479)
Q Consensus 385 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~--l~~s~~g 454 (479)
+++.+........ ........ ..+. +++.++.||.|+.+|..+++.+.+......+.. +.+..+|
T Consensus 375 tG~~~W~~~~~~~~~~~~~g~~~~~~~~~----~~g~-~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g 449 (488)
T cd00216 375 TGKVVWEKREGTIRDSWNIGFPHWGGSLA----TAGN-LVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNG 449 (488)
T ss_pred CCcEeeEeeCCccccccccCCcccCcceE----ecCC-eEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCC
Confidence 8876655543310 00000110 2334 677788999999999999999988876544433 2234466
No 277
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.83 E-value=1.4e-08 Score=62.98 Aligned_cols=38 Identities=34% Similarity=0.664 Sum_probs=36.6
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWD 220 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd 220 (479)
++++.+++|.+.|++|+|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 67899999999999999999999999999999999997
No 278
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=4.7e-05 Score=69.22 Aligned_cols=280 Identities=14% Similarity=0.108 Sum_probs=164.9
Q ss_pred CCeEEEeecCCCce--eeEEEecccccEEEEEeCCCCCEEEEEeCC---CcEEEEECCC--CceEE--EEecC-Cc--ee
Q 011711 170 CRFWHSWFCGEGFT--MLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GTVQLWDCHT--GQSAS--VINLG-AE--VG 237 (479)
Q Consensus 170 d~~i~vw~~~~~~~--~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D---g~v~vwd~~~--~~~~~--~~~~~-~~--~~ 237 (479)
+.-|++|++.+... -...+-.+.+..+-|+|+|+++.|+++-.+ |.|..|.++. |+... ..... .+ -.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 57899999974312 222334577889999999999999998655 6787777764 44332 11222 22 23
Q ss_pred EEEeCCCEEEEE--cCCeEEEEEcCC-CceE---EecCCCcc----------EEEEEEcCC--EEEEEe-CCCcEEEEEc
Q 011711 238 SLICEGPWVFVG--MPNVVKAWHIES-SAEF---SLDGPVGE----------VYSMVVANE--MLFAGA-QDGNILVWKG 298 (479)
Q Consensus 238 ~~~~~~~~l~~~--~~~~i~v~~~~~-~~~~---~~~~~~~~----------v~~~~~~~~--~l~~g~-~dg~i~iwd~ 298 (479)
++..++++++++ ..+.|.++-++. +... ....|.+. +....+.|+ +|++.. .--.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 444588888876 678999998865 3322 22334333 777788887 444432 3347999999
Q ss_pred cCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEe-CCCeEEEEECCCC-cEEEEEeCC-------C--CCcEE--EE
Q 011711 299 IPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTL-EAVMTLNGH-------T--DAPMS--LL 363 (479)
Q Consensus 299 ~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs-~dg~I~iwd~~~~-~~~~~~~~h-------~--~~v~~--~~ 363 (479)
..+...+...... .....-..|.|+ +++.+... -+++|.+|..+.. ..+..++.+ . ....+ +.
T Consensus 175 ~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 175 DDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred ccCcccccccccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 9776543333222 234455778886 67765554 5899999998773 233333221 1 12233 33
Q ss_pred EcCCEEEEEeC-CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC--Cceeeee-
Q 011711 364 CWDQYLLSCSL-DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS--FMERGRI- 439 (479)
Q Consensus 364 ~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~- 439 (479)
.+|++|.++.. ...|-+|.+........+...........-.+.+++.|+.++++.-.+..|.+|..+. |++-...
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 34788877654 4578888887654433333222221221222334688986666666667799987754 3322111
Q ss_pred -eccCceEEEEEC
Q 011711 440 -FSRREVRVIETG 451 (479)
Q Consensus 440 -~~~~~v~~l~~s 451 (479)
.......|+.|.
T Consensus 333 ~~~~p~Pvcv~f~ 345 (346)
T COG2706 333 YAVVPEPVCVKFL 345 (346)
T ss_pred ccCCCCcEEEEEc
Confidence 123445566553
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.80 E-value=7.6e-08 Score=82.72 Aligned_cols=206 Identities=15% Similarity=0.231 Sum_probs=131.4
Q ss_pred EEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCce----EEEEecCCceeEEEeCCCEEEE
Q 011711 173 WHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS----ASVINLGAEVGSLICEGPWVFV 248 (479)
Q Consensus 173 i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~l~~ 248 (479)
+..|+-..+....+.+.-|+++=.+-+.+--++.++++..||.+.+.+.+.-.. +..........+....++++.+
T Consensus 70 ~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s 149 (319)
T KOG4714|consen 70 ISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILS 149 (319)
T ss_pred echhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEec
Confidence 334444444455666666655444444444577899999999999999775211 1111122223333445566655
Q ss_pred Ec------CCeEEEEEcCCCceEE-ecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCC
Q 011711 249 GM------PNVVKAWHIESSAEFS-LDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 249 ~~------~~~i~v~~~~~~~~~~-~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
+. -+..+.|+++..+.+. .......|.+++-+|. .+++|+.||.+-+||.+.... +...+..|+.+
T Consensus 150 ~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~----p~S~l~ahk~~ 225 (319)
T KOG4714|consen 150 GGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM----PVSLLKAHKAE 225 (319)
T ss_pred CCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc----hHHHHHHhhhh
Confidence 43 3455666666544332 1222334888888776 889999999999999988743 56778899999
Q ss_pred eEEEEEc---CCEEEEEeCCCeEEEEECCCC-----------------cEEEE---E----eCCCCCcEEEEEcCCEEEE
Q 011711 319 VTCLAVG---GKRLYSGSMDNTIRVWDLDTL-----------------EAVMT---L----NGHTDAPMSLLCWDQYLLS 371 (479)
Q Consensus 319 i~~l~~~---~~~l~sgs~dg~I~iwd~~~~-----------------~~~~~---~----~~h~~~v~~~~~~~~~l~s 371 (479)
|..+.|+ +..|+++++||.+-.||..+. .+++. + ..-.-.|.++...|..|++
T Consensus 226 i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVc 305 (319)
T KOG4714|consen 226 IWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVC 305 (319)
T ss_pred hhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEe
Confidence 9999996 788999999999999997741 11111 0 0111224444455778888
Q ss_pred EeCCCeEEEEE
Q 011711 372 CSLDNTIKVWI 382 (479)
Q Consensus 372 ~s~dg~i~iwd 382 (479)
|+.-+.|++++
T Consensus 306 gtd~eaIyl~~ 316 (319)
T KOG4714|consen 306 GTDAEAIYLTR 316 (319)
T ss_pred ccccceEEEec
Confidence 88877777764
No 280
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4e-07 Score=83.05 Aligned_cols=255 Identities=15% Similarity=0.106 Sum_probs=147.5
Q ss_pred EEEeecCCCceeeEEEecccccEEEEEeCCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcC
Q 011711 173 WHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMP 251 (479)
Q Consensus 173 i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~-~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (479)
++..+..+- +....+.+|...|.+++|+|..+ ++..++.+..|+|.|+++...+..+..
T Consensus 175 v~~l~~~~f-kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a------------------- 234 (463)
T KOG1645|consen 175 VQKLESHDF-KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA------------------- 234 (463)
T ss_pred eEEeccCCc-chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-------------------
Confidence 444443332 44557788999999999999887 788999999999999998877766542
Q ss_pred CeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEE----
Q 011711 252 NVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV---- 324 (479)
Q Consensus 252 ~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~---- 324 (479)
...+++++|+-+ .|.+|..+|.|.+||++.......+... .-...+|..++.
T Consensus 235 -------------------~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a--~~t~~pv~~i~~~~~n 293 (463)
T KOG1645|consen 235 -------------------YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVA--NVTINPVHKIAPVQPN 293 (463)
T ss_pred -------------------cCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhh--hhccCcceeecccCcc
Confidence 256777777654 8999999999999999886542111111 122345555544
Q ss_pred ---c-CCEEEEEeCCCeEEEEECCC----CcEEEEEeCCCCCcEEEEEcC--C-EEEEEeCCC------eEEE-EEcCCC
Q 011711 325 ---G-GKRLYSGSMDNTIRVWDLDT----LEAVMTLNGHTDAPMSLLCWD--Q-YLLSCSLDN------TIKV-WIMTEE 386 (479)
Q Consensus 325 ---~-~~~l~sgs~dg~I~iwd~~~----~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg------~i~i-wd~~~~ 386 (479)
. +.+++..+.+ +..|++.- ..++..+. ..+...++...+ + .|++.-.+- .|-. -|..++
T Consensus 294 ~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG 370 (463)
T KOG1645|consen 294 KIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG 370 (463)
T ss_pred ccccccceEEeeehh--hhhhhhhccccCCCcccccC-CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC
Confidence 2 4455444433 34454432 11222221 223344444442 3 333332210 0000 011111
Q ss_pred cceEEec-cc-cCccc-eEE-EeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCC-c--eEEEE
Q 011711 387 GNLEVAY-TH-NEDHG-VLA-LGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPD-G--LFFTG 459 (479)
Q Consensus 387 ~~~~~~~-~~-~~~~~-~~~-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~-g--~l~sg 459 (479)
..+.... .+ ..... ... -.....++.+.++..+...+.+.+||..+++...++....+|.+++...- + +|++-
T Consensus 371 ~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L 450 (463)
T KOG1645|consen 371 FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL 450 (463)
T ss_pred ceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhe
Confidence 1111100 00 00000 000 00111356666677777778999999999999999988889988887653 3 55544
Q ss_pred cCCCcEEEEEecc
Q 011711 460 DGTGMLSVWKILA 472 (479)
Q Consensus 460 ~~dg~v~vw~~~~ 472 (479)
.|..++||+.+.
T Consensus 451 -Td~~v~Iyk~es 462 (463)
T KOG1645|consen 451 -TDDRVHIYKNES 462 (463)
T ss_pred -ecceEEEEecCC
Confidence 466799998754
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.79 E-value=8.5e-07 Score=76.76 Aligned_cols=186 Identities=13% Similarity=0.045 Sum_probs=123.5
Q ss_pred EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEE---EEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCc
Q 011711 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC---LAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAP 359 (479)
Q Consensus 283 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~---l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v 359 (479)
.|+.|+..|...+|...+++. .......|...|+- .+-..-.+..++.|.++++.++.-+..-..+....-.+
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ 161 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDG----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQ 161 (344)
T ss_pred EEEeccccceeeeecccCccc----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccce
Confidence 899999999999999887653 23333444444332 22234557778888899888876544332222111225
Q ss_pred EEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEe-ccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCcee
Q 011711 360 MSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVA-YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMER 436 (479)
Q Consensus 360 ~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 436 (479)
.++.++ ++++++.+....|..|.+......... +.... .--.++..++.... .+|++..||++.|||++.....
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t--~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT--SDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc--CCCceeeeeccCcc-eEEEEecCCcEEEEEecccccc
Confidence 555555 789999999999999998765433222 22111 12234444555555 8999999999999999875443
Q ss_pred eee------eccCceEEEEECCCc---eEEEEcCCCcEEEEEeccCCC
Q 011711 437 GRI------FSRREVRVIETGPDG---LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 437 ~~~------~~~~~v~~l~~s~~g---~l~sg~~dg~v~vw~~~~~~~ 475 (479)
... .|.+.++.+.|++.| +|+..-.-+.+.+-|+.+...
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 322 258899999999877 666666677888888877654
No 282
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=1.1e-07 Score=92.78 Aligned_cols=273 Identities=16% Similarity=0.177 Sum_probs=172.7
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCc--eeEEE----e-CCCEEEEEcCCeEEEEEcCCCc
Q 011711 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT-GQSASVINLGAE--VGSLI----C-EGPWVFVGMPNVVKAWHIESSA 263 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~-~~~~~~~~~~~~--~~~~~----~-~~~~l~~~~~~~i~v~~~~~~~ 263 (479)
.+++.++..+|.|+-+|.++.-|. .+-|+.. +...+-+.+-.+ +.... + ...+++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 467888899999999999998774 4455543 333333322211 11111 2 3345555567777788876443
Q ss_pred ----eEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeC
Q 011711 264 ----EFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM 334 (479)
Q Consensus 264 ----~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~ 334 (479)
++.+.+|...|+.+.|.+. .+++++.|-.+..||+++... +......-...-..++|+ ...+.+.+.
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~----p~ys~~~w~s~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR----PFYSTSSWRSAASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc----ceeeeecccccCceeeecccCcchhhhcc
Confidence 3567799999999999865 999999999999999988643 344444444556678887 445555667
Q ss_pred CCeEEEEECCCC-cEEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceE-EeccccCccceEEEeeeeC
Q 011711 335 DNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLE-VAYTHNEDHGVLALGGLND 409 (479)
Q Consensus 335 dg~I~iwd~~~~-~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 409 (479)
...|++||++.+ .++..+++|...+..+.+. ...+.+++.|++|+.||.+...... .....+.++ +...+-
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi----w~~r~~ 254 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI----WRGRYL 254 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcc----eecccc
Confidence 788999999875 5788899998888888887 4678999999999999987653221 111112211 111112
Q ss_pred CCCCcEEEEE-eCCCeEEEeecCCC----------ceeeeeec-cCceEEEEEC--------CCc---eEEEEcCCCcEE
Q 011711 410 PDGNPVLICS-CNDDSVHLYELPSF----------MERGRIFS-RREVRVIETG--------PDG---LFFTGDGTGMLS 466 (479)
Q Consensus 410 ~~~~~~l~s~-~~dg~v~iwd~~~~----------~~~~~~~~-~~~v~~l~~s--------~~g---~l~sg~~dg~v~ 466 (479)
|-|+-+++-- -.+..|.+++.++. +.+..+.+ .+.|....|- .|. .|+|-+.|..++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 3333222211 11224455444332 23344432 3344443332 122 899999999999
Q ss_pred EEEeccC
Q 011711 467 VWKILAK 473 (479)
Q Consensus 467 vw~~~~~ 473 (479)
+|.+.+.
T Consensus 335 lWpI~~~ 341 (1081)
T KOG0309|consen 335 LWPIDSQ 341 (1081)
T ss_pred eeeccHH
Confidence 9998764
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.79 E-value=2.9e-05 Score=72.73 Aligned_cols=178 Identities=12% Similarity=0.146 Sum_probs=126.7
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCce------e-E---------E-EeCCCEEEEEcCCeEEEEEcCCCc
Q 011711 201 PLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV------G-S---------L-ICEGPWVFVGMPNVVKAWHIESSA 263 (479)
Q Consensus 201 s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~------~-~---------~-~~~~~~l~~~~~~~i~v~~~~~~~ 263 (479)
+.||+.++-. .-|.|.++|..+.+... +..+-+. . . + ..+|.+++.-+.|...+.+...+.
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe
Confidence 3467666543 34789999988765432 2221110 0 0 1 127888888888988888887777
Q ss_pred eEEecCCCccEEEEEEc--CCEEEEEeCCC-cEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeE
Q 011711 264 EFSLDGPVGEVYSMVVA--NEMLFAGAQDG-NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTI 338 (479)
Q Consensus 264 ~~~~~~~~~~v~~~~~~--~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I 338 (479)
.+... +.+.|.-..+. ++-++.|..|| .+-++|..++. ...+...-+.|.++..+ |++++++.....|
T Consensus 353 ~iqv~-~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e------~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el 425 (668)
T COG4946 353 SIQVG-KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE------VKRIEKDLGNIEAVKVSPDGKKVVVANDRFEL 425 (668)
T ss_pred eEEcC-CCCceEEEEEccCCcceEEeccCCceEEEEecCCce------EEEeeCCccceEEEEEcCCCcEEEEEcCceEE
Confidence 66554 44446655554 44899999999 89999998874 45566677889998886 7889999999999
Q ss_pred EEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCC----eEEEEEcCCCc
Q 011711 339 RVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN----TIKVWIMTEEG 387 (479)
Q Consensus 339 ~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg----~i~iwd~~~~~ 387 (479)
-+.|++++.....-+...+-|+.+.++ +++++-+--+| .|+++|+..++
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 999999998765555566778888888 56777665554 68899887654
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.74 E-value=2.4e-07 Score=84.52 Aligned_cols=155 Identities=15% Similarity=0.184 Sum_probs=110.8
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEECCCCc----eEEEEecCCceeEEE---eCCCEEEEEcC---CeEEEEEcCCCce
Q 011711 195 VSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----SASVINLGAEVGSLI---CEGPWVFVGMP---NVVKAWHIESSAE 264 (479)
Q Consensus 195 V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~----~~~~~~~~~~~~~~~---~~~~~l~~~~~---~~i~v~~~~~~~~ 264 (479)
+..+..++++++||.+..+....+++..... ............++. .+...+++-.. ..+.+|....+..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 3344557778888888877776676665433 333333333333332 24444444433 4555666665667
Q ss_pred EEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEE
Q 011711 265 FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVW 341 (479)
Q Consensus 265 ~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iw 341 (479)
...-+|...++.+++++| .|+++..|..|++-..... +.+....-||+..|..++.- +..|++|+.|++|++|
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~----f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT----FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLW 220 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc----cchhhhccccHhheeeeeeccCceeeecCCCCcEEEE
Confidence 777899999999999988 9999999999999876554 22344567899999999996 6678999999999999
Q ss_pred ECCCCcEEEEEe
Q 011711 342 DLDTLEAVMTLN 353 (479)
Q Consensus 342 d~~~~~~~~~~~ 353 (479)
|+.+++++.++.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999987664
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.73 E-value=3.5e-06 Score=73.08 Aligned_cols=193 Identities=10% Similarity=0.036 Sum_probs=133.2
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecC---Cce
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLG---AEV 236 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~---~~~ 236 (479)
...++.|+..|...+|...+....+.....|...|+-+.=.. ....+..++.|.++++.+++-+........+ ...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 457889999999999999877566666666766554332211 2334778889999999988765443333322 333
Q ss_pred eEEEeCCCEEEE-EcCCeEEEEEcCCCceEE----ecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccce
Q 011711 237 GSLICEGPWVFV-GMPNVVKAWHIESSAEFS----LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLA 309 (479)
Q Consensus 237 ~~~~~~~~~l~~-~~~~~i~v~~~~~~~~~~----~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~ 309 (479)
.++..++.++++ |....|..|.+....+.. .......-.+..|+.. .+|++..||++.|||++.......+..
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 445568888876 456789999887765532 2223333445566654 999999999999999987654434444
Q ss_pred eeecCCCCCeEEEEEc----CCEEEEEeCCCeEEEEECCCCcEEEEEe
Q 011711 310 ALLKGHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (479)
Q Consensus 310 ~~~~~h~~~i~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 353 (479)
..-..|.+.+..+.|+ -++|+..-.-+.+.+.|+++++..+.+.
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 5556689999999997 2455555566889999999987766554
No 286
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=8.4e-06 Score=80.22 Aligned_cols=213 Identities=13% Similarity=0.051 Sum_probs=117.5
Q ss_pred eEEEEEcCCCceEEecCCCccEEEEEEcCC--E---EEEEeCCC--cEEEEEccCCCCCcccceeeecCCCCCeEEEEEc
Q 011711 253 VVKAWHIESSAEFSLDGPVGEVYSMVVANE--M---LFAGAQDG--NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG 325 (479)
Q Consensus 253 ~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~---l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~ 325 (479)
.|.+.|........+......+.+-.|+|+ . +++...+| .|++.++..+.. +.+..+ .+......|+
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~---~~lt~~---~g~~~~p~wS 239 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG---KKILAL---QGNQLMPTFS 239 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc---eEeecC---CCCccceEEC
Confidence 455566665555545444555667788888 3 23444444 477778776643 122222 3333445665
Q ss_pred --CCEEEEEeC-----CCeEEEEECCCC---cEEEEEeCCCCCcEEEEEc--CCEEEEEe-CCCeEEEE--EcCC-Ccce
Q 011711 326 --GKRLYSGSM-----DNTIRVWDLDTL---EAVMTLNGHTDAPMSLLCW--DQYLLSCS-LDNTIKVW--IMTE-EGNL 389 (479)
Q Consensus 326 --~~~l~sgs~-----dg~I~iwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~s-~dg~i~iw--d~~~-~~~~ 389 (479)
|+.|+..+. |-.+..|++..+ +.......+........++ |+.|+..+ .+|...+| ++.. +...
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 777765442 223445777653 3333332222223344444 77777655 46655555 4432 2223
Q ss_pred EEeccccCccceEEEeeeeCCCCCcEEEEEeCC--CeEEEeecCCCceeeeeeccCceEEEEECCCc-eEE-EEcC--CC
Q 011711 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCND--DSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFF-TGDG--TG 463 (479)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~-sg~~--dg 463 (479)
..+........ ...|+|||+.+++++..+ ..|.+||+.+++..........+....|+||| .|+ +... ..
T Consensus 320 ~~lt~~~~~~~----~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 320 RLLTKKYRNSS----CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNES 395 (428)
T ss_pred EEeccCCCCcc----ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCc
Confidence 33333222222 344579999666555443 46999999888765433334467889999999 444 4443 35
Q ss_pred cEEEEEeccCCC
Q 011711 464 MLSVWKILAKPN 475 (479)
Q Consensus 464 ~v~vw~~~~~~~ 475 (479)
.|.+|++..++.
T Consensus 396 ~L~~vdl~~g~~ 407 (428)
T PRK01029 396 ELYLISLITKKT 407 (428)
T ss_pred eEEEEECCCCCE
Confidence 677788766543
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.71 E-value=3.5e-05 Score=82.32 Aligned_cols=292 Identities=9% Similarity=0.049 Sum_probs=169.2
Q ss_pred CeeEeCCCCCeEEEe----ecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECC---------------
Q 011711 162 GNCVKGDECRFWHSW----FCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH--------------- 222 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw----~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~--------------- 222 (479)
..++.+..+|.|.+. +..+. .+...-.-...|.+++||||+..|+..+.+++|.+.+-.
T Consensus 88 ~~l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~ 165 (928)
T PF04762_consen 88 ESLCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFG 165 (928)
T ss_pred CcEEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccC
Confidence 355566666777777 44333 222222336789999999999999999999998876421
Q ss_pred C--------CceEEEEe-------------------------cCCceeEEE--eCCCEEEEEc-------CCeEEEEEcC
Q 011711 223 T--------GQSASVIN-------------------------LGAEVGSLI--CEGPWVFVGM-------PNVVKAWHIE 260 (479)
Q Consensus 223 ~--------~~~~~~~~-------------------------~~~~~~~~~--~~~~~l~~~~-------~~~i~v~~~~ 260 (479)
. |+....|. .......++ .||.+++++. ...+++|+-+
T Consensus 166 ~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re 245 (928)
T PF04762_consen 166 ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE 245 (928)
T ss_pred CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC
Confidence 0 11111110 000111222 3888888752 2579999988
Q ss_pred CCceEEecCCCccEEEEEEcCC--EEEEEeC---CCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEe
Q 011711 261 SSAEFSLDGPVGEVYSMVVANE--MLFAGAQ---DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGS 333 (479)
Q Consensus 261 ~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs 333 (479)
..-.-..+...+--.+++|.|. +||+... ...|.+|.-+.-.. .+....+......|..|.|+ +..|+...
T Consensus 246 G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh--geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 246 GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH--GEFTLRFDPEEEKVIELAWNSDSEILAVWL 323 (928)
T ss_pred ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe--eeEecCCCCCCceeeEEEECCCCCEEEEEe
Confidence 4322233333444456788776 5665543 34577776443322 12222223456688999997 77888876
Q ss_pred CCCeEEEEECCCCcEE--EEEeCC-CCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeee
Q 011711 334 MDNTIRVWDLDTLEAV--MTLNGH-TDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGL 407 (479)
Q Consensus 334 ~dg~I~iwd~~~~~~~--~~~~~h-~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (479)
.|. |.+|-..+..-. +.+.-. ...+..+.|+ ...|...+.+|.+..+++.-. . ..+..
T Consensus 324 ~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~-----v----------~~s~~ 387 (928)
T PF04762_consen 324 EDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD-----V----------SRSPG 387 (928)
T ss_pred cCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE-----E----------EecCC
Confidence 555 999998886532 233322 2234447777 356667776677776655311 0 00000
Q ss_pred eCCCCCcEEEEEeCCCeEEEeecCCCce-----eeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 408 NDPDGNPVLICSCNDDSVHLYELPSFME-----RGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 408 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
..|++...+++. +...+.+-.++.... ...+.-..+|.+++|++++ .+++-..||.|.+|.+....
T Consensus 388 ~~~~D~g~vaVI-DG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 388 SSPNDNGTVAVI-DGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CCccCceEEEEE-eCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 012222122222 233455555544322 2333447889999999999 89999999999999976543
No 288
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=2.6e-05 Score=76.82 Aligned_cols=236 Identities=14% Similarity=0.051 Sum_probs=127.2
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEE---EEEeCCC--cEEEEECCCCceEEEEecCCceeEEEeCCCE
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKL---YSGSRDG--TVQLWDCHTGQSASVINLGAEVGSLICEGPW 245 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l---~s~s~Dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
..|.+.|.+.+ ..+.+......+.+=+|+|||+.+ ++...+| .|.+.++.+++......
T Consensus 165 ~~l~~~d~dG~--~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-------------- 228 (428)
T PRK01029 165 GELWSVDYDGQ--NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-------------- 228 (428)
T ss_pred ceEEEEcCCCC--CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec--------------
Confidence 45666666543 233444455667788999999752 2444443 46666776665433222
Q ss_pred EEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEe-CCC----cEEEEEccCCCCCcccceeeecCCCCC
Q 011711 246 VFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA-QDG----NILVWKGIPNTQNPFQLAALLKGHTRP 318 (479)
Q Consensus 246 l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~-~dg----~i~iwd~~~~~~~~~~~~~~~~~h~~~ 318 (479)
..+......|+|| .|+..+ .+| .+..|++..+.. .+.......+...
T Consensus 229 ------------------------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~--g~~~~lt~~~~~~ 282 (428)
T PRK01029 229 ------------------------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI--GKPRRLLNEAFGT 282 (428)
T ss_pred ------------------------CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC--CcceEeecCCCCC
Confidence 1222334566666 443332 222 233466554311 0112222222233
Q ss_pred eEEEEEc--CCEEEEEe-CCCeEEEE--ECCC-CcEEEEEeCCCCCcEEEEEc--CCEEEEEeCC---CeEEEEEcCCCc
Q 011711 319 VTCLAVG--GKRLYSGS-MDNTIRVW--DLDT-LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD---NTIKVWIMTEEG 387 (479)
Q Consensus 319 i~~l~~~--~~~l~sgs-~dg~I~iw--d~~~-~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d---g~i~iwd~~~~~ 387 (479)
.....|+ |+.|+..+ .+|...+| ++.. +.....+..+...+....++ |+.|+..+.+ ..|.+||+.+++
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 3456675 77666554 46654454 5542 23344454444444555555 7877766543 479999998776
Q ss_pred ceEEeccccCccceEEEeeeeCCCCCcEEEEEeC--CCeEEEeecCCCceeeeeeccCceEEEEECCC
Q 011711 388 NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN--DDSVHLYELPSFMERGRIFSRREVRVIETGPD 453 (479)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~ 453 (479)
... +........ ...|+|||+.+++++.. ...|.++|+.+++........+.+...+|+|-
T Consensus 363 ~~~-Lt~~~~~~~----~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 363 DYQ-LTTSPENKE----SPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred eEE-ccCCCCCcc----ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 533 322222222 24457999966655543 35688889887766544445566778888874
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=1.1e-07 Score=85.04 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=115.5
Q ss_pred EEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCC-----cEEEEEeCCCC
Q 011711 285 FAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL-----EAVMTLNGHTD 357 (479)
Q Consensus 285 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~-----~~~~~~~~h~~ 357 (479)
++.+.+..|.+-|+.++-. +.+. .++.|.++.|. +++++.|..+|.|..+|++.. .+.+.+- |.+
T Consensus 228 fs~G~sqqv~L~nvetg~~------qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~S 299 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ------QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDS 299 (425)
T ss_pred ecccccceeEEEEeecccc------cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCc
Confidence 5666777888999888742 2233 56778888885 899999999999999999874 3344443 777
Q ss_pred CcEEEEE---cCCEEEEEeCCCeEEEEEcCCCcc---eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC
Q 011711 358 APMSLLC---WDQYLLSCSLDNTIKVWIMTEEGN---LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 358 ~v~~~~~---~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 431 (479)
.|+++.. ++++|++.+.+|+|++||.+-.++ +....+|-.....+.+.. +++.. +++++++|...+||.++
T Consensus 300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v--~~eeg-~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV--KEEEG-SIFSVGDDCYTRIWSLD 376 (425)
T ss_pred chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccc--ccccc-eEEEccCeeEEEEEecc
Confidence 7777654 478999999999999999988777 666666655443333322 34444 78889999999999999
Q ss_pred CCceeeeeecc-----CceEEEEECC
Q 011711 432 SFMERGRIFSR-----REVRVIETGP 452 (479)
Q Consensus 432 ~~~~~~~~~~~-----~~v~~l~~s~ 452 (479)
.+..+.++.-. ..+.++++..
T Consensus 377 ~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 377 SGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred cCceeeccCCCCccccccccceehhc
Confidence 99999888752 3455566653
No 290
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=2.3e-05 Score=77.72 Aligned_cols=206 Identities=17% Similarity=0.120 Sum_probs=116.0
Q ss_pred eEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEe-CCC--cEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--
Q 011711 253 VVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA-QDG--NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-- 325 (479)
Q Consensus 253 ~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~-~dg--~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-- 325 (479)
.+.++|........+......+.+..|+|+ .|+..+ .++ .|++||+.++.. +.+.... .......|+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---~~lt~~~---g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---EKVTSFP---GINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe---EEecCCC---CCcCCeeECCC
Confidence 556667666555555556667888899988 555443 333 588888877642 1122222 223356675
Q ss_pred CCEEE-EEeCCCe--EEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeC-CC--eEEEEEcCCCcceEEeccccC
Q 011711 326 GKRLY-SGSMDNT--IRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL-DN--TIKVWIMTEEGNLEVAYTHNE 397 (479)
Q Consensus 326 ~~~l~-sgs~dg~--I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~ 397 (479)
++.|+ +.+.+|. |+++|+.+++. ..+..+........|+ ++.|+..+. ++ .|.++|+.+++... +.....
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~ 350 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGE 350 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCC
Confidence 77665 4566664 88889988765 3444444444455554 677665553 34 46666776655332 221111
Q ss_pred ccceEEEeeeeCCCCCcEEEEEeCCC--eEEEeecCCCceeeeeeccCceEEEEECCCc-eE-EEEcCCCc--EEEEEec
Q 011711 398 DHGVLALGGLNDPDGNPVLICSCNDD--SVHLYELPSFMERGRIFSRREVRVIETGPDG-LF-FTGDGTGM--LSVWKIL 471 (479)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l-~sg~~dg~--v~vw~~~ 471 (479)
.. ....++|+|+.+++++..++ .|.++|+.+++... +..........|+||| .| ++...+|. +.+++..
T Consensus 351 ~~----~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 351 QN----LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CC----cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 11 12345799996666655555 45557777765432 2222222345899999 44 44445554 5555653
No 291
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.63 E-value=5.9e-05 Score=82.16 Aligned_cols=225 Identities=10% Similarity=0.102 Sum_probs=134.2
Q ss_pred CCEEEEE-cCCeEEEEEcCCCceEEecC--C------------CccEEEEEEcCC--EEEEE-eCCCcEEEEEccCCCCC
Q 011711 243 GPWVFVG-MPNVVKAWHIESSAEFSLDG--P------------VGEVYSMVVANE--MLFAG-AQDGNILVWKGIPNTQN 304 (479)
Q Consensus 243 ~~~l~~~-~~~~i~v~~~~~~~~~~~~~--~------------~~~v~~~~~~~~--~l~~g-~~dg~i~iwd~~~~~~~ 304 (479)
+.++++. .++.|+++|........... . -..-..++++++ .|+++ ..++.|+++|..++..
T Consensus 580 g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V- 658 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETV- 658 (1057)
T ss_pred CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-
Confidence 3344443 56778888876654333221 1 123467777654 45554 4457788898766431
Q ss_pred cccceeeecC----------C-------CCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCC---------
Q 011711 305 PFQLAALLKG----------H-------TRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH--------- 355 (479)
Q Consensus 305 ~~~~~~~~~~----------h-------~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h--------- 355 (479)
.++.+ . -..-..++++ +..+++.+.++.|++||..++... .+.+.
T Consensus 659 -----~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~ 732 (1057)
T PLN02919 659 -----RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGS 732 (1057)
T ss_pred -----EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCC
Confidence 11110 0 0122466775 455677778899999999876542 22211
Q ss_pred ------CCCcEEEEEc--CC-EEEEEeCCCeEEEEEcCCCcceEEeccc------------cCcc-----ceEEEeeeeC
Q 011711 356 ------TDAPMSLLCW--DQ-YLLSCSLDNTIKVWIMTEEGNLEVAYTH------------NEDH-----GVLALGGLND 409 (479)
Q Consensus 356 ------~~~v~~~~~~--~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------~~~~-----~~~~~~~~~~ 409 (479)
-.....++++ ++ ++++-+.++.|++||+.++......... .... ......+.++
T Consensus 733 ~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd 812 (1057)
T PLN02919 733 SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA 812 (1057)
T ss_pred ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence 0123445555 55 4556666799999999865432111000 0000 0001123346
Q ss_pred CCCCcEEEEEeCCCeEEEeecCCCceeeeeec--------------cCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 410 PDGNPVLICSCNDDSVHLYELPSFMERGRIFS--------------RREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 410 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------------~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
++|. ++++-..++.|++||..++........ -.....++++++| ++++-+.++.|++|++.++.
T Consensus 813 ~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 813 KDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 8887 788888899999999987765432211 1257889999999 88888999999999998765
Q ss_pred C
Q 011711 475 N 475 (479)
Q Consensus 475 ~ 475 (479)
.
T Consensus 892 ~ 892 (1057)
T PLN02919 892 A 892 (1057)
T ss_pred c
Confidence 3
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.63 E-value=2.6e-07 Score=84.37 Aligned_cols=158 Identities=12% Similarity=0.163 Sum_probs=104.3
Q ss_pred CCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCee---EeCCCC
Q 011711 94 PSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC---VKGDEC 170 (479)
Q Consensus 94 ~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~---~~g~~d 170 (479)
..+..+++|+++|.+-.+....+.+...... .....+..... +. ...+.+.-..... ...+++
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~---~~kl~~~~~v~----------~~-~~ai~~~~~~~sv~v~dkagD~ 131 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPK---GAKLLDVSCVP----------KR-PTAISFIREDTSVLVADKAGDV 131 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCC---cceeeeEeecc----------cC-cceeeeeeccceEEEEeecCCc
Confidence 5666789999999887666655655444322 01111111111 11 1111122222211 234566
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEc
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGM 250 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (479)
..+.+|+...+ ....+-||-+.+++++|+||+++++|+..|..|+|-....--.+..+
T Consensus 132 ~~~di~s~~~~--~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-------------------- 189 (390)
T KOG3914|consen 132 YSFDILSADSG--RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF-------------------- 189 (390)
T ss_pred eeeeeeccccc--CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh--------------------
Confidence 67777777653 34456699999999999999999999999999999776543332222
Q ss_pred CCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCC
Q 011711 251 PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQ 303 (479)
Q Consensus 251 ~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~ 303 (479)
..+|...|..++..++ .|++|+.|++|++||+.++..
T Consensus 190 ----------------clGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 190 ----------------CLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred ----------------ccccHhheeeeeeccCceeeecCCCCcEEEEecccCCc
Confidence 2368899999999888 779999999999999998865
No 293
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.62 E-value=5.4e-07 Score=90.27 Aligned_cols=177 Identities=15% Similarity=0.183 Sum_probs=127.5
Q ss_pred CEEEEEcCCeEEEEEcCCCceEEecCC-CccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEE
Q 011711 244 PWVFVGMPNVVKAWHIESSAEFSLDGP-VGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (479)
Q Consensus 244 ~~l~~~~~~~i~v~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l 322 (479)
.++.+|....+..+|+++.++.....- .+.|.-|..++..+++|...|+|.+-|.++. +.+.++.+|++.|..+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~-----~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF-----ETIHTFDAHSGSISDF 223 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcC-----ceeeeeeccccceeee
Confidence 344555677777888888777654432 3357888888889999999999999998874 5689999999999999
Q ss_pred EEcCCEEEEEeC---------CCeEEEEECCCCcEEEEEeCCCCC-cEEEEEc-CCEEEEEeCCCeEEEEE---cCCCcc
Q 011711 323 AVGGKRLYSGSM---------DNTIRVWDLDTLEAVMTLNGHTDA-PMSLLCW-DQYLLSCSLDNTIKVWI---MTEEGN 388 (479)
Q Consensus 323 ~~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~h~~~-v~~~~~~-~~~l~s~s~dg~i~iwd---~~~~~~ 388 (479)
...|+.|++++. |.-|++||+++.+.+.-+.-+.++ ...+.+. ...++.++..|+..+-| +.+..
T Consensus 224 Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~- 302 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP- 302 (1118)
T ss_pred eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCc-
Confidence 999999999874 566899999998877666655554 2222222 57788999999999998 33331
Q ss_pred eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 011711 389 LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (479)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd 429 (479)
......+..... ...+..+++++ .++.|..+|.|.+|.
T Consensus 303 ~~~~~v~p~~s~--i~~fDiSsn~~-alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSG--ISAFDISSNGD-ALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCc--ceeEEecCCCc-eEEEecccCcEeeec
Confidence 112222222112 22333468887 899999999999997
No 294
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.62 E-value=3.6e-07 Score=78.65 Aligned_cols=195 Identities=15% Similarity=0.240 Sum_probs=114.1
Q ss_pred EEEEEEcCC-EEEEEeCCCcEEEEEccCCCC-------CcccceeeecCCCC--CeEEEEEcCCEEEEEeCCCeEEEEEC
Q 011711 274 VYSMVVANE-MLFAGAQDGNILVWKGIPNTQ-------NPFQLAALLKGHTR--PVTCLAVGGKRLYSGSMDNTIRVWDL 343 (479)
Q Consensus 274 v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~-------~~~~~~~~~~~h~~--~i~~l~~~~~~l~sgs~dg~I~iwd~ 343 (479)
+..+.+..+ .|+++..++.+..+....... ........+..|.+ +-..+..-++.+++++.||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 455555555 777777776665544322110 00111222333332 33333344888999999999999998
Q ss_pred CCCcEE-EEEeC-CCCCc-EEEEEcCCEEEEEeC-----CCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcE
Q 011711 344 DTLEAV-MTLNG-HTDAP-MSLLCWDQYLLSCSL-----DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPV 415 (479)
Q Consensus 344 ~~~~~~-~~~~~-h~~~v-~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (479)
+....+ ..+.. |.+.. .++...++++.++.- -+..+.|+++..+.+.........+..+ ..+|..+.+
T Consensus 119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l----~~hp~qq~~ 194 (319)
T KOG4714|consen 119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTAL----CSHPAQQHL 194 (319)
T ss_pred hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhh----hCCcccccE
Confidence 762111 11111 11111 111122444444322 3446677766544332222222222222 235777779
Q ss_pred EEEEeCCCeEEEeecCCCceeeeee--ccCceEEEEECCCc--eEEEEcCCCcEEEEEecc
Q 011711 416 LICSCNDDSVHLYELPSFMERGRIF--SRREVRVIETGPDG--LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 416 l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~ 472 (479)
+++|+.||.+-+||.+.......+. |+.+++.+-|+|.. .|+++++||.+..||-+.
T Consensus 195 v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999999999999875544443 58999999999977 999999999999999774
No 295
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.61 E-value=0.00012 Score=79.82 Aligned_cols=237 Identities=16% Similarity=0.189 Sum_probs=137.5
Q ss_pred EEEEeCCC-CCEEEEEeCCCcEEEEECCCCceEEEEec-CC--------------cee--EEEeCCCEEEEE--cCCeEE
Q 011711 196 SGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINL-GA--------------EVG--SLICEGPWVFVG--MPNVVK 255 (479)
Q Consensus 196 ~~l~~s~~-~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~-~~--------------~~~--~~~~~~~~l~~~--~~~~i~ 255 (479)
..++++++ +..+++-+.++.|+++|.. ++.+..+.. +. ... ++..+++.++++ .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35777764 6677777788899999976 444443332 10 012 233355655443 457899
Q ss_pred EEEcCCCceEEecCC-----------------CccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCCccc---ceeee
Q 011711 256 AWHIESSAEFSLDGP-----------------VGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQ---LAALL 312 (479)
Q Consensus 256 v~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~~ 312 (479)
.+|..++...++.+. -..-..++++++ ++++...++.|++||...+....+. .....
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence 999887765443211 112356788873 5666677889999998665321000 00000
Q ss_pred cCC------CCCeEEEEEc--CC-EEEEEeCCCeEEEEECCCCcEEEEEeC-------------C--------CCCcEEE
Q 011711 313 KGH------TRPVTCLAVG--GK-RLYSGSMDNTIRVWDLDTLEAVMTLNG-------------H--------TDAPMSL 362 (479)
Q Consensus 313 ~~h------~~~i~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~-------------h--------~~~v~~~ 362 (479)
.++ -.....|+++ ++ ++++-+.++.|++||+.++.......+ + -.....+
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 111 1234457775 55 455666779999999987653211100 0 0123455
Q ss_pred EEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccC----------ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeec
Q 011711 363 LCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE----------DHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 363 ~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 430 (479)
.++ ++.+++-+.++.|++||..++...... .... ........+..+++|+ ++++-+.++.|++||+
T Consensus 810 avd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDL 887 (1057)
T ss_pred eEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEEC
Confidence 555 678888888999999999776433222 1110 0000111223358887 7888889999999999
Q ss_pred CCCce
Q 011711 431 PSFME 435 (479)
Q Consensus 431 ~~~~~ 435 (479)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88764
No 296
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1e-05 Score=80.03 Aligned_cols=237 Identities=14% Similarity=0.092 Sum_probs=160.4
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCc
Q 011711 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVG 272 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~ 272 (479)
..-.++.|+|.| ++|-|+. ..|.+-|..+-+.++.++. |..
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~-------------------------------------h~s 56 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIEL-------------------------------------HQS 56 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhcccc-------------------------------------Ccc
Confidence 335677888777 4444443 5788888877777766653 445
Q ss_pred cEEEEEEcC-------------C-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc------CCEEEEE
Q 011711 273 EVYSMVVAN-------------E-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG------GKRLYSG 332 (479)
Q Consensus 273 ~v~~~~~~~-------------~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~------~~~l~sg 332 (479)
.|+.+.|.| . .|+++...|.|.+||...... ...+..|.+++..++|- ...|+.-
T Consensus 57 ~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~-----~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI 131 (1062)
T KOG1912|consen 57 AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV-----INWLSHSNDSVQDLCWVPARDDSRDVLLAI 131 (1062)
T ss_pred ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh-----hhhhcCCCcchhheeeeeccCcchheeEEe
Confidence 555555542 1 688888999999999987653 55678889999999982 3567777
Q ss_pred eCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCC-------cceEEeccccC-----
Q 011711 333 SMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEE-------GNLEVAYTHNE----- 397 (479)
Q Consensus 333 s~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~----- 397 (479)
..-.+|.+|+..+|+.+.+.........++.++ ...+..-+..|.+.+-+.-.. +..+....|..
T Consensus 132 h~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~le 211 (1062)
T KOG1912|consen 132 HGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLE 211 (1062)
T ss_pred cCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhh
Confidence 778899999999999999888776766777776 455666666676666654211 11222222111
Q ss_pred -----------cc-----ceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc---eEE
Q 011711 398 -----------DH-----GVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG---LFF 457 (479)
Q Consensus 398 -----------~~-----~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g---~l~ 457 (479)
.. ...+..+.++|.-+..+... ....+.++|++-...+..+.- .+.+.-+.+-|++ .|+
T Consensus 212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lf 290 (1062)
T KOG1912|consen 212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALF 290 (1062)
T ss_pred hhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEE
Confidence 00 00111223456655455544 467799999998888877764 5667778888877 899
Q ss_pred EEcCCCcEEEEEeccCC
Q 011711 458 TGDGTGMLSVWKILAKP 474 (479)
Q Consensus 458 sg~~dg~v~vw~~~~~~ 474 (479)
+.-.||.+.+|--+..+
T Consensus 291 clH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 291 CLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred EEecCCeEEEEEeeccC
Confidence 99999999999876633
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.58 E-value=5.5e-05 Score=66.76 Aligned_cols=234 Identities=13% Similarity=0.120 Sum_probs=120.6
Q ss_pred CeeEeCCCCCeEEEeecCCCceee-EEEecccc---cEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCcee
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTML-AKLEGHKK---AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG 237 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~-~~~~~H~~---~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~ 237 (479)
+++++.-.|..|.|=...+.+..+ .+.+.+++ .=..++||||+.+||.+...|+|+++|+... .+..++.....
T Consensus 9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~- 86 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSF- 86 (282)
T ss_pred CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCccccc-
Confidence 344444555666666665554322 33333333 3467999999999999999999999998753 33333321100
Q ss_pred EEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcC-----C---EEEEEeCCCcEEEEEccCCCCCcccce
Q 011711 238 SLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-----E---MLFAGAQDGNILVWKGIPNTQNPFQLA 309 (479)
Q Consensus 238 ~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~-----~---~l~~g~~dg~i~iwd~~~~~~~~~~~~ 309 (479)
. ..-...|..+.|.+ + .|++-..+|.++-|-+..++...++..
T Consensus 87 ----~-------------------------~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~ 137 (282)
T PF15492_consen 87 ----P-------------------------GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQEN 137 (282)
T ss_pred ----C-------------------------CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceee
Confidence 0 00112233333321 1 566667788888777644332223333
Q ss_pred eee--cC-CCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc---CCEE-EEEeCCCe---
Q 011711 310 ALL--KG-HTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYL-LSCSLDNT--- 377 (479)
Q Consensus 310 ~~~--~~-h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l-~s~s~dg~--- 377 (479)
..+ .. +...|.++.++ .++|++|+.... +++. -.+....+++...- +-+. ++...|+.
T Consensus 138 hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~ 207 (282)
T PF15492_consen 138 HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITAS 207 (282)
T ss_pred EEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCcccccc
Confidence 333 22 46789999997 456666654322 0000 00111112222111 1111 11111211
Q ss_pred ---EEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec
Q 011711 378 ---IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS 441 (479)
Q Consensus 378 ---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 441 (479)
-.+|.+-+.............+..+.+ +|||+ +|++...+|.|.+|++++.........
T Consensus 208 ~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl----SPdg~-~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 208 SKRRGLLRIPSFKFFSRQGQEQDGIFKMSL----SPDGS-LLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ccccceeeccceeeeeccccCCCceEEEEE----CCCCC-EEEEEEcCCeEEEEecCcchhhcccch
Confidence 122322221111111112233333333 69999 899999999999999999877776654
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=1.1e-05 Score=80.32 Aligned_cols=178 Identities=14% Similarity=0.147 Sum_probs=127.7
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 233 (479)
..|.......++-|..+|.+++++.... + .+...|... ..+|.+++|||.||+|.|-.+.+.+....+..+
T Consensus 42 is~~av~~~~~~~GtH~g~v~~~~~~~~--~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~ 112 (846)
T KOG2066|consen 42 ISCCAVHDKFFALGTHRGAVYLTTCQGN--P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK 112 (846)
T ss_pred HHHHHhhcceeeeccccceEEEEecCCc--c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC
Confidence 4566666778888999999999998654 2 444455544 568999999999999999998888776665533
Q ss_pred CceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-------EEEEEeCCCcEEEEEccCCCCCcc
Q 011711 234 AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-------MLFAGAQDGNILVWKGIPNTQNPF 306 (479)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-------~l~~g~~dg~i~iwd~~~~~~~~~ 306 (479)
.++.+++++|+ ++++|+.-| +.++.-+--..
T Consensus 113 --------------------------------------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--- 150 (846)
T KOG2066|consen 113 --------------------------------------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--- 150 (846)
T ss_pred --------------------------------------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC---
Confidence 34566677666 789999998 77775322111
Q ss_pred cceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCc------EEEEEcC-CEEEEEeCCCeEE
Q 011711 307 QLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAP------MSLLCWD-QYLLSCSLDNTIK 379 (479)
Q Consensus 307 ~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v------~~~~~~~-~~l~s~s~dg~i~ 379 (479)
+....+..-.++|.++.|.|++++=++.+| |++||+.+.+.+..++.....+ ..+.|.+ ..|+.| ...+|+
T Consensus 151 k~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG-W~d~v~ 228 (846)
T KOG2066|consen 151 KDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG-WGDSVK 228 (846)
T ss_pred ccceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe-cCCeEE
Confidence 112245666889999999999999998776 8999999999888876544332 3444554 455555 445789
Q ss_pred EEEcC
Q 011711 380 VWIMT 384 (479)
Q Consensus 380 iwd~~ 384 (479)
|..++
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 98887
No 299
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.54 E-value=0.00011 Score=73.73 Aligned_cols=256 Identities=11% Similarity=0.066 Sum_probs=156.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecCCc-------ee--E-EEeC-CCEEEEEcCCeEEEEEcCCCceEEecCCCc
Q 011711 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLGAE-------VG--S-LICE-GPWVFVGMPNVVKAWHIESSAEFSLDGPVG 272 (479)
Q Consensus 204 ~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~-------~~--~-~~~~-~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~ 272 (479)
+..++.++.++.|.-.|..+|+.+..+..... .. . ...+ +.+++...++.|..+|.++++.+-......
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 45677788889999999999998887765433 00 1 1124 556666688999999999998763322221
Q ss_pred c------E-EEEEEcCCEEEEEe---------CCCcEEEEEccCCCCCcccceeeecCC-------------------C-
Q 011711 273 E------V-YSMVVANEMLFAGA---------QDGNILVWKGIPNTQNPFQLAALLKGH-------------------T- 316 (479)
Q Consensus 273 ~------v-~~~~~~~~~l~~g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~h-------------------~- 316 (479)
. + .+..+..+.+++++ .+|.+..+|..+++.. -..... .
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~-----W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL-----WRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee-----eEeeccCCCcCCCCCCCCCcceecCCC
Confidence 1 1 12234445666665 3678899998887642 111110 0
Q ss_pred CCeE-EEEEc--CCEEEEEeCCC------------------eEEEEECCCCcEEEEEeCCCCC----------c-EEEE-
Q 011711 317 RPVT-CLAVG--GKRLYSGSMDN------------------TIRVWDLDTLEAVMTLNGHTDA----------P-MSLL- 363 (479)
Q Consensus 317 ~~i~-~l~~~--~~~l~sgs~dg------------------~I~iwd~~~~~~~~~~~~h~~~----------v-~~~~- 363 (479)
..+. +.+++ +..++.++.++ .|.-+|.++++.+.+++.-... + ..+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0111 23333 67788887665 7999999999999887532110 1 1111
Q ss_pred EcCC---EEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEE-----------------EeCCC
Q 011711 364 CWDQ---YLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLIC-----------------SCNDD 423 (479)
Q Consensus 364 ~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-----------------~~~dg 423 (479)
.++. .++.++.+|.+...|.++++.+......... +.. +| +. +++. ...+|
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~---~~~----~~-~~-vyv~~~~~~~~~~~~~~~~~~~~~~G 366 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP---MAY----DP-GL-VYLGAFHIPLGLPPQKKKRCKKPGKG 366 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccc---ccc----CC-ce-EEEccccccccCcccccCCCCCCCce
Confidence 2232 6788889999999999999876654322110 111 12 21 2221 12467
Q ss_pred eEEEeecCCCceeeeeecc---------Cce--EEEEECCCceEEEEcCCCcEEEEEeccCC
Q 011711 424 SVHLYELPSFMERGRIFSR---------REV--RVIETGPDGLFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 424 ~v~iwd~~~~~~~~~~~~~---------~~v--~~l~~s~~g~l~sg~~dg~v~vw~~~~~~ 474 (479)
.+.-.|+.+++.+.+.... .+. ..+... ++.|+.++.||.|+.+|..+++
T Consensus 367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~-g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATA-GNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEec-CCeEEEECCCCeEEEEECCCCc
Confidence 8888899998888776543 111 122222 2488888899999999987764
No 300
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.51 E-value=0.00088 Score=61.82 Aligned_cols=265 Identities=15% Similarity=0.156 Sum_probs=159.4
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEe----------CCCcEEEEECCCCceEEEEecCCc-----
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS----------RDGTVQLWDCHTGQSASVINLGAE----- 235 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s----------~Dg~v~vwd~~~~~~~~~~~~~~~----- 235 (479)
+.+.|+|.+++ +.+-.+.. +-.-.+..+|+++.+++++ ..-.|.+||..+-+...++..+..
T Consensus 17 ~rv~viD~d~~-k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSG-KLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTT-EEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCC-cEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 47999998888 66666653 3334466789999998764 245799999999998887776643
Q ss_pred -----eeEEEeCCCEEEEE---cCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCccc
Q 011711 236 -----VGSLICEGPWVFVG---MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307 (479)
Q Consensus 236 -----~~~~~~~~~~l~~~---~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 307 (479)
...++.+++++++. -...|.+.|+..++......-.+...-.-..++.+.+-+.||.+.-..+.........
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 12344577777765 3468888888888876544444444444445568999999999999999855432222
Q ss_pred ceeeecCCCCCeE-EEEE--cCCEEEEEeCCCeEEEEECCCCcEE--EEEeCCC----------C--CcEEEEEcCCEEE
Q 011711 308 LAALLKGHTRPVT-CLAV--GGKRLYSGSMDNTIRVWDLDTLEAV--MTLNGHT----------D--APMSLLCWDQYLL 370 (479)
Q Consensus 308 ~~~~~~~h~~~i~-~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~h~----------~--~v~~~~~~~~~l~ 370 (479)
....+.....++. .-.+ .+..++--+.+|.|+--|+...... ..+..-. + .+.++....+.|+
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 2222333334433 2222 2556666789999999998765532 2222111 1 1222222233333
Q ss_pred EEeC--------CC--eEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEE-eCCCeEEEeecCCCceeeee
Q 011711 371 SCSL--------DN--TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICS-CNDDSVHLYELPSFMERGRI 439 (479)
Q Consensus 371 s~s~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~ 439 (479)
.--. |+ .|-++|+.+.+.+..+... .++..+.++ .+.+++|++. ..++.+.+||..+++.+..+
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vs----qd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVS----QDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEE----SSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEc----cCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 3211 22 3666788888777666543 233445553 6677677655 45799999999999999888
Q ss_pred eccC
Q 011711 440 FSRR 443 (479)
Q Consensus 440 ~~~~ 443 (479)
..-+
T Consensus 329 ~~lG 332 (342)
T PF06433_consen 329 EQLG 332 (342)
T ss_dssp ---S
T ss_pred hccC
Confidence 7633
No 301
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.49 E-value=0.0002 Score=67.90 Aligned_cols=277 Identities=12% Similarity=0.113 Sum_probs=165.0
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-ceeEEEeCCCEEEEE------------
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA-EVGSLICEGPWVFVG------------ 249 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~------------ 249 (479)
..-..+..-.-++..++|||.|.+|++....+ |.+|+-.....+..+.+.. ....+.+.+.+|.+-
T Consensus 23 ~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 23 VIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred cccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhcc
Confidence 44444554667899999999999999887754 9999988776555555433 344566677777652
Q ss_pred ----cCCeEEEEEcCCCceEE-ecCCCcc-----EEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCe
Q 011711 250 ----MPNVVKAWHIESSAEFS-LDGPVGE-----VYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (479)
Q Consensus 250 ----~~~~i~v~~~~~~~~~~-~~~~~~~-----v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i 319 (479)
.++.+.+||+.++..+. +...... +.....+..++|-- ....++++++ +.... ..+...++ ...|
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~-~~p~~~lr--~~gi 176 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE-EHPFKNLR--PVGI 176 (561)
T ss_pred CCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc-cCchhhcc--ccce
Confidence 23468999999998763 3332222 33333333333322 4457999997 33221 11112222 3456
Q ss_pred EEEEEc----CCEEEE-----EeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEe-----------CCCe
Q 011711 320 TCLAVG----GKRLYS-----GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS-----------LDNT 377 (479)
Q Consensus 320 ~~l~~~----~~~l~s-----gs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s-----------~dg~ 377 (479)
....++ +..|+. ...++.+++|.+..++.+.+-.-....-..+.|. |++|+.-- ....
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn 256 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN 256 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce
Confidence 666665 223333 4577889999998777665443333333444444 55443211 1356
Q ss_pred EEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEE-eCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-e
Q 011711 378 IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICS-CNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-L 455 (479)
Q Consensus 378 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~ 455 (479)
++++++......... ...++ .....|.|.++.+.++. -.+..+.++|++.. +........=..+.|+|.+ +
T Consensus 257 Lyl~~~~e~~i~V~~-~~~~p----Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~ 329 (561)
T COG5354 257 LYLLRITERSIPVEK-DLKDP----VHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERY 329 (561)
T ss_pred EEEEeecccccceec-ccccc----ceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccE
Confidence 788887644332222 22333 33445568776555444 68889999999875 3334445666788899988 5
Q ss_pred EEEEcC---CCcEEEEEecc
Q 011711 456 FFTGDG---TGMLSVWKILA 472 (479)
Q Consensus 456 l~sg~~---dg~v~vw~~~~ 472 (479)
++.++- .|.|.+|+...
T Consensus 330 il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred EEEecCCccccceEEeccCC
Confidence 555443 57888888654
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=9.4e-07 Score=81.81 Aligned_cols=198 Identities=13% Similarity=0.104 Sum_probs=146.2
Q ss_pred EEeccCCeeEeCCCCCeEEEeecCC--CceeeEEEecccccEEEEEeCCCCCEEEEEeC-CCcEEEEECCCCceEEEEec
Q 011711 156 CYHWLSGNCVKGDECRFWHSWFCGE--GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTGQSASVINL 232 (479)
Q Consensus 156 c~~~~~~~~~~g~~d~~i~vw~~~~--~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~-Dg~v~vwd~~~~~~~~~~~~ 232 (479)
|+......+.+++-||.++-|.... +.+.+..+..|-..|.+++.+-++.++.|.+. |..++++|+++-..+.-+.+
T Consensus 15 v~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL 94 (558)
T KOG0882|consen 15 VFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL 94 (558)
T ss_pred EeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc
Confidence 5566677889999999999999864 56777888899999999999999999999887 99999999988765544443
Q ss_pred ---CCceeEEEeCCC---EEEEE--cCCeEEEEEcCCCce---EEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEcc
Q 011711 233 ---GAEVGSLICEGP---WVFVG--MPNVVKAWHIESSAE---FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGI 299 (479)
Q Consensus 233 ---~~~~~~~~~~~~---~l~~~--~~~~i~v~~~~~~~~---~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~ 299 (479)
+..+..+...|. .++++ .++.+.++|-..... ..-.-|..+|..+.+.+- .+++....|.|.-|...
T Consensus 95 ~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 95 VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence 333444444442 44444 678899998766542 234568899999998865 78888889999999977
Q ss_pred CCCCCc-----ccc-----eeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEe
Q 011711 300 PNTQNP-----FQL-----AALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (479)
Q Consensus 300 ~~~~~~-----~~~-----~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 353 (479)
..-+.+ +++ +..+.......+++.++ +..+.+-+.|..|++++.++++.++.+.
T Consensus 175 ~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 175 GPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred CcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 411100 111 11112234456677775 8899999999999999999999888775
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.46 E-value=0.00022 Score=63.08 Aligned_cols=191 Identities=17% Similarity=0.169 Sum_probs=105.4
Q ss_pred cCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeec-CCCCCeEEEEEc--------CCEEEEEeCCC
Q 011711 268 DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLK-GHTRPVTCLAVG--------GKRLYSGSMDN 336 (479)
Q Consensus 268 ~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~h~~~i~~l~~~--------~~~l~sgs~dg 336 (479)
+....+-..++|++| .||.+...|+|++||+.....-...+..... .-...|..+.|- ...|++-..+|
T Consensus 40 kD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G 119 (282)
T PF15492_consen 40 KDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG 119 (282)
T ss_pred CCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccc
Confidence 344556678899998 8899999999999998764321111111111 123456667662 23577777888
Q ss_pred eEEEEECC-----CCcEEEEEe--C-CCCCcEEEEEcC--CEEEEEeCCCe-EEEEEcCCCcceEEeccccCccceEEEe
Q 011711 337 TIRVWDLD-----TLEAVMTLN--G-HTDAPMSLLCWD--QYLLSCSLDNT-IKVWIMTEEGNLEVAYTHNEDHGVLALG 405 (479)
Q Consensus 337 ~I~iwd~~-----~~~~~~~~~--~-h~~~v~~~~~~~--~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 405 (479)
.++-|-+. ..+..+++. . +...|.++.+++ ++|+.|+.... -..+. ... ....++.
T Consensus 120 ~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~-----------a~~--~GLtaWR 186 (282)
T PF15492_consen 120 QLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK-----------ASS--CGLTAWR 186 (282)
T ss_pred eeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc-----------ccc--cCceEEE
Confidence 88877653 233344443 3 355788888883 55555554321 00000 001 1111111
Q ss_pred eee-CCCCCcEEEEEeCCCe------EEEeecCCCceeee-eeccCceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 406 GLN-DPDGNPVLICSCNDDS------VHLYELPSFMERGR-IFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 406 ~~~-~~~~~~~l~s~~~dg~------v~iwd~~~~~~~~~-~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
... +|..+ .+....|+. -.+|.+.+...... ......|..|..|||| .|++...+|.|.+|++..-
T Consensus 187 iL~~~Pyyk--~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 187 ILSDSPYYK--QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EcCCCCcEE--EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 110 11111 111222211 13343333222211 1236789999999999 9999999999999998763
No 304
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.43 E-value=0.00074 Score=72.43 Aligned_cols=271 Identities=11% Similarity=0.057 Sum_probs=137.1
Q ss_pred ccccEEEEEeCCCCCEEEEEeCCCcEEEE----ECCCCceE--EEEecCCceeEEEeCCCEEEEE-cCCeEEEEEcCCCc
Q 011711 191 HKKAVSGIALPLRSDKLYSGSRDGTVQLW----DCHTGQSA--SVINLGAEVGSLICEGPWVFVG-MPNVVKAWHIESSA 263 (479)
Q Consensus 191 H~~~V~~l~~s~~~~~l~s~s~Dg~v~vw----d~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~-~~~~i~v~~~~~~~ 263 (479)
..+.|.++.+-++...++.+..+|.|.+. +..+.+.. ..+..+-...+.++++.+++.. .++++.+.+-.-..
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 35789999999999999999999999998 55444332 2222222222222344433322 33333333211100
Q ss_pred eEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCC------Ccccc---eeeecCCCCCeEEEEE--cCCEEEEE
Q 011711 264 EFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQ------NPFQL---AALLKGHTRPVTCLAV--GGKRLYSG 332 (479)
Q Consensus 264 ~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~------~~~~~---~~~~~~h~~~i~~l~~--~~~~l~sg 332 (479)
..... +..-.+..+..++.+...+=.-|.-..++. .+..+ ...+. +...-..|+| +|.++++.
T Consensus 154 i~E~~-----l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 154 ISEVP-----LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred EEEee-----cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEE
Confidence 00000 000111111222222221111111111110 00000 01122 3445567888 48899887
Q ss_pred eC---C---CeEEEEECCCCcEEEEEeCCCCCcEEEEE--cCCEEEEEeC---CCeEEEEEcCCCcceEEeccccCccce
Q 011711 333 SM---D---NTIRVWDLDTLEAVMTLNGHTDAPMSLLC--WDQYLLSCSL---DNTIKVWIMTEEGNLEVAYTHNEDHGV 401 (479)
Q Consensus 333 s~---d---g~I~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~ 401 (479)
+. . ..|++|+-+ |++..+-+.-.+--.+++| .|++|++... ...|.+|.-+.- .-..+.........
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL-rhgeF~l~~~~~~~ 305 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL-RHGEFTLRFDPEEE 305 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc-EeeeEecCCCCCCc
Confidence 74 2 579999955 6654444433332334444 4888888765 345666653322 11122211112222
Q ss_pred EEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCce--eeee--eccCceEEEEECCCc--eEEEEcCCCcEEEEEec
Q 011711 402 LALGGLNDPDGNPVLICSCNDDSVHLYELPSFME--RGRI--FSRREVRVIETGPDG--LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 402 ~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~--~~~~~v~~l~~s~~g--~l~sg~~dg~v~vw~~~ 471 (479)
....+.|++++. +|+....|. |.+|...+..- ...+ .....+..+.|+|.. .|.....+|.+..+++.
T Consensus 306 ~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 306 KVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred eeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 335567789998 777766554 99999887532 2222 224456669999977 77777777877666553
No 305
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=0.00015 Score=69.44 Aligned_cols=266 Identities=10% Similarity=0.066 Sum_probs=159.8
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-CceeEEEeCCCEEEEE------------cCCeEEEEEcCC
Q 011711 195 VSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG-AEVGSLICEGPWVFVG------------MPNVVKAWHIES 261 (479)
Q Consensus 195 V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~------------~~~~i~v~~~~~ 261 (479)
=+-+.|||.|.||+|--.-| |.+|--++-..++.+.+. -....+++..++|++- ....+.+||+.+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 46689999999999998866 899987777666666654 3456677888888763 125899999999
Q ss_pred CceEEe-cC---CCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEe
Q 011711 262 SAEFSL-DG---PVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGS 333 (479)
Q Consensus 262 ~~~~~~-~~---~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs 333 (479)
+..... .. ....-.-+.|+.+ ++|--.. ..|.||+..+- .++..-.-.-..|....|+ ++.|+-=.
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf-----~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF-----MLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce-----eeecccccCCccccCcccCCCcceEEEEc
Confidence 987532 21 1111222345544 5555444 67999986552 2222222234456667776 44444322
Q ss_pred C-----CCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEe----------CCCeEEEEEcCCCcceEEecccc
Q 011711 334 M-----DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS----------LDNTIKVWIMTEEGNLEVAYTHN 396 (479)
Q Consensus 334 ~-----dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~ 396 (479)
. --.+.+-.+.+++.+++.+.+.-.-..+.|- |++|+.-- .-..+.|+.++...........
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel- 444 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL- 444 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec-
Confidence 1 1245666666777776666554433333333 66665421 1223555555544332222222
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCC--CeEEEeecCCCc----eeeeeeccCceEEEEECCCc-eEEE---EcCCCcEE
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCND--DSVHLYELPSFM----ERGRIFSRREVRVIETGPDG-LFFT---GDGTGMLS 466 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~----~~~~~~~~~~v~~l~~s~~g-~l~s---g~~dg~v~ 466 (479)
.-..+.+.|.|.|+.+.+..+.+ .++.+|.+++.. .+..+ .....+.+.|+|.| .++. +|..|.+.
T Consensus 445 ---ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-dk~~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 445 ---KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-DKKFANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred ---chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-cccccceEEEcCCCcEEEEEEecccccceE
Confidence 22345566789998766665544 568889887422 12222 24678899999999 4443 35689999
Q ss_pred EEEecc
Q 011711 467 VWKILA 472 (479)
Q Consensus 467 vw~~~~ 472 (479)
++|.+.
T Consensus 521 F~D~~~ 526 (698)
T KOG2314|consen 521 FYDTDY 526 (698)
T ss_pred EEecch
Confidence 999874
No 306
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.36 E-value=0.0014 Score=57.16 Aligned_cols=295 Identities=15% Similarity=0.125 Sum_probs=159.9
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeE--
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS-- 238 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~-- 238 (479)
...++-|+..+.+.--|..++ +++.+- .-...|.+-+.- -|++++.|...|.+.+-+.++|+....+..-..+.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG-~~~We~-ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSG-NLIWEA-ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCC-cEEeeh-hhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 456777888888888888888 333221 112333322221 377899999999999999999988887776555443
Q ss_pred -EEeCCCEEEEE-cCCeEEEEEcCCCceEEecCCCccEE-EEEEc--CCEEEEEeCCCcEEEEEccCCCCCcccceeeec
Q 011711 239 -LICEGPWVFVG-MPNVVKAWHIESSAEFSLDGPVGEVY-SMVVA--NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLK 313 (479)
Q Consensus 239 -~~~~~~~l~~~-~~~~i~v~~~~~~~~~~~~~~~~~v~-~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 313 (479)
+.+++.++.++ .|+.....|..+...+-.....+.+. +-+.. +..|+++...|.|.--..+..... .. ...
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~---~~-w~~ 175 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSST---EF-WAA 175 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcc---ee-hhh
Confidence 34577777766 78999999998877653333333222 22233 347777777787766655443211 00 011
Q ss_pred CCCCCeEEE-EEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcE-----------EEEEc-CCEEEEEeCCCeEEE
Q 011711 314 GHTRPVTCL-AVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPM-----------SLLCW-DQYLLSCSLDNTIKV 380 (479)
Q Consensus 314 ~h~~~i~~l-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~-----------~~~~~-~~~l~s~s~dg~i~i 380 (479)
.-.++|.+- .+-+..+..+.-||.+.-+| ..|+.+..+.. .++|. .+.+. ++.+.+...-..-.+
T Consensus 176 ~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t-~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~ 253 (354)
T KOG4649|consen 176 TRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPAT-KGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLL 253 (354)
T ss_pred hcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeecC-CCceecccccCCCcceEEEEecCCeEEEeccccceEE
Confidence 112334322 11255566666777777777 55666654431 12221 11111 222222222222345
Q ss_pred EEcCCCcceEEeccccCccceEEEeeeeCCCC--CcEEEEEeCCCeEEEeecCCCceeeeee-cc---CceEEEEE----
Q 011711 381 WIMTEEGNLEVAYTHNEDHGVLALGGLNDPDG--NPVLICSCNDDSVHLYELPSFMERGRIF-SR---REVRVIET---- 450 (479)
Q Consensus 381 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~---~~v~~l~~---- 450 (479)
|..+++.........+- .+. ..+|.. ..++..++.||.+.|.-.... +..+. +. ..+..+..
T Consensus 254 w~~~~g~t~~vy~~p~l-----~F~-~h~~~~S~~~ll~~~s~dgkv~il~~~~s--l~~~~s~~g~lq~~~~~el~~eI 325 (354)
T KOG4649|consen 254 WATQSGTTLHVYLSPKL-----RFD-LHSPGISYPKLLRRSSGDGKVMILMTSKS--LAEISSNGGELQNLEAIELSNEI 325 (354)
T ss_pred EEecCCcEEEEEeCccc-----cee-ccCCCCcchhhhhhhcCCCcEEEEEeccc--ccccccCCCccceEEEeecCccc
Confidence 55555433222222111 111 011222 236777888998888743221 11111 11 11222222
Q ss_pred --CC---CceEEEEcCCCcEEEEEecc
Q 011711 451 --GP---DGLFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 451 --s~---~g~l~sg~~dg~v~vw~~~~ 472 (479)
+| +|+|+.|+.|..|+-||+..
T Consensus 326 FsSPvii~grl~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 326 FSSPVIIDGRLLIGCRDDYVRCLDLDT 352 (354)
T ss_pred ccCCeEEccEEEEEEccCeEEEEeccc
Confidence 22 56899999999999999875
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.36 E-value=1.1e-05 Score=71.50 Aligned_cols=207 Identities=13% Similarity=0.185 Sum_probs=128.1
Q ss_pred CCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCC------------CeEEEEEc----CCEEEE
Q 011711 270 PVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR------------PVTCLAVG----GKRLYS 331 (479)
Q Consensus 270 ~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~------------~i~~l~~~----~~~l~s 331 (479)
....|+++.|... ++++|...|.|.+|.-........+....+++|.. .|..+.|- .+.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4456788888755 88999888999999866544333444555666643 35566662 456777
Q ss_pred EeCCCeEEEEECCCCcE-------------------------------------E-----EEE-eCCCCCcEEEEEc-CC
Q 011711 332 GSMDNTIRVWDLDTLEA-------------------------------------V-----MTL-NGHTDAPMSLLCW-DQ 367 (479)
Q Consensus 332 gs~dg~I~iwd~~~~~~-------------------------------------~-----~~~-~~h~~~v~~~~~~-~~ 367 (479)
.+.|.+|++|.+..... + +.+ ..|.-.+.++++. ++
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 78999999998753200 0 001 2355556677776 33
Q ss_pred EEEEEeCCCeEEEEEcCCCcceE---Eecccc-CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCcee------e
Q 011711 368 YLLSCSLDNTIKVWIMTEEGNLE---VAYTHN-EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMER------G 437 (479)
Q Consensus 368 ~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~------~ 437 (479)
..+..+.|=.|.+|+++-..... .+..+. ++...+..+.-++|....++.-++..|.|++-|++..... .
T Consensus 185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 44445567789999887543222 222222 1122223334446766557777778999999999843211 1
Q ss_pred ee--e---c------cCceEEEEECCCceEEEEcCCCcEEEEEeccCCCC
Q 011711 438 RI--F---S------RREVRVIETGPDGLFFTGDGTGMLSVWKILAKPNA 476 (479)
Q Consensus 438 ~~--~---~------~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~~~~ 476 (479)
.. . + ...|..+.|+++|+++..-.--+|++||+...+++
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~p 314 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNP 314 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCC
Confidence 11 0 1 35688999999994444444568999999876654
No 308
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.35 E-value=0.00012 Score=70.57 Aligned_cols=268 Identities=15% Similarity=0.163 Sum_probs=136.1
Q ss_pred cEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEE--EEecCCce--eEEEeCCCEEEEEcCCeEEEEEcCCC---c---
Q 011711 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS--VINLGAEV--GSLICEGPWVFVGMPNVVKAWHIESS---A--- 263 (479)
Q Consensus 194 ~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~--~~~~~~~~--~~~~~~~~~l~~~~~~~i~v~~~~~~---~--- 263 (479)
.|+.+.|.++..-|+.+...|.|.||.....+... ......+. ..+. ..++.-.+-|+... .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFS--------LNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S----------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccccc--------ccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999999876654332 00000000 0000 00111112222211 0
Q ss_pred ----eEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceee---ecCCCCCeEEEEEc----------
Q 011711 264 ----EFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAAL---LKGHTRPVTCLAVG---------- 325 (479)
Q Consensus 264 ----~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---~~~h~~~i~~l~~~---------- 325 (479)
..-++...+.|.+++.++- ++++|.++|.+.|.|++.........+.. .......|+++.|.
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred ccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 0123445789999999755 99999999999999997654210000011 11234568888883
Q ss_pred CCEEEEEeCCCeEEEEECC--C-CcE----EEEEeCCCCCcEEEEEc----C-------------------CEEEEEeCC
Q 011711 326 GKRLYSGSMDNTIRVWDLD--T-LEA----VMTLNGHTDAPMSLLCW----D-------------------QYLLSCSLD 375 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~--~-~~~----~~~~~~h~~~v~~~~~~----~-------------------~~l~s~s~d 375 (479)
.-.+++|+..|.+.+|.+. . +.. ......+.+.+..+... + +-++....+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 2468999999999999774 1 211 12222456666665542 1 134444557
Q ss_pred CeEEEEEcCCCcceEEeccccCccceEEEeeee--CCCCCcEEEEEeCCCeEEEeecCCCceeeeeecc-----CceEEE
Q 011711 376 NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLN--DPDGNPVLICSCNDDSVHLYELPSFMERGRIFSR-----REVRVI 448 (479)
Q Consensus 376 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~v~~l 448 (479)
..++++...+.+...... .....+....... +..+...|++-..+|.|++|.++..+++...... ..+...
T Consensus 235 ~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp SEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred cceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 789999988776655554 2222222222211 1123347888889999999999999888777642 235667
Q ss_pred EECCCceEEEEcCCCcEEEEEec
Q 011711 449 ETGPDGLFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 449 ~~s~~g~l~sg~~dg~v~vw~~~ 471 (479)
.++++|.++.-.....+.++.+-
T Consensus 313 sis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 313 SISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred EECCCCCEEEEeCcccEEEEEEE
Confidence 77888833332234445555543
No 309
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.33 E-value=0.00068 Score=62.84 Aligned_cols=230 Identities=12% Similarity=0.095 Sum_probs=142.4
Q ss_pred EEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEE-------
Q 011711 156 CYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS------- 228 (479)
Q Consensus 156 c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~------- 228 (479)
|....+..++.|.++| +.+++........... +...|..+...++-+.|+.-+. +.+.++++..-....
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccccccc
Confidence 4455667888888888 8899984332333333 2334999999988887777764 999999987655443
Q ss_pred --------EEecCCceeEEE-----eCCCEEEEEcCCeEEEEEcCCC-----ceEEecCCCccEEEEEEcCCEEEEEeCC
Q 011711 229 --------VINLGAEVGSLI-----CEGPWVFVGMPNVVKAWHIESS-----AEFSLDGPVGEVYSMVVANEMLFAGAQD 290 (479)
Q Consensus 229 --------~~~~~~~~~~~~-----~~~~~l~~~~~~~i~v~~~~~~-----~~~~~~~~~~~v~~~~~~~~~l~~g~~d 290 (479)
.+.....+..+. .....+++.....|.+|..... ....-..-...+.++.|.++.++.|..+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~ 157 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSK 157 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCC
Confidence 122222233333 2455777888889999887663 2222233457889999999999998866
Q ss_pred CcEEEEEccCCCCCccccee-------eecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEE--EEeCCCCCcEE
Q 011711 291 GNILVWKGIPNTQNPFQLAA-------LLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVM--TLNGHTDAPMS 361 (479)
Q Consensus 291 g~i~iwd~~~~~~~~~~~~~-------~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~--~~~~h~~~v~~ 361 (479)
+ ..+.|+.++......... .......++..+..+.+.++.+. |..-...|. .|+..+ .+. -...+.+
T Consensus 158 ~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~~i~-W~~~p~~ 233 (275)
T PF00780_consen 158 G-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNK-NGEPSRKSTIQ-WSSAPQS 233 (275)
T ss_pred c-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cceEEEEcC-CCCcCcccEEE-cCCchhE
Confidence 4 778888865432110000 00112235556666634444443 333334444 344333 333 2346778
Q ss_pred EEEcCCEEEEEeCCCeEEEEEcCCCcceEEecc
Q 011711 362 LLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (479)
Q Consensus 362 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (479)
+.+...+|+..+.+ .|.||++.+++.++.+..
T Consensus 234 ~~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 234 VAYSSPYLIAFSSN-SIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEEECCEEEEECCC-EEEEEECcCCcEEEEEEC
Confidence 88888888887765 599999999877665553
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.30 E-value=0.0027 Score=57.74 Aligned_cols=204 Identities=15% Similarity=0.085 Sum_probs=126.2
Q ss_pred eEEEec-cCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeC-CCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 011711 154 NVCYHW-LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALP-LRSDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (479)
Q Consensus 154 ~~c~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s-~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 231 (479)
..++.. .+..+++.-..+.|+.|+..++......+.+ ...+++. +++ .|+.+..++ +.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEee
Confidence 445554 3334556667789999999887333322222 6667776 565 455555544 5666999987665554
Q ss_pred c--CC-c---ee--EEEeCCCEEEEEcC---------CeEEEEEcCCCceEEecCCCccEEEEEEcCC--EE-EEEeCCC
Q 011711 232 L--GA-E---VG--SLICEGPWVFVGMP---------NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--ML-FAGAQDG 291 (479)
Q Consensus 232 ~--~~-~---~~--~~~~~~~~l~~~~~---------~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l-~~g~~dg 291 (479)
. .. . .. .+.++|++.++... +.+..++.. ++...........+.++++++ .| ++-+..+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 3 11 1 22 23347776666432 456677777 444444444566789999987 44 5667788
Q ss_pred cEEEEEccCCCCC--cccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc
Q 011711 292 NILVWKGIPNTQN--PFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW 365 (479)
Q Consensus 292 ~i~iwd~~~~~~~--~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~ 365 (479)
.|..+++...... ..+....+.......-.++++ |++.++....+.|.++|.+ ++.+..+......++++++-
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 8999998754321 111222222222346788887 7777777789999999988 89998888776678888884
No 311
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.29 E-value=2.9e-05 Score=68.87 Aligned_cols=235 Identities=14% Similarity=0.187 Sum_probs=142.0
Q ss_pred ccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-eE----EEEecC-------------CceeEEEe-----CCCEEE
Q 011711 191 HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-SA----SVINLG-------------AEVGSLIC-----EGPWVF 247 (479)
Q Consensus 191 H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~-~~----~~~~~~-------------~~~~~~~~-----~~~~l~ 247 (479)
....|+++.|...|.||++|...|.|.++.-+... +. ..++.+ ..+..+.. ...+++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35779999999999999999999999999765432 11 112211 11222222 345888
Q ss_pred EEcCCeEEEEEcCCCceE--------------------------------------------EecCCCccEEEEEEcCC-
Q 011711 248 VGMPNVVKAWHIESSAEF--------------------------------------------SLDGPVGEVYSMVVANE- 282 (479)
Q Consensus 248 ~~~~~~i~v~~~~~~~~~--------------------------------------------~~~~~~~~v~~~~~~~~- 282 (479)
++.+.+|++|.+...... ....|..-++++.+..+
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 999999999987543110 01245556778888877
Q ss_pred EEEEEeCCCcEEEEEccCCCCCcccceeeecCCC-----CCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcE------
Q 011711 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT-----RPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEA------ 348 (479)
Q Consensus 283 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~-----~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~------ 348 (479)
..+....|=.|.+|++.-.... +. +..++.|. .-|++..|+ .+.+.-.+..|.|++-|++...+
T Consensus 185 et~lSaDdLrINLWnl~i~D~s-Fn-IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGS-FN-IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeeccceeeeeccccccCCc-eE-EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 5555667888999998654331 22 22233342 346777776 56777788899999999985322
Q ss_pred EEE--E--------eCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcc-eEEecccc-----------CccceEEE
Q 011711 349 VMT--L--------NGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN-LEVAYTHN-----------EDHGVLAL 404 (479)
Q Consensus 349 ~~~--~--------~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~-----------~~~~~~~~ 404 (479)
+.. + ..-...|..+.+. |+++++-+. -++++||++..+. +..+..|. ...---.+
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 111 1 1122345666666 566666554 5899999986643 33332221 11111233
Q ss_pred eeeeCCCCCcEEEEEeCCCeEEEee
Q 011711 405 GGLNDPDGNPVLICSCNDDSVHLYE 429 (479)
Q Consensus 405 ~~~~~~~~~~~l~s~~~dg~v~iwd 429 (479)
.+.++.+.+ .+.+|+..+..-+|-
T Consensus 342 eisfSgd~~-~v~sgsy~NNfgiyp 365 (460)
T COG5170 342 EISFSGDDK-HVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEecCCcc-cccccccccceeeec
Confidence 444555655 566676666666665
No 312
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.0015 Score=63.99 Aligned_cols=189 Identities=12% Similarity=0.046 Sum_probs=104.2
Q ss_pred cEEEEEeCCCCCE-EEEEeCC---CcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecC
Q 011711 194 AVSGIALPLRSDK-LYSGSRD---GTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDG 269 (479)
Q Consensus 194 ~V~~l~~s~~~~~-l~s~s~D---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~ 269 (479)
.+..-.|+|||+. ++..+.+ ..|.++|+.+++......
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-------------------------------------- 230 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-------------------------------------- 230 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--------------------------------------
Confidence 7788999999985 5544433 457788887776544332
Q ss_pred CCccEEEEEEcCC---EEEEEeC--CCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeC-CC--eEE
Q 011711 270 PVGEVYSMVVANE---MLFAGAQ--DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM-DN--TIR 339 (479)
Q Consensus 270 ~~~~v~~~~~~~~---~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~-dg--~I~ 339 (479)
..+......|+|+ ++++.+. +..|+++|+..+.. ..+..+........|+ |+.++..+. .+ .|.
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy 304 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIF 304 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE------EEcccCCCccCccEECCCCCEEEEEECCCCCceEE
Confidence 2222334456666 3333333 34677778766542 2222222222234564 766655543 33 688
Q ss_pred EEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCC---------CeEEEEEcCCCcceEEeccccCccceEEEeeeeCC
Q 011711 340 VWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLD---------NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDP 410 (479)
Q Consensus 340 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (479)
+.|+.+++..+.... ......++.+|+.|+..+.. ..|.+.|+.++.. ..+... ... ....|+|
T Consensus 305 ~~dl~~g~~~rlt~~-g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~----~~p~~SP 377 (419)
T PRK04043 305 MKKLNSGSVEQVVFH-GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVN----QFPRFSS 377 (419)
T ss_pred EEECCCCCeEeCccC-CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCc----CCeEECC
Confidence 889988776433221 11223455558877766543 3688888877653 333332 111 1245679
Q ss_pred CCCcEEEEEeCCCe--EEEeecCCC
Q 011711 411 DGNPVLICSCNDDS--VHLYELPSF 433 (479)
Q Consensus 411 ~~~~~l~s~~~dg~--v~iwd~~~~ 433 (479)
||+.++++....+. +.+.+++..
T Consensus 378 DG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 378 DGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCCEEEEEEccCCcEEEEEEecCCC
Confidence 99966665543333 556666543
No 313
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.25 E-value=0.0019 Score=60.93 Aligned_cols=202 Identities=11% Similarity=0.049 Sum_probs=136.8
Q ss_pred EEeCCCEEEEEcCCeEEEEEcCCCceEEecCC--C-------cc------EEEEEEc-CCEEEEEeCCCcEEEEEccCCC
Q 011711 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGP--V-------GE------VYSMVVA-NEMLFAGAQDGNILVWKGIPNT 302 (479)
Q Consensus 239 ~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~--~-------~~------v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~ 302 (479)
...+|+.++-...|.|.+||.++.....+.-. . .. ....+.. +++++..+ -|...+.+...+
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~- 351 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDG- 351 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCC-
Confidence 34588999999999999999988776433211 0 00 1112222 33555555 456666665443
Q ss_pred CCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC-eEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCe
Q 011711 303 QNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN-TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNT 377 (479)
Q Consensus 303 ~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~ 377 (479)
....-+|...|.-..+. ++-++.|..|| .+-|+|.++++. +.+...-+.|.++..+ |++++.+.....
T Consensus 352 ------~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~e 424 (668)
T COG4946 352 ------YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFE 424 (668)
T ss_pred ------eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceE
Confidence 22234567777766664 67899999999 899999988764 5566666778777776 788999998899
Q ss_pred EEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCC----eEEEeecCCCceeeeeeccCceEEEEECCC
Q 011711 378 IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD----SVHLYELPSFMERGRIFSRREVRVIETGPD 453 (479)
Q Consensus 378 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~ 453 (479)
|-+.|++++.....-... ..+...+.|+|+++ ++|-+--+| .|+++|+.+++..........=.+-+|.||
T Consensus 425 l~vididngnv~~idkS~----~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d 499 (668)
T COG4946 425 LWVIDIDNGNVRLIDKSE----YGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPD 499 (668)
T ss_pred EEEEEecCCCeeEecccc----cceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCC
Confidence 999999887643322222 33455566789988 777765554 689999998877665554444556678888
Q ss_pred c
Q 011711 454 G 454 (479)
Q Consensus 454 g 454 (479)
+
T Consensus 500 ~ 500 (668)
T COG4946 500 G 500 (668)
T ss_pred C
Confidence 8
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=3.1e-05 Score=77.15 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=124.6
Q ss_pred CccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEE
Q 011711 271 VGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVM 350 (479)
Q Consensus 271 ~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 350 (479)
...+.+++++...|+-|+.+|.|++++..... .....|... ...|.++++|+.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-------~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-------KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc-------ccccccccc----ccCCceEEEecCCCcEEEeeccCCccce
Confidence 34577888888899999999999999976542 223334433 3449999999999999999999888777
Q ss_pred EEeCCCCCcEEEEEc-------CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCC
Q 011711 351 TLNGHTDAPMSLLCW-------DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD 423 (479)
Q Consensus 351 ~~~~h~~~v~~~~~~-------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 423 (479)
++.-+ .++.+++.+ .+.+++|+.-| +.++.-+--+.......+.....+..++ | .|+ ++|-++.+|
T Consensus 108 ~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~--W--~g~-lIAWand~G 180 (846)
T KOG2066|consen 108 QYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIK--W--RGN-LIAWANDDG 180 (846)
T ss_pred eEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEE--e--cCc-EEEEecCCC
Confidence 66533 456666665 35799999988 7777543222222222232222333332 2 344 777776555
Q ss_pred eEEEeecCCCceeeeeec-------cCceEEEEECCCceEEEEcCCCcEEEEEeccC
Q 011711 424 SVHLYELPSFMERGRIFS-------RREVRVIETGPDGLFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 424 ~v~iwd~~~~~~~~~~~~-------~~~v~~l~~s~~g~l~sg~~dg~v~vw~~~~~ 473 (479)
|++||+.+.+.+..+.. ..-...+.|.++..|+.|=.| +|+|..+..+
T Consensus 181 -v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~~~ 235 (846)
T KOG2066|consen 181 -VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIKKR 235 (846)
T ss_pred -cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEecc
Confidence 89999999888877753 222556888888777777555 6899998844
No 315
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.22 E-value=0.00016 Score=71.27 Aligned_cols=161 Identities=11% Similarity=0.065 Sum_probs=114.5
Q ss_pred CCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 011711 152 PKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (479)
Q Consensus 152 ~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 231 (479)
..-.|+......++-|+.-|.+.+|+-..+........+-.+.+..++.+++..++|.|+..|.|.++.++.+.......
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 35778888999999999999999999988865566666666778888889999999999999999999887643221111
Q ss_pred cCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccce
Q 011711 232 LGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLA 309 (479)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~ 309 (479)
. +. --..|...|++++|+++ .+++|...|+|.+-.+..... ..-..
T Consensus 116 ~---------------t~----------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~-~~~~~ 163 (726)
T KOG3621|consen 116 V---------------TP----------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQA-FLSKS 163 (726)
T ss_pred e---------------cc----------------ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhh-hcccc
Confidence 0 00 01127889999999999 999999999999988877311 01123
Q ss_pred eeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCC
Q 011711 310 ALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDT 345 (479)
Q Consensus 310 ~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~ 345 (479)
+.+....++|.-|.....+|++++.-..+ +++++.
T Consensus 164 q~il~~ds~IVQlD~~q~~LLVStl~r~~-Lc~tE~ 198 (726)
T KOG3621|consen 164 QEILSEDSEIVQLDYLQSYLLVSTLTRCI-LCQTEA 198 (726)
T ss_pred ceeeccCcceEEeecccceehHhhhhhhh-eeecch
Confidence 33444567777777776666665554433 455543
No 316
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=0.0045 Score=56.68 Aligned_cols=260 Identities=15% Similarity=0.173 Sum_probs=148.6
Q ss_pred CCcEEEEECCCCc----eEEEEecCCc--eeEEEeCCCEEEEE----cCCeEEEEEcCC--CceEEec---CCCccEEEE
Q 011711 213 DGTVQLWDCHTGQ----SASVINLGAE--VGSLICEGPWVFVG----MPNVVKAWHIES--SAEFSLD---GPVGEVYSM 277 (479)
Q Consensus 213 Dg~v~vwd~~~~~----~~~~~~~~~~--~~~~~~~~~~l~~~----~~~~i~v~~~~~--~~~~~~~---~~~~~v~~~ 277 (479)
++-|.+|++.+.+ .......... ...+..+++.|.+. ..+.|..|.++. +....+. .....-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4679999987432 2222222222 23344567677764 357788887775 3432111 112222667
Q ss_pred EEcCC--EEEEE-eCCCcEEEEEccCCCCCcccceeeecCCCCC----------eEEEEEc--CCEEEEEeC-CCeEEEE
Q 011711 278 VVANE--MLFAG-AQDGNILVWKGIPNTQNPFQLAALLKGHTRP----------VTCLAVG--GKRLYSGSM-DNTIRVW 341 (479)
Q Consensus 278 ~~~~~--~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~----------i~~l~~~--~~~l~sgs~-dg~I~iw 341 (479)
+++++ +++++ ...|.|.++-++.... .........|.++ +.+..++ +++|++... -..|.+|
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~--l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGS--LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCc--cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 77766 55554 4568999999876422 1222222334433 6666665 778877653 3479999
Q ss_pred ECCCCcEEEEEe---CCCCCcEEEEEc--CCEEEEEeC-CCeEEEEEcCCC-cceEEecccc---C--ccceEEEeeeeC
Q 011711 342 DLDTLEAVMTLN---GHTDAPMSLLCW--DQYLLSCSL-DNTIKVWIMTEE-GNLEVAYTHN---E--DHGVLALGGLND 409 (479)
Q Consensus 342 d~~~~~~~~~~~---~h~~~v~~~~~~--~~~l~s~s~-dg~i~iwd~~~~-~~~~~~~~~~---~--~~~~~~~~~~~~ 409 (479)
++..+++...-. ........+.|+ +++.....+ +++|.+|..+.. ..+..+.... . .....+..+..+
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 999776543221 223345667776 666665554 899999998874 3333333211 1 111122233346
Q ss_pred CCCCcEEEEEeCCCeEEEeecCCCce-eeee---ec-cCceEEEEECCCc-eEEE-EcCCCcEEEEEeccCC
Q 011711 410 PDGNPVLICSCNDDSVHLYELPSFME-RGRI---FS-RREVRVIETGPDG-LFFT-GDGTGMLSVWKILAKP 474 (479)
Q Consensus 410 ~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~---~~-~~~v~~l~~s~~g-~l~s-g~~dg~v~vw~~~~~~ 474 (479)
++|+.+.++--....|-+|.+....- +... .. ....+...++++| +|++ .=.+..|.+|.++...
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 99995555544456788888765322 2221 12 3348999999999 5554 4456689999987643
No 317
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.21 E-value=0.00014 Score=71.64 Aligned_cols=295 Identities=13% Similarity=0.118 Sum_probs=164.6
Q ss_pred CCCCCccc--ccCCCCCCCCCCCCCCCCCC-CCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeee
Q 011711 71 RNPCRFAH--TESQTLPVSNHKKSPPSYNC-PKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTL 147 (479)
Q Consensus 71 ~~p~~~l~--~~~p~~~~~gh~~~i~~~~~-s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (479)
|.+||++- ..+|...+++.......+.| ...++|++-|+.-|.+-++++.+...-.-+. .+
T Consensus 11 r~~~p~~~~l~~i~~~~~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~------~~---------- 74 (726)
T KOG3621|consen 11 REWAPLTEVLERIPALLQPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN------EG---------- 74 (726)
T ss_pred hhccchhhhhhhhhhhhccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccc------cC----------
Confidence 46666542 23355555555444444444 8999999999999999999876654311110 01
Q ss_pred eecCC-CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEE----E-ecccccEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 011711 148 ERTTP-KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAK----L-EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC 221 (479)
Q Consensus 148 ~~~~~-~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~----~-~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~ 221 (479)
++.. ...|.+.....+++|+..|.|.++-+..+...-.. + +.|...|++++|++++..+++|...|.|..-.+
T Consensus 75 -~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 75 -ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred -ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence 1111 24455566667788889999999998765222222 1 237789999999999999999999999999988
Q ss_pred CCC-----ceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEe--cCCCc--cEEEEEEcC----C--EEEE
Q 011711 222 HTG-----QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL--DGPVG--EVYSMVVAN----E--MLFA 286 (479)
Q Consensus 222 ~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~--~~~~~--~v~~~~~~~----~--~l~~ 286 (479)
.+. .....+....++..+..-..++.++.--.-.+++.+.+..... +.-.+ ..-++.+.+ + .|++
T Consensus 154 ~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyc 233 (726)
T KOG3621|consen 154 DSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYC 233 (726)
T ss_pred chhhhhccccceeeccCcceEEeecccceehHhhhhhhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEE
Confidence 772 1223344556666666555555554443344444444332111 01111 111222221 1 4444
Q ss_pred EeCCCcEEEEEccCCC---------------CCcccceee-----------ecCCCCCeEEEEEcCCEEEEEeCCCeEEE
Q 011711 287 GAQDGNILVWKGIPNT---------------QNPFQLAAL-----------LKGHTRPVTCLAVGGKRLYSGSMDNTIRV 340 (479)
Q Consensus 287 g~~dg~i~iwd~~~~~---------------~~~~~~~~~-----------~~~h~~~i~~l~~~~~~l~sgs~dg~I~i 340 (479)
+-.. .++|..+-.. ..+...... -..|-+...+...++..+++-+.-| |+|
T Consensus 234 aRPG--~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv 310 (726)
T KOG3621|consen 234 ARPG--LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYV 310 (726)
T ss_pred ecCC--CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEE
Confidence 4333 3344332110 000000111 0112222333334455555555545 999
Q ss_pred EECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCC
Q 011711 341 WDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEE 386 (479)
Q Consensus 341 wd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~ 386 (479)
+|.++.+.+.-.+ ....|..++..++-|+.--.|+.+++..+.+.
T Consensus 311 ~d~~~~~v~l~se-~~~DI~dVs~~~neiFvL~~d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 311 FDSNNSQVYLWSE-GGHDILDVSHCGNEIFVLNLDRGLKVESVASR 355 (726)
T ss_pred EEeccceEEEeec-CCCceeEEeecCceEEEEecCCceeEEEeehh
Confidence 9988766543332 33457788888888888788887777776543
No 318
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.19 E-value=0.0043 Score=62.72 Aligned_cols=184 Identities=13% Similarity=0.083 Sum_probs=112.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecCCc--eeE-----------EEeCCCEEEEEcCCeEEEEEcCCCceEEecCC
Q 011711 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLGAE--VGS-----------LICEGPWVFVGMPNVVKAWHIESSAEFSLDGP 270 (479)
Q Consensus 204 ~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~--~~~-----------~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~ 270 (479)
+..++.++.++.|.-.|..+|+.+..+..... ... ...++.+++...++.+..+|.++++.+-....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 55777788888999999999999888765422 110 12345666667899999999999988632221
Q ss_pred ---C--ccEE-EEEEcCCEEEEEeC------CCcEEEEEccCCCCCcccceeeecC------------------------
Q 011711 271 ---V--GEVY-SMVVANEMLFAGAQ------DGNILVWKGIPNTQNPFQLAALLKG------------------------ 314 (479)
Q Consensus 271 ---~--~~v~-~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~------------------------ 314 (479)
. ..+. +-.+..+.++++.. +|.|..+|..+++.. ++... ...
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l-W~~~~-~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV-WRRYT-VPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee-EeccC-cCCCcccccccccccccccccCCCCCC
Confidence 1 1121 22234556666653 688999998887542 11000 000
Q ss_pred ---C-CCCeE-EEEEc--CCEEEEEeC-----CC-----------eEEEEECCCCcEEEEEeCCCCCc-----------E
Q 011711 315 ---H-TRPVT-CLAVG--GKRLYSGSM-----DN-----------TIRVWDLDTLEAVMTLNGHTDAP-----------M 360 (479)
Q Consensus 315 ---h-~~~i~-~l~~~--~~~l~sgs~-----dg-----------~I~iwd~~~~~~~~~~~~h~~~v-----------~ 360 (479)
+ ...+. .++++ .++++.+.. ++ .|.-.|++|++....++.....+ .
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 0 01111 23444 445555541 12 67888999999988887432211 1
Q ss_pred EEEEcCC---EEEEEeCCCeEEEEEcCCCcce
Q 011711 361 SLLCWDQ---YLLSCSLDNTIKVWIMTEEGNL 389 (479)
Q Consensus 361 ~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~ 389 (479)
.+...++ .++.+..+|.+.+.|.++++.+
T Consensus 307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2222444 7889999999999999988764
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00063 Score=68.69 Aligned_cols=212 Identities=14% Similarity=0.176 Sum_probs=133.7
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEeccccc-EEEEEeCCCCCEEEEEeCCCc-----EEEEECCCCce
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKA-VSGIALPLRSDKLYSGSRDGT-----VQLWDCHTGQS 226 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~-V~~l~~s~~~~~l~s~s~Dg~-----v~vwd~~~~~~ 226 (479)
...|+....+.++-|+.+|.|.+.+ .+++.++.++++... |..+....+..+|++.+.|+. |+|||++.-+.
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 6789999999999999998776665 566777889999888 555555555578999888764 89999875421
Q ss_pred EEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCC
Q 011711 227 ASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQN 304 (479)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~ 304 (479)
-.. ..++ +..+++... ......++.+++++.+ .+|+|-.+|.|..+.-+--...
T Consensus 105 n~s------P~c~------------~~~ri~~~~------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr 160 (933)
T KOG2114|consen 105 NNS------PQCL------------YEHRIFTIK------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR 160 (933)
T ss_pred CCC------ccee------------eeeeeeccC------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcc
Confidence 100 0000 001111111 1123556778888877 8999999999999964322111
Q ss_pred cccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCCCcEEEEEc-CCE-EEEEeCCCeEE
Q 011711 305 PFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA-VMTLNGHTDAPMSLLCW-DQY-LLSCSLDNTIK 379 (479)
Q Consensus 305 ~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~v~~~~~~-~~~-l~s~s~dg~i~ 379 (479)
.. ..........+|+.+.+. +..++-...-..|.+|.+....+ ...+..|.....|.+++ +.. +++++ +..+.
T Consensus 161 gs-r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~ 238 (933)
T KOG2114|consen 161 GS-RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLY 238 (933)
T ss_pred cc-ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEE
Confidence 11 122223346799999995 54423333446799999884442 44567777778888877 333 44433 45799
Q ss_pred EEEcCCCcceEEe
Q 011711 380 VWIMTEEGNLEVA 392 (479)
Q Consensus 380 iwd~~~~~~~~~~ 392 (479)
+|+....+....+
T Consensus 239 fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 239 FYDSDGRGPCFAF 251 (933)
T ss_pred EEcCCCcceeeee
Confidence 9998765544333
No 320
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.16 E-value=0.0034 Score=61.27 Aligned_cols=92 Identities=17% Similarity=0.254 Sum_probs=64.3
Q ss_pred EEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEE
Q 011711 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFF 457 (479)
Q Consensus 379 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~ 457 (479)
.+|++...+ ++......-+...-..++..+|+.+ .++.|+.||.|.+||...+..... ...-.++.++|+|+| .++
T Consensus 239 ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 239 CIYECSRNK-LQRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEeecCc-eeEEEEEEEecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEE
Confidence 455554332 2332222223333345556678887 788899999999999977644322 445668999999999 999
Q ss_pred EEcCCCcEEEEEeccC
Q 011711 458 TGDGTGMLSVWKILAK 473 (479)
Q Consensus 458 sg~~dg~v~vw~~~~~ 473 (479)
+|+.-|.+.+||+.-.
T Consensus 316 V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 316 VGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCceEEEEEeecC
Confidence 9999999999998654
No 321
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.16 E-value=0.0034 Score=54.87 Aligned_cols=261 Identities=15% Similarity=0.163 Sum_probs=134.8
Q ss_pred cCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeE-
Q 011711 160 LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS- 238 (479)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~- 238 (479)
.++.++-|...+.+.+-+.+++ .....+..-..-=..-...+++..+..++.|++...-|..+..++...+.+..+..
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tG-s~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTG-SQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecch-hheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence 4456889999999999999999 55665554322112223468899999999999999999999999888776554332
Q ss_pred --EEe-CCCEEEEEcCCeEEEEEcCCCce--EEecCCCccEEEE-EEcCCEEEEEeCCCcEE--------EEEccCCCCC
Q 011711 239 --LIC-EGPWVFVGMPNVVKAWHIESSAE--FSLDGPVGEVYSM-VVANEMLFAGAQDGNIL--------VWKGIPNTQN 304 (479)
Q Consensus 239 --~~~-~~~~l~~~~~~~i~v~~~~~~~~--~~~~~~~~~v~~~-~~~~~~l~~g~~dg~i~--------iwd~~~~~~~ 304 (479)
+.. ++.+.++...|.+..-+.+.... +-.....+++.+- .+-...+..++-||.+. +|...++..
T Consensus 141 P~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~Gp- 219 (354)
T KOG4649|consen 141 PVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKGP- 219 (354)
T ss_pred ceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCCc-
Confidence 222 45555666666655555544421 1111112222221 11112333334444444 454444321
Q ss_pred cccceeeecCCCCCe-EEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc------CCEEEEEeCCC
Q 011711 305 PFQLAALLKGHTRPV-TCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW------DQYLLSCSLDN 376 (479)
Q Consensus 305 ~~~~~~~~~~h~~~i-~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~------~~~l~s~s~dg 376 (479)
+..-.....+- ..+.+. .+-+...-....-.+|..+++...+.+.... ..+.+. ++++..++.||
T Consensus 220 ----If~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~s~dg 292 (354)
T KOG4649|consen 220 ----IFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK---LRFDLHSPGISYPKLLRRSSGDG 292 (354)
T ss_pred ----eecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc---cceeccCCCCcchhhhhhhcCCC
Confidence 11111111111 222222 3333333333334567666664443332111 111111 45677888899
Q ss_pred eEEEEEcCCCcceEEeccccCccceEE---E--eeeeCC---CCCcEEEEEeCCCeEEEeecCCC
Q 011711 377 TIKVWIMTEEGNLEVAYTHNEDHGVLA---L--GGLNDP---DGNPVLICSCNDDSVHLYELPSF 433 (479)
Q Consensus 377 ~i~iwd~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~---~~~~~l~s~~~dg~v~iwd~~~~ 433 (479)
.+.|.-.+.. +.....+..+...+. + ....+| +| .|+.|+.|..|+-||+.+.
T Consensus 293 kv~il~~~~s--l~~~~s~~g~lq~~~~~el~~eIFsSPvii~g--rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 293 KVMILMTSKS--LAEISSNGGELQNLEAIELSNEIFSSPVIIDG--RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred cEEEEEeccc--ccccccCCCccceEEEeecCcccccCCeEEcc--EEEEEEccCeEEEEecccc
Confidence 8888743321 222222222211111 0 001122 34 3667889999999999764
No 322
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.14 E-value=0.006 Score=55.43 Aligned_cols=211 Identities=17% Similarity=0.186 Sum_probs=126.5
Q ss_pred EEEeCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe-CCCEEEEEcCCeEEEEEcCCCceEEec-----C
Q 011711 197 GIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-EGPWVFVGMPNVVKAWHIESSAEFSLD-----G 269 (479)
Q Consensus 197 ~l~~s~-~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~v~~~~~~~~~~~~-----~ 269 (479)
+.+|.+ ++.++++--..+.|..|+..+++... +....+...... .+..++++..+.+.++|+.+++...+. .
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGG 82 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTC
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCC
Confidence 567877 66677776678999999998775543 454445554444 445555555566666799888654321 1
Q ss_pred -CCccEEEEEEcCC-EEEEEeC-C--------CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEE-EEeCC
Q 011711 270 -PVGEVYSMVVANE-MLFAGAQ-D--------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLY-SGSMD 335 (479)
Q Consensus 270 -~~~~v~~~~~~~~-~l~~g~~-d--------g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~-sgs~d 335 (479)
.....+.++++++ .|..+.. . |.|..++.. ++ .......-...+.|+|+ ++.|+ +-+..
T Consensus 83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK------VTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE------EEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce------EEEEecCcccccceEECCcchheeeccccc
Confidence 4567888999888 4444432 2 457777765 22 12222223456788886 66554 66788
Q ss_pred CeEEEEECCCCcE-------EEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEee
Q 011711 336 NTIRVWDLDTLEA-------VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGG 406 (479)
Q Consensus 336 g~I~iwd~~~~~~-------~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 406 (479)
+.|..+++..... ...+....+..-.++++ |++.++....+.|.++|.+ ++.+..+.........+++.
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg- 233 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG- 233 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE-
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE-
Confidence 8999999863221 12222222235567776 6777777778999999987 66555555543444444442
Q ss_pred eeCCCCCcEEEEE
Q 011711 407 LNDPDGNPVLICS 419 (479)
Q Consensus 407 ~~~~~~~~~l~s~ 419 (479)
-++.+.++++.
T Consensus 234 --g~~~~~L~vTt 244 (246)
T PF08450_consen 234 --GPDGKTLYVTT 244 (246)
T ss_dssp --STTSSEEEEEE
T ss_pred --CCCCCEEEEEe
Confidence 36666566654
No 323
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.13 E-value=9.6e-06 Score=49.97 Aligned_cols=35 Identities=43% Similarity=0.730 Sum_probs=29.2
Q ss_pred ceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEE
Q 011711 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWD 342 (479)
Q Consensus 308 ~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd 342 (479)
+...+.+|..+|++++++ +++|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467788888888888886 78888888888888887
No 324
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.13 E-value=0.0067 Score=59.56 Aligned_cols=202 Identities=11% Similarity=0.013 Sum_probs=111.9
Q ss_pred eEEEEEcCCCceEEecCCCccEEEEEEcCC--E-EEEEeC---CCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-
Q 011711 253 VVKAWHIESSAEFSLDGPVGEVYSMVVANE--M-LFAGAQ---DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG- 325 (479)
Q Consensus 253 ~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~-l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~- 325 (479)
.|.+-|........+.... ......|+|+ . ++..+. +..|+++|+.++.. ..+....+......|+
T Consensus 170 ~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~------~~lt~~~g~~~~~~~SP 242 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK------EKIASSQGMLVVSDVSK 242 (419)
T ss_pred eEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE------EEEecCCCcEEeeEECC
Confidence 4555555555444333333 6778888887 3 554333 35688899877653 2222234444455665
Q ss_pred -CCEEE-EEeCC--CeEEEEECCCCcEEEEEeCCCCCcE--EEEEcCCEEEEEeC-CC--eEEEEEcCCCcceEEecccc
Q 011711 326 -GKRLY-SGSMD--NTIRVWDLDTLEAVMTLNGHTDAPM--SLLCWDQYLLSCSL-DN--TIKVWIMTEEGNLEVAYTHN 396 (479)
Q Consensus 326 -~~~l~-sgs~d--g~I~iwd~~~~~~~~~~~~h~~~v~--~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~ 396 (479)
|+.++ +.+.+ ..|.++|+.+++. ..+..+..... ....+|+.|+..+. .+ .|.+.|+.+++..+.... .
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g 320 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-G 320 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-C
Confidence 65554 44433 5688889888764 33443332222 33334776665553 33 677778876654333322 1
Q ss_pred CccceEEEeeeeCCCCCcEEEEEeCC--------CeEEEeecCCCceeeeeeccCceEEEEECCCc-eE-EEEcCCCcEE
Q 011711 397 EDHGVLALGGLNDPDGNPVLICSCND--------DSVHLYELPSFMERGRIFSRREVRVIETGPDG-LF-FTGDGTGMLS 466 (479)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~s~~~d--------g~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l-~sg~~dg~v~ 466 (479)
. .. ..++|+|+.++++...+ ..|.+.|+.+++.. .+..........|+||| .| ++....+.-.
T Consensus 321 ~--~~----~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 321 K--NN----SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKYLGNQSA 393 (419)
T ss_pred C--cC----ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEccCCcEE
Confidence 1 11 24679999776666443 36888898877653 33333334468999999 44 3433334433
Q ss_pred EEEe
Q 011711 467 VWKI 470 (479)
Q Consensus 467 vw~~ 470 (479)
++-+
T Consensus 394 L~~~ 397 (419)
T PRK04043 394 LGII 397 (419)
T ss_pred EEEE
Confidence 4433
No 325
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.9e-05 Score=72.25 Aligned_cols=198 Identities=13% Similarity=0.105 Sum_probs=133.0
Q ss_pred CCccEEEEEEcC-CEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeC-CCeEEEEECCC
Q 011711 270 PVGEVYSMVVAN-EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM-DNTIRVWDLDT 345 (479)
Q Consensus 270 ~~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~-dg~I~iwd~~~ 345 (479)
|...|+.+.... +++.+++.||.++.|.-..-.. .+.+..+..|...|.+++.+ +-.+.|.+. |..++++|+.+
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isG--vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISG--VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccc--eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 666677666654 4999999999999997543111 44566677888888888776 777888777 99999999987
Q ss_pred CcEEEEEe--CCCCCcEEEEEcC----CEEEEEeCCCeEEEEEcCCCcceE--EeccccCccceEEEeeeeCCCCCcEEE
Q 011711 346 LEAVMTLN--GHTDAPMSLLCWD----QYLLSCSLDNTIKVWIMTEEGNLE--VAYTHNEDHGVLALGGLNDPDGNPVLI 417 (479)
Q Consensus 346 ~~~~~~~~--~h~~~v~~~~~~~----~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ 417 (479)
...+.-++ .-...+..+...| ..-++.-.++.|.++|-....+.. ....|..++..+.. .+-+. .++
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y----~qa~D-s~v 160 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY----NQAGD-SAV 160 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe----ecccc-cee
Confidence 66543332 2222222222224 223344458899999976554322 22234444444444 36666 677
Q ss_pred EEeCCCeEEEeecCC------Cceeeeee----------ccCceEEEEECCCc-eEEEEcCCCcEEEEEeccCC
Q 011711 418 CSCNDDSVHLYELPS------FMERGRIF----------SRREVRVIETGPDG-LFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 418 s~~~dg~v~iwd~~~------~~~~~~~~----------~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~~ 474 (479)
+....|.|.-|..+. .+....+. .+....++.|+|+| .+.+-+.|..|+++.+..+.
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 777789999998873 11222222 26779999999999 99999999999999998765
No 326
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.07 E-value=0.0029 Score=60.07 Aligned_cols=173 Identities=19% Similarity=0.181 Sum_probs=106.1
Q ss_pred CcEEEEEccCCCC--CcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCc-EEEEEe-CCCCCcEEEEEcC
Q 011711 291 GNILVWKGIPNTQ--NPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLE-AVMTLN-GHTDAPMSLLCWD 366 (479)
Q Consensus 291 g~i~iwd~~~~~~--~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~-~h~~~v~~~~~~~ 366 (479)
|.|.++++..... ...+.+.. ....++|++++.-++.++++. ++.|.+|++...+ ....-. .....+.++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~ 139 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK 139 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET
T ss_pred cEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccc
Confidence 8899999988411 11333333 235788999988766655554 5899999998887 443332 2334678888889
Q ss_pred CEEEEEeCCCeEEEEEcCCC-cceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC-------Cc----
Q 011711 367 QYLLSCSLDNTIKVWIMTEE-GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS-------FM---- 434 (479)
Q Consensus 367 ~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-------~~---- 434 (479)
++++.|.....+.++..+.. ..+..+..........+..+. ++++ .++++..+|.+.++..+. +.
T Consensus 140 ~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l--~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~ 216 (321)
T PF03178_consen 140 NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL--VDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLE 216 (321)
T ss_dssp TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE---SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEE
T ss_pred cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe--cCCc-EEEEEcCCCeEEEEEECCCCcccccccccce
Confidence 99999999888998866543 334444443334333443332 3455 788899999999998763 11
Q ss_pred eeeeeeccCceEEE---EECCC--c-------eEEEEcCCCcEEEE
Q 011711 435 ERGRIFSRREVRVI---ETGPD--G-------LFFTGDGTGMLSVW 468 (479)
Q Consensus 435 ~~~~~~~~~~v~~l---~~s~~--g-------~l~sg~~dg~v~vw 468 (479)
....+.....|+++ .+.|. + .++.++.+|.|.+.
T Consensus 217 ~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 217 RISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 22333347778888 65552 2 38888899999843
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=6.6e-06 Score=82.46 Aligned_cols=186 Identities=12% Similarity=0.148 Sum_probs=123.4
Q ss_pred EecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC--eEE
Q 011711 266 SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN--TIR 339 (479)
Q Consensus 266 ~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg--~I~ 339 (479)
.+..+....+|++|+.+ .|++|+..|.|++|++.++.. .....+|..+|+-+..+ |..+++.+.-. -..
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-----e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-----EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-----cccccccccccccccccCCcceeeeeccccCchHH
Confidence 34567788899999876 999999999999999999864 56678999999999886 66666554333 467
Q ss_pred EEECCC-CcEEEEEeCCCCCcEEEEEcC--CEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEE
Q 011711 340 VWDLDT-LEAVMTLNGHTDAPMSLLCWD--QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVL 416 (479)
Q Consensus 340 iwd~~~-~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 416 (479)
+|++.+ +...+++... .++.|.+ .+-+.|.......+||+.+...+..+.........-.-...|+|+.. ++
T Consensus 1171 LW~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LI 1245 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LI 1245 (1516)
T ss_pred HhccccccCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eE
Confidence 899865 4555555432 3444442 22333444456889999998877664433222111123344578887 44
Q ss_pred EEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 417 ICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 417 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
. +|| .+||++..+.+..+..-..--.-.|+|.| .++.-+ .|||+.
T Consensus 1246 l---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~R 1291 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMR 1291 (1516)
T ss_pred e---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhH
Confidence 4 466 58999888777777654444455788888 666554 356654
No 328
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.99 E-value=0.0077 Score=55.03 Aligned_cols=202 Identities=14% Similarity=0.151 Sum_probs=119.2
Q ss_pred eEEEeecCCCceeeEEEecccccEE--EEEeCCCCCEEEEEeC-----CCcEEEEECC-CCceEEEEecCC---ceeEEE
Q 011711 172 FWHSWFCGEGFTMLAKLEGHKKAVS--GIALPLRSDKLYSGSR-----DGTVQLWDCH-TGQSASVINLGA---EVGSLI 240 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H~~~V~--~l~~s~~~~~l~s~s~-----Dg~v~vwd~~-~~~~~~~~~~~~---~~~~~~ 240 (479)
...+||..++ +..+.+....+.-. --.|++||++|++.=. .|.|-|||.. +.+.+.++.... .-..+.
T Consensus 29 ~~~v~D~~~g-~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~ 107 (305)
T PF07433_consen 29 FALVFDCRTG-QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM 107 (305)
T ss_pred EEEEEEcCCC-ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc
Confidence 5667888777 44444332222111 2479999999999744 4899999998 566777776432 234456
Q ss_pred eCCCEEEEEcCC-------------------eEEEEEcCCCceEE---e--cCCCccEEEEEEcCC-EEEEEeC-CCc--
Q 011711 241 CEGPWVFVGMPN-------------------VVKAWHIESSAEFS---L--DGPVGEVYSMVVANE-MLFAGAQ-DGN-- 292 (479)
Q Consensus 241 ~~~~~l~~~~~~-------------------~i~v~~~~~~~~~~---~--~~~~~~v~~~~~~~~-~l~~g~~-dg~-- 292 (479)
++++.|++++.| .+...|..+++.+. + ..|...+.-+++.++ .++.|.. .|.
T Consensus 108 pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~ 187 (305)
T PF07433_consen 108 PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG 187 (305)
T ss_pred CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC
Confidence 688766665332 45566677777543 3 346677888888877 4444432 221
Q ss_pred -----EEEEEccCCCCCccc-ceeeecCCCCCeEEEEEc--CCEE-EEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEE
Q 011711 293 -----ILVWKGIPNTQNPFQ-LAALLKGHTRPVTCLAVG--GKRL-YSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLL 363 (479)
Q Consensus 293 -----i~iwd~~~~~~~~~~-~~~~~~~h~~~i~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~ 363 (479)
|.+++....-. .+. .......-...|-+|+++ +..+ +|+=..+.+.+||..+++.+....... +..++
T Consensus 188 ~~~PLva~~~~g~~~~-~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D--~cGva 264 (305)
T PF07433_consen 188 DAPPLVALHRRGGALR-LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD--ACGVA 264 (305)
T ss_pred ccCCeEEEEcCCCcce-eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc--eeeee
Confidence 33333222100 000 001122335678899996 5555 555577899999999999987766433 45566
Q ss_pred Ec-CCEEEEEeCCCeE
Q 011711 364 CW-DQYLLSCSLDNTI 378 (479)
Q Consensus 364 ~~-~~~l~s~s~dg~i 378 (479)
.. +.++++.+ .|.+
T Consensus 265 ~~~~~f~~ssG-~G~~ 279 (305)
T PF07433_consen 265 PTDDGFLVSSG-QGQL 279 (305)
T ss_pred ecCCceEEeCC-CccE
Confidence 65 34555544 4443
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=4.1e-06 Score=83.91 Aligned_cols=212 Identities=15% Similarity=0.169 Sum_probs=138.0
Q ss_pred CceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcC
Q 011711 181 GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIE 260 (479)
Q Consensus 181 ~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~ 260 (479)
.++..+.|..|+..-+|++|+-+.++|+.|+..|.|+++++.+|.......
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n----------------------------- 1140 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN----------------------------- 1140 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-----------------------------
Confidence 356677888999999999999999999999999999999999998665443
Q ss_pred CCceEEecCCCccEEEEEEcCC---EEEEEeCCC-cEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeC
Q 011711 261 SSAEFSLDGPVGEVYSMVVANE---MLFAGAQDG-NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM 334 (479)
Q Consensus 261 ~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~ 334 (479)
.|...|+-+..+.+ +|.+++... -..+|++.+. ..+...+. .-.++.|+ -..-+.|..
T Consensus 1141 --------cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~----~~~~Hsf~----ed~~vkFsn~~q~r~~gt~ 1204 (1516)
T KOG1832|consen 1141 --------CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST----GGPRHSFD----EDKAVKFSNSLQFRALGTE 1204 (1516)
T ss_pred --------ccccccccccccCCcceeeeeccccCchHHHhccccc----cCcccccc----ccceeehhhhHHHHHhccc
Confidence 57777777776655 444444444 5778997663 22333333 34567776 233345555
Q ss_pred CCeEEEEECCCCcEEEEEeCCC----CCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeee
Q 011711 335 DNTIRVWDLDTLEAVMTLNGHT----DAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLN 408 (479)
Q Consensus 335 dg~I~iwd~~~~~~~~~~~~h~----~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (479)
-....+||++++.++.++-... -.-....|+ +++++ .|| .+||++..+.+..+.... ......|
T Consensus 1205 ~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-----~~~~G~F 1274 (1516)
T KOG1832|consen 1205 ADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT-----DYGGGGF 1274 (1516)
T ss_pred ccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhe-----ecccccc
Confidence 5678999999998877743111 111223333 33333 344 479998876555544433 3445556
Q ss_pred CCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc
Q 011711 409 DPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG 454 (479)
Q Consensus 409 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g 454 (479)
+|.|..+++-. .|||+++++.+.....-+ -..+.|+..|
T Consensus 1275 HP~g~eVIINS------EIwD~RTF~lLh~VP~Ld-qc~VtFNstG 1313 (1516)
T KOG1832|consen 1275 HPSGNEVIINS------EIWDMRTFKLLHSVPSLD-QCAVTFNSTG 1313 (1516)
T ss_pred cCCCceEEeec------hhhhhHHHHHHhcCcccc-ceEEEeccCc
Confidence 79998666533 699999988776654321 2345555555
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.85 E-value=0.0077 Score=58.25 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=93.1
Q ss_pred cceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEe--C------CCCCcEEEEEc-----C-----C
Q 011711 307 QLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLN--G------HTDAPMSLLCW-----D-----Q 367 (479)
Q Consensus 307 ~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~------h~~~v~~~~~~-----~-----~ 367 (479)
.+...+....++|++++.+ =.+++.|+.+|.+.|.|+|....+..-. . ....+.++.|. + -
T Consensus 77 ~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred CchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 3444555668899999996 6799999999999999999988887632 1 22346666664 1 3
Q ss_pred EEEEEeCCCeEEEEEcCC--CcceE-Eeccc--cCccceEEEeeeeCCCC-------------------CcEEEEEeCCC
Q 011711 368 YLLSCSLDNTIKVWIMTE--EGNLE-VAYTH--NEDHGVLALGGLNDPDG-------------------NPVLICSCNDD 423 (479)
Q Consensus 368 ~l~s~s~dg~i~iwd~~~--~~~~~-~~~~~--~~~~~~~~~~~~~~~~~-------------------~~~l~s~~~dg 423 (479)
.+++|...|.+.+|.+.- +.... .+... ......+.+.......| +.++++ ..+.
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~ 235 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSES 235 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SS
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-Eccc
Confidence 788999999999998752 12111 11110 11112222222211111 113333 3578
Q ss_pred eEEEeecCCCceeeeeecc-CceEEEEEC-----CCc-eEEEEcCCCcEEEEEecc
Q 011711 424 SVHLYELPSFMERGRIFSR-REVRVIETG-----PDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 424 ~v~iwd~~~~~~~~~~~~~-~~v~~l~~s-----~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
.++++...+.+...+.... -....+.+- ..+ .|++-..+|.|+++.+..
T Consensus 236 ~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp EEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred ceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 8999999988777666632 122333442 244 888888999999999865
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.013 Score=59.62 Aligned_cols=201 Identities=15% Similarity=0.149 Sum_probs=113.9
Q ss_pred cEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCcc
Q 011711 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGE 273 (479)
Q Consensus 194 ~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~ 273 (479)
.|++ |++.+..+|.|+.||.|.+.+-. -+....+. .+...
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fq-------------------------------------a~~~s 66 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQ-------------------------------------AYEQS 66 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehhe-------------------------------------ecchh
Confidence 4554 45788899999999988877632 11112221 11111
Q ss_pred -EEEEEEcCC--EEEEEeCCC-----cEEEEEccCCCCCc-ccce--eeecC-----CCCCeEEEEEc--CCEEEEEeCC
Q 011711 274 -VYSMVVANE--MLFAGAQDG-----NILVWKGIPNTQNP-FQLA--ALLKG-----HTRPVTCLAVG--GKRLYSGSMD 335 (479)
Q Consensus 274 -v~~~~~~~~--~l~~g~~dg-----~i~iwd~~~~~~~~-~~~~--~~~~~-----h~~~i~~l~~~--~~~l~sgs~d 335 (479)
|..+-..++ .|++.++|+ .+++|++...+... .++. ..+.. ...++.+++.+ -+.+++|-.|
T Consensus 67 iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~n 146 (933)
T KOG2114|consen 67 IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTN 146 (933)
T ss_pred hhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecC
Confidence 333333333 566655554 48899987653322 2222 11122 35577888886 5678999999
Q ss_pred CeEEEEECC--C--CcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcc-eEEeccccCccceEEEeeee
Q 011711 336 NTIRVWDLD--T--LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN-LEVAYTHNEDHGVLALGGLN 408 (479)
Q Consensus 336 g~I~iwd~~--~--~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 408 (479)
|.|..+.-+ . +....-......+|+.+.+. +..++-......|.+|.+....+ ...+..+.....+.++
T Consensus 147 G~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~---- 222 (933)
T KOG2114|consen 147 GLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSF---- 222 (933)
T ss_pred cEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeec----
Confidence 999988432 1 22122222345678988887 44434444456799999985542 2224444444444444
Q ss_pred CCCCCcEEEEEeCCCeEEEeecCCCceeeeee
Q 011711 409 DPDGNPVLICSCNDDSVHLYELPSFMERGRIF 440 (479)
Q Consensus 409 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 440 (479)
.++.+-+++++ +..+.+|+.+.......+.
T Consensus 223 -~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 223 -SDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred -CCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 33333344443 5679999998766655555
No 332
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.81 E-value=0.024 Score=53.75 Aligned_cols=207 Identities=14% Similarity=0.107 Sum_probs=129.1
Q ss_pred eEEEeecCCCceeeEEEecc-cccEE---EEEeCCC----CCEEEEEeC----------CCcEEEEECCCC-------ce
Q 011711 172 FWHSWFCGEGFTMLAKLEGH-KKAVS---GIALPLR----SDKLYSGSR----------DGTVQLWDCHTG-------QS 226 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H-~~~V~---~l~~s~~----~~~l~s~s~----------Dg~v~vwd~~~~-------~~ 226 (479)
.|++.|..+. +.+..+.-. ...++ .+.+..+ ..+|+.|+. .|.|.++++... +.
T Consensus 3 ~i~l~d~~~~-~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTF-EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTS-SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCC-eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 5677777655 444444322 22344 3444432 567777653 288999999884 33
Q ss_pred EEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCc-eEE--ecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCC
Q 011711 227 ASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSA-EFS--LDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQ 303 (479)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~-~~~--~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 303 (479)
+.......++.++..-+..++++.++.|.+|++...+ ... .......+.++...++++++|.....+.++.......
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE
T ss_pred EEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCC
Confidence 4455677888888887777999999999999999888 543 2233448889999999999999999999887655321
Q ss_pred CcccceeeecCCCCCeEEEEE--cCCEEEEEeCCCeEEEEECCC-------C--cEEEEEeCC-CCCcEEEEE---cC--
Q 011711 304 NPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIRVWDLDT-------L--EAVMTLNGH-TDAPMSLLC---WD-- 366 (479)
Q Consensus 304 ~~~~~~~~~~~h~~~i~~l~~--~~~~l~sgs~dg~I~iwd~~~-------~--~~~~~~~~h-~~~v~~~~~---~~-- 366 (479)
. +..+. -......++++.+ +++.++.+..+|.+.++.... + +......-| ...|+++.. ..
T Consensus 162 ~-l~~va-~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~ 239 (321)
T PF03178_consen 162 K-LILVA-RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRS 239 (321)
T ss_dssp --EEEEE-EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--S
T ss_pred E-EEEEE-ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecC
Confidence 1 22222 1223445677766 456999999999999997752 2 222222222 234555521 11
Q ss_pred --------CEEEEEeCCCeEEEE
Q 011711 367 --------QYLLSCSLDNTIKVW 381 (479)
Q Consensus 367 --------~~l~s~s~dg~i~iw 381 (479)
..++.++.+|.|.+.
T Consensus 240 ~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 240 GSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCcccccceEEEEecCCEEEEE
Confidence 147777788888744
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.78 E-value=0.0035 Score=62.66 Aligned_cols=100 Identities=11% Similarity=0.019 Sum_probs=72.6
Q ss_pred CCEEEEEeCCCeEEEEEcCC-----CcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCce-----
Q 011711 366 DQYLLSCSLDNTIKVWIMTE-----EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFME----- 435 (479)
Q Consensus 366 ~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----- 435 (479)
|++... .++.|.+.|..+ ......+.....+. .+.+ +|||+++++++..+++|.++|+.+.+.
T Consensus 288 GK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPH-GV~v----SPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 288 GKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPH-GVNT----SPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred CCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCcc-ceEE----CCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 555554 367899999987 33333343333333 3344 599998888888899999999988663
Q ss_pred -------eeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 436 -------RGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 436 -------~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
..+..........+|.++| .+.|--.|..|..|++..
T Consensus 361 ~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3333345556778999999 888888899999999876
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00072 Score=68.08 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=61.9
Q ss_pred CeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 011711 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT 223 (479)
Q Consensus 153 ~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~ 223 (479)
..+|.++..-.++.|-+-|.+.+|...+. +.......|..+|..+.||++|..|+|+..-|.|.+|....
T Consensus 63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 63 TSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhccChHHHHHhhccccceeEEEecCCc-eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 46888888888999999999999999887 55666677999999999999999999999999999998763
No 335
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.69 E-value=0.00012 Score=44.00 Aligned_cols=38 Identities=39% Similarity=0.707 Sum_probs=34.8
Q ss_pred eeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 011711 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWD 220 (479)
Q Consensus 183 ~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd 220 (479)
+++..+..|...|.+++|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 55677889999999999999999999999999999996
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.64 E-value=0.016 Score=56.77 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=57.6
Q ss_pred CCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECC
Q 011711 269 GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD 344 (479)
Q Consensus 269 ~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~ 344 (479)
.....+.+++++++ .++.|+.||.|.+||...+. .......-..+.++|+ |..+++|+..|.+.+||+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe-------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 46677888998877 99999999999999987653 2222334556789996 7899999999999999987
Q ss_pred CCcE
Q 011711 345 TLEA 348 (479)
Q Consensus 345 ~~~~ 348 (479)
-...
T Consensus 330 Lspi 333 (545)
T PF11768_consen 330 LSPI 333 (545)
T ss_pred cCcc
Confidence 5443
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.64 E-value=0.044 Score=58.16 Aligned_cols=183 Identities=11% Similarity=0.018 Sum_probs=110.1
Q ss_pred cCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEEC----CC------------
Q 011711 160 LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC----HT------------ 223 (479)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~----~~------------ 223 (479)
....++.+...|.|.+-|.++.. +....--.+.|.+++|+||++.++-.+.++++.+-+- -.
T Consensus 79 d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~s 156 (1265)
T KOG1920|consen 79 DTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKS 156 (1265)
T ss_pred ccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccccccccc
Confidence 34456666677777777877652 2222223678999999999999999999888876542 11
Q ss_pred -------CceEEEEec----------------------CCc--eeEEEeCCCEEEEE-----cC-CeEEEEEcCCCceE-
Q 011711 224 -------GQSASVINL----------------------GAE--VGSLICEGPWVFVG-----MP-NVVKAWHIESSAEF- 265 (479)
Q Consensus 224 -------~~~~~~~~~----------------------~~~--~~~~~~~~~~l~~~-----~~-~~i~v~~~~~~~~~- 265 (479)
|+....+.. ... ..+...+|.+++++ .+ ..|++||-+ +...
T Consensus 157 k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns 235 (1265)
T KOG1920|consen 157 KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS 235 (1265)
T ss_pred ccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc
Confidence 111111110 001 12223478888873 44 799999988 4332
Q ss_pred EecCCCccEEEEEEcCC--EEEEE---eCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEE---EeCC
Q 011711 266 SLDGPVGEVYSMVVANE--MLFAG---AQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYS---GSMD 335 (479)
Q Consensus 266 ~~~~~~~~v~~~~~~~~--~l~~g---~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~s---gs~d 335 (479)
......+.=.+++|-|. .+++- ..|+.|.+|.-+.-... +..........+|..++|+ +..|++ ....
T Consensus 236 ~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg--~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~ 313 (1265)
T KOG1920|consen 236 TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG--EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLEN 313 (1265)
T ss_pred ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc--ccccCCcccccchheeeecCCCCceeeeeccccc
Confidence 22233344456777775 55553 35667999985543221 1122233344458999997 667776 4455
Q ss_pred CeEEEEECCCCc
Q 011711 336 NTIRVWDLDTLE 347 (479)
Q Consensus 336 g~I~iwd~~~~~ 347 (479)
..|++|-+.+..
T Consensus 314 ~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 314 SLVQLWTTGNYH 325 (1265)
T ss_pred ceEEEEEecCeE
Confidence 569999987754
No 338
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.64 E-value=0.028 Score=59.55 Aligned_cols=225 Identities=12% Similarity=0.079 Sum_probs=121.6
Q ss_pred ceeEEEe---CCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccce
Q 011711 235 EVGSLIC---EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLA 309 (479)
Q Consensus 235 ~~~~~~~---~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~ 309 (479)
.+.++.+ .+.++++...|.|.+-|.++............|.+++|+++ .++..+..+++.+-+-. +.++
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~------f~~i 143 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD------FEPI 143 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc------ccch
Confidence 4445444 45566677888888889888887777777889999999998 77777777777765421 1111
Q ss_pred eeecC-----CCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEe----CC-C
Q 011711 310 ALLKG-----HTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS----LD-N 376 (479)
Q Consensus 310 ~~~~~-----h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s----~d-g 376 (479)
....- ..+....+-|. ...-+-|+ .|.....+....+.........+.-+++.|- |+++++.. .+ .
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hccccccccccccccceecccccceeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 11110 11122223332 11122222 1222222111111100000111222455554 67777632 23 7
Q ss_pred eEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEE---eCCCeEEEeecCCCcee---eeeec-cCceEEEE
Q 011711 377 TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICS---CNDDSVHLYELPSFMER---GRIFS-RREVRVIE 449 (479)
Q Consensus 377 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---~~dg~v~iwd~~~~~~~---~~~~~-~~~v~~l~ 449 (479)
.|+|||-+ + .+.... .+.....-++.|-|.|. ++++- ..|+.|.+|.-+..+.- ..... ..++..++
T Consensus 223 kirV~drE-g-~Lns~s---e~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 223 KIRVYDRE-G-ALNSTS---EPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred eEEEeccc-c-hhhccc---CcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence 99999976 2 222222 22222333344558887 55554 35667999986543221 11222 44499999
Q ss_pred ECCCc-eEEE---EcCCCcEEEEEecc
Q 011711 450 TGPDG-LFFT---GDGTGMLSVWKILA 472 (479)
Q Consensus 450 ~s~~g-~l~s---g~~dg~v~vw~~~~ 472 (479)
|+.++ .|+. ......|++|-+.+
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ecCCCCceeeeecccccceEEEEEecC
Confidence 99999 6665 44555599998765
No 339
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.011 Score=54.81 Aligned_cols=223 Identities=14% Similarity=0.100 Sum_probs=125.0
Q ss_pred eEEEeccCC-eeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCC-CEEEEEeCCCcEEEEECCCCceE-EEE
Q 011711 154 NVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSA-SVI 230 (479)
Q Consensus 154 ~~c~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~-~~l~s~s~Dg~v~vwd~~~~~~~-~~~ 230 (479)
.+.+.+... .+..++.+.+|+|.|+++. ..+..+..| ..+.+++|.-|. .+++.|-..|.|.|||+...+-. ..+
T Consensus 198 dlafSp~~~GLl~~asl~nkiki~dlet~-~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 198 DLAFSPFNEGLLGLASLGNKIKIMDLETS-CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMEL 275 (463)
T ss_pred hhccCccccceeeeeccCceEEEEecccc-eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhh
Confidence 455555555 6788899999999999998 778888888 899999997654 57888889999999999765421 111
Q ss_pred ec---CCceeEEEe-------CCCEEEEEcCCeEEEEEcCCCce----EEecCCCccEEEEEEcC--C-EEEEEeCCC--
Q 011711 231 NL---GAEVGSLIC-------EGPWVFVGMPNVVKAWHIESSAE----FSLDGPVGEVYSMVVAN--E-MLFAGAQDG-- 291 (479)
Q Consensus 231 ~~---~~~~~~~~~-------~~~~l~~~~~~~i~v~~~~~~~~----~~~~~~~~~v~~~~~~~--~-~l~~g~~dg-- 291 (479)
.. -.++..+.+ +..-++++.--.+..|++..... ....+..+.+.++.+.+ + .|++.-.+-
T Consensus 276 ~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~ 355 (463)
T KOG1645|consen 276 VANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNF 355 (463)
T ss_pred hhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCCCC
Confidence 11 112222221 22223333333445555543322 22234456666676665 3 333332210
Q ss_pred ----cEEEE-EccCCCCCcccceeeecCC---------CCCeEEEEEcCCE-EEEEeCCCeEEEEECCCCcEEEEEeCCC
Q 011711 292 ----NILVW-KGIPNTQNPFQLAALLKGH---------TRPVTCLAVGGKR-LYSGSMDNTIRVWDLDTLEAVMTLNGHT 356 (479)
Q Consensus 292 ----~i~iw-d~~~~~~~~~~~~~~~~~h---------~~~i~~l~~~~~~-l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 356 (479)
.|... |...+ +.....-..+ .....--..+.++ +.++..-+.+.+||..+++.++++.-.
T Consensus 356 p~~r~il~~~d~~dG----~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~- 430 (463)
T KOG1645|consen 356 PQSRFILGRIDFRDG----FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS- 430 (463)
T ss_pred ccceeeeeeeccccC----ceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecccC-
Confidence 01110 00011 0011111111 1111100112333 445667789999999999999999854
Q ss_pred CCcEEEEEc----CCEEEEEeCCCeEEEEEcC
Q 011711 357 DAPMSLLCW----DQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 357 ~~v~~~~~~----~~~l~s~s~dg~i~iwd~~ 384 (479)
.++..+.+. +.+|+.- .|..++||..+
T Consensus 431 epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 431 EPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred cceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 677777766 3455544 46678888654
No 340
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.60 E-value=0.056 Score=49.57 Aligned_cols=225 Identities=17% Similarity=0.201 Sum_probs=116.7
Q ss_pred EEEEeCC-CCCEEEEEeCCC-cEEEEECCCCceEEEEecCCc-----eeEEEeCCCEEEEEcCCeEEEEEcCCCceEEec
Q 011711 196 SGIALPL-RSDKLYSGSRDG-TVQLWDCHTGQSASVINLGAE-----VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLD 268 (479)
Q Consensus 196 ~~l~~s~-~~~~l~s~s~Dg-~v~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~ 268 (479)
..++.+| +...++.+-.-| ...+||..+++....+..... -..++.+|++|++..+..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~--------------- 72 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDY--------------- 72 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecccc---------------
Confidence 3566777 455666666666 467899999998877754322 123334566665542200
Q ss_pred CCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEE---------------
Q 011711 269 GPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYS--------------- 331 (479)
Q Consensus 269 ~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~s--------------- 331 (479)
....|.|-|||.... ++.+..+..|.-.-..+.+. +..|++
T Consensus 73 ------------------~~g~G~IgVyd~~~~----~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~k 130 (305)
T PF07433_consen 73 ------------------ETGRGVIGVYDAARG----YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAK 130 (305)
T ss_pred ------------------CCCcEEEEEEECcCC----cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCcee
Confidence 112234444444311 22223333222222222221 222222
Q ss_pred ---EeCCCeEEEEECCCCcEEEEEe----CCCCCcEEEEEc--CCEEEEEeCCCe-------EEEEEcCCCcceEEec--
Q 011711 332 ---GSMDNTIRVWDLDTLEAVMTLN----GHTDAPMSLLCW--DQYLLSCSLDNT-------IKVWIMTEEGNLEVAY-- 393 (479)
Q Consensus 332 ---gs~dg~I~iwd~~~~~~~~~~~----~h~~~v~~~~~~--~~~l~s~s~dg~-------i~iwd~~~~~~~~~~~-- 393 (479)
.+++-.+...|..+++.+.+.. .|...+.-+++. |..++..-..|. |-+++. ++.+..+.
T Consensus 131 LNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p 208 (305)
T PF07433_consen 131 LNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAP 208 (305)
T ss_pred cChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCC
Confidence 2445566777777888776633 355567666666 222222222221 222222 22122221
Q ss_pred -----cccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCceEEEEcCCCcE
Q 011711 394 -----THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDGLFFTGDGTGML 465 (479)
Q Consensus 394 -----~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g~l~sg~~dg~v 465 (479)
.....+.++++ ++++..+.+++=..+.+.+||..+++.+.... -..+..++..+++++++.+ .|.+
T Consensus 209 ~~~~~~l~~Y~gSIa~----~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-l~D~cGva~~~~~f~~ssG-~G~~ 279 (305)
T PF07433_consen 209 EEQWRRLNGYIGSIAA----DRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-LPDACGVAPTDDGFLVSSG-QGQL 279 (305)
T ss_pred hHHHHhhCCceEEEEE----eCCCCEEEEECCCCCEEEEEECCCCCEeeccc-cCceeeeeecCCceEEeCC-CccE
Confidence 12233344444 58888666777778999999999998876654 3456677777777555544 4443
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.58 E-value=0.064 Score=49.58 Aligned_cols=225 Identities=16% Similarity=0.131 Sum_probs=125.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE--eCCCEEEEEcCCeEEEEEcCCCceEE-------------
Q 011711 202 LRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSAEFS------------- 266 (479)
Q Consensus 202 ~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~v~~~~~~~~~~------------- 266 (479)
..++.|+.|..+| +.+++...............+..+. .+-+.+++-.|+.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccc
Confidence 4678899999998 9999983333333333222354444 35567777778999999987654332
Q ss_pred --ecCCCccEEEEE----EcCCEEEEEeCCCcEEEEEccCCCCCcc-cceeeecCCCCCeEEEEEcCCEEEEEeCCCeEE
Q 011711 267 --LDGPVGEVYSMV----VANEMLFAGAQDGNILVWKGIPNTQNPF-QLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIR 339 (479)
Q Consensus 267 --~~~~~~~v~~~~----~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~ 339 (479)
.......+...+ ......++......|.+|........ + .....+. -...+.+++|.++.++.|..++ ..
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~-f~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~~-f~ 160 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNS-FSKLLKEIS-LPDPPSSIAFLGNKICVGTSKG-FY 160 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccc-ccceeEEEE-cCCCcEEEEEeCCEEEEEeCCc-eE
Confidence 112223444444 11123344444558999988764221 2 2333333 3477889999999999988654 78
Q ss_pred EEECCCCcEEEEEeCCC------------CCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceE-EeccccCccceEEEe
Q 011711 340 VWDLDTLEAVMTLNGHT------------DAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLE-VAYTHNEDHGVLALG 405 (479)
Q Consensus 340 iwd~~~~~~~~~~~~h~------------~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~ 405 (479)
+.|+.++....-+.... .++..+... +.+|++ . |..-.+.|.. +.... ...........+.+.
T Consensus 161 ~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~-~-~~~g~fv~~~-G~~~r~~~i~W~~~p~~~~~~ 237 (275)
T PF00780_consen 161 LIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC-Y-DNIGVFVNKN-GEPSRKSTIQWSSAPQSVAYS 237 (275)
T ss_pred EEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEE-e-cceEEEEcCC-CCcCcccEEEcCCchhEEEEE
Confidence 88999776644432111 123333334 444443 2 3333444443 32222 222222222233331
Q ss_pred eeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec
Q 011711 406 GLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS 441 (479)
Q Consensus 406 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 441 (479)
.| ++++-+ ++.|.||++.+++.+..+..
T Consensus 238 ---~p----yli~~~-~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 238 ---SP----YLIAFS-SNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred ---CC----EEEEEC-CCEEEEEECcCCcEEEEEEC
Confidence 12 555444 46699999999988777664
No 342
>PHA02713 hypothetical protein; Provisional
Probab=97.56 E-value=0.0072 Score=61.76 Aligned_cols=189 Identities=5% Similarity=-0.056 Sum_probs=96.7
Q ss_pred EEcCC-EEEEEeCC------CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCC-----eEEEEECCC
Q 011711 278 VVANE-MLFAGAQD------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDN-----TIRVWDLDT 345 (479)
Q Consensus 278 ~~~~~-~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg-----~I~iwd~~~ 345 (479)
+..++ ..++|+.+ ..+..||..++. +.....+............++...+.|+.++ ++..||..+
T Consensus 300 a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~---W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENKI---HVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred EEECCEEEEEcCCCCCCCccceEEEEECCCCe---EeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCC
Confidence 33344 66666643 347788876653 2222222222223334455677778888764 488899887
Q ss_pred CcEEE--EEeCCCCCcEEEEEcCCEEEEEeCCC-----------------------eEEEEEcCCCcceEEeccccCccc
Q 011711 346 LEAVM--TLNGHTDAPMSLLCWDQYLLSCSLDN-----------------------TIKVWIMTEEGNLEVAYTHNEDHG 400 (479)
Q Consensus 346 ~~~~~--~~~~h~~~v~~~~~~~~~l~s~s~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~ 400 (479)
.+-.. .+.............+...+.|+.++ .+..||..+.+-. ..........
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~-~v~~m~~~r~ 455 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE-TLPNFWTGTI 455 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe-ecCCCCcccc
Confidence 54321 11111112223344567777777653 4677877664311 1111111111
Q ss_pred eEEEeeeeCCCCCcEEEEEeCC------CeEEEeecCC-C--ceeeeeeccCceEEEEECCCceEEEEcCCC--cEEEEE
Q 011711 401 VLALGGLNDPDGNPVLICSCND------DSVHLYELPS-F--MERGRIFSRREVRVIETGPDGLFFTGDGTG--MLSVWK 469 (479)
Q Consensus 401 ~~~~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~-~--~~~~~~~~~~~v~~l~~s~~g~l~sg~~dg--~v~vw~ 469 (479)
..... .-+++ +.+.|+.+ ..+..||..+ . ..+..+........++...+.++++||.|| .+..||
T Consensus 456 ~~~~~---~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 456 RPGVV---SHKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cCcEE---EECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcC
Confidence 11111 13455 66666654 2467899876 2 333333333333344444333888999888 777777
Q ss_pred eccCC
Q 011711 470 ILAKP 474 (479)
Q Consensus 470 ~~~~~ 474 (479)
..+.+
T Consensus 532 ~~~~~ 536 (557)
T PHA02713 532 VYTYE 536 (557)
T ss_pred ccccc
Confidence 76643
No 343
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.51 E-value=0.14 Score=51.95 Aligned_cols=181 Identities=17% Similarity=0.128 Sum_probs=107.4
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEeccc-ccEEE----------EEeCCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHK-KAVSG----------IALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~-~~V~~----------l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~ 229 (479)
.+.+..++.++.|.-.|..++ +.+-++.... ..+.. +++ .+..++.++.|+.|.-.|.++|+.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TG-k~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTG-KELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCC-ceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 456666677788888898888 5665554211 11111 122 245678888999999999999999887
Q ss_pred EecCCce-------eEEEeCCCEEEEEc------CCeEEEEEcCCCceEEe-c---CC----------------------
Q 011711 230 INLGAEV-------GSLICEGPWVFVGM------PNVVKAWHIESSAEFSL-D---GP---------------------- 270 (479)
Q Consensus 230 ~~~~~~~-------~~~~~~~~~l~~~~------~~~i~v~~~~~~~~~~~-~---~~---------------------- 270 (479)
....... ..+..++.+++... ++.|..+|.++++.+-. . ..
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 7643211 11223554444332 57899999999887521 1 10
Q ss_pred ------CccEE-EEEEcCC--EEEEEeCC-----C-----------cEEEEEccCCCCCcccceeeec--CC--------
Q 011711 271 ------VGEVY-SMVVANE--MLFAGAQD-----G-----------NILVWKGIPNTQNPFQLAALLK--GH-------- 315 (479)
Q Consensus 271 ------~~~v~-~~~~~~~--~l~~g~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~--~h-------- 315 (479)
.+.+. .+.++++ +++.+..+ + .|...|+++++. .-.++ .|
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~-----~W~~Q~~~~D~wD~d~~ 300 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI-----KWHYQTTPHDEWDYDGV 300 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE-----EEeeeCCCCCCccccCC
Confidence 00111 2355554 56665522 2 566777777653 12222 12
Q ss_pred CCC-eEEEEEcCC---EEEEEeCCCeEEEEECCCCcEE
Q 011711 316 TRP-VTCLAVGGK---RLYSGSMDNTIRVWDLDTLEAV 349 (479)
Q Consensus 316 ~~~-i~~l~~~~~---~l~sgs~dg~I~iwd~~~~~~~ 349 (479)
..+ +..+..+++ .++.+..+|.+++.|.++++++
T Consensus 301 ~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 301 NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 111 122223454 6889999999999999999986
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.48 E-value=0.0035 Score=61.48 Aligned_cols=211 Identities=14% Similarity=0.092 Sum_probs=99.4
Q ss_pred CCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCccccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCCCeE
Q 011711 94 PSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFW 173 (479)
Q Consensus 94 ~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d~~i 173 (479)
..+.++|+|++++.++ ||.--|.... ..+.-....+...|+.. .+.++.-...+.|
T Consensus 36 ~~ls~npngr~v~V~g-~geY~iyt~~----------------------~~r~k~~G~g~~~vw~~-~n~yAv~~~~~~I 91 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVCG-DGEYEIYTAL----------------------AWRNKAFGSGLSFVWSS-RNRYAVLESSSTI 91 (443)
T ss_dssp SEEEE-TTSSEEEEEE-TTEEEEEETT----------------------TTEEEEEEE-SEEEE-T-SSEEEEE-TTS-E
T ss_pred eeEEECCCCCEEEEEc-CCEEEEEEcc----------------------CCcccccCceeEEEEec-CccEEEEECCCeE
Confidence 5677889999999966 8887777300 00000011123445555 5566666668888
Q ss_pred EEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE--eCCCEEEEEcC
Q 011711 174 HSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVGMP 251 (479)
Q Consensus 174 ~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 251 (479)
.|+.--+. +....++-. ..+..|-. |.+|+..+.+ .|.+||+++++.++.+.... +..+. .++.+++...+
T Consensus 92 ~I~kn~~~-~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 92 KIYKNFKN-EVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTK 164 (443)
T ss_dssp EEEETTEE--TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S
T ss_pred EEEEcCcc-ccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeC
Confidence 88633222 122223221 12333332 7777777665 89999999999999998764 33333 45778887777
Q ss_pred CeEEEEEcCCC------------ceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCe
Q 011711 252 NVVKAWHIESS------------AEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (479)
Q Consensus 252 ~~i~v~~~~~~------------~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i 319 (479)
..+.+++.+.. ...........|.+..|..+.++-.+.. .++. +..+. ...+..-..++
T Consensus 165 ~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge------~~~i~~ld~~~ 235 (443)
T PF04053_consen 165 DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGE------TGIIAHLDKPL 235 (443)
T ss_dssp -SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTE------EEEEEE-SS--
T ss_pred CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCC------cceEEEcCCce
Confidence 78887776554 2222222255666777777644333333 5544 22222 11111112333
Q ss_pred EEEEEcC--CEEEEEeCCCeEEEEECC
Q 011711 320 TCLAVGG--KRLYSGSMDNTIRVWDLD 344 (479)
Q Consensus 320 ~~l~~~~--~~l~sgs~dg~I~iwd~~ 344 (479)
.=+.+.+ +.++....|+.|..+.+.
T Consensus 236 yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 236 YLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 3333432 556666666666555543
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.47 E-value=0.016 Score=44.26 Aligned_cols=102 Identities=26% Similarity=0.274 Sum_probs=67.7
Q ss_pred eEEEEE---c---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEE
Q 011711 319 VTCLAV---G---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEV 391 (479)
Q Consensus 319 i~~l~~---~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~ 391 (479)
|++|++ + .+.|++|+.|..|++|+-. +.+.++... +.|..+... +..++.+-.+|+|-+|+-. ..+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeee
Confidence 556665 2 4789999999999999744 677777644 456666665 7889999999999999753 22333
Q ss_pred eccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEE
Q 011711 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHL 427 (479)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~i 427 (479)
...... ...+.. ...+.+|.+-|++|-.+|.|-+
T Consensus 77 iKSK~~-~~~~~~-~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 77 IKSKNQ-VTSMAF-YDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eccCCC-eEEEEE-EcCCCCCceEEEEEecCCeEEe
Confidence 333222 222222 1223566667888988988753
No 346
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.45 E-value=0.0032 Score=65.23 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=90.8
Q ss_pred EeCCCeEEEEECCCCcEEEEEeCCCCC-cEEEEEc-------CCEEEEEeCCCeEEEEEcCCCcc-eEEeccccCccceE
Q 011711 332 GSMDNTIRVWDLDTLEAVMTLNGHTDA-PMSLLCW-------DQYLLSCSLDNTIKVWIMTEEGN-LEVAYTHNEDHGVL 402 (479)
Q Consensus 332 gs~dg~I~iwd~~~~~~~~~~~~h~~~-v~~~~~~-------~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~ 402 (479)
......|+-.|+..|+.+..+..|... |..+... +...+.|-.++.+..||.+-... +.....+.- ....
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~ 578 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKN 578 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCC
Confidence 345688999999999999999988765 7777765 34567788889999999986542 211111111 1111
Q ss_pred EEee-eeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 403 ALGG-LNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 403 ~~~~-~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
.|++ ..+.+| .||.|+.+|.||+||--.......+.. ..+|..|..+.|| +|++.+ +..+.+++..
T Consensus 579 ~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 579 NFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 1222 223455 689999999999999544333333333 7899999999999 544444 4567777754
No 347
>PHA02713 hypothetical protein; Provisional
Probab=97.34 E-value=0.029 Score=57.37 Aligned_cols=213 Identities=12% Similarity=0.125 Sum_probs=108.0
Q ss_pred cEEEEECCCCceEEEEecCCce---eEEEeCCCEEEEEc-C------CeEEEEEcCCCceEEec---CCCccEEEEEEcC
Q 011711 215 TVQLWDCHTGQSASVINLGAEV---GSLICEGPWVFVGM-P------NVVKAWHIESSAEFSLD---GPVGEVYSMVVAN 281 (479)
Q Consensus 215 ~v~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~-~------~~i~v~~~~~~~~~~~~---~~~~~v~~~~~~~ 281 (479)
.+..||..+++....-..+.+. .....++.+.++|+ + +.+..||+.++.-.... ............+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g 352 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD 352 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence 5677887776644332322221 22334566555553 2 34778888777543222 1222233333444
Q ss_pred CEEEEEeCCC-----cEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCC--------------------
Q 011711 282 EMLFAGAQDG-----NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDN-------------------- 336 (479)
Q Consensus 282 ~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg-------------------- 336 (479)
...+.|+.++ .+..||..++. +.....+.........+..++...+.|+.++
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~---W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDK---WKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCe---EEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence 4667777654 47889987653 3333333222222334455677777787653
Q ss_pred ---eEEEEECCCCcEE--EEEeCCCCCcEEEEEcCCEEEEEeCC------CeEEEEEcCCCcceEEeccccCccceEEEe
Q 011711 337 ---TIRVWDLDTLEAV--MTLNGHTDAPMSLLCWDQYLLSCSLD------NTIKVWIMTEEGNLEVAYTHNEDHGVLALG 405 (479)
Q Consensus 337 ---~I~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 405 (479)
.+..||..+.+-. ..+.............+...+.|+.+ ..+..||.++....................
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI 509 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence 4778888775432 12211111222333446666667654 246788887621222222222111111221
Q ss_pred eeeCCCCCcEEEEEeCCC--eEEEeecCCCc
Q 011711 406 GLNDPDGNPVLICSCNDD--SVHLYELPSFM 434 (479)
Q Consensus 406 ~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~ 434 (479)
. -+|+ +.+.|+.++ .+..||..+.+
T Consensus 510 ~---~~~~-iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 510 L---HDNT-IMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred E---ECCE-EEEEeeecceeehhhcCccccc
Confidence 1 3455 888888888 67777776643
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.32 E-value=0.058 Score=53.04 Aligned_cols=218 Identities=9% Similarity=0.011 Sum_probs=109.1
Q ss_pred CCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 011711 152 PKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (479)
Q Consensus 152 ~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 231 (479)
+..+...|.+..++. ..+|...|+..... .... .+.-...+|.+++ .+|+-....+|.|+.--+.+....+.
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~~-r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAW-RNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTTT-EEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT----
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccCC-cccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEc
Confidence 345566665554444 66677777774332 2211 2444567888855 46777768899997544444445566
Q ss_pred cCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCC-----CCC
Q 011711 232 LGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPN-----TQN 304 (479)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~-----~~~ 304 (479)
.+..+..+.. |.+|....++.|.+||.++++.+....... |..+.|+++ +++..+. ..+.+++.... ...
T Consensus 107 ~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~-~~i~il~~~~~~~~~~~~~ 183 (443)
T PF04053_consen 107 LPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTK-DSIYILKYNLEAVAAIPEE 183 (443)
T ss_dssp -SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTT
T ss_pred CCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeC-CeEEEEEecchhccccccc
Confidence 6555555555 888888888899999999998876555443 899999987 6666654 47888775433 000
Q ss_pred ccc-ceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcC--CEEEEEeCCCeEEEE
Q 011711 305 PFQ-LAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD--QYLLSCSLDNTIKVW 381 (479)
Q Consensus 305 ~~~-~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~i~iw 381 (479)
..+ ....+..-...|.+..|.++.++-.+.. .|+. +-.|+. ..+..-..++.=+...+ +.++....|+.+..+
T Consensus 184 g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 184 GVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp B-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred CchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEE
Confidence 011 1222322256788888887655555544 6665 333332 12221122333333334 777777778777777
Q ss_pred EcC
Q 011711 382 IMT 384 (479)
Q Consensus 382 d~~ 384 (479)
.+.
T Consensus 260 ~ld 262 (443)
T PF04053_consen 260 ELD 262 (443)
T ss_dssp E--
T ss_pred EEC
Confidence 664
No 349
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.00034 Score=59.90 Aligned_cols=138 Identities=12% Similarity=0.122 Sum_probs=83.9
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEE-eCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeee
Q 011711 329 LYSGSMDNTIRVWDLDTLEAVMTL-NGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGL 407 (479)
Q Consensus 329 l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (479)
+..-+.||.|+-++++..+.-..- .-|... +.+.-.+..++.|+.+|.|.+|......................+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I--- 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI--- 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc---
Confidence 445567888888887653322111 112222 344444788999999999999988643322222222222222222
Q ss_pred eCCCCCc--EEEEEeCCCeEEEeecCCCceeeeeecc--CceEEEEECCCc-eEEEE--cCCCcEEEEEecc
Q 011711 408 NDPDGNP--VLICSCNDDSVHLYELPSFMERGRIFSR--REVRVIETGPDG-LFFTG--DGTGMLSVWKILA 472 (479)
Q Consensus 408 ~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~v~~l~~s~~g-~l~sg--~~dg~v~vw~~~~ 472 (479)
|.++. +..+++.||.|+.|++.-.+.+....+. .+......+..+ .+... +.|..++.|++..
T Consensus 109 --p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 --PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred --ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 44444 8889999999999999888777766542 344444444333 55555 7777777787754
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.26 E-value=0.037 Score=42.29 Aligned_cols=97 Identities=20% Similarity=0.284 Sum_probs=66.5
Q ss_pred EEEEEeCC---C-CCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEe--CCCEEEEEcCCeEEEEEcCCCceEEec
Q 011711 195 VSGIALPL---R-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC--EGPWVFVGMPNVVKAWHIESSAEFSLD 268 (479)
Q Consensus 195 V~~l~~s~---~-~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~i~v~~~~~~~~~~~~ 268 (479)
|++|++.. | .+.|+.||.|..||+|+- .+.+.++.....+..+.. .+++.++-.+|+|-+|+-... ....+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R-lWRiK 78 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR-LWRIK 78 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcce-eeeec
Confidence 66777633 2 357999999999999985 367788888888877775 556666778899988876332 22222
Q ss_pred CCCccEEEEEEc---CC---EEEEEeCCCcEEE
Q 011711 269 GPVGEVYSMVVA---NE---MLFAGAQDGNILV 295 (479)
Q Consensus 269 ~~~~~v~~~~~~---~~---~l~~g~~dg~i~i 295 (479)
....+.++.+. .+ .|++|-.+|.|-+
T Consensus 79 -SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 79 -SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22335555543 22 7999999988753
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.18 E-value=0.28 Score=48.16 Aligned_cols=191 Identities=10% Similarity=0.011 Sum_probs=95.8
Q ss_pred eEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeee---cCCCCCeEEEEEcCCE
Q 011711 253 VVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALL---KGHTRPVTCLAVGGKR 328 (479)
Q Consensus 253 ~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~---~~h~~~i~~l~~~~~~ 328 (479)
.|.+|+......-+..-..+.+.++.|..+ .|++-..||.+++||+.... .+...... .-....+....+.++-
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCCCC
Confidence 477777776665444433489999999877 88899999999999986432 11111111 1111222222332222
Q ss_pred EEEEeCCCeEEEEECCCCc-EEEEE---eC-------CCCC--cEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccc
Q 011711 329 LYSGSMDNTIRVWDLDTLE-AVMTL---NG-------HTDA--PMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395 (479)
Q Consensus 329 l~sgs~dg~I~iwd~~~~~-~~~~~---~~-------h~~~--v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (479)
++.-..++.+.+.+--... ....+ .. +... +..+.......+....++.+.+.+-..... ...
T Consensus 140 ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~ 215 (410)
T PF04841_consen 140 IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----IDS 215 (410)
T ss_pred EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----ccC
Confidence 3333445555544322211 11111 11 0000 111111233444444455555443222111 111
Q ss_pred cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec--cCceEEEEECCCc
Q 011711 396 NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS--RREVRVIETGPDG 454 (479)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~l~~s~~g 454 (479)
..+...+++ ||+++ ++|.-..+|.+.+.+.+-.+....+.. ......|.|.-+.
T Consensus 216 ~~~i~~iav----Spng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 216 DGPIIKIAV----SPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCCeEEEEE----CCCCC-EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 223334444 69998 777777889998887665555555543 3555666666544
No 352
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.12 E-value=0.23 Score=47.80 Aligned_cols=143 Identities=17% Similarity=0.078 Sum_probs=69.6
Q ss_pred CCCCeEEEEEc--CCEEEEE--eCC---CeEEEEECCCCcEEEEEeCC-CCCc---EEEEE---c-CCEEEEEeCCCeEE
Q 011711 315 HTRPVTCLAVG--GKRLYSG--SMD---NTIRVWDLDTLEAVMTLNGH-TDAP---MSLLC---W-DQYLLSCSLDNTIK 379 (479)
Q Consensus 315 h~~~i~~l~~~--~~~l~sg--s~d---g~I~iwd~~~~~~~~~~~~h-~~~v---~~~~~---~-~~~l~s~s~dg~i~ 379 (479)
....+..+.|. +..|+.. +.+ -.+.+.|..+++....+... ...+ ....+ . +.++.....||.-+
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 34456677774 4424333 222 24667788776654333221 1111 23332 2 34666666788655
Q ss_pred EEEcCCCcce-EEeccccCccceEEEeeeeCCCCCcEEEEEeCCC----eEEEeecCCCceeeeeeccCce-EEEEECCC
Q 011711 380 VWIMTEEGNL-EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD----SVHLYELPSFMERGRIFSRREV-RVIETGPD 453 (479)
Q Consensus 380 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~v-~~l~~s~~ 453 (479)
||-++..... ..+....-.+.. ...++++++.+..++..++ .++.-++..+.....+...... ..+.|||+
T Consensus 262 ly~~~~~~~~~~~lT~G~~~V~~---i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spd 338 (353)
T PF00930_consen 262 LYLYDLDGGKPRQLTSGDWEVTS---ILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPD 338 (353)
T ss_dssp EEEEETTSSEEEESS-SSS-EEE---EEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TT
T ss_pred EEEEcccccceeccccCceeecc---cceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCC
Confidence 5544433322 223222222211 2233577776777776533 4555555523334444443333 59999999
Q ss_pred c--eEEEEc
Q 011711 454 G--LFFTGD 460 (479)
Q Consensus 454 g--~l~sg~ 460 (479)
+ ++.+.+
T Consensus 339 g~y~v~~~s 347 (353)
T PF00930_consen 339 GKYYVDTYS 347 (353)
T ss_dssp SSEEEEEEE
T ss_pred CCEEEEEEc
Confidence 9 444443
No 353
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.09 E-value=0.00036 Score=68.15 Aligned_cols=195 Identities=16% Similarity=0.262 Sum_probs=120.1
Q ss_pred ccEEEEEEc--CC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEe----CCCeEEE
Q 011711 272 GEVYSMVVA--NE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGS----MDNTIRV 340 (479)
Q Consensus 272 ~~v~~~~~~--~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs----~dg~I~i 340 (479)
..+.|+++. .+ .+++|..+|.|.+-.++..... -.....+|..+.++++|+ .+.|+.|- .|..+.|
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc---cceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 344555543 22 8899999999999988765431 234456788899999997 45666663 4668999
Q ss_pred EECCCC--cEEE--EEeC-CCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCC-CC
Q 011711 341 WDLDTL--EAVM--TLNG-HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDP-DG 412 (479)
Q Consensus 341 wd~~~~--~~~~--~~~~-h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 412 (479)
||+.++ .+.. .+.+ ......++.+. .+.+++|.....+.++|++.... .........+..+.+ +| .+
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tV----dp~~~ 208 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITV----DPFSP 208 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhccccee----cCCCC
Confidence 999876 2221 1222 22223344444 67888898888999999984321 111111122233344 35 33
Q ss_pred CcEEEEEeCCCeEEEeec-CCC-ceeeeeec-----cCceEEEEECCCc--eEEEEcC-CCcEEEEEeccCCCC
Q 011711 413 NPVLICSCNDDSVHLYEL-PSF-MERGRIFS-----RREVRVIETGPDG--LFFTGDG-TGMLSVWKILAKPNA 476 (479)
Q Consensus 413 ~~~l~s~~~dg~v~iwd~-~~~-~~~~~~~~-----~~~v~~l~~s~~g--~l~sg~~-dg~v~vw~~~~~~~~ 476 (479)
. ++++ ..|+.|.+||. ..- ..+..+.+ ...+..++|.|.. ++++... .++|+++++..-...
T Consensus 209 n-Y~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~ 280 (783)
T KOG1008|consen 209 N-YFCS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTE 280 (783)
T ss_pred C-ceec-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCc
Confidence 3 5554 45999999993 222 22333333 2349999999965 6666554 578999998765443
No 354
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.02 E-value=0.043 Score=56.10 Aligned_cols=189 Identities=13% Similarity=0.110 Sum_probs=102.0
Q ss_pred EEEEEcCC-EEEEEeCC------CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCe-----EEEEE
Q 011711 275 YSMVVANE-MLFAGAQD------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNT-----IRVWD 342 (479)
Q Consensus 275 ~~~~~~~~-~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~-----I~iwd 342 (479)
.+++..++ ..++|+.| ..+..||...++ +.....+............+|...++|+.||. |-.||
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~---W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ---WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCc---eeccCCccCccccceeEEECCEEEEEeccccccccccEEEec
Confidence 34555555 77788888 347778877765 44444444445555555667888999999874 77788
Q ss_pred CCCCcEE--EEEeCCCCCcEEEEEcCCEEEEEeCCC------eEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCc
Q 011711 343 LDTLEAV--MTLNGHTDAPMSLLCWDQYLLSCSLDN------TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNP 414 (479)
Q Consensus 343 ~~~~~~~--~~~~~h~~~v~~~~~~~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (479)
..+.+-- ..+.......-...+.+...++|+.++ ++..||..++.-... ......-....+. .-++.
T Consensus 403 p~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~-~~M~~~R~~~g~a---~~~~~- 477 (571)
T KOG4441|consen 403 PVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI-APMNTRRSGFGVA---VLNGK- 477 (571)
T ss_pred CCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec-CCcccccccceEE---EECCE-
Confidence 7764422 112111122233334477777888654 467788776532111 1111111111111 13444
Q ss_pred EEEEEeCCC-----eEEEeecCCCceeee--eeccCceEEEEECCCceEEEEcCCC-----cEEEEEec
Q 011711 415 VLICSCNDD-----SVHLYELPSFMERGR--IFSRREVRVIETGPDGLFFTGDGTG-----MLSVWKIL 471 (479)
Q Consensus 415 ~l~s~~~dg-----~v~iwd~~~~~~~~~--~~~~~~v~~l~~s~~g~l~sg~~dg-----~v~vw~~~ 471 (479)
+.+.|+.|+ +|..||..+.+-... +.....-..++...+...+.|+.|| +|..||-.
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCC
Confidence 778887776 377788776543332 2222222233333233888888876 45555443
No 355
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.98 E-value=0.35 Score=45.95 Aligned_cols=267 Identities=12% Similarity=0.029 Sum_probs=120.7
Q ss_pred EEeccCCeeE-eCCCCC--eEEEeecCCCceeeEEEeccc-ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 011711 156 CYHWLSGNCV-KGDECR--FWHSWFCGEGFTMLAKLEGHK-KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (479)
Q Consensus 156 c~~~~~~~~~-~g~~d~--~i~vw~~~~~~~~~~~~~~H~-~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 231 (479)
|+...+..++ +++.|+ .+.+-|++++ .+.+|..+. .......++++++.++-......|+--|+++.+....+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~--~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATG--EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccC--EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 4444555444 334444 4555566665 344454443 223345667888888766666789999999998877777
Q ss_pred cCCceeE---EE--eCCCEEEEEc-----------------------CCeEEEEEcCCCceEEecCCCccEEEEEEcCC-
Q 011711 232 LGAEVGS---LI--CEGPWVFVGM-----------------------PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE- 282 (479)
Q Consensus 232 ~~~~~~~---~~--~~~~~l~~~~-----------------------~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~- 282 (479)
.+..... .. .++..++... ...|...|+.+++...+......+.-+.++|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 6655432 21 2455544320 12566778888887766666677778888877
Q ss_pred --EEEEEeC---CCc-EEEEEccCCCCCcccceeeecCCCC-CeEE-EEE--cCCEEEE-E----eCCCeEEEEECCCCc
Q 011711 283 --MLFAGAQ---DGN-ILVWKGIPNTQNPFQLAALLKGHTR-PVTC-LAV--GGKRLYS-G----SMDNTIRVWDLDTLE 347 (479)
Q Consensus 283 --~l~~g~~---dg~-i~iwd~~~~~~~~~~~~~~~~~h~~-~i~~-l~~--~~~~l~s-g----s~dg~I~iwd~~~~~ 347 (479)
.|.-+-+ +.. -+||-+++.... ...+..|.. .+.. =-| +|..+.- + +.+..|.-+|+.+++
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~----~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSN----VKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS-------EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCc----ceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 4444332 321 356766554332 122222222 1111 122 2444332 2 234467777888876
Q ss_pred EEEEEeCCCCCcEEEEEc--CCEEEEEeCCC----------------eEEEEEcCCCcceEEeccccC-------ccceE
Q 011711 348 AVMTLNGHTDAPMSLLCW--DQYLLSCSLDN----------------TIKVWIMTEEGNLEVAYTHNE-------DHGVL 402 (479)
Q Consensus 348 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg----------------~i~iwd~~~~~~~~~~~~~~~-------~~~~~ 402 (479)
........ ...-+..+ +++++-=+.|. .|+++++..+... .+..|.. .....
T Consensus 276 ~~~~~~~p--~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~ 352 (386)
T PF14583_consen 276 RRRLMEMP--WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVT 352 (386)
T ss_dssp EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBSSTT
T ss_pred ceEEEeCC--ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCCccC
Confidence 54322211 12222222 45554433332 4666777654432 2222211 00111
Q ss_pred EEeeeeCCCCCcEEEEEeCCCeEEEeecC
Q 011711 403 ALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (479)
Q Consensus 403 ~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 431 (479)
.-...++|||+.+|..+...|...||-++
T Consensus 353 hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 353 HPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp ----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 22334579999999999999988887543
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.96 E-value=0.22 Score=50.26 Aligned_cols=201 Identities=11% Similarity=0.028 Sum_probs=115.3
Q ss_pred CCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCC----CcEEEEECCCCceEEEEecCCceeEEEeCCC
Q 011711 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD----GTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (479)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (479)
..+.+.+.|.++. +...++.--. .-..++++++|+++++.+.+ .++..-+..+......+.... +..+..+|+
T Consensus 213 y~~~vSvID~etm-eV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK 289 (635)
T PRK02888 213 YRSLFTAVDAETM-EVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGK 289 (635)
T ss_pred eeEEEEEEECccc-eEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCC
Confidence 4466777777654 4444444322 33567888999998888642 233333333322222222211 122334677
Q ss_pred EEEEEcCCeEEEEEcCC-----CceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCC---cc----cce
Q 011711 245 WVFVGMPNVVKAWHIES-----SAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQN---PF----QLA 309 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~-----~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~---~~----~~~ 309 (479)
+... .++.|.+.|..+ ........-......+.++|| .++++..+.+|.++|+.+.... .. .+.
T Consensus 290 ~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv 368 (635)
T PRK02888 290 FKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV 368 (635)
T ss_pred EEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE
Confidence 6666 477899999988 344444445566778889988 5666677999999999774320 00 011
Q ss_pred eeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCC----------CcEEEEEeCCCCCcEEE-------EEcCCEEE
Q 011711 310 ALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT----------LEAVMTLNGHTDAPMSL-------LCWDQYLL 370 (479)
Q Consensus 310 ~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~----------~~~~~~~~~h~~~v~~~-------~~~~~~l~ 370 (479)
....--.++ ...+|+ |+...|-..|..|..||+.+ ...+.++.-|-.+..-. ..+|++|+
T Consensus 369 aevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~ 447 (635)
T PRK02888 369 AEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLV 447 (635)
T ss_pred EeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEE
Confidence 122222222 234565 66777888999999999976 34455555443332211 23366666
Q ss_pred EEeC
Q 011711 371 SCSL 374 (479)
Q Consensus 371 s~s~ 374 (479)
+...
T Consensus 448 ~~nk 451 (635)
T PRK02888 448 SLNK 451 (635)
T ss_pred Eccc
Confidence 6543
No 357
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.92 E-value=0.027 Score=58.60 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=68.0
Q ss_pred CEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcE
Q 011711 282 EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPM 360 (479)
Q Consensus 282 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~ 360 (479)
+..+.|-.++.+..||.+-.......-............|++-. ..+||+|+.+|.||+||--..+....+.+-..+|.
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~ 622 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPII 622 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCee
Confidence 36788888999999998865421000000011234567788887 78999999999999999543333344566678888
Q ss_pred EEEEc--CCEEEEEeCCCeEEEEEc
Q 011711 361 SLLCW--DQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 361 ~~~~~--~~~l~s~s~dg~i~iwd~ 383 (479)
.+... |++|++.+. ..+.+++.
T Consensus 623 ~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 623 GIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EEEecCCCcEEEEeec-ceEEEEEE
Confidence 88776 788777664 56777764
No 358
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.87 E-value=0.00057 Score=66.79 Aligned_cols=163 Identities=17% Similarity=0.190 Sum_probs=91.0
Q ss_pred cCCCccEEEEEEcCC---EEEEEe----CCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeE
Q 011711 268 DGPVGEVYSMVVANE---MLFAGA----QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTI 338 (479)
Q Consensus 268 ~~~~~~v~~~~~~~~---~l~~g~----~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I 338 (479)
.++...+++++|.+- .||+|- .|..+.|||+.+.-..|++......+......+++|. .+.+.+|.....+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV 178 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence 356667788888764 666663 3567999999887333232222222233445577775 7788899999999
Q ss_pred EEEECCC-CcEEEEEeCCCCCcEEEEE-cCCEEEEEeCCCeEEEEE-cCCCcceEEeccccC-ccceEEEeeeeCCCCCc
Q 011711 339 RVWDLDT-LEAVMTLNGHTDAPMSLLC-WDQYLLSCSLDNTIKVWI-MTEEGNLEVAYTHNE-DHGVLALGGLNDPDGNP 414 (479)
Q Consensus 339 ~iwd~~~-~~~~~~~~~h~~~v~~~~~-~~~~l~s~s~dg~i~iwd-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 414 (479)
.++|++. ......+....-.-..+.. .++++++-. ||.|.+|| ..+-+.......+.. ......+.+.|.|...-
T Consensus 179 ~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg 257 (783)
T KOG1008|consen 179 HIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG 257 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc
Confidence 9999983 2222222211111123333 367777766 99999999 443332222222221 11111222333344333
Q ss_pred EEEEE-eCCCeEEEeecC
Q 011711 415 VLICS-CNDDSVHLYELP 431 (479)
Q Consensus 415 ~l~s~-~~dg~v~iwd~~ 431 (479)
++++. -..++|+++|+.
T Consensus 258 lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 258 LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hhhhhccCcceEEEeccc
Confidence 44444 455789999875
No 359
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.86 E-value=0.36 Score=50.97 Aligned_cols=226 Identities=15% Similarity=0.144 Sum_probs=117.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecCCceeE----------------------------EEeCCCEEEEEcCCeEE
Q 011711 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS----------------------------LICEGPWVFVGMPNVVK 255 (479)
Q Consensus 204 ~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~l~~~~~~~i~ 255 (479)
+..|+.++.++.|.-.|..+|+.+..+........ ..+.+++++...|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 56788888889999999999998888775543211 01233566666899999
Q ss_pred EEEcCCCceEEecCCCccEE-----------------EEEEcCCEEEEEeC----------CCcEEEEEccCCCCCcccc
Q 011711 256 AWHIESSAEFSLDGPVGEVY-----------------SMVVANEMLFAGAQ----------DGNILVWKGIPNTQNPFQL 308 (479)
Q Consensus 256 v~~~~~~~~~~~~~~~~~v~-----------------~~~~~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~ 308 (479)
..|.++++.....+..+.+. .-.+..+.+++|+. +|.|+-+|..+++.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl----- 348 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL----- 348 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE-----
Confidence 99999988764333222221 11233557777753 68899999999864
Q ss_pred eeeec-CCCCCeEEEEEcCCEEEEEeCCC-eEEEEECCCCcEEEEEeCCCCCcEEEEEcC--CEEEEEeCCCeEEEEEcC
Q 011711 309 AALLK-GHTRPVTCLAVGGKRLYSGSMDN-TIRVWDLDTLEAVMTLNGHTDAPMSLLCWD--QYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 309 ~~~~~-~h~~~i~~l~~~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~i~iwd~~ 384 (479)
.-.+. +.... ......+.....++.+. ...-+|.+++....-. +...+ .+.+ ......-..+.|.-.|.+
T Consensus 349 ~W~~~~g~p~~-~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~p----d~~g~~r~~~~n~y~~slvALD~~ 422 (764)
T TIGR03074 349 VWAWDPGNPDP-TAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQTP----DQWGGDRTPADEKYSSSLVALDAT 422 (764)
T ss_pred eeEEecCCCCc-ccCCCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCccc----cccCCccccCcccccceEEEEeCC
Confidence 22211 11100 11111222222122111 2233344433321111 11000 0000 000011124556666777
Q ss_pred CCcceEEeccccCccc------eEEEeeeeCCCC--CcEEEEEeCCCeEEEeecCCCceeeeee
Q 011711 385 EEGNLEVAYTHNEDHG------VLALGGLNDPDG--NPVLICSCNDDSVHLYELPSFMERGRIF 440 (479)
Q Consensus 385 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 440 (479)
+++.....+...++.. ...+.-....+| ...++.++.+|.++++|-++++.+....
T Consensus 423 TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 423 TGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 7766555544221110 011110111244 2478889999999999999998876643
No 360
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.84 E-value=0.41 Score=44.61 Aligned_cols=250 Identities=14% Similarity=0.156 Sum_probs=138.5
Q ss_pred CcEEEEECCCCceEEEEecCCce-eEEEeCCCEEEEE-----------cCCeEEEEEcCCCceE---EecCC-CccE---
Q 011711 214 GTVQLWDCHTGQSASVINLGAEV-GSLICEGPWVFVG-----------MPNVVKAWHIESSAEF---SLDGP-VGEV--- 274 (479)
Q Consensus 214 g~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~-----------~~~~i~v~~~~~~~~~---~~~~~-~~~v--- 274 (479)
+.+.|.|.++++.+..+..+-.. ..+.++++.+++. ....|.+||..+-... .+... ...+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~ 96 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY 96 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--
T ss_pred ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccc
Confidence 47999999999998888765433 3455678877653 2347999999987643 22221 1111
Q ss_pred -EEEEEcCC----EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECC-CCc
Q 011711 275 -YSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLD-TLE 347 (479)
Q Consensus 275 -~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~-~~~ 347 (479)
..+.++.+ ++.-.+-...|.|.|+..++ .+..+. ...+..+-.. +..|.+-+.||++.-..+. .|+
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-----vv~ei~--~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKK-----VVGEID--TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE-----EEEEEE--GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSS
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCc-----eeeeec--CCCEEEEEecCCCceEEEecCCceEEEEECCCCC
Confidence 11122222 12222333444455544432 122211 1222223223 5678899999999999988 466
Q ss_pred EEEEE----eCCCCCcE-EEEE--cCCEEEEEeCCCeEEEEEcCCCcceEE--e--ccc--------cCccceEEEeeee
Q 011711 348 AVMTL----NGHTDAPM-SLLC--WDQYLLSCSLDNTIKVWIMTEEGNLEV--A--YTH--------NEDHGVLALGGLN 408 (479)
Q Consensus 348 ~~~~~----~~h~~~v~-~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~--~--~~~--------~~~~~~~~~~~~~ 408 (479)
...+. ....+++. .-.+ .+..++-.+.+|.|+--|+........ . ... ...-..+++
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~---- 245 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY---- 245 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE----
T ss_pred EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee----
Confidence 54332 12222222 2222 245666688899999998876542111 1 000 011122333
Q ss_pred CCCCCcEEEEE--eC-----C--CeEEEeecCCCceeeeeeccCceEEEEECCCc--eEEE-EcCCCcEEEEEeccCC
Q 011711 409 DPDGNPVLICS--CN-----D--DSVHLYELPSFMERGRIFSRREVRVIETGPDG--LFFT-GDGTGMLSVWKILAKP 474 (479)
Q Consensus 409 ~~~~~~~l~s~--~~-----d--g~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g--~l~s-g~~dg~v~vw~~~~~~ 474 (479)
++..+.+.+.- +. | ..|-++|+.+++.+.++..+.++.+|+++.+. +|++ ...++.|.+||..+++
T Consensus 246 ~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 246 HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 23332233222 11 1 14777899999999999988889999999988 6654 4668999999998764
No 361
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.83 E-value=0.0035 Score=53.88 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=70.5
Q ss_pred cCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCC
Q 011711 280 ANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT 356 (479)
Q Consensus 280 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 356 (479)
....+++|+.+|.|++|....... .......-...|.++... +.+..+++.||.|+.|++.-.+.+.....|.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~----~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGA----HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccch----HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 345899999999999998763221 112222233445555443 5689999999999999999988888877777
Q ss_pred -CCcEEEEEc--CCEEEEE--eCCCeEEEEEcCCC
Q 011711 357 -DAPMSLLCW--DQYLLSC--SLDNTIKVWIMTEE 386 (479)
Q Consensus 357 -~~v~~~~~~--~~~l~s~--s~dg~i~iwd~~~~ 386 (479)
.....+... +.++.++ |.|..++.|++...
T Consensus 145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 444433333 5667776 77777888877543
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.74 E-value=0.66 Score=45.53 Aligned_cols=181 Identities=15% Similarity=0.150 Sum_probs=96.6
Q ss_pred eEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCce------eE----EE-
Q 011711 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV------GS----LI- 240 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~------~~----~~- 240 (479)
.|+||+..-. ++..+.--.+.|.++.|+.+ ..|+....||.++++|+. |+. .+..+..+ .+ ..
T Consensus 62 ~I~iys~sG~--ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSGK--LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCCC--EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCccccccccccc
Confidence 5999997543 45555444489999999875 456677899999999986 333 33322221 11 11
Q ss_pred eCCCEEEEEcCCeEEEEEcCCCc-eE-Ee---cC-------CC--ccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcc
Q 011711 241 CEGPWVFVGMPNVVKAWHIESSA-EF-SL---DG-------PV--GEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPF 306 (479)
Q Consensus 241 ~~~~~l~~~~~~~i~v~~~~~~~-~~-~~---~~-------~~--~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 306 (479)
..+.+++...++.+.+.+-.... .. .. .. .. ..+..+.......+....++.+.+.+-..-
T Consensus 136 ~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----- 210 (410)
T PF04841_consen 136 YKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----- 210 (410)
T ss_pred CCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-----
Confidence 11223333344444333222211 10 00 00 00 001011111123333444455554442211
Q ss_pred cceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEEeCC-CCCcEEEEEcCC
Q 011711 307 QLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH-TDAPMSLLCWDQ 367 (479)
Q Consensus 307 ~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~ 367 (479)
..+. ..+++..|+++ +++++.-..+|.+.+.+.+-.+.+..+... ......+.|.|+
T Consensus 211 ---~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 211 ---KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred ---cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 0011 24578888886 888888889999999887766666666644 344566766654
No 363
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.011 Score=61.63 Aligned_cols=109 Identities=19% Similarity=0.306 Sum_probs=82.5
Q ss_pred CCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCC
Q 011711 269 GPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL 346 (479)
Q Consensus 269 ~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~ 346 (479)
.....+.+.+.-...++.|+..|.+...|+..+- .+...-..-..+|++++|+ |..++.|-.+|.|.+||+..+
T Consensus 87 ~~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL----~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 87 DIAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNL----GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred CCCcceeeeeeeeeeEEEEcCchhhhhhhhhccc----chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 4455566666666789999999999999987652 1122223346799999997 888999999999999999999
Q ss_pred cEEEEEeCCCCCcEEEEEc-----CCEEEEEeCCCeEEEEEc
Q 011711 347 EAVMTLNGHTDAPMSLLCW-----DQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 347 ~~~~~~~~h~~~v~~~~~~-----~~~l~s~s~dg~i~iwd~ 383 (479)
+.++.+..|..+...+.+. +..++++...|. +|.+
T Consensus 163 k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 9999998887776666554 346778877775 5543
No 364
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.66 E-value=0.25 Score=50.58 Aligned_cols=211 Identities=18% Similarity=0.240 Sum_probs=121.4
Q ss_pred CeEEEeecCCC-ceeeEEEecccccEEEEEeCCCCCEEEEEeCC------CcEEEEECCCCceEEEEecCCc---eeEEE
Q 011711 171 RFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD------GTVQLWDCHTGQSASVINLGAE---VGSLI 240 (479)
Q Consensus 171 ~~i~vw~~~~~-~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D------g~v~vwd~~~~~~~~~~~~~~~---~~~~~ 240 (479)
..+..||..++ +..+..+..... -.+++. -++...++|+.| .++..||..+++-...-+.... .....
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC-RVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc-cccEEE-ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 57888888776 444444443222 333333 346788888888 3677889888875543333222 22233
Q ss_pred eCCCEEEEE-cC-----CeEEEEEcCCCceEEecC---CCccEEEEEEcCCEEEEEeCCC------cEEEEEccCCCCCc
Q 011711 241 CEGPWVFVG-MP-----NVVKAWHIESSAEFSLDG---PVGEVYSMVVANEMLFAGAQDG------NILVWKGIPNTQNP 305 (479)
Q Consensus 241 ~~~~~l~~~-~~-----~~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~~l~~g~~dg------~i~iwd~~~~~~~~ 305 (479)
.+|.+.++| .+ +++-.||..+.+-..... .....-...+.+.+.++|+.++ ++..||..++.
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--- 455 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--- 455 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc---
Confidence 466666555 34 368888888876433221 2223333344455777777554 46788877765
Q ss_pred ccceeeecCCCCCeEEEEEcCCEEEEEeCCCe-----EEEEECCCCcEEEE--EeCCCCCcEEEEEcCCEEEEEeCCC--
Q 011711 306 FQLAALLKGHTRPVTCLAVGGKRLYSGSMDNT-----IRVWDLDTLEAVMT--LNGHTDAPMSLLCWDQYLLSCSLDN-- 376 (479)
Q Consensus 306 ~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~-----I~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~dg-- 376 (479)
+.....+..-.........++...+.|+.|+. |..||..+.+-... +......+-.....+...+.|+.||
T Consensus 456 W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 456 WTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN 535 (571)
T ss_pred eeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCcc
Confidence 33344344333444455567888888888773 77888887654332 2323333334445577778888776
Q ss_pred ---eEEEEEcCCC
Q 011711 377 ---TIKVWIMTEE 386 (479)
Q Consensus 377 ---~i~iwd~~~~ 386 (479)
+|..||..+.
T Consensus 536 ~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 536 NLNTVECYDPETD 548 (571)
T ss_pred ccceeEEcCCCCC
Confidence 3555655443
No 365
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.66 E-value=0.39 Score=41.79 Aligned_cols=196 Identities=13% Similarity=0.113 Sum_probs=109.9
Q ss_pred CCCeEEEeecCCCceeeEEEecccccEEEEEeCCCC---CEEEEEeCCCcEEEEECC--CCceEEEEe-cC-------Cc
Q 011711 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRS---DKLYSGSRDGTVQLWDCH--TGQSASVIN-LG-------AE 235 (479)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~---~~l~s~s~Dg~v~vwd~~--~~~~~~~~~-~~-------~~ 235 (479)
..+.|+-||..+..-....+++. ++.++.+.-.+ .+.+.++..-.|--||-. .-...+++. .+ ..
T Consensus 35 ~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~N 112 (310)
T KOG4499|consen 35 EAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLN 112 (310)
T ss_pred ccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccc
Confidence 34566668887763333344432 24455553333 345555554455667733 222333311 11 11
Q ss_pred eeEEEeCCCEEEEEc----------CCeEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEE--ccC
Q 011711 236 VGSLICEGPWVFVGM----------PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWK--GIP 300 (479)
Q Consensus 236 ~~~~~~~~~~l~~~~----------~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd--~~~ 300 (479)
-..+.++|++..... .+.++.|-......... ..-.--+.++|+.+ +.++-+.+-+|..|| ..+
T Consensus 113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~t 191 (310)
T KOG4499|consen 113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPT 191 (310)
T ss_pred cCccCCCCceeeeeeccccccccccccEEEEeccCCCceeee-hhccCCccccccccCcEEEEEccCceEEeeeecCCCc
Confidence 223446777744332 24555555443332211 12233356777765 566667788887787 445
Q ss_pred CCCCcccceeeecCC----CCCeEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCC
Q 011711 301 NTQNPFQLAALLKGH----TRPVTCLAV--GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQ 367 (479)
Q Consensus 301 ~~~~~~~~~~~~~~h----~~~i~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 367 (479)
+.....+.+..++.. ...--.+++ +|++.++.-..++|...|+.+|+.+.++......+++.+|-|+
T Consensus 192 G~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 192 GDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 443322222222221 111123444 4888888889999999999999999999999999999999864
No 366
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.54 E-value=0.56 Score=42.19 Aligned_cols=166 Identities=10% Similarity=0.019 Sum_probs=105.2
Q ss_pred eeeEEEeccc-ccEEEEEeCCCCCEEEEEeCCC--cEEEEECCCCceEEEEecCCcee--EEEe-CCC-EEEEEcCCeEE
Q 011711 183 TMLAKLEGHK-KAVSGIALPLRSDKLYSGSRDG--TVQLWDCHTGQSASVINLGAEVG--SLIC-EGP-WVFVGMPNVVK 255 (479)
Q Consensus 183 ~~~~~~~~H~-~~V~~l~~s~~~~~l~s~s~Dg--~v~vwd~~~~~~~~~~~~~~~~~--~~~~-~~~-~l~~~~~~~i~ 255 (479)
+.+.++.... .-...+.|..++.++-+.+.-| .|+.+|+.+++.......+.... .+.. +++ +..+=.++...
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence 4555654222 3356788877888888888776 79999999999988888776532 2222 333 33344788999
Q ss_pred EEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecC--CC---CCeEEEEEc-CCEE
Q 011711 256 AWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKG--HT---RPVTCLAVG-GKRL 329 (479)
Q Consensus 256 v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~--h~---~~i~~l~~~-~~~l 329 (479)
+||..+-+........++=..++..++.|+....+..++.+|..+-. ....+.- .. ..++.|.+- |...
T Consensus 114 ~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~-----~~~~i~V~~~g~pv~~LNELE~i~G~Iy 188 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFK-----EVRTIQVTDNGRPVSNLNELEYINGKIY 188 (264)
T ss_dssp EEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-S-----EEEEEE-EETTEE---EEEEEEETTEEE
T ss_pred EEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccc-----eEEEEEEEECCEECCCcEeEEEEcCEEE
Confidence 99999887765444556778888888888888888899999976533 2222221 22 234556664 5555
Q ss_pred EEEeCCCeEEEEECCCCcEEEEEe
Q 011711 330 YSGSMDNTIRVWDLDTLEAVMTLN 353 (479)
Q Consensus 330 ~sgs~dg~I~iwd~~~~~~~~~~~ 353 (479)
+=.-....|...|..+|+.+..+.
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEEEE
T ss_pred EEeCCCCeEEEEeCCCCeEEEEEE
Confidence 555677788899999999988763
No 367
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.45 E-value=0.64 Score=41.83 Aligned_cols=184 Identities=14% Similarity=0.034 Sum_probs=109.4
Q ss_pred ccEEEEEE-cCC-EEEEEeCCC--cEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEE-EEEeCCCeEEEEECCCC
Q 011711 272 GEVYSMVV-ANE-MLFAGAQDG--NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRL-YSGSMDNTIRVWDLDTL 346 (479)
Q Consensus 272 ~~v~~~~~-~~~-~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l-~sgs~dg~I~iwd~~~~ 346 (479)
.....+.+ .++ ++-+.+.-| .|+.+|+.+++.. ....+.. .-.--.++.-++.+ .---.++...+||..+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~---~~~~l~~-~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL---QSVPLPP-RYFGEGITILGDKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE---EEEE-TT-T--EEEEEEETTEEEEEESSSSEEEEEETTTT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE---EEEECCc-cccceeEEEECCEEEEEEecCCeEEEEccccc
Confidence 34556777 555 445555555 6888898887531 1122221 22223455544444 44457899999999999
Q ss_pred cEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEE
Q 011711 347 EAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVH 426 (479)
Q Consensus 347 ~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 426 (479)
+.+.++.-. ..-..++.+++.|+.......|+++|..+.+....+.........-.+.-.---+|. +.|-.=....|.
T Consensus 121 ~~~~~~~y~-~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~-IyANVW~td~I~ 198 (264)
T PF05096_consen 121 KKIGTFPYP-GEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGK-IYANVWQTDRIV 198 (264)
T ss_dssp EEEEEEE-S-SS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTE-EEEEETTSSEEE
T ss_pred eEEEEEecC-CcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCE-EEEEeCCCCeEE
Confidence 999988743 456788888888888888889999998877665555443322222111111113554 666666677788
Q ss_pred EeecCCCceeeeeec----------------cCceEEEEECCCc--eEEEEcC
Q 011711 427 LYELPSFMERGRIFS----------------RREVRVIETGPDG--LFFTGDG 461 (479)
Q Consensus 427 iwd~~~~~~~~~~~~----------------~~~v~~l~~s~~g--~l~sg~~ 461 (479)
..|..+++....+.. ..-.+.+++.|.. +++||=.
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 889999888776641 2358899998877 6777743
No 368
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.017 Score=56.92 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=62.2
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEE-EEEeCCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVS-GIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~-~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~ 229 (479)
.+-..+.-+.++.+.++|.+-+..+. ++.+.++.-|...++ +++|.|||+.||.|-.||+|++.|++++..+..
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 34445555678888888988888886 477888887888887 999999999999999999999999999988776
No 369
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.42 E-value=0.47 Score=45.59 Aligned_cols=195 Identities=17% Similarity=0.219 Sum_probs=96.3
Q ss_pred EEEEE-eCCCcEEEEEccCCCCCcccceeeecC---C-----CCCeEEEEE-cCCEEEEE--eC----CCeEEEEECCCC
Q 011711 283 MLFAG-AQDGNILVWKGIPNTQNPFQLAALLKG---H-----TRPVTCLAV-GGKRLYSG--SM----DNTIRVWDLDTL 346 (479)
Q Consensus 283 ~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~---h-----~~~i~~l~~-~~~~l~sg--s~----dg~I~iwd~~~~ 346 (479)
+|++. -.++.|+++|+.+....+ ++.+.++. + ..+-+.-+. +|+.++++ .. -|.+.+.|-++.
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P-~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKP-RLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS--EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred cEEeeeeccCcEEEEECCCCCCCC-ceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 55554 478899999998654432 23333332 1 111111122 36677764 22 346888898888
Q ss_pred cEEEEEeCCCC-CcEEEEEc----CCEEEEEe--------------------CCCeEEEEEcCCCcceEEeccccCccce
Q 011711 347 EAVMTLNGHTD-APMSLLCW----DQYLLSCS--------------------LDNTIKVWIMTEEGNLEVAYTHNEDHGV 401 (479)
Q Consensus 347 ~~~~~~~~h~~-~v~~~~~~----~~~l~s~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 401 (479)
+.......... ......++ .+.++|.. ...++.+||+.+.+.++.+....+....
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 88777764332 22222222 45666653 2467999999999888888776666667
Q ss_pred EEEeeeeCCCCCcEEEEEeCCCeEEEeec-CCCc----eeeeeec------------------cCceEEEEECCCc--eE
Q 011711 402 LALGGLNDPDGNPVLICSCNDDSVHLYEL-PSFM----ERGRIFS------------------RREVRVIETGPDG--LF 456 (479)
Q Consensus 402 ~~~~~~~~~~~~~~l~s~~~dg~v~iwd~-~~~~----~~~~~~~------------------~~~v~~l~~s~~g--~l 456 (479)
+.+.+..+|+...-++.+.-..+|..|-- +.++ .+..+.. ..-|+.+.+|.|. +.
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY 327 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY 327 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence 77888888887755555545555555533 3322 2222211 1347999999988 66
Q ss_pred EEEcCCCcEEEEEeccCCCCCC
Q 011711 457 FTGDGTGMLSVWKILAKPNAEM 478 (479)
Q Consensus 457 ~sg~~dg~v~vw~~~~~~~~~i 478 (479)
+++=.+|.|+.||+++..++++
T Consensus 328 vs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 328 VSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp EEETTTTEEEEEE-SSTTS-EE
T ss_pred EEcccCCcEEEEecCCCCCCcE
Confidence 7788899999999998777643
No 370
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.68 Score=41.80 Aligned_cols=199 Identities=16% Similarity=0.137 Sum_probs=127.8
Q ss_pred EEeccc-ccEEEEEeCCCCCEEEEEeCCCcEEEEECC---CCceEEEEecCCceeEEEeCCCEEEEE-cCCeEEEEEcCC
Q 011711 187 KLEGHK-KAVSGIALPLRSDKLYSGSRDGTVQLWDCH---TGQSASVINLGAEVGSLICEGPWVFVG-MPNVVKAWHIES 261 (479)
Q Consensus 187 ~~~~H~-~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~v~~~~~ 261 (479)
.+.+|- ..|..+....+-.++..|-.=-..-+|+.. ....+..+........+...+++++.. .+..+++.|+.+
T Consensus 36 ~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~ 115 (370)
T COG5276 36 AYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDIST 115 (370)
T ss_pred EEeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEecccEEEEEcCCCceEEEeccC
Confidence 455665 566666654333333333221223455554 223445555555666666677776654 778899999988
Q ss_pred CceEEec---CCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeE
Q 011711 262 SAEFSLD---GPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTI 338 (479)
Q Consensus 262 ~~~~~~~---~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I 338 (479)
....++. ...+.-+++..++++..++..|.-..+.|+...+. .++..........-..++.+|++-+.+..|+-+
T Consensus 116 P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpss--P~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL 193 (370)
T COG5276 116 PDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSS--PQLAGRYALPGGDTHDVAISGNYAYVAWRDGGL 193 (370)
T ss_pred CCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCC--ceeeeeeccCCCCceeEEEecCeEEEEEeCCCe
Confidence 7654433 23366788889999988888777788999987654 233444444455557788899999999999999
Q ss_pred EEEECCCCc---EEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcc
Q 011711 339 RVWDLDTLE---AVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGN 388 (479)
Q Consensus 339 ~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 388 (479)
.+-|+.... .+.... ....+.++..++++....-.+--+.+-|......
T Consensus 194 ~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ss 245 (370)
T COG5276 194 TIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSS 245 (370)
T ss_pred EEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcccceEEEecCCCCC
Confidence 999997643 222222 2235777777777666555555677777766553
No 371
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.71 Score=41.70 Aligned_cols=199 Identities=11% Similarity=0.119 Sum_probs=121.8
Q ss_pred CCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCC--
Q 011711 269 GPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTL-- 346 (479)
Q Consensus 269 ~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~-- 346 (479)
...+-+..+.++.++...+..+.-+++.|+.+.... ..+..+. -.+--.++..+|++..++..|.-..+.|+.+.
T Consensus 84 ~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP--~~~~~ln-t~gyaygv~vsGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 84 NARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSP--TLIGFLN-TDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred ehhhhhheeEecccEEEEEcCCCceEEEeccCCCCc--ceecccc-CCceEEEEEecCCEEEEeeccCcEEEEECCCCCC
Confidence 345566788889999999999999999999887542 1111121 22445677888999999997777788888753
Q ss_pred -cEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeE
Q 011711 347 -EAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSV 425 (479)
Q Consensus 347 -~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v 425 (479)
++...+.........++.+|++-..+..|+-+.+-|+.+......+...+......... .+++- .+++-. +.-+
T Consensus 161 P~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~--vsdnr--~y~vvy-~egv 235 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVS--VSDNR--AYLVVY-DEGV 235 (370)
T ss_pred ceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEE--ecCCe--eEEEEc-ccce
Confidence 34445555555557888899999999999999999998876654444333322333332 12332 333333 4446
Q ss_pred EEeecCCCceeeeeec---cCc--eEEEEECCCceEEEEcCCCcEEEEEeccCCCC
Q 011711 426 HLYELPSFMERGRIFS---RRE--VRVIETGPDGLFFTGDGTGMLSVWKILAKPNA 476 (479)
Q Consensus 426 ~iwd~~~~~~~~~~~~---~~~--v~~l~~s~~g~l~sg~~dg~v~vw~~~~~~~~ 476 (479)
.+-|..+.+....+.. ..+ ++.+..+.. +......+.-+.+-|+++.+.+
T Consensus 236 livd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~-~~Yvadga~gl~~idisnp~sp 290 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYETSNPVSISTVPVSGE-YAYVADGAKGLPIIDISNPPSP 290 (370)
T ss_pred EEEecCCCCCceEeeccccCCcccccceecccc-eeeeeccccCceeEeccCCCCC
Confidence 6777766554333322 222 222344332 3333444445566666665544
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.37 E-value=0.87 Score=42.54 Aligned_cols=195 Identities=13% Similarity=0.012 Sum_probs=111.7
Q ss_pred eCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC--------cee
Q 011711 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA--------EVG 237 (479)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~--------~~~ 237 (479)
+.-..+.|+-|+..++....... .+.+.++..-..+..|+++.. -+.+++.+++.....+.... .-.
T Consensus 42 ~DI~~~~i~r~~~~~g~~~~~~~---p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~ 116 (307)
T COG3386 42 VDILGGRIHRLDPETGKKRVFPS---PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDG 116 (307)
T ss_pred EeCCCCeEEEecCCcCceEEEEC---CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCce
Confidence 44455788888887663333322 334455555445555665543 46777776666533322111 122
Q ss_pred EEEeCCCEEEEEcC------------CeEEEEEcCCCceEEecCCCccEEEEEEcCC--E-EEEEeCCCcEEEEEccC--
Q 011711 238 SLICEGPWVFVGMP------------NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--M-LFAGAQDGNILVWKGIP-- 300 (479)
Q Consensus 238 ~~~~~~~~l~~~~~------------~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~-l~~g~~dg~i~iwd~~~-- 300 (479)
.+.++|.+.+.... +.+..++...........+-..-+.++|+|+ . .++=+..+.|..|++..
T Consensus 117 ~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 117 VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred eEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 34457777766533 2344444433333334444667788999998 4 44445568898888763
Q ss_pred CCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC-eEEEEECCCCcEEEEEeCCCCCcEEEEEcC
Q 011711 301 NTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN-TIRVWDLDTLEAVMTLNGHTDAPMSLLCWD 366 (479)
Q Consensus 301 ~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 366 (479)
................+..-.++.+ |++.+++..+| .|.+|+.+ ++++..+..+...+.+++|-|
T Consensus 197 g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 197 GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 1111111122233344555566665 55554444444 99999998 999999988877788887775
No 373
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.37 E-value=1.1 Score=43.67 Aligned_cols=259 Identities=14% Similarity=0.207 Sum_probs=140.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-----eEEEEecCCceeEEEe-------CCCEEEEEcCCeEEEEEcCCCc-------
Q 011711 203 RSDKLYSGSRDGTVQLWDCHTGQ-----SASVINLGAEVGSLIC-------EGPWVFVGMPNVVKAWHIESSA------- 263 (479)
Q Consensus 203 ~~~~l~s~s~Dg~v~vwd~~~~~-----~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~i~v~~~~~~~------- 263 (479)
+...++.||..|.++|++...+. .+-+.+...++..+.. ....|++-....+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 45689999999999999986544 5556677778777664 3457788899999999883221
Q ss_pred eEE---ecCCC--ccEEEEEEc-------CCEEEEEeCCCcEEEEEccCCCCCcccceeeecC--CCCCeEEEEE--cCC
Q 011711 264 EFS---LDGPV--GEVYSMVVA-------NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKG--HTRPVTCLAV--GGK 327 (479)
Q Consensus 264 ~~~---~~~~~--~~v~~~~~~-------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~--h~~~i~~l~~--~~~ 327 (479)
... ...|. .....++.. .+++.+-+.||.+.+|+-+.-. ....+.. ..+| +.+ .-+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-----f~~~lp~~llPgP---l~Y~~~tD 187 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-----FSRFLPDFLLPGP---LCYCPRTD 187 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-----EEEEcCCCCCCcC---eEEeecCC
Confidence 111 11111 122223221 2489999999999999965532 1122221 2333 333 366
Q ss_pred EEEEEeCCCeEEEEECCCC--------------------c---EEEEEeCCCCCcEEEEEc-----CCEEEEEeCCCeEE
Q 011711 328 RLYSGSMDNTIRVWDLDTL--------------------E---AVMTLNGHTDAPMSLLCW-----DQYLLSCSLDNTIK 379 (479)
Q Consensus 328 ~l~sgs~dg~I~iwd~~~~--------------------~---~~~~~~~h~~~v~~~~~~-----~~~l~s~s~dg~i~ 379 (479)
.|++++.+..+..|..... + +..++.. .+.+..+... ...++.-++ ..+.
T Consensus 188 sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLge-r~Lf 265 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGE-RSLF 265 (418)
T ss_pred EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEec-ceEE
Confidence 7888888888887764210 0 0111111 1122222221 112222222 2344
Q ss_pred EEEcCCCcceEEeccccCccceEE-Eee--eeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECC----
Q 011711 380 VWIMTEEGNLEVAYTHNEDHGVLA-LGG--LNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGP---- 452 (479)
Q Consensus 380 iwd~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~---- 452 (479)
+.+- .+.+...........++. +.. ...+.....++.++.++++.||.=.+ ............++....
T Consensus 266 ~l~~--~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PVal~v~~~~~~ 341 (418)
T PF14727_consen 266 CLKD--NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPVALSVANFNGL 341 (418)
T ss_pred EEcC--CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCEEEEecccCCC
Confidence 4433 223333333322212211 111 12233333577788999999986443 333333233333444443
Q ss_pred CceEEEEcCCCcEEEEEeccCCC
Q 011711 453 DGLFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 453 ~g~l~sg~~dg~v~vw~~~~~~~ 475 (479)
+|.|++-+.+|.+.+-=+-+++.
T Consensus 342 ~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 342 KGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred CceEEEEcCCCcEEEEEeCCCCc
Confidence 55999999999999877766553
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.07 Score=51.68 Aligned_cols=140 Identities=13% Similarity=0.135 Sum_probs=87.4
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEEeCCCC-CcEEEEEc-------CCEEEEEeCCCeEEEEEcCCCcc--eEEeccccC
Q 011711 328 RLYSGSMDNTIRVWDLDTLEAVMTLNGHTD-APMSLLCW-------DQYLLSCSLDNTIKVWIMTEEGN--LEVAYTHNE 397 (479)
Q Consensus 328 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-~v~~~~~~-------~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~ 397 (479)
++.++.....++-.|+..|+.+.++.-+.. .+..+..+ ...-+.|-.|..|.-||.+-... +.....+.-
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 455677778899999999999999988877 33333333 12344566688899999875443 112222211
Q ss_pred ccceEEEeeee-CCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 398 DHGVLALGGLN-DPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 398 ~~~~~~~~~~~-~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
.....|.+.. ..+| ++++|+.+|.|++||--.......++. ..+|..+..+.+| .|++. .+..+.+-++.
T Consensus 428 -~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 -STKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred -ccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 1112222221 2344 689999999999999833223333333 7889999999999 44443 34556666543
No 375
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.072 Score=55.91 Aligned_cols=74 Identities=22% Similarity=0.209 Sum_probs=57.1
Q ss_pred cCCeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 011711 160 LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (479)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 233 (479)
...-++.|...|.+-..|......+...=+.-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 34456677777888887776543333333334689999999999999999999999999999999988887644
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.29 E-value=0.014 Score=34.39 Aligned_cols=35 Identities=43% Similarity=0.557 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEE
Q 011711 348 AVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWI 382 (479)
Q Consensus 348 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd 382 (479)
++..+..|...+.++.+. +.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344444555555555554 34555555555555553
No 377
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.22 E-value=0.88 Score=41.00 Aligned_cols=212 Identities=13% Similarity=0.108 Sum_probs=97.8
Q ss_pred EEEecccccEEEEEeCCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCce
Q 011711 186 AKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (479)
Q Consensus 186 ~~~~~H~~~V~~l~~s~~~~-~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~ 264 (479)
+.+.+-...+..|+|+|+.+ ++++....+.|...+. +|+.++.+....
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g------------------------------ 63 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG------------------------------ 63 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS------------------------------
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC------------------------------
Confidence 34556666799999999866 4555566778877786 477777665321
Q ss_pred EEecCCCccEEEEEEcCC-EEEEEe-CCCcEEEEEccCCCCCc-ccceee-----ecCCCCCeEEEEEc--CCEEEEEeC
Q 011711 265 FSLDGPVGEVYSMVVANE-MLFAGA-QDGNILVWKGIPNTQNP-FQLAAL-----LKGHTRPVTCLAVG--GKRLYSGSM 334 (479)
Q Consensus 265 ~~~~~~~~~v~~~~~~~~-~l~~g~-~dg~i~iwd~~~~~~~~-~~~~~~-----~~~h~~~i~~l~~~--~~~l~sgs~ 334 (479)
.+..-.+++.++ .++... .++.+.++++....... ...... ...+...+-.++|+ ++.|+++-+
T Consensus 64 ------~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE 137 (248)
T PF06977_consen 64 ------FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE 137 (248)
T ss_dssp -------SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE
T ss_pred ------CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC
Confidence 234456666555 444444 47888888874432110 000011 11344567788886 566666654
Q ss_pred CCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCc
Q 011711 335 DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNP 414 (479)
Q Consensus 335 dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (479)
..-..+|.++... .+..+.+.+..... ...........+.+ +|....
T Consensus 138 ~~P~~l~~~~~~~--------------------------~~~~~~~~~~~~~~---~~~~~~~d~S~l~~----~p~t~~ 184 (248)
T PF06977_consen 138 RKPKRLYEVNGFP--------------------------GGFDLFVSDDQDLD---DDKLFVRDLSGLSY----DPRTGH 184 (248)
T ss_dssp SSSEEEEEEESTT---------------------------SS--EEEE-HHHH----HT--SS---EEEE----ETTTTE
T ss_pred CCChhhEEEcccc--------------------------Cccceeeccccccc---cccceeccccceEE----cCCCCe
Confidence 4444444332211 01111111110000 00001111233333 365555
Q ss_pred EEEEEeCCCeEEEeecCCCceeeeeecc----------CceEEEEECCCceEEEEcCCCcEEEE
Q 011711 415 VLICSCNDDSVHLYELPSFMERGRIFSR----------REVRVIETGPDGLFFTGDGTGMLSVW 468 (479)
Q Consensus 415 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~----------~~v~~l~~s~~g~l~sg~~dg~v~vw 468 (479)
+++.+..+..|..+| .+++.+..+.-. ...-.|++.++|.|...++-...++|
T Consensus 185 lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 185 LLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred EEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 777777888888888 455555544421 35889999999955555565555544
No 378
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.18 E-value=0.018 Score=36.60 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=30.0
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCce
Q 011711 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS 226 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~ 226 (479)
...|..++|+|..++||.++.||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4543
No 379
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.015 Score=57.26 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=57.7
Q ss_pred eeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceE-EEEECCCc-eEEEEcCCCcEEEEEeccCCC
Q 011711 406 GLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVR-VIETGPDG-LFFTGDGTGMLSVWKILAKPN 475 (479)
Q Consensus 406 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~-~l~~s~~g-~l~sg~~dg~v~vw~~~~~~~ 475 (479)
..|+|.-. ++|.+..+|.|.+..++ .+.+..+. +...++ +++|.||| .|+.|-.||+|++-|+.++..
T Consensus 26 ~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 26 IEWNPKMD-LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred EEEcCccc-hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 34567766 89999999999999988 77777777 666666 99999999 999999999999999988653
No 380
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.14 E-value=2.3 Score=45.11 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=67.8
Q ss_pred EEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCcc---------EEEEE------------------EcCCEEEEEeCC
Q 011711 238 SLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGE---------VYSMV------------------VANEMLFAGAQD 290 (479)
Q Consensus 238 ~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~---------v~~~~------------------~~~~~l~~g~~d 290 (479)
.+..++.+.+++.++.|...|..+++++-....... ...+. ...+.++.++.|
T Consensus 190 Plvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~D 269 (764)
T TIGR03074 190 PLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSD 269 (764)
T ss_pred CEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCC
Confidence 344466666666778888888888877532211111 11111 123388899999
Q ss_pred CcEEEEEccCCCCCcccceeeec------------CCCC---CeEE-EEEcCCEEEEEeC----------CCeEEEEECC
Q 011711 291 GNILVWKGIPNTQNPFQLAALLK------------GHTR---PVTC-LAVGGKRLYSGSM----------DNTIRVWDLD 344 (479)
Q Consensus 291 g~i~iwd~~~~~~~~~~~~~~~~------------~h~~---~i~~-l~~~~~~l~sgs~----------dg~I~iwd~~ 344 (479)
+.+.-.|..+++.. ..+. .... .+++ -.+.++.+++|+. +|.|+-+|.+
T Consensus 270 g~LiALDA~TGk~~-----W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~ 344 (764)
T TIGR03074 270 ARLIALDADTGKLC-----EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVN 344 (764)
T ss_pred CeEEEEECCCCCEE-----EEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECC
Confidence 99999999887642 1111 0000 0111 1122667777753 6899999999
Q ss_pred CCcEEEEEeC
Q 011711 345 TLEAVMTLNG 354 (479)
Q Consensus 345 ~~~~~~~~~~ 354 (479)
+|+.+..+..
T Consensus 345 TGkl~W~~~~ 354 (764)
T TIGR03074 345 TGALVWAWDP 354 (764)
T ss_pred CCcEeeEEec
Confidence 9999988863
No 381
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.95 E-value=0.32 Score=38.52 Aligned_cols=103 Identities=15% Similarity=0.177 Sum_probs=77.2
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECC--------CCceEEEEecCCceeEEEe-------CCCEEEEEcCCeEEEEEcCCC
Q 011711 198 IALPLRSDKLYSGSRDGTVQLWDCH--------TGQSASVINLGAEVGSLIC-------EGPWVFVGMPNVVKAWHIESS 262 (479)
Q Consensus 198 l~~s~~~~~l~s~s~Dg~v~vwd~~--------~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~i~v~~~~~~ 262 (479)
-.|.....-|+.++.-|.|.|++.. ....+..+..+..+.++.. ....|+.|....+..||+..+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N 83 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN 83 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence 3555556678888888999999876 3446778888888888764 466899999999999999999
Q ss_pred ceEEecCCCccEEEEEEc-----CCEEEEEeCCCcEEEEEccC
Q 011711 263 AEFSLDGPVGEVYSMVVA-----NEMLFAGAQDGNILVWKGIP 300 (479)
Q Consensus 263 ~~~~~~~~~~~v~~~~~~-----~~~l~~g~~dg~i~iwd~~~ 300 (479)
..+-.+.-...|+++.+. +..++..+.+..|.-||...
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 887666667778888763 23455555566777777544
No 382
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.91 E-value=0.073 Score=54.37 Aligned_cols=67 Identities=21% Similarity=0.268 Sum_probs=56.7
Q ss_pred EEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCC
Q 011711 274 VYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT 345 (479)
Q Consensus 274 v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~ 345 (479)
+.+++|+|. .|+.|-.-|.+.+|...+.. .......|..+|..+.|+ |+.++++..-|.+.+|....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-----~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-----THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCce-----eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 567999999 78889899999999976643 244556799999999997 99999999999999998763
No 383
>PHA03098 kelch-like protein; Provisional
Probab=95.90 E-value=0.5 Score=48.41 Aligned_cols=184 Identities=10% Similarity=0.057 Sum_probs=86.7
Q ss_pred cCCEEEEEeCCC------cEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCC-----CeEEEEECCCCcE
Q 011711 280 ANEMLFAGAQDG------NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD-----NTIRVWDLDTLEA 348 (479)
Q Consensus 280 ~~~~l~~g~~dg------~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~ 348 (479)
.+..++.|+.++ .+..||..++.- .....+.........+..++..++.|+.+ ..+..||..+.+-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W---~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW---NKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee---eECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 333556665432 467788766542 22222222222333445567777788765 3577888876543
Q ss_pred EEE--EeCCCCCcEEEEEcCCEEEEEeCC------CeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEe
Q 011711 349 VMT--LNGHTDAPMSLLCWDQYLLSCSLD------NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (479)
Q Consensus 349 ~~~--~~~h~~~v~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 420 (479)
... +.............+...+.|+.+ ..+..||..+.+-. ............... ..++. +++.|+
T Consensus 371 ~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~p~~r~~~~~~---~~~~~-iyv~GG 445 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS-KGSPLPISHYGGCAI---YHDGK-IYVIGG 445 (534)
T ss_pred eeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee-ecCCCCccccCceEE---EECCE-EEEECC
Confidence 221 111111122233346666666632 45788888764321 111111111111111 13444 666665
Q ss_pred CC--------CeEEEeecCCCce--eeeeeccCceEEEEECCCc-eEEEEcCC-----CcEEEEEecc
Q 011711 421 ND--------DSVHLYELPSFME--RGRIFSRREVRVIETGPDG-LFFTGDGT-----GMLSVWKILA 472 (479)
Q Consensus 421 ~d--------g~v~iwd~~~~~~--~~~~~~~~~v~~l~~s~~g-~l~sg~~d-----g~v~vw~~~~ 472 (479)
.+ ..+.+||..+.+- +..+.....-.+++.. ++ .++.||.+ ..|.+||..+
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 43 2388888876432 2212111111122222 45 66677654 4677777655
No 384
>PHA03098 kelch-like protein; Provisional
Probab=95.77 E-value=1.1 Score=45.78 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=69.9
Q ss_pred EEcCCEEEEEeCC-----CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCC------CeEEEEECCCC
Q 011711 278 VVANEMLFAGAQD-----GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD------NTIRVWDLDTL 346 (479)
Q Consensus 278 ~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~d------g~I~iwd~~~~ 346 (479)
...+..++.|+.+ ..+..||..++. +.....+............++...+.|+.+ ..+..||+.+.
T Consensus 340 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 340 VFNNRIYVIGGIYNSISLNTVESWKPGESK---WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred EECCEEEEEeCCCCCEecceEEEEcCCCCc---eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 3334466666654 346778876654 222222221122222333457777777632 45888998875
Q ss_pred cEEEE--EeCCCCCcEEEEEcCCEEEEEeCC--------CeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEE
Q 011711 347 EAVMT--LNGHTDAPMSLLCWDQYLLSCSLD--------NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVL 416 (479)
Q Consensus 347 ~~~~~--~~~h~~~v~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 416 (479)
+-... +.........+...+..++.|+.+ ..+.+||..+.+-.. ......+........ .+++ ++
T Consensus 417 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~r~~~~~~~---~~~~-iy 491 (534)
T PHA03098 417 KWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE-LSSLNFPRINASLCI---FNNK-IY 491 (534)
T ss_pred eeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceee-CCCCCcccccceEEE---ECCE-EE
Confidence 43221 111111122233345555666543 237888887653221 111111111111111 2454 66
Q ss_pred EEEeCC-----CeEEEeecCCC
Q 011711 417 ICSCND-----DSVHLYELPSF 433 (479)
Q Consensus 417 ~s~~~d-----g~v~iwd~~~~ 433 (479)
+.|+.+ +.|.+||..+.
T Consensus 492 v~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 492 VVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EEcCCcCCcccceeEEEeCCCC
Confidence 666654 46788887664
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.77 E-value=0.031 Score=35.57 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=27.7
Q ss_pred cCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 442 RREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 442 ~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
...|..++|+|.. +|+.+..||.|.+++++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 5679999999999 99999999999999983
No 386
>PHA02790 Kelch-like protein; Provisional
Probab=95.75 E-value=0.84 Score=45.96 Aligned_cols=177 Identities=11% Similarity=0.083 Sum_probs=88.9
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCceEEEEecCCc---eeEEEeCCCEEEEEcC---CeEEEEEcCCCceEEecC--
Q 011711 203 RSDKLYSGSRDG-----TVQLWDCHTGQSASVINLGAE---VGSLICEGPWVFVGMP---NVVKAWHIESSAEFSLDG-- 269 (479)
Q Consensus 203 ~~~~l~s~s~Dg-----~v~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~---~~i~v~~~~~~~~~~~~~-- 269 (479)
++..++.|+.++ ++..||..+++....-....+ ......++.+.++|+. ..+..||..++.-.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 355566676543 567788887765443333221 2223346666666542 467888877665433221
Q ss_pred -CCccEEEEEEcCCEEEEEeCCC---cEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCC
Q 011711 270 -PVGEVYSMVVANEMLFAGAQDG---NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDT 345 (479)
Q Consensus 270 -~~~~v~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~ 345 (479)
...........+...+.|+.++ .+..||..++. +.....+.........+.+++...+.| |.+.+||.++
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~---W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ---WQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE---EEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCC
Confidence 1222223334444666666543 46788876653 332222222222223334456666666 4577899877
Q ss_pred CcEEE--EEeCCCCCcEEEEEcCCEEEEEeCC-----CeEEEEEcCC
Q 011711 346 LEAVM--TLNGHTDAPMSLLCWDQYLLSCSLD-----NTIKVWIMTE 385 (479)
Q Consensus 346 ~~~~~--~~~~h~~~v~~~~~~~~~l~s~s~d-----g~i~iwd~~~ 385 (479)
.+-.. .+.............++..+.|+.+ ..+..||..+
T Consensus 425 ~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 425 NTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence 54322 2221122233334446666777654 2355555543
No 387
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.75 E-value=3.3 Score=43.76 Aligned_cols=252 Identities=14% Similarity=0.101 Sum_probs=136.8
Q ss_pred CEEEEEeCCCcEEEEECCCCc--eEEEEecCCceeEEEeCC-C-EEEEE------------cC---CeEEEEEcCCCceE
Q 011711 205 DKLYSGSRDGTVQLWDCHTGQ--SASVINLGAEVGSLICEG-P-WVFVG------------MP---NVVKAWHIESSAEF 265 (479)
Q Consensus 205 ~~l~s~s~Dg~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~-~-~l~~~------------~~---~~i~v~~~~~~~~~ 265 (479)
..|+++.. +.+++-.++.-+ .+++++.+.....+.... . .+.+. .. ..++++|-++-+.+
T Consensus 685 d~l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 685 DSLASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred ceEEEecC-CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 45666655 457776655433 234455555554444432 1 11111 11 24677777777665
Q ss_pred EecCC--C---ccEEEEEEcCC---EEEEEeC----------CCcEEEEEccCCCCCcccceeeecCCCCCeEEEE-EcC
Q 011711 266 SLDGP--V---GEVYSMVVANE---MLFAGAQ----------DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLA-VGG 326 (479)
Q Consensus 266 ~~~~~--~---~~v~~~~~~~~---~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~-~~~ 326 (479)
..... . ..+.+..+.++ ++++|+. .|.|.+|.+..... .+.+.... -++.+.++. |+|
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~--L~~v~e~~-v~Gav~aL~~fng 840 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS--LELVAETV-VKGAVYALVEFNG 840 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc--eeeeeeee-eccceeehhhhCC
Confidence 43321 1 23444446655 7777763 58888888877222 23333222 234444444 346
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCc-ceEEecc--ccCccce
Q 011711 327 KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG-NLEVAYT--HNEDHGV 401 (479)
Q Consensus 327 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~--~~~~~~~ 401 (479)
+++|. -+..|++|++.+.+.++.-..|...+..+... ++.++.|..-+.+.+-..+..+ ....... +......
T Consensus 841 kllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmta 918 (1096)
T KOG1897|consen 841 KLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTA 918 (1096)
T ss_pred eEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceee
Confidence 65553 45789999999987777777777777666655 9999999998888776655443 1222222 2222222
Q ss_pred EEEeeeeCCCCCcEEEEEeCCCeEEEeecCC-------------------CceeeeeeccCceEE--EEECCCc-eEEEE
Q 011711 402 LALGGLNDPDGNPVLICSCNDDSVHLYELPS-------------------FMERGRIFSRREVRV--IETGPDG-LFFTG 459 (479)
Q Consensus 402 ~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-------------------~~~~~~~~~~~~v~~--l~~s~~g-~l~sg 459 (479)
..+ -++. .++.+..+|.+.+-..++ ++.+..+.|..-|.. -..+|-+ .++.|
T Consensus 919 vei-----l~~d-~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfg 992 (1096)
T KOG1897|consen 919 VEI-----LDDD-TYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFG 992 (1096)
T ss_pred EEE-----ecCc-eEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCCCcEEEE
Confidence 222 3333 344455677776665443 122222222222333 1334444 78888
Q ss_pred cCCCcEEEE
Q 011711 460 DGTGMLSVW 468 (479)
Q Consensus 460 ~~dg~v~vw 468 (479)
..+|.|-+-
T Consensus 993 Tv~GsIG~i 1001 (1096)
T KOG1897|consen 993 TVNGSIGII 1001 (1096)
T ss_pred EccceEEEE
Confidence 888888654
No 388
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.61 E-value=2.6 Score=41.53 Aligned_cols=240 Identities=14% Similarity=0.159 Sum_probs=121.7
Q ss_pred cEEEEEeCCCCCEEEEE-eCCC----cEEEEECCCCceEEEEecCCce--eEEEeCCCEEE-EEc-----------CCeE
Q 011711 194 AVSGIALPLRSDKLYSG-SRDG----TVQLWDCHTGQSASVINLGAEV--GSLICEGPWVF-VGM-----------PNVV 254 (479)
Q Consensus 194 ~V~~l~~s~~~~~l~s~-s~Dg----~v~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~-~~~-----------~~~i 254 (479)
.+...+++|+++++|-+ +..| ++++.|+++|+.+...-..... .....++..++ +.. ...|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 44567889999988855 4444 5999999999876533211111 23334555544 432 3358
Q ss_pred EEEEcCCCce---EEecCCCcc--EEEEEEcCC--EEE-EEeCC---CcEEEEEccCCCCCcccceeeecCCCCCeEEEE
Q 011711 255 KAWHIESSAE---FSLDGPVGE--VYSMVVANE--MLF-AGAQD---GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLA 323 (479)
Q Consensus 255 ~v~~~~~~~~---~~~~~~~~~--v~~~~~~~~--~l~-~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~ 323 (479)
..|.+.+... ..+...... ...+..+++ +++ ..... ..+++.|+..................+....+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888877653 334333332 566777776 333 33332 347777877641000112222222233333444
Q ss_pred EcCCEEEEEe----CCCeEEEEECCCCcE---EEEEeCCCC--CcEEEEEcCCEEEEE-eCCC--eEEEEEcCCCcceEE
Q 011711 324 VGGKRLYSGS----MDNTIRVWDLDTLEA---VMTLNGHTD--APMSLLCWDQYLLSC-SLDN--TIKVWIMTEEGNLEV 391 (479)
Q Consensus 324 ~~~~~l~sgs----~dg~I~iwd~~~~~~---~~~~~~h~~--~v~~~~~~~~~l~s~-s~dg--~i~iwd~~~~~~~~~ 391 (479)
..+..++.-+ .++.|...++.+... ...+..+.. .+..+...+++|+.. ..++ .|+++++..+.....
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~ 364 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESRE 364 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence 4455444433 346788888887653 335555655 366666666665544 4444 578888872222222
Q ss_pred eccccCccceEEEeeeeCCCCCcEEEEEeC---CCeEEEeecCCCcee
Q 011711 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCN---DDSVHLYELPSFMER 436 (479)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~ 436 (479)
+..... ..+... ...++++.+.+.-+. -+++..||+.+++..
T Consensus 365 ~~~p~~-g~v~~~--~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 365 IPLPEA-GSVSGV--SGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EESSSS-SEEEEE--ES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred ecCCcc-eEEecc--CCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 222211 111222 223455544444432 256788888777653
No 389
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.60 E-value=2.6 Score=41.51 Aligned_cols=230 Identities=14% Similarity=0.076 Sum_probs=121.8
Q ss_pred EEEeccCCeeE-----eCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCC-----------cEEE
Q 011711 155 VCYHWLSGNCV-----KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG-----------TVQL 218 (479)
Q Consensus 155 ~c~~~~~~~~~-----~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg-----------~v~v 218 (479)
.++.+.+..++ .|++...+++.|++++..+...+..- .-..+.|.++++.|+-...|. .|+.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 34445555444 35566789999999993322333322 122399999988877665433 3888
Q ss_pred EECCCCceE--EEEecCCce---e--EEEeCCCEEEEE----cC-CeEEEEEcCCC-----ceEEec-CCCccEEEEEEc
Q 011711 219 WDCHTGQSA--SVINLGAEV---G--SLICEGPWVFVG----MP-NVVKAWHIESS-----AEFSLD-GPVGEVYSMVVA 280 (479)
Q Consensus 219 wd~~~~~~~--~~~~~~~~~---~--~~~~~~~~l~~~----~~-~~i~v~~~~~~-----~~~~~~-~~~~~v~~~~~~ 280 (479)
|++.+.... ..+...... . ....++++++.. .+ ..+.+.+.... ....+. ...+....+...
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~ 286 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH 286 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc
Confidence 888877543 444433222 1 223478887753 33 56888888875 233333 333444556556
Q ss_pred CCEEEEE----eCCCcEEEEEccCCCCCcccceeeecCCCC--CeEEEEEcCCEEEEE-eCCC--eEEEEECCCCcEEEE
Q 011711 281 NEMLFAG----AQDGNILVWKGIPNTQNPFQLAALLKGHTR--PVTCLAVGGKRLYSG-SMDN--TIRVWDLDTLEAVMT 351 (479)
Q Consensus 281 ~~~l~~g----~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~--~i~~l~~~~~~l~sg-s~dg--~I~iwd~~~~~~~~~ 351 (479)
++.++.- ..++.|...++...... .....+..+.. .+..+...+++|+.. ..++ .|+++|+..+.....
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~~~--~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~ 364 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPSPA--EWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESRE 364 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTSGG--GEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred CCEEEEeeCCCCCCcEEEEecccccccc--cceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence 6633332 23467777777765421 11224445555 466666666555544 4444 588999984455555
Q ss_pred EeCCCC-CcEEEEEc---CCEEEEEeC---CCeEEEEEcCCCcc
Q 011711 352 LNGHTD-APMSLLCW---DQYLLSCSL---DNTIKVWIMTEEGN 388 (479)
Q Consensus 352 ~~~h~~-~v~~~~~~---~~~l~s~s~---dg~i~iwd~~~~~~ 388 (479)
+..... .+..+... +.+.++.+. =+++..||+.+++.
T Consensus 365 ~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 365 IPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 543332 23444332 233333332 24677777776643
No 390
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.55 E-value=1.7 Score=42.74 Aligned_cols=192 Identities=13% Similarity=0.118 Sum_probs=98.1
Q ss_pred eEEEEEcCCCceEEecCCCccEEEEEEcCC---EEEEE--eCC-CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcC
Q 011711 253 VVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAG--AQD-GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGG 326 (479)
Q Consensus 253 ~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g--~~d-g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~ 326 (479)
.+.+-|.+......+......+..-.|+++ ..... ... ..+.++|+.++.. ..+..+.++.. .-....+|
T Consensus 174 ~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~---~~i~~~~g~~~-~P~fspDG 249 (425)
T COG0823 174 ELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR---PVILNFNGNNG-APAFSPDG 249 (425)
T ss_pred eEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc---ceeeccCCccC-CccCCCCC
Confidence 344444443333344444455555666666 22221 222 4599999988764 22333333332 22333345
Q ss_pred CE-EEEEeCCCe--EEEEECCCCcEEEEEeCCCCC--cEEEEEcCCEEEEEe-CCCe--EEEEEcCCCcceEEeccccCc
Q 011711 327 KR-LYSGSMDNT--IRVWDLDTLEAVMTLNGHTDA--PMSLLCWDQYLLSCS-LDNT--IKVWIMTEEGNLEVAYTHNED 398 (479)
Q Consensus 327 ~~-l~sgs~dg~--I~iwd~~~~~~~~~~~~h~~~--v~~~~~~~~~l~s~s-~dg~--i~iwd~~~~~~~~~~~~~~~~ 398 (479)
+. +++...||. |.+.|+.+.+..+ +..-.+. -.++..+|+.++-.+ ..|. |.+++.+.......... ...
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~-~~~ 327 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS-GGG 327 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc-CCC
Confidence 55 455566665 5666877766333 3322111 234444577666544 4554 55555554443222222 221
Q ss_pred cceEEEeeeeCCCCCcEEEEEeCCCe--EEEeecCCCceeeeeeccCceEEEEECCCc
Q 011711 399 HGVLALGGLNDPDGNPVLICSCNDDS--VHLYELPSFMERGRIFSRREVRVIETGPDG 454 (479)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~s~~~dg~--v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g 454 (479)
.. ...++|+|+.++.....+|. |.+.|+.++.....+........-.+.+++
T Consensus 328 ~~----~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng 381 (425)
T COG0823 328 NS----NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNG 381 (425)
T ss_pred Cc----CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCC
Confidence 11 45568999977777755565 777777666654444444444455566666
No 391
>smart00356 ZnF_C3H1 zinc finger.
Probab=95.41 E-value=0.01 Score=32.78 Aligned_cols=23 Identities=43% Similarity=0.993 Sum_probs=19.8
Q ss_pred ccceeeeeecCccCCCC-CCcccc
Q 011711 57 KKVLCVYFLEGRCNRNP-CRFAHT 79 (479)
Q Consensus 57 ~~~~~~~~~~~~~~~~p-~~~l~~ 79 (479)
+..+|.+|..|.|.+.+ |+|+|.
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCc
Confidence 45689999999999965 999985
No 392
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.37 E-value=1.2 Score=45.92 Aligned_cols=132 Identities=15% Similarity=0.101 Sum_probs=68.8
Q ss_pred CCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEE---EECCCCceEEEEecCCceeEEEeCCCE
Q 011711 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQL---WDCHTGQSASVINLGAEVGSLICEGPW 245 (479)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~v---wd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
..+.+.+.+++.+ +... ...+.|..+.|||||..++... ++.|.+ -....|+ .
T Consensus 428 ~~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~------------------ 483 (591)
T PRK13616 428 ATGQLARTPVDAS-AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-Y------------------ 483 (591)
T ss_pred CCceEEEEeccCc-hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-e------------------
Confidence 3455655566544 2222 3356799999999999988765 355544 2222222 0
Q ss_pred EEEEcCCeEEEEEcCCCceEEec-CCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEE
Q 011711 246 VFVGMPNVVKAWHIESSAEFSLD-GPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLA 323 (479)
Q Consensus 246 l~~~~~~~i~v~~~~~~~~~~~~-~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~ 323 (479)
++ .....+. .-...+.++.|.++ .|+++..++...+|.+.-.... .....-.....++..++
T Consensus 484 ---------~l-----~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~--~~~~~~~n~~~~v~~va 547 (591)
T PRK13616 484 ---------AL-----TNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN--SDALPSRNLSAPVVAVA 547 (591)
T ss_pred ---------ee-----cccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc--ccccCCCCccCceEEEe
Confidence 00 0001111 12223567888877 5667766666556654433211 00101111355677777
Q ss_pred EcCCEEEEEeCCCeEEE
Q 011711 324 VGGKRLYSGSMDNTIRV 340 (479)
Q Consensus 324 ~~~~~l~sgs~dg~I~i 340 (479)
-+...++....+|.+.+
T Consensus 548 a~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 548 ASPSTVYVTDARAVLQL 564 (591)
T ss_pred cCCceEEEEcCCceEEe
Confidence 66555666666664443
No 393
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.31 E-value=3 Score=40.39 Aligned_cols=215 Identities=18% Similarity=0.154 Sum_probs=114.8
Q ss_pred CCeeEeCCCCCeEEEeecCCCceeeEEEecc--cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCc---
Q 011711 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGH--KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE--- 235 (479)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H--~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~--- 235 (479)
.+.+..+..+|.|.-.|.+++ ..+.....- ...+..-.+..+|+ ++.++.++.+...|..+|+.+........
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g-~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTG-LVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCC-cEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 334445566667777777666 222211110 12222222222565 88888899999999999999998887771
Q ss_pred eeEEEe-CCCEEEEEcCCeEEEEEcCCCceEEecCC----CccEE-EEEEcCCEEEEEeC--CCcEEEEEccCCCCCccc
Q 011711 236 VGSLIC-EGPWVFVGMPNVVKAWHIESSAEFSLDGP----VGEVY-SMVVANEMLFAGAQ--DGNILVWKGIPNTQNPFQ 307 (479)
Q Consensus 236 ~~~~~~-~~~~l~~~~~~~i~v~~~~~~~~~~~~~~----~~~v~-~~~~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~ 307 (479)
...... ++..+....++.+...+..++...-.... ...+. ......+.++.+.. ++.+.-.|..++...-.+
T Consensus 146 ~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 146 ASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred ecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 111112 33333333678888888887766322111 11111 11133446666666 666777777666532110
Q ss_pred ceeeecCCCC-----CeE--EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEe---CCCe
Q 011711 308 LAALLKGHTR-----PVT--CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCS---LDNT 377 (479)
Q Consensus 308 ~~~~~~~h~~-----~i~--~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s---~dg~ 377 (479)
......+... .+. -+.. +..++.++.++.+...|..+++.+.++... ....+.-+.+.. .||.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v-~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~------~~~~~~~~~~~~~~~~dG~ 298 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYV-DGGVYAGSYGGKLLCLDADTGELIWSFPAG------GSVQGSGLYTTPVAGADGK 298 (370)
T ss_pred eeecccCcccccccccccCceEEE-CCcEEEEecCCeEEEEEcCCCceEEEEecc------cEeccCCeeEEeecCCCcc
Confidence 0011111111 111 1111 444577888899999999999999988865 111111112211 5788
Q ss_pred EEEEEcC
Q 011711 378 IKVWIMT 384 (479)
Q Consensus 378 i~iwd~~ 384 (479)
+.++...
T Consensus 299 v~~~~~~ 305 (370)
T COG1520 299 VYIGFTD 305 (370)
T ss_pred EEEEEec
Confidence 8887543
No 394
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.17 E-value=1.1 Score=44.15 Aligned_cols=132 Identities=19% Similarity=0.145 Sum_probs=76.8
Q ss_pred CeEEEEECCCCcEEEEEe--CCCCCcEEEEEcCCEEE-EEeCCCe--EEEEEcCCCcceEEeccccCccceEEEeeeeCC
Q 011711 336 NTIRVWDLDTLEAVMTLN--GHTDAPMSLLCWDQYLL-SCSLDNT--IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDP 410 (479)
Q Consensus 336 g~I~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (479)
..+.++|+.+++....+. ++. ....+..+|+.|+ +...||. |.+.|+....... +. +...+ .....++|
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~-~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt-~~~gi---~~~Ps~sp 291 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNN-GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LT-NGFGI---NTSPSWSP 291 (425)
T ss_pred ceEEEEeccCCccceeeccCCcc-CCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cc-cCCcc---ccCccCCC
Confidence 469999999877654443 332 2345555566554 5566775 5555666555222 22 22222 22556689
Q ss_pred CCCcEEEEEeCCCe--EEEeecCCCceeeeeeccCceEEEEECCCc-eEEE-EcCCCc--EEEEEeccC
Q 011711 411 DGNPVLICSCNDDS--VHLYELPSFMERGRIFSRREVRVIETGPDG-LFFT-GDGTGM--LSVWKILAK 473 (479)
Q Consensus 411 ~~~~~l~s~~~dg~--v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~s-g~~dg~--v~vw~~~~~ 473 (479)
+|+.++.+.+..|. |.+++.+.............-..-.|+||| +|+. ...+|. |.+.++.++
T Consensus 292 dG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 292 DGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 99988888877776 556666666554333333333388999999 5444 433455 555554443
No 395
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=0.61 Score=45.48 Aligned_cols=137 Identities=12% Similarity=0.164 Sum_probs=90.2
Q ss_pred CCCCEEE-EEeCCCcEEEEECCCCceEEEEecCCceeE--EEe--------CCCEEEEEcCCeEEEEEcCCCce--E-Ee
Q 011711 202 LRSDKLY-SGSRDGTVQLWDCHTGQSASVINLGAEVGS--LIC--------EGPWVFVGMPNVVKAWHIESSAE--F-SL 267 (479)
Q Consensus 202 ~~~~~l~-s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~--~~~--------~~~~l~~~~~~~i~v~~~~~~~~--~-~~ 267 (479)
.+.++|+ ++.....++-.|++.|+.+.+......+.- +.+ ....++.-.++.|.-||++-... + ..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3444444 445556788889999999998887766322 222 23345556888999999874433 1 11
Q ss_pred cC----CCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEE
Q 011711 268 DG----PVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRV 340 (479)
Q Consensus 268 ~~----~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~i 340 (479)
+. ......|.+...+ ++++|+.+|.|++||-... .....+.+-..+|..+... |++++ |..+..+.+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~-----~AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyLlL 496 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGR-----RAKTALPGLGDAIKHVDVTADGKWIL-ATCKTYLLL 496 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehhhhh-----hhhhcccccCCceeeEEeeccCcEEE-EecccEEEE
Confidence 11 2234556666666 9999999999999996321 2345577788899988875 66554 455677777
Q ss_pred EECC
Q 011711 341 WDLD 344 (479)
Q Consensus 341 wd~~ 344 (479)
-++.
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 7753
No 396
>PHA02790 Kelch-like protein; Provisional
Probab=94.93 E-value=2.9 Score=42.14 Aligned_cols=128 Identities=9% Similarity=-0.017 Sum_probs=64.3
Q ss_pred eEEEEEcCCCceEEec---CCCccEEEEEEcCCEEEEEeCC--CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCC
Q 011711 253 VVKAWHIESSAEFSLD---GPVGEVYSMVVANEMLFAGAQD--GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGK 327 (479)
Q Consensus 253 ~i~v~~~~~~~~~~~~---~~~~~v~~~~~~~~~l~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~ 327 (479)
.+..||..++.-.... ............+...++|+.+ ..+..||..++. +.....+............++.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~---W~~~~~l~~~r~~~~~~~~~g~ 364 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAA---WVNMPSLLKPRCNPAVASINNV 364 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCe---EEECCCCCCCCcccEEEEECCE
Confidence 5667888776544322 1222222333444466666653 357788865543 3233333322223334455677
Q ss_pred EEEEEeCCC---eEEEEECCCCcEEEE--EeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCC
Q 011711 328 RLYSGSMDN---TIRVWDLDTLEAVMT--LNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEE 386 (479)
Q Consensus 328 ~l~sgs~dg---~I~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~ 386 (479)
..+.|+.++ .+..||.++.+-... +.............+...+.| |.+.+||.++.
T Consensus 365 IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 365 IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSN 425 (480)
T ss_pred EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCC
Confidence 778877654 477888876543221 111111122223334444555 35678888654
No 397
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.69 E-value=7.1 Score=41.48 Aligned_cols=299 Identities=14% Similarity=0.115 Sum_probs=151.7
Q ss_pred eeEeCCCCCeEEEeecC-CC-----ceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceE-------EE
Q 011711 163 NCVKGDECRFWHSWFCG-EG-----FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA-------SV 229 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~-~~-----~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~-------~~ 229 (479)
..+-++.+|.+.-.-+. ++ ..+...+-+..+-..++.+-++ ..|+.||.-|.=++-.+.+.... .+
T Consensus 271 ~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~n-g~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet 349 (1096)
T KOG1897|consen 271 RYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDN-GVLFVGSRFGDSQLIKLNTEPDVGSYVVILET 349 (1096)
T ss_pred EEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccC-ceEEEeccCCceeeEEccccCCCCchhhhhhh
Confidence 45556666655544443 21 1112222334444555555444 47888888776666666544322 23
Q ss_pred EecCCceeEEEe-------CCCEEEEE---cCCeEEEEEcCCCc----eEEecCCCccEEEEE--EcCC---EEEEEeCC
Q 011711 230 INLGAEVGSLIC-------EGPWVFVG---MPNVVKAWHIESSA----EFSLDGPVGEVYSMV--VANE---MLFAGAQD 290 (479)
Q Consensus 230 ~~~~~~~~~~~~-------~~~~l~~~---~~~~i~v~~~~~~~----~~~~~~~~~~v~~~~--~~~~---~l~~g~~d 290 (479)
+..-.++..+.- .+.++.++ .|+++++....-+- ...+.+ ...++.+. ++++ +++.+-.+
T Consensus 350 ~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~ 428 (1096)
T KOG1897|consen 350 FVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFIS 428 (1096)
T ss_pred cccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEecc
Confidence 332334444332 34455554 57888887644332 223444 34455555 3332 55555433
Q ss_pred CcEEEEEccCCCCCcccceeeecCCCCCeEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEE-EEEcC
Q 011711 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV---GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMS-LLCWD 366 (479)
Q Consensus 291 g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~-~~~~~ 366 (479)
.-++..+...- + .....+-......+.. .++.++=... ..|++++-. .....+......... +..+.
T Consensus 429 -eTrvl~i~~e~----e-e~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~ 499 (1096)
T KOG1897|consen 429 -ETRVLNISEEV----E-ETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA--GLRSEWRPPGKITIGVVSANA 499 (1096)
T ss_pred -ceEEEEEccce----E-EeccccccccCceEEEEccCCceEEEEec-ccEEEEcch--hhhhcccCCCceEEEEEeecc
Confidence 34444443321 1 1111122222222333 3555444333 457777754 233344433332222 22334
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCc---EEEEEeCCCeEEEee-cCCCceeeeeec-
Q 011711 367 QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNP---VLICSCNDDSVHLYE-LPSFMERGRIFS- 441 (479)
Q Consensus 367 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~s~~~dg~v~iwd-~~~~~~~~~~~~- 441 (479)
..++.++.++.+...++.... +.....+.-+....++...+-++++. +++.|..+..+.+.- +++...+.....
T Consensus 500 sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~ 578 (1096)
T KOG1897|consen 500 SQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLS 578 (1096)
T ss_pred eEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccC
Confidence 567777777888877777655 44444444444444444333344444 889998777655443 344443333321
Q ss_pred ----cCceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 442 ----RREVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 442 ----~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
...|.-..+-.|. +|.++..||.+..|.+...
T Consensus 579 ~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 579 GEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred CCccchheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence 3445555666656 9999999999988877653
No 398
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.69 E-value=2.8 Score=40.93 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=91.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCc-----EEEEEeCCCCCcEEEEEc------CCEEEEEeCCCeEEEEEcCCC--------
Q 011711 326 GKRLYSGSMDNTIRVWDLDTLE-----AVMTLNGHTDAPMSLLCW------DQYLLSCSLDNTIKVWIMTEE-------- 386 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~~~~-----~~~~~~~h~~~v~~~~~~------~~~l~s~s~dg~i~iwd~~~~-------- 386 (479)
...+++|+..|.++||+..... .+.+.+ -..+|..+..- +...++.=.-..+.||.+...
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 4689999999999999986533 222222 23556666543 223333345567788876322
Q ss_pred -cceEEeccccCccceEEEeee--eCCCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEECCCc-eEEEEcCC
Q 011711 387 -GNLEVAYTHNEDHGVLALGGL--NDPDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETGPDG-LFFTGDGT 462 (479)
Q Consensus 387 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s~~g-~l~sg~~d 462 (479)
-.+...+.|.-......++.- ....++.++.+=+.||.+.+|+-+.......+..---.--+.+.+.- .|++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 134455555555444444332 23444568888999999999998876544444443334456666666 88888888
Q ss_pred CcEEEEEec
Q 011711 463 GMLSVWKIL 471 (479)
Q Consensus 463 g~v~vw~~~ 471 (479)
..|.-|+..
T Consensus 196 ~~l~~Yky~ 204 (418)
T PF14727_consen 196 WTLECYKYQ 204 (418)
T ss_pred eeEEEecHH
Confidence 888888764
No 399
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.56 E-value=3.5 Score=37.47 Aligned_cols=163 Identities=13% Similarity=0.128 Sum_probs=107.0
Q ss_pred EecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC----ceeEEEeCCCEEEEE-cCCeEEEEEcCCC
Q 011711 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA----EVGSLICEGPWVFVG-MPNVVKAWHIESS 262 (479)
Q Consensus 188 ~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~-~~~~i~v~~~~~~ 262 (479)
+.|-+..|.++.|+|+.+.|++......-.||=...|+.+++++... +.....-+|.++++. .++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 44555669999999999999999998888888888999999988653 223333456666665 5677777776655
Q ss_pred ceE--------Eec---CCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCCCCCcccceeeecCC-------CCCeEEE
Q 011711 263 AEF--------SLD---GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH-------TRPVTCL 322 (479)
Q Consensus 263 ~~~--------~~~---~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h-------~~~i~~l 322 (479)
... .+. ......-.++|++. .|+++-+-.-+.||.+...... .. ......+ -..|.++
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~-l~-~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS-LS-VHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc-cc-cccccCcccccceEeeccccc
Confidence 321 111 12455678899877 8888888888888887644311 11 1111111 1235567
Q ss_pred EEc---CCEEEEEeCCCeEEEEECCCCcEEEEEe
Q 011711 323 AVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (479)
Q Consensus 323 ~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 353 (479)
.++ +.+++-+.+++.+.-.|.. ++.+..+.
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 776 6677777788888888865 44444443
No 400
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=5.1 Score=39.00 Aligned_cols=269 Identities=15% Similarity=0.134 Sum_probs=149.6
Q ss_pred EEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEe-CCCcEEEEECCCCceEEEEecC---CceeEEEeCCCEEEE
Q 011711 173 WHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS-RDGTVQLWDCHTGQSASVINLG---AEVGSLICEGPWVFV 248 (479)
Q Consensus 173 i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s-~Dg~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~ 248 (479)
+.+++..+. .....+.-+. ....+...+++..++... ....+..-+............+ .....+...+..+++
T Consensus 13 ~~v~~~~~~-~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTN-KVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeeccc-EEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence 556665554 3333343333 455667778875544443 2224555554422222222222 112233445554444
Q ss_pred E--cCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeC---CCcEEEEEccCCCCCcccceeeecCCCCCeEE
Q 011711 249 G--MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ---DGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 249 ~--~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
. .++.|.+.|..+............-..++++++ .+.++.. ++.+.+.|..++.. ......-..+ ..
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~-----~~~~~vG~~P-~~ 164 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV-----TATIPVGNTP-TG 164 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE-----EEEEecCCCc-ce
Confidence 3 478999999887777654433335566777765 4544443 68888888777643 2222222234 66
Q ss_pred EEEc--CCEEEEE-eCCCeEEEEECCCCcEEE-E----EeCCCC-CcEEEEEcCCEEEEEeCC---CeEEEEEcCCCcce
Q 011711 322 LAVG--GKRLYSG-SMDNTIRVWDLDTLEAVM-T----LNGHTD-APMSLLCWDQYLLSCSLD---NTIKVWIMTEEGNL 389 (479)
Q Consensus 322 l~~~--~~~l~sg-s~dg~I~iwd~~~~~~~~-~----~~~h~~-~v~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~ 389 (479)
++++ ++.+++. ..++.|.+.|..+..... . ...... ....+..++.++...... +.+...|..+....
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~ 244 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT 244 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence 7775 7755554 478999999987766653 1 221222 233344456655544433 58888888776554
Q ss_pred EEeccccC-ccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec----cCceEEEEECCC
Q 011711 390 EVAYTHNE-DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS----RREVRVIETGPD 453 (479)
Q Consensus 390 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~v~~l~~s~~ 453 (479)
........ ....+.. +|+|+.+.+.-+..+.+.+.|..+......... ...+..+++.+.
T Consensus 245 ~~~~~~~~~~~~~v~~----~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 245 ATDLPVGSGAPRGVAV----DPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EeccccccCCCCceeE----CCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 43222222 1222333 599995555556668999999988777666543 223555555554
No 401
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=3 Score=35.86 Aligned_cols=150 Identities=13% Similarity=0.046 Sum_probs=91.0
Q ss_pred CCCEEEEEeCC--CcEEEEECCCCceEEEEecCC-cee--EEEe--CCCEEEEEcCCeEEEEEcCCCceEEecCCCccEE
Q 011711 203 RSDKLYSGSRD--GTVQLWDCHTGQSASVINLGA-EVG--SLIC--EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVY 275 (479)
Q Consensus 203 ~~~~l~s~s~D--g~v~vwd~~~~~~~~~~~~~~-~~~--~~~~--~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~ 275 (479)
+|.++.+.+.- ..|++||+.+|+.+...+... .+. .+.. +.-+..+-.++....+|..+-++.....-.++=.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 45667776653 469999999999888877662 110 1112 2234455678888889988887765555666777
Q ss_pred EEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCC-CCCeEEEEE-cCCEEEEEeCCCeEEEEECCCCcEEEEEe
Q 011711 276 SMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH-TRPVTCLAV-GGKRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (479)
Q Consensus 276 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h-~~~i~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 353 (479)
.++.+.+.|+.+.....++.-|..+-... .....+..+. -..++.+.+ +|...+-.-.+..|...|.++|+.+..+.
T Consensus 135 gLt~d~~~LimsdGsatL~frdP~tfa~~-~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~wid 213 (262)
T COG3823 135 GLTSDDKNLIMSDGSATLQFRDPKTFAEL-DTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWID 213 (262)
T ss_pred eeecCCcceEeeCCceEEEecCHHHhhhc-ceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEE
Confidence 88888877777777777777775543221 0111112211 112333444 35555555556667777778887766553
No 402
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.83 E-value=6.4 Score=37.67 Aligned_cols=261 Identities=15% Similarity=0.128 Sum_probs=106.6
Q ss_pred EeCCCCCEEEEEeC-C--CcEEEEECCCCceEEEEecCCc---eeEEEeCCCEEE-EEcCCeEEEEEcCCCceEE-ecCC
Q 011711 199 ALPLRSDKLYSGSR-D--GTVQLWDCHTGQSASVINLGAE---VGSLICEGPWVF-VGMPNVVKAWHIESSAEFS-LDGP 270 (479)
Q Consensus 199 ~~s~~~~~l~s~s~-D--g~v~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~-~~~~~~i~v~~~~~~~~~~-~~~~ 270 (479)
+|.+||+.|+-++. | ..+.+.|+.+++..+.-..... ...+.++++.++ .-....+...|+++.++.. ...+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 45778877665554 4 4677779999988877665422 244555666654 5567789999999987643 2333
Q ss_pred CccEEEEEE--cCC-EEEEEeC-----------------------CCcEEEEEccCCCCCcccceeeecCCCCCeEEEEE
Q 011711 271 VGEVYSMVV--ANE-MLFAGAQ-----------------------DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV 324 (479)
Q Consensus 271 ~~~v~~~~~--~~~-~l~~g~~-----------------------dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~ 324 (479)
...+-...+ +.+ ..++|.. ...|.-.|+.+++ ...+.....-+..+.+
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~------~~~v~~~~~wlgH~~f 195 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE------RKVVFEDTDWLGHVQF 195 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--------EEEEEEESS-EEEEEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc------eeEEEecCccccCccc
Confidence 333322333 222 2233221 0112223333322 1111112223344455
Q ss_pred c---CCEEEEEeC---CC-eEEEEECCC-CcEEEEEeCCCCC-cEEEEEc---CCEEEEE-----eCCCeEEEEEcCCCc
Q 011711 325 G---GKRLYSGSM---DN-TIRVWDLDT-LEAVMTLNGHTDA-PMSLLCW---DQYLLSC-----SLDNTIKVWIMTEEG 387 (479)
Q Consensus 325 ~---~~~l~sgs~---dg-~I~iwd~~~-~~~~~~~~~h~~~-v~~~~~~---~~~l~s~-----s~dg~i~iwd~~~~~ 387 (479)
+ ...++-|-+ |. .-+||-+++ +...+.+..+... +..=.++ |..|.-- +.+..|.-+|+.+.+
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 4 334444332 22 125565443 3334444333321 2222222 4333321 123356666776654
Q ss_pred ceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCC----------------eEEEeecCCCceeeeeecc---------
Q 011711 388 NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD----------------SVHLYELPSFMERGRIFSR--------- 442 (479)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg----------------~v~iwd~~~~~~~~~~~~~--------- 442 (479)
.... .... . +.-...+++|+ +++.-+.|. -|+++++..+....-..|.
T Consensus 276 ~~~~-~~~p-~----~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~ 348 (386)
T PF14583_consen 276 RRRL-MEMP-W----CSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD 348 (386)
T ss_dssp EEEE-EEE--S----EEEEEE-TTSS-EEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTB
T ss_pred ceEE-EeCC-c----eeeeEEcCCCC-EEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCC
Confidence 4322 1111 1 12233368888 444333332 4667777765543222221
Q ss_pred C--ceEEEEECCCc--eEEEEcCCCcEEEEEecc
Q 011711 443 R--EVRVIETGPDG--LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 443 ~--~v~~l~~s~~g--~l~sg~~dg~v~vw~~~~ 472 (479)
. .=.-..|+||| .|++....|...||-++-
T Consensus 349 ~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 349 RQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp SSTT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred CccCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence 1 13467999999 788888999999987654
No 403
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.81 E-value=9.3 Score=39.45 Aligned_cols=184 Identities=13% Similarity=0.080 Sum_probs=90.1
Q ss_pred cccccEEEEEeCCCCCEEEEEe------CCC--cEEEEECCCCceEEEEecCCcee--EEEeCCCEEEEEcC--------
Q 011711 190 GHKKAVSGIALPLRSDKLYSGS------RDG--TVQLWDCHTGQSASVINLGAEVG--SLICEGPWVFVGMP-------- 251 (479)
Q Consensus 190 ~H~~~V~~l~~s~~~~~l~s~s------~Dg--~v~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~-------- 251 (479)
+....+.+.+++|+|+.++... .|. .|.+++.. +.. ..+....... .+.++|..+....+
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEe
Confidence 3335688999999999887665 244 45555542 222 2222222222 23345454443322
Q ss_pred -----CeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEc---cCCCCCcccceeeecCCCCCeEE
Q 011711 252 -----NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKG---IPNTQNPFQLAALLKGHTRPVTC 321 (479)
Q Consensus 252 -----~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~---~~~~~~~~~~~~~~~~h~~~i~~ 321 (479)
+.+.+.++..+.... ...+.|..+.|++| .++... +|.|++=-+ ..+......+......-...+.+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 233333444433322 33567999999998 444433 577877332 22221101111111223334678
Q ss_pred EEEc-CCEEEEEeCCCeEEEEECCC-CcEEEEEeC--CCCCcEEEEEcCCEEEEEeCCCeE
Q 011711 322 LAVG-GKRLYSGSMDNTIRVWDLDT-LEAVMTLNG--HTDAPMSLLCWDQYLLSCSLDNTI 378 (479)
Q Consensus 322 l~~~-~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~--h~~~v~~~~~~~~~l~s~s~dg~i 378 (479)
+.|. +..|+++..++.-.+|.+.- +.....+.. ....+.+++-....++....++.+
T Consensus 502 l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~ 562 (591)
T PRK13616 502 LDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVL 562 (591)
T ss_pred ceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceE
Confidence 8895 55566766655544554322 221111222 244456666555555555556533
No 404
>PLN02153 epithiospecifier protein
Probab=93.70 E-value=6.7 Score=37.46 Aligned_cols=131 Identities=12% Similarity=0.052 Sum_probs=63.1
Q ss_pred cEEEEECCCCceEEEEecC---C----ceeEEEeCCCEEEEEc-C-----CeEEEEEcCCCceEEecC------CCc-cE
Q 011711 215 TVQLWDCHTGQSASVINLG---A----EVGSLICEGPWVFVGM-P-----NVVKAWHIESSAEFSLDG------PVG-EV 274 (479)
Q Consensus 215 ~v~vwd~~~~~~~~~~~~~---~----~~~~~~~~~~~l~~~~-~-----~~i~v~~~~~~~~~~~~~------~~~-~v 274 (479)
.+.++|+.+.+-....... . .......++.+++.|. + +.+.+||+.+.+-..... +.. .-
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~ 130 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF 130 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCcee
Confidence 4777787776543322111 1 1112333555554442 1 367888888765433221 111 12
Q ss_pred EEEEEcCC-EEEEEeCC-----------CcEEEEEccCCCCCcccceeeec---CCCCCeEEEEEcCCEEEEEeCC----
Q 011711 275 YSMVVANE-MLFAGAQD-----------GNILVWKGIPNTQNPFQLAALLK---GHTRPVTCLAVGGKRLYSGSMD---- 335 (479)
Q Consensus 275 ~~~~~~~~-~l~~g~~d-----------g~i~iwd~~~~~~~~~~~~~~~~---~h~~~i~~l~~~~~~l~sgs~d---- 335 (479)
.+++...+ +.+.|+.+ ..+.+||..++. +..+.... ..........+++++++.|+.+
T Consensus 131 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~---W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 207 (341)
T PLN02153 131 HSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK---WVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSIL 207 (341)
T ss_pred eEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe---EeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccc
Confidence 23344444 55666643 247788877653 22221111 1111222334556666655432
Q ss_pred ---------CeEEEEECCCCcE
Q 011711 336 ---------NTIRVWDLDTLEA 348 (479)
Q Consensus 336 ---------g~I~iwd~~~~~~ 348 (479)
..+.+||+.+.+-
T Consensus 208 ~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 208 PGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred cCCccceecCceEEEEcCCCcE
Confidence 4688899887654
No 405
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.62 E-value=2.3 Score=38.36 Aligned_cols=201 Identities=14% Similarity=0.163 Sum_probs=102.3
Q ss_pred eEEEeecCCCceee-------EEEecccccEEEEEeCCCCCEEEEEeCC-----CcEEEEECCCC-ceEEEEe---cCCc
Q 011711 172 FWHSWFCGEGFTML-------AKLEGHKKAVSGIALPLRSDKLYSGSRD-----GTVQLWDCHTG-QSASVIN---LGAE 235 (479)
Q Consensus 172 ~i~vw~~~~~~~~~-------~~~~~H~~~V~~l~~s~~~~~l~s~s~D-----g~v~vwd~~~~-~~~~~~~---~~~~ 235 (479)
...++|.....+++ +.|-||. .|||||.+|+..-.| |.|-|||...+ +.+.++. .+..
T Consensus 92 f~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH 165 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH 165 (366)
T ss_pred eEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc
Confidence 34566766552222 2344553 689999999987554 78999998744 2333443 3344
Q ss_pred eeEEEeCCCEEEEEcCC-------------------eEEEEEcCCCceEE---ec--CCCccEEEEEEcCC-EEEEEeC-
Q 011711 236 VGSLICEGPWVFVGMPN-------------------VVKAWHIESSAEFS---LD--GPVGEVYSMVVANE-MLFAGAQ- 289 (479)
Q Consensus 236 ~~~~~~~~~~l~~~~~~-------------------~i~v~~~~~~~~~~---~~--~~~~~v~~~~~~~~-~l~~g~~- 289 (479)
...+..+|+.+++.+.+ .+.+.|..++..++ +. .+.-.|..++..++ .+..|+.
T Consensus 166 ev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 166 EVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred eeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 55667788888775443 23344433443321 11 22334455555444 3333321
Q ss_pred CCc-----EEEEEccCCCCCcccceee----ecCCCCCeEEEEEc--CCE-EEEEeCCCeEEEEECCCCcEEEEEeCCCC
Q 011711 290 DGN-----ILVWKGIPNTQNPFQLAAL----LKGHTRPVTCLAVG--GKR-LYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357 (479)
Q Consensus 290 dg~-----i~iwd~~~~~~~~~~~~~~----~~~h~~~i~~l~~~--~~~-l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 357 (479)
.|. -.+=-...+.. ++.+.. .......|-+++.+ ..+ .+|+-..+...+||..++..+..-....
T Consensus 246 ~G~~~d~ppLvg~~~~g~~--l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d- 322 (366)
T COG3490 246 RGPRNDLPPLVGHFRKGEP--LEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD- 322 (366)
T ss_pred eCCCccCCcceeeccCCCc--CcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-
Confidence 110 00000000000 111100 01123346677776 344 4444456677899999999876543221
Q ss_pred CcEEEEEcCCEEEEEeCCCeEEEEE
Q 011711 358 APMSLLCWDQYLLSCSLDNTIKVWI 382 (479)
Q Consensus 358 ~v~~~~~~~~~l~s~s~dg~i~iwd 382 (479)
...+.....-++..+.+|.+.++.
T Consensus 323 -aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 323 -AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred -cccceeccCceEEecCCceEEecc
Confidence 233444444455666688888774
No 406
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.58 E-value=5.3 Score=36.20 Aligned_cols=182 Identities=12% Similarity=0.089 Sum_probs=98.0
Q ss_pred eEEEeccCCeeEeC-----CCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeC------C---------
Q 011711 154 NVCYHWLSGNCVKG-----DECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR------D--------- 213 (479)
Q Consensus 154 ~~c~~~~~~~~~~g-----~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~------D--------- 213 (479)
.-||++.+..+.+. ..-|.|-|||...+++.+.++..|.-.-..+.|.+||+.|+.+.. |
T Consensus 118 HGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 118 HGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 34566665554432 234789999999999999999999988899999999999887753 1
Q ss_pred ---CcEEEEECCCCceEEEEecCCc-----eeEEE--eCCCEEEEEc------CCeEEEEEcCCCceEEec--------C
Q 011711 214 ---GTVQLWDCHTGQSASVINLGAE-----VGSLI--CEGPWVFVGM------PNVVKAWHIESSAEFSLD--------G 269 (479)
Q Consensus 214 ---g~v~vwd~~~~~~~~~~~~~~~-----~~~~~--~~~~~l~~~~------~~~i~v~~~~~~~~~~~~--------~ 269 (479)
-++.+.|..+|+.+....+... +..+. .+|.+.+.+. |---.+=....++.+.+. .
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence 1233334344444433333211 11111 1333333320 000001111112211111 1
Q ss_pred CCccEEEEEEcCC--EEEEEe-CCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEE
Q 011711 270 PVGEVYSMVVANE--MLFAGA-QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWD 342 (479)
Q Consensus 270 ~~~~v~~~~~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd 342 (479)
-...|-+++.+.+ .++..+ ..+...+||..++.. . ....-.....+....+-+++.+.+|.+..+.
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v-----v--~~a~l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV-----V--SEAALPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE-----E--ecccccccccceeccCceEEecCCceEEecc
Confidence 1234566777644 444444 445567899988753 1 1112223344555555566667788888774
No 407
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.07 E-value=4.1 Score=41.85 Aligned_cols=101 Identities=22% Similarity=0.266 Sum_probs=62.3
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC---------CCcee
Q 011711 366 DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP---------SFMER 436 (479)
Q Consensus 366 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~---------~~~~~ 436 (479)
++..++-+....+.|||.+... ++..........+..+.....|+++.++++| -.+.|.+|.-. +...+
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGV-LEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcE-EEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccchhhhcCCccccee
Confidence 4444454555689999998765 2222233334445566666789999555554 68888888542 12233
Q ss_pred eeee----ccCceEEEEECCCceEEEEcCCCcEEEEE
Q 011711 437 GRIF----SRREVRVIETGPDGLFFTGDGTGMLSVWK 469 (479)
Q Consensus 437 ~~~~----~~~~v~~l~~s~~g~l~sg~~dg~v~vw~ 469 (479)
..+. ...+|.+..|.++|.|+.|+.+ .+.|++
T Consensus 119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN-qlfv~d 154 (631)
T PF12234_consen 119 RKIDISSHTPHPIGDSIWLKDGTLVVGSGN-QLFVFD 154 (631)
T ss_pred EEEEeecCCCCCccceeEecCCeEEEEeCC-EEEEEC
Confidence 3332 1578999999999966665533 466665
No 408
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.04 E-value=7.8 Score=36.28 Aligned_cols=213 Identities=16% Similarity=0.179 Sum_probs=107.7
Q ss_pred EeCCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCceeEE-EeCCCEEEEEcCCeEEEEEcCCCceEE-ec-----CC
Q 011711 199 ALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL-ICEGPWVFVGMPNVVKAWHIESSAEFS-LD-----GP 270 (479)
Q Consensus 199 ~~s~~~~-~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~i~v~~~~~~~~~~-~~-----~~ 270 (479)
.|.++.. ++.+--..+.|.-|+..+++... +.......+. ..+..-.+.+.+..+.+++.+.+...+ +. ..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~ 109 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLP 109 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCC
Confidence 3555555 44455566788888887664332 2222222222 223332333333344445555444411 11 12
Q ss_pred CccEEEEEEcCC-EEEEEeCC------------CcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeC-
Q 011711 271 VGEVYSMVVANE-MLFAGAQD------------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM- 334 (479)
Q Consensus 271 ~~~v~~~~~~~~-~l~~g~~d------------g~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~- 334 (479)
....+.....++ .+..++.. |.|+.+|. .+. .......+-..-+.|+|+ ++.|+.+..
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~-----~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG-----VVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC-----EEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 234455666666 55554444 32333332 111 233334444445578886 666666554
Q ss_pred CCeEEEEECCC--C----cE-EEEEeCCCCCcEEEEEc--CCEEEEEeCCC-eEEEEEcCCCcceEEeccccCccceEEE
Q 011711 335 DNTIRVWDLDT--L----EA-VMTLNGHTDAPMSLLCW--DQYLLSCSLDN-TIKVWIMTEEGNLEVAYTHNEDHGVLAL 404 (479)
Q Consensus 335 dg~I~iwd~~~--~----~~-~~~~~~h~~~v~~~~~~--~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 404 (479)
.+.|.-|++.. + +. ...+....+..-.++.+ |.+.+++-.+| .|.+|+.+ ++.+..+..........++
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 47888887752 1 11 11222233444444444 55554444444 89999987 7666666665455555555
Q ss_pred eeeeCCCCCcEEEEEeCC
Q 011711 405 GGLNDPDGNPVLICSCND 422 (479)
Q Consensus 405 ~~~~~~~~~~~l~s~~~d 422 (479)
. .++.+.+++++...
T Consensus 263 g---G~~~~~L~iTs~~~ 277 (307)
T COG3386 263 G---GPDLNTLYITSARS 277 (307)
T ss_pred e---CCCcCEEEEEecCC
Confidence 4 36666566666444
No 409
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.47 E-value=2.3 Score=41.54 Aligned_cols=143 Identities=10% Similarity=0.077 Sum_probs=85.4
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc-------CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccc
Q 011711 328 RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-------DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHG 400 (479)
Q Consensus 328 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 400 (479)
.+..|.....++-.|+..|+.+.++..|...+...... ...-+.|-.+..|.-.|.+-..............+
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t 561 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT 561 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc
Confidence 34456777788888999999999999888775554443 22334444555566666654442222222222222
Q ss_pred eEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeeec-cCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 401 VLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIFS-RREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 401 ~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
...++........ ++++++..|-|++||--.-.....++. ..+|..+..+.+| .+++.+. ..+.+-|+.-
T Consensus 562 Kn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 562 KNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred cccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 2223222222333 799999999999999654444444444 6789999999999 4444433 3455555543
No 410
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.30 E-value=11 Score=36.36 Aligned_cols=186 Identities=13% Similarity=0.069 Sum_probs=108.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEecCC---c--eeEEEeCCCEEEEEcCCeEEEEEcCCCceEE-ecCCC-ccEEEE
Q 011711 205 DKLYSGSRDGTVQLWDCHTGQSASVINLGA---E--VGSLICEGPWVFVGMPNVVKAWHIESSAEFS-LDGPV-GEVYSM 277 (479)
Q Consensus 205 ~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~-~~~~~-~~v~~~ 277 (479)
..++.+..||.|.-.|.++++.+....... . ...+..+|++++...++.+..+|..++++.- ..... ..+..-
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 345556788888888888888765444332 1 1112237888888888889999997776653 33222 112222
Q ss_pred EEcCC-EEEEEeCCCcEEEEEccCCCCCcccce----eeecCCCCCeEEEEEcCCEEEEEeC--CCeEEEEECCCCcEEE
Q 011711 278 VVANE-MLFAGAQDGNILVWKGIPNTQNPFQLA----ALLKGHTRPVTCLAVGGKRLYSGSM--DNTIRVWDLDTLEAVM 350 (479)
Q Consensus 278 ~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~----~~~~~h~~~i~~l~~~~~~l~sgs~--dg~I~iwd~~~~~~~~ 350 (479)
....+ .+..++.+|.+...|..++... ++.. ........++ .....++.+.. ++.+.-.|..+++...
T Consensus 149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~-W~~~~~~~~~~~~~~~~~----~~~~~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 149 PVVGDGTVYVGTDDGHLYALNADTGTLK-WTYETPAPLSLSIYGSPA----IASGTVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred cEEcCcEEEEecCCCeEEEEEccCCcEE-EEEecCCccccccccCce----eecceEEEecCCCcceEEEEEccCCcEee
Confidence 22223 5666667899998888776531 1100 0111112222 33455556555 6778888998988877
Q ss_pred EEeCCCCC----c-EEEEE------cCCEEEEEeCCCeEEEEEcCCCcceEEeccc
Q 011711 351 TLNGHTDA----P-MSLLC------WDQYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395 (479)
Q Consensus 351 ~~~~h~~~----v-~~~~~------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (479)
..+.+... + ..-.. .+.-++.++.++.+...|..+++.+......
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 74322111 1 00011 1345577788888999999888877666553
No 411
>PLN02193 nitrile-specifier protein
Probab=92.21 E-value=14 Score=37.15 Aligned_cols=102 Identities=7% Similarity=0.085 Sum_probs=51.8
Q ss_pred CEEEEEeCC-----CcEEEEEccCCCCCcccceeeec---CCCCCeEEEEEcCCEEEEEeCCC-----eEEEEECCCCcE
Q 011711 282 EMLFAGAQD-----GNILVWKGIPNTQNPFQLAALLK---GHTRPVTCLAVGGKRLYSGSMDN-----TIRVWDLDTLEA 348 (479)
Q Consensus 282 ~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~---~h~~~i~~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~ 348 (479)
.+.+.|+.+ ..+..||+.+.. +..+.... ...........++.+++.|+.++ .+..||+.+.+-
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~---W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNE---WKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCE---EEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 355555544 357788877653 22222111 11111222334466667776543 467788877543
Q ss_pred EEEEeC------CCCCcEEEEEcCCEEEEEeCC----CeEEEEEcCCCc
Q 011711 349 VMTLNG------HTDAPMSLLCWDQYLLSCSLD----NTIKVWIMTEEG 387 (479)
Q Consensus 349 ~~~~~~------h~~~v~~~~~~~~~l~s~s~d----g~i~iwd~~~~~ 387 (479)
.. +.. ...........++.++.++.+ ..+.+||+.+.+
T Consensus 307 ~~-~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 307 FH-CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred Ee-CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCE
Confidence 21 111 111122233456777777655 458899987654
No 412
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=5.1 Score=34.50 Aligned_cols=176 Identities=16% Similarity=0.097 Sum_probs=98.4
Q ss_pred EEEcCC-EEEEEeC--CCcEEEEEccCCCCCcccceeeecCCCCCeE--EEEEcCCEEEE-EeCCCeEEEEECCCCcEEE
Q 011711 277 MVVANE-MLFAGAQ--DGNILVWKGIPNTQNPFQLAALLKGHTRPVT--CLAVGGKRLYS-GSMDNTIRVWDLDTLEAVM 350 (479)
Q Consensus 277 ~~~~~~-~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~--~l~~~~~~l~s-gs~dg~I~iwd~~~~~~~~ 350 (479)
+...++ ++.+.+. ...|++||+.+++.. ....+. ...+. .+.-.++.+.. --.||.-..+|.++.+++.
T Consensus 51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~~---~s~~l~--~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 51 LEYLDGHILESTGLYGFSKIRVSDLTTGQEI---FSEKLA--PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred eeeeCCEEEEeccccccceeEEEeccCceEE---EEeecC--CccccccceeeccceEEEEEeccceeEEEChHHhhhhc
Confidence 444444 3333333 346899999877531 111111 11111 12222444433 3478888999999988887
Q ss_pred EEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeec
Q 011711 351 TLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 351 ~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 430 (479)
.+. ..+.-..+..+++.|+.+....+++.-|.++-..............+..+.-.---+|. +.+-.-.+..|...|.
T Consensus 126 ~~~-y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~-lyANVw~t~~I~rI~p 203 (262)
T COG3823 126 RFS-YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGE-LYANVWQTTRIARIDP 203 (262)
T ss_pred ccc-cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccE-EEEeeeeecceEEEcC
Confidence 776 33455778888777777776777777776654433333322222222222111114554 5555555556666677
Q ss_pred CCCceeeeeec-------------cCceEEEEECCCc--eEEEE
Q 011711 431 PSFMERGRIFS-------------RREVRVIETGPDG--LFFTG 459 (479)
Q Consensus 431 ~~~~~~~~~~~-------------~~~v~~l~~s~~g--~l~sg 459 (479)
++++....+.. .+-.+.+++.|++ .++||
T Consensus 204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 77766655531 3457889999988 55565
No 413
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.69 E-value=0.84 Score=27.90 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=31.2
Q ss_pred CCCCcEEEEEeCCCeEEEeecCCCceeeeeeccCceEEEEEC
Q 011711 410 PDGNPVLICSCNDDSVHLYELPSFMERGRIFSRREVRVIETG 451 (479)
Q Consensus 410 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~l~~s 451 (479)
|+++.++++...+++|.++|..+++.+..+........+.++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 567767776767899999999998888877765555555553
No 414
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.66 E-value=10 Score=39.50 Aligned_cols=144 Identities=16% Similarity=0.169 Sum_probs=82.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEE------EEe----------------CCCCCcEEEEEc----CCEEEEEeCCCeEE
Q 011711 326 GKRLYSGSMDNTIRVWDLDTLEAVM------TLN----------------GHTDAPMSLLCW----DQYLLSCSLDNTIK 379 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~~~~~~~------~~~----------------~h~~~v~~~~~~----~~~l~s~s~dg~i~ 379 (479)
.++++++. .+.|.||+++...... .+. .-...|..+... .+.|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56666654 6889999886532211 110 001123333332 36899999999999
Q ss_pred EEEcCCCc--------ce---------EEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCcee----ee
Q 011711 380 VWIMTEEG--------NL---------EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMER----GR 438 (479)
Q Consensus 380 iwd~~~~~--------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~ 438 (479)
+|.+++-- .. .-......+..+..+... +.+...+||++++...|.||-....... ..
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh-~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIH-DYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEE-ecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 99653110 00 001111112233333322 1244458998988888888866442111 12
Q ss_pred eeccCceEEEEECCC-----c--eEEEEcCCCcEEEEEec
Q 011711 439 IFSRREVRVIETGPD-----G--LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 439 ~~~~~~v~~l~~s~~-----g--~l~sg~~dg~v~vw~~~ 471 (479)
..+...|.+++|-++ | .+++++-.|.+.+|++.
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 234677899999764 3 67889999999999983
No 415
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.40 E-value=13 Score=35.16 Aligned_cols=110 Identities=8% Similarity=-0.022 Sum_probs=53.1
Q ss_pred EEEEEcCCEEEEEeCC-----CeEEEEECCCCcE---EEEEeCCCC---CcEEEEEcCCEEEEEeC-----CCeEEEEEc
Q 011711 320 TCLAVGGKRLYSGSMD-----NTIRVWDLDTLEA---VMTLNGHTD---APMSLLCWDQYLLSCSL-----DNTIKVWIM 383 (479)
Q Consensus 320 ~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~---~~~~~~h~~---~v~~~~~~~~~l~s~s~-----dg~i~iwd~ 383 (479)
.++..++.+++.|+.+ ..+..+|+.+.+- ...+..-.. ........+...+.|+. ...+..||+
T Consensus 67 ~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 67 ASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred EEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence 3444566677777754 3577778776553 122221111 11222333566666664 246788888
Q ss_pred CCCcceEEecccc-CccceEEEeeeeCCCCCcEEEEEeCCC----eEEEeecCCCc
Q 011711 384 TEEGNLEVAYTHN-EDHGVLALGGLNDPDGNPVLICSCNDD----SVHLYELPSFM 434 (479)
Q Consensus 384 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~ 434 (479)
.+.+= ..+.... ......... ..+++ +.+.|+.++ .+..||..+.+
T Consensus 147 ~~~~W-~~~~~~p~~~r~~~~~~---~~~~~-iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 147 ETQEW-FELPDFPGEPRVQPVCV---KLQNE-LYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCCCe-eECCCCCCCCCCcceEE---EECCE-EEEEcCCCCccccceEEEecCCCe
Confidence 76532 1221111 111111111 13444 667776653 35678877643
No 416
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=90.72 E-value=0.074 Score=29.29 Aligned_cols=24 Identities=50% Similarity=1.108 Sum_probs=17.0
Q ss_pred ccceeeeeec-CccCC-CCCCccccc
Q 011711 57 KKVLCVYFLE-GRCNR-NPCRFAHTE 80 (479)
Q Consensus 57 ~~~~~~~~~~-~~~~~-~p~~~l~~~ 80 (479)
+..+|.+|.. |.|.+ .-|+|.|.+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred ccccChhhccCCccCCCCCcCccCCC
Confidence 3468999988 99999 669999964
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.72 E-value=7.6 Score=38.92 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=87.3
Q ss_pred CCCeEEEEEc-CCEEEEEe---CCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcC------CEEEEEeCCCeEEEEEcCC
Q 011711 316 TRPVTCLAVG-GKRLYSGS---MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD------QYLLSCSLDNTIKVWIMTE 385 (479)
Q Consensus 316 ~~~i~~l~~~-~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~------~~l~s~s~dg~i~iwd~~~ 385 (479)
-.++..++|. |+.++--. .+|.+++=|. +.+..| ..|..+.|.. ..+++......|.||.+..
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 3478889995 66544322 3444443222 223333 3466666651 3677777888999998752
Q ss_pred C-----cc-eEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC--CCceeeeeeccCceEEEEECCCc--e
Q 011711 386 E-----GN-LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP--SFMERGRIFSRREVRVIETGPDG--L 455 (479)
Q Consensus 386 ~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~v~~l~~s~~g--~ 455 (479)
. +. ........++...+.-.+.|+|... +|+.-.....-.++++. +......+...+-|.|.+|.+|| +
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 2 11 1122223444555666778889887 55555444433445543 33444555668899999999999 4
Q ss_pred EEEEcCCCcEEEEEecc
Q 011711 456 FFTGDGTGMLSVWKILA 472 (479)
Q Consensus 456 l~sg~~dg~v~vw~~~~ 472 (479)
+++.++.=.-++||=..
T Consensus 171 VVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEeCCeEEEEEecCch
Confidence 45555555667777443
No 418
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.69 E-value=1.4 Score=27.31 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=26.0
Q ss_pred ccEEEEEeCCCC---CEEEEEeCCCcEEEEECCCC
Q 011711 193 KAVSGIALPLRS---DKLYSGSRDGTVQLWDCHTG 224 (479)
Q Consensus 193 ~~V~~l~~s~~~---~~l~s~s~Dg~v~vwd~~~~ 224 (479)
++|.++.|+|+. ++|+-+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 478999999754 47888777899999999853
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.30 E-value=6.1 Score=40.62 Aligned_cols=59 Identities=8% Similarity=0.069 Sum_probs=43.8
Q ss_pred eeEeCCCCCeEEEeecCCCceee-EEEecccccEEEEEe--CCCCCEEEEEeCCCcEEEEECC
Q 011711 163 NCVKGDECRFWHSWFCGEGFTML-AKLEGHKKAVSGIAL--PLRSDKLYSGSRDGTVQLWDCH 222 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~-~~~~~H~~~V~~l~~--s~~~~~l~s~s~Dg~v~vwd~~ 222 (479)
.++..+....+.|||...+.-.. ..+ ...+.|.++.| .|+++.+++.+....|.++--.
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 33444555789999998873222 222 45788999999 6899999999999999999643
No 420
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.13 E-value=22 Score=38.29 Aligned_cols=169 Identities=12% Similarity=0.088 Sum_probs=103.4
Q ss_pred eEEEeecCCCceeeEEEecc----cccEEEEEeCCCCC--EEEEEe-----------CCCcEEEEECC-CCc---eEEEE
Q 011711 172 FWHSWFCGEGFTMLAKLEGH----KKAVSGIALPLRSD--KLYSGS-----------RDGTVQLWDCH-TGQ---SASVI 230 (479)
Q Consensus 172 ~i~vw~~~~~~~~~~~~~~H----~~~V~~l~~s~~~~--~l~s~s-----------~Dg~v~vwd~~-~~~---~~~~~ 230 (479)
.|++.|...+ +.+..+.-. .-.|.++.|+..+. +++.+. .+|.++.|++- .|+ .+...
T Consensus 854 ~I~~~d~~s~-~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSG-KIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred eEEEEcCCCC-ceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence 4788887766 333333221 12466667754433 333332 13446666642 333 33444
Q ss_pred ecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEE---ecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCccc
Q 011711 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFS---LDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307 (479)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~---~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 307 (479)
.....+.++.+....+.+|....+++|++...+... .+.....|..+.+....+++|...-.|.++..+..... -
T Consensus 933 ~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~--l 1010 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQ--L 1010 (1205)
T ss_pred CCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCe--E
Confidence 456677788887789999999999999998877643 22345678888888999999988777777665554321 1
Q ss_pred ceeeecCCCCCeEEEEE-cCCEEEEEeCCCeEEEEEC
Q 011711 308 LAALLKGHTRPVTCLAV-GGKRLYSGSMDNTIRVWDL 343 (479)
Q Consensus 308 ~~~~~~~h~~~i~~l~~-~~~~l~sgs~dg~I~iwd~ 343 (479)
....-..-...|+++.+ +.+.++.+..-|.+.+..+
T Consensus 1011 ~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred EEEeCCCccceeeEEEEecCCceeeccccCcEEEEEC
Confidence 11111222344666655 5777887777777666544
No 421
>PLN02153 epithiospecifier protein
Probab=89.78 E-value=19 Score=34.37 Aligned_cols=107 Identities=11% Similarity=0.208 Sum_probs=51.3
Q ss_pred EEEcCCEEEEEeCC-----CcEEEEEccCCCCCcccceeeecC----CCCCeEEE-EEcCCEEEEEeCC-----------
Q 011711 277 MVVANEMLFAGAQD-----GNILVWKGIPNTQNPFQLAALLKG----HTRPVTCL-AVGGKRLYSGSMD----------- 335 (479)
Q Consensus 277 ~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~----h~~~i~~l-~~~~~~l~sgs~d----------- 335 (479)
+.+...+++.|+.+ ..+.+||..++. ++.+..+.. ....-.++ ..++..++.|+.+
T Consensus 82 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~---W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 82 VAVGTKLYIFGGRDEKREFSDFYSYDTVKNE---WTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EEECCEEEEECCCCCCCccCcEEEEECCCCE---EEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc
Confidence 33444466666643 357788876643 222221110 00111122 2346666777653
Q ss_pred CeEEEEECCCCcEEEEEeCC------CCCcEEEEEcCCEEEEEeCC-------------CeEEEEEcCCCc
Q 011711 336 NTIRVWDLDTLEAVMTLNGH------TDAPMSLLCWDQYLLSCSLD-------------NTIKVWIMTEEG 387 (479)
Q Consensus 336 g~I~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~l~s~s~d-------------g~i~iwd~~~~~ 387 (479)
..+.+||+.+.+-. .+... ........+.+++++.++.+ ..+.+||..+.+
T Consensus 159 ~~v~~yd~~~~~W~-~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 159 RTIEAYNIADGKWV-QLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred ceEEEEECCCCeEe-eCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 25778898875432 12111 11112233446655555432 458888887654
No 422
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=89.42 E-value=21 Score=34.32 Aligned_cols=242 Identities=13% Similarity=0.083 Sum_probs=120.4
Q ss_pred CeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC----------------
Q 011711 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA---------------- 234 (479)
Q Consensus 171 ~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~---------------- 234 (479)
+.+.+||++++ + +..+......+....|+|+|+.++-.. ++.|.+++..+++..+.-..+.
T Consensus 23 ~~y~i~d~~~~-~-~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 23 GDYYIYDIETG-E-ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEETTTT-E-EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred eeEEEEecCCC-c-eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 67899999987 3 333333367899999999999998886 4789999988775443222110
Q ss_pred ----ceeEEEeCCCEEEEE--cCC-----------------------------------eEEEEEcCCCceEEe------
Q 011711 235 ----EVGSLICEGPWVFVG--MPN-----------------------------------VVKAWHIESSAEFSL------ 267 (479)
Q Consensus 235 ----~~~~~~~~~~~l~~~--~~~-----------------------------------~i~v~~~~~~~~~~~------ 267 (479)
.....+++++.|+.. .+. .+.++++.+++...+
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence 111233455544331 111 344566666554221
Q ss_pred cCCCccEEEEEEcCC-E-EEEE--eCCC---cEEEEEccCCCCCcccceeeecCCCCCeEEEEE---c-CCEEEEEeCCC
Q 011711 268 DGPVGEVYSMVVANE-M-LFAG--AQDG---NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV---G-GKRLYSGSMDN 336 (479)
Q Consensus 268 ~~~~~~v~~~~~~~~-~-l~~g--~~dg---~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~---~-~~~l~sgs~dg 336 (479)
......+..+.|.++ . |++. ..+. .+.+.|..++... ........+.-..-....+ + +.++.....||
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~-~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G 258 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETR-VVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG 258 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCE-EEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCcee-EEEEecCCcceeeecccccccCCCCEEEEEEEcCC
Confidence 133455677777666 2 4433 2222 2555666554321 0011111111111112222 2 44555566777
Q ss_pred e--EEEEECCCCcEEEEEeCCCCCcEEEEE-c--CCE-EEEEeCCC----eEEEEEcCCCcceEEeccccCccceEEEee
Q 011711 337 T--IRVWDLDTLEAVMTLNGHTDAPMSLLC-W--DQY-LLSCSLDN----TIKVWIMTEEGNLEVAYTHNEDHGVLALGG 406 (479)
Q Consensus 337 ~--I~iwd~~~~~~~~~~~~h~~~v~~~~~-~--~~~-l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 406 (479)
. |.+++...+. ...+....-.|..+.. + ++. .+++..++ .|..-++..+..+..+....... ...
T Consensus 259 ~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~----~~~ 333 (353)
T PF00930_consen 259 YRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH----YSA 333 (353)
T ss_dssp SEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT----EEE
T ss_pred CcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc----eEE
Confidence 5 4455655554 3455544455655443 3 344 44555432 45555555234444454444433 334
Q ss_pred eeCCCCCcEEEEEeC
Q 011711 407 LNDPDGNPVLICSCN 421 (479)
Q Consensus 407 ~~~~~~~~~l~s~~~ 421 (479)
.++|+++.++...+.
T Consensus 334 ~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 334 SFSPDGKYYVDTYSG 348 (353)
T ss_dssp EE-TTSSEEEEEEES
T ss_pred EECCCCCEEEEEEcC
Confidence 446999966666543
No 423
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.35 E-value=2.4 Score=37.51 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=43.8
Q ss_pred CCCCcEEEEEeCCCeEEEeecCCCceeeee---------------eccCceEEEEECCCc-eEEEEcCCCcEEEEEec
Q 011711 410 PDGNPVLICSCNDDSVHLYELPSFMERGRI---------------FSRREVRVIETGPDG-LFFTGDGTGMLSVWKIL 471 (479)
Q Consensus 410 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---------------~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~ 471 (479)
.+++ ++++-+.+|.+++||+.+++..... .....|..+.++.+| -+++- .+|..+.|+.+
T Consensus 20 ~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 20 CNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred eCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 4566 5777788999999999987765444 123668899999999 44444 46778888764
No 424
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=89.16 E-value=17 Score=32.88 Aligned_cols=197 Identities=14% Similarity=0.054 Sum_probs=100.0
Q ss_pred CeEEEeccCC-eeEeCCCCCeEEEeecCCCceeeEEEecc-cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCce-EEE
Q 011711 153 KNVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGH-KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS-ASV 229 (479)
Q Consensus 153 ~~~c~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~H-~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~-~~~ 229 (479)
+.+.+.+..+ ..+..++.+.|...+.+ + +.++.+.-. .+...+|++..++.++++.-.++.+.+.++..... +..
T Consensus 25 SGLTy~pd~~tLfaV~d~~~~i~els~~-G-~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~ 102 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEPGEIYELSLD-G-KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR 102 (248)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E
T ss_pred cccEEcCCCCeEEEEECCCCEEEEEcCC-C-CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch
Confidence 3455665545 44566778888888864 4 566666543 36688899988887777766689999998844221 100
Q ss_pred EecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccC--CCCCc
Q 011711 230 INLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIP--NTQNP 305 (479)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~--~~~~~ 305 (479)
-. +.-+.+. ....+...+-.++|++. .|+++-+..-..+|.+.. ....
T Consensus 103 ~~----------------------~~~~~l~-----~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~- 154 (248)
T PF06977_consen 103 AD----------------------VQKISLG-----FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD- 154 (248)
T ss_dssp EE----------------------EEEEE--------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--
T ss_pred hh----------------------ceEEecc-----cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc-
Confidence 00 0000000 00124445778888765 666677776677776654 1110
Q ss_pred ccc-----eeeecCCCCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCC---------CCcEEEEEc-CC
Q 011711 306 FQL-----AALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT---------DAPMSLLCW-DQ 367 (479)
Q Consensus 306 ~~~-----~~~~~~h~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~---------~~v~~~~~~-~~ 367 (479)
... ..........+.+++++ +.+++.......|..+| .+|+.+..+.-.. ...-.++++ ..
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 000 00012234456788886 67888888899999999 6777776665332 234566665 23
Q ss_pred EEEEEeCCCeEEE
Q 011711 368 YLLSCSLDNTIKV 380 (479)
Q Consensus 368 ~l~s~s~dg~i~i 380 (479)
.|+..++-+..++
T Consensus 234 ~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 234 NLYIVSEPNLFYR 246 (248)
T ss_dssp -EEEEETTTEEEE
T ss_pred CEEEEcCCceEEE
Confidence 4445555444443
No 425
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.10 E-value=22 Score=34.21 Aligned_cols=143 Identities=14% Similarity=0.133 Sum_probs=81.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEE------cCCE--EEEEe-CC---CeEEEEEcCCC-cceEEe
Q 011711 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC------WDQY--LLSCS-LD---NTIKVWIMTEE-GNLEVA 392 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~------~~~~--l~s~s-~d---g~i~iwd~~~~-~~~~~~ 392 (479)
..+++....++-+.+||++ |+.++.+.. +....+.. .++. |+.++ .+ ..|++|.+... ..+..+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 4577777888999999987 455566642 23333322 2332 33333 32 57999987632 233333
Q ss_pred cccc-----CccceEEEeeeeCC-CCCcEEEEEeCCCeEEEeecC---CC----ceeeeeeccCceEEEEECCCc-eEEE
Q 011711 393 YTHN-----EDHGVLALGGLNDP-DGNPVLICSCNDDSVHLYELP---SF----MERGRIFSRREVRVIETGPDG-LFFT 458 (479)
Q Consensus 393 ~~~~-----~~~~~~~~~~~~~~-~~~~~l~s~~~dg~v~iwd~~---~~----~~~~~~~~~~~v~~l~~s~~g-~l~s 458 (479)
.... .......+++..++ +|..+++....+|.+..|.+. .+ +.+.++....++..+...... .|..
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYv 224 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYV 224 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEE
Confidence 2111 11123455555555 567677778899999888774 22 345556667788999998776 8889
Q ss_pred EcCCCcEEEEEec
Q 011711 459 GDGTGMLSVWKIL 471 (479)
Q Consensus 459 g~~dg~v~vw~~~ 471 (479)
+-+|--|.-|+.+
T Consensus 225 gEE~~GIW~y~Ae 237 (381)
T PF02333_consen 225 GEEDVGIWRYDAE 237 (381)
T ss_dssp EETTTEEEEEESS
T ss_pred ecCccEEEEEecC
Confidence 9888655444443
No 426
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=89.10 E-value=13 Score=38.83 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=67.7
Q ss_pred CccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEEE
Q 011711 271 VGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVM 350 (479)
Q Consensus 271 ~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 350 (479)
...+.++.+....+..|.-||++-.+--........++...+..-..+|.++++..+.+ -++.+|.|.++...+.....
T Consensus 581 ~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~lPvrsla~~ed~~-was~gG~V~vi~~tt~~~~~ 659 (925)
T KOG3522|consen 581 HESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSLPVRSLAFQEDFV-WASEGGCVHVIPSTTFIRSW 659 (925)
T ss_pred hhhhhhhhccccccccCccCCccccccCCCCCCCCCCCccccccCCccccchhhhhcee-eeecCCceEEEechhccccc
Confidence 34566777777777778888887766432221111112222333455777777765544 45679999999998877777
Q ss_pred EEeCCC---CCcEEEEEcCCEEEEEeCCC-eEEEEEcCC
Q 011711 351 TLNGHT---DAPMSLLCWDQYLLSCSLDN-TIKVWIMTE 385 (479)
Q Consensus 351 ~~~~h~---~~v~~~~~~~~~l~s~s~dg-~i~iwd~~~ 385 (479)
.+..|. ..|+.+...+.-+..+-..| .+++++.++
T Consensus 660 ~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 660 DLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTET 698 (925)
T ss_pred hhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccc
Confidence 766554 44677777755444333333 455554443
No 427
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.07 E-value=10 Score=36.97 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=39.1
Q ss_pred eeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 011711 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (479)
Q Consensus 184 ~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 231 (479)
....|......+.+|+.+|++++.|+...=|.|.++|+.++..++..+
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 344566667789999999999988888777999999999988776665
No 428
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.97 E-value=10 Score=30.24 Aligned_cols=83 Identities=19% Similarity=0.178 Sum_probs=47.3
Q ss_pred EEEEEeCCCeEEEEEcCCCcce-------EEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee
Q 011711 368 YLLSCSLDNTIKVWIMTEEGNL-------EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF 440 (479)
Q Consensus 368 ~l~s~s~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 440 (479)
.|+.++.-|+|.|++....... ..+......+.+++.......++...|+.|+ ...+..||+.....+....
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyke 90 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYKE 90 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhhh
Confidence 4555556666666654432211 1222233344444443322233444777675 6679999998877776666
Q ss_pred ccCceEEEEEC
Q 011711 441 SRREVRVIETG 451 (479)
Q Consensus 441 ~~~~v~~l~~s 451 (479)
-.+.|.++.+.
T Consensus 91 ~~DGvn~i~~g 101 (136)
T PF14781_consen 91 VPDGVNAIVIG 101 (136)
T ss_pred CccceeEEEEE
Confidence 67788888774
No 429
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.66 E-value=25 Score=34.31 Aligned_cols=144 Identities=9% Similarity=0.020 Sum_probs=78.2
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEecCCceeEEE--eCCCEEEEEcCCeEEEEEcCCCc----eEE-
Q 011711 195 VSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-SASVINLGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSA----EFS- 266 (479)
Q Consensus 195 V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~-~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~v~~~~~~~----~~~- 266 (479)
...+..++++.+++.+..-..++-||-.... ..........+..+. .++.+++++..+.+..-+-.... .+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~ 320 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEE 320 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceee
Confidence 3445566777766665543333344432211 222223333344443 47888888888776543332211 111
Q ss_pred ec--CCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEE
Q 011711 267 LD--GPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVW 341 (479)
Q Consensus 267 ~~--~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iw 341 (479)
.. .....+.++.+.++ .+++++.+|.+.... ..++. ++.......-....+.+.|. .+..+..+.+|.|.-|
T Consensus 321 ~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~t--W~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 321 ADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKS--WKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred cccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcc--eeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 11 12235888888766 788888899877664 22222 22222222334567888875 5666677788887655
No 430
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.32 E-value=17 Score=32.02 Aligned_cols=86 Identities=15% Similarity=0.075 Sum_probs=57.9
Q ss_pred EEEEEc---CCEEEEEeCCCeEEEEE--CCCCc-----EEEEEeCC------CCCcEEEEEcCCEEEEEeCCCeEEEEEc
Q 011711 320 TCLAVG---GKRLYSGSMDNTIRVWD--LDTLE-----AVMTLNGH------TDAPMSLLCWDQYLLSCSLDNTIKVWIM 383 (479)
Q Consensus 320 ~~l~~~---~~~l~sgs~dg~I~iwd--~~~~~-----~~~~~~~h------~~~v~~~~~~~~~l~s~s~dg~i~iwd~ 383 (479)
+.++|+ ..+.++-+.+-+|.-|| ..+|. .+..++.. ...-+++.-.|++.+++-..++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 356775 34556667788887787 45543 33333321 1113555555888888889999999999
Q ss_pred CCCcceEEeccccCccceEEEe
Q 011711 384 TEEGNLEVAYTHNEDHGVLALG 405 (479)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~ 405 (479)
.+++.+..+......+++.++.
T Consensus 241 ~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEec
Confidence 9999988888776666666654
No 431
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.26 E-value=28 Score=34.41 Aligned_cols=138 Identities=9% Similarity=0.096 Sum_probs=76.3
Q ss_pred EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEE----c---CCEEEEEeCCCeEEEEECCCCc-EEEEE--
Q 011711 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV----G---GKRLYSGSMDNTIRVWDLDTLE-AVMTL-- 352 (479)
Q Consensus 283 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~----~---~~~l~sgs~dg~I~iwd~~~~~-~~~~~-- 352 (479)
++..|.....++-.|+..+. ++.....|..-+..... . ...-++|-.+..|.-.|.+-.. .+...
T Consensus 482 i~~dg~~~~kLykmDIErGk-----vveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGK-----VVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred EEecCCCcccceeeecccce-----eeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 44455666667666766654 35556666554322211 1 3334556666677767766422 22111
Q ss_pred ---eCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 011711 353 ---NGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (479)
Q Consensus 353 ---~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd 429 (479)
.....--....-.+.+++.++..|-|++||--.......+......+..+.. +.+|+.+|+++ ...+.+-|
T Consensus 557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idv----ta~Gk~ilaTC--k~yllL~d 630 (776)
T COG5167 557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDV----TANGKHILATC--KNYLLLTD 630 (776)
T ss_pred hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEe----ecCCcEEEEee--cceEEEEe
Confidence 1111111122223679999999999999996544333344444555544444 37888666654 56777777
Q ss_pred cC
Q 011711 430 LP 431 (479)
Q Consensus 430 ~~ 431 (479)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 64
No 432
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.60 E-value=26 Score=33.15 Aligned_cols=111 Identities=12% Similarity=0.085 Sum_probs=52.7
Q ss_pred EEEcCCEEEEEeCC-----CcEEEEEccCCCCC-cccceeeecCCCCCeEEEEEcCCEEEEEeC-----CCeEEEEECCC
Q 011711 277 MVVANEMLFAGAQD-----GNILVWKGIPNTQN-PFQLAALLKGHTRPVTCLAVGGKRLYSGSM-----DNTIRVWDLDT 345 (479)
Q Consensus 277 ~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~-~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~-----dg~I~iwd~~~ 345 (479)
+...+.+++.|+.+ ..+..+|+.+..-. .......+........+...++...+.|+. ...+..||+.+
T Consensus 69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 69 VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 33434455666654 34666776654310 001111111111112233345666667664 24688889887
Q ss_pred CcEEE--EEeCC-CCCcEEEEEcCCEEEEEeCCC----eEEEEEcCCCc
Q 011711 346 LEAVM--TLNGH-TDAPMSLLCWDQYLLSCSLDN----TIKVWIMTEEG 387 (479)
Q Consensus 346 ~~~~~--~~~~h-~~~v~~~~~~~~~l~s~s~dg----~i~iwd~~~~~ 387 (479)
.+-.. .+... ..........+++.+.|+.++ .+.+||..+.+
T Consensus 149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 54322 12111 111222334467777777654 24578877653
No 433
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.34 E-value=0.23 Score=47.89 Aligned_cols=225 Identities=16% Similarity=0.199 Sum_probs=122.7
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEE
Q 011711 198 IALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSM 277 (479)
Q Consensus 198 l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~ 277 (479)
..|-+.+.-++.++.+-.|..||-. ++...... ..+....+
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n--------------------------------------~tg~aldm 80 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKA-GQVILELN--------------------------------------PTGKALDM 80 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhh-cceecccC--------------------------------------CchhHhhh
Confidence 3455666567777777888888843 33222211 23334455
Q ss_pred EEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCCCcEEEEE
Q 011711 278 VVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL 352 (479)
Q Consensus 278 ~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~ 352 (479)
+|+.+ .++.+-..+.+.+||+.+...... ..-..|.... +.|+ ...++.+...|.+.|++..+.+.+-..
T Consensus 81 ~wDkegdvlavlAek~~piylwd~n~eytqqL---E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~ 155 (615)
T KOG2247|consen 81 AWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL---ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM 155 (615)
T ss_pred hhccccchhhhhhhcCCCeeechhhhhhHHHH---hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhh
Confidence 55543 566677889999999987643111 1111122222 4555 566778888999999999887776666
Q ss_pred eCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceE--EE-eeeeCCCCCcEEEEEeCCCeEEEe
Q 011711 353 NGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVL--AL-GGLNDPDGNPVLICSCNDDSVHLY 428 (479)
Q Consensus 353 ~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~l~s~~~dg~v~iw 428 (479)
-.|...++++++. .++.+.++.|..+.+-...+.. .........+...- .. .-.|..-|. .+.+. ..+.+++.
T Consensus 156 Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~qeget-a~ltevggepdnm~~~y~k~n~w~kage-~m~sV-vsgKkhl~ 232 (615)
T KOG2247|consen 156 GKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQEGET-ASLTEVGGEPDNMDFFYGKVNGWGKAGE-TMVSV-VSGKKHLM 232 (615)
T ss_pred cccccceeEEEecccceeeecCcHHHHHHhhhccce-eeeeeccCccchhhhheeeeeccccccc-eeeee-eecHHHHH
Confidence 6688889999988 7888888887766554332211 11111111111110 00 011222233 22221 11222221
Q ss_pred --ec---CCCceeeeee-ccCceEEEEECCCceEEEEcCCCcEEEEEe
Q 011711 429 --EL---PSFMERGRIF-SRREVRVIETGPDGLFFTGDGTGMLSVWKI 470 (479)
Q Consensus 429 --d~---~~~~~~~~~~-~~~~v~~l~~s~~g~l~sg~~dg~v~vw~~ 470 (479)
.. +....+ .+. ..+.+.+..|--||.|.-|.+-|.|..-..
T Consensus 233 yak~nE~D~pval-~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS~ 279 (615)
T KOG2247|consen 233 YAKYNELDEPVAL-QFQEKYGNIHCYRWYLDGYILIGFDAGYIVSISA 279 (615)
T ss_pred HHhhcCCCCccce-EeeecCCceeEEEEeccccccccccceeEEEEec
Confidence 11 111112 222 256788889988887777777776665553
No 434
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=87.20 E-value=28 Score=34.92 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=80.2
Q ss_pred CCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCC-CCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEE
Q 011711 315 HTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT-DAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEV 391 (479)
Q Consensus 315 h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~ 391 (479)
-..+|..+.++ .+.+.+|+.|| +..||..+++.++.-.... ..|..+..+ +..+..|+.+| +.+.+.+......
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn- 239 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRASN- 239 (671)
T ss_pred cCccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhccccc-
Confidence 35678888888 77888898887 6678888887776555444 456666555 66788888777 6777665421111
Q ss_pred eccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee----ccCceEEEEECCCceEEEEcCCCcEEE
Q 011711 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF----SRREVRVIETGPDGLFFTGDGTGMLSV 467 (479)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~l~~s~~g~l~sg~~dg~v~v 467 (479)
.. ..-+...+.. ...+.+|. +-.|+..|..+ +..+......... .-..|.++.-..+|-|-+++.+|.+++
T Consensus 240 ~~-~~lp~~~I~l-l~qD~qG~--lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~ 314 (671)
T COG3292 240 WG-PMLPSGNILL-LVQDAQGE--LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRY 314 (671)
T ss_pred cC-CCCcchheee-eecccCCC--EEEeeccccee-EecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEE
Confidence 11 1111111111 11123443 44455555432 2233222221111 134566777777777777777776654
No 435
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.16 E-value=18 Score=35.29 Aligned_cols=127 Identities=16% Similarity=0.263 Sum_probs=59.8
Q ss_pred CCCeEEEEECCCCcEEEEEeCCCCC--cEEEEEc--C--C-EEEEEeCCCeEEEEEc-CCCc----ceEEecccc-----
Q 011711 334 MDNTIRVWDLDTLEAVMTLNGHTDA--PMSLLCW--D--Q-YLLSCSLDNTIKVWIM-TEEG----NLEVAYTHN----- 396 (479)
Q Consensus 334 ~dg~I~iwd~~~~~~~~~~~~h~~~--v~~~~~~--~--~-~l~s~s~dg~i~iwd~-~~~~----~~~~~~~~~----- 396 (479)
...++.+||+.+.+.++++..-... +..+.+. . . -++.+....+|..|-- +.+. .+..+....
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 4578999999999999999865443 4455554 1 2 2333334555555533 2221 111111100
Q ss_pred --------CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCC---ceeeeeec-----------------cCceEEE
Q 011711 397 --------EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSF---MERGRIFS-----------------RREVRVI 448 (479)
Q Consensus 397 --------~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~-----------------~~~v~~l 448 (479)
..+..+...+..|.|.+.+.++.-.+|.|+.||+... ++..++.- .+...-+
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 0012333444456899977777778999999999763 33333321 2335778
Q ss_pred EECCCc-e-EEEEc
Q 011711 449 ETGPDG-L-FFTGD 460 (479)
Q Consensus 449 ~~s~~g-~-l~sg~ 460 (479)
+.|-|| + .+|.|
T Consensus 380 qlS~DGkRlYvTnS 393 (461)
T PF05694_consen 380 QLSLDGKRLYVTNS 393 (461)
T ss_dssp EE-TTSSEEEEE--
T ss_pred EEccCCeEEEEEee
Confidence 899999 4 44433
No 436
>PRK10115 protease 2; Provisional
Probab=87.06 E-value=45 Score=35.39 Aligned_cols=212 Identities=9% Similarity=-0.045 Sum_probs=102.4
Q ss_pred CCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCC------CcEEEEECCCC--ceEEEEecCCc-e-
Q 011711 167 GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD------GTVQLWDCHTG--QSASVINLGAE-V- 236 (479)
Q Consensus 167 g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D------g~v~vwd~~~~--~~~~~~~~~~~-~- 236 (479)
|++...|++-|+.++..+...+.+ .. ..++|.+|++.|+-...+ ..|..+++.++ +....+..... .
T Consensus 149 G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~ 225 (686)
T PRK10115 149 SRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFY 225 (686)
T ss_pred CcEEEEEEEEECCCCCCCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEE
Confidence 444567888888877322233322 11 458999998876655442 36788888888 33344443222 1
Q ss_pred -eEEEe-CCCEEEEE----cCCeEEEEEcC--CCce-EEecCCCccEEEEEEcCCEEEEEeC----CCcEEEEEccCCCC
Q 011711 237 -GSLIC-EGPWVFVG----MPNVVKAWHIE--SSAE-FSLDGPVGEVYSMVVANEMLFAGAQ----DGNILVWKGIPNTQ 303 (479)
Q Consensus 237 -~~~~~-~~~~l~~~----~~~~i~v~~~~--~~~~-~~~~~~~~~v~~~~~~~~~l~~g~~----dg~i~iwd~~~~~~ 303 (479)
..... ++.+++.. .++.+.+++.. .+.. ............+.-..+.+..-+. ...|...++...
T Consensus 226 ~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~-- 303 (686)
T PRK10115 226 VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDE-- 303 (686)
T ss_pred EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCc--
Confidence 11222 66665543 34578888842 2322 2222222333333322343333222 223444444321
Q ss_pred CcccceeeecCC-C-CCeEEEEEcCCE-EEEEeCCCeEEEE--ECCCCcEEEEEe-CCCCCcEEEEEc-----CCEEEEE
Q 011711 304 NPFQLAALLKGH-T-RPVTCLAVGGKR-LYSGSMDNTIRVW--DLDTLEAVMTLN-GHTDAPMSLLCW-----DQYLLSC 372 (479)
Q Consensus 304 ~~~~~~~~~~~h-~-~~i~~l~~~~~~-l~sgs~dg~I~iw--d~~~~~~~~~~~-~h~~~v~~~~~~-----~~~l~s~ 372 (479)
..+ ..+..+ . ..|..+.+.++. +++...+|.-+++ |+.++ .+..+. .....+..+... +.++++.
T Consensus 304 ~~~---~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (686)
T PRK10115 304 QQW---EELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGY 379 (686)
T ss_pred ccC---eEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEE
Confidence 111 223334 2 367778777554 5556667765554 44333 344443 222222222221 2344443
Q ss_pred eC---CCeEEEEEcCCCc
Q 011711 373 SL---DNTIKVWIMTEEG 387 (479)
Q Consensus 373 s~---dg~i~iwd~~~~~ 387 (479)
+. -+.+..+|..+.+
T Consensus 380 ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 380 SSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ecCCCCCEEEEEECCCCc
Confidence 33 3578888877653
No 437
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.82 E-value=14 Score=38.13 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=33.9
Q ss_pred EEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCC
Q 011711 254 VKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNT 302 (479)
Q Consensus 254 i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~ 302 (479)
|+++++.+.......-..+.+..+.|+.+ .|++...+|.+++|++....
T Consensus 66 I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 66 IRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred EEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhh
Confidence 44444444333333333447889999988 89999999999999986543
No 438
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.55 E-value=46 Score=34.96 Aligned_cols=111 Identities=13% Similarity=0.199 Sum_probs=64.7
Q ss_pred eEEEEEc----CCEEEEEeCCCeEEEEECCC-------C-------------cEEEEEeCCCCCcEEEEEc----CCEEE
Q 011711 319 VTCLAVG----GKRLYSGSMDNTIRVWDLDT-------L-------------EAVMTLNGHTDAPMSLLCW----DQYLL 370 (479)
Q Consensus 319 i~~l~~~----~~~l~sgs~dg~I~iwd~~~-------~-------------~~~~~~~~h~~~v~~~~~~----~~~l~ 370 (479)
|+-|... ...|+.+..||.|.+|.+++ . ++...+. -......+++. .++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 4555543 56788999999999997632 0 0112222 12356777775 46788
Q ss_pred EEeCCCeEEEEEcCCC-cceEEe--ccccCccceEEEeeee-CCCCCcEEEEEeCCCeEEEeec
Q 011711 371 SCSLDNTIKVWIMTEE-GNLEVA--YTHNEDHGVLALGGLN-DPDGNPVLICSCNDDSVHLYEL 430 (479)
Q Consensus 371 s~s~dg~i~iwd~~~~-~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~l~s~~~dg~v~iwd~ 430 (479)
+++....|.||-.... ...... ..+...+..++|.-.. +++|...+++++-.|.+-+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888866542 111111 1233334444443111 1233336778889999999888
No 439
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=86.45 E-value=34 Score=33.32 Aligned_cols=186 Identities=20% Similarity=0.205 Sum_probs=112.3
Q ss_pred EEEEcCC---EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeC---CCeEEEEECCCCc
Q 011711 276 SMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM---DNTIRVWDLDTLE 347 (479)
Q Consensus 276 ~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~---dg~I~iwd~~~~~ 347 (479)
.++..+. ..+....++.|.+.|...... ......+. .-..++++ ++.++++.. ++++.+.|..+.+
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~----~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTV----LGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccce----eeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 4444443 444555568999999665542 11112222 33455554 666666655 7899999999999
Q ss_pred EEEEEeCCCCCcEEEEEc--CCEEEEE-eCCCeEEEEEcCCCcceE-E---eccccCccceEEEeeeeCCCCCcEEEEEe
Q 011711 348 AVMTLNGHTDAPMSLLCW--DQYLLSC-SLDNTIKVWIMTEEGNLE-V---AYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (479)
Q Consensus 348 ~~~~~~~h~~~v~~~~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 420 (479)
...+...-..+ ..++++ ++.++.. ..++.|.+.|........ . ..........+.+ +|+|..+.+.-.
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v----~~~g~~~yV~~~ 226 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAV----DPDGNRVYVAND 226 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEE----CCCCCEEEEEec
Confidence 88886543333 555555 6655544 478999999976554332 0 0111111122333 589985555554
Q ss_pred CC--CeEEEeecCCCceeeeee-ccC-ceEEEEECCCc-eEEEE-cCCCcEEEEEecc
Q 011711 421 ND--DSVHLYELPSFMERGRIF-SRR-EVRVIETGPDG-LFFTG-DGTGMLSVWKILA 472 (479)
Q Consensus 421 ~d--g~v~iwd~~~~~~~~~~~-~~~-~v~~l~~s~~g-~l~sg-~~dg~v~vw~~~~ 472 (479)
.+ +.+...|..++....... ... ....+...|+| .+... ...+.|.+-|...
T Consensus 227 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 227 GSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred cCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 44 689999998877766522 222 67889999999 44443 4457777777655
No 440
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=85.79 E-value=31 Score=37.86 Aligned_cols=170 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred EEcCCCceEEecCCCccEEEEEEcCC--------EEEEEeC---------CCcEEEEEccC--------CCCCcccceee
Q 011711 257 WHIESSAEFSLDGPVGEVYSMVVANE--------MLFAGAQ---------DGNILVWKGIP--------NTQNPFQLAAL 311 (479)
Q Consensus 257 ~~~~~~~~~~~~~~~~~v~~~~~~~~--------~l~~g~~---------dg~i~iwd~~~--------~~~~~~~~~~~ 311 (479)
|.+...-.+....|.-.+..+..... +|++|.. -|.+.++|+-. .+....+.+..
T Consensus 1014 w~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~ 1093 (1366)
T KOG1896|consen 1014 WEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYI 1093 (1366)
T ss_pred cccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeeh
Q ss_pred ecCCCCCeEEEEEcCCEEEEEeCCCeEEEEEC-CCCcEEE-EEeCCCCCcEEEEEcCCEEEEEeCCCeEEEEEcCCCcce
Q 011711 312 LKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDL-DTLEAVM-TLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNL 389 (479)
Q Consensus 312 ~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~-~~~~~~~-~~~~h~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 389 (479)
+..+++|..++--..+|+++ ...+|.+|++ +....+. .|..-.-.+.++....++|+.|.--..|.+.-.......
T Consensus 1094 -eE~KGtVsavceV~G~l~~~-~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~r 1171 (1366)
T KOG1896|consen 1094 -EEQKGTVSAVCEVRGHLLSS-QGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYR 1171 (1366)
T ss_pred -hhcccceEEEEEeccEEEEc-cCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceE
Q ss_pred EEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 011711 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (479)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iw 428 (479)
..+.....+.-.....-.....++..++++..|+.|++|
T Consensus 1172 lsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1172 LSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred EEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
No 441
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.61 E-value=7.9 Score=39.78 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=44.9
Q ss_pred cCCEEEEEeCCCcEEEEEccCCCC--Ccccce--------eeec-----------CCCCCeEEEEE------cCCEEEEE
Q 011711 280 ANEMLFAGAQDGNILVWKGIPNTQ--NPFQLA--------ALLK-----------GHTRPVTCLAV------GGKRLYSG 332 (479)
Q Consensus 280 ~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~--------~~~~-----------~h~~~i~~l~~------~~~~l~sg 332 (479)
++..++++..||.+...+...... ..+... ..+. .....+..+++ +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566899999999999888765110 000000 0000 01122333333 37889999
Q ss_pred eCCCeEEEEECCCCcEEEEEeC
Q 011711 333 SMDNTIRVWDLDTLEAVMTLNG 354 (479)
Q Consensus 333 s~dg~I~iwd~~~~~~~~~~~~ 354 (479)
+.|+++|+||+.+++++.+...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEET
T ss_pred eCCCeEEEEECCCCeEEEEecc
Confidence 9999999999999999777643
No 442
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.91 E-value=31 Score=31.62 Aligned_cols=146 Identities=12% Similarity=0.221 Sum_probs=82.7
Q ss_pred eeeeecCc-----cCCCCCCcc---cccCCCCCCCCCCCCCCCCCCCCCceeccCCCCCCccccccccCCCCCCCCCCcc
Q 011711 61 CVYFLEGR-----CNRNPCRFA---HTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSL 132 (479)
Q Consensus 61 ~~~~~~~~-----~~~~p~~~l---~~~~p~~~~~gh~~~i~~~~~s~~g~~las~~~dg~i~iw~~~~~~~~~~~~~~~ 132 (479)
|.||+++. |.|+-..+| |...-.++..|-...+.++.|+|+.+.|.+-......-||=-.++.. ...+
T Consensus 48 ~a~~k~~~~~~~~~~r~~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl----irti 123 (316)
T COG3204 48 CAWFKAGQTNGLDLSRYIARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL----IRTI 123 (316)
T ss_pred eEEEeccccccccccchhhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCce----EEEe
Confidence 55666554 444322222 33344445566777799999999999998887555555552222111 0000
Q ss_pred ccccCcCCCCCeeeeeecCCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeE------EEe--cc-cccEEEEEeCCC
Q 011711 133 DCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLA------KLE--GH-KKAVSGIALPLR 203 (479)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~------~~~--~H-~~~V~~l~~s~~ 203 (479)
.+.. -+-++.+-+.-.....++...++.+.++.++.....+. .+. .+ ......++|.|.
T Consensus 124 PL~g------------~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~ 191 (316)
T COG3204 124 PLTG------------FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPV 191 (316)
T ss_pred cccc------------cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCC
Confidence 0000 01112333333334555666788888887765411111 111 12 566889999999
Q ss_pred CCEEEEEeCCCcEEEEECC
Q 011711 204 SDKLYSGSRDGTVQLWDCH 222 (479)
Q Consensus 204 ~~~l~s~s~Dg~v~vwd~~ 222 (479)
...|..+-+-.-+.|+.+.
T Consensus 192 ~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 192 DHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CceEEEEEccCCcEEEEEe
Confidence 9999988887777777765
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.82 E-value=10 Score=33.56 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=19.2
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCceE
Q 011711 200 LPLRSDKLYSGSRDGTVQLWDCHTGQSA 227 (479)
Q Consensus 200 ~s~~~~~l~s~s~Dg~v~vwd~~~~~~~ 227 (479)
+..++++|+..+.+|.+++||+.+++.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 4556677777777777777777766654
No 444
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.58 E-value=6.6 Score=23.74 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=25.1
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCc
Q 011711 202 LRSDKLYSGS-RDGTVQLWDCHTGQSASVINLGAE 235 (479)
Q Consensus 202 ~~~~~l~s~s-~Dg~v~vwd~~~~~~~~~~~~~~~ 235 (479)
|++++|+.+. .+++|.++|..+++.+..+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~ 35 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY 35 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC
Confidence 5667666554 578999999998888887776543
No 445
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.24 E-value=3.7 Score=25.44 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=24.7
Q ss_pred CceEEEEECCCc----eEEEEcCCCcEEEEEecc
Q 011711 443 REVRVIETGPDG----LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 443 ~~v~~l~~s~~g----~l~sg~~dg~v~vw~~~~ 472 (479)
+.++++.|+|+. +|+..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999743 777787889999999984
No 446
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.18 E-value=20 Score=39.61 Aligned_cols=148 Identities=13% Similarity=0.175 Sum_probs=82.3
Q ss_pred CCCeEEEeecCCCceeeEEEecccccEEEEEe-CC-------CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEE
Q 011711 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIAL-PL-------RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (479)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~-s~-------~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 240 (479)
-|..+.+|+.+++ .....+.+-...|..+.+ -| .=++|+..+.--.|.++-+.-.+......
T Consensus 97 iDn~L~lWny~~~-~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~--------- 166 (1311)
T KOG1900|consen 97 IDNNLFLWNYESD-NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS--------- 166 (1311)
T ss_pred eCCeEEEEEcCCC-CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc---------
Confidence 4689999999987 667778887788877765 22 22344444444455555443221110000
Q ss_pred eCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCC------Cc--------
Q 011711 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQ------NP-------- 305 (479)
Q Consensus 241 ~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~------~~-------- 305 (479)
++. +. +........|.++....+ .++.++.||.|+-.-...... ..
T Consensus 167 ---------------~f~--~~--~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~l 227 (1311)
T KOG1900|consen 167 ---------------IFN--TS--FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVL 227 (1311)
T ss_pred ---------------ccc--cc--eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHH
Confidence 000 00 122223345666664444 666666677443221111110 00
Q ss_pred ---ccceeee-cCCCCCeEEEEEc--CCEEEEEeCCCeEEEEECCC
Q 011711 306 ---FQLAALL-KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT 345 (479)
Q Consensus 306 ---~~~~~~~-~~h~~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~ 345 (479)
..-+..+ ..+.++|..|.++ .+.+++-+..|+|.+||+..
T Consensus 228 s~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 228 SSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 0001122 3567899999997 67789999999999999976
No 447
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.62 E-value=6.5 Score=40.41 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=32.0
Q ss_pred ccEEEEEeCC----CCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 011711 193 KAVSGIALPL----RSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (479)
Q Consensus 193 ~~V~~l~~s~----~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 233 (479)
+.+.+++++. +..+|++.+.|+++|+||+.+++++......
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 3456666666 7889999999999999999999998877654
No 448
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=83.12 E-value=4.7 Score=22.93 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=21.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEE
Q 011711 326 GKRLYSGSMDNTIRVWDLDTLEAVMTL 352 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~~~~~~~~~ 352 (479)
+..++.++.+|.+..+|.++++.+.++
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 446778888899999998888877653
No 449
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=83.02 E-value=39 Score=31.26 Aligned_cols=198 Identities=14% Similarity=0.086 Sum_probs=107.9
Q ss_pred eEEEeccCCeeEeCCCCCeEEEeecC------CCceeeEEEec-----ccccEEEEEeCCCCCE------------EEEE
Q 011711 154 NVCYHWLSGNCVKGDECRFWHSWFCG------EGFTMLAKLEG-----HKKAVSGIALPLRSDK------------LYSG 210 (479)
Q Consensus 154 ~~c~~~~~~~~~~g~~d~~i~vw~~~------~~~~~~~~~~~-----H~~~V~~l~~s~~~~~------------l~s~ 210 (479)
-+.+.+....-++....+...+||.. ....++-.+.. -....+.+.|+....+ ++.+
T Consensus 27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~ 106 (336)
T TIGR03118 27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV 106 (336)
T ss_pred eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence 34455555555666777889999986 22233444442 2346778888644333 6778
Q ss_pred eCCCcEEEEECCCCce---E--EEEecC--Ccee---EEEe--CCCEEEEE--cCCeEEEEEcCCCceEE--------ec
Q 011711 211 SRDGTVQLWDCHTGQS---A--SVINLG--AEVG---SLIC--EGPWVFVG--MPNVVKAWHIESSAEFS--------LD 268 (479)
Q Consensus 211 s~Dg~v~vwd~~~~~~---~--~~~~~~--~~~~---~~~~--~~~~l~~~--~~~~i~v~~~~~~~~~~--------~~ 268 (479)
++||+|.-|...-+.. . ..+... ..+. ++.. .+.+|++. ..++|.++|-.-..... +.
T Consensus 107 tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iP 186 (336)
T TIGR03118 107 TEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALP 186 (336)
T ss_pred eCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCC
Confidence 9999999999644332 1 222211 1111 1111 25566655 67888888765443211 01
Q ss_pred CCCccEEEEEEcCC--------------EEEEEeCCCcEEEEEccCCCCCcccceeee--cCCCCCeEEEEE--------
Q 011711 269 GPVGEVYSMVVANE--------------MLFAGAQDGNILVWKGIPNTQNPFQLAALL--KGHTRPVTCLAV-------- 324 (479)
Q Consensus 269 ~~~~~v~~~~~~~~--------------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~h~~~i~~l~~-------- 324 (479)
....+. -+.-... .=+.|..-|.|-+||....- ++.+ .+.-..-..|+.
T Consensus 187 agyAPF-nIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l------~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 187 AGYAPF-NVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQL------LRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCc-ceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcE------EEEeccCCcccCCceeeeChhhhCCC
Confidence 101111 1111112 12223445788888876542 3322 222223334444
Q ss_pred cCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCC
Q 011711 325 GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA 358 (479)
Q Consensus 325 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 358 (479)
++.+|+----||+|..||..+++.+..+....+.
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~ 293 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNH 293 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCC
Confidence 3666666667999999999999988888765443
No 450
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=82.32 E-value=5.8 Score=23.95 Aligned_cols=24 Identities=8% Similarity=-0.134 Sum_probs=15.0
Q ss_pred EEEEcCCEEEEEeCCCeEEEEEcC
Q 011711 361 SLLCWDQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 361 ~~~~~~~~l~s~s~dg~i~iwd~~ 384 (479)
+....+..++.++.||.+..+|.+
T Consensus 16 ~~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp --EECTSEEEEE-TTSEEEEEETT
T ss_pred CCEEECCEEEEEcCCCEEEEEeCC
Confidence 345556777777777777777764
No 451
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.84 E-value=54 Score=32.67 Aligned_cols=121 Identities=14% Similarity=0.039 Sum_probs=61.3
Q ss_pred eeEeCCCCCeEEEeecCCCceeeEEEecc---------------------cccEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 011711 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGH---------------------KKAVSGIALPLRSDKLYSGSRDGTVQLWDC 221 (479)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~H---------------------~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~ 221 (479)
+++.+..| .+..||.++..-.+..+++. .-.|..+..++.|..++-++.+|.+..+=.
T Consensus 54 N~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp 132 (741)
T KOG4460|consen 54 NVVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELP 132 (741)
T ss_pred chhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEch
Confidence 44555555 77777776553333444421 124667777888988888888885544321
Q ss_pred CCCceEEEEecCCc-eeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcCC-----EEEEEeCCCcEEE
Q 011711 222 HTGQSASVINLGAE-VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-----MLFAGAQDGNILV 295 (479)
Q Consensus 222 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~g~~dg~i~i 295 (479)
..-..-..+..+.+ +.| +...+ +..+-.....-.+...+|+|+ .|..-+.|+.|++
T Consensus 133 ~rwG~~s~~eDgk~~v~C----------------Rt~~i--~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRi 194 (741)
T KOG4460|consen 133 KRWGKNSEFEDGKSTVNC----------------RTTPV--AERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRI 194 (741)
T ss_pred hhcCccceecCCCceEEE----------------Eeecc--cceeeccCCceeeeeccccCCccCCceEEEEecCcEEEE
Confidence 11111111111111 111 00111 111111112334555667665 6777788889999
Q ss_pred EEccCCC
Q 011711 296 WKGIPNT 302 (479)
Q Consensus 296 wd~~~~~ 302 (479)
||+....
T Consensus 195 y~lS~~t 201 (741)
T KOG4460|consen 195 YSLSEPT 201 (741)
T ss_pred EecCCcc
Confidence 9876543
No 452
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.77 E-value=60 Score=35.99 Aligned_cols=104 Identities=14% Similarity=0.197 Sum_probs=55.4
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCc-----eeEEEeCCCEEEEEcCCeEEEEEcCCCceEEe
Q 011711 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE-----VGSLICEGPWVFVGMPNVVKAWHIESSAEFSL 267 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~ 267 (479)
..-..++|+|...++|.++.+|.|+++-...-+.....+.... ..-.....+...-..+..+.+|.........
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~- 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF- 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence 4556789999999999999999999997654443332222211 0111112223333344455555544332221
Q ss_pred cCCCccEEEEEEcCC--EEEEEeCCCcEEEEEccCC
Q 011711 268 DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPN 301 (479)
Q Consensus 268 ~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~ 301 (479)
....+++....+- . +.| ..+.+++||..-.
T Consensus 115 --~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~ 146 (993)
T KOG1983|consen 115 --LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRH 146 (993)
T ss_pred --cCCcceeccCCCCcch-hcc-cCceeeEeeechh
Confidence 1122223222222 4 555 8888888886543
No 453
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=81.72 E-value=62 Score=32.67 Aligned_cols=264 Identities=14% Similarity=0.149 Sum_probs=134.3
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC--ceeEEEe-CCCEEEEEcCCeEEEEEcCCCceEE--
Q 011711 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA--EVGSLIC-EGPWVFVGMPNVVKAWHIESSAEFS-- 266 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~--~~~~~~~-~~~~l~~~~~~~i~v~~~~~~~~~~-- 266 (479)
..+|.++.+...|. +..|+.|| +..+|..+++.++...... .+..+.. -+.-+.+|.+.-+.+.+.++.....
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqGv~~~e~~G~~~sn~~ 241 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQGVYLQEAEGWRASNWG 241 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccceEEEchhhccccccC
Confidence 46788888877774 66777777 6778888888766554332 3333332 3445667777778888877744322
Q ss_pred ecCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECC
Q 011711 267 LDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLD 344 (479)
Q Consensus 267 ~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~ 344 (479)
..-+.+.|..+.-+.+ .+-.|+++|..+.---+.+-. .+......-.+.|.++..+ ...+.+++.+|.+++-+-.
T Consensus 242 ~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq---~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~ 318 (671)
T COG3292 242 PMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQ---IPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTAD 318 (671)
T ss_pred CCCcchheeeeecccCCCEEEeecccceeEecCCCCcc---ccccccCCccccccceeeccCCCEeeeccCceEEEecch
Confidence 2234555666655555 788888877554322222111 0111111112455666666 6678888888877654432
Q ss_pred CCcEEEEEeCCCCCcEE---EEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccC-ccceEEEeeeeCCCCCcEEEE
Q 011711 345 TLEAVMTLNGHTDAPMS---LLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE-DHGVLALGGLNDPDGNPVLIC 418 (479)
Q Consensus 345 ~~~~~~~~~~h~~~v~~---~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s 418 (479)
......+....+.+.. .+.. +..+--...-|.+.+-+-.++..+........ .++...+ +.+|. +-.
T Consensus 319 -w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~----d~~g~--lWl 391 (671)
T COG3292 319 -WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLE----DSRGR--LWL 391 (671)
T ss_pred -hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhh----ccCCc--EEE
Confidence 2222222222121111 1110 11111111112233333333333333222211 1111122 23454 444
Q ss_pred EeCCCeEEEeecCC-Cceeeeeec--cCceEEEEECCCceEEEEcCCCcEEE
Q 011711 419 SCNDDSVHLYELPS-FMERGRIFS--RREVRVIETGPDGLFFTGDGTGMLSV 467 (479)
Q Consensus 419 ~~~dg~v~iwd~~~-~~~~~~~~~--~~~v~~l~~s~~g~l~sg~~dg~v~v 467 (479)
++..+-+..|+.++ +........ .++|..+.-.|++.|..|+.+|.++.
T Consensus 392 gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIGTs~Glvk~ 443 (671)
T COG3292 392 GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGLVKR 443 (671)
T ss_pred EecccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEeccCCeEec
Confidence 55554566676666 222222222 67788888889888888888887643
No 454
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.20 E-value=75 Score=33.24 Aligned_cols=191 Identities=11% Similarity=0.070 Sum_probs=88.6
Q ss_pred ccEEEEEEcCCEEEEE-eCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEE
Q 011711 272 GEVYSMVVANEMLFAG-AQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAV 349 (479)
Q Consensus 272 ~~v~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~ 349 (479)
+...++..+|..+... +.--.|+||+.... ++..+.-...++..+.|+ ...|++...+|++++|++-.. .+
T Consensus 44 gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~------lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge-~i 116 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLYSARPYIRIFNISGQ------LLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGE-FI 116 (829)
T ss_pred CCceEEEecccccccccccceeEEEEecccc------chHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchh-hh
Confidence 3344555555422211 23345778876543 233333334478889998 778999999999999998532 22
Q ss_pred EE--E--eCCCCCcEEEEEcCCEEEEEeCCCeEEEE-EcCCCcceEEecc-ccCccceEEEeeeeCCCCC-cEEEEEe-C
Q 011711 350 MT--L--NGHTDAPMSLLCWDQYLLSCSLDNTIKVW-IMTEEGNLEVAYT-HNEDHGVLALGGLNDPDGN-PVLICSC-N 421 (479)
Q Consensus 350 ~~--~--~~h~~~v~~~~~~~~~l~s~s~dg~i~iw-d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~l~s~~-~ 421 (479)
.. . ......|....++.+=++.-..+|.+.+- +..... +..... ........++.+.. |... ..++-.. .
T Consensus 117 e~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~-~~~~~~~ll~v~~~ 194 (829)
T KOG2280|consen 117 ESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQ-PHRQSTILLDVDVA 194 (829)
T ss_pred cccccccccccCceeEEEEecCceEEEecCCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEec-CCCcceeEEeechh
Confidence 22 1 12223344444443333333344444433 332211 111111 11111112222211 2111 1111110 0
Q ss_pred CCeEEEeecCCC--ceeeeeeccCceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 422 DDSVHLYELPSF--MERGRIFSRREVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 422 dg~v~iwd~~~~--~~~~~~~~~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
.+ ..++..... +...-......+.-+.+||+. .|+-=..+|.|.+-+++.
T Consensus 195 v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 195 VG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred hh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecch
Confidence 00 112222111 111111124678889999988 888888888887766554
No 455
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=81.03 E-value=52 Score=31.87 Aligned_cols=150 Identities=18% Similarity=0.197 Sum_probs=76.2
Q ss_pred EEeecCCCceeeEEEecccccEEEEEeCCC-----CCEEEEEeCCCcEEEEECCCCceEEEEecCCceeE-----EEe-C
Q 011711 174 HSWFCGEGFTMLAKLEGHKKAVSGIALPLR-----SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS-----LIC-E 242 (479)
Q Consensus 174 ~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~-----~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~-----~~~-~ 242 (479)
..|...+. -+.|...|.+++.+-+ ++.+..-+.-+.|-+|+..+++....++....-.. +-+ +
T Consensus 206 l~W~~q~~------~~~~~~~v~s~~~s~~~~F~i~~~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~dsag~~~kL~w~n 279 (465)
T KOG2714|consen 206 LLWKIQEE------GSNTVKGVFSLAVSVDPLFFIGTQLVALSSVGKIGVWHAVTQQAQDVQPISSYDSAGSFLKLGWLN 279 (465)
T ss_pred eeEeeccC------CCcceEEEEeecccccchhhhhhhhhhccccccccccchhhhceeeeeeccCccccCChhhhcccc
Confidence 55655443 1234455666655443 33455556678899999988855444433221111 111 2
Q ss_pred CC--EEEE-------EcCCeEEEEEcCCCceEEecCCCccEEEEEEcCCEEEEEeCCCcEEEEEccCCCCC-cccceeee
Q 011711 243 GP--WVFV-------GMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQN-PFQLAALL 312 (479)
Q Consensus 243 ~~--~l~~-------~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~ 312 (479)
+. ++.+ ..++.|++||.+... +++.| ..++.|+..+.+++-+....... ...+..++
T Consensus 280 g~~~li~~~~fp~~~kdN~~i~~~d~Rd~n-----------~~~~W--~~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f 346 (465)
T KOG2714|consen 280 GSNLLIDSQKFPLRMKDNDLIVTEDFRDRN-----------TSGNW--IEIAYGTSSGEVRVIDQHPETVGVGPCLFQTF 346 (465)
T ss_pred CceeEEEEeeccccccCCceEEEeeccCCC-----------ccceE--EEecCCccccceEeeeccccccCCCCeEEEEE
Confidence 22 2222 245677888877654 11111 14566677777777764332211 12233444
Q ss_pred cCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCCCcEE
Q 011711 313 KGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAV 349 (479)
Q Consensus 313 ~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~ 349 (479)
..|..+.. ++=.+...+.++.|.+...+-+
T Consensus 347 ~~~~~~L~-------~idv~~~~~~~~~~~~tr~rGm 376 (465)
T KOG2714|consen 347 EVHGSPLG-------LIDVCSDGGHVRVWNSTRFRGM 376 (465)
T ss_pred EecCCCcc-------eeehhhhCCcceEEeecccccc
Confidence 45554421 3334455677889987655443
No 456
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.86 E-value=32 Score=38.16 Aligned_cols=134 Identities=16% Similarity=0.248 Sum_probs=79.9
Q ss_pred eCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc----C------CEEEEEeCCCeEEEEEcCCCcce---EEecc----c
Q 011711 333 SMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW----D------QYLLSCSLDNTIKVWIMTEEGNL---EVAYT----H 395 (479)
Q Consensus 333 s~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~----~------~~l~s~s~dg~i~iwd~~~~~~~---~~~~~----~ 395 (479)
+.|+.+.+|+..++.....+.+-+..|..+... | ++++..+.--.|.++-+.-.+.. ..+.. .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 458899999999988888887777777666554 1 34555555556666644322111 11111 1
Q ss_pred cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecC----CC---cee-----------------eee--eccCceEEEE
Q 011711 396 NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP----SF---MER-----------------GRI--FSRREVRVIE 449 (479)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~----~~---~~~-----------------~~~--~~~~~v~~l~ 449 (479)
..++...++ ....+|+ ++.+| .|| .+|.+. .+ +.. ..+ .+.++|..++
T Consensus 176 ~dg~~V~~I--~~t~nGR-IF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 176 VDGVSVNCI--TYTENGR-IFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred cCCceEEEE--EeccCCc-EEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 122222222 2356777 66654 666 455432 11 100 011 1256899999
Q ss_pred ECCCc-eEEEEcCCCcEEEEEecc
Q 011711 450 TGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 450 ~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
+.... .+.+-++.|+|.+|++..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 98877 899999999999999977
No 457
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=80.61 E-value=61 Score=31.83 Aligned_cols=82 Identities=2% Similarity=-0.188 Sum_probs=47.7
Q ss_pred cEEEEEc--CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCC--------------CCCcEEEEEeCC
Q 011711 359 PMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDP--------------DGNPVLICSCND 422 (479)
Q Consensus 359 v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~s~~~d 422 (479)
+.++..+ +++.++...=|.|.++|+.+...+...++..+..-...-...... ....+++-+-.-
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 3444443 567777777799999999988766665554332111111100000 011244445668
Q ss_pred CeEEEeecCCCceeeeee
Q 011711 423 DSVHLYELPSFMERGRIF 440 (479)
Q Consensus 423 g~v~iwd~~~~~~~~~~~ 440 (479)
|.|.||+++++..+..+.
T Consensus 390 g~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 390 GILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CeEEEEecCCCCEEEEEE
Confidence 899999998887766554
No 458
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.51 E-value=56 Score=35.26 Aligned_cols=71 Identities=13% Similarity=0.011 Sum_probs=46.8
Q ss_pred EEEeccCCeeEeCCCCCeEEEeecCCCcee--eEE------Ee--cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 011711 155 VCYHWLSGNCVKGDECRFWHSWFCGEGFTM--LAK------LE--GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG 224 (479)
Q Consensus 155 ~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~--~~~------~~--~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~ 224 (479)
.|..-.++.+..|..+|.+..|.+.+.... ... +. -++.+|..+...+.-.+++.-+ |+.|.++++.+-
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~-dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILS-DSQIAVHKLPEL 98 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheec-CCcceeeecCcc
Confidence 477788889999999999999999754111 000 11 1356777777666555555443 567888887765
Q ss_pred ce
Q 011711 225 QS 226 (479)
Q Consensus 225 ~~ 226 (479)
+.
T Consensus 99 ~~ 100 (877)
T KOG2063|consen 99 EP 100 (877)
T ss_pred cc
Confidence 55
No 459
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.28 E-value=45 Score=30.78 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=40.2
Q ss_pred CCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEe------CCCcEEEEECCCCce
Q 011711 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS------RDGTVQLWDCHTGQS 226 (479)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s------~Dg~v~vwd~~~~~~ 226 (479)
.+.-|.+||..+. +-...-.+=.+.|++|.|..+.++++.|. ....+..||..+...
T Consensus 14 ~C~~lC~yd~~~~-qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 14 PCPGLCLYDTDNS-QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CCCEEEEEECCCC-EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 5778999998765 33333334567899999987777777764 355788898877654
No 460
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.98 E-value=33 Score=35.62 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=44.6
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCC-CEEEEEcCCeEEEEEcCC
Q 011711 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG-PWVFVGMPNVVKAWHIES 261 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~i~v~~~~~ 261 (479)
...++++.-+|.++.++.++.||+|++++..............+...+.+.+ .++++.+|..+..|.-+.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWKEDG 84 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheeeccC
Confidence 3557778888999999999999999999987665543333333333333322 233444555555555443
No 461
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=79.43 E-value=6.5 Score=23.49 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=21.2
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEEeC
Q 011711 328 RLYSGSMDNTIRVWDLDTLEAVMTLNG 354 (479)
Q Consensus 328 ~l~sgs~dg~I~iwd~~~~~~~~~~~~ 354 (479)
.++.++.||.|.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456668888888888888888887764
No 462
>PRK13684 Ycf48-like protein; Provisional
Probab=79.34 E-value=59 Score=30.95 Aligned_cols=174 Identities=9% Similarity=0.042 Sum_probs=0.0
Q ss_pred eEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECC-CCceEEEEecCCceeEEEe-
Q 011711 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH-TGQSASVINLGAEVGSLIC- 241 (479)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~- 241 (479)
.+.+......+-=|-...++.+..-. ...+.++.+.+++.+++++..-...+.+|-. ..-..........+..+..
T Consensus 146 ~~~g~~G~i~~S~DgG~tW~~~~~~~--~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~ 223 (334)
T PRK13684 146 EMATNVGAIYRTTDGGKNWEALVEDA--AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQ 223 (334)
T ss_pred eeeeccceEEEECCCCCCceeCcCCC--cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEc
Q ss_pred -CCCEEEEEcCCeEEEEEcCCCceEEecCCC-----ccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecC
Q 011711 242 -EGPWVFVGMPNVVKAWHIESSAEFSLDGPV-----GEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (479)
Q Consensus 242 -~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~-----~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 314 (479)
+++.++++..+.+.+-..+.+...+..... ..+.++.+.++ .+++++.+|.+. .....+.. ++.......
T Consensus 224 ~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~t--W~~~~~~~~ 300 (334)
T PRK13684 224 PDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKT--WEKDPVGEE 300 (334)
T ss_pred CCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCC--CeECCcCCC
Q ss_pred CCCCeEEEEEc-CCEEEEEeCCCeEEEEE
Q 011711 315 HTRPVTCLAVG-GKRLYSGSMDNTIRVWD 342 (479)
Q Consensus 315 h~~~i~~l~~~-~~~l~sgs~dg~I~iwd 342 (479)
-....+.+.+. ++..+..+..|.|.-++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 301 VPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred CCcceEEEEEeCCCceEEECCCceEEEec
No 463
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.32 E-value=0.21 Score=48.11 Aligned_cols=133 Identities=13% Similarity=0.118 Sum_probs=87.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc---CCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceE
Q 011711 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVL 402 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 402 (479)
+.-++.++.+-.+..||-. ++...... .+.....+.++ +..++.+-..+.+.+||+.+....+...+......-
T Consensus 46 ~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl- 122 (615)
T KOG2247|consen 46 GHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL- 122 (615)
T ss_pred CCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH-
Confidence 4447778888888888843 34333333 23334555665 345666777899999999875433322222222111
Q ss_pred EEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee-ccCceEEEEECCCceEEEEcCCCcE
Q 011711 403 ALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF-SRREVRVIETGPDGLFFTGDGTGML 465 (479)
Q Consensus 403 ~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~l~~s~~g~l~sg~~dg~v 465 (479)
..|++... .++.+...+.+.|++..+.+...... |...++++++.+.++.+.++.|..+
T Consensus 123 ---l~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L 182 (615)
T KOG2247|consen 123 ---LAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTL 182 (615)
T ss_pred ---HhhccCCc-cccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHH
Confidence 33455555 67778889999999998877776666 7788999999999977777776543
No 464
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=79.22 E-value=0.45 Score=49.34 Aligned_cols=57 Identities=23% Similarity=0.159 Sum_probs=34.2
Q ss_pred CeeEeCCCCCeEEEeecCCCceeeEEEecccccEEEEEeCCCCC-EEEEEeCCCcEEEEE
Q 011711 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWD 220 (479)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~~V~~l~~s~~~~-~l~s~s~Dg~v~vwd 220 (479)
..+-.+.+++.|++-+..... ...+.+|...+++++|-..|- .|+.-|-||++..|-
T Consensus 196 ~~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a 253 (1283)
T KOG1916|consen 196 VYICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWA 253 (1283)
T ss_pred ceeeeccCCCceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEe
Confidence 455567788888887776552 255667998888888743332 233334444444443
No 465
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.72 E-value=65 Score=31.10 Aligned_cols=193 Identities=15% Similarity=0.201 Sum_probs=100.1
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCCCccEEEEEEcC
Q 011711 202 LRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN 281 (479)
Q Consensus 202 ~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~~~v~~~~~~~ 281 (479)
|...+++...+++-+.+||++ |+.+..+..+... .+ .-.+.+....
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~N-NV--------------------------------Dvrygf~l~g 111 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPN-NV--------------------------------DVRYGFPLNG 111 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EE-EE--------------------------------EEEEEEEETT
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcc-ee--------------------------------eeecceecCC
Confidence 456677777888888899876 5555544322110 00 0112222333
Q ss_pred C--EEEEEe-CC---CcEEEEEccCCCCCccccee----eecCCCCCeEEEEE--c---CC-EEEEEeCCCeEEEEECC-
Q 011711 282 E--MLFAGA-QD---GNILVWKGIPNTQNPFQLAA----LLKGHTRPVTCLAV--G---GK-RLYSGSMDNTIRVWDLD- 344 (479)
Q Consensus 282 ~--~l~~g~-~d---g~i~iwd~~~~~~~~~~~~~----~~~~h~~~i~~l~~--~---~~-~l~sgs~dg~I~iwd~~- 344 (479)
. -|++++ .+ ..|++|.+...... ++.+. .+......+..+++ + +. ++++...+|.+..|-+.
T Consensus 112 ~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~ 190 (381)
T PF02333_consen 112 KTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTD 190 (381)
T ss_dssp EEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE
T ss_pred ceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEe
Confidence 3 233333 32 46888877642210 11110 01112234666776 2 33 67778889998888764
Q ss_pred --CC----cEEEEEeCCCCCcEEEEEc--CCEEEEEeCCCeEEEEEcCCCc--ceEEe---cc--ccCccceEEEeeeeC
Q 011711 345 --TL----EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG--NLEVA---YT--HNEDHGVLALGGLND 409 (479)
Q Consensus 345 --~~----~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~---~~--~~~~~~~~~~~~~~~ 409 (479)
.+ +.+++|...+ .+..+..+ ...|+.+-++--|.-|+.+... ....+ .. ....+..+.+ ...
T Consensus 191 ~~~g~v~~~lVR~f~~~s-Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlal--y~~ 267 (381)
T PF02333_consen 191 DGDGKVSATLVREFKVGS-QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLAL--YYG 267 (381)
T ss_dssp -TTSSEEEEEEEEEE-SS--EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEE--EE-
T ss_pred CCCCcEeeEEEEEecCCC-cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEE--Eec
Confidence 23 4577777543 57777777 4689999999888888876332 11112 11 2223334444 333
Q ss_pred CCCC-cEEEEEeCCCeEEEeecCC
Q 011711 410 PDGN-PVLICSCNDDSVHLYELPS 432 (479)
Q Consensus 410 ~~~~-~~l~s~~~dg~v~iwd~~~ 432 (479)
.+++ ++|++.-.+++..+|+...
T Consensus 268 ~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 268 SDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp CCC-EEEEEEEGGGTEEEEEESST
T ss_pred CCCCeEEEEEcCCCCeEEEEecCC
Confidence 5554 4666666678999999875
No 466
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=77.83 E-value=3.9 Score=42.89 Aligned_cols=94 Identities=11% Similarity=0.067 Sum_probs=52.6
Q ss_pred CCcEEEEEccC--CCCCcccceeeecCCCCCeEEEEE-----cCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCc---
Q 011711 290 DGNILVWKGIP--NTQNPFQLAALLKGHTRPVTCLAV-----GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAP--- 359 (479)
Q Consensus 290 dg~i~iwd~~~--~~~~~~~~~~~~~~h~~~i~~l~~-----~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v--- 359 (479)
-|.+.+||+.. +...+.-.+.........+.-+.| +.-++..+-.+++|++.+..+... ..+.+|...+
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 46677888654 221111112222223333444444 255666777888998877765332 2334465544
Q ss_pred ----------EEEEEcCCEEEEEeCCCeEEEEEcC
Q 011711 360 ----------MSLLCWDQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 360 ----------~~~~~~~~~l~s~s~dg~i~iwd~~ 384 (479)
..++.+|..++..+.||.+++|.+.
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 3455567888888888888877653
No 467
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=77.57 E-value=22 Score=37.40 Aligned_cols=182 Identities=14% Similarity=0.059 Sum_probs=98.7
Q ss_pred EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCCCeEEEEECCC-----CcEEEEEeCCCC
Q 011711 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDT-----LEAVMTLNGHTD 357 (479)
Q Consensus 283 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~dg~I~iwd~~~-----~~~~~~~~~h~~ 357 (479)
.+.+|++++.+.++.-...... .............+.++.+....+..|.-||++-.+--.- +++...+.....
T Consensus 549 Tic~gtq~ssisissss~~s~k-e~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~l 627 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIK-EVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSL 627 (925)
T ss_pred cccccCccceeEEeeccCCccc-ceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCCCCCccccccCCc
Confidence 7888999999999986633221 1112222334556777777655566666666665542211 112223333344
Q ss_pred CcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCceee
Q 011711 358 APMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMERG 437 (479)
Q Consensus 358 ~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 437 (479)
++.+.++.++++ -++.+|.|.++...+.........|......+..... .+.. +.++-.....++.++..+.....
T Consensus 628 Pvrsla~~ed~~-was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~--~~~g-VwvafasG~~~rlfhtetl~hlq 703 (925)
T KOG3522|consen 628 PVRSLAFQEDFV-WASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLY--LDNG-VWVAFASGDEERLFHTETLWHLQ 703 (925)
T ss_pred cccchhhhhcee-eeecCCceEEEechhccccchhHHHHhhcceEEEEEe--eCCc-eEEEEcCCCEEEEecccccCCcc
Confidence 566666666654 4566899999998887666666655554433333221 3333 44444344456666666654443
Q ss_pred eeec------------cCceEEEEECCCceEEEEcCCCcEEEEEe
Q 011711 438 RIFS------------RREVRVIETGPDGLFFTGDGTGMLSVWKI 470 (479)
Q Consensus 438 ~~~~------------~~~v~~l~~s~~g~l~sg~~dg~v~vw~~ 470 (479)
.+.. --.+....|+ .|+|+.++.++....--+
T Consensus 704 d~niaT~vt~~lP~~kllsv~~rl~c-~gl~~V~~~~~l~v~~~v 747 (925)
T KOG3522|consen 704 DSNIATSVTVDLPFGKLLSVPGRLWC-QGLLMVLTSLTLLVALPV 747 (925)
T ss_pred ccccCcceeecCCCcccccCCCcccc-cceeEEeccceeEEEeee
Confidence 3321 1113333444 447777777775544333
No 468
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=76.58 E-value=15 Score=35.55 Aligned_cols=176 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred ecCCCceeeEEEecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCCeEEE
Q 011711 177 FCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKA 256 (479)
Q Consensus 177 ~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v 256 (479)
+..+..+.+..+..-.+.|..+-..|||+.|+.-+. .++.|+++.+....
T Consensus 205 ~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~----------------------------- 254 (733)
T COG4590 205 DRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQ----------------------------- 254 (733)
T ss_pred ccCchhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccc-----------------------------
Q ss_pred EEcCCCceEEecCCCccEEEEE-----EcCC-EEEEEeCCCcEEEE-EccCCCCCcccceeeecCCCCCeEEEEEc--CC
Q 011711 257 WHIESSAEFSLDGPVGEVYSMV-----VANE-MLFAGAQDGNILVW-KGIPNTQNPFQLAALLKGHTRPVTCLAVG--GK 327 (479)
Q Consensus 257 ~~~~~~~~~~~~~~~~~v~~~~-----~~~~-~l~~g~~dg~i~iw-d~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~ 327 (479)
.+++....+...+..+. ..+. .+++++.||-|.-| |.+......+..+..++-...++..+... .+
T Consensus 255 -----~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rk 329 (733)
T COG4590 255 -----IRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRK 329 (733)
T ss_pred -----hhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccc
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEEeCCCCC-cEEEEEcCCEEEEEeCCCeEEEEEcCCCcc
Q 011711 328 RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA-PMSLLCWDQYLLSCSLDNTIKVWIMTEEGN 388 (479)
Q Consensus 328 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 388 (479)
-+++-+.+|++..+.....+.+..-..-... ...++.+++++++-. .|.|+++.+++..+
T Consensus 330 gF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 330 GFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred eEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec-CCceEEEEecCCCC
No 469
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.76 E-value=59 Score=35.69 Aligned_cols=98 Identities=11% Similarity=-0.016 Sum_probs=59.2
Q ss_pred EeCCCcEEEEEccCCCCCcccceeeecCC------CCCeEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCC
Q 011711 287 GAQDGNILVWKGIPNTQNPFQLAALLKGH------TRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357 (479)
Q Consensus 287 g~~dg~i~iwd~~~~~~~~~~~~~~~~~h------~~~i~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 357 (479)
...+-.|..||+.+-....++....+..| .....++.|+ ....++...|+.|++..+.......+--.-..
T Consensus 120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~ 199 (1405)
T KOG3630|consen 120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTN 199 (1405)
T ss_pred ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCccc
Confidence 34444688999876433221112222222 2234466666 44567778899999887654322211112334
Q ss_pred CcEEEEEc--CCEEEEEeCCCeEEEEEcC
Q 011711 358 APMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (479)
Q Consensus 358 ~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (479)
..++++|. |+.++.|-..|++.-|...
T Consensus 200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred ceeeEEeccccceeeEecCCCeEEEeecc
Confidence 56788887 8899999999999998654
No 470
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=75.59 E-value=1.6 Score=21.68 Aligned_cols=17 Identities=29% Similarity=0.880 Sum_probs=13.1
Q ss_pred eeeeecCccCCC-CCCcccc
Q 011711 61 CVYFLEGRCNRN-PCRFAHT 79 (479)
Q Consensus 61 ~~~~~~~~~~~~-p~~~l~~ 79 (479)
|+||.. |... -|+|.|+
T Consensus 2 Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 2 CKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CcCcCC--CCCCCcCccCCc
Confidence 677765 7776 8999884
No 471
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.41 E-value=1e+02 Score=34.36 Aligned_cols=220 Identities=13% Similarity=0.045 Sum_probs=104.9
Q ss_pred ecCCCeEEEeccCCeeEeCCCCCeEEEeecCCCceeeEEEecccc----cEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 011711 149 RTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKK----AVSGIALPLRSDKLYSGSRDGTVQLWDCHTG 224 (479)
Q Consensus 149 ~~~~~~~c~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~H~~----~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~ 224 (479)
.+.+...++.+....++-|..+|.|++|-.. .+.....|.. .+..+.+-...........+..+.+|.....
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~----~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~ 110 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQP----GVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIK 110 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEeccc----ceEEEeccccccchhhhheeeeecccccceeecccceeeeccccc
Confidence 3455789999999999999999999999863 2333333332 2222222222223334444556666665432
Q ss_pred ceEEEEecCCceeEEEeCCCEE-EEEcCCeEEEEEcCCCceEEec-----CCCccEEEEEEcCC---EEEEEeCCCcEEE
Q 011711 225 QSASVINLGAEVGSLICEGPWV-FVGMPNVVKAWHIESSAEFSLD-----GPVGEVYSMVVANE---MLFAGAQDGNILV 295 (479)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~i~v~~~~~~~~~~~~-----~~~~~v~~~~~~~~---~l~~g~~dg~i~i 295 (479)
..+ .......++..++... ..+..+.+++|+..-.....+. .+...+. ...... .......+ -.+
T Consensus 111 ~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~--~~~ 184 (993)
T KOG1983|consen 111 TGV---FLKQEITSFVTDPPPDWLIGENGLVKVSDVLRHQLSDLKYAGTESSNFVPY-ESLSPTLSIEGLVIDLD--TVL 184 (993)
T ss_pred cee---ecCCcceeccCCCCcchhcccCceeeEeeechhhhccceecccccccccee-eeeccceeeeccccccc--cce
Confidence 211 1122222222222211 2225566666665433321111 0000000 000000 00000000 001
Q ss_pred EEccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCEEEEEeC
Q 011711 296 WKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSL 374 (479)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~ 374 (479)
+.+.. ....+..+..++.+..+. ..-.+.+...+.+-+|+.........+....... ..++..++++..
T Consensus 185 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~h~ 254 (993)
T KOG1983|consen 185 ISLPD-------AYLGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE---SRDGSHFVSYHT 254 (993)
T ss_pred eeccc-------ccccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC---ccCCceEEEEEe
Confidence 11100 012233455566666553 4445555666777777765444333333222222 555889999999
Q ss_pred CCeEEEEEcCCCcc
Q 011711 375 DNTIKVWIMTEEGN 388 (479)
Q Consensus 375 dg~i~iwd~~~~~~ 388 (479)
||.+.+||...+..
T Consensus 255 Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 255 DGSYAFWDVSSGKL 268 (993)
T ss_pred cCCEEeeecCCCce
Confidence 99999999987643
No 472
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.22 E-value=1.2e+02 Score=32.33 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=52.4
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEECCCC-ceEEEEecC-CceeEEEeCCCEEEEEcCCeEEEEEcCCCceEEecCC
Q 011711 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-QSASVINLG-AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGP 270 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~ 270 (479)
-.|..|.++|+|.+|+-.|..| |.|-.+... .....+..+ ..+.| +.+.+.. .+-...+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~C----------------rt~~v~~--~~~~~~~ 145 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINC----------------RTVPVDE--RFFTSNS 145 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeE----------------EEEEech--hhccCCC
Confidence 4688888999999999888855 555444321 111111111 11111 1111110 1112234
Q ss_pred CccEEEEEEcCC-----EEEEEeCCCcEEEEEccCC
Q 011711 271 VGEVYSMVVANE-----MLFAGAQDGNILVWKGIPN 301 (479)
Q Consensus 271 ~~~v~~~~~~~~-----~l~~g~~dg~i~iwd~~~~ 301 (479)
...|..+.|+|. .|++=+.|+++++||+...
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 567888899865 8999999999999999644
No 473
>PLN02193 nitrile-specifier protein
Probab=75.22 E-value=96 Score=31.20 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=52.2
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceEEEEecC-----CceeE-EEeCCCEEEEE-cC-----CeEEEEEcCCCceE
Q 011711 203 RSDKLYSGSRD-----GTVQLWDCHTGQSASVINLG-----AEVGS-LICEGPWVFVG-MP-----NVVKAWHIESSAEF 265 (479)
Q Consensus 203 ~~~~l~s~s~D-----g~v~vwd~~~~~~~~~~~~~-----~~~~~-~~~~~~~l~~~-~~-----~~i~v~~~~~~~~~ 265 (479)
++.+.+.|+.+ ..+..+|+.+.+-....... ....+ ...++.+.+.| .+ ..+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 45566666654 35788898877654432221 11112 22345544444 22 35778888776543
Q ss_pred EecC------CCccEEEEEEcCCEEEEEeCC----CcEEEEEccCCC
Q 011711 266 SLDG------PVGEVYSMVVANEMLFAGAQD----GNILVWKGIPNT 302 (479)
Q Consensus 266 ~~~~------~~~~v~~~~~~~~~l~~g~~d----g~i~iwd~~~~~ 302 (479)
.... .........+.+.+++.|+.+ ..+.+||+.+..
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCE
Confidence 2221 111222233444566666655 458889987754
No 474
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=74.50 E-value=66 Score=31.77 Aligned_cols=29 Identities=21% Similarity=0.526 Sum_probs=23.8
Q ss_pred ceEEEEECCCc-eEEEEcCCCcEEEEEecc
Q 011711 444 EVRVIETGPDG-LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 444 ~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~ 472 (479)
.|..+...+.. .+++-..+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 38889998877 999999999999999976
No 475
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=73.60 E-value=69 Score=28.79 Aligned_cols=148 Identities=14% Similarity=0.206 Sum_probs=80.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEc----CC--EEEEEeC--CCeEEEEEcCCCcceE-Eecccc
Q 011711 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW----DQ--YLLSCSL--DNTIKVWIMTEEGNLE-VAYTHN 396 (479)
Q Consensus 326 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~----~~--~l~s~s~--dg~i~iwd~~~~~~~~-~~~~~~ 396 (479)
...+++....+-+++||+. ++.++.+....-.-..+... |+ -|+.+|. ...|.+|.+....... .+...+
T Consensus 67 kS~vItt~Kk~Gl~VYDLs-GkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~~L~sitD~n 145 (364)
T COG4247 67 KSLVITTVKKAGLRVYDLS-GKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQYLESITDSN 145 (364)
T ss_pred cceEEEeeccCCeEEEecC-CCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCccceeeccCCC
Confidence 4567777788889999986 45566654332222222222 32 2333332 4578888776544322 222211
Q ss_pred C-----ccceEEEeeeeCCC-CCcEEEEEeCCCeEEEeecCC---C----ceeeeeeccCceEEEEECC-CceEEEEcCC
Q 011711 397 E-----DHGVLALGGLNDPD-GNPVLICSCNDDSVHLYELPS---F----MERGRIFSRREVRVIETGP-DGLFFTGDGT 462 (479)
Q Consensus 397 ~-----~~~~~~~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~---~----~~~~~~~~~~~v~~l~~s~-~g~l~sg~~d 462 (479)
. ......+++..+|. |..++.+...+|.|.-|.+-. + +.+..+.-......|.... .|.|..+-+|
T Consensus 146 ~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeEd 225 (364)
T COG4247 146 APYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEED 225 (364)
T ss_pred CccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeecc
Confidence 1 12234455556665 666777777889998887643 2 2333333333333333332 3366666555
Q ss_pred CcEEEEEeccCCCC
Q 011711 463 GMLSVWKILAKPNA 476 (479)
Q Consensus 463 g~v~vw~~~~~~~~ 476 (479)
+.||++..+++.
T Consensus 226 --vaiWK~~Aep~~ 237 (364)
T COG4247 226 --VAIWKYEAEPNR 237 (364)
T ss_pred --ceeeecccCCCC
Confidence 778998776553
No 476
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=73.54 E-value=10 Score=20.79 Aligned_cols=24 Identities=8% Similarity=0.318 Sum_probs=21.1
Q ss_pred cEEEEEEcCCEEEEEeCCCcEEEE
Q 011711 273 EVYSMVVANEMLFAGAQDGNILVW 296 (479)
Q Consensus 273 ~v~~~~~~~~~l~~g~~dg~i~iw 296 (479)
.|.+++..++.++++...+.+++|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 578888889999999999999987
No 477
>PRK10115 protease 2; Provisional
Probab=72.68 E-value=1.4e+02 Score=31.84 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=22.2
Q ss_pred ccEEEEEeCCCCCEEEEEeCC-----CcEEEEECCCCc
Q 011711 193 KAVSGIALPLRSDKLYSGSRD-----GTVQLWDCHTGQ 225 (479)
Q Consensus 193 ~~V~~l~~s~~~~~l~s~s~D-----g~v~vwd~~~~~ 225 (479)
-.+..+.++||+++|+-+... -.|++-|+.+|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~ 164 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN 164 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC
Confidence 446778889999987765332 246677776664
No 478
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=72.49 E-value=35 Score=33.67 Aligned_cols=29 Identities=34% Similarity=0.621 Sum_probs=22.4
Q ss_pred CCeEEEEEc--CCEEEEEeCCCeEEEEECCC
Q 011711 317 RPVTCLAVG--GKRLYSGSMDNTIRVWDLDT 345 (479)
Q Consensus 317 ~~i~~l~~~--~~~l~sgs~dg~I~iwd~~~ 345 (479)
..|..+..+ .+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 348888886 77999999999999999975
No 479
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=71.50 E-value=11 Score=21.34 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=20.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEE
Q 011711 205 DKLYSGSRDGTVQLWDCHTGQSASV 229 (479)
Q Consensus 205 ~~l~s~s~Dg~v~vwd~~~~~~~~~ 229 (479)
..++.++.+|.+...|.++|+.+..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3678888899999999998887654
No 480
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=71.33 E-value=1e+02 Score=29.85 Aligned_cols=40 Identities=10% Similarity=-0.010 Sum_probs=20.8
Q ss_pred EEEEEccCCCCCcccceeeecCCCCCeEEEEEcCCEEEEEeCC
Q 011711 293 ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD 335 (479)
Q Consensus 293 i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~l~sgs~d 335 (479)
+.+||..++. ++....+..-.....++.+++..++.|+..
T Consensus 314 ~e~yd~~~~~---W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGK---WQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCc---ccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 4578877654 322222222122233555667778887754
No 481
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=70.80 E-value=17 Score=21.65 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=24.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEecCCc
Q 011711 206 KLYSGSRDGTVQLWDCHTGQSASVINLGAE 235 (479)
Q Consensus 206 ~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~ 235 (479)
.++.++.||.|.-.|.++|+.+..++....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence 456668999999999999999888775543
No 482
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=70.30 E-value=33 Score=29.03 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.2
Q ss_pred ceEEEEECCCc-------eEEEEcCCCcEEEEEecc
Q 011711 444 EVRVIETGPDG-------LFFTGDGTGMLSVWKILA 472 (479)
Q Consensus 444 ~v~~l~~s~~g-------~l~sg~~dg~v~vw~~~~ 472 (479)
.+..++|||-| +|++...+|.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 79999999944 799999999999998654
No 483
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=69.61 E-value=78 Score=27.74 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=44.0
Q ss_pred CCeEEEeccCCeeEeCCCCCeEEEeecC-CCceeeEEEecccccEEEEEeCCCCCEEEEEeCC---C---cEEEE
Q 011711 152 PKNVCYHWLSGNCVKGDECRFWHSWFCG-EGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---G---TVQLW 219 (479)
Q Consensus 152 ~~~~c~~~~~~~~~~g~~d~~i~vw~~~-~~~~~~~~~~~H~~~V~~l~~s~~~~~l~s~s~D---g---~v~vw 219 (479)
+..+|....+-.+++ .....|.+|++. +.-+++..|.- -+.|..+.++..|++|+|-=.+ . .+|+|
T Consensus 20 P~~~c~~g~d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 20 PTAVCCGGPDALFVA-ASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred cceeeccCCceEEEE-cCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 345555432333343 444679999998 44466677754 4889999999999999996332 2 56765
No 484
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=68.67 E-value=79 Score=29.56 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=56.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEecCCceeEEEeCCCEEEEEcCC---------------------eEEEEEcCC
Q 011711 203 RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPN---------------------VVKAWHIES 261 (479)
Q Consensus 203 ~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------~i~v~~~~~ 261 (479)
+|++-++-+..|.|..+|.++|+.......+.....+.+.|.++++|... .+.+.|+.+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~t 291 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNS 291 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCC
Confidence 57778888888999999999898877777777777777778888876321 355666666
Q ss_pred CceE---EecCCCccEEEEEEcCC
Q 011711 262 SAEF---SLDGPVGEVYSMVVANE 282 (479)
Q Consensus 262 ~~~~---~~~~~~~~v~~~~~~~~ 282 (479)
+... .+.+...+++++++-|+
T Consensus 292 G~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 292 GDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred CCEEEEEEeCCceeEEEEEEEecC
Confidence 6643 34455555555555554
No 485
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=68.33 E-value=1.4e+02 Score=30.27 Aligned_cols=243 Identities=13% Similarity=0.116 Sum_probs=111.6
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCce---EEEEec-CCceeEEEe-CCC--EEEEE---cCCeEEEEEcCCCceEEecCC
Q 011711 201 PLRSDKLYSGSRDGTVQLWDCHTGQS---ASVINL-GAEVGSLIC-EGP--WVFVG---MPNVVKAWHIESSAEFSLDGP 270 (479)
Q Consensus 201 s~~~~~l~s~s~Dg~v~vwd~~~~~~---~~~~~~-~~~~~~~~~-~~~--~l~~~---~~~~i~v~~~~~~~~~~~~~~ 270 (479)
..++..++-+..+|.+..-.+..... +..+.. .....++.. ++. +++++ +|+.+..+....-+.......
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 55677899999999998887765441 222222 222333333 333 55554 444555555443344444556
Q ss_pred CccEEEEEEcCC------------EEEEEe---CCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc---CCEEEEE
Q 011711 271 VGEVYSMVVANE------------MLFAGA---QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSG 332 (479)
Q Consensus 271 ~~~v~~~~~~~~------------~l~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~~~l~sg 332 (479)
-++|..+++.+. .|++++ .+|.+++..-.-+..........+.+ -..+..+... +.+++.+
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEE
Confidence 778888887421 455554 56788877532111000000111111 2233344432 4566666
Q ss_pred eCCCeEEEEECC---CCcEEEEEe--CCCC---CcEEEEEcCCEEEEEeCCCeEEEEEcCCCcceEEeccccCccceEEE
Q 011711 333 SMDNTIRVWDLD---TLEAVMTLN--GHTD---APMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLAL 404 (479)
Q Consensus 333 s~dg~I~iwd~~---~~~~~~~~~--~h~~---~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 404 (479)
..+.+ +++.+. ..+.+..+. +-.. .+.+-...++.++=.... .|++.+....+........... .....
T Consensus 378 ~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~-~I~~a 454 (504)
T PF10433_consen 378 FPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGS-IIVAA 454 (504)
T ss_dssp ESSEE-EEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESS-EEEEEESSSTSEEEEEE-TTS----SEE
T ss_pred cCCce-EEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecC-eEEEEECCCCeEEEEEeCCCCC-eEEEE
Confidence 65544 345443 344443332 1111 122222225666655554 4888887665544443332221 11122
Q ss_pred eeeeCCCCCcEEEEEeCCCeEEEeecCCCceeeeee------ccCceEEEEECC
Q 011711 405 GGLNDPDGNPVLICSCNDDSVHLYELPSFMERGRIF------SRREVRVIETGP 452 (479)
Q Consensus 405 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------~~~~v~~l~~s~ 452 (479)
+ -++. .++.+..++.+..+.+.......... ...+|.|+...|
T Consensus 455 ~----~~~~-~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 455 S----INDP-QVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp E----ESSS-EEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred E----ECCC-EEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 1 2233 44455568889999887765543322 367788888776
No 486
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=68.31 E-value=1e+02 Score=28.76 Aligned_cols=263 Identities=12% Similarity=0.085 Sum_probs=109.9
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEECCCC-ce--EEEEecCC----ceeEEEeC-CCEEEEEcCCeEEEEEcCCCc
Q 011711 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-QS--ASVINLGA----EVGSLICE-GPWVFVGMPNVVKAWHIESSA 263 (479)
Q Consensus 192 ~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~-~~--~~~~~~~~----~~~~~~~~-~~~l~~~~~~~i~v~~~~~~~ 263 (479)
...+.+|.|..+..-++.|. .+.| +....| +. ........ ....+.+. +...+++..+ +.+...+.++
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g-~ll~T~DgG~ 91 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG-LLLHTTDGGK 91 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT-EEEEESSTTS
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc-eEEEecCCCC
Confidence 45889999985555555554 4543 333322 21 11111111 23344443 3344455544 4444444444
Q ss_pred eEEe---c-CCCccEEEEE-EcCCEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeCCC
Q 011711 264 EFSL---D-GPVGEVYSMV-VANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN 336 (479)
Q Consensus 264 ~~~~---~-~~~~~v~~~~-~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~dg 336 (479)
.... . .-.+....+. ..++....++..|.|+ ....+-.. ++.+ ...-...+..+... +.++++++...
T Consensus 92 tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy--~T~DgG~t-W~~~--~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 92 TWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIY--RTTDGGKT-WQAV--VSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp S-EE----TT-SS-EEEEEEEETTEEEEEETT--EE--EESSTTSS-EEEE--E-S----EEEEEE-TTS-EEEEETTSS
T ss_pred CcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEE--EeCCCCCC-eeEc--ccCCcceeEeEEECCCCcEEEEECccc
Confidence 3321 1 1122333333 3444555555666554 32222211 3222 23344667776664 67777776555
Q ss_pred eEEEEECCCCcEEEEEeCCCCCcEEEEEc-CCEEEEEeCCCeEEEEEcCCCcceEEeccccCc---cceEEEeeeeCCCC
Q 011711 337 TIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNED---HGVLALGGLNDPDG 412 (479)
Q Consensus 337 ~I~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 412 (479)
...-||.-...-...-..-...+.++.+. +..|......|.|++=+.... .........+ ...-.+.+.+.+++
T Consensus 167 ~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~--~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 167 FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDD--GETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTE--EEEE---B-TTSS--S-EEEEEESSSS
T ss_pred EEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCC--ccccccccCCcccCceeeEEEEecCCC
Confidence 55677754322222222345668888887 445555668888888772211 1222221111 11113344455666
Q ss_pred CcEEEEEeCCCeEEEeecCCCceeeeeec----cCceEEEEECCCceEEEEcCCCcEEEE
Q 011711 413 NPVLICSCNDDSVHLYELPSFMERGRIFS----RREVRVIETGPDGLFFTGDGTGMLSVW 468 (479)
Q Consensus 413 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~v~~l~~s~~g~l~sg~~dg~v~vw 468 (479)
+ +.++|+ .|.+. ...+.++.=.+... ...+..+.|.++..-++-+.+|.|--|
T Consensus 245 ~-~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 245 E-IWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp --EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred C-EEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 5 666554 45333 33444433322221 456888888766666666678887655
No 487
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=68.19 E-value=14 Score=22.16 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=18.8
Q ss_pred EEEEcCCEEEEEeCCCeEEEEECCC
Q 011711 321 CLAVGGKRLYSGSMDNTIRVWDLDT 345 (479)
Q Consensus 321 ~l~~~~~~l~sgs~dg~I~iwd~~~ 345 (479)
++...+..++.++.||.++.+|.++
T Consensus 16 ~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTSEEEEEETT-
T ss_pred CCEEECCEEEEEcCCCEEEEEeCCC
Confidence 3466788999999999999999864
No 488
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=67.07 E-value=46 Score=30.07 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCCCeEEEEE--------c-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCCCcEEEEEcCCE------EEEEeCCCeEE
Q 011711 315 HTRPVTCLAV--------G-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQY------LLSCSLDNTIK 379 (479)
Q Consensus 315 h~~~i~~l~~--------~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------l~s~s~dg~i~ 379 (479)
+...|+||+. + -..++.|.++|.|.|.|.+....+.++....-++ .+...|.+ |+.++.||.|+
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy 253 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIY 253 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEE
Q ss_pred E
Q 011711 380 V 380 (479)
Q Consensus 380 i 380 (479)
+
T Consensus 254 ~ 254 (257)
T PF14779_consen 254 T 254 (257)
T ss_pred E
No 489
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.98 E-value=1.4e+02 Score=29.88 Aligned_cols=24 Identities=8% Similarity=-0.018 Sum_probs=15.1
Q ss_pred eEEEEEc--CCEEEEEeCCCeEEEEE
Q 011711 319 VTCLAVG--GKRLYSGSMDNTIRVWD 342 (479)
Q Consensus 319 i~~l~~~--~~~l~sgs~dg~I~iwd 342 (479)
|..+..+ |..++-.+.+|.+.++=
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEc
Confidence 3344444 77777778888666553
No 490
>PF15500 Toxin_39: Putative RNase-like toxin
Probab=66.71 E-value=2.3 Score=30.29 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=15.6
Q ss_pred ecCccCCCCCCcccccCCC
Q 011711 65 LEGRCNRNPCRFAHTESQT 83 (479)
Q Consensus 65 ~~~~~~~~p~~~l~~~~p~ 83 (479)
.-|+|+..|||.+|-+...
T Consensus 24 Gvg~CSppPCPvi~veYkk 42 (96)
T PF15500_consen 24 GVGLCSPPPCPVIRVEYKK 42 (96)
T ss_pred cccccCCCCCCchhHHHHH
Confidence 5689999999999876544
No 491
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.50 E-value=1.4e+02 Score=29.45 Aligned_cols=112 Identities=9% Similarity=0.008 Sum_probs=68.7
Q ss_pred cccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCCceEEEEe----cCCc-eeEEEe-CCCEEEEEcCCeEEEEEcCC--
Q 011711 190 GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN----LGAE-VGSLIC-EGPWVFVGMPNVVKAWHIES-- 261 (479)
Q Consensus 190 ~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~~~~~~~~----~~~~-~~~~~~-~~~~l~~~~~~~i~v~~~~~-- 261 (479)
.-+++|.+|.|++|.+.||.--.|.+|.+.+....+...... .+.. +..+.+ ++.-++.-.+..+-+|....
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pek 143 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEK 143 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhh
Confidence 346799999999999999999999999999985444332222 2222 333333 44444444555555554433
Q ss_pred CceEEecCCCccEEEEEEcCC----EEEEEeCCCcEEEEEccCC
Q 011711 262 SAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPN 301 (479)
Q Consensus 262 ~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~ 301 (479)
......+.+...|+...|.++ +|+++-..+.+.=+.+.++
T Consensus 144 rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 333445667788888888887 3444434444444444443
No 492
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=66.15 E-value=24 Score=20.88 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=18.9
Q ss_pred ccccEEEEEeCCCCCEEEEEeC-C--CcEEEE
Q 011711 191 HKKAVSGIALPLRSDKLYSGSR-D--GTVQLW 219 (479)
Q Consensus 191 H~~~V~~l~~s~~~~~l~s~s~-D--g~v~vw 219 (479)
....-...+|+|||+.|+-++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4456778899999998776654 4 555554
No 493
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=65.70 E-value=40 Score=29.47 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=38.8
Q ss_pred EEEEEcC-CEEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc--CCEEEEEeC
Q 011711 275 YSMVVAN-EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM 334 (479)
Q Consensus 275 ~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~l~sgs~ 334 (479)
..++..+ +.|+.+...+.|.+|++.... .++...+.. -+.|..+.++ |++++|-=.
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~---~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEE---CPLLCTFST-VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCC---CceeEEEcc-hhheeEEEeccccceEEEEEe
Confidence 3444445 777776888899999998443 234444443 3788899997 999998643
No 494
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=64.68 E-value=1.2e+02 Score=28.28 Aligned_cols=220 Identities=11% Similarity=0.035 Sum_probs=97.8
Q ss_pred EEEEEcCCeEEEEEcCCC-ceEEecCCCccEEEEEEcCC---EEEEEeCCCcEEEEEccCCCCC----------ccccee
Q 011711 245 WVFVGMPNVVKAWHIESS-AEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQN----------PFQLAA 310 (479)
Q Consensus 245 ~l~~~~~~~i~v~~~~~~-~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~----------~~~~~~ 310 (479)
+++.|.+..+.+.++... .......+...|.++...+. +++.++....++.+++..-... ..+...
T Consensus 15 ~lL~GTe~Gly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~ 94 (302)
T smart00036 15 WLLVGTEEGLYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVL 94 (302)
T ss_pred EEEEEeCCceEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccce
Confidence 444444444444444332 12223335567888888766 3444444555999998432210 000011
Q ss_pred eecCCCCCeEEEEEc-C--CEEEEEeCCCeEEEEECCCC----cEEEEE---e-CCCCCcEEEEEc----CCEEEEEeCC
Q 011711 311 LLKGHTRPVTCLAVG-G--KRLYSGSMDNTIRVWDLDTL----EAVMTL---N-GHTDAPMSLLCW----DQYLLSCSLD 375 (479)
Q Consensus 311 ~~~~h~~~i~~l~~~-~--~~l~sgs~dg~I~iwd~~~~----~~~~~~---~-~h~~~v~~~~~~----~~~l~s~s~d 375 (479)
...+|.....-.... + ..+++++...+|.++..... ...+.+ . .-..++..+... ...++.|+..
T Consensus 95 ~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~ 174 (302)
T smart00036 95 TKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDK 174 (302)
T ss_pred EeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcC
Confidence 122344433333332 2 24455666677777654321 112211 0 111222222222 3467777665
Q ss_pred CeEEEEEcCC--CcceE----E-ecccc-CccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCC-Ccee-eeeeccCce
Q 011711 376 NTIKVWIMTE--EGNLE----V-AYTHN-EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS-FMER-GRIFSRREV 445 (479)
Q Consensus 376 g~i~iwd~~~--~~~~~----~-~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~-~~~~~~~~v 445 (479)
+...++++.. ..... . ..... .+.....+ +++. ++++- |....+-|... .... ..+.=...+
T Consensus 175 ~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-----~~~e-~Llc~--~~~~v~Vn~~G~~~~r~~~l~w~~~p 246 (302)
T smart00036 175 GGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-----PRDE-FLLCY--DEFGVFVNLYGKRRSRNPILHWEFMP 246 (302)
T ss_pred CCCeEEEEeecccccccccccccccccccCceEEEEE-----CCCe-EEEEE--CcEEEEEeCCCCccccceEEEcCCcc
Confidence 3344455432 10000 0 00000 12112222 4454 55543 44455555553 1111 122225566
Q ss_pred EEEEECCCceEEEEcCCCcEEEEEeccCC
Q 011711 446 RVIETGPDGLFFTGDGTGMLSVWKILAKP 474 (479)
Q Consensus 446 ~~l~~s~~g~l~sg~~dg~v~vw~~~~~~ 474 (479)
.++++... ++++-..+ .|.|+++.++.
T Consensus 247 ~~~~~~~p-yll~~~~~-~ievr~l~~~~ 273 (302)
T smart00036 247 ESFAYHSP-YLLAFHDN-GIEIRSIKTGE 273 (302)
T ss_pred cEEEEECC-EEEEEcCC-cEEEEECCCCc
Confidence 77787753 55555444 49999998754
No 495
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.05 E-value=25 Score=38.34 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=64.8
Q ss_pred EEEeCCCeEEEEEcCCCcceEE-----eccc--cCccceEEEeeeeCCCCCcEEEEEeCCCeEEEeecCCCcee-eeeec
Q 011711 370 LSCSLDNTIKVWIMTEEGNLEV-----AYTH--NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPSFMER-GRIFS 441 (479)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~ 441 (479)
+..+.+-.|..||+++-..... +..+ ............|+|.=....+....|+.|++..+...... ..+..
T Consensus 118 ~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~ 197 (1405)
T KOG3630|consen 118 VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPV 197 (1405)
T ss_pred EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCc
Confidence 3344455788899875432110 1111 11112233344455554434566678999998877654333 23345
Q ss_pred cCceEEEEECCCc-eEEEEcCCCcEEEEEeccC
Q 011711 442 RREVRVIETGPDG-LFFTGDGTGMLSVWKILAK 473 (479)
Q Consensus 442 ~~~v~~l~~s~~g-~l~sg~~dg~v~vw~~~~~ 473 (479)
...+++++|+|.| .++.|-..|++.-|.-.-.
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 7789999999999 9999999999998876544
No 496
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=63.71 E-value=1.6e+02 Score=31.44 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=25.2
Q ss_pred CccEEEEEEcCCEEEEEeCCCcEEEEEccCCC
Q 011711 271 VGEVYSMVVANEMLFAGAQDGNILVWKGIPNT 302 (479)
Q Consensus 271 ~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 302 (479)
...|.+++.+.+.-++-+.+|.|+-|-++...
T Consensus 228 gh~~~qisvs~~HslvLT~~g~Vys~GlN~~h 259 (1267)
T KOG0783|consen 228 GHKVIQISVSHTHSLVLTKFGSVYSWGLNGSH 259 (1267)
T ss_pred ccceEEEEeecceeEEEeecceEEEeecCccc
Confidence 34678888888877777889999999877643
No 497
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=63.60 E-value=1.5e+02 Score=28.77 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=8.1
Q ss_pred cEEEEEccCCC
Q 011711 292 NILVWKGIPNT 302 (479)
Q Consensus 292 ~i~iwd~~~~~ 302 (479)
.+.+||..++.
T Consensus 190 ~v~~YD~~t~~ 200 (376)
T PRK14131 190 EVLSYDPSTNQ 200 (376)
T ss_pred eEEEEECCCCe
Confidence 58888877654
No 498
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=63.42 E-value=52 Score=27.77 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=24.6
Q ss_pred ccEEEEEEcCC--------EEEEEeCCCcEEEEEccC
Q 011711 272 GEVYSMVVANE--------MLFAGAQDGNILVWKGIP 300 (479)
Q Consensus 272 ~~v~~~~~~~~--------~l~~g~~dg~i~iwd~~~ 300 (479)
..+.+++|+|. +|++-+.+|.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 37889999974 899999999999998654
No 499
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=62.75 E-value=1.3e+02 Score=28.04 Aligned_cols=151 Identities=9% Similarity=0.055 Sum_probs=78.6
Q ss_pred EecccccEEEEEeCCCCCEEEEEeCCCcEEEEECCCC-ceEEEEecCCceeEEE--eCCCEEEEEcCCeEEEEE-cCCCc
Q 011711 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-QSASVINLGAEVGSLI--CEGPWVFVGMPNVVKAWH-IESSA 263 (479)
Q Consensus 188 ~~~H~~~V~~l~~s~~~~~l~s~s~Dg~v~vwd~~~~-~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~v~~-~~~~~ 263 (479)
...-.+.+..+.-++||+++++++.-....-||.... -..........+..+. +++.+..+...+.|+.=+ ....+
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGE 219 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcc
Confidence 3445578999999999999988877667778886533 2333333455566654 466777777888888777 22222
Q ss_pred eEEe-----cCCCccEEEEEEcCC-EEEEEeCCCcEEEEEccCCCCCcccceeeecCCCCCeEEEEEc-CCEEEEEeCCC
Q 011711 264 EFSL-----DGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDN 336 (479)
Q Consensus 264 ~~~~-----~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~l~sgs~dg 336 (479)
.... ....-.+..+++.++ .+.+++.+|.+. ...+.++. ++.......-...++.+.|. .+.-++-+.+|
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGkt--W~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G 296 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKT--WQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG 296 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS---EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCcc--ceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence 2211 122334789999876 666677777554 33344432 33333333445567788885 56666667888
Q ss_pred eEEEE
Q 011711 337 TIRVW 341 (479)
Q Consensus 337 ~I~iw 341 (479)
.|.-|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87655
No 500
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=62.70 E-value=1.4e+02 Score=28.34 Aligned_cols=42 Identities=17% Similarity=0.047 Sum_probs=21.2
Q ss_pred CcEEEEEccCCCCCcccceeeecC-CCCCeEEEEEcCCEEEEEeCC
Q 011711 291 GNILVWKGIPNTQNPFQLAALLKG-HTRPVTCLAVGGKRLYSGSMD 335 (479)
Q Consensus 291 g~i~iwd~~~~~~~~~~~~~~~~~-h~~~i~~l~~~~~~l~sgs~d 335 (479)
..+.+||..++. +.....+.. .......+.+++.+++.|+.+
T Consensus 168 ~~v~~YDp~t~~---W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQ---WRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCc---eeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 468888877654 333322221 112222334457777777653
Done!